Citrus Sinensis ID: 013483
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 442 | 2.2.26 [Sep-21-2011] | |||||||
| P55229 | 522 | Glucose-1-phosphate adeny | yes | no | 0.995 | 0.842 | 0.852 | 0.0 | |
| P55243 | 483 | Glucose-1-phosphate adeny | N/A | no | 0.997 | 0.913 | 0.834 | 0.0 | |
| P55230 | 518 | Glucose-1-phosphate adeny | no | no | 0.997 | 0.851 | 0.691 | 0.0 | |
| P55233 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.995 | 0.842 | 0.688 | 0.0 | |
| Q00081 | 470 | Glucose-1-phosphate adeny | N/A | no | 0.997 | 0.938 | 0.668 | 0.0 | |
| P55242 | 519 | Glucose-1-phosphate adeny | N/A | no | 0.986 | 0.840 | 0.675 | 0.0 | |
| P55231 | 521 | Glucose-1-phosphate adeny | no | no | 0.993 | 0.842 | 0.636 | 1e-176 | |
| Q9SIK1 | 523 | Probable glucose-1-phosph | no | no | 0.993 | 0.839 | 0.638 | 1e-171 | |
| P12299 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.986 | 0.835 | 0.608 | 1e-164 | |
| P30524 | 523 | Glucose-1-phosphate adeny | N/A | no | 0.986 | 0.833 | 0.605 | 1e-163 |
| >sp|P55229|GLGL1_ARATH Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/441 (85%), Positives = 417/441 (94%), Gaps = 1/441 (0%)
Query: 2 EKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 61
EKRD RTVA++ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL
Sbjct: 83 EKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 142
Query: 62 TQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF 121
TQYNSASLNRHLARAYN +G+ FGDG VEVLAATQTPGE+GKRWFQGTADAVRQFHWLF
Sbjct: 143 TQYNSASLNRHLARAYN-SNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHWLF 201
Query: 122 EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN 181
ED R+K IEDVLILSGDHLYRMDYMDF+Q+HRQSGADI+ISC+P+DD RASDFGLMKI++
Sbjct: 202 EDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKIDD 261
Query: 182 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241
+GRV+SFSEKPKG DLKAMAVDTT+LGLSK+EAE+KPYIASMGVY+FKKEILLNLLRWRF
Sbjct: 262 KGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRWRF 321
Query: 242 PTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKP 301
PTANDFGSEIIP SA E ++ AYLFNDYWEDIGTIRSFFEANLALT HP FSFYDA KP
Sbjct: 322 PTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAAKP 381
Query: 302 IYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 361
IYTSRRNLPPSKID+SK++DSIISHGSF+T+ IEHS+VGIRSR+ +NV LKDT+MLGAD
Sbjct: 382 IYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLGAD 441
Query: 362 FYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGF 421
+YET+AEVA+LLAEG VP+GIGENTKI+ECIIDKNAR+GKNVIIANSEGIQEADRS++GF
Sbjct: 442 YYETEAEVAALLAEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSEGIQEADRSSDGF 501
Query: 422 YIRSGVTVILKNSVITDGFVI 442
YIRSG+TVILKNSVI DG VI
Sbjct: 502 YIRSGITVILKNSVIKDGVVI 522
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 2EC: 7 |
| >sp|P55243|GLGL3_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/442 (83%), Positives = 408/442 (92%), Gaps = 1/442 (0%)
Query: 2 EKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 61
+K DARTV A+ILGGGAGTRL+PLTK+RAKPAVP+GGAYRLIDVPMSNCINSGINKVYIL
Sbjct: 42 KKGDARTVVAIILGGGAGTRLFPLTKRRAKPAVPMGGAYRLIDVPMSNCINSGINKVYIL 101
Query: 62 TQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF 121
TQ+NSASLNRH+ARAYN+G+GVTF G VEVLAATQTPGE GKRWFQGTA AVRQFHWLF
Sbjct: 102 TQFNSASLNRHIARAYNFGNGVTFESGYVEVLAATQTPGELGKRWFQGTAHAVRQFHWLF 161
Query: 122 EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN 181
ED R+K IEDVLILSGDHLYRMDY+ FVQ+HRQSGADITIS LP+DDSRASDFGLMKI++
Sbjct: 162 EDARSKDIEDVLILSGDHLYRMDYLHFVQSHRQSGADITISSLPIDDSRASDFGLMKIDD 221
Query: 182 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMG-VYLFKKEILLNLLRWR 240
GRV+SFSEKPKG DLKAMAVDTTVLGLS +EA+EKPYIAS+G VY+FKK+ILLNLLRWR
Sbjct: 222 TGRVMSFSEKPKGDDLKAMAVDTTVLGLSPEEAKEKPYIASIGKVYVFKKDILLNLLRWR 281
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPAS E +KAYLFNDYWEDIGTIRSFF ANLALT HPP FSFYDATK
Sbjct: 282 FPTANDFGSEIIPASTKEFCVKAYLFNDYWEDIGTIRSFFRANLALTEHPPRFSFYDATK 341
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
PIYTSRRNLPPS ID+SKIVDSI+SHG F+T+ F+EHSVVGIRSRI NVHLKDT+MLGA
Sbjct: 342 PIYTSRRNLPPSAIDNSKIVDSIVSHGIFLTNCFVEHSVVGIRSRIGTNVHLKDTVMLGA 401
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEG 420
D+YETDAE+ S LAEG+VP+GIGENT+IK+CIIDKNARIGKNV+IANSEG+QEADRS+EG
Sbjct: 402 DYYETDAEIRSQLAEGKVPLGIGENTRIKDCIIDKNARIGKNVVIANSEGVQEADRSSEG 461
Query: 421 FYIRSGVTVILKNSVITDGFVI 442
FY+ SG+TVI KNS I DG VI
Sbjct: 462 FYMASGITVISKNSTIPDGTVI 483
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/441 (69%), Positives = 375/441 (85%)
Query: 2 EKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 61
+ D + VA++ILGGGAGTRL+PLT +RAKPAVPIGG YRLID+PMSNCINSGI K++IL
Sbjct: 78 QNADPKNVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFIL 137
Query: 62 TQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF 121
TQ+NS SLNRHL+R YN+G+GV FGDG VEVLAATQT G+AGK+WFQGTADAVRQF W+F
Sbjct: 138 TQFNSFSLNRHLSRTYNFGNGVNFGDGFVEVLAATQTSGDAGKKWFQGTADAVRQFIWVF 197
Query: 122 EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN 181
ED + K +E VLILSGDHLYRMDYM+FVQ H +S ADIT+SCLPMD+SRASDFGL+KI+
Sbjct: 198 EDAKTKNVEHVLILSGDHLYRMDYMNFVQKHIESNADITVSCLPMDESRASDFGLLKIDQ 257
Query: 182 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241
G+++ FSEKPKG DLKAM VDT++LGL +EA E PYIASMGVY+F+KE+LL LLR +
Sbjct: 258 SGKIIQFSEKPKGDDLKAMQVDTSILGLPPKEAAESPYIASMGVYVFRKEVLLKLLRSSY 317
Query: 242 PTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKP 301
PT+NDFGSEIIP + E ++A+LFNDYWEDIGTI SFF+ANLALT PP F FYD P
Sbjct: 318 PTSNDFGSEIIPLAVGEHNVQAFLFNDYWEDIGTIGSFFDANLALTEQPPKFQFYDQKTP 377
Query: 302 IYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 361
+TS R LPP+K+D +I+DSI+SHG F+ ++HS+VGIRSR+ + V L+DTMM+GAD
Sbjct: 378 FFTSPRFLPPTKVDKCRILDSIVSHGCFLRECSVQHSIVGIRSRLESGVELQDTMMMGAD 437
Query: 362 FYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGF 421
FY+T+AE+ASLLAEG+VPVG+G+NTKIK CIIDKNA+IGKNV+IAN++G++E DR EGF
Sbjct: 438 FYQTEAEIASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKNVVIANADGVEEGDRPEEGF 497
Query: 422 YIRSGVTVILKNSVITDGFVI 442
+IRSG+TV+LKN+ I DG I
Sbjct: 498 HIRSGITVVLKNATIRDGLHI 518
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/440 (68%), Positives = 373/440 (84%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
K D + VAA++LGGGAGTRL+PLT +RAKPAVPIGG YRLIDVPMSNCINSGI K++ILT
Sbjct: 83 KADPKNVAAIVLGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILT 142
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
Q+NS SLNRHLAR YN+G GV FGDG VEV AATQTPGE+GK+WFQGTADAVRQF W FE
Sbjct: 143 QFNSFSLNRHLARTYNFGDGVNFGDGFVEVFAATQTPGESGKKWFQGTADAVRQFFWAFE 202
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
D ++K +E ++ILSGDHLYRMDYM F Q H + ADIT+SC+PMDDSRASD+GLMKI++
Sbjct: 203 DSKSKDVEHIVILSGDHLYRMDYMSFWQKHIDTNADITVSCIPMDDSRASDYGLMKIDHT 262
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GR++ F+EKPKG DL AM VDTTVLGLS EA PYIASMGVY+F+ ++L+ LL ++P
Sbjct: 263 GRIVHFAEKPKGSDLTAMQVDTTVLGLSDLEAMSNPYIASMGVYVFRTDVLMELLNRKYP 322
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
++NDFGSEIIP++ E ++AYLFNDYWEDIGTI+SFF++NLALT PP F FYD P
Sbjct: 323 SSNDFGSEIIPSAVGESNVQAYLFNDYWEDIGTIKSFFDSNLALTQQPPKFEFYDPKTPF 382
Query: 303 YTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADF 362
YTS R LPP+K+D KIVDSI+SHG F+ S I+HS+VG+RSR+ + V +DTMM+GAD+
Sbjct: 383 YTSARFLPPTKVDRCKIVDSIVSHGCFLQESSIQHSIVGVRSRLESGVEFQDTMMMGADY 442
Query: 363 YETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFY 422
Y+T++E+ASLLAEG+VPVG+G+NTKIK CIIDKNA+IGK+V+IAN++G++EADR EGFY
Sbjct: 443 YQTESEIASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKDVVIANTDGVEEADRPNEGFY 502
Query: 423 IRSGVTVILKNSVITDGFVI 442
IRSG+T+ILKN+ I DG VI
Sbjct: 503 IRSGITIILKNATIQDGLVI 522
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Beta vulgaris (taxid: 161934) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/444 (66%), Positives = 373/444 (84%), Gaps = 3/444 (0%)
Query: 1 MEKRDA--RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKV 58
+E+R A + VAAVILGGG GT+L+PLT + A PAVP+GG YRLID+PMSNCINS INK+
Sbjct: 28 LERRRANPKDVAAVILGGGEGTKLFPLTSRTATPAVPVGGCYRLIDIPMSNCINSAINKI 87
Query: 59 YILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFH 118
++LTQYNSA LNRH+AR Y +G+GV+FGDG VEVLAATQTPGEAGK+WFQGTADAVR+F
Sbjct: 88 FVLTQYNSAPLNRHIARTY-FGNGVSFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFI 146
Query: 119 WLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMK 178
W+FED +NK IE++++LSGDHLYRMDYM+ VQNH ADIT+SC P +DSRASDFGL+K
Sbjct: 147 WVFEDAKNKNIENIVVLSGDHLYRMDYMELVQNHIDRNADITLSCAPAEDSRASDFGLVK 206
Query: 179 INNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238
I++ GRV+ F+EKPKG DLKAM VDTT++GLS Q+A++ PYIASMGVY+FK ++LL LL+
Sbjct: 207 IDSRGRVVQFAEKPKGFDLKAMQVDTTLVGLSPQDAKKSPYIASMGVYVFKTDVLLKLLK 266
Query: 239 WRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDA 298
W +PT+NDFGSEIIPA+ ++ ++AY+F DYWEDIGTI+SF+ A+LALT P F FYD
Sbjct: 267 WSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDIGTIKSFYNASLALTQEFPEFQFYDP 326
Query: 299 TKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMML 358
P YTS R LPP+KID+ KI D+IISHG F+ +EHS+VG RSR++ V LKDT M+
Sbjct: 327 KTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLRDCSVEHSIVGERSRLDCGVELKDTFMM 386
Query: 359 GADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSA 418
GAD+Y+T++E+ASLLAEG+VP+GIGENTKI++CIIDKNA+IGKNV I N +G+QEADR
Sbjct: 387 GADYYQTESEIASLLAEGKVPIGIGENTKIRKCIIDKNAKIGKNVSIINKDGVQEADRPE 446
Query: 419 EGFYIRSGVTVILKNSVITDGFVI 442
EGFYIRSG+ +IL+ + I DG VI
Sbjct: 447 EGFYIRSGIIIILEKATIRDGTVI 470
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55242|GLGL2_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/438 (67%), Positives = 365/438 (83%), Gaps = 2/438 (0%)
Query: 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY 64
D + VA+VILGGG GTRL+PLT +RAKPAVPIGG YRLIDVPMSNCINSGI K++ILTQ+
Sbjct: 84 DPKAVASVILGGGVGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQF 143
Query: 65 NSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDP 124
NS SLNRHLA YN+G+GV FGDG VEVLA TQTPG+ K WFQ ADAVR+F W+FE+
Sbjct: 144 NSFSLNRHLA-TYNFGNGVGFGDGFVEVLAGTQTPGDGRKMWFQA-ADAVREFIWVFENQ 201
Query: 125 RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 184
+NK +E ++ILSGDHLYRM+YMDFVQ H + ADIT+SC+PMDD RASDFGLMKI+ G
Sbjct: 202 KNKNVEHIIILSGDHLYRMNYMDFVQKHIDTNADITVSCVPMDDGRASDFGLMKIDETGA 261
Query: 185 VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244
++ F+EKPKG LKAM VDT++LGLS+QEA PYIASMGVY+FK ++LLNLL+ +P+
Sbjct: 262 IIQFAEKPKGPALKAMQVDTSILGLSEQEASNFPYIASMGVYVFKTDVLLNLLKSAYPSC 321
Query: 245 NDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT 304
NDFGSEIIP++ + ++AYLFNDYWEDIGT++SFF+ANLALT PP F F D P YT
Sbjct: 322 NDFGSEIIPSAVKDHNVQAYLFNDYWEDIGTVKSFFDANLALTKQPPKFDFNDPKTPFYT 381
Query: 305 SRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYE 364
S R LPP+K+D S+IVD+IISHG F+ I+HS+VG+RSR++ V KDTMM+GAD+Y+
Sbjct: 382 SARFLPPTKVDKSRIVDAIISHGCFLRECNIQHSIVGVRSRLDYGVEFKDTMMMGADYYQ 441
Query: 365 TDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIR 424
T+ E+ASLLAEG+VP+G+G NTKI+ CIIDKNA+IGK+V+I N EG++EADRSAEGFYIR
Sbjct: 442 TECEIASLLAEGKVPIGVGPNTKIQNCIIDKNAKIGKDVVILNKEGVEEADRSAEGFYIR 501
Query: 425 SGVTVILKNSVITDGFVI 442
SG+TVI+KN+ I DG VI
Sbjct: 502 SGITVIMKNATIKDGTVI 519
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55231|GLGL3_ARATH Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 618 bits (1593), Expect = e-176, Method: Compositional matrix adjust.
Identities = 280/440 (63%), Positives = 360/440 (81%), Gaps = 1/440 (0%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+ D + VAA+ILGGG G +L+PLTK+ A PAVP+GG YR+ID+PMSNCINS INK+++LT
Sbjct: 83 RADPKNVAAIILGGGDGAKLFPLTKRAATPAVPVGGCYRMIDIPMSNCINSCINKIFVLT 142
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
Q+NSASLNRHLAR Y +G+G+ FGDG VEVLAATQTPGEAGK+WFQGTADAVR+F W+FE
Sbjct: 143 QFNSASLNRHLARTY-FGNGINFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFE 201
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
D +N+ IE+++ILSGDHLYRM+YMDFVQ+H S ADIT+SC P+D+SRAS++GL+ I+
Sbjct: 202 DAKNRNIENIIILSGDHLYRMNYMDFVQHHVDSKADITLSCAPVDESRASEYGLVNIDRS 261
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GRV+ FSEKP G DLK+M DTT+ GLS QEA + PYIASMGVY FK E LL LL WR+P
Sbjct: 262 GRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEAAKSPYIASMGVYCFKTEALLKLLTWRYP 321
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
++NDFGSEIIPA+ + ++ Y++ DYWEDIGTI+SF+EAN+AL P F FYD P
Sbjct: 322 SSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIGTIKSFYEANIALVEEHPKFEFYDQNTPF 381
Query: 303 YTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADF 362
YTS R LPP+K + +IV+S+ISHG F+ I+ S++G RSR++ V L+DT+MLGAD
Sbjct: 382 YTSPRFLPPTKTEKCRIVNSVISHGCFLGECSIQRSIIGERSRLDYGVELQDTLMLGADS 441
Query: 363 YETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFY 422
Y+T++E+ASLLAEG VP+GIG +TKI++CIIDKNA+IGKNV+I N + ++EADR EGFY
Sbjct: 442 YQTESEIASLLAEGNVPIGIGRDTKIRKCIIDKNAKIGKNVVIMNKDDVKEADRPEEGFY 501
Query: 423 IRSGVTVILKNSVITDGFVI 442
IRSG+TV+++ + I DG VI
Sbjct: 502 IRSGITVVVEKATIKDGTVI 521
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|Q9SIK1|GLGL4_ARATH Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 602 bits (1551), Expect = e-171, Method: Compositional matrix adjust.
Identities = 281/440 (63%), Positives = 354/440 (80%), Gaps = 1/440 (0%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
K D + VAA+ILGGG G +L+PLT + A PAVP+GG YRLID+PMSNCINS INK+++LT
Sbjct: 85 KVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKIFVLT 144
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
Q+NSASLNRHLAR Y G VEVLAATQTPGEAGK+WFQGTADAVR+F W+FE
Sbjct: 145 QFNSASLNRHLARTYFGNGINFGGGF-VEVLAATQTPGEAGKKWFQGTADAVRKFLWVFE 203
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
D +N+ IE++LILSGDHLYRM+YMDFVQ+H S ADIT+SC P+ +SRAS+FGL+KI+
Sbjct: 204 DAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKIDRG 263
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GRV+ FSEKP G DLK+M DTT+LGLS QEA + PYIASMGVY FK E LLNLL ++P
Sbjct: 264 GRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTRQYP 323
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
++NDFGSE+IPA+ + ++ Y+F DYWEDIGTI++F+EANLAL P F FYD P
Sbjct: 324 SSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPETPF 383
Query: 303 YTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADF 362
YTS R LPP+K + ++VDSIISHG F+ ++ S++G RSR++ V L+DT+MLGAD+
Sbjct: 384 YTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQDTLMLGADY 443
Query: 363 YETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFY 422
Y+T++E+ASLLAEG+VP+GIG++TKI++CIIDKNA+IGKNVII N +QEADR EGFY
Sbjct: 444 YQTESEIASLLAEGKVPIGIGKDTKIRKCIIDKNAKIGKNVIIMNKGDVQEADRPEEGFY 503
Query: 423 IRSGVTVILKNSVITDGFVI 442
IRSG+TVI++ + I DG VI
Sbjct: 504 IRSGITVIVEKATIQDGTVI 523
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P12299|GLGL2_WHEAT Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 577 bits (1487), Expect = e-164, Method: Compositional matrix adjust.
Identities = 267/439 (60%), Positives = 343/439 (78%), Gaps = 3/439 (0%)
Query: 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY 64
D VAAVILGGG GT+L+PLT RA PAVPIGG YRLID+PMSNC NSGINK++++TQ+
Sbjct: 86 DPNEVAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQF 145
Query: 65 NSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDP 124
NSASLNRH+ R Y G G+ F DG VEVLAATQ PGEA WF+GTADAVR+F W+ ED
Sbjct: 146 NSASLNRHIHRTY-LGGGINFTDGSVEVLAATQMPGEAAG-WFRGTADAVRKFIWVLEDY 203
Query: 125 -RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 183
+NK IE +LILSGD LYRMDYM+ VQ H ADIT+SC P+ +SRAS++GL+K ++ G
Sbjct: 204 YKNKSIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASEYGLVKFDSSG 263
Query: 184 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
RV+ FSEKPKG DL+AM VDT+ L + + + PYIASMGVY+FK+++LLNLL+ R+
Sbjct: 264 RVVQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAE 323
Query: 244 ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIY 303
+DFGSEI+P + ++ ++AY+F DYWEDIGTIRSFF+AN+AL PP F FYD P +
Sbjct: 324 LHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFF 383
Query: 304 TSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFY 363
TS R LPP+K D +I ++IISHG F+ IEHS++G+RSR+N+ LK+ MM+GAD Y
Sbjct: 384 TSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEHSIIGVRSRLNSGSELKNAMMMGADSY 443
Query: 364 ETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYI 423
ET+ E++ L++EG+VP+G+GENTKI CIID NARIG++V+I+N EG+QEADR EG+YI
Sbjct: 444 ETEDEISRLMSEGKVPIGVGENTKISNCIIDMNARIGRDVVISNKEGVQEADRPEEGYYI 503
Query: 424 RSGVTVILKNSVITDGFVI 442
RSG+ VI KN+ I DG V+
Sbjct: 504 RSGIVVIQKNATIKDGTVV 522
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P30524|GLGL1_HORVU Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2 | Back alignment and function description |
|---|
Score = 575 bits (1483), Expect = e-163, Method: Compositional matrix adjust.
Identities = 266/439 (60%), Positives = 343/439 (78%), Gaps = 3/439 (0%)
Query: 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY 64
D VAAVILGGG GT+L+PLT RA PAVPIGG YRLID+PMSNC NSGINK++++TQ+
Sbjct: 87 DPNEVAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQF 146
Query: 65 NSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDP 124
NSASLNRH+ R Y G G+ F DG VEVLAATQ PGEA WF+GTADAVR+F W+ ED
Sbjct: 147 NSASLNRHIHRTY-LGGGINFTDGSVEVLAATQMPGEAAG-WFRGTADAVRKFIWVLEDY 204
Query: 125 -RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 183
++K IE +LILSGD LYRMDYM+ VQ H ADIT+SC P+ +SRAS++GL+K ++ G
Sbjct: 205 YKHKSIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASEYGLVKFDSSG 264
Query: 184 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
RV+ FSEKPKG DL+AM VDT+ L + + + PYIASMGVY+FK+++LLNLL+ R+
Sbjct: 265 RVIQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAE 324
Query: 244 ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIY 303
+DFGSEI+P + ++ ++AY+F DYWEDIGTIRSFF+AN+AL PP F FYD P +
Sbjct: 325 LHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFF 384
Query: 304 TSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFY 363
TS R LPP+K D +I ++IISHG F+ IEHS++G+RSR+N+ LK+ MM+GAD Y
Sbjct: 385 TSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEHSIIGVRSRLNSGSELKNAMMMGADSY 444
Query: 364 ETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYI 423
ET+ E++ L++EG+VP+G+GENTKI CIID NARIG++V+I+N EG+QEADR EG+YI
Sbjct: 445 ETEDEISRLMSEGKVPIGVGENTKISNCIIDMNARIGRDVVISNKEGVQEADRPEEGYYI 504
Query: 424 RSGVTVILKNSVITDGFVI 442
RSG+ VI KN+ I DG V+
Sbjct: 505 RSGIVVIQKNATIKDGTVV 523
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 442 | ||||||
| 255552303 | 533 | glucose-1-phosphate adenylyltransferase, | 1.0 | 0.829 | 0.893 | 0.0 | |
| 359807441 | 520 | uncharacterized protein LOC100810451 [Gl | 1.0 | 0.85 | 0.884 | 0.0 | |
| 225432564 | 520 | PREDICTED: glucose-1-phosphate adenylylt | 1.0 | 0.85 | 0.889 | 0.0 | |
| 356563435 | 523 | PREDICTED: glucose-1-phosphate adenylylt | 1.0 | 0.845 | 0.880 | 0.0 | |
| 297737003 | 482 | unnamed protein product [Vitis vinifera] | 1.0 | 0.917 | 0.889 | 0.0 | |
| 13487783 | 525 | ADP-glucose pyrophosphorylase [Cicer ari | 1.0 | 0.841 | 0.886 | 0.0 | |
| 449463124 | 518 | PREDICTED: glucose-1-phosphate adenylylt | 1.0 | 0.853 | 0.877 | 0.0 | |
| 449515371 | 522 | PREDICTED: glucose-1-phosphate adenylylt | 1.0 | 0.846 | 0.873 | 0.0 | |
| 449432718 | 522 | PREDICTED: glucose-1-phosphate adenylylt | 1.0 | 0.846 | 0.873 | 0.0 | |
| 224100249 | 528 | predicted protein [Populus trichocarpa] | 1.0 | 0.837 | 0.884 | 0.0 |
| >gi|255552303|ref|XP_002517196.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] gi|223543831|gb|EEF45359.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/442 (89%), Positives = 425/442 (96%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV A+ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 92 MEKRDPRTVVAIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 151
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+G+G+ FGDG VEVLAATQTPGEAGKRWFQGTADAVRQFHWL
Sbjct: 152 LTQFNSASLNRHLARAYNFGNGINFGDGFVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 211
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K I+DVL+LSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLM I+
Sbjct: 212 FEDARSKDIDDVLVLSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMNID 271
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVLSFSEKPKG DLKAMAVDTTVLGLSK+EAE+KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 272 NKGRVLSFSEKPKGADLKAMAVDTTVLGLSKEEAEKKPYIASMGVYVFKKEILLNLLRWR 331
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E F+KAYLFNDYWEDIGTI+SFF ANLALT HPP FSFYDA K
Sbjct: 332 FPTANDFGSEIIPASAKEFFIKAYLFNDYWEDIGTIQSFFAANLALTEHPPRFSFYDAAK 391
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P+YTSRRNLPPSKI++ KIVDSIISHGSF+T+SFIEHSVVGIRSRIN+NVHLKDT+MLGA
Sbjct: 392 PMYTSRRNLPPSKIENCKIVDSIISHGSFLTNSFIEHSVVGIRSRINSNVHLKDTVMLGA 451
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEG 420
DFYETD EVA+LLAEGRVP+GIGENTKI+ECIIDKNARIGKNV+IANSEGIQEADRS+EG
Sbjct: 452 DFYETDDEVAALLAEGRVPIGIGENTKIRECIIDKNARIGKNVVIANSEGIQEADRSSEG 511
Query: 421 FYIRSGVTVILKNSVITDGFVI 442
FYIRSGVT+ILKNSVI DGFVI
Sbjct: 512 FYIRSGVTIILKNSVIQDGFVI 533
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359807441|ref|NP_001241391.1| uncharacterized protein LOC100810451 [Glycine max] gi|255639628|gb|ACU20108.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/442 (88%), Positives = 428/442 (96%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
ME+R+ RTV AVILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 79 MERRNPRTVLAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 138
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRH+ARAYN G+GVTFGDG VEVLAATQTPGEAGK+WFQGTADAVRQFHWL
Sbjct: 139 LTQFNSASLNRHIARAYNSGNGVTFGDGYVEVLAATQTPGEAGKKWFQGTADAVRQFHWL 198
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FEDPR+K IEDVLILSGDHLYRMDYMDFVQNHR+SGADIT+SCLPMDDSRASDFGLMKI+
Sbjct: 199 FEDPRSKDIEDVLILSGDHLYRMDYMDFVQNHRESGADITLSCLPMDDSRASDFGLMKID 258
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVLSFSEKPKG++LKAM VDTTVLGLSK EA++KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 259 NKGRVLSFSEKPKGEELKAMQVDTTVLGLSKDEAQKKPYIASMGVYVFKKEILLNLLRWR 318
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSE+IPASA E ++KAYLFNDYWEDIGTIRSFFEANLALT HPP FSFYDA K
Sbjct: 319 FPTANDFGSEVIPASAREFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPPRFSFYDAAK 378
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P+YTSRRNLPPSKID+SKIVDSIISHGSF+ +SFIEHSVVGIRSRIN+N+HLKDT+MLGA
Sbjct: 379 PMYTSRRNLPPSKIDNSKIVDSIISHGSFLNNSFIEHSVVGIRSRINSNIHLKDTVMLGA 438
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEG 420
D+YETDAEVA+LLAEGRVP+GIGENTKIK+CIIDKNARIGKNV+IANSEGIQEADRS+EG
Sbjct: 439 DYYETDAEVAALLAEGRVPIGIGENTKIKDCIIDKNARIGKNVVIANSEGIQEADRSSEG 498
Query: 421 FYIRSGVTVILKNSVITDGFVI 442
FYIRSGVT++LKNSVI DGF+I
Sbjct: 499 FYIRSGVTIVLKNSVIEDGFII 520
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432564|ref|XP_002281069.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/442 (88%), Positives = 422/442 (95%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV AVILGGGAGTRL+PLTK+RAKPAVPIGG+YRLIDVPMSNCINSGINKVYI
Sbjct: 79 MEKRDPRTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGSYRLIDVPMSNCINSGINKVYI 138
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+G GV FGDG VE LAATQTPGEAGKRWFQGTADAVRQFHWL
Sbjct: 139 LTQFNSASLNRHLARAYNFGHGVNFGDGYVEALAATQTPGEAGKRWFQGTADAVRQFHWL 198
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI+
Sbjct: 199 FEDQRSKEIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKID 258
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVL FSEKPKG+DLKAM VDT VLGLS++EAE+KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 259 NKGRVLFFSEKPKGEDLKAMEVDTKVLGLSREEAEKKPYIASMGVYVFKKEILLNLLRWR 318
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E F+KAYLFNDYWEDIGTIRSFFEANLALTAHPP FSFYDATK
Sbjct: 319 FPTANDFGSEIIPASAKEFFIKAYLFNDYWEDIGTIRSFFEANLALTAHPPRFSFYDATK 378
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P+YTSRRNLPPSKIDDSKIVDSIISHGSF+ + FIEHSVVGIRSR+N+NVHLKDT+MLGA
Sbjct: 379 PMYTSRRNLPPSKIDDSKIVDSIISHGSFLNNCFIEHSVVGIRSRVNSNVHLKDTVMLGA 438
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEG 420
D+YETD+EVASLLAEGRVP+GIGENT+IK+CIIDKNARIGKNV+I+NSEGIQEADRS EG
Sbjct: 439 DYYETDSEVASLLAEGRVPIGIGENTRIKDCIIDKNARIGKNVVISNSEGIQEADRSLEG 498
Query: 421 FYIRSGVTVILKNSVITDGFVI 442
FYIRSG+T+ILKN I DGFVI
Sbjct: 499 FYIRSGITIILKNFTIKDGFVI 520
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563435|ref|XP_003549968.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/442 (88%), Positives = 427/442 (96%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
ME+R+ RTV AVILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 82 MERRNPRTVLAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 141
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRH+ARAYN G+GVTFGDG VEVLAATQTPGEAGK+WFQGTADAVRQFHWL
Sbjct: 142 LTQFNSASLNRHIARAYNSGNGVTFGDGYVEVLAATQTPGEAGKKWFQGTADAVRQFHWL 201
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FEDPR+K IEDVLILSGDHLYRMDYMDFVQNHR+SGADIT+SCLPMDDSRASDFGLM+I+
Sbjct: 202 FEDPRSKDIEDVLILSGDHLYRMDYMDFVQNHRESGADITLSCLPMDDSRASDFGLMRID 261
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GR+LSFSEKPKG++LKAM VDTTVLGLSK EA++KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 262 NKGRILSFSEKPKGEELKAMQVDTTVLGLSKDEAQKKPYIASMGVYVFKKEILLNLLRWR 321
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSE+IPASA E ++KAYLFNDYWEDIGTIRSFFEANLALT HPP FSFYDA K
Sbjct: 322 FPTANDFGSEVIPASAREFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPPRFSFYDAAK 381
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P+YTSRRNLPPSKID+SKIVDSIISHGSF+ +SFIEHSVVGIRSRIN+NVHLKDT+MLGA
Sbjct: 382 PMYTSRRNLPPSKIDNSKIVDSIISHGSFLNNSFIEHSVVGIRSRINSNVHLKDTVMLGA 441
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEG 420
D+YETDAEV +LLAEGRVP+GIGENTKIK+CIIDKNARIGKNV+IANSEGIQEADRS+EG
Sbjct: 442 DYYETDAEVVALLAEGRVPIGIGENTKIKDCIIDKNARIGKNVVIANSEGIQEADRSSEG 501
Query: 421 FYIRSGVTVILKNSVITDGFVI 442
FYIRSGVT++LKNSVI DGF+I
Sbjct: 502 FYIRSGVTIVLKNSVIEDGFII 523
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737003|emb|CBI26204.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/442 (88%), Positives = 422/442 (95%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV AVILGGGAGTRL+PLTK+RAKPAVPIGG+YRLIDVPMSNCINSGINKVYI
Sbjct: 41 MEKRDPRTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGSYRLIDVPMSNCINSGINKVYI 100
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+G GV FGDG VE LAATQTPGEAGKRWFQGTADAVRQFHWL
Sbjct: 101 LTQFNSASLNRHLARAYNFGHGVNFGDGYVEALAATQTPGEAGKRWFQGTADAVRQFHWL 160
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI+
Sbjct: 161 FEDQRSKEIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKID 220
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVL FSEKPKG+DLKAM VDT VLGLS++EAE+KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 221 NKGRVLFFSEKPKGEDLKAMEVDTKVLGLSREEAEKKPYIASMGVYVFKKEILLNLLRWR 280
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E F+KAYLFNDYWEDIGTIRSFFEANLALTAHPP FSFYDATK
Sbjct: 281 FPTANDFGSEIIPASAKEFFIKAYLFNDYWEDIGTIRSFFEANLALTAHPPRFSFYDATK 340
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P+YTSRRNLPPSKIDDSKIVDSIISHGSF+ + FIEHSVVGIRSR+N+NVHLKDT+MLGA
Sbjct: 341 PMYTSRRNLPPSKIDDSKIVDSIISHGSFLNNCFIEHSVVGIRSRVNSNVHLKDTVMLGA 400
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEG 420
D+YETD+EVASLLAEGRVP+GIGENT+IK+CIIDKNARIGKNV+I+NSEGIQEADRS EG
Sbjct: 401 DYYETDSEVASLLAEGRVPIGIGENTRIKDCIIDKNARIGKNVVISNSEGIQEADRSLEG 460
Query: 421 FYIRSGVTVILKNSVITDGFVI 442
FYIRSG+T+ILKN I DGFVI
Sbjct: 461 FYIRSGITIILKNFTIKDGFVI 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13487783|gb|AAK27718.1|AF356002_1 ADP-glucose pyrophosphorylase [Cicer arietinum] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/442 (88%), Positives = 421/442 (95%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
+EKRD TV A+ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 84 LEKRDPSTVVAIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 143
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRH+ARAYN G+GVTFGDG VEVLAATQTPGE GK+WFQGTADAVRQFHWL
Sbjct: 144 LTQFNSASLNRHIARAYNSGTGVTFGDGYVEVLAATQTPGEQGKKWFQGTADAVRQFHWL 203
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHR+SGADIT+SCLPMDDSRASDFGLMKI+
Sbjct: 204 FEDARSKDIEDVLILSGDHLYRMDYMDFVQNHRESGADITLSCLPMDDSRASDFGLMKID 263
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVLSFSEKPKG+DLKAM VDTTVLGLSK EA EKPYIASMGVY+FKKEILLNLLRWR
Sbjct: 264 NKGRVLSFSEKPKGEDLKAMQVDTTVLGLSKDEALEKPYIASMGVYVFKKEILLNLLRWR 323
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E ++KAYLFNDYWEDIGTIRSFFEANLALT HP FSFYDA K
Sbjct: 324 FPTANDFGSEIIPASAREFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPSKFSFYDAAK 383
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P+YTSRRNLPPSKID+SKIVDSI+SHGSF+ +SFIEHSVVGIRSRIN+NVHLKDT+MLGA
Sbjct: 384 PMYTSRRNLPPSKIDNSKIVDSIVSHGSFLNNSFIEHSVVGIRSRINSNVHLKDTVMLGA 443
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEG 420
DFYET+AEVA+LLAEGRVP+GIGENTKIK+CIIDKNARIGKNVIIANSEGIQEADRSAEG
Sbjct: 444 DFYETEAEVAALLAEGRVPIGIGENTKIKDCIIDKNARIGKNVIIANSEGIQEADRSAEG 503
Query: 421 FYIRSGVTVILKNSVITDGFVI 442
FYIRSGVTV+LKNS I DG VI
Sbjct: 504 FYIRSGVTVVLKNSTIEDGLVI 525
|
Source: Cicer arietinum Species: Cicer arietinum Genus: Cicer Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463124|ref|XP_004149284.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/442 (87%), Positives = 420/442 (95%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD+RTV AVILGGGAGTRL+PLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 77 MEKRDSRTVVAVILGGGAGTRLFPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 136
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+GSGVT GDG VEVLAATQTPGEAGKRWFQGTADAVRQFHWL
Sbjct: 137 LTQFNSASLNRHLARAYNFGSGVTLGDGFVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 196
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHRQSGADIT+SC+P+DDSRASDFGLMKI+
Sbjct: 197 FEDARSKDIEDVLILSGDHLYRMDYMDFVQNHRQSGADITLSCIPIDDSRASDFGLMKID 256
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N GRV+SFSEKP+GKDLKAM VDTTVLGLSK EA KPYIASMGVY+FKKEILLN+LRWR
Sbjct: 257 NSGRVISFSEKPRGKDLKAMEVDTTVLGLSKDEALRKPYIASMGVYIFKKEILLNILRWR 316
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIP SA E +KAYLFNDYWEDIGTIRSFFEANLALT PP FSFYD TK
Sbjct: 317 FPTANDFGSEIIPFSAREFLMKAYLFNDYWEDIGTIRSFFEANLALTEQPPRFSFYDETK 376
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
PIYTSRRNLPP+KID+ KIVDSIISHG F+T+SFI+HSVVGIRSRIN+NVHLKDT+MLGA
Sbjct: 377 PIYTSRRNLPPTKIDNCKIVDSIISHGCFLTNSFIDHSVVGIRSRINSNVHLKDTVMLGA 436
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEG 420
DFYET+ EVA+LLAEGRVP+GIGENTKIK+CIIDKNARIGKNV++ANSEG+QEADRS+EG
Sbjct: 437 DFYETEGEVAALLAEGRVPIGIGENTKIKDCIIDKNARIGKNVVLANSEGVQEADRSSEG 496
Query: 421 FYIRSGVTVILKNSVITDGFVI 442
FYIRSG+T+IL+NSVI DGFVI
Sbjct: 497 FYIRSGITIILRNSVIKDGFVI 518
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449515371|ref|XP_004164723.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/442 (87%), Positives = 421/442 (95%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV A+ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 81 MEKRDPRTVVAIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 140
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+ GVTFGDG VEVLAATQTPGEAGK WFQGTADAVRQFHWL
Sbjct: 141 LTQFNSASLNRHLARAYNFSGGVTFGDGYVEVLAATQTPGEAGKNWFQGTADAVRQFHWL 200
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHRQSGADIT+SCLPMDDSRASDFGLMKI+
Sbjct: 201 FEDARSKNIEDVLILSGDHLYRMDYMDFVQNHRQSGADITLSCLPMDDSRASDFGLMKID 260
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
+GR++SFSEKPKG+DLKAMAVDTT+LGLSK+EA++KPYIASMGVY+FKK+ILLNLLRWR
Sbjct: 261 EKGRIISFSEKPKGQDLKAMAVDTTILGLSKEEAQKKPYIASMGVYVFKKDILLNLLRWR 320
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E F+KAYLFNDYWEDIGTIRSFFEANLALT PP FSFYDA K
Sbjct: 321 FPTANDFGSEIIPASAKEFFIKAYLFNDYWEDIGTIRSFFEANLALTEQPPRFSFYDAAK 380
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P++TSRRNLPP+KID SKIVDSIISHGSF+ S FIEHSV+GIRSRIN+NVHLKDT+MLGA
Sbjct: 381 PMFTSRRNLPPTKIDQSKIVDSIISHGSFLNSCFIEHSVIGIRSRINSNVHLKDTVMLGA 440
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEG 420
D+YET+ EVASLLAEGRVP+GIGENTKIK+CIIDKNARIGKNV+IANSEG+QEADRS+EG
Sbjct: 441 DYYETEDEVASLLAEGRVPIGIGENTKIKDCIIDKNARIGKNVVIANSEGVQEADRSSEG 500
Query: 421 FYIRSGVTVILKNSVITDGFVI 442
FYIRSGVT+ILKN+VI DG VI
Sbjct: 501 FYIRSGVTIILKNAVIKDGLVI 522
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432718|ref|XP_004134146.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/442 (87%), Positives = 421/442 (95%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV A+ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 81 MEKRDPRTVVAIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 140
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+ GVTFGDG VEVLAATQTPGEAGK WFQGTADAVRQFHWL
Sbjct: 141 LTQFNSASLNRHLARAYNFSGGVTFGDGYVEVLAATQTPGEAGKNWFQGTADAVRQFHWL 200
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHRQSGADIT+SCLPMDDSRASDFGLMKI+
Sbjct: 201 FEDARSKNIEDVLILSGDHLYRMDYMDFVQNHRQSGADITLSCLPMDDSRASDFGLMKID 260
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
+GR++SFSEKPKG+DLKAMAVDTT+LGLSK+EA++KPYIASMGVY+FKK+ILLNLLRWR
Sbjct: 261 EKGRIISFSEKPKGQDLKAMAVDTTILGLSKEEAQKKPYIASMGVYVFKKDILLNLLRWR 320
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E F+KAYLFNDYWEDIGTIRSFFEANLALT PP FSFYDA K
Sbjct: 321 FPTANDFGSEIIPASAKEFFIKAYLFNDYWEDIGTIRSFFEANLALTEQPPRFSFYDAAK 380
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P++TSRRNLPP+KID SKIVDSIISHGSF+ S FIEHSV+GIRSRIN+NVHLKDT+MLGA
Sbjct: 381 PMFTSRRNLPPTKIDQSKIVDSIISHGSFLNSCFIEHSVIGIRSRINSNVHLKDTVMLGA 440
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEG 420
D+YET+ EVASLLAEGRVP+GIGENTKIK+CIIDKNARIGKNV+IANSEG+QEADRS+EG
Sbjct: 441 DYYETEDEVASLLAEGRVPIGIGENTKIKDCIIDKNARIGKNVVIANSEGVQEADRSSEG 500
Query: 421 FYIRSGVTVILKNSVITDGFVI 442
FYIRSGVT+ILKN+VI DG VI
Sbjct: 501 FYIRSGVTIILKNAVIKDGLVI 522
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100249|ref|XP_002311802.1| predicted protein [Populus trichocarpa] gi|222851622|gb|EEE89169.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/442 (88%), Positives = 417/442 (94%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV AVILGGGAGTRL+PLTK+RAKPAVPIGG+YRLIDVPMSNCINSGINKVYI
Sbjct: 87 MEKRDPRTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGSYRLIDVPMSNCINSGINKVYI 146
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQYNSASLNRHLARAYN G+GV+FGDG VE LAATQTPGEAGK+WFQGTADAVRQFHWL
Sbjct: 147 LTQYNSASLNRHLARAYNLGNGVSFGDGFVEALAATQTPGEAGKKWFQGTADAVRQFHWL 206
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FE PR+K IEDVLILSGDHLYRMDYMDFVQNHRQ GADIT+SCLPMDDSRASDFGLMKI+
Sbjct: 207 FEGPRSKEIEDVLILSGDHLYRMDYMDFVQNHRQGGADITLSCLPMDDSRASDFGLMKID 266
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVLSFSEKPKG DLKAM VDTTVLGLSK+EA +KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 267 NKGRVLSFSEKPKGVDLKAMEVDTTVLGLSKEEALKKPYIASMGVYVFKKEILLNLLRWR 326
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E ++KAYLFNDYWEDIGTIRSFF ANLALT HPP FSFYDA K
Sbjct: 327 FPTANDFGSEIIPASAKEFYMKAYLFNDYWEDIGTIRSFFAANLALTEHPPRFSFYDAAK 386
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P+YTSRRNLPPSKID SKIVDSIISHGSF+ + FIEHSV+GIRSRIN+N HL+DT+MLGA
Sbjct: 387 PMYTSRRNLPPSKIDSSKIVDSIISHGSFLNNCFIEHSVIGIRSRINSNAHLQDTVMLGA 446
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEG 420
DFYET+AEVAS++AEG VPVGIGENTKIKECIIDKNARIGKNV+IANSEGIQEADRS EG
Sbjct: 447 DFYETEAEVASVVAEGSVPVGIGENTKIKECIIDKNARIGKNVVIANSEGIQEADRSMEG 506
Query: 421 FYIRSGVTVILKNSVITDGFVI 442
FYIRSGVTVILKNSVI DG VI
Sbjct: 507 FYIRSGVTVILKNSVIQDGTVI 528
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 442 | ||||||
| TAIR|locus:2182132 | 522 | APL1 "ADP glucose pyrophosphor | 0.995 | 0.842 | 0.827 | 2e-198 | |
| TAIR|locus:2199241 | 518 | APL2 "ADPGLC-PPase large subun | 0.997 | 0.851 | 0.675 | 2.2e-167 | |
| TAIR|locus:2049364 | 523 | APL4 [Arabidopsis thaliana (ta | 0.993 | 0.839 | 0.631 | 1.3e-153 | |
| TAIR|locus:2136358 | 521 | APL3 [Arabidopsis thaliana (ta | 0.993 | 0.842 | 0.622 | 1.3e-153 | |
| TAIR|locus:2156263 | 520 | ADG1 "ADP glucose pyrophosphor | 0.972 | 0.826 | 0.560 | 5.7e-130 | |
| UNIPROTKB|P15280 | 514 | AGPS "Glucose-1-phosphate aden | 0.979 | 0.842 | 0.553 | 6.6e-129 | |
| TAIR|locus:2032003 | 476 | APS2 "AT1G05610" [Arabidopsis | 0.947 | 0.880 | 0.399 | 2e-81 | |
| TIGR_CMR|SO_1498 | 420 | SO_1498 "glucose-1-phosphate a | 0.644 | 0.678 | 0.391 | 3.3e-49 | |
| UNIPROTKB|Q9KRB5 | 405 | glgC1 "Glucose-1-phosphate ade | 0.746 | 0.814 | 0.337 | 2.4e-44 | |
| TIGR_CMR|VC_1727 | 405 | VC_1727 "glucose-1-phosphate a | 0.746 | 0.814 | 0.337 | 2.4e-44 |
| TAIR|locus:2182132 APL1 "ADP glucose pyrophosphorylase large subunit 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1921 (681.3 bits), Expect = 2.0e-198, P = 2.0e-198
Identities = 365/441 (82%), Positives = 403/441 (91%)
Query: 2 EKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 61
EKRD RTVA++ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL
Sbjct: 83 EKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 142
Query: 62 TQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF 121
TQYNSASLNRHLARAYN +G+ FGDG VEVLAATQTPGE+GKRWFQGTADAVRQFHWLF
Sbjct: 143 TQYNSASLNRHLARAYN-SNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHWLF 201
Query: 122 EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN 181
ED R+K IEDVLILSGDHLYRMDYMDF+Q+HRQSGADI+ISC+P+DD RASDFGLMKI++
Sbjct: 202 EDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKIDD 261
Query: 182 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241
+GRV+SFSEKPKG DLKAMAVDTT+LGLSK+EAE+KPYIASMGVY+FKKEILLNLLRWRF
Sbjct: 262 KGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRWRF 321
Query: 242 PTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKP 301
PTANDFGSEIIP SA E ++ AYLFNDYWEDIGTIRSFFEANLALT HP FSFYDA KP
Sbjct: 322 PTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAAKP 381
Query: 302 IYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 361
IYTSRRNLPP HGSF+T+ IEHS+VGIRSR+ +NV LKDT+MLGAD
Sbjct: 382 IYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLGAD 441
Query: 362 FYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGF 421
+YET+AEVA+LLAEG VP+GIGENTKI+ECIIDKNAR+GKNVIIANSEGIQEADRS++GF
Sbjct: 442 YYETEAEVAALLAEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSEGIQEADRSSDGF 501
Query: 422 YIRSGVTVILKNSVITDGFVI 442
YIRSG+TVILKNSVI DG VI
Sbjct: 502 YIRSGITVILKNSVIKDGVVI 522
|
|
| TAIR|locus:2199241 APL2 "ADPGLC-PPase large subunit" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1628 (578.1 bits), Expect = 2.2e-167, P = 2.2e-167
Identities = 298/441 (67%), Positives = 363/441 (82%)
Query: 2 EKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 61
+ D + VA++ILGGGAGTRL+PLT +RAKPAVPIGG YRLID+PMSNCINSGI K++IL
Sbjct: 78 QNADPKNVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFIL 137
Query: 62 TQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF 121
TQ+NS SLNRHL+R YN+G+GV FGDG VEVLAATQT G+AGK+WFQGTADAVRQF W+F
Sbjct: 138 TQFNSFSLNRHLSRTYNFGNGVNFGDGFVEVLAATQTSGDAGKKWFQGTADAVRQFIWVF 197
Query: 122 EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN 181
ED + K +E VLILSGDHLYRMDYM+FVQ H +S ADIT+SCLPMD+SRASDFGL+KI+
Sbjct: 198 EDAKTKNVEHVLILSGDHLYRMDYMNFVQKHIESNADITVSCLPMDESRASDFGLLKIDQ 257
Query: 182 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241
G+++ FSEKPKG DLKAM VDT++LGL +EA E PYIASMGVY+F+KE+LL LLR +
Sbjct: 258 SGKIIQFSEKPKGDDLKAMQVDTSILGLPPKEAAESPYIASMGVYVFRKEVLLKLLRSSY 317
Query: 242 PTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKP 301
PT+NDFGSEIIP + E ++A+LFNDYWEDIGTI SFF+ANLALT PP F FYD P
Sbjct: 318 PTSNDFGSEIIPLAVGEHNVQAFLFNDYWEDIGTIGSFFDANLALTEQPPKFQFYDQKTP 377
Query: 302 IYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 361
+TS R LPP HG F+ ++HS+VGIRSR+ + V L+DTMM+GAD
Sbjct: 378 FFTSPRFLPPTKVDKCRILDSIVSHGCFLRECSVQHSIVGIRSRLESGVELQDTMMMGAD 437
Query: 362 FYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGF 421
FY+T+AE+ASLLAEG+VPVG+G+NTKIK CIIDKNA+IGKNV+IAN++G++E DR EGF
Sbjct: 438 FYQTEAEIASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKNVVIANADGVEEGDRPEEGF 497
Query: 422 YIRSGVTVILKNSVITDGFVI 442
+IRSG+TV+LKN+ I DG I
Sbjct: 498 HIRSGITVVLKNATIRDGLHI 518
|
|
| TAIR|locus:2049364 APL4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1498 (532.4 bits), Expect = 1.3e-153, P = 1.3e-153
Identities = 278/440 (63%), Positives = 350/440 (79%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
K D + VAA+ILGGG G +L+PLT + A PAVP+GG YRLID+PMSNCINS INK+++LT
Sbjct: 85 KVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKIFVLT 144
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
Q+NSASLNRHLAR Y +G+G+ FG G VEVLAATQTPGEAGK+WFQGTADAVR+F W+FE
Sbjct: 145 QFNSASLNRHLARTY-FGNGINFGGGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFE 203
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
D +N+ IE++LILSGDHLYRM+YMDFVQ+H S ADIT+SC P+ +SRAS+FGL+KI+
Sbjct: 204 DAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKIDRG 263
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GRV+ FSEKP G DLK+M DTT+LGLS QEA + PYIASMGVY FK E LLNLL ++P
Sbjct: 264 GRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTRQYP 323
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
++NDFGSE+IPA+ + ++ Y+F DYWEDIGTI++F+EANLAL P F FYD P
Sbjct: 324 SSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPETPF 383
Query: 303 YTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADF 362
YTS R LPP HG F+ ++ S++G RSR++ V L+DT+MLGAD+
Sbjct: 384 YTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQDTLMLGADY 443
Query: 363 YETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFY 422
Y+T++E+ASLLAEG+VP+GIG++TKI++CIIDKNA+IGKNVII N +QEADR EGFY
Sbjct: 444 YQTESEIASLLAEGKVPIGIGKDTKIRKCIIDKNAKIGKNVIIMNKGDVQEADRPEEGFY 503
Query: 423 IRSGVTVILKNSVITDGFVI 442
IRSG+TVI++ + I DG VI
Sbjct: 504 IRSGITVIVEKATIQDGTVI 523
|
|
| TAIR|locus:2136358 APL3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1498 (532.4 bits), Expect = 1.3e-153, P = 1.3e-153
Identities = 274/440 (62%), Positives = 349/440 (79%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+ D + VAA+ILGGG G +L+PLTK+ A PAVP+GG YR+ID+PMSNCINS INK+++LT
Sbjct: 83 RADPKNVAAIILGGGDGAKLFPLTKRAATPAVPVGGCYRMIDIPMSNCINSCINKIFVLT 142
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
Q+NSASLNRHLAR Y +G+G+ FGDG VEVLAATQTPGEAGK+WFQGTADAVR+F W+FE
Sbjct: 143 QFNSASLNRHLARTY-FGNGINFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFE 201
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
D +N+ IE+++ILSGDHLYRM+YMDFVQ+H S ADIT+SC P+D+SRAS++GL+ I+
Sbjct: 202 DAKNRNIENIIILSGDHLYRMNYMDFVQHHVDSKADITLSCAPVDESRASEYGLVNIDRS 261
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GRV+ FSEKP G DLK+M DTT+ GLS QEA + PYIASMGVY FK E LL LL WR+P
Sbjct: 262 GRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEAAKSPYIASMGVYCFKTEALLKLLTWRYP 321
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
++NDFGSEIIPA+ + ++ Y++ DYWEDIGTI+SF+EAN+AL P F FYD P
Sbjct: 322 SSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIGTIKSFYEANIALVEEHPKFEFYDQNTPF 381
Query: 303 YTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADF 362
YTS R LPP HG F+ I+ S++G RSR++ V L+DT+MLGAD
Sbjct: 382 YTSPRFLPPTKTEKCRIVNSVISHGCFLGECSIQRSIIGERSRLDYGVELQDTLMLGADS 441
Query: 363 YETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFY 422
Y+T++E+ASLLAEG VP+GIG +TKI++CIIDKNA+IGKNV+I N + ++EADR EGFY
Sbjct: 442 YQTESEIASLLAEGNVPIGIGRDTKIRKCIIDKNAKIGKNVVIMNKDDVKEADRPEEGFY 501
Query: 423 IRSGVTVILKNSVITDGFVI 442
IRSG+TV+++ + I DG VI
Sbjct: 502 IRSGITVVVEKATIKDGTVI 521
|
|
| TAIR|locus:2156263 ADG1 "ADP glucose pyrophosphorylase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1275 (453.9 bits), Expect = 5.7e-130, P = 5.7e-130
Identities = 245/437 (56%), Positives = 325/437 (74%)
Query: 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA 67
+V +ILGGGAGTRLYPLTK+RAKPAVP+G YRLID+P+SNC+NS I+K+Y+LTQ+NSA
Sbjct: 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 148
Query: 68 SLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNK 127
SLNRHL+RAY G +G VEVLAA Q+P WFQGTADAVRQ+ WLFE+ +
Sbjct: 149 SLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE--HN 204
Query: 128 VIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
V+E LIL+GDHLYRMDY F+Q HR++ ADIT++ LPMD+ RA+ FGLMKI+ EGR++
Sbjct: 205 VLE-YLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEQRATAFGLMKIDEEGRIIE 263
Query: 188 FSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247
F+EKPKG+ LKAM VDTT+LGL Q A+E P+IASMG+Y+ ++++L+LLR +FP ANDF
Sbjct: 264 FAEKPKGEHLKAMKVDTTILGLDDQRAKEMPFIASMGIYVVSRDVMLDLLRNQFPGANDF 323
Query: 248 GSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTS 305
GSE+IP + + ++AYL++ YWEDIGTI +F+ ANL +T P P FSFYD + PIYT
Sbjct: 324 GSEVIPGATSLGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQ 383
Query: 306 RRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYET 365
R LPP G I + I HSVVG+RS I+ ++D++++GAD+YET
Sbjct: 384 PRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYET 443
Query: 366 DAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRS 425
E + L A+G VP+GIG+N+ IK IIDKNARIG NV I NS+ +QEA R +G++I+S
Sbjct: 444 ATEKSLLSAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIINSDNVQEAARETDGYFIKS 503
Query: 426 GVTVILKNSVITDGFVI 442
G+ ++K+++I G VI
Sbjct: 504 GIVTVIKDALIPTGTVI 520
|
|
| UNIPROTKB|P15280 AGPS "Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1265 (450.4 bits), Expect = 6.6e-129, P = 6.6e-129
Identities = 244/441 (55%), Positives = 323/441 (73%)
Query: 5 DART-VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ 63
DA T V +ILGGGAGTRLYPLTK+RAKPAVP+G YRLID+P+SNC+NS I+K+Y+LTQ
Sbjct: 79 DASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ 138
Query: 64 YNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED 123
+NSASLNRHL+RAY G +G VEVLAA Q+P WFQGTADAVRQ+ WLFE+
Sbjct: 139 FNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSPDNPN--WFQGTADAVRQYLWLFEE 196
Query: 124 PRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 183
+ V+E LIL+GDHLYRMDY F+Q HR++ +DIT++ LPMD+ RA+ FGLMKI+ EG
Sbjct: 197 --HNVME-FLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATAFGLMKIDEEG 253
Query: 184 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
R++ F+EKPKG+ LKAM VDTT+LGL A+E PYIASMG+Y+ K ++L LLR +FP
Sbjct: 254 RIVEFAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLLREQFPG 313
Query: 244 ANDFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKP 301
ANDFGSE+IP + N ++AYL++ YWEDIGTI +F+ ANL +T P P FSFYD + P
Sbjct: 314 ANDFGSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAP 373
Query: 302 IYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 361
IYT R+LPP G I + I HSVVG+RS I+ ++D++++GAD
Sbjct: 374 IYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGAD 433
Query: 362 FYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGF 421
+YET+A+ L +G +P+GIG+N I+ IIDKNARIG NV I N + +QEA R +G+
Sbjct: 434 YYETEADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVKIINVDNVQEAARETDGY 493
Query: 422 YIRSGVTVILKNSVITDGFVI 442
+I+SG+ ++K++++ G VI
Sbjct: 494 FIKSGIVTVIKDALLPSGTVI 514
|
|
| TAIR|locus:2032003 APS2 "AT1G05610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 176/441 (39%), Positives = 271/441 (61%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS 66
++VAA++ GGG+ + LYPLTK R+K A+PI YRLID +SNCINSGI K+Y +TQ+NS
Sbjct: 53 QSVAAIVFGGGSDSELYPLTKTRSKGAIPIAANYRLIDAVISNCINSGITKIYAITQFNS 112
Query: 67 ASLNRHLARAYNYGSGVTFG-DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED-P 124
SLN HL++AY SG G D VEV+AA Q+ + G WFQGTADA+R+ W+FE+ P
Sbjct: 113 TSLNSHLSKAY---SGFGLGKDRFVEVIAAYQSLEDQG--WFQGTADAIRRCLWVFEEFP 167
Query: 125 RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 184
+ + L+L G HLY+MDY +++HR+S ADITI L FG M++++
Sbjct: 168 ----VTEFLVLPGHHLYKMDYKMLIEDHRRSRADITIVGLSSVTDHDFGFGFMEVDSTNA 223
Query: 185 VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244
V F+ K + +DL ++A T ++ + + S G+Y+ +E ++ LLR +
Sbjct: 224 VTRFTIKGQ-QDLISVANRTA----TRSDGTSSCSVPSAGIYVIGREQMVKLLRECLIKS 278
Query: 245 NDFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIY 303
D SEIIP + +E +KA++F+ YWED+ +I +++ AN+ + FYD P+Y
Sbjct: 279 KDLASEIIPGAISEGMKVKAHMFDGYWEDVRSIGAYYRANMESIKS---YRFYDRQCPLY 335
Query: 304 TSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFY 363
T R LPP G + I SVVG+R+RI V ++D++++G+D Y
Sbjct: 336 TMPRCLPPSSMSVAVITNSIIGDGCILDKCVIRGSVVGMRTRIADEVIVEDSIIVGSDIY 395
Query: 364 ETDAEVASLLAEGRVPV--GIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGF 421
E + +V E ++ + GIGE ++I+ I+DKNARIGKNV+I N + ++E +R A+G+
Sbjct: 396 EMEEDVRRKGKEKKIEIRIGIGEKSRIRRAIVDKNARIGKNVMIINRDNVEEGNREAQGY 455
Query: 422 YIRSGVTVILKNSVITDGFVI 442
IR G+ +IL+N+VI + ++
Sbjct: 456 VIREGIIIILRNAVIPNDSIL 476
|
|
| TIGR_CMR|SO_1498 SO_1498 "glucose-1-phosphate adenylyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
Identities = 123/314 (39%), Positives = 180/314 (57%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS 66
R A+IL GG G+RL+ LT RAKPA+ GG +R+ID P+SNCINSGI +V ++TQY S
Sbjct: 12 RETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKS 71
Query: 67 ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRN 126
SL RH+ R + + G+ VE+L A+Q E W+QGTADAV Q + R+
Sbjct: 72 HSLIRHVMRGWGHFKK-ELGES-VEILPASQRYSE---NWYQGTADAVFQN---IDIIRH 123
Query: 127 KVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASD-FGLMKINNEGRV 185
++ + V++LSGDH+YRMDY + H +SGAD+T+SCL + + A+ FG+M+++++ R+
Sbjct: 124 ELPKYVMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPVAEAAGAFGVMEVDDDMRI 183
Query: 186 LSFSEKPK------GKDLKAMA-VDTTVLGLSKQ-EAEEKPYIASMGVYLFKKEILLNLL 237
L F EKP+ G K +A + V E +K + F K+I+ +++
Sbjct: 184 LGFEEKPQLPKHCPGNPEKCLASMGNYVFNTEFLFEQLKKDAQNAESDRDFGKDIIPSII 243
Query: 238 RWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYD 297
A F S A NEQ YW D+GT+ SF+ AN+ L + P + YD
Sbjct: 244 EKHKVFAYPFKS----AFPNEQA--------YWRDVGTLDSFWLANMELLSPTPALNLYD 291
Query: 298 ATKPIYTSRRNLPP 311
A PI+T + LPP
Sbjct: 292 AKWPIWTYQEQLPP 305
|
|
| UNIPROTKB|Q9KRB5 glgC1 "Glucose-1-phosphate adenylyltransferase 1" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 124/367 (33%), Positives = 196/367 (53%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS 68
V +IL GG G+RL PLT+ R KPAVP GG+YRLID ++N +N+ + ++Y+LTQ+ S S
Sbjct: 4 VLGMILAGGEGSRLKPLTETRTKPAVPFGGSYRLIDFALNNFVNADLMRIYVLTQFKSQS 63
Query: 69 LNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKV 128
L H+ + +N SG+T D ++++ A G KRW++GTADA+ Q + F + V
Sbjct: 64 LYIHMKKGWNL-SGIT--DRFIDIIPAQMRDG---KRWYEGTADAIYQ-NLRFVEI---V 113
Query: 129 IED-VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
D V I DH+Y+MD + HR+ A++T+S L M S+AS FG+++++ G+++
Sbjct: 114 APDQVCIFGSDHIYKMDIRQMLDFHRRMEAELTVSALRMPISQASQFGVIEVDENGKMVG 173
Query: 188 FSEKPKG-KDLKAMAVDTTV-LG--------LSKQEAEEKPYIASMGVYLFKKEILLNLL 237
F EKP K + V +G LSK+ E+ S + F K+I+ +
Sbjct: 174 FEEKPSNPKSIPGEPEWALVSMGNYIFEAETLSKELREDAENNQSS--HDFGKDIIPKM- 230
Query: 238 RWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYD 297
FP + + + N+ +K + YW D+GTI S++ A++ L P FS Y+
Sbjct: 231 ---FPRGKVY---VYDFTTNK--IKGEKESTYWRDVGTIESYWSAHMDLLDKDPEFSLYN 282
Query: 298 ATKPIYTSRRNLPPXXXXXXXX-----XXXXXXHGSFITSSFIEHSVVGIRSRINANVHL 352
+ P++T LPP GS+I S I SV+G RS I A +
Sbjct: 283 RSWPLHTYYPPLPPATFVDVKDKKVKITDSLISGGSYIQGSTIYKSVLGFRSNIAAGSFI 342
Query: 353 KDTMMLG 359
++++LG
Sbjct: 343 SESVILG 349
|
|
| TIGR_CMR|VC_1727 VC_1727 "glucose-1-phosphate adenylyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 124/367 (33%), Positives = 196/367 (53%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS 68
V +IL GG G+RL PLT+ R KPAVP GG+YRLID ++N +N+ + ++Y+LTQ+ S S
Sbjct: 4 VLGMILAGGEGSRLKPLTETRTKPAVPFGGSYRLIDFALNNFVNADLMRIYVLTQFKSQS 63
Query: 69 LNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKV 128
L H+ + +N SG+T D ++++ A G KRW++GTADA+ Q + F + V
Sbjct: 64 LYIHMKKGWNL-SGIT--DRFIDIIPAQMRDG---KRWYEGTADAIYQ-NLRFVEI---V 113
Query: 129 IED-VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
D V I DH+Y+MD + HR+ A++T+S L M S+AS FG+++++ G+++
Sbjct: 114 APDQVCIFGSDHIYKMDIRQMLDFHRRMEAELTVSALRMPISQASQFGVIEVDENGKMVG 173
Query: 188 FSEKPKG-KDLKAMAVDTTV-LG--------LSKQEAEEKPYIASMGVYLFKKEILLNLL 237
F EKP K + V +G LSK+ E+ S + F K+I+ +
Sbjct: 174 FEEKPSNPKSIPGEPEWALVSMGNYIFEAETLSKELREDAENNQSS--HDFGKDIIPKM- 230
Query: 238 RWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYD 297
FP + + + N+ +K + YW D+GTI S++ A++ L P FS Y+
Sbjct: 231 ---FPRGKVY---VYDFTTNK--IKGEKESTYWRDVGTIESYWSAHMDLLDKDPEFSLYN 282
Query: 298 ATKPIYTSRRNLPPXXXXXXXX-----XXXXXXHGSFITSSFIEHSVVGIRSRINANVHL 352
+ P++T LPP GS+I S I SV+G RS I A +
Sbjct: 283 RSWPLHTYYPPLPPATFVDVKDKKVKITDSLISGGSYIQGSTIYKSVLGFRSNIAAGSFI 342
Query: 353 KDTMMLG 359
++++LG
Sbjct: 343 SESVILG 349
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| B2IUY3 | GLGC_NOSP7 | 2, ., 7, ., 7, ., 2, 7 | 0.5858 | 0.9660 | 0.9953 | yes | no |
| P12300 | GLGL3_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.5922 | 0.9796 | 0.866 | N/A | no |
| A5GLA9 | GLGC_SYNPW | 2, ., 7, ., 7, ., 2, 7 | 0.5684 | 0.9683 | 0.9930 | yes | no |
| Q8EGU3 | GLGC_SHEON | 2, ., 7, ., 7, ., 2, 7 | 0.3609 | 0.8619 | 0.9071 | yes | no |
| Q1ISX7 | GLGC_KORVE | 2, ., 7, ., 7, ., 2, 7 | 0.3438 | 0.8529 | 0.9040 | yes | no |
| Q00081 | GLGL1_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.6689 | 0.9977 | 0.9382 | N/A | no |
| P55229 | GLGL1_ARATH | 2, ., 7, ., 7, ., 2, 7 | 0.8526 | 0.9954 | 0.8429 | yes | no |
| B8HM61 | GLGC_CYAP4 | 2, ., 7, ., 7, ., 2, 7 | 0.5652 | 0.9660 | 0.9953 | yes | no |
| Q21M27 | GLGC_SACD2 | 2, ., 7, ., 7, ., 2, 7 | 0.3466 | 0.8619 | 0.8964 | yes | no |
| B1XLF1 | GLGC_SYNP2 | 2, ., 7, ., 7, ., 2, 7 | 0.5754 | 0.9366 | 0.9650 | yes | no |
| A6WKY5 | GLGC_SHEB8 | 2, ., 7, ., 7, ., 2, 7 | 0.3555 | 0.8529 | 0.8976 | yes | no |
| P55242 | GLGL2_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.6757 | 0.9864 | 0.8400 | N/A | no |
| P55243 | GLGL3_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.8348 | 0.9977 | 0.9130 | N/A | no |
| P55241 | GLGL1_MAIZE | 2, ., 7, ., 7, ., 2, 7 | 0.5671 | 0.9864 | 0.8449 | N/A | no |
| P52416 | GLGS1_VICFA | 2, ., 7, ., 7, ., 2, 7 | 0.5831 | 0.9773 | 0.8503 | N/A | no |
| P52417 | GLGS2_VICFA | 2, ., 7, ., 7, ., 2, 7 | 0.5808 | 0.9773 | 0.8437 | N/A | no |
| P52415 | GLGC_SYNY3 | 2, ., 7, ., 7, ., 2, 7 | 0.5903 | 0.9660 | 0.9726 | N/A | no |
| B1WT08 | GLGC_CYAA5 | 2, ., 7, ., 7, ., 2, 7 | 0.5812 | 0.9660 | 0.9953 | yes | no |
| Q3MBJ4 | GLGC_ANAVT | 2, ., 7, ., 7, ., 2, 7 | 0.5812 | 0.9660 | 0.9953 | yes | no |
| Q31IB9 | GLGC_THICR | 2, ., 7, ., 7, ., 2, 7 | 0.3424 | 0.8552 | 0.8957 | yes | no |
| A9KTJ4 | GLGC_SHEB9 | 2, ., 7, ., 7, ., 2, 7 | 0.3579 | 0.8597 | 0.9047 | yes | no |
| Q42882 | GLGS_SOLLC | 2, ., 7, ., 7, ., 2, 7 | 0.5740 | 0.9773 | 0.8291 | N/A | no |
| Q9M462 | GLGS_BRANA | 2, ., 7, ., 7, ., 2, 7 | 0.5671 | 0.9773 | 0.8307 | N/A | no |
| P12298 | GLGL1_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.7556 | 0.6787 | 0.9966 | N/A | no |
| P12299 | GLGL2_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.6082 | 0.9864 | 0.8352 | N/A | no |
| A3D289 | GLGC_SHEB5 | 2, ., 7, ., 7, ., 2, 7 | 0.3577 | 0.8529 | 0.8976 | yes | no |
| B9L1J9 | GLGC_THERP | 2, ., 7, ., 7, ., 2, 7 | 0.3393 | 0.8642 | 0.8925 | yes | no |
| A0KZD8 | GLGC_SHESA | 2, ., 7, ., 7, ., 2, 7 | 0.3640 | 0.8642 | 0.9095 | yes | no |
| P55233 | GLGL1_BETVU | 2, ., 7, ., 7, ., 2, 7 | 0.6886 | 0.9954 | 0.8429 | N/A | no |
| P55232 | GLGS_BETVU | 2, ., 7, ., 7, ., 2, 7 | 0.5608 | 0.9615 | 0.8691 | N/A | no |
| Q5N3K9 | GLGC_SYNP6 | 2, ., 7, ., 7, ., 2, 7 | 0.5766 | 0.9683 | 0.9953 | yes | no |
| P55234 | GLGL2_MAIZE | 2, ., 7, ., 7, ., 2, 7 | 0.5873 | 0.9864 | 0.8368 | N/A | no |
| P30524 | GLGL1_HORVU | 2, ., 7, ., 7, ., 2, 7 | 0.6059 | 0.9864 | 0.8336 | N/A | no |
| P55238 | GLGS_HORVU | 2, ., 7, ., 7, ., 2, 7 | 0.5694 | 0.9457 | 0.8148 | N/A | no |
| B7KDB8 | GLGC_CYAP7 | 2, ., 7, ., 7, ., 2, 7 | 0.5697 | 0.9660 | 0.9953 | yes | no |
| P30523 | GLGS_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.5670 | 0.9457 | 0.8837 | N/A | no |
| P30521 | GLGC_NOSS1 | 2, ., 7, ., 7, ., 2, 7 | 0.5835 | 0.9660 | 0.9953 | yes | no |
| Q081Q7 | GLGC_SHEFN | 2, ., 7, ., 7, ., 2, 7 | 0.3683 | 0.8529 | 0.8976 | yes | no |
| P23509 | GLGS_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.5671 | 0.9773 | 0.8291 | N/A | no |
| B7K5U7 | GLGC_CYAP8 | 2, ., 7, ., 7, ., 2, 7 | 0.5926 | 0.9660 | 0.9953 | yes | no |
| B8EAW7 | GLGC_SHEB2 | 2, ., 7, ., 7, ., 2, 7 | 0.3555 | 0.8529 | 0.8976 | yes | no |
| Q0HGJ1 | GLGC_SHESM | 2, ., 7, ., 7, ., 2, 7 | 0.3640 | 0.8642 | 0.9095 | yes | no |
| Q31QN4 | GLGC_SYNE7 | 2, ., 7, ., 7, ., 2, 7 | 0.5766 | 0.9683 | 0.9953 | yes | no |
| Q0HST8 | GLGC_SHESR | 2, ., 7, ., 7, ., 2, 7 | 0.3640 | 0.8642 | 0.9095 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 442 | |||
| PLN02241 | 436 | PLN02241, PLN02241, glucose-1-phosphate adenylyltr | 0.0 | |
| PRK02862 | 429 | PRK02862, glgC, glucose-1-phosphate adenylyltransf | 0.0 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 1e-168 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 1e-146 | |
| PRK00844 | 407 | PRK00844, glgC, glucose-1-phosphate adenylyltransf | 1e-106 | |
| PRK00725 | 425 | PRK00725, glgC, glucose-1-phosphate adenylyltransf | 1e-105 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 7e-99 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 3e-87 | |
| cd02508 | 200 | cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory | 4e-75 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 4e-43 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 1e-41 | |
| TIGR02092 | 369 | TIGR02092, glgD, glucose-1-phosphate adenylyltrans | 3e-31 | |
| cd04651 | 104 | cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly | 1e-28 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 2e-25 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 2e-19 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 3e-17 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 5e-17 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 4e-15 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 5e-13 | |
| cd04198 | 214 | cd04198, eIF-2B_gamma_N, The N-terminal domain of | 6e-11 | |
| cd02538 | 240 | cd02538, G1P_TT_short, G1P_TT_short is the short f | 3e-10 | |
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 3e-09 | |
| cd02507 | 216 | cd02507, eIF-2B_gamma_N_like, The N-terminal of eI | 3e-09 | |
| cd06422 | 221 | cd06422, NTP_transferase_like_1, NTP_transferase_l | 5e-08 | |
| TIGR02623 | 254 | TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti | 2e-07 | |
| cd06428 | 257 | cd06428, M1P_guanylylT_A_like_N, N-terminal domain | 2e-07 | |
| cd02523 | 229 | cd02523, PC_cytidylyltransferase, Phosphocholine c | 6e-07 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 2e-06 | |
| cd03356 | 79 | cd03356, LbH_G1P_AT_C_like, Left-handed parallel b | 3e-06 | |
| TIGR01207 | 286 | TIGR01207, rmlA, glucose-1-phosphate thymidylyltra | 6e-06 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 3e-05 | |
| cd04652 | 81 | cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, | 4e-05 | |
| PRK14359 | 430 | PRK14359, glmU, bifunctional N-acetylglucosamine-1 | 7e-05 | |
| PRK14354 | 458 | PRK14354, glmU, bifunctional N-acetylglucosamine-1 | 1e-04 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 3e-04 | |
| cd02541 | 267 | cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca | 3e-04 | |
| PRK15480 | 292 | PRK15480, PRK15480, glucose-1-phosphate thymidylyl | 3e-04 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 4e-04 | |
| cd03356 | 79 | cd03356, LbH_G1P_AT_C_like, Left-handed parallel b | 7e-04 | |
| PRK13389 | 302 | PRK13389, PRK13389, UTP--glucose-1-phosphate uridy | 0.002 |
| >gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 873 bits (2259), Expect = 0.0
Identities = 328/438 (74%), Positives = 385/438 (87%), Gaps = 3/438 (0%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
++VAA+ILGGGAGTRL+PLTK+RAKPAVPIGG YRLID+PMSNCINSGINK+Y+LTQ+N
Sbjct: 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFN 60
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
SASLNRHL+RAYN+G+G FGDG VEVLAATQTPGE G WFQGTADAVRQF WLFED +
Sbjct: 61 SASLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEKG--WFQGTADAVRQFLWLFEDAK 118
Query: 126 NKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 185
NK +E+VLILSGDHLYRMDYMDFVQ HR+SGADITI+CLP+D+SRASDFGLMKI++ GR+
Sbjct: 119 NKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRI 178
Query: 186 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245
+ FSEKPKG +LKAM VDTTVLGLS +EA+EKPYIASMG+Y+FKK++LL LLRWRFPTAN
Sbjct: 179 IEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238
Query: 246 DFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT 304
DFGSEIIP + E + ++AYLF+ YWEDIGTI+SF+EANLALT PP FSFYD PIYT
Sbjct: 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYT 298
Query: 305 SRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYE 364
S R LPPSKI+D +I DSIISHG F+ IEHSVVG+RSRI V ++DT+M+GAD+YE
Sbjct: 299 SPRFLPPSKIEDCRITDSIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYE 358
Query: 365 TDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIR 424
T+ E+ASLLAEG+VP+GIGENTKI+ IIDKNARIGKNV+I N +G+QEADR EG+YIR
Sbjct: 359 TEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIR 418
Query: 425 SGVTVILKNSVITDGFVI 442
SG+ VILKN+VI DG VI
Sbjct: 419 SGIVVILKNAVIPDGTVI 436
|
Length = 436 |
| >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 702 bits (1814), Expect = 0.0
Identities = 258/437 (59%), Positives = 331/437 (75%), Gaps = 10/437 (2%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS 66
+ V A+ILGGGAGTRLYPLTK RAKPAVP+ G YRLID+P+SNCINSGINK+Y+LTQ+NS
Sbjct: 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNS 61
Query: 67 ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRN 126
ASLNRH+++ YN+ F G VEVLAA QTP WFQGTADAVR++ W F++
Sbjct: 62 ASLNRHISQTYNFDG---FSGGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQEWD- 115
Query: 127 KVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 186
+++ LILSGD LYRMDY FVQ+HR++GADIT++ LP+D+ AS FGLMK +++GR+
Sbjct: 116 --VDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRIT 173
Query: 187 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246
FSEKPKG +LKAMAVDT+ LGLS +EA+ KPY+ASMG+Y+F +++L +LL + P D
Sbjct: 174 EFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLN-KNPEYTD 232
Query: 247 FGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTS 305
FG EIIP + + +++YLF+ YWEDIGTI +F+EANLALT P P FSFYD PIYT
Sbjct: 233 FGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTR 292
Query: 306 RRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYET 365
R LPPSK+ D+ I +SII+ G I + I HSV+GIRSRI + ++DT+++GADFYE+
Sbjct: 293 ARYLPPSKLLDATITESIIAEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYES 352
Query: 366 DAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRS 425
E L EG+ P+GIGE T IK IIDKNARIG NV I N + ++EADR +GFYIR
Sbjct: 353 SEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRD 412
Query: 426 GVTVILKNSVITDGFVI 442
G+ V++KN+VI DG VI
Sbjct: 413 GIVVVVKNAVIPDGTVI 429
|
Length = 429 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 476 bits (1228), Expect = e-168
Identities = 178/403 (44%), Positives = 246/403 (61%), Gaps = 48/403 (11%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A++L GG G+RL PLTK+RAKPAVP GG YR+ID P+SNCINSGI ++ +LTQY S SLN
Sbjct: 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLN 60
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
RH+ R +++ F DG V +L A Q E+G W+QGTADAV Q L ED E
Sbjct: 61 RHIQRGWDFD---GFIDGFVTLLPAQQR--ESGTDWYQGTADAVYQNLDLIEDYD---PE 112
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
VLILSGDH+Y+MDY + H +SGAD+TI+C+P+ AS FG+M+++ +GR++ F E
Sbjct: 113 YVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEE 172
Query: 191 KP-KGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR---FPTAND 246
KP + M +ASMG+Y+F K++L LL +++D
Sbjct: 173 KPANPPSIPGM---------------PDFALASMGIYIFDKDVLKELLEEDADDPESSHD 217
Query: 247 FGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSR 306
FG +IIP + E ++AYLF+ YW D+GTI SF+EAN+ L + P F YD PIYT
Sbjct: 218 FGKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYN 277
Query: 307 RNLPPSKIDDS--KIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYE 364
LPP+K DS ++VDS++S G I+ + + HSV+GIR RI + ++D++++G
Sbjct: 278 EFLPPAKFVDSDAQVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD---- 333
Query: 365 TDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 407
VGIG I+ IIDKN RIG+ V+I N
Sbjct: 334 ---------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN 361
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 421 bits (1085), Expect = e-146
Identities = 162/441 (36%), Positives = 242/441 (54%), Gaps = 54/441 (12%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
+ V A+IL GG G+RL PLTK RAKPAVP GG YR+ID +SNC+NSGI ++ +LTQY
Sbjct: 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYK 62
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
S SLN H+ R + + +G V +L A Q G G+RW++GTADA+ Q +
Sbjct: 63 SHSLNDHIGRGWPWDLDRK--NGGVFILPAQQREG--GERWYEGTADAIYQNLLIIRRSD 118
Query: 126 NKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 185
E VLILSGDH+Y+MDY D + H +SGAD+T++ + AS FG+M ++ GR+
Sbjct: 119 ---PEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRI 175
Query: 186 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW---RFP 242
+ F EKP + +ASMG+Y+F ++L LL
Sbjct: 176 IEFVEKPADGP-----PSNS--------------LASMGIYIFNTDLLKELLEEDAKDPN 216
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
+++DFG +IIP + AY F+ YW D+GTI S++EAN+ L + P + YD PI
Sbjct: 217 SSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPI 276
Query: 303 YTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 361
YT +NLPP+K +DS++ +S+++ G I+ + +E+SV+ RI +++++++
Sbjct: 277 YTKNKNLPPAKFVNDSEVSNSLVAGGCIISGT-VENSVLFRGVRIGKGSVIENSVIMPD- 334
Query: 362 FYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGF 421
V IGE ++ IIDKN IG+ V+I + E DR + F
Sbjct: 335 ------------------VEIGEGAVLRRAIIDKNVVIGEGVVIGGDK--PEEDR--KRF 372
Query: 422 YIRSGVTVILKNSVITDGFVI 442
G+ V+ K VI +
Sbjct: 373 RSEEGIVVVPKGMVIKLDIME 393
|
Length = 393 |
| >gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 320 bits (823), Expect = e-106
Identities = 145/450 (32%), Positives = 227/450 (50%), Gaps = 70/450 (15%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS 68
V A++L GG G RL PLT RAKPAVP GG+YRLID +SN +NSG ++Y+LTQY S S
Sbjct: 6 VLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHS 65
Query: 69 LNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKV 128
L+RH+++ + SG+ + + A Q GKRW+ G+ADA+ Q L ED
Sbjct: 66 LDRHISQTWRL-SGLL--GNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIEDEDP-- 117
Query: 129 IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSF 188
+ V++ DH+YRMD V H +SGA +T++ + + AS FG+++++ +GR+ F
Sbjct: 118 -DYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGF 176
Query: 189 SEKPKGKDLKAMAVD-TTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---PTA 244
EKP D + D L ASMG Y+F + L++ LR ++
Sbjct: 177 LEKP--ADPPGLPDDPDEAL-------------ASMGNYVFTTDALVDALRRDAADEDSS 221
Query: 245 NDFGSEIIPASANEQFLKAYLFND------------YWEDIGTIRSFFEANLALTAHPPM 292
+D G +IIP Y F+ YW D+GTI ++++A++ L + P+
Sbjct: 222 HDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPV 281
Query: 293 FSFYDATKPIYTSRRNLPPSKIDDS-----KIVDSIISHGSFITSSFIEHSVVGIRSRIN 347
F+ Y+ PIYTS NLPP+K D DS++S GS I+ + + +SV+ +
Sbjct: 282 FNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVE 341
Query: 348 ANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 407
+ ++D S+L +G V IG ++ I+DKN + I
Sbjct: 342 SGAEVED----------------SVLMDG---VRIGRGAVVRRAILDKNVVVPPGATI-- 380
Query: 408 SEGIQEADRSAEGFYI-RSGVTVILKNSVI 436
G+ + + F + G+ V+ K +
Sbjct: 381 --GV-DLEEDRRRFTVSEGGIVVVPKGQRV 407
|
Length = 407 |
| >gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 319 bits (819), Expect = e-105
Identities = 147/449 (32%), Positives = 234/449 (52%), Gaps = 72/449 (16%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
R A+IL GG G+RL LT +RAKPAV GG +R+ID +SNCINSGI ++ +LTQY
Sbjct: 13 TRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYK 72
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQ-TPGEAGKRWFQGTADAVRQFHWLFEDP 124
+ SL RH+ R +++ G+ V++L A Q E W++GTADAV Q +
Sbjct: 73 AHSLIRHIQRGWSFFRE-ELGEF-VDLLPAQQRVDEEN---WYRGTADAVYQNLDIIRRY 127
Query: 125 RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 184
K V+IL+GDH+Y+MDY + +H +SGAD T++CL + AS FG+M ++ R
Sbjct: 128 DPKY---VVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDR 184
Query: 185 VLSFSEKPKGKDLKAMAVD-TTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
+ +F EKP + AM D L ASMG+Y+F + L LL
Sbjct: 185 ITAFVEKP--ANPPAMPGDPDKSL-------------ASMGIYVFNADYLYELLEEDAED 229
Query: 244 AN---DFGSEIIPASANEQFLKAYLFND-----------YWEDIGTIRSFFEANLALTAH 289
N DFG +IIP E + A+ F+D YW D+GT+ ++++ANL L +
Sbjct: 230 PNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASV 289
Query: 290 PPMFSFYDATKPIYTSRRNLPPSKI----DDSK--IVDSIISHGSFITSSFIEHSVVGIR 343
P YD PI+T + LPP+K + ++S++S G I+ + + SV+ R
Sbjct: 290 TPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSR 349
Query: 344 SRINANVHLKDTMMLGADFYETDAEVASLLAEGRVP-VGIGENTKIKECIIDKNARIGKN 402
R+N+ +++D+++L P V +G + +++ C+ID+ I +
Sbjct: 350 VRVNSFSNVEDSVLL--------------------PDVNVGRSCRLRRCVIDRGCVIPEG 389
Query: 403 VIIANSEGIQEADRSAEGFYI-RSGVTVI 430
++I ++ + A+ F G+ ++
Sbjct: 390 MVIG-----EDPEEDAKRFRRSEEGIVLV 413
|
Length = 425 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 300 bits (771), Expect = 7e-99
Identities = 155/445 (34%), Positives = 222/445 (49%), Gaps = 84/445 (18%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL GG GTRL LTK AKPAVP GG YR+ID +SNC NSGI+ V +LTQY LN
Sbjct: 6 AMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELN 65
Query: 71 RHLARAYNYGSGVTFG----DGCVEVLAATQTPGEAGKRWFQGTADAVRQ-FHWLFE-DP 124
H+ G G + +G V +L G +W++GTA A+ Q ++ + DP
Sbjct: 66 NHI------GIGSPWDLDRINGGVTILPPYS--ESEGGKWYKGTAHAIYQNIDYIDQYDP 117
Query: 125 RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL--PMDDSRASDFGLMKINNE 182
E VLILSGDH+Y+MDY + H++ AD+TI+ + P ++ AS FG+M +
Sbjct: 118 -----EYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEE--ASRFGIMNTDEN 170
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
R++ F EKPK K +ASMG+Y+F + L L
Sbjct: 171 MRIVEFEEKPK---------------------NPKSNLASMGIYIFNWKRLKEYLIEDEK 209
Query: 243 TAN---DFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDA 298
N DFG +IP E L AY F YW+D+GTI S +EAN+ L + +D
Sbjct: 210 NPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDR 269
Query: 299 TKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMM 357
IY+ NLPP I +++K+ +S++ G + + +EHSV+ ++ +KD+++
Sbjct: 270 NWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVVYGT-VEHSVLFQGVQVGEGSVVKDSVI 328
Query: 358 LGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRS 417
+ A+ IGEN I+ II +NA IG VII + +
Sbjct: 329 M------PGAK-------------IGENVVIERAIIGENAVIGDGVIIGGGKEV------ 363
Query: 418 AEGFYIRSGVTVILKNSVITDGFVI 442
+TVI +N VI G VI
Sbjct: 364 ---------ITVIGENEVIGVGTVI 379
|
Length = 380 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 265 bits (681), Expect = 3e-87
Identities = 89/283 (31%), Positives = 131/283 (46%), Gaps = 45/283 (15%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINK-VYILTQYNSASL 69
A+IL GG+GTRL+PLT+ AKP VP+ Y +I +S +N+GI + + I TQ + +
Sbjct: 2 AIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFLV 61
Query: 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVI 129
L +G ++V A Q GTA AV D +
Sbjct: 62 AEQLGDGSKFG---------LQVTYALQPEPR-------GTAPAVALAADFLGD--DDP- 102
Query: 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 189
E VL+L GDH+YRMD+ + VQ R AD T++ + + +G+++ + GRV+ F
Sbjct: 103 ELVLVLGGDHIYRMDFEEAVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDENGRVIRFV 162
Query: 190 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR--WRFPTANDF 247
EKP + ASMG+Y F + L L + D
Sbjct: 163 EKPDL--------------------PKASNYASMGIYFFNSGVFLFLAKYLKELARGEDE 202
Query: 248 GSEIIPASANEQFLK-AYLFND--YWEDIGTIRSFFEANLALT 287
++ IPA+ + L A+LF YW D+GT S +EANL L
Sbjct: 203 ITDAIPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWEANLKLL 245
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Score = 233 bits (596), Expect = 4e-75
Identities = 103/264 (39%), Positives = 129/264 (48%), Gaps = 65/264 (24%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL GG GTRL PLTK+RAKPAVP GG YRLID P+SN +NSGI V +LTQY S SLN
Sbjct: 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLN 60
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
HL + G + +L Q G W++GTADA+ Q E E
Sbjct: 61 DHLGSGKEWD-LDRKNGG-LFILPPQQRKGG---DWYRGTADAIYQNLDYIERSDP---E 112
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
VLILSGDH+Y MDY + + H +SGA
Sbjct: 113 YVLILSGDHIYNMDYREMLDFHIESGA--------------------------------- 139
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF-PTANDFGS 249
D TV+ Y ASMG+Y+F K++L+ LL ++DFG
Sbjct: 140 ------------DITVV-----------YKASMGIYIFSKDLLIELLEEDAADGSHDFGK 176
Query: 250 EIIPASANEQFLKAYLFNDYWEDI 273
+IIPA + + AY FN YW DI
Sbjct: 177 DIIPAMLKKLKIYAYEFNGYWADI 200
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 4e-43
Identities = 71/264 (26%), Positives = 119/264 (45%), Gaps = 47/264 (17%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL G GTRL PLT R KP +PI G +++ + +GI+++ ++ Y +
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPIAG-KPILEYIIERLARAGIDEIILVVGYLGEQIE 59
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ +G + + Q GTA AVR D +
Sbjct: 60 EYFGDGSKFGVNIEY---------VVQEEPL-------GTAGAVRNAEDFLGD------D 97
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
D L+++GD L +D + ++ HR+ GAD TI+ ++D S +G+++++++GRV F E
Sbjct: 98 DFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVED--PSRYGVVELDDDGRVTRFVE 155
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
KP + +A+ G+Y+F+ EI L+ + P D ++
Sbjct: 156 KPT---------------------LPESNLANAGIYIFEPEI-LDYIPEILPRGEDELTD 193
Query: 251 IIPASANEQFLKAYLFNDYWEDIG 274
IP E + Y + YW DIG
Sbjct: 194 AIPLLIEEGKVYGYPVDGYWLDIG 217
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 1e-41
Identities = 100/404 (24%), Positives = 164/404 (40%), Gaps = 80/404 (19%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG GTRL PLT R KP +PI G LI+ + +G+ ++ ++ Y +
Sbjct: 4 AVILAGGYGTRLRPLTDDRPKPLLPIAG-KPLIEYVLEALAAAGVEEIVLVVGYLGEQIE 62
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQF-HWLFEDPRNKVI 129
+ G +T+ V GTA A++ L
Sbjct: 63 EYFGDGEGLGVRITY----VVEKEPL------------GTAGALKNALDLL-------GG 99
Query: 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGRVLSF 188
+D L+L+GD L +D + ++ H++ GA TI+ + D S+FG+++ + +GRV+ F
Sbjct: 100 DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLD--PSEFGVVETDDGDGRVVEF 157
Query: 189 SEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFG 248
EKP E + + G+Y+F E+ + DF
Sbjct: 158 REKPG-------------------PEEPPSNLINAGIYIFDPEVFDYI---EKGERFDFE 195
Query: 249 SEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEAN-LALTAHPPMFSFYDATKPIYTSR 306
E++PA A + + + Y+F YW DIGT EAN L L +
Sbjct: 196 EELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS 255
Query: 307 RNL-PPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYET 365
+ P I + I G+ I ++V+G I V +K+
Sbjct: 256 AYIIGPVVIGPG----AKIGPGALIGP----YTVIGEGVTIGNGVEIKN----------- 296
Query: 366 DAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSE 409
S++ + V IG + I + II +N +IG ++II +
Sbjct: 297 -----SIIMDN---VVIGHGSYIGDSIIGENCKIGASLIIGDVV 332
|
Length = 358 |
| >gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 3e-31
Identities = 100/417 (23%), Positives = 177/417 (42%), Gaps = 74/417 (17%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS 66
++A+I + L PLTK R ++P GG YRLID P+SN +N+GI V+I +
Sbjct: 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKE 60
Query: 67 -ASLNRHLARAYNYGSGV-----TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
SL HL GSG DG + G + R F
Sbjct: 61 RQSLFDHL------GSGREWDLHRKRDGLFVFPYNDRDDLSEGGK---------RYFSQN 105
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
E + E ++L+ + +D ++ H ++G DIT+ + + AS++ +
Sbjct: 106 LEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRF 165
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
+E S K G++L + +E E S+ +Y+ ++L+ LL
Sbjct: 166 DE----SGKVKSIGQNL------------NPEEEENI----SLDIYIVSTDLLIELLY-- 203
Query: 241 FPTANDFGSEIIPASANEQFLK-----AYLFNDYWEDIGTIRSFFEANLALTAHPPMFS- 294
G + LK AY + Y +I +++S+++AN+ L P F
Sbjct: 204 --ECIQRGKLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLL-DPQNFQS 260
Query: 295 -FYDATKPIYTSRRNLPPSK-IDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHL 352
FY + PIYT ++ PP+ ++SK+ +S++++G I +E+S++ + + +
Sbjct: 261 LFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCIIEGK-VENSILSRGVHVGKDALI 319
Query: 353 KDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSE 409
K+ +++ IGE ++ IIDK+ I NV IA +
Sbjct: 320 KNCIIM------QRTV-------------IGEGAHLENVIIDKDVVIEPNVKIAGTS 357
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 369 |
| >gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 107 bits (271), Expect = 1e-28
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 23/127 (18%)
Query: 310 PPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEV 369
PP ++ +S++S G I+ +E+SV+ R+ + ++D++++
Sbjct: 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN--------- 51
Query: 370 ASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429
VGIG N I+ IIDKN I V+I A + G+ V
Sbjct: 52 ----------VGIGRNAVIRRAIIDKNVVIPDGVVIGGDPEEDR----ARFYVTEDGIVV 97
Query: 430 ILKNSVI 436
+ K VI
Sbjct: 98 VGKGMVI 104
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-25
Identities = 67/273 (24%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG GTRL + K KP P+ G ++ + GI+++ + Y + +
Sbjct: 1 AVILAGGLGTRLRSVVKDLPKPLAPVAG-RPFLEYLLEYLARQGISRIVLSVGYLAEQIE 59
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ Y G P GT A++ K+ E
Sbjct: 60 EYFGDGYR--------GGIRIYYVIEPEP--------LGTGGAIKNA-------LPKLPE 96
Query: 131 D-VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 189
D L+L+GD + +D + + R SGAD T++ + D AS +G + ++ +GRV++F
Sbjct: 97 DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYGNVTVDGDGRVIAFV 154
Query: 190 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS 249
EK G I GVYL +KEIL + F +
Sbjct: 155 EKGPG--------------------AAPGLING-GVYLLRKEILAEIPADAF----SLEA 189
Query: 250 EIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282
+++PA L + + Y+ DIG + A
Sbjct: 190 DVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 67/287 (23%), Positives = 114/287 (39%), Gaps = 71/287 (24%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
VIL GG+GTRL PLT+ K +P+ +I P+ + +GI + I+
Sbjct: 3 GVILAGGSGTRLRPLTRVVPKQLLPVYD-KPMIYYPLETLMLAGIRDILIVVGPEDKPTF 61
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ L G G FG V++ A Q E G A AV + ED +
Sbjct: 62 KEL-----LGDGSDFG---VDITYAVQ--PEPD-----GLAHAV----LIAEDFVGD--D 100
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
D ++ GD++++ + +++ + G+ TI +DD +G+++ + +G+V+ E
Sbjct: 101 DFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSR--YGVVEFDEDGKVIGLEE 158
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
KPK E K +A G+Y + + + +
Sbjct: 159 KPK---------------------EPKSNLAVTGLYFYDPSVF------------EAIKQ 185
Query: 251 IIP--------ASANEQFLK------AYLFNDYWEDIGTIRSFFEAN 283
I P A + +++ A L +W D GT S EAN
Sbjct: 186 IKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEAN 232
|
Length = 286 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 3e-17
Identities = 61/288 (21%), Positives = 109/288 (37%), Gaps = 83/288 (28%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
VI+ GG GTRL PLT+ KP + +GG +++ + I G YI Y +
Sbjct: 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLA---- 55
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRW-----------FQGTADAVRQFHW 119
+ Y FGD G ++ GTA A+
Sbjct: 56 -EMIEDY-------FGD---------------GSKFGVNISYVREDKPLGTAGALSLL-- 90
Query: 120 LFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASD----FG 175
K + L+++GD L ++Y + H+++ AD T+ R + +G
Sbjct: 91 -----PEKPTDPFLVMNGDILTNLNYEHLLDFHKENNADATVCV------REYEVQVPYG 139
Query: 176 LMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLN 235
+++ GR+ S EKP ++ + G+Y+ + E+L
Sbjct: 140 VVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDL 175
Query: 236 LLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEAN 283
+ + F D ++I + + + ++YW DIG + +AN
Sbjct: 176 IPKNEFFDMPDLIEKLI---KEGKKVGVFPIHEYWLDIGRPEDYEKAN 220
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 5e-17
Identities = 67/288 (23%), Positives = 107/288 (37%), Gaps = 75/288 (26%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
+IL GG GTRL PLT R K +P+ G +I + + +GI + I+ +
Sbjct: 3 GLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIK 61
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAV-RQFHWLFEDPRNKVI 129
L +G +T+ + G A AV +L ++P
Sbjct: 62 EALGDGSRFGVRITYI--------------LQEEP--LGLAHAVLAARDFLGDEPF---- 101
Query: 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 189
V+ L GD+L + V++ + AD +I ++D R FG+ +++ GR++
Sbjct: 102 --VVYL-GDNLIQEGISPLVRDFLEEDADASILLAEVEDPRR--FGVAVVDD-GRIVRLV 155
Query: 190 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS 249
EKPK E +A +GVY F I D S
Sbjct: 156 EKPK---------------------EPPSNLALVGVYAFTPAIF------------DAIS 182
Query: 250 EIIPASANE-------QFL-------KAYLFNDYWEDIGTIRSFFEAN 283
+ P+ E Q+L + +W+D GT EAN
Sbjct: 183 RLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEAN 230
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-15
Identities = 65/279 (23%), Positives = 113/279 (40%), Gaps = 57/279 (20%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL G GTR+ PLT+ R KP +P+ G L++ + ++GI+ + Y +
Sbjct: 3 AVILAAGKGTRMRPLTETRPKPMLPVAGK-PLLEHIIEALRDAGIDDFVFVVGYGKEKVR 61
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ G + + Q GTADA+ + V +
Sbjct: 62 EYFGDGSRGGVPIEY---------VVQEEQL-------GTADALGS-------AKEYVDD 98
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
+ L+L+GD L D ++ + + A I+ + +DD SD+G+++ + GRV E
Sbjct: 99 EFLVLNGDVLLDSDLLERLIR---AEAP-AIAVVEVDD--PSDYGVVETDG-GRVTGIVE 151
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
KP + + G+YLF EI L + + ++ E
Sbjct: 152 KP---------------------ENPPSNLINAGIYLFSPEIFELLEKTKLSPRGEY--E 188
Query: 251 I---IPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286
+ + +E +KA + +W D+G +AN AL
Sbjct: 189 LTDALQLLIDEGKVKAVELDGFWLDVGRPWDLLDANEAL 227
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-13
Identities = 88/412 (21%), Positives = 147/412 (35%), Gaps = 99/412 (24%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G GTRL PLT R K +P+ ++ + + +GI + I+ +
Sbjct: 2 ALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEI 60
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ + G G FG ++ Q G+ G A AV D +
Sbjct: 61 KEI-----VGEGERFG---AKITYIVQ-----GEP--LGLAHAVYTARDFLGD------D 99
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
D ++ GD+L + FV++ + D I + D A FG+ + + R+L E
Sbjct: 100 DFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTA--FGVAVLEDGKRILKLVE 157
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
KPK E +A +G+Y+F+ P +
Sbjct: 158 KPK---------------------EPPSNLAVVGLYMFR------------PLIFEAIKN 184
Query: 251 IIPASANE-------QFL-------KAYLFNDYWEDIGTIRSFFEANLAL--TAHPPMFS 294
I P+ E Q+L +W+D G +AN + +
Sbjct: 185 IKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQG 244
Query: 295 FYDATKPIYTSRRNLPP-SKIDDSKIVD-SIISHGSFITSSFIEH-SVVGIRSRINANVH 351
D +K R + +KI +S I ++I I +S+I + +G I
Sbjct: 245 VDDESK--IRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIR---- 298
Query: 352 LKDTMMLGADFYETDAEVA-SLLAEGRVPVGIGENTKIKECIIDKNARIGKN 402
DAEV S++ + V G+ +I + +I K RI N
Sbjct: 299 --------------DAEVEHSIVLDESVIEGVQ--ARIVDSVIGKKVRIKGN 334
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 6e-11
Identities = 50/244 (20%), Positives = 90/244 (36%), Gaps = 53/244 (21%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG G+RLYPLT K +P+ +I P+ +G V ++ +
Sbjct: 3 AVILAGGGGSRLYPLTDNIPKALLPVAN-KPMIWYPLDWLEKAGFEDVIVVVPEEEQAEI 61
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
R++ EV GTAD++R K+ +
Sbjct: 62 STYLRSFPLNLKQKL----DEVTIVLDED--------MGTADSLRHIR-------KKIKK 102
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
D L+LS D + + ++ V HR A +++ L + S + + S+
Sbjct: 103 DFLVLSCDLITDLPLIELVDLHRSHDA--SLTVL-LYPPPVS-------SEQKGGKGKSK 152
Query: 191 KPKGKDLKAMAVDTT---VLGLSKQEAEEKPYIASMG------------------VYLFK 229
K +D+ + +D +L ++ +E ++ VY+FK
Sbjct: 153 KADERDV--IGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFK 210
Query: 230 KEIL 233
+ +L
Sbjct: 211 RWVL 214
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 |
| >gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 3e-10
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 36/211 (17%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
+IL GG+GTRLYPLTK +K +P+ +I P+S + +GI ++ I++
Sbjct: 3 GIILAGGSGTRLYPLTKVVSKQLLPV-YDKPMIYYPLSTLMLAGIREILIIST------P 55
Query: 71 RHLARAYN-YGSGVTFGDGCVEVLAATQ-TPGEAGKRWFQGTADAVRQFHWLFEDPRNKV 128
L G G G + + A Q PG G A A + E+
Sbjct: 56 EDLPLFKELLGDGSDLG---IRITYAVQPKPG--------GLAQAF----IIGEEFIGD- 99
Query: 129 IEDVLILSGDHLYR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
+ V ++ GD+++ +Q T+ ++D +G+++ + GRVLS
Sbjct: 100 -DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPER--YGVVEFDENGRVLS 156
Query: 188 FSEKPKGKDLKAMAV------DTTVLGLSKQ 212
EKPK K AV D V ++KQ
Sbjct: 157 IEEKPK-KPKSNYAVTGLYFYDNDVFEIAKQ 186
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 3e-09
Identities = 70/280 (25%), Positives = 109/280 (38%), Gaps = 62/280 (22%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGINKVYILTQYN 65
A+IL GG GTRL PLT KP V + PM +G+ ++ + Y
Sbjct: 3 ALILVGGYGTRLRPLTLTVPKPLVEFC------NKPMIEHQIEALAKAGVKEIILAVNYR 56
Query: 66 SASLNRHLARAYN--YGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED 123
+ L + Y G +TF +E P GTA + L D
Sbjct: 57 PEDMVPFL-KEYEKKLGIKITFS---IE-----TEP--------LGTAGPLA----LARD 95
Query: 124 PRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN-NE 182
E +L+ D + + + H++ GA+ TI ++D S +G++ + N
Sbjct: 96 LLGDDDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVEDP--SKYGVVVHDENT 153
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GR+ F EKPK V + + G+Y+ + L+ + R P
Sbjct: 154 GRIERFVEKPKVF------VGNKI---------------NAGIYILNPSV-LDRIPLR-P 190
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282
T+ EI P A+E L AY +W DIG + F +
Sbjct: 191 TS--IEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKG 228
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-09
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 18/128 (14%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AV+L G G+R PLT K +P+ LID + +G+ +V+++ +S ++
Sbjct: 3 AVVLADGFGSRFLPLTSDIPKALLPVANVP-LIDYTLEWLEKAGVEEVFVVCCEHSQAII 61
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
HL ++ + G A +R D R +
Sbjct: 62 EHLLKSKWSSLSSKMIVDVITSDLCESA----------GDALRLR-------DIRGLIRS 104
Query: 131 DVLILSGD 138
D L+LS D
Sbjct: 105 DFLLLSCD 112
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 |
| >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 5e-08
Identities = 56/277 (20%), Positives = 100/277 (36%), Gaps = 62/277 (22%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G GTR+ PLT R KP VP+ G LID + +GI ++ + T + + +
Sbjct: 2 AMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIE 60
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQ-FHWLFEDPRNKVI 129
HL + +G +T D E+L T +++ L ++P
Sbjct: 61 AHLGDS-RFGLRITISDEPDELL---------------ETGGGIKKALPLLGDEP----- 99
Query: 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRAS----DFGLMKINNEGRV 185
L+++GD L+ D + H D + LP+ + DF L + +GR+
Sbjct: 100 --FLVVNGDILWDGDLAPLLLLHAWR-MDALLLLLPLVRNPGHNGVGDFSL---DADGRL 153
Query: 186 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245
P+ + G+ + E+ + +F
Sbjct: 154 RRGGGGAVA-----------------------PFTFT-GIQILSPELFAGIPPGKFSLN- 188
Query: 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282
+ + L +++ W D+GT A
Sbjct: 189 ----PLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 |
| >gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 57/203 (28%), Positives = 80/203 (39%), Gaps = 41/203 (20%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG GTR+ T R KP V IGG L + M + GIN I Y +
Sbjct: 2 AVILAGGLGTRISEETHLRPKPMVEIGGKPILWHI-MKIYSHHGINDFIICCGYKGYVIK 60
Query: 71 RHLARAYNYGSGVTF--GDGCVEVL---------------AATQTPGEAGKRWFQGTADA 113
+ A + + S VTF D +EV +TQT G +
Sbjct: 61 EYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKR--------- 111
Query: 114 VRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASD 173
VR++ +D E GD + +D + HR+ G T++ +
Sbjct: 112 VREY---LDD------EAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV----QPPGR 158
Query: 174 FGLMKINNEGRVLSFSEKPKGKD 196
FG + + E +V SF EKP G
Sbjct: 159 FGALDLEGE-QVTSFQEKPLGDG 180
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254 |
| >gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 65/301 (21%), Positives = 104/301 (34%), Gaps = 75/301 (24%)
Query: 11 AVILGGGA--GTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSA 67
AVIL GG GTR PL+ KP P+ G +I + C + +V ++ Y +
Sbjct: 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAG-KPMIHHHIEACAKVPDLKEVLLIGFYPES 59
Query: 68 SLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ-----GTADAVRQFH--WL 120
+ ++ A V R+ Q GTA + F L
Sbjct: 60 VFSDFISDAQQE-FNVPI-------------------RYLQEYKPLGTAGGLYHFRDQIL 99
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFG-LMKI 179
+P +L+ D + ++ H++ GA TI +AS++G +++
Sbjct: 100 AGNP-----SAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVED 154
Query: 180 NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL------ 233
+ G VL + EKP+ V + + GVYLF EI
Sbjct: 155 PSTGEVLHYVEKPETF------VSD---------------LINCGVYLFSPEIFDTIKKA 193
Query: 234 LNLLRWRFPTANDFGSE-----------IIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282
+ +D E ++ A L Y +D+W I T S A
Sbjct: 194 FQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYA 253
Query: 283 N 283
N
Sbjct: 254 N 254
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257 |
| >gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 6e-07
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G G+RL PLT+ R K + I G L++ + +GI+ + I+T Y +
Sbjct: 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIE 59
Query: 71 RHLARAYN 78
L + N
Sbjct: 60 ELLKKYPN 67
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-06
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 17/65 (26%)
Query: 382 IGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV----ILKNSVIT 437
IGE T IK +I +N +IGKNV+I NS YI VT+ + +S++
Sbjct: 8 IGEGTTIKNSVIGRNCKIGKNVVIDNS-------------YIWDDVTIEDGCTIHHSIVA 54
Query: 438 DGFVI 442
DG VI
Sbjct: 55 DGAVI 59
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-06
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 19/77 (24%)
Query: 332 SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 391
++ I++SV+G RI V + + S+L + V IG N+ I +
Sbjct: 11 NAIIKNSVIGDNVRIGDGVTITN----------------SILMDN---VTIGANSVIVDS 51
Query: 392 IIDKNARIGKNVIIANS 408
II NA IG+NV + N
Sbjct: 52 IIGDNAVIGENVRVVNL 68
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79 |
| >gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 6e-06
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 35/188 (18%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYR--LIDVPMSNCINSGINKVYILTQYNSASL 69
+IL GG+GTRLYP+T+ +K +PI Y +I P+S + +GI + I++
Sbjct: 3 IILAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 59
Query: 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVI 129
+ L G G +G V + A Q + G A A F + +
Sbjct: 60 FQQL-----LGDGSQWG---VNLSYAVQPSPD-------GLAQA-------FIIGEDFIG 97
Query: 130 ED--VLILSGDHLYRMDYMDFVQ--NHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 185
D L+L + Y D D ++ R+SGA + + D R +G+++ ++ GR
Sbjct: 98 GDPSALVLGDNIFYGHDLSDLLKRAAARESGATV-FAYQVSDPER---YGVVEFDSNGRA 153
Query: 186 LSFSEKPK 193
+S EKP
Sbjct: 154 ISIEEKPA 161
|
Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 51/231 (22%), Positives = 86/231 (37%), Gaps = 52/231 (22%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYR-LIDVPMSNCINSGINKVYILTQYNSASL 69
AVIL G GTR+ K P+ G + +++ + G +++ ++ +
Sbjct: 1 AVILAAGKGTRMK---SDLPKVLHPLAG--KPMLEHVLDAARALGPDRIVVVVGHG---- 51
Query: 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVI 129
+ V F VL Q GT AV+Q
Sbjct: 52 -AEQVKKALANPNVEF------VLQEEQ----------LGTGHAVKQA-LPALKDFE--- 90
Query: 130 EDVLILSGDH-LYRMDYM-DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
DVL+L GD L + + ++ HR++GAD+T+ ++D + +G + + G+VL
Sbjct: 91 GDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED--PTGYGRIIRDGNGKVLR 148
Query: 188 FSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238
E+ KD E E+ + G+Y F E L L
Sbjct: 149 IVEE---KDAT--------------EEEKAIREVNAGIYAFDAEFLFEALP 182
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 4e-05
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 17/65 (26%)
Query: 382 IGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV----ILKNSVIT 437
+GE T IK +I N +IGK V I N I VT+ L+N +I
Sbjct: 8 VGEKTSIKRSVIGANCKIGKRVKITNC-------------VIMDNVTIEDGCTLENCIIG 54
Query: 438 DGFVI 442
+G VI
Sbjct: 55 NGAVI 59
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 81 |
| >gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 79/337 (23%), Positives = 123/337 (36%), Gaps = 84/337 (24%)
Query: 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQ-----NHRQSGADITI 161
+ GT A+ +P++ E VLIL+GD M V+ ++ ADI +
Sbjct: 79 YPGTGGALMGI-----EPKH---ERVLILNGD-------MPLVEKDELEKLLENDADIVM 123
Query: 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIA 221
S + D +G + I N G+V E+ KD E E K
Sbjct: 124 SVFHLAD--PKGYGRVVIEN-GQVKKIVEQ---KDAN--------------EEELKIKSV 163
Query: 222 SMGVYLFKKEILLNLL---------RWRFPT-----ANDFGSEIIPASANEQFLKAYLFN 267
+ GVYLF +++L L + + T A + G I +E+ N
Sbjct: 164 NAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMG--VN 221
Query: 268 DYW-----EDI--GTIRSFFEANLALTAHPPMFSFYDATKP------IYTSRRNLPPSKI 314
+ E+I I+ + P + ++ + R L SKI
Sbjct: 222 SKFELAKAEEIMQERIKKNAMKQ-GVIMRLPETIYIESGVEFEGECELEEGVRILGKSKI 280
Query: 315 DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLA 374
+S I S I S IE+S VG + I +K+T + +F ET A L
Sbjct: 281 -----ENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHI--GNFVETKN--AKLNG 331
Query: 375 EGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGI 411
V G + + +C ID+ IG I N +G
Sbjct: 332 -----VKAGHLSYLGDCEIDEGTNIGAGTITCNYDGK 363
|
Length = 430 |
| >gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 317 SKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA-----DFYETDAEVAS 371
S+IVDS I G IT+S IE S VG + HL+ ++G +F E
Sbjct: 296 SRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKST-- 353
Query: 372 LLAEGRVPVGIGENTKIKECIIDKNARIGKNV 403
IGE TK+ +A +G+NV
Sbjct: 354 ----------IGEGTKVSHLTYIGDAEVGENV 375
|
Length = 458 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 3e-04
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 20/84 (23%)
Query: 323 IISHGSFI-TSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 381
+I G+ I + I++SV+G +I NV + + S + + V
Sbjct: 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDN----------------SYIWDD---VT 41
Query: 382 IGENTKIKECIIDKNARIGKNVII 405
I + I I+ A IGK I
Sbjct: 42 IEDGCTIHHSIVADGAVIGKGCTI 65
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 60/292 (20%), Positives = 110/292 (37%), Gaps = 46/292 (15%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVI G GTR P TK K +PI +I + + +GI + I+T ++
Sbjct: 3 AVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIE 61
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF--Q----GTADAV-RQFHWLFED 123
H R+Y + G ++L + + + Q G AV ++ ++
Sbjct: 62 DHFDRSYELEETLEK-KGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDE 120
Query: 124 PRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI---- 179
P ++ D LI S + + + ++ + ++GA + I+ + S +G++K
Sbjct: 121 PFAVLLGDDLIDSKEP--CLKQL--IEAYEKTGASV-IAVEEVPPEDVSKYGIVKGEKID 175
Query: 180 NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239
+ +V EKPK E +A +G Y+ +I ++L
Sbjct: 176 GDVFKVKGLVEKPK-------------------PEEAPSNLAIVGRYVLTPDI-FDILE- 214
Query: 240 RFPTANDFGSEI-----IPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286
G EI I E+ + AY+F D G + +A +
Sbjct: 215 NTKP--GKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEF 264
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267 |
| >gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 31/190 (16%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYN 65
+T +IL GG+GTRLYP+T +K +PI +I P+S + +GI + I+ T +
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
+ + L +G + + Q + D + Q + E+
Sbjct: 61 TPRFQQLLGDGSQWGLNLQYK--------------------VQPSPDGLAQAFIIGEEFI 100
Query: 126 NKVIEDVLILSGDHL-YRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFGLMKINNE 182
+D ++ GD++ Y D ++ +++SGA T+ ++D +G+++ +
Sbjct: 101 GG--DDCALVLGDNIFYGHDLPKLMEAAVNKESGA--TVFAYHVNDPER--YGVVEFDQN 154
Query: 183 GRVLSFSEKP 192
G +S EKP
Sbjct: 155 GTAISLEEKP 164
|
Length = 292 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 97/461 (21%), Positives = 157/461 (34%), Gaps = 126/461 (27%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAV--PIGGAYRLIDVPMSNCINSGINKVYILTQY 64
+++AVIL G GTR+ P V P+ G PM +++
Sbjct: 1 MSLSAVILAAGKGTRMK-----SDLPKVLHPVAG------KPMLE---------HVIDAA 40
Query: 65 NSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF-----QGTADAVRQFHW 119
+ + + V G G +V A + + GT AV Q
Sbjct: 41 RALGPDDIV---------VVVGHGAEQVREALAERDDV--EFVLQEEQLGTGHAVLQALP 89
Query: 120 LFEDPRNKVIEDVLILSGDH-LYRMDYM-DFVQNHRQSGADITISCLPMDDSRASDFGLM 177
D + DVL+L GD L + + + + H GA T+ +DD + +G +
Sbjct: 90 ALADDYD---GDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDD--PTGYGRI 144
Query: 178 KINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP--YIASMGVYLFKKEILLN 235
+ G V + E+ KD EEK I + G+Y F LL
Sbjct: 145 VRDGNGEVTAIVEE---KDA---------------SEEEKQIKEINT-GIYAFDGAALLR 185
Query: 236 LLRWRFPTANDFG----SEIIP-ASANEQFLKAYLFNDYWEDIG--------TIRSFFEA 282
L + N G +++I A + ++A +D E +G +
Sbjct: 186 ALP-KLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQR 244
Query: 283 NLA-------LTAHPPMFSFYDATKP------IYTSRRNLPPSKI-DDSKI------VDS 322
+A +T P ++ I + + I D+ I DS
Sbjct: 245 RIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDS 304
Query: 323 IISHGSFITS-SFIEHSVVGIRSRINANVHLKDTMMLGAD-----FYET-DAEVASLLAE 375
+I + I + S IE S VG + + L+ +LGAD F E A
Sbjct: 305 VIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKAT------- 357
Query: 376 GRVPVGIGENTK------IKECIIDKNARIGKNVIIANSEG 410
IG+ +K + + I +N IG I N +G
Sbjct: 358 ------IGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDG 392
|
Length = 460 |
| >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 7e-04
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 17/65 (26%)
Query: 382 IGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV----ILKNSVIT 437
IGEN IK +I N RIG V I NS + VT+ ++ +S+I
Sbjct: 8 IGENAIIKNSVIGDNVRIGDGVTITNS-------------ILMDNVTIGANSVIVDSIIG 54
Query: 438 DGFVI 442
D VI
Sbjct: 55 DNAVI 59
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79 |
| >gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGI 55
M + + AVI G GTR+ P TK K +P L+D P+ + CI +GI
Sbjct: 1 MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLP------LVDKPLIQYVVNECIAAGI 54
Query: 56 NKVYILTQYNSASLNRHL 73
++ ++T + S+ H
Sbjct: 55 TEIVLVTHSSKNSIENHF 72
|
Length = 302 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 442 | |||
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 100.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 100.0 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 100.0 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 100.0 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 100.0 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 100.0 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 100.0 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 100.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 100.0 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 100.0 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 100.0 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 100.0 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 100.0 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 100.0 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 100.0 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 100.0 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 100.0 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 100.0 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 100.0 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 100.0 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 99.98 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 99.97 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 99.97 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.96 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.96 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.96 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.94 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.94 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.93 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.93 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.92 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.91 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 99.9 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.9 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.87 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 99.86 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 99.85 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 99.81 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 99.79 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.78 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.71 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.71 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.68 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.67 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.65 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.64 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.64 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.63 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 99.62 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.62 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.6 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 99.6 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.59 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.59 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.59 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.58 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.58 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.56 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.56 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.55 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 99.53 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 99.49 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.49 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.49 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.48 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.41 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.41 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 99.39 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.38 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.36 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 99.35 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 99.35 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 99.34 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.34 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 99.33 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 99.33 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.33 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.33 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.33 | |
| PLN02296 | 269 | carbonate dehydratase | 99.32 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 99.32 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.31 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.31 | |
| PLN02472 | 246 | uncharacterized protein | 99.31 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.3 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 99.3 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 99.3 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 99.3 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 99.29 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 99.29 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.28 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.28 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.28 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.28 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.27 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.27 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.25 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 99.25 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 99.24 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.24 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 99.24 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.24 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.24 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.24 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.24 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.23 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 99.23 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 99.21 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 99.21 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.21 | |
| PLN02296 | 269 | carbonate dehydratase | 99.21 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.2 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.19 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 99.19 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.19 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.18 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 99.17 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 99.16 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.15 | |
| PLN02472 | 246 | uncharacterized protein | 99.14 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 99.14 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.14 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.13 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.12 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 99.11 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 99.1 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.09 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 99.09 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 99.09 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.09 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 99.07 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.06 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.06 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 99.05 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.05 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 99.05 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.04 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 99.03 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 99.02 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.02 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 99.02 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.01 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 99.01 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 99.0 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.99 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 98.99 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.99 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.98 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.98 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 98.97 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 98.95 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 98.94 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.93 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.93 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.9 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 98.9 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.9 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.88 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.84 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.84 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.84 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.84 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.84 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.82 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.8 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.8 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.8 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 98.79 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 98.79 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 98.78 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.77 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.76 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.74 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.73 | |
| PLN02739 | 355 | serine acetyltransferase | 98.71 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 98.69 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.68 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.65 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.65 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.64 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.64 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.62 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.62 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.61 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.6 | |
| PLN02357 | 360 | serine acetyltransferase | 98.6 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.6 | |
| PLN02357 | 360 | serine acetyltransferase | 98.59 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.56 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.56 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.55 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.55 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.54 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.53 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.53 | |
| PLN02739 | 355 | serine acetyltransferase | 98.5 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 98.5 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.49 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 98.49 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.48 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.48 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 98.47 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 98.46 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.46 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.44 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.42 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.37 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 98.37 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.35 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 98.35 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 98.35 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 98.3 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 98.18 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 98.17 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 98.17 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 98.15 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 98.13 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 98.07 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 98.06 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 98.02 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 97.98 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.98 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.91 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 97.88 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 97.75 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 97.67 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 97.67 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 97.61 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 97.6 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 97.59 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.55 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 97.52 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 97.49 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.39 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 97.33 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 97.23 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 97.18 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 97.05 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 96.37 | |
| KOG2638 | 498 | consensus UDP-glucose pyrophosphorylase [Carbohydr | 95.87 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 95.0 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 94.74 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 93.9 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 88.81 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 88.56 | |
| cd06434 | 235 | GT2_HAS Hyaluronan synthases catalyze polymerizati | 86.51 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 85.64 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 84.27 | |
| cd06442 | 224 | DPM1_like DPM1_like represents putative enzymes si | 82.5 | |
| PLN02726 | 243 | dolichyl-phosphate beta-D-mannosyltransferase | 82.07 | |
| cd06423 | 180 | CESA_like CESA_like is the cellulose synthase supe | 81.13 | |
| cd06439 | 251 | CESA_like_1 CESA_like_1 is a member of the cellulo | 80.66 | |
| KOG2388 | 477 | consensus UDP-N-acetylglucosamine pyrophosphorylas | 80.63 |
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=487.00 Aligned_cols=435 Identities=75% Similarity=1.239 Sum_probs=360.3
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|++|+|||||||.|+||+|||..+||||+||+|++|||+|+|++|.++|+++++|++++..+++.+|+...|.++.+.++
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 57899999999999999999999999999999977999999999999999999999999999999999865544333333
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEee
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
....+.+.+..|.. .+..+++|++++++.++.++++......++|++++||++++.++.+++++|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 32335555544431 1123468999999998877753110013799999999999999999999999999999999988
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCc
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (442)
.+..++..||.+..|++++|..+.|||..+....+++++++|..++......++++++|+|+|++++|..+++..++...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 77555789999999888999999999976655566777777765554333345789999999999999777776544444
Q ss_pred ccccchhhhcccc-cceEEEEecceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCccCCCceecCCceeeeEE
Q 013483 246 DFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSII 324 (442)
Q Consensus 246 ~~~~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~i 324 (442)
++..++++.++.+ .++++|.++|+|.|+++|++|++||+.++...+...++++.++++......+|+.+.++.+.+++|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 6778899999876 689999999999999999999999999998765556667777888877777889988888889999
Q ss_pred cCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeE
Q 013483 325 SHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVI 404 (442)
Q Consensus 325 ~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~ 404 (442)
+++|+|+++.|++|+||++|.|+++|.|.+++++|.+++........+...+..++.||++|.|.+++|+++|.||++++
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 99999997778999999999999999999999999765544433333333443346899999999999999999999999
Q ss_pred EccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCccC
Q 013483 405 IANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 442 (442)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~i 442 (442)
+.+..++.++.++|++++|++|.++||+++.|++||+|
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 399 IINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred EecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 99999999999999999999998789999999999986
|
|
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=455.86 Aligned_cols=386 Identities=42% Similarity=0.729 Sum_probs=340.5
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
++++-|+|||||+|+||.|||+.++||-+|++|+|.||+++|++|.++|+++|.|++.|+..++.+|+...+.|..+ .
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~--~ 80 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLD--R 80 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccc--c
Confidence 46788999999999999999999999999999999999999999999999999999999999999999887765322 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEee
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
..+.+.+++..+. +.++.|+.||++|+.+.+..+.. ...+.+++++||++++.|+.+++++|.+.++++|+++.+
T Consensus 81 ~~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~ 155 (393)
T COG0448 81 KNGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKE 155 (393)
T ss_pred ccCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEE
Confidence 1244778876665 34556899999999999988875 346899999999999999999999999999999999999
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC---
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP--- 242 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~--- 242 (442)
++..++++||++..|++++|+.|.|||..... ...++++|+|+|++++|.++|++...
T Consensus 156 Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~ 216 (393)
T COG0448 156 VPREEASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPN 216 (393)
T ss_pred CChHhhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccC
Confidence 99988999999999999999999999987211 12378999999999999999987543
Q ss_pred CCcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCccCCCcee-cCCceee
Q 013483 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVD 321 (442)
Q Consensus 243 ~~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~i~~ 321 (442)
...+|+++++|.+++.+.+++|+++|||.||+|.++|++||+++++..+.+.+++++|++++..+..||+.+ +++.+.+
T Consensus 217 ~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~n 296 (393)
T COG0448 217 SSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSN 296 (393)
T ss_pred ccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEee
Confidence 257889999999999989999999999999999999999999999966678899999999999999999999 7778899
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECC
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 401 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~ 401 (442)
+.|++||+|.+ .|.+|+++.+++|+.+|+|.+|++|++ |.||++|.|.+|||++||.|++
T Consensus 297 SLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~ 356 (393)
T COG0448 297 SLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGE 356 (393)
T ss_pred eeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCC
Confidence 99999999997 999999999999999999999999998 9999999999999999999999
Q ss_pred CeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCcc
Q 013483 402 NVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 441 (442)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~ 441 (442)
|+++++.. ++...-. .... .+.+||++++.++.+..
T Consensus 357 g~~i~~~~--~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 357 GVVIGGDK--PEEDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred CcEEcCCc--chhcccc-cccc-CCcEEEecccEeccccc
Confidence 99999864 2222222 4444 77788999998877643
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=464.88 Aligned_cols=428 Identities=60% Similarity=1.031 Sum_probs=354.0
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|++++|||||||.||||+|||..+||+|+|++|+||||+|+|++|.++|+++++|++++..+++.+|+...+.+. .+
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~---~~ 77 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD---GF 77 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc---cc
Confidence 458999999999999999999999999999999988999999999999999999999999999999997543211 11
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEee
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
....+.+.+..|.. .+..+++||++||++++.++... ..++|+|++||++++.++.++++.|+++++++|+++.+
T Consensus 78 ~~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~~---~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 152 (429)
T PRK02862 78 SGGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQEW---DVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLP 152 (429)
T ss_pred CCCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEe
Confidence 11123444433321 11122479999999999988631 13689999999999999999999999999999999877
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCc
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (442)
.+..++..||.+..|+++++..|.|||.....+.+.++.++|...+.+.....+++++|+|+|++++|.+++++. +...
T Consensus 153 ~~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~ 231 (429)
T PRK02862 153 VDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYT 231 (429)
T ss_pred cChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChh
Confidence 665557789999998889999999999865556666777777666665555567899999999999997777653 2334
Q ss_pred ccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhh-cCCCCccccCCCCcccccCccCCCceecCCceeeeEE
Q 013483 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT-AHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSII 324 (442)
Q Consensus 246 ~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~i 324 (442)
++.+++++.+++++++++|.++++|.|+|||++|++||+.++ ...+...++.+.++++..+.+.+|+.+.++.+.++.|
T Consensus 232 ~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~i 311 (429)
T PRK02862 232 DFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESII 311 (429)
T ss_pred hhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEE
Confidence 566799999998899999999999999999999999999998 4445555677788888888999998888888889999
Q ss_pred cCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeE
Q 013483 325 SHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVI 404 (442)
Q Consensus 325 ~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~ 404 (442)
+++|.|.++.|.+|+||++|+|++++.|.+|+++|+.++-.+.+...+...+..++.||++|.|.+|+|+++|.||+++.
T Consensus 312 g~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~ 391 (429)
T PRK02862 312 AEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVR 391 (429)
T ss_pred CCCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcE
Confidence 99999976788999999999999999999999999755444444444455555559999999999999999999999999
Q ss_pred EccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCccC
Q 013483 405 IANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 442 (442)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~i 442 (442)
+.+...+.+......++.|+.|.++|++++++++|+.|
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 392 IVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred EecCCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 99988888877777899999998889999999999875
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-55 Score=400.59 Aligned_cols=360 Identities=43% Similarity=0.664 Sum_probs=295.2
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
+.|+||||.||.||||+|||.++|||++|++|+ |||+|++++|.++|+++|++.++|+++++..++.+.| +.+++
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y----~~~lg 82 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY----GKELG 82 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh----hhccc
Confidence 789999999999999999999999999999999 9999999999999999999999999998999988776 23444
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
|+++...|.+ ..|..|++++.+..++..+ +.+|+|+++|++++.++++++++|+++++++|+++.++
T Consensus 83 ---Vei~~s~ete----plgtaGpl~laR~~L~~~~------~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~v 149 (371)
T KOG1322|consen 83 ---VEILASTETE----PLGTAGPLALARDFLWVFE------DAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKV 149 (371)
T ss_pred ---eEEEEEeccC----CCcccchHHHHHHHhhhcC------CCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEec
Confidence 7888766664 2234455555555544433 24899999999999999999999999999999999999
Q ss_pred CCCcCCcccEEEEcC-CCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCc
Q 013483 167 DDSRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~-~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (442)
+. ++.||++..|+ +|+|.+|.|||.... ++-.++|+|+|++++|.+++ +++.
T Consensus 150 de--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~--~~pt-- 202 (371)
T KOG1322|consen 150 DE--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRIL--LRPT-- 202 (371)
T ss_pred cC--ccccceEEEecCCCceeEehhCchhhh---------------------hccccceEEEECHHHHhHhh--hccc--
Confidence 87 89999999998 899999999998443 24457999999999998776 3343
Q ss_pred ccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCccCCCceecCCceee--eE
Q 013483 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVD--SI 323 (442)
Q Consensus 246 ~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~--~~ 323 (442)
+++.+++|.+++++++++|.++|||.||++|+||+.+-..+++..+. ++..+..+|+.+.++++.+ +.
T Consensus 203 SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~----------~t~~r~~p~~~i~~nvlvd~~~~ 272 (371)
T KOG1322|consen 203 SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPK----------YTSPRLLPGSKIVGNVLVDSIAS 272 (371)
T ss_pred chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcc----------cCCccccCCccccccEeeccccc
Confidence 48889999999999999999999999999999999998887765532 4455667777776766665 45
Q ss_pred EcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCe
Q 013483 324 ISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNV 403 (442)
Q Consensus 324 i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~ 403 (442)
+|++|.|++ +++||.+|+|+.|+.|.+|+++|+..|.+.+..+.+.-+.. +.||.+ ++|..+|+||.+|
T Consensus 273 iG~~C~Ig~----~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~--~~IG~~-----~~id~~a~lG~nV 341 (371)
T KOG1322|consen 273 IGENCSIGP----NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWN--VPIGIW-----ARIDKNAVLGKNV 341 (371)
T ss_pred cCCccEECC----CceECCCcEecCceEEEeeEEEccceechhHHHHhhhcccc--ccccCc-----eEEecccEeccce
Confidence 677777775 79999999999999999999999988888887777666665 345444 4777788888888
Q ss_pred EEccCCCcccceeeCCCeEEccCcEEEcCCcEE
Q 013483 404 IIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 436 (442)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v 436 (442)
++.|..++.+. ++..+.++.++|.+.++|
T Consensus 342 ~V~d~~~vn~g----~~l~~ks~~~~v~~~~iI 370 (371)
T KOG1322|consen 342 IVADEDYVNEG----SGLPIKSGITVVLKPAII 370 (371)
T ss_pred EEecccccccc----eeEEeccceeeccccccc
Confidence 88876666554 567777887777666655
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-53 Score=422.26 Aligned_cols=372 Identities=40% Similarity=0.648 Sum_probs=303.5
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|++|+|||||||+||||+|||..+||||+||+|++|||+|+|++|.++|+++++|+++++.+++.+|+.+...|+....
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~- 79 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRI- 79 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCC-
Confidence 5789999999999999999999999999999999779999999999999999999999999999999864322221110
Q ss_pred CCceEEEec--ccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLA--ATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~--~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
...+.+++ ..+. .++|++||++||+.+++++... ..++|+|++||++++.++.++++.|+++++++|+++
T Consensus 80 -~~~~~i~~~~~~~~----~~~~~~Gta~al~~a~~~l~~~---~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~ 151 (380)
T PRK05293 80 -NGGVTILPPYSESE----GGKWYKGTAHAIYQNIDYIDQY---DPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAV 151 (380)
T ss_pred -CCCEEEeCCcccCC----CCcccCCcHHHHHHHHHHHHhC---CCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEE
Confidence 01134442 2221 1234589999999999998631 126899999999999999999999998888889888
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC-
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP- 242 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~- 242 (442)
...+..++..||.+..|++++|.++.|||..+. +++.++|+|+|++++|..++++...
T Consensus 152 ~~~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~ 210 (380)
T PRK05293 152 IEVPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKN 210 (380)
T ss_pred EEcchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhc
Confidence 766544578899999988899999999986432 3578999999999988777665322
Q ss_pred --CCcccccchhhhcccc-cceEEEEecceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCccCCCcee-cCCc
Q 013483 243 --TANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSK 318 (442)
Q Consensus 243 --~~~~~~~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~ 318 (442)
...++..++++.++++ .++++|.++++|.|++++++|++||+.++...+...++++.+.+...+.+.+|+.+ +++.
T Consensus 211 ~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 290 (380)
T PRK05293 211 PNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAK 290 (380)
T ss_pred CCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCE
Confidence 1234557899998874 68999999999999999999999999999877666777788888888888899999 7888
Q ss_pred eeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcE
Q 013483 319 IVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 398 (442)
Q Consensus 319 i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ 398 (442)
|.++.|+++|.|+ +.+.+|+||++|.|+++|.|.+++++.+ +.||++|.|.+|+|+++|+
T Consensus 291 i~~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~ 350 (380)
T PRK05293 291 VKNSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAV 350 (380)
T ss_pred EecCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCE
Confidence 8899999999997 4678999999999999999999998877 9999999999999999999
Q ss_pred ECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCccC
Q 013483 399 IGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 442 (442)
Q Consensus 399 ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~i 442 (442)
|++++.+.+... +..+||++++|+++++|
T Consensus 351 i~~~~~i~~~~~---------------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 351 IGDGVIIGGGKE---------------VITVIGENEVIGVGTVI 379 (380)
T ss_pred ECCCCEEcCCCc---------------eeEEEeCCCCCCCCcEe
Confidence 999999976321 02345666666666554
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-53 Score=420.79 Aligned_cols=385 Identities=36% Similarity=0.660 Sum_probs=303.0
Q ss_pred cccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcc
Q 013483 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 5 ~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 84 (442)
.|++|+|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|++++..+++.+|+...|.+. +.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~-~~- 79 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLS-GL- 79 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcc-cc-
Confidence 5788999999999999999999999999999999878999999999999999999999999999999997543211 11
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEe
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~ 164 (442)
....+...+..+. .+..+++||++||+.+++++.+. ..++|+|++||++++.++.+++++|+++++++|+++.
T Consensus 80 -~~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~~---~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~ 152 (407)
T PRK00844 80 -LGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIEDE---DPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAI 152 (407)
T ss_pred -CCCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHhc---CCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEE
Confidence 1111221111111 12234689999999999998631 1246999999999999999999999999999999887
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC--
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP-- 242 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~-- 242 (442)
..+..++..||.+..|++++|..|.|||..+.... ....++++++|+|+|++++|.+++++...
T Consensus 153 ~~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~~--------------~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 218 (407)
T PRK00844 153 RVPREEASAFGVIEVDPDGRIRGFLEKPADPPGLP--------------DDPDEALASMGNYVFTTDALVDALRRDAADE 218 (407)
T ss_pred ecchHHcccCCEEEECCCCCEEEEEECCCCccccc--------------CCCCCcEEEeEEEEEeHHHHHHHHHHhhcCC
Confidence 66544578899999998899999999987532100 00124688999999999998666664221
Q ss_pred -CCcccccchhhhcccccceEEEEe------------cceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCccC
Q 013483 243 -TANDFGSEIIPASANEQFLKAYLF------------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNL 309 (442)
Q Consensus 243 -~~~~~~~~~l~~~i~~~~i~~~~~------------~g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (442)
...++..|+++.++++..+++|.+ +|+|.|+++|++|++||+.+++......++.+++++.+.....
T Consensus 219 ~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~ 298 (407)
T PRK00844 219 DSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNL 298 (407)
T ss_pred cccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCC
Confidence 224556789999999888999976 5999999999999999999998765555666667777766666
Q ss_pred CCcee-cCC----ceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCC
Q 013483 310 PPSKI-DDS----KIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGE 384 (442)
Q Consensus 310 ~~~~i-~~~----~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 384 (442)
+|+.+ .++ .+.++.|+++|.|+++.|.+|+||++|.|+++|.|++++++.+ +.||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~ 359 (407)
T PRK00844 299 PPAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGR 359 (407)
T ss_pred CCceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECC
Confidence 77766 332 4568999999999877888999999999999999999988776 99999
Q ss_pred CcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEE-ccCcEEEcCCcEE
Q 013483 385 NTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYI-RSGVTVILKNSVI 436 (442)
Q Consensus 385 ~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i-~~~~~vi~~~~~v 436 (442)
+|.|.+|+|+++|+|++++++++.. +.. +.+.+| ..|.++|++|+.|
T Consensus 360 ~~~i~~~ii~~~~~i~~~~~i~~~~---~~~--~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 360 GAVVRRAILDKNVVVPPGATIGVDL---EED--RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred CCEEEeeEECCCCEECCCCEECCCc---ccc--ccceEeccceEEEeCCCCCC
Confidence 9999999999999999999998731 111 234555 4666778877754
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-52 Score=415.08 Aligned_cols=388 Identities=35% Similarity=0.652 Sum_probs=305.7
Q ss_pred ccccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCc
Q 013483 4 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (442)
Q Consensus 4 ~~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~ 83 (442)
+.+++++|||||||.||||+|||..+||||+|++|++|||+|+|++|.++|+++|+|++++..+++.+|+.+.|.+. ..
T Consensus 11 ~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~-~~ 89 (425)
T PRK00725 11 QLTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFF-RE 89 (425)
T ss_pred hhhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhccc-cc
Confidence 45688999999999999999999999999999999934999999999999999999999999999999997543210 11
Q ss_pred ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEE
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
+. ...+.+++..+.. ..+.+++||++|+++++.++... .+++|+|++||++++.++.++++.|+++++++|+++
T Consensus 90 ~~-~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~~---~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~ 163 (425)
T PRK00725 90 EL-GEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRRY---DPKYVVILAGDHIYKMDYSRMLADHVESGADCTVAC 163 (425)
T ss_pred CC-CCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEE
Confidence 11 1224444433321 11234689999999999998631 136899999999999999999999999999999998
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC-
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP- 242 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~- 242 (442)
.+.+..++..||.+..|++++|++|.|||..+.. + + ....++++++|+|+|++++|.+++++...
T Consensus 164 ~~~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~----------~--~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~ 229 (425)
T PRK00725 164 LEVPREEASAFGVMAVDENDRITAFVEKPANPPA--M----------P--GDPDKSLASMGIYVFNADYLYELLEEDAED 229 (425)
T ss_pred EecchhhcccceEEEECCCCCEEEEEECCCCccc--c----------c--cCccceEEEeeEEEEeHHHHHHHHHHhhcC
Confidence 7765555789999999888999999999864321 0 0 00124688999999999988666654321
Q ss_pred --CCcccccchhhhcccccceEEEEec-----------ceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCccC
Q 013483 243 --TANDFGSEIIPASANEQFLKAYLFN-----------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNL 309 (442)
Q Consensus 243 --~~~~~~~~~l~~~i~~~~i~~~~~~-----------g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (442)
...++..|+++.++++.++++|.++ ++|.|+++|++|++||+.++...+...+++...++++.....
T Consensus 230 ~~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~ 309 (425)
T PRK00725 230 PNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQL 309 (425)
T ss_pred CCccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCC
Confidence 2345667999999998899999885 599999999999999999987665555666666777666677
Q ss_pred CCcee-c---C--CceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeC
Q 013483 310 PPSKI-D---D--SKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 383 (442)
Q Consensus 310 ~~~~i-~---~--~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 383 (442)
+|+.+ . + +.+.+++|+++|+|.++.|++|+||++|.|+++|.|.+|+++++ +.||
T Consensus 310 ~~~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~ 370 (425)
T PRK00725 310 PPAKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVG 370 (425)
T ss_pred CCCeEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEEC
Confidence 77765 1 2 34668999999999877888999999999999999999999887 9999
Q ss_pred CCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEE-ccCcEEEcCCcEE
Q 013483 384 ENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYI-RSGVTVILKNSVI 436 (442)
Q Consensus 384 ~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i-~~~~~vi~~~~~v 436 (442)
++|.|.+|+|+++|+|+++++++......+ ++.+| ..|.++|++++.+
T Consensus 371 ~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~-----~~~~~~~~~~~~i~~~~~~ 419 (425)
T PRK00725 371 RSCRLRRCVIDRGCVIPEGMVIGEDPEEDA-----KRFRRSEEGIVLVTREMLD 419 (425)
T ss_pred CCCEEeeEEECCCCEECCCCEECCCCCCCC-----ceeEecCccEEEECCCccc
Confidence 999999999999999999999975433222 12333 5566777777654
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=399.74 Aligned_cols=351 Identities=30% Similarity=0.476 Sum_probs=277.2
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (442)
.|+|||||||+||||+|||.++||||+||+|+ |||+|+|++|.++|+++++++++|..+.+.+++.+.+.++
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~------- 72 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLG------- 72 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccC-------
Confidence 48999999999999999999999999999999 9999999999999999999999999999999997643222
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecC
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~ 167 (442)
+.+.+..+.. ++||+++|+.+.+++.. ++|++++||.+++.++.+++++|+++.+..|+...+..
T Consensus 73 --~~I~y~~e~~-------~lGTag~l~~a~~~l~~------~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~ 137 (358)
T COG1208 73 --VRITYVVEKE-------PLGTAGALKNALDLLGG------DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL 137 (358)
T ss_pred --CceEEEecCC-------cCccHHHHHHHHHhcCC------CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC
Confidence 2222222322 47999999999999973 79999999999999999999999999888888888877
Q ss_pred CCcCCcccEEEEcCC-CceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCcc
Q 013483 168 DSRASDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (442)
Q Consensus 168 ~~~~~~~g~v~~d~~-~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~ 246 (442)
. +..||.+..+++ +++.+|.|||..... .+++.++|+|+|++++|. .++. ....+
T Consensus 138 ~--~~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~--~~~~~ 193 (358)
T COG1208 138 D--PSEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEK--GERFD 193 (358)
T ss_pred C--CCcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hccc--CCccc
Confidence 6 378999988744 599999999953111 247899999999999996 3332 23456
Q ss_pred cccchhhhcccccc-eEEEEecceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCc-cCCCceecCCceeeeEE
Q 013483 247 FGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRR-NLPPSKIDDSKIVDSII 324 (442)
Q Consensus 247 ~~~~~l~~~i~~~~-i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~i~~~~i 324 (442)
|..++++.+++... +++|.++|+|.|+++|++|++|++.+++..... +.......+. +.. +.+.+ +.+|
T Consensus 194 ~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~-~~i~g----p~~i 264 (358)
T COG1208 194 FEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKS----PLGPIEEPVVIIRS-AYIIG----PVVI 264 (358)
T ss_pred chhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccc----cccccccccccccc-ceEeC----CEEE
Confidence 66689999999876 999999999999999999999999998644221 0001100000 111 22222 5666
Q ss_pred cCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCC
Q 013483 325 SHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKN 402 (442)
Q Consensus 325 ~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~ 402 (442)
+.+|.|+ .+.| .+++||++|.|+.++.|.+|+++.+ +.|+++++|.+|+||+||.||++
T Consensus 265 g~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~~ 325 (358)
T COG1208 265 GPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGAS 325 (358)
T ss_pred CCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECCc
Confidence 6666666 4555 4799999999999999999999998 99999999999999999999992
Q ss_pred eEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCcc
Q 013483 403 VIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 441 (442)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~ 441 (442)
. . +.+ ..+++++.+..| +++++++.++.+++
T Consensus 326 ~-~-----i~d-~~~g~~~~i~~g-~~~~~~~~~~~~~~ 356 (358)
T COG1208 326 L-I-----IGD-VVIGINSEILPG-VVVGPGSVVESGEI 356 (358)
T ss_pred e-e-----ecc-eEecCceEEcCc-eEeCCCccccCccc
Confidence 2 2 555 666666677666 44577777777764
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-50 Score=377.04 Aligned_cols=382 Identities=23% Similarity=0.286 Sum_probs=297.9
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
+++.+||||||+||||+ .++||-|.|++|+ ||++|+++.+...+.+++++|+++..+++++.+.+.. .
T Consensus 1 ~~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~----~---- 68 (460)
T COG1207 1 MSLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD----D---- 68 (460)
T ss_pred CCceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc----C----
Confidence 36789999999999999 8899999999999 9999999999999999999999999999998885421 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~ 164 (442)
++++ .|.+ ++||++|+++++.++.+ ..+.++||++||+ |+..+ |+++++.|...++.+++++.
T Consensus 69 ---v~~v--~Q~e-------qlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~ 133 (460)
T COG1207 69 ---VEFV--LQEE-------QLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTA 133 (460)
T ss_pred ---ceEE--Eecc-------cCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEE
Confidence 2222 2332 47999999999999943 1245799999999 66554 88899999999999999999
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~ 244 (442)
..++ |..||-+..+++|.|.++.|..+....++ .-..+++|+|+|+.+.|.++|.+.. ..
T Consensus 134 ~~~d--P~GYGRIvr~~~g~V~~IVE~KDA~~eek-----------------~I~eiNtGiy~f~~~~L~~~L~~l~-nn 193 (460)
T COG1207 134 ELDD--PTGYGRIVRDGNGEVTAIVEEKDASEEEK-----------------QIKEINTGIYAFDGAALLRALPKLS-NN 193 (460)
T ss_pred EcCC--CCCcceEEEcCCCcEEEEEEcCCCCHHHh-----------------cCcEEeeeEEEEcHHHHHHHHHHhc-cc
Confidence 9877 88999999998999999999777654311 1246799999999998888888753 34
Q ss_pred cccccchhhhccc-----ccceEEEEecce--eeecCChHHHHHHhhhhhcCC------CCccccCCC-------Ccccc
Q 013483 245 NDFGSEIIPASAN-----EQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDAT-------KPIYT 304 (442)
Q Consensus 245 ~~~~~~~l~~~i~-----~~~i~~~~~~g~--~~di~t~~~~~~an~~~l~~~------~~~~~~~~~-------~~~~~ 304 (442)
+..++.+|.+++. +.++.++..+++ ...+|+-.+|.++.+.|..+. .+.++.+|+ ..+..
T Consensus 194 NaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~ 273 (460)
T COG1207 194 NAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGR 273 (460)
T ss_pred cccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECC
Confidence 5555666666664 468888888754 578899999999988776542 233344443 44444
Q ss_pred cCccCC------------Ccee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEec------eEEECCcccc
Q 013483 305 SRRNLP------------PSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD------TMMLGADFYE 364 (442)
Q Consensus 305 ~~~~~~------------~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~------~~~~~~~~~~ 364 (442)
++.|+| .+.| +++.|.|+.|++++.|. .+.+++|.||++|.|||+++|++ .+.+|++ ++
T Consensus 274 DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNF-VE 352 (460)
T COG1207 274 DVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNF-VE 352 (460)
T ss_pred ceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeee-EE
Confidence 555555 4444 45667778888888888 46777777777777777666655 5555643 32
Q ss_pred chhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccce-eeCCCeEEccCcEE-----EcCCcEEcC
Q 013483 365 TDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEAD-RSAEGFYIRSGVTV-----ILKNSVITD 438 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~-~~~~~~~i~~~~~v-----i~~~~~v~~ 438 (442)
..++..+++ +.++|-++|+|+.||.+|.||+|+++.|+++..++. +||+++|||+++.+ ||+++.|++
T Consensus 353 ---vK~a~ig~g---sKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaA 426 (460)
T COG1207 353 ---VKKATIGKG---SKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAA 426 (460)
T ss_pred ---EecccccCC---ccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcc
Confidence 123344445 688899999999999999999999999999999988 69999999999886 999999999
Q ss_pred CccC
Q 013483 439 GFVI 442 (442)
Q Consensus 439 ~~~i 442 (442)
||+|
T Consensus 427 GStI 430 (460)
T COG1207 427 GSTI 430 (460)
T ss_pred cceE
Confidence 9986
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=385.39 Aligned_cols=351 Identities=25% Similarity=0.440 Sum_probs=271.8
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChh-hHHHHHHhhccCCCCccc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~~ 85 (442)
.+|+|||||+|+|+||+|||.++||||+||+|++|||+|+|++|.++|+++|+|++++..+ ++.+|+.+...|+.....
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~ 80 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR 80 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence 3799999999999999999999999999999987899999999999999999999999887 999999653222211110
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEee
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
. ...... .+.+.. ...|++++++.+++++.. ...++|+|++||++++.++.+++++|+++++++|+++.+
T Consensus 81 ~-~~~~~~--~~e~~~----l~tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 150 (369)
T TIGR02092 81 D-GLFVFP--YNDRDD----LSEGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKK 150 (369)
T ss_pred C-cEEEEe--ccCCCC----cccChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEe
Confidence 0 011111 122111 113677788888888842 013689999999999999999999999999999999988
Q ss_pred cCCCcCCccc-EEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-
Q 013483 166 MDDSRASDFG-LMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (442)
Q Consensus 166 ~~~~~~~~~g-~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~- 243 (442)
.+..++..|| .+..++++++..+.+++.... ....++|+|+|++++|.++++...+.
T Consensus 151 v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~ 209 (369)
T TIGR02092 151 VKPADASEYDTILRFDESGKVKSIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYECIQRG 209 (369)
T ss_pred cCHHHccccCcEEEEcCCCCEEeccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHHHhhcC
Confidence 7643456775 455666678877643332211 13468999999999876676654332
Q ss_pred CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCCCCcccc-CCCCcccccCccCCCcee-cCCceee
Q 013483 244 ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFY-DATKPIYTSRRNLPPSKI-DDSKIVD 321 (442)
Q Consensus 244 ~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~i-~~~~i~~ 321 (442)
...+..++++.++++..+++|..+++|.|++||++|++||+.+++.......+ .....++....+.+|+.+ +++.|.+
T Consensus 210 ~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~ 289 (369)
T TIGR02092 210 KLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVEN 289 (369)
T ss_pred ccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEE
Confidence 22334578888888888999999999999999999999999998775332222 222344444456688888 7888889
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECC
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 401 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~ 401 (442)
+.||++|.|+ +.+.+|+|+++|.|+++|.|.+++++.+ +.|++++.+.+|+||++++|++
T Consensus 290 ~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~ 349 (369)
T TIGR02092 290 SLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEP 349 (369)
T ss_pred eEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECC
Confidence 9999999998 5688999999999999999999999887 8999999999999999999999
Q ss_pred CeEEccC
Q 013483 402 NVIIANS 408 (442)
Q Consensus 402 ~~~~~~~ 408 (442)
++.+.+.
T Consensus 350 ~~~~~~~ 356 (369)
T TIGR02092 350 NVKIAGT 356 (369)
T ss_pred CCEeCCC
Confidence 9999764
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-48 Score=381.16 Aligned_cols=356 Identities=49% Similarity=0.858 Sum_probs=276.9
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
|||||||.||||+|+|.++||||+|++|++|||+|++++|.++|+++|+|++++..+++.+++.+.+.+. .. . ...+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~-~~-~-~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFD-GF-I-DGFV 77 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCcc-Cc-c-CCCE
Confidence 6999999999999999999999999999866999999999999999999999999999999997543211 00 0 1124
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCCCc
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~ 170 (442)
++.+..+. ...+.+++|++++++.++.++... ..++|++++||++++.++.++++.|+++++++++++.+.+...
T Consensus 78 ~~~~~~~~--~~~~~~~~Gt~~al~~a~~~~~~~---~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~ 152 (361)
T TIGR02091 78 TLLPAQQR--ESGTDWYQGTADAVYQNLDLIEDY---DPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKE 152 (361)
T ss_pred EEeCCccc--CCCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHh
Confidence 44332221 112234579999999999888531 1368999999999999999999999988888888887766555
Q ss_pred CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC---CCccc
Q 013483 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDF 247 (442)
Q Consensus 171 ~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~---~~~~~ 247 (442)
+..||++..|+++++..+.|||..+..... . ...+++++|+|+|++++|.++++.... ...++
T Consensus 153 ~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~------------~--~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 218 (361)
T TIGR02091 153 ASRFGVMQVDEDGRIVDFEEKPANPPSIPG------------M--PDFALASMGIYIFDKDVLKELLEEDADDPESSHDF 218 (361)
T ss_pred cccccEEEECCCCCEEEEEECCCCcccccc------------c--ccccEEeeeEEEEcHHHHHHHHHHHhhcCCccccc
Confidence 778999999888899999999854331000 0 012478999999999998666665321 12345
Q ss_pred ccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCCCCccccCCCCccccc-CccCCCcee-cCCceeeeEEc
Q 013483 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTS-RRNLPPSKI-DDSKIVDSIIS 325 (442)
Q Consensus 248 ~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~i-~~~~i~~~~i~ 325 (442)
..++++.+++++++++|.++++|.|++|+++|++|++.++++.+.......++.+.+. ..+.+++++ +++.+.++.||
T Consensus 219 ~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig 298 (361)
T TIGR02091 219 GKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVS 298 (361)
T ss_pred HHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEEC
Confidence 5789999999889999999999999999999999999999876433333334444332 345566666 44566788999
Q ss_pred CCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEE
Q 013483 326 HGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVII 405 (442)
Q Consensus 326 ~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~ 405 (442)
++|+|+.+.+.+|+||++|.|+++|.|.+++++++ +.||++|.|.+|+||++++|++++++
T Consensus 299 ~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i 359 (361)
T TIGR02091 299 EGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVI 359 (361)
T ss_pred CCCEECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEe
Confidence 99999855788999999999999999998888776 89999999999999999999999988
Q ss_pred cc
Q 013483 406 AN 407 (442)
Q Consensus 406 ~~ 407 (442)
+|
T Consensus 360 ~~ 361 (361)
T TIGR02091 360 GN 361 (361)
T ss_pred CC
Confidence 65
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-45 Score=357.78 Aligned_cols=234 Identities=23% Similarity=0.376 Sum_probs=190.5
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEecc-ChhhHHHHHHhhccCCCCcccCCc
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY-NSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~-~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
+|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|++++++++++ ..+++.+++.+.. .|+..
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~~------~~~~~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGE------RFGAK 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhccc------ccCce
Confidence 589999999999999999999999999999 999999999999999999999999 7788888885422 22211
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCC
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~ 168 (442)
+..+ .+. ++.|++++++.++.++.+ ++|++++||++++.++.++++.|+++++++|+++.+.++
T Consensus 74 -~~~~--~~~-------~~~G~~~al~~a~~~l~~------~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~ 137 (353)
T TIGR01208 74 -ITYI--VQG-------EPLGLAHAVYTARDFLGD------DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD 137 (353)
T ss_pred -EEEE--ECC-------CCCCHHHHHHHHHHhcCC------CCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC
Confidence 2222 222 136999999999998863 689999999999999999999999999999998887654
Q ss_pred CcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC--Ccc
Q 013483 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--AND 246 (442)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~--~~~ 246 (442)
+..|+.+..+++++|.++.|||..+. +.+.++|+|+|++.++. .+++..+. ...
T Consensus 138 --~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~ 193 (353)
T TIGR01208 138 --PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGEL 193 (353)
T ss_pred --hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcE
Confidence 56799888876678999999987542 35689999999997764 55543332 122
Q ss_pred cccchhhhcccc-cceEEEEecceeeecCChHHHHHHhhhhhcCC
Q 013483 247 FGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (442)
Q Consensus 247 ~~~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~ 290 (442)
...++++.+++. .++++|.++++|.|++||++|++||+.++++.
T Consensus 194 ~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~ 238 (353)
T TIGR01208 194 EITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEV 238 (353)
T ss_pred EHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhc
Confidence 236788888865 57999999999999999999999999998753
|
Alternate name: dTDP-D-glucose synthase |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=365.91 Aligned_cols=389 Identities=21% Similarity=0.281 Sum_probs=278.0
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|++++|||||||.|+||+ ..+||+|+|++|+ |||+|+|++|.++|++++++++++..+++.+++.+.. .
T Consensus 1 m~~~~avIlAaG~g~Rl~---~~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~----~--- 69 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMK---SDLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDG----D--- 69 (459)
T ss_pred CCcceEEEEcCCCCcccC---CCCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCC----c---
Confidence 457999999999999998 3689999999999 9999999999999999999999998888888874311 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-e-eecCHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-L-YRMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i-~~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
+.+.. +.. ++|++++++.+++++++. .++|++++||. + ...++.++++.|+..+++++++.
T Consensus 70 ----i~~~~--~~~-------~~Gt~~al~~a~~~l~~~----~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~ 132 (459)
T PRK14355 70 ----VSFAL--QEE-------QLGTGHAVACAAPALDGF----SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLT 132 (459)
T ss_pred ----eEEEe--cCC-------CCCHHHHHHHHHHHhhcc----CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEE
Confidence 22221 211 369999999999998631 36899999998 3 35668999999988888888887
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+.++ +..|+.+..|+++++..+.|||...... ..++++++|+|+|++++|.++++...+.
T Consensus 133 ~~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 193 (459)
T PRK14355 133 ARLEN--PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGND 193 (459)
T ss_pred EEcCC--CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCcc
Confidence 76654 5678988888888999999887432110 0135789999999999776666654332
Q ss_pred ---Ccccccchhhhcccc-cceEEEEecce--eeecCChHHHHHHhhhhhcCC------CCccccCCCC-cccccCccCC
Q 013483 244 ---ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDATK-PIYTSRRNLP 310 (442)
Q Consensus 244 ---~~~~~~~~l~~~i~~-~~i~~~~~~g~--~~di~t~~~~~~an~~~l~~~------~~~~~~~~~~-~~~~~~~~~~ 310 (442)
......|+++.++++ .++++|+++++ |.++++|++|++|++.++... .....+++.. .+.+.+.+++
T Consensus 194 ~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~ 273 (459)
T PRK14355 194 NAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGR 273 (459)
T ss_pred ccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcC
Confidence 223346888988876 57999999887 899999999999988665432 1222444543 3555566666
Q ss_pred Ccee-cCCcee-eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhh---hhhhcCCC-------
Q 013483 311 PSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEV---ASLLAEGR------- 377 (442)
Q Consensus 311 ~~~i-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~------- 377 (442)
++.+ +++.|. +++||++|.|+ ++.|.+|+||++|.|++++.|.++++ ++++.+.+... .+...++.
T Consensus 274 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i-~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ 352 (459)
T PRK14355 274 DTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVV-GDDVAIGPMAHLRPGTELSAHVKIGNFVE 352 (459)
T ss_pred CCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEE-CCCCEECCCCEECCCCEeCCCCEECCCcc
Confidence 6666 455553 57777777777 66667777777777777777655433 33332221100 00011110
Q ss_pred -cceEeC------CCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 378 -VPVGIG------ENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 378 -~~~~i~------~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
..+.|| +.+++++++||++|.||+++++.+..+...+ ..||++++||.++++ ||++++|++||+|
T Consensus 353 ~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v 430 (459)
T PRK14355 353 TKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV 430 (459)
T ss_pred ccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 001222 2334467899999999999999887766654 579999999999876 9999999999875
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=368.84 Aligned_cols=389 Identities=17% Similarity=0.216 Sum_probs=278.1
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
+.++.|||||||.|+||+| .+||+|+|++|+ |||+|++++|.+++++++++++++..+++.+++.... ..
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~---~~--- 71 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA---PE--- 71 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC---Cc---
Confidence 4578999999999999996 589999999999 9999999999999999999999988877777764311 11
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-ee-ecCHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
+.++. +. ++.|++++++.++.++.. ...++|++++||+ ++ ..++.++++.|++.+++++++.
T Consensus 72 ----~~~~~--~~-------~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~ 135 (482)
T PRK14352 72 ----VDIAV--QD-------EQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLT 135 (482)
T ss_pred ----cEEEe--CC-------CCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEE
Confidence 22221 21 136899999999988852 1136799999999 44 3558999999988888778777
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+..+ +..|+.+..+++++|.++.|||.....+. ...++++|+|+|++++|.++++.....
T Consensus 136 ~~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~~-----------------~~~~~~~Giy~f~~~~l~~~~~~~~~~ 196 (482)
T PRK14352 136 TTLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQR-----------------AIREVNSGVYAFDAAVLRSALARLSSD 196 (482)
T ss_pred eecCC--CCCCCEEEECCCCCEEEEEECCCCCHHHh-----------------hcceEEEEEEEEEHHHHHHHHHhhCcc
Confidence 66554 67899888888899999999988543210 124679999999999987776654332
Q ss_pred ---Ccccccchhhhcccc-cceEEEEecceeeecCChHHH------HHHhhhhhcCC--CCccccC-------CCCccc-
Q 013483 244 ---ANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSF------FEANLALTAHP--PMFSFYD-------ATKPIY- 303 (442)
Q Consensus 244 ---~~~~~~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~------~~an~~~l~~~--~~~~~~~-------~~~~~~- 303 (442)
...+..|+++.+++. .++++|.++++|.|+++++.| ..+|+.++... .+...++ +.+.+.
T Consensus 197 ~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~ 276 (482)
T PRK14352 197 NAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGR 276 (482)
T ss_pred ccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECC
Confidence 223346889988876 589999999999999999888 56666554332 1111122 222222
Q ss_pred -----------ccCccCCCcee-cCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhh--h
Q 013483 304 -----------TSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE--V 369 (442)
Q Consensus 304 -----------~~~~~~~~~~i-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~--~ 369 (442)
+.+.|++++.| .++.|.+++|+++|.|..+.+.+++||+++.|++++.|.+++++|++..+.... .
T Consensus 277 ~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~ 356 (482)
T PRK14352 277 DVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETK 356 (482)
T ss_pred CcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEc
Confidence 22333333333 244444566666666654445667777777777777776666666554333221 1
Q ss_pred hhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 370 ASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 370 ~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.+..+++ +.|++.+.+++|+||++|.||+++++.+..+..++ .+||++++||.++++ ||++++||+||+|
T Consensus 357 ~~~I~~~---~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v 432 (482)
T PRK14352 357 NATIGRG---TKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVI 432 (482)
T ss_pred ccEECCC---cEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEE
Confidence 1222333 56777778889999999999999999887665554 589999999999886 9999999999875
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=365.13 Aligned_cols=389 Identities=23% Similarity=0.302 Sum_probs=264.7
Q ss_pred CCcccccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCC
Q 013483 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG 80 (442)
Q Consensus 1 ~~~~~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~ 80 (442)
|+.+. ++|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++..
T Consensus 1 ~~~~~-~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~----- 70 (481)
T PRK14358 1 MTEQT-RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG----- 70 (481)
T ss_pred CCccc-CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc-----
Confidence 44444 589999999999999996 589999999999 99999999999999999999999988888777642
Q ss_pred CCcccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-ee-ecCHHHHHHHHHHcCCc
Q 013483 81 SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGAD 158 (442)
Q Consensus 81 ~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~~~~~~~~ 158 (442)
.+ +.++. +. ++.|++++++.+++++.. ..++|++++||+ ++ ..++.++++.|++++++
T Consensus 71 ~~-------i~~v~--~~-------~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~ 130 (481)
T PRK14358 71 SG-------VAFAR--QE-------QQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSA 130 (481)
T ss_pred CC-------cEEec--CC-------CcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCe
Confidence 11 23332 21 136999999999988852 135799999998 33 45689999999998888
Q ss_pred EEEEEeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHh
Q 013483 159 ITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (442)
Q Consensus 159 ~tl~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~ 238 (442)
+|+++.+.++ +..||.+..|++++|.+|.|||.....+ ....++++|+|+|+++++ ++++
T Consensus 131 ~ti~~~~~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~-~~~~ 190 (481)
T PRK14358 131 MTILTGELPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAP-ELAR 190 (481)
T ss_pred EEEEEEEcCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHH-HHHH
Confidence 9988877765 5679999998889999999998753210 012467999999997653 3333
Q ss_pred hhCC---CCcccccchhhhcccc-cceEEEEecceeeecCChHHHHHHhhh-hhcCC--------------CCccccCCC
Q 013483 239 WRFP---TANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLA-LTAHP--------------PMFSFYDAT 299 (442)
Q Consensus 239 ~~~~---~~~~~~~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an~~-~l~~~--------------~~~~~~~~~ 299 (442)
...+ ....+..|+++.++++ .++++|.+.++|..++.-.+|..+++. ++... +....+.+.
T Consensus 191 ~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 270 (481)
T PRK14358 191 RIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDT 270 (481)
T ss_pred hcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCC
Confidence 3221 1223346888888876 579999998888777766666554432 22110 111111111
Q ss_pred ------------CcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccc
Q 013483 300 ------------KPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYET 365 (442)
Q Consensus 300 ------------~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~ 365 (442)
..+.+.+.+++.+.| .++.|.+++|+++|.|+ ++.+.+++||+++.|++++.|...+++|+++.+.
T Consensus 271 ~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig 350 (481)
T PRK14358 271 VTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIG 350 (481)
T ss_pred cEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEEC
Confidence 222222222333333 23444455555555555 4444555555555555555555545555543333
Q ss_pred hhhh--hhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccce-eeCCCeEEccCcEE-----EcCCcEEc
Q 013483 366 DAEV--ASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEAD-RSAEGFYIRSGVTV-----ILKNSVIT 437 (442)
Q Consensus 366 ~~~~--~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~-~~~~~~~i~~~~~v-----i~~~~~v~ 437 (442)
+... .++...+ +.+|+.+.+++++||++|.||+++++.|..+..++. .||++++||+++++ ||++++|+
T Consensus 351 ~~~~i~~~~i~~~---~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~ 427 (481)
T PRK14358 351 NFVETKNARLDAG---VKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIA 427 (481)
T ss_pred CCEEECCceecCC---cccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEEC
Confidence 3211 1111112 455666666889999999999999999987776654 89999999999876 99999999
Q ss_pred CCccC
Q 013483 438 DGFVI 442 (442)
Q Consensus 438 ~~~~i 442 (442)
+||+|
T Consensus 428 ~gs~v 432 (481)
T PRK14358 428 AGSAV 432 (481)
T ss_pred CCCEE
Confidence 99864
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=354.21 Aligned_cols=375 Identities=22% Similarity=0.309 Sum_probs=283.0
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
|+++|||||||.||||+| .+||+|+|++|+ |||+|+++.|.++ +++++|++++..+++.+++.+.+ .+
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~---~~---- 68 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF---PG---- 68 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC---Cc----
Confidence 468899999999999996 799999999999 9999999999987 78999999999889988886421 11
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
+.++..... .+.|++++++.+.. . .++|++++||..+. ..+.++.+.+.++++++.+.+.
T Consensus 69 ---v~~~~~~~~-------~~~gt~~al~~~~~--~------~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~ 128 (430)
T PRK14359 69 ---VIFHTQDLE-------NYPGTGGALMGIEP--K------HERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHL 128 (430)
T ss_pred ---eEEEEecCc-------cCCCcHHHHhhccc--C------CCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEc
Confidence 333332211 13689999977421 1 37999999999432 1244555555677788887776
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~--- 243 (442)
++ +..|+.+..+ ++++..+.|++..... .. ..++.++|+|+|++++|.++++.....
T Consensus 129 ~~--~~~~g~v~~d-~g~v~~i~e~~~~~~~---------------~~--~~~~~~~Giyif~~~~l~~~~~~~~~~~~~ 188 (430)
T PRK14359 129 AD--PKGYGRVVIE-NGQVKKIVEQKDANEE---------------EL--KIKSVNAGVYLFDRKLLEEYLPLLKNQNAQ 188 (430)
T ss_pred CC--CccCcEEEEc-CCeEEEEEECCCCCcc---------------cc--cceEEEeEEEEEEHHHHHHHHHhcCccccc
Confidence 54 5578887764 6899999988754221 00 135679999999999997665543211
Q ss_pred Ccccccchhhhcccc-cceEEEEec-ceeeecCChHHHHHHhhhhhcCCC-------------CccccCCCCcccccCcc
Q 013483 244 ANDFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPP-------------MFSFYDATKPIYTSRRN 308 (442)
Q Consensus 244 ~~~~~~~~l~~~i~~-~~i~~~~~~-g~~~di~t~~~~~~an~~~l~~~~-------------~~~~~~~~~~~~~~~~~ 308 (442)
...+..|+++.+++. .++.++..+ ++|.|+++|+||.+|+..+..+.. ...+..++..+.+.+.+
T Consensus 189 ~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~i 268 (430)
T PRK14359 189 KEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECEL 268 (430)
T ss_pred CceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEE
Confidence 223346778877764 679999887 689999999999999876654321 11224455566666777
Q ss_pred CCCcee-cCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcE
Q 013483 309 LPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 387 (442)
Q Consensus 309 ~~~~~i-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 387 (442)
++++.| .++.+.++.|+++|.|+.+.+.+|+||+++.|++++.|++ +++|++.+++.+. . ++ +.||+.++
T Consensus 269 g~~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~-~~ig~~~~i~~~~----~-~~---~~i~~~~~ 339 (430)
T PRK14359 269 EEGVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKN-THIGNFVETKNAK----L-NG---VKAGHLSY 339 (430)
T ss_pred CCCCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEec-cEEcCcEEEcccE----e-cc---cccccccc
Confidence 888888 6777788999999999887889999999999999999974 4667664443322 1 34 79999999
Q ss_pred eeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 388 IKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 388 i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
|++|+||++|.||+++++.+..+..++ .+||++++||+++.| ||++++||+||+|
T Consensus 340 i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v 400 (430)
T PRK14359 340 LGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTV 400 (430)
T ss_pred ccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 999999999999999999998777665 489999999999887 9999999999875
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=355.70 Aligned_cols=380 Identities=21% Similarity=0.263 Sum_probs=268.0
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|++++++++++..+.+.+++.+ + +
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~-~----~------ 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN-R----D------ 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC-C----C------
Confidence 7899999999999996 689999999999 99999999999999999999999988888777643 1 1
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-ee-ecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
+.+.. +.. +.|+++++++++.+++. .++|++++||+ ++ ..++.++++.|.+. ..++++.+.
T Consensus 66 -i~~~~--~~~-------~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~ 128 (451)
T TIGR01173 66 -VNWVL--QAE-------QLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL 128 (451)
T ss_pred -cEEEE--cCC-------CCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec
Confidence 22221 111 25899999999998863 36899999998 44 44588889888664 356666665
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~--- 243 (442)
++ +..|+.+..|+++++..+.|||....... ..+.+++|+|+|++++|.++++.....
T Consensus 129 ~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~~-----------------~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~ 189 (451)
T TIGR01173 129 PD--PTGYGRIIRENDGKVTAIVEDKDANAEQK-----------------AIKEINTGVYVFDGAALKRWLPKLSNNNAQ 189 (451)
T ss_pred CC--CCCCCEEEEcCCCCEEEEEEcCCCChHHh-----------------cCcEEEEEEEEEeHHHHHHHHHhccccccc
Confidence 43 56689888888889999999876432100 124678999999999876666654322
Q ss_pred Ccccccchhhhcccc-cceEEEEecce--eeecCChHHHHHHhhhhhcCCC------C-------c------------cc
Q 013483 244 ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHPP------M-------F------------SF 295 (442)
Q Consensus 244 ~~~~~~~~l~~~i~~-~~i~~~~~~g~--~~di~t~~~~~~an~~~l~~~~------~-------~------------~~ 295 (442)
...+..++++.++++ .++++|+++++ |+++++|++|.+++..+..+.. . . ..
T Consensus 190 ~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~ 269 (451)
T TIGR01173 190 GEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVE 269 (451)
T ss_pred CcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCE
Confidence 122335788888875 57999999887 9999999999888765543110 0 0 11
Q ss_pred cCCCCcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhh-h-hh
Q 013483 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE-V-AS 371 (442)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~-~-~~ 371 (442)
+++.+.+.+.+.+++.+.| +++.+.++.|+++|.|+ ++.+.+++||++|.|++++.|.+.++++++..+.... . .+
T Consensus 270 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~ 349 (451)
T TIGR01173 270 IDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNA 349 (451)
T ss_pred EcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCc
Confidence 2222233333334444444 34555567777777777 5666667777777777766666554555443222210 0 12
Q ss_pred hhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 372 LLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 372 ~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
..+++ +.|++.+.+++|+||++|.||+++++.+..+..++ .+||+++|||.++.+ ||++++||+||+|
T Consensus 350 ~ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 350 RIGKG---SKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTV 423 (451)
T ss_pred EECCC---cEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEE
Confidence 22222 45555566677999999999999999887766664 589999999999876 9999999999875
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-43 Score=355.56 Aligned_cols=382 Identities=20% Similarity=0.257 Sum_probs=266.9
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|++|++||||||.|+||+ ..+||+|+|++|+ |||+|++++|.+++++++++++++..+.+.+++... +
T Consensus 3 ~~~~~aiIlAaG~gtRl~---~~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-----~--- 70 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMY---SDLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE-----P--- 70 (456)
T ss_pred CCCceEEEEcCCCCCcCC---CCCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC-----C---
Confidence 457999999999999998 4689999999999 999999999999999999999998877777776321 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe--eeecCHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
+.++. +.+ +.|++++++.++.++.. .++|++++||. +...++.++++.|++.+ +++++
T Consensus 71 ----~~~i~--~~~-------~~Gt~~al~~a~~~l~~-----~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~ 130 (456)
T PRK09451 71 ----LNWVL--QAE-------QLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLT 130 (456)
T ss_pred ----cEEEE--CCC-------CCCcHHHHHHHHHhhcc-----CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEE
Confidence 22221 111 36999999999988753 36899999998 34566888888876544 45555
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+.++ +..||.+.. ++++|.+|.|||...... ..++++++|+|+|++++|.++++...+.
T Consensus 131 ~~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~ 190 (456)
T PRK09451 131 VKLDN--PTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNN 190 (456)
T ss_pred EEcCC--CCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCc
Confidence 55544 567998754 578999999998643210 0135789999999999887777654332
Q ss_pred ---Ccccccchhhhcccc-cceEEEE------ecce--eeecCChHHHHHHhhh--hhcC-----CCCc-----------
Q 013483 244 ---ANDFGSEIIPASANE-QFLKAYL------FNDY--WEDIGTIRSFFEANLA--LTAH-----PPMF----------- 293 (442)
Q Consensus 244 ---~~~~~~~~l~~~i~~-~~i~~~~------~~g~--~~di~t~~~~~~an~~--~l~~-----~~~~----------- 293 (442)
...+..|+++.++++ .++.+|. +.|+ |.|++++++|+++|+. ++.. .+..
T Consensus 191 ~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~ 270 (456)
T PRK09451 191 NAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGR 270 (456)
T ss_pred cccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECC
Confidence 223457899999986 6888886 3565 7889999999999852 2211 1100
Q ss_pred -cccCCCCcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhh-h
Q 013483 294 -SFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE-V 369 (442)
Q Consensus 294 -~~~~~~~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~-~ 369 (442)
..+++...+.+.+.+++++.| .++.|.++.|+++|.|+ .+.+.+++||+++.|++++.|...+.++++..+.+.. +
T Consensus 271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i 350 (456)
T PRK09451 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM 350 (456)
T ss_pred CCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence 122233444444455555555 45566667777777777 5566666666666666666555444444332222110 0
Q ss_pred -hhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 370 -ASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 370 -~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.+...++ +.+++.+.+++|+||++|.||+++++.+..+..+. .+||++++||.++++ ||++++||+||+|
T Consensus 351 ~~~~i~~~---~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v 427 (456)
T PRK09451 351 KKARLGKG---SKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTV 427 (456)
T ss_pred eceeeCCC---CccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEE
Confidence 1222223 45666666788999999999999999887665553 689999999999886 8999999999875
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=347.32 Aligned_cols=385 Identities=18% Similarity=0.230 Sum_probs=259.3
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
+.+.|||||||+||||+ ..+||+|+|++|+ |||+|++++|.+.+++++++++++..+.+.+++... .
T Consensus 4 ~~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-----~---- 70 (456)
T PRK14356 4 STTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE-----D---- 70 (456)
T ss_pred cceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc-----C----
Confidence 46889999999999997 5789999999999 999999999999999999999998877776665321 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~~~~tl~~~ 164 (442)
++++.... +.|++++++.++++++.. ..++|++++||+ ++. ..+.++++.|+ ++++++...
T Consensus 71 ---~~~v~~~~---------~~Gt~~al~~a~~~l~~~---~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~ 133 (456)
T PRK14356 71 ---ARFVLQEQ---------QLGTGHALQCAWPSLTAA---GLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTL 133 (456)
T ss_pred ---ceEEEcCC---------CCCcHHHHHHHHHHHhhc---CCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEE
Confidence 22322111 368999999999888631 137899999999 444 45788888775 566788777
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC--
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP-- 242 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~-- 242 (442)
+.++ +..||.+.. ++|+|..+.||++..... ....+.++++|+|+|++++|..+++....
T Consensus 134 ~~~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~---------------~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~ 195 (456)
T PRK14356 134 TLPD--PGAYGRVVR-RNGHVAAIVEAKDYDEAL---------------HGPETGEVNAGIYYLRLDAVESLLPRLTNAN 195 (456)
T ss_pred EcCC--CCCceEEEE-cCCeEEEEEECCCCChHH---------------hhhhcCeEEEEEEEEEHHHHHHHHHhccCcc
Confidence 7665 568998876 578999999988643110 00013567999999999988766654322
Q ss_pred -CCcccccchhhhccc-ccceEEEEecc--eeeecCChHHHHHHhhhhhcCCC-------------CccccCCCCccccc
Q 013483 243 -TANDFGSEIIPASAN-EQFLKAYLFND--YWEDIGTIRSFFEANLALTAHPP-------------MFSFYDATKPIYTS 305 (442)
Q Consensus 243 -~~~~~~~~~l~~~i~-~~~i~~~~~~g--~~~di~t~~~~~~an~~~l~~~~-------------~~~~~~~~~~~~~~ 305 (442)
.......++++.+++ +.++.++.+.+ .|++++||+||.+|+..+..+.. ....+++...+.++
T Consensus 196 ~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~ 275 (456)
T PRK14356 196 KSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPG 275 (456)
T ss_pred cCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCC
Confidence 122334577877765 45789988865 57999999999999877765421 00111222222222
Q ss_pred ------------CccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchh-hh-
Q 013483 306 ------------RRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDA-EV- 369 (442)
Q Consensus 306 ------------~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~-~~- 369 (442)
+.+++++.| .++.|.+++|+++|.|+ .+.+.+++||++|.|++++.|.+++++|++..+... +.
T Consensus 276 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~ 355 (456)
T PRK14356 276 AEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMK 355 (456)
T ss_pred CEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceee
Confidence 223333333 34444556666666666 455556666666666665555544444433111110 00
Q ss_pred hhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 370 ASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 370 ~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.+...++ +.+++++++++|+||+++.||+++++.+..+...+ .+||+++++|.++++ ||++++|++||+|
T Consensus 356 ~~~i~~~---~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v 431 (456)
T PRK14356 356 KAVLGKG---AKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSVI 431 (456)
T ss_pred eeEecCC---cEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCEE
Confidence 0112222 45556666677888888888888888776554443 589999999999886 8999999999875
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=320.61 Aligned_cols=348 Identities=21% Similarity=0.332 Sum_probs=254.3
Q ss_pred cccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccC-hhhHHHHHHhhccCCCCc
Q 013483 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN-SASLNRHLARAYNYGSGV 83 (442)
Q Consensus 5 ~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~-~~~i~~~~~~~~~~~~~~ 83 (442)
.|.+++||++|||.||||..++...|||||||+|+ |||+|+|+||.++|+++++|++... ...+...+...+.. .+
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l--~~ 82 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDL--KK 82 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcc--cc
Confidence 47889999999999999999999999999999999 9999999999999999999999763 34666666554321 11
Q ss_pred ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEE
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
+. ..+++....+. ..||+++|+.....+.. +|||+++||.+++.++..++++|+..++.+.|++
T Consensus 83 ~~--~~v~ip~~~~~--------d~gtadsLr~Iy~kikS------~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli 146 (433)
T KOG1462|consen 83 RP--DYVEIPTDDNS--------DFGTADSLRYIYSKIKS------EDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLI 146 (433)
T ss_pred cc--cEEEeeccccc--------ccCCHHHHhhhhhhhcc------CCEEEEecccccCCCcHHHHHHHhccChhHhHHh
Confidence 10 12444333322 26999999999988873 7999999999999999999999998877655554
Q ss_pred eecCC---------CcCCcccEEEEcCCC-ceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 013483 164 LPMDD---------SRASDFGLMKINNEG-RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (442)
Q Consensus 164 ~~~~~---------~~~~~~g~v~~d~~~-~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l 233 (442)
.+... +....+.++..++++ |+. |... +....+.+.+.+++|+-+|.... .+.|.++++|+|+.+++
T Consensus 147 ~~~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~-y~~~-~~d~~~~l~i~~slL~~~prltl-~t~L~dahiY~~k~~v~ 223 (433)
T KOG1462|consen 147 GNALSEVPIPGQKGKKKQARDVIGINEDTERLA-YSSD-SADEEEPLVIRKSLLWNHPRLTL-TTKLVDAHIYVFKHWVI 223 (433)
T ss_pred ccccccccccCcccccccccceeeeccccceeE-Eeec-CCcCCCceehhhhhhhcCCceEE-eccccceeeeeeHHHHH
Confidence 42211 111223344444443 433 3322 22233567788999999999876 55789999999999999
Q ss_pred HHHHhhhCCCCcccccchhhhccccc---------------------------------ceEEEEec--ceeeecCChHH
Q 013483 234 LNLLRWRFPTANDFGSEIIPASANEQ---------------------------------FLKAYLFN--DYWEDIGTIRS 278 (442)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~l~~~i~~~---------------------------------~i~~~~~~--g~~~di~t~~~ 278 (442)
..+.+. +...+|..+++|.+++.+ ++++|... ..+.+++|.-.
T Consensus 224 d~l~~~--~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~ 301 (433)
T KOG1462|consen 224 DLLSEK--ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLS 301 (433)
T ss_pred HHHhcC--CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHH
Confidence 644332 334566667777766421 23444443 56889999999
Q ss_pred HHHHhh--hhhcCCCCccccCCCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEece
Q 013483 279 FFEANL--ALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDT 355 (442)
Q Consensus 279 ~~~an~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~ 355 (442)
|+++|+ .+....+..... ...+... + +.+ .++.++++|.|+ ++.|++|+||.+|.||+++++.+|
T Consensus 302 y~eiN~~k~~~~l~~e~~~~------k~~~~~~--~-l~g---~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nS 369 (433)
T KOG1462|consen 302 YMEINRDKKLKKLCSEAKFV------KNYVKKV--A-LVG---ADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANS 369 (433)
T ss_pred HHhhhHHHHHHHhccccccc------cchhhhe--e-ccc---hhhccCCCceecccceeeeeeecCCccccCCcEEEee
Confidence 999994 433322221111 1111000 1 111 168899999999 888899999999999999999999
Q ss_pred EEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEcc
Q 013483 356 MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~ 407 (442)
.+|.+ +.||++|.|.+||||+++.||+|+++.|
T Consensus 370 ilm~n-------------------V~vg~G~~IensIIg~gA~Ig~gs~L~n 402 (433)
T KOG1462|consen 370 ILMDN-------------------VVVGDGVNIENSIIGMGAQIGSGSKLKN 402 (433)
T ss_pred EeecC-------------------cEecCCcceecceecccceecCCCeeee
Confidence 99998 9999999999999999999999999986
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=308.86 Aligned_cols=326 Identities=25% Similarity=0.379 Sum_probs=259.8
Q ss_pred cceEEEEEeCC--CCCCCcccccCCCccceeecCccceehhhhhhhhh-cCCcEEEEEeccChhhHHHHHHhhccCCCCc
Q 013483 7 RTVAAVILGGG--AGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (442)
Q Consensus 7 ~~~~aVILAaG--~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~-~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~ 83 (442)
++++||||.|| +||||+||+.+.||||+|++|+ |||+|.|+.+.+ .|..+|+++--|+.+.+.+|+.... ..
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~---~e- 75 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ---QE- 75 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH---hh-
Confidence 46899999999 7999999999999999999999 999999999998 6899999998888877777775432 11
Q ss_pred ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEE
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
|. +.+-+..+. .|+||+++|.++++.+-. ...+.|.|++||...+.++.++++.|+..+...||++
T Consensus 76 -~~---~pvrYL~E~-------~plGtaGgLyhFrdqIl~---g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~ 141 (407)
T KOG1460|consen 76 -FK---VPVRYLRED-------NPLGTAGGLYHFRDQILA---GSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLV 141 (407)
T ss_pred -cc---cchhhhccC-------CCCCcccceeehhhHHhc---CCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEE
Confidence 11 112222232 258999999999988854 3368999999999999999999999999999999999
Q ss_pred eecCCCcCCcccEEEEc-CCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC-
Q 013483 164 LPMDDSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF- 241 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d-~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~- 241 (442)
.....++.+.||.+..| .+++|..+.|||...- |+..++|+|+|++++|..+ ++.+
T Consensus 142 tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i-~~v~~ 199 (407)
T KOG1460|consen 142 TKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAI-AEVYR 199 (407)
T ss_pred EEecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHH-HHHHH
Confidence 99998889999999987 5789999999998764 4788999999999988533 2211
Q ss_pred ------------C----CCc---ccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCC--CCcc-cc---
Q 013483 242 ------------P----TAN---DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP--PMFS-FY--- 296 (442)
Q Consensus 242 ------------~----~~~---~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~--~~~~-~~--- 296 (442)
+ ... .+..|++..++...++|+|...++|..+.|+.+-+.||+.++++. .+.. +.
T Consensus 200 q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~p 279 (407)
T KOG1460|consen 200 QRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGP 279 (407)
T ss_pred HHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCC
Confidence 0 011 234678888888999999999999999999999999999999853 1111 11
Q ss_pred CCCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhc
Q 013483 297 DATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLA 374 (442)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 374 (442)
+..+.+.+ +++|...+.+. .+.| .++.||.+++||+|++|.+|+++++
T Consensus 280 gt~a~Iig----------------dVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d-------------- 329 (407)
T KOG1460|consen 280 GTQAEIIG----------------DVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDD-------------- 329 (407)
T ss_pred CCCceEEe----------------eeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccC--------------
Confidence 01111222 44445555554 3444 4889999999999999999999998
Q ss_pred CCCcceEeCCCcEeeeeEeCCCcEECCCeEEccC
Q 013483 375 EGRVPVGIGENTKIKECIIDKNARIGKNVIIANS 408 (442)
Q Consensus 375 ~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~ 408 (442)
+.|.+|+++.+|+||.+|.||..+-+...
T Consensus 330 -----~ei~enavVl~sIigw~s~iGrWaRVe~~ 358 (407)
T KOG1460|consen 330 -----AEIEENAVVLHSIIGWKSSIGRWARVEGI 358 (407)
T ss_pred -----cEeeccceEEeeeecccccccceeeeccc
Confidence 99999999999999999999988887643
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=340.33 Aligned_cols=382 Identities=21% Similarity=0.263 Sum_probs=258.1
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|+++.|||||||.|+||++ .+||+|+|++|+ |||+|++++|..+++++++|++++..+.+.+++.+. ...
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~---~~~--- 72 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI---APD--- 72 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc---CCC---
Confidence 5678999999999999983 589999999999 999999999999999999999999888888777431 100
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~ 163 (442)
+.+.. +. .+.|++++++.++.++... .++|++++||+ +++.+ +.++++ +.+.++++++..
T Consensus 73 ----~~~~~--~~-------~~~G~~~sl~~a~~~l~~~----~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~~ 134 (446)
T PRK14353 73 ----AEIFV--QK-------ERLGTAHAVLAAREALAGG----YGDVLVLYGDTPLITAETLARLRE-RLADGADVVVLG 134 (446)
T ss_pred ----ceEEE--cC-------CCCCcHHHHHHHHHHHhcc----CCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEEE
Confidence 11111 11 1368999999999888521 37899999998 55544 677776 444566777777
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+..+ +..|+.+.. ++++|..+.|||...... ..+.++++|+|.|+++.|.+++++....
T Consensus 135 ~~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 194 (446)
T PRK14353 135 FRAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGND 194 (446)
T ss_pred EEeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhccc
Confidence 66543 567888777 578999999988643210 0124679999999998776676654321
Q ss_pred ---Ccccccchhhhcccc-cceEEEEec-ceeeecCChHHHHHHhhhhhcCC------CCcccc-------CCCCccccc
Q 013483 244 ---ANDFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHP------PMFSFY-------DATKPIYTS 305 (442)
Q Consensus 244 ---~~~~~~~~l~~~i~~-~~i~~~~~~-g~~~di~t~~~~~~an~~~l~~~------~~~~~~-------~~~~~~~~~ 305 (442)
...+..+.++.+++. .+++++..+ +.|.++++|+||.+|+..+..+. ....+. ++.+.+.++
T Consensus 195 ~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 274 (446)
T PRK14353 195 NAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRD 274 (446)
T ss_pred CCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCC
Confidence 223346778888764 579999886 57999999999999997553221 111222 223333333
Q ss_pred CccCCCceecCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhh--hhhhcCCCcceEe
Q 013483 306 RRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEV--ASLLAEGRVPVGI 382 (442)
Q Consensus 306 ~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i 382 (442)
+.+++++.+.. ++.|+++|.|+ .+.|.+++||++|+|++++.|...+++|+++.+.+... .+...++ +.+
T Consensus 275 ~~i~~~~~I~~----~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~---~~i 347 (446)
T PRK14353 275 VVIEPNVVFGP----GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG---AKV 347 (446)
T ss_pred CEECCCCEECC----CCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC---CEE
Confidence 34444333311 34555555555 44445556666666665555554444444422222110 0111111 566
Q ss_pred CCCcEeeeeEeCCCcEECCCeEEccCCCccc-ceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 383 GENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 383 ~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++++.+++++||++|.||+++++.+..+... ..+||++++||.+++| ||++++||+||+|
T Consensus 348 ~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 348 NHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVI 413 (446)
T ss_pred CCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEE
Confidence 6666777889999999999998877665444 3589999999999887 9999999999875
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=338.76 Aligned_cols=375 Identities=21% Similarity=0.252 Sum_probs=255.7
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|+|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.+.+ ++++|++++..+.+.+++.. +
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~------~------ 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE------W------ 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc------c------
Confidence 7899999999999983 789999999999 99999999999975 89999999887777666532 1
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe--eeecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
+.++. +.+ ++|++++++.++.++.. .++|++++||. +...++.++++.|+++++++|+++.+.
T Consensus 64 -~~~~~--~~~-------~~g~~~ai~~a~~~l~~-----~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~ 128 (448)
T PRK14357 64 -VKIFL--QEE-------QLGTAHAVMCARDFIEP-----GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADL 128 (448)
T ss_pred -cEEEe--cCC-------CCChHHHHHHHHHhcCc-----CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEc
Confidence 12211 111 36999999999998853 37899999998 445668999999988889999988877
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC--
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-- 244 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~-- 244 (442)
++ +..||.+..+ ++++ .+.||+..+... ...++.++|+|+|++++|.++++...+..
T Consensus 129 ~~--~~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~ 187 (448)
T PRK14357 129 ED--PTGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAK 187 (448)
T ss_pred CC--CCCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCC
Confidence 64 6789988776 6777 777876533210 01257899999999998877666533221
Q ss_pred -cccccchhhhcccccceEEEEecce--eeecCChHHHHHHhhhhhcCC------CCccc-------cCCCCcccccCcc
Q 013483 245 -NDFGSEIIPASANEQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSF-------YDATKPIYTSRRN 308 (442)
Q Consensus 245 -~~~~~~~l~~~i~~~~i~~~~~~g~--~~di~t~~~~~~an~~~l~~~------~~~~~-------~~~~~~~~~~~~~ 308 (442)
.....|+++.+ .++.+|...++ |.+++++++|..+...+.... ....+ +++.+.+..++.+
T Consensus 188 ~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i 264 (448)
T PRK14357 188 GEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTII 264 (448)
T ss_pred CeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEE
Confidence 12224666665 34788888887 667779999988766543210 11122 2222233333322
Q ss_pred ------------CCCcee-cCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhh--hhhh
Q 013483 309 ------------LPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEV--ASLL 373 (442)
Q Consensus 309 ------------~~~~~i-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~--~~~~ 373 (442)
++++.| .++.+.+++|+++|.|..+.+.+++|++++.|++++.|++.+++|++..+.+... .+..
T Consensus 265 ~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i 344 (448)
T PRK14357 265 YPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTI 344 (448)
T ss_pred cCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEE
Confidence 333333 2334444556666666544555666777777777766665555555433222110 1112
Q ss_pred cCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 374 AEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 374 ~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+++ +.+++.+++++++||++|.||+++++.+..+...+ .+||++++||.+++| ||++++||+||+|
T Consensus 345 g~~---~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 345 GEN---TKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred cCC---cCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 222 34445556677889999999999988877766665 689999999999876 8999999999875
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=336.78 Aligned_cols=384 Identities=22% Similarity=0.289 Sum_probs=264.3
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
|+++|||||||.|+||+ ..+||+|+|++|+ |||+|++++|.+++++++++++++..+++.+++.. +
T Consensus 1 m~~~avIlAaG~g~Rl~---~~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~------~---- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMK---SKLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD------R---- 66 (458)
T ss_pred CCceEEEEeCCCCcccC---CCCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC------C----
Confidence 46789999999999998 4689999999999 99999999999999999999999988888777632 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-ee-ecCHHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~~~~~~~~~tl~~~ 164 (442)
+.++. +.. ++|++++++.++.+++.. .++|++++||. ++ ..++.++++.|++.++++|+++.
T Consensus 67 ---~~~~~--~~~-------~~g~~~al~~a~~~l~~~----~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~ 130 (458)
T PRK14354 67 ---SEFAL--QEE-------QLGTGHAVMQAEEFLADK----EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTA 130 (458)
T ss_pred ---cEEEE--cCC-------CCCHHHHHHHHHHHhccc----CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEE
Confidence 11111 111 369999999999988531 26799999997 44 45689999999887788888776
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~- 243 (442)
..++ +..|+.+..|+++++..+.|||...... ...++.++|+|+|+++.|.+++++....
T Consensus 131 ~~~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~ 191 (458)
T PRK14354 131 IAEN--PTGYGRIIRNENGEVEKIVEQKDATEEE-----------------KQIKEINTGTYCFDNKALFEALKKISNDN 191 (458)
T ss_pred EcCC--CCCceEEEEcCCCCEEEEEECCCCChHH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhCccc
Confidence 6543 5668888888888999999987532100 0135679999999998665666654332
Q ss_pred --Ccccccchhhhcccc-cceEEEEecce--eeecCChHHHHHHhhhhhcCCC------CccccCCC-------Ccccc-
Q 013483 244 --ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHPP------MFSFYDAT-------KPIYT- 304 (442)
Q Consensus 244 --~~~~~~~~l~~~i~~-~~i~~~~~~g~--~~di~t~~~~~~an~~~l~~~~------~~~~~~~~-------~~~~~- 304 (442)
......+.++.+++. .++++|.++++ |+++++++||.+|+..+..+.. ...+++++ +.+..
T Consensus 192 ~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~ 271 (458)
T PRK14354 192 AQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSD 271 (458)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCC
Confidence 122235777777754 57999998865 5678899999998865432211 11222221 22222
Q ss_pred -----------cCccCCCcee-cCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchh-hh-h
Q 013483 305 -----------SRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDA-EV-A 370 (442)
Q Consensus 305 -----------~~~~~~~~~i-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~-~~-~ 370 (442)
.+.++.++.| .++.|.++.|+++|.|+.+.+.+++||++|.|++++.|...+++|++..+... .. .
T Consensus 272 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~ 351 (458)
T PRK14354 272 TVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKK 351 (458)
T ss_pred CEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEee
Confidence 2233333333 34444556667777776555566777777777776666654444544222111 00 1
Q ss_pred hhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCccc-ceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 371 SLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 371 ~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
....++ +.+++.+.+++++||++|.||+++.+.|..+..+ ..+++++++||.++++ ||++++||+||+|
T Consensus 352 ~~i~~~---~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v 426 (458)
T PRK14354 352 STIGEG---TKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTI 426 (458)
T ss_pred eEECCC---CEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCCCEE
Confidence 111222 4555666667888888999999988887666555 4589999999999886 8999999999875
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=332.93 Aligned_cols=381 Identities=20% Similarity=0.275 Sum_probs=272.6
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|.+||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++++++++|++++..+.+.+++.+..
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----------- 66 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP----------- 66 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC-----------
Confidence 6899999999999984 689999999999 9999999999999999999999988877777764310
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-e-eecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-L-YRMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i-~~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
.+.++. +.. +.|++++++.++.+++.. .++|++++||. + ...++.++++.|++.+++++++..+.
T Consensus 67 ~i~~v~--~~~-------~~G~~~sv~~~~~~l~~~----~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 133 (450)
T PRK14360 67 GLEFVE--QQP-------QLGTGHAVQQLLPVLKGF----EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL 133 (450)
T ss_pred CeEEEE--eCC-------cCCcHHHHHHHHHHhhcc----CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 133332 111 258999999998888531 35799999999 3 44568999999998888888877665
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC--
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-- 244 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~-- 244 (442)
++ +..||.+..|++++|.++.|||...... ..++++++|+|+|++++|.+++++..+..
T Consensus 134 ~~--~~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~ 194 (450)
T PRK14360 134 PN--PKGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQ 194 (450)
T ss_pred CC--CCCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccC
Confidence 54 5669998888889999999998642210 02467899999999998877776644321
Q ss_pred -cccccchhhhcccccceEEEEecce--eeecCChHHHHHHhhhhhcCC------CCccccCC-----------------
Q 013483 245 -NDFGSEIIPASANEQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDA----------------- 298 (442)
Q Consensus 245 -~~~~~~~l~~~i~~~~i~~~~~~g~--~~di~t~~~~~~an~~~l~~~------~~~~~~~~----------------- 298 (442)
..+..+.++.+. .+..+.+.++ |..+++++++..+...+.... +...++++
T Consensus 195 ~e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i 271 (450)
T PRK14360 195 KEYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVII 271 (450)
T ss_pred CceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEE
Confidence 122345555553 3455656654 566999999988766543211 11111222
Q ss_pred --CCcccccCccCCCcee-cCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhh--hhhhh
Q 013483 299 --TKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE--VASLL 373 (442)
Q Consensus 299 --~~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~--~~~~~ 373 (442)
...+.+.+.+++++.+ .++.|.++.|+++|.|+.+.+.+++||++|.|++++.|++.+++|+++.+.... ..++.
T Consensus 272 ~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i 351 (450)
T PRK14360 272 EPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQL 351 (450)
T ss_pred CCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEecccc
Confidence 1223333444555555 455566677778887775566678888888888888887666666665444321 12333
Q ss_pred cCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 374 AEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 374 ~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.++ +.|++++++++++||++|.||+++++.+..+.... .+||++++||.++++ ||++++|++||+|
T Consensus 352 ~~~---~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v 423 (450)
T PRK14360 352 GEG---SKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTI 423 (450)
T ss_pred CCC---cEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEE
Confidence 333 56677777788899999999999999987777764 589999999999876 8999999999875
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=318.90 Aligned_cols=380 Identities=18% Similarity=0.315 Sum_probs=281.5
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
...+|||+||.-.-+||+|+|...|++|||++|. |||+|+|+||.++|+.++++++..+..++.+|+++.. |....++
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~se-w~~~~~~ 99 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSE-WYLPMSF 99 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhcc-ccccccc
Confidence 3568999999999999999999999999999999 9999999999999999999999999999999998743 3323232
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHc-----CCcEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS-----GADIT 160 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~-----~~~~t 160 (442)
. .+.|... . +...|+++|...+. +...+||++++||++.+.+|.+++++|+.+ ++.+|
T Consensus 100 ~--v~ti~s~-~---------~~S~GDamR~id~k-----~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMT 162 (673)
T KOG1461|consen 100 I--VVTICSG-E---------SRSVGDAMRDIDEK-----QLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMT 162 (673)
T ss_pred e--EEEEcCC-C---------cCcHHHHHHHHHhc-----ceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEE
Confidence 1 1222221 1 24678888776532 122589999999999999999999999654 56788
Q ss_pred EEEeecCCCcCCcccEEEEcC-CCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 013483 161 ISCLPMDDSRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (442)
Q Consensus 161 l~~~~~~~~~~~~~g~v~~d~-~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~ 239 (442)
|++.+.......+--.+..|. +.++..+.+-. ....+.+++++++-..++-.. +.+|.++++-++++.++..+.++
T Consensus 163 mv~k~~st~~~~~~~~~avd~~T~~ll~yq~~~--~~~~~~~l~~sl~d~~~~v~v-r~DL~dc~IdIcS~~V~sLF~dN 239 (673)
T KOG1461|consen 163 MVFKESSTRETTEQVVIAVDSRTSRLLHYQKCV--REKHDIQLDLSLFDSNDEVEV-RNDLLDCQIDICSPEVLSLFTDN 239 (673)
T ss_pred EEEeccccccCCcceEEEEcCCcceEEeehhhc--ccccccccCHHHhcCCCcEEE-EccCCCceeeEecHhHHHHhhhc
Confidence 888876422123333455554 56888776511 122356678888877655444 56899999999999998644333
Q ss_pred hCC--CCcccccchhhhcccccceEEEEecc--eeeecCChHHHHHHhhhhhcCCCCccccCCCCcccc-------cCc-
Q 013483 240 RFP--TANDFGSEIIPASANEQFLKAYLFND--YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT-------SRR- 307 (442)
Q Consensus 240 ~~~--~~~~~~~~~l~~~i~~~~i~~~~~~g--~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~-------~~~- 307 (442)
|. .+.+|...+|..-+-+.+|+++.... |..++.+++.|...++.++.|+..+ +-|+....+ +..
T Consensus 240 -FDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP--~Vpd~~~~~~q~~~~~r~~I 316 (673)
T KOG1461|consen 240 -FDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYP--LVPDINFSGNQTFSLERRNI 316 (673)
T ss_pred -ccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhccc--ccccccCCCCceeeeccccc
Confidence 32 24566667777777789999998875 8999999999999999999987322 112221111 111
Q ss_pred -cCCCcee-cCCcee-eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeC
Q 013483 308 -NLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 383 (442)
Q Consensus 308 -~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 383 (442)
-++.+.+ ..+.+. ++.||.++.|+ ++.|.+|+||.+|.||.+++|.++.++.+ |.||
T Consensus 317 Yk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Ig 377 (673)
T KOG1461|consen 317 YKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIG 377 (673)
T ss_pred ccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEEC
Confidence 1222333 223332 68889999999 78889999999999999999999999887 9999
Q ss_pred CCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCccC
Q 013483 384 ENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 442 (442)
Q Consensus 384 ~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~i 442 (442)
+||.|.+|+||+++.|++|+++.. |+.+|.+ +|+|++-.++.++.|
T Consensus 378 dnc~I~~aii~d~v~i~~~~~l~~------------g~vl~~~-VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 378 DNCRIDHAIICDDVKIGEGAILKP------------GSVLGFG-VVVGRNFVLPKNSKV 423 (673)
T ss_pred CCceEeeeEeecCcEeCCCcccCC------------CcEEeee-eEeCCCccccccccc
Confidence 999999999999999999999975 5666666 445777777666543
|
|
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=296.10 Aligned_cols=233 Identities=27% Similarity=0.507 Sum_probs=200.7
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChh-hHHHHHHhhccCCCCcccCC
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~~~~ 87 (442)
|++||||||.||||+|+|...||+|+||.+| |||+|.|+.|..+||++|.|+++++.. .+++++ +++.+|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~ll------Gdgs~~g- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKELL------GDGSDFG- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhhh------cCccccC-
Confidence 7999999999999999999999999999999 999999999999999999999998664 444443 5666666
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecC
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~ 167 (442)
+.+.+..|++ +.|.++|+..+.+++.+ ++|+++.||.++..++.++++.+.++..+.++++.+++
T Consensus 73 --v~itY~~Q~~-------p~GlA~Av~~a~~fv~~------~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~ 137 (286)
T COG1209 73 --VDITYAVQPE-------PDGLAHAVLIAEDFVGD------DDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD 137 (286)
T ss_pred --cceEEEecCC-------CCcHHHHHHHHHhhcCC------CceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC
Confidence 4455555654 57999999999999984 89999999998777999999999998889999999998
Q ss_pred CCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-Ccc
Q 013483 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-AND 246 (442)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~~~ 246 (442)
+ |++||+++.|+++++.++.|||..+. |+++-+|+|+|++++|. .++...|. +..
T Consensus 138 d--P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGE 193 (286)
T COG1209 138 D--PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGE 193 (286)
T ss_pred C--cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCc
Confidence 6 89999999998899999999999875 58999999999999994 67776665 333
Q ss_pred cc-cchhhhcccc-cceEEEEecceeeecCChHHHHHHhhhhhc
Q 013483 247 FG-SEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 247 ~~-~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an~~~l~ 288 (442)
++ .|+++.++++ ..+......|.|.|.||+++|++||+....
T Consensus 194 lEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 194 LEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred eEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 33 6888888875 456666777899999999999999998875
|
|
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=292.69 Aligned_cols=244 Identities=19% Similarity=0.295 Sum_probs=189.9
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccC------
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNY------ 79 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~------ 79 (442)
|.+|+|||||||.||||+|+|..+||||+||+|+ |+|+|+++++..+|+++|+|++++..+++.+|+...+.+
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 4589999999999999999999999999999999 999999999999999999999999999999998643211
Q ss_pred ----------CCCcccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeee-------
Q 013483 80 ----------GSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR------- 142 (442)
Q Consensus 80 ----------~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~------- 142 (442)
....+++ +.+.+..|. +++||++|++++..++.+ ++|+|++||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~i~~~~q~-------~~lGtg~Av~~a~~~l~~------~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPG---VTIMNVRQA-------QPLGLGHSILCARPVVGD------NPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCC---ceEEEeeCC-------CcCchHHHHHHHHHHhCC------CCEEEEECCeeccccccccc
Confidence 0000111 223333333 258999999999999963 6899999999886
Q ss_pred -cCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEc----CCCc---eEEEEeCCCccccccccccccccccccccc
Q 013483 143 -MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN----NEGR---VLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (442)
Q Consensus 143 -~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d----~~~~---v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (442)
.++.++++.|.++++.++++. ..+ .++..||.+..| ++++ |.++.|||..+..
T Consensus 144 ~~~l~~li~~~~~~~~~~~~~~-~~~-~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------- 204 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQVLAK-RMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred hhHHHHHHHHHHHhCCcEEEEE-EcC-CCCccceEEEecccccCCCCeeeEeEEEECCCCccc-----------------
Confidence 478899999987776664443 332 227899999983 3564 5888999864321
Q ss_pred ccccceeeeeEEEEeHHHHHHHHhhhCCC-C-cccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 215 EEKPYIASMGVYLFKKEILLNLLRWRFPT-A-NDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 215 ~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~-~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
..++++++|+|+|++++|. .++...+. . .....|+++.++++++++++.++|+|+|+|+|++|++||..+.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 -LDSDLMAVGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCcCEEEEEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 0246899999999999986 55553332 1 1123588999999889999999999999999999999999875
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=283.85 Aligned_cols=241 Identities=37% Similarity=0.620 Sum_probs=189.9
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEe-ccChhhHHHHHHhhccCCCCcccCCc
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-QYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~-~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
||||||||+||||+|+|..+||||+|++|++|||+|+|++|.++|++++++|+ ++..+.+.+++..... ++
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~~------~~-- 72 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGYK------FG-- 72 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSGG------GT--
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeeccccccccccccccc------cc--
Confidence 69999999999999999999999999999989999999999999999955555 4677788888865432 22
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCC
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~ 168 (442)
+++....|.. ..||++||+.+...+... ...++|++++||++++.++.++++.|+++++++++.+...+.
T Consensus 73 -~~i~~i~~~~-------~~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 142 (248)
T PF00483_consen 73 -VKIEYIVQPE-------PLGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPV 142 (248)
T ss_dssp -EEEEEEEESS-------SSCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEES
T ss_pred -ccceeeeccc-------ccchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhccccccccccccccc
Confidence 2222222332 269999999999999851 001249999999999999999999999998854443333334
Q ss_pred CcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHh--hhCCCCcc
Q 013483 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR--WRFPTAND 246 (442)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~--~~~~~~~~ 246 (442)
.+++.||++..|++++|.++.|||..+.. +.++++|+|+|++++|..+++ ........
T Consensus 143 ~~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~ 202 (248)
T PF00483_consen 143 EDPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGED 202 (248)
T ss_dssp SGGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSH
T ss_pred cccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhh
Confidence 44789999999988999999999986541 368899999999999976654 11123445
Q ss_pred cccchhhhccccc-ceEEEEecc--eeeecCChHHHHHHhhhhhc
Q 013483 247 FGSEIIPASANEQ-FLKAYLFND--YWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 247 ~~~~~l~~~i~~~-~i~~~~~~g--~~~di~t~~~~~~an~~~l~ 288 (442)
+..++++.+++++ .+.++..++ +|.|+|+|++|++||+.+++
T Consensus 203 ~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 203 FLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 6678999999875 566888888 79999999999999999874
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=285.40 Aligned_cols=244 Identities=18% Similarity=0.279 Sum_probs=191.6
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCC-----
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG----- 80 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~----- 80 (442)
|.+|+|||||||.||||+|+|..+||||+||+|+ |+|+|+++++.++|+++|+|++++..+++.+|+...+.+.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 5689999999999999999999999999999999 9999999999999999999999999999999996432110
Q ss_pred -----------CCcccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeee-------
Q 013483 81 -----------SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR------- 142 (442)
Q Consensus 81 -----------~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~------- 142 (442)
...+++ +.+.+..|.. ++||++|+++++.++. .++|+|++||++++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~~-------~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQGQ-------PLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecCC-------cCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000011 2233333432 4799999999999985 37899999999886
Q ss_pred -cCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEc----CCC---ceEEEEeCCCccccccccccccccccccccc
Q 013483 143 -MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN----NEG---RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (442)
Q Consensus 143 -~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d----~~~---~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (442)
.++.++++.|.+.+++++++....+ ++..||.+..| +++ +|+.+.|||..+..
T Consensus 144 ~~dl~~li~~h~~~~~~~~~~~~~~~--~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQVLAKRMPG--DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEEEEEECCC--CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 4789999999888777554443332 47889999985 355 68899999964321
Q ss_pred ccccceeeeeEEEEeHHHHHHHHhhhCCC--CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 215 EEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 215 ~~~~~l~~~Giy~~~~~~l~~~l~~~~~~--~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
..++++++|+|+|++++|..+ ....+. ......++++.+++++++.+|.++|+|+|+|+|++|++|+..+.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPEL-ERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHH-HhCCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 024688999999999998655 433222 12233588999999899999999999999999999999999984
|
|
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=274.59 Aligned_cols=232 Identities=26% Similarity=0.423 Sum_probs=192.9
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|++||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++++|++++..+++.+|+.+.. .+++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~-----~~~~-- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYE-----KKLG-- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhccc-----ccCC--
Confidence 7899999999999999999999999999999 9999999999999999999999999999998886411 0111
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCC
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~ 168 (442)
+++....+.. +.|++++|+.++.++... .++|++++||++++.++.++++.|+++++++|+++.+.++
T Consensus 73 -~~i~~~~~~~-------~~G~~~al~~a~~~~~~~----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (233)
T cd06425 73 -IKITFSIETE-------PLGTAGPLALARDLLGDD----DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED 140 (233)
T ss_pred -eEEEeccCCC-------CCccHHHHHHHHHHhccC----CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 3333322221 369999999999988631 3689999999999999999999999999999999987654
Q ss_pred CcCCcccEEEEcC-CCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCccc
Q 013483 169 SRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (442)
Q Consensus 169 ~~~~~~g~v~~d~-~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~~ 247 (442)
+..||++..|+ +++|..+.|||..+. ++++++|+|+|++++|..+ .. ...+.
T Consensus 141 --~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l-~~---~~~~~ 193 (233)
T cd06425 141 --PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRI-PL---RPTSI 193 (233)
T ss_pred --ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhc-cc---Ccccc
Confidence 57899999887 789999999987542 3578999999999999644 32 12234
Q ss_pred ccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 248 ~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
..++++.++++.++.+|+++|+|.|++||++|++|++.++
T Consensus 194 ~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 194 EKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 4678999999889999999999999999999999998764
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=275.91 Aligned_cols=235 Identities=26% Similarity=0.408 Sum_probs=191.0
Q ss_pred EEEEeCC--CCCCCcccccCCCccceeecCccceehhhhhhhhh-cCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC
Q 013483 11 AVILGGG--AGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 11 aVILAaG--~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~-~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (442)
||||||| .||||+|+|..+||||+|++|+ |||+|+|++|.+ +|+++++|++++..+++.+|+.+... .++
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~-----~~~- 73 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQ-----EFN- 73 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhccc-----ccC-
Confidence 6999999 8999999999999999999999 999999999999 69999999999988899999865210 111
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecC
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~ 167 (442)
+.+.+..+.. ++||+++++.++.++... ..++|+|++||++++.++.+++++|+++++++|+++.+.+
T Consensus 74 --~~i~~~~~~~-------~~Gt~~al~~a~~~l~~~---~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~ 141 (257)
T cd06428 74 --VPIRYLQEYK-------PLGTAGGLYHFRDQILAG---NPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEAS 141 (257)
T ss_pred --ceEEEecCCc-------cCCcHHHHHHHHHHhhcc---CCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEcc
Confidence 1222222221 379999999999888521 1368999999999999999999999999999999988765
Q ss_pred CCcCCcccEEEEc-CCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---
Q 013483 168 DSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (442)
Q Consensus 168 ~~~~~~~g~v~~d-~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~--- 243 (442)
.+.+..||++..| ++++|..+.|||..+. +.++++|+|+|++++|.. +.+..+.
T Consensus 142 ~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~-i~~~~~~~~~ 199 (257)
T cd06428 142 REQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDT-IKKAFQSRQQ 199 (257)
T ss_pred ccccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHH-Hhhhcccccc
Confidence 4447889999888 6789999999987432 357899999999999854 4432221
Q ss_pred ---------------CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhh
Q 013483 244 ---------------ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 244 ---------------~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~ 286 (442)
..++..++++.++++.++++|.++|+|.||+|+++|++||+.+
T Consensus 200 e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 200 EAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred ccccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 1224468999999988999999999999999999999999864
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=275.92 Aligned_cols=235 Identities=23% Similarity=0.409 Sum_probs=186.9
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccC-hhhHHHHHHhhccCCCCcc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN-SASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~-~~~i~~~~~~~~~~~~~~~ 84 (442)
|+.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+|++|..+|+++|+|++.+. .+.+.+++.+ +.+
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~------g~~ 73 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD------GSQ 73 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC------ccc
Confidence 5679999999999999999999999999999999 9999999999999999999887644 4567777643 223
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCee-eecCHHHHHHHHHHcCCcEEEEE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i-~~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
|+.. +.+..|.. ++|+++|+..+.+++.+ ++++++.||.+ ++.++.++++.|.+.++++|+++
T Consensus 74 ~g~~---i~y~~q~~-------~~Gta~Al~~a~~~i~~------~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~ 137 (292)
T PRK15480 74 WGLN---LQYKVQPS-------PDGLAQAFIIGEEFIGG------DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFA 137 (292)
T ss_pred cCce---eEEEECCC-------CCCHHHHHHHHHHHhCC------CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEE
Confidence 4322 22223332 47999999999999963 57999999985 47889999999988888899988
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+.++ ++.||++..|++++|+++.|||..+. ++++++|+|+|+++++. .++...+.
T Consensus 138 ~~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~-~~~~~~~~ 193 (292)
T PRK15480 138 YHVND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVE-MAKNLKPS 193 (292)
T ss_pred EEcCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHH-HHhhcCCC
Confidence 77765 68999999998899999999997543 46889999999999885 45544332
Q ss_pred -Cccc-ccchhhhcccccceE-EEEecc-eeeecCChHHHHHHhhhhh
Q 013483 244 -ANDF-GSEIIPASANEQFLK-AYLFND-YWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 244 -~~~~-~~~~l~~~i~~~~i~-~~~~~g-~~~di~t~~~~~~an~~~l 287 (442)
...+ ..++++.+++++.+. .+..+| .|+|+||+++|.+|++.+.
T Consensus 194 ~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 194 ARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 1112 257888888876654 345567 5999999999999999886
|
|
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=267.57 Aligned_cols=232 Identities=25% Similarity=0.410 Sum_probs=185.1
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccCh-hhHHHHHHhhccCCCCcccCC
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~ 87 (442)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+|+++.++|++++++++++.. +++.+++.... .++
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~~------~~~- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGS------DLG- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhccc------ccC-
Confidence 7899999999999999999999999999999 99999999999999999999987654 67777775321 222
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeee-ecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~-~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
+.+.+..+.. +.|++++++.++.++.. ++|+|++||+++ +.++.++++.|.++++++|+++.+.
T Consensus 73 --~~i~~~~~~~-------~~G~~~al~~a~~~~~~------~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
T cd02538 73 --IRITYAVQPK-------PGGLAQAFIIGEEFIGD------DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEV 137 (240)
T ss_pred --ceEEEeeCCC-------CCCHHHHHHHHHHhcCC------CCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2232222321 36999999999998863 789999999854 5679999999988888889888776
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-Cc
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-AN 245 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~~ 245 (442)
++ +..||.+..|++|+|+.+.|||..+. +.+.++|+|+|++++| ++++...+. ..
T Consensus 138 ~~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l-~~l~~~~~~~~~ 193 (240)
T cd02538 138 ND--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVF-EIAKQLKPSARG 193 (240)
T ss_pred Cc--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHH-HHHHhcCCCCCC
Confidence 54 56899999988899999999986542 3568999999999988 456543322 12
Q ss_pred -ccccchhhhcccccceEEEEec--ceeeecCChHHHHHHhhhhh
Q 013483 246 -DFGSEIIPASANEQFLKAYLFN--DYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 246 -~~~~~~l~~~i~~~~i~~~~~~--g~~~di~t~~~~~~an~~~l 287 (442)
....++++.+++++++.++.++ |+|.||+||++|.+||+.+.
T Consensus 194 ~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~~ 238 (240)
T cd02538 194 ELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFVQ 238 (240)
T ss_pred eEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHHh
Confidence 2225888998887777777766 99999999999999999763
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=266.44 Aligned_cols=234 Identities=25% Similarity=0.353 Sum_probs=189.2
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC--
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD-- 87 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~-- 87 (442)
+|||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+++.+....+.+.++..
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 99999999999999999999999999999999865221111111100
Q ss_pred c------------eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHc
Q 013483 88 G------------CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS 155 (442)
Q Consensus 88 ~------------~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~ 155 (442)
. .+.+. .+. .++||+++|++++.++. .++|++++||++++.++.++++.|.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~~-------~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLV--DTG-------ESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeee--ecC-------CcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0 01111 111 24799999999999886 379999999999999999999999999
Q ss_pred CCcEEEEEeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHH
Q 013483 156 GADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLN 235 (442)
Q Consensus 156 ~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~ 235 (442)
++++|+++.+ ++..||.+..|+ ++|+.|.|||... +.++++|+|+|++++| +
T Consensus 145 ~~d~tl~~~~----~~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il-~ 196 (254)
T TIGR02623 145 GKKATVTAVQ----PPGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVL-D 196 (254)
T ss_pred CCCEEEEEec----CCCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHH-h
Confidence 9998877642 256799998875 6999999998532 2468999999999998 4
Q ss_pred HHhhhCCCCcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCC
Q 013483 236 LLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (442)
Q Consensus 236 ~l~~~~~~~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~ 290 (442)
.++.. ..++..|+++.++.+.++++|.++|+|.||+||++|.+|+..+.+..
T Consensus 197 ~l~~~---~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 197 LIDGD---ATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hcccc---CchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 55532 23456789999999889999999999999999999999999987654
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=270.22 Aligned_cols=231 Identities=26% Similarity=0.464 Sum_probs=184.8
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEec-cChhhHHHHHHhhccCCCCcccCCc
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~-~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
+|||||||.||||+|+|..+||+|+||+|+ |||+|+|++|..+|+++|+|++. +..+.+.+++.. +.+|+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~------g~~~g-- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD------GSQWG-- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc------ccccC--
Confidence 589999999999999999999999999999 99999999999999999998886 444566666643 33343
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCee-eecCHHHHHHHHHHcCCcEEEEEeecC
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISCLPMD 167 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i-~~~~l~~~l~~~~~~~~~~tl~~~~~~ 167 (442)
+.+.+..|.. +.|+++|+..+.+++.+ ++|+++.||.+ ++.++.++++.|.+.++++|+++.+.+
T Consensus 72 -~~i~~~~q~~-------~~Gta~al~~a~~~l~~------~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~ 137 (286)
T TIGR01207 72 -VNLSYAVQPS-------PDGLAQAFIIGEDFIGG------DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS 137 (286)
T ss_pred -ceEEEEEccC-------CCCHHHHHHHHHHHhCC------CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc
Confidence 2333333432 47999999999999963 68999999974 577899999999888888999888876
Q ss_pred CCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-Ccc
Q 013483 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-AND 246 (442)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~~~ 246 (442)
+ +..||++..|++++|.++.|||..+. ++++++|+|+|+++++. +++...+. ..+
T Consensus 138 ~--p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge 193 (286)
T TIGR01207 138 D--PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGE 193 (286)
T ss_pred C--HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCc
Confidence 5 67899999998899999999996442 46789999999999874 55554332 222
Q ss_pred c-ccchhhhcccccceEEEEe-cce-eeecCChHHHHHHhhhhh
Q 013483 247 F-GSEIIPASANEQFLKAYLF-NDY-WEDIGTIRSFFEANLALT 287 (442)
Q Consensus 247 ~-~~~~l~~~i~~~~i~~~~~-~g~-~~di~t~~~~~~an~~~l 287 (442)
+ ..|+++.+++++.+..+.+ .|+ |.|+|||++|++||..+.
T Consensus 194 ~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 194 LEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred EeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 2 2588888888766655555 575 999999999999998775
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=269.60 Aligned_cols=247 Identities=21% Similarity=0.332 Sum_probs=192.8
Q ss_pred ccccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCC-
Q 013483 4 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSG- 82 (442)
Q Consensus 4 ~~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~- 82 (442)
...+-|+|||||||.|+||+|+|..+||+|+|++|+ |+|+|+|+++.++|+++|+|++++..+++.+|+...+.|...
T Consensus 4 ~~~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l 82 (302)
T PRK13389 4 INTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAML 82 (302)
T ss_pred ccccceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhh
Confidence 344568999999999999999999999999999999 999999999999999999999999999999999643222100
Q ss_pred -----cccCCc-------eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeee--------
Q 013483 83 -----VTFGDG-------CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR-------- 142 (442)
Q Consensus 83 -----~~~~~~-------~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~-------- 142 (442)
..+..+ ...+.+..|. .+.|+++|+++++.++. +++|+|++||++++
T Consensus 83 ~~~~~~~~~~e~~~i~~~~~~i~~~~q~-------~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~ 149 (302)
T PRK13389 83 EKRVKRQLLDEVQSICPPHVTIMQVRQG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQ 149 (302)
T ss_pred hhhhhhHHHHhhhhccccCceEEEeecC-------CCCChHHHHHHHHHHcC------CCCEEEEeCcceeccccccccc
Confidence 000000 0122222232 24799999999998875 37899999999874
Q ss_pred cCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcC-------CCceEEEEeCCCcccccccccccccccccccccc
Q 013483 143 MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN-------EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAE 215 (442)
Q Consensus 143 ~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~-------~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~ 215 (442)
.++.++++.|.+++++ |+++.+.++ +..||.+..++ +++|..+.|||.....
T Consensus 150 ~dl~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~------------------ 208 (302)
T PRK13389 150 DNLAEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA------------------ 208 (302)
T ss_pred ccHHHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC------------------
Confidence 6899999999888776 677766644 67899998763 3579999999974321
Q ss_pred cccceeeeeEEEEeHHHHHHHHhhhCCC--CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 216 EKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 216 ~~~~l~~~Giy~~~~~~l~~~l~~~~~~--~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
.++++++|+|+|++++| ++++...+. ...+..|+++.++++.++.+|.++|+|+|+|+|++|++|+..+.
T Consensus 209 -~s~~~~~GiYi~~~~il-~~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 209 -PSNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred -CccEEEEEEEEECHHHH-HHHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 23678999999999998 466653322 22344689999999889999999999999999999999999975
|
|
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=267.20 Aligned_cols=244 Identities=24% Similarity=0.317 Sum_probs=186.8
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCC-----CCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----SGV 83 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~-----~~~ 83 (442)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+|+++.++|+++++|+++++.+++.+|+...+.+. .+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 7899999999999999999999999999999 9999999999999999999999999999999985432110 000
Q ss_pred cc-------CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeec---CHHHHHHHHH
Q 013483 84 TF-------GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQNHR 153 (442)
Q Consensus 84 ~~-------~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~---~l~~~l~~~~ 153 (442)
.+ -...+++....|. +++|++++++.++.++.. ++|+|++||.++.. ++.++++.|+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~-------~~~Gt~~al~~~~~~i~~------~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQK-------EPLGLGHAVLCAKPFIGD------EPFAVLLGDDLIDSKEPCLKQLIEAYE 146 (267)
T ss_pred HHHhhhhhcccCCceEEEEEcC-------CCCChHHHHHHHHHHhCC------CceEEEECCeEEeCCchHHHHHHHHHH
Confidence 00 0001222222222 247999999999998863 78999999997764 4899999998
Q ss_pred HcCCcEEEEEeecCCCcCCcccEEEEcC----CCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEe
Q 013483 154 QSGADITISCLPMDDSRASDFGLMKINN----EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFK 229 (442)
Q Consensus 154 ~~~~~~tl~~~~~~~~~~~~~g~v~~d~----~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~ 229 (442)
+++++ ++++.+.+.+++..||.+..|+ +++|..+.|||..... .+.++++|+|+|+
T Consensus 147 ~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (267)
T cd02541 147 KTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (267)
T ss_pred HhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcC
Confidence 77765 4555555544467899998875 2489999999864221 2357899999999
Q ss_pred HHHHHHHHhhhCCC--CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 230 KEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 230 ~~~l~~~l~~~~~~--~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
+++|..+ ...... ......++++.+++++++++|.++|+|.|++||++|++||+.+.
T Consensus 207 ~~~~~~l-~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 207 PDIFDIL-ENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHHHH-HhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 9998654 331111 12233578999998889999999999999999999999999874
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=253.20 Aligned_cols=249 Identities=22% Similarity=0.331 Sum_probs=207.0
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCC----
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGS---- 81 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~---- 81 (442)
++-++|||+|||.||||.|.|+..||-||||.++ |+|+|+++.+.++||++|++||+.....+.+|+...+.+..
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 4567999999999999999999999999999999 99999999999999999999999999999999876653321
Q ss_pred -Cc--------ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC---HHHHH
Q 013483 82 -GV--------TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD---YMDFV 149 (442)
Q Consensus 82 -~~--------~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~---l~~~l 149 (442)
++ +. ...+.+.+..|.. ++|.++|+++|+.++.+ ++|+|+.+|.++... +++++
T Consensus 81 ~~K~~~L~~v~~i-~~~~~i~~vRQ~e-------~~GLGhAVl~A~~~vg~------EpFaVlL~Ddl~~~~~~~l~qmi 146 (291)
T COG1210 81 RGKRELLEEVRSI-PPLVTISFVRQKE-------PLGLGHAVLCAKPFVGD------EPFAVLLPDDLVDSEKPCLKQMI 146 (291)
T ss_pred hCHHHHHHHHHhc-ccCceEEEEecCC-------CCcchhHHHhhhhhcCC------CceEEEeCCeeecCCchHHHHHH
Confidence 11 11 1235566677764 68999999999999984 899999999987753 78999
Q ss_pred HHHHHcCCcEEEEEeecCCCcCCcccEEE----EcCC-CceEEEEeCCCcccccccccccccccccccccccccceeeee
Q 013483 150 QNHRQSGADITISCLPMDDSRASDFGLMK----INNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMG 224 (442)
Q Consensus 150 ~~~~~~~~~~tl~~~~~~~~~~~~~g~v~----~d~~-~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 224 (442)
+.+.+.+.. ++.+.+++..+.+.||++. .+++ .+|..+.|||...++ .|+++..|
T Consensus 147 ~~ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~G 206 (291)
T COG1210 147 ELYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVG 206 (291)
T ss_pred HHHHHhCCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeee
Confidence 999888764 6677777766789999997 3333 489999999976654 57899999
Q ss_pred EEEEeHHHHHHHHhhhCCC--CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCC
Q 013483 225 VYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (442)
Q Consensus 225 iy~~~~~~l~~~l~~~~~~--~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~ 290 (442)
.|+|++++|. +|++..+. ..-+..|.+..+++.+.+++|.+.|..+|+|++..|++|+..+..+.
T Consensus 207 RYil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 207 RYVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred eeecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 9999999995 67775544 23344789999999999999999999999999999999999997654
|
|
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=262.45 Aligned_cols=240 Identities=20% Similarity=0.268 Sum_probs=182.7
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCC-----CCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----SGV 83 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~-----~~~ 83 (442)
|+|||||||.||||+|+|..+||+|+|++|+ |||+|+|+++.++|+++++|++++..+++.+|+...+.+. .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 7899999999999999999999999999999 9999999999999999999999999999999986432110 000
Q ss_pred ccC-------CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeec---CHHHHHHHHH
Q 013483 84 TFG-------DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQNHR 153 (442)
Q Consensus 84 ~~~-------~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~---~l~~~l~~~~ 153 (442)
.+. .....+....+. +++|++++++.++.++. .++|+|++||.++.. ++.++++.|+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~-------~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQK-------EQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEecC-------CCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 000 000112222222 24799999999999885 378999999997754 6999999999
Q ss_pred HcCCcEEEEEeecCCCcCCcccEEEEcC----CCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEe
Q 013483 154 QSGADITISCLPMDDSRASDFGLMKINN----EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFK 229 (442)
Q Consensus 154 ~~~~~~tl~~~~~~~~~~~~~g~v~~d~----~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~ 229 (442)
++++++ +++...+..++..||.+..|+ +++|+.+.|||..... .+.++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 888875 555454444467899988862 3699999999853221 2357899999999
Q ss_pred HHHHHHHHhhhCCCC-cccccchhhhcccccceEEEEecceeeecCChHHHHHH
Q 013483 230 KEILLNLLRWRFPTA-NDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282 (442)
Q Consensus 230 ~~~l~~~l~~~~~~~-~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~a 282 (442)
+++|..+.+...... .....++++.+++++++++|.++|+|.||+||++|++|
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 999865543221111 22235788999988899999999999999999999875
|
Built to distinquish between the highly similar genes galU and galF |
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=258.64 Aligned_cols=243 Identities=22% Similarity=0.324 Sum_probs=189.9
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC--c
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD--G 88 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~--~ 88 (442)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++.+..+|+++|+|++++..+++.+++.+....+....+.. .
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999999 99999999999999999999999999999999876432111111110 0
Q ss_pred eEEEecccccCC---cCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEee
Q 013483 89 CVEVLAATQTPG---EAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 89 ~v~i~~~~~~~~---~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
.+.+........ ...+..+.|++++++++++++.. .++|++++||++++.++.++++.|..+++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-----~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-----DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC-----CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec
Confidence 111111100000 00011136899999999998862 2689999999999999999999999989988887653
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCc
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (442)
....||.+..|++++|..+.|||..+ +.++++|+|+|+++++. .++.. ..
T Consensus 155 ----~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~-~l~~~---~~ 204 (253)
T cd02524 155 ----PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFD-YIDGD---DT 204 (253)
T ss_pred ----CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHH-hhccc---cc
Confidence 24678999998889999999998643 14678999999999985 44432 33
Q ss_pred ccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcC
Q 013483 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (442)
Q Consensus 246 ~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~ 289 (442)
.+..++++.+++++++++|.++|+|.+|+|+++|.+|++.+.+.
T Consensus 205 ~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 205 VFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred hhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 44568999999988999999999999999999999999888644
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=254.86 Aligned_cols=219 Identities=21% Similarity=0.351 Sum_probs=178.8
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCce
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 89 (442)
+|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+++.+ . .++
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~------~~~--- 69 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD-S------RFG--- 69 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc-c------cCC---
Confidence 589999999999999999999999999999 99999999999999999999999999999998864 1 112
Q ss_pred EEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHH--HcCCcEEEEEeecC
Q 013483 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHR--QSGADITISCLPMD 167 (442)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~--~~~~~~tl~~~~~~ 167 (442)
+.+.+..+.. ++.|++++++.++.++.+ ++|++++||++++.++.++++.|+ +.++.+++...+.+
T Consensus 70 ~~i~~~~~~~------~~~g~~~~l~~~~~~~~~------~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (221)
T cd06422 70 LRITISDEPD------ELLETGGGIKKALPLLGD------EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP 137 (221)
T ss_pred ceEEEecCCC------cccccHHHHHHHHHhcCC------CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC
Confidence 2233222220 136999999999998863 789999999999999999999998 45666676665544
Q ss_pred CCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCccc
Q 013483 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (442)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~~ 247 (442)
. ...||.+..|++++|..+.++|.. ++.++|+|+|++++|..+.+. ...
T Consensus 138 ~--~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~ 186 (221)
T cd06422 138 G--HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFS 186 (221)
T ss_pred C--CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----ccc
Confidence 3 578899988888899998887642 367999999999988654321 122
Q ss_pred ccchhhhcccccceEEEEecceeeecCChHHHHHH
Q 013483 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282 (442)
Q Consensus 248 ~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~a 282 (442)
..++++.++++.++.+|.++|+|.|++||++|.+|
T Consensus 187 ~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 187 LNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 35789999988899999999999999999999875
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=253.73 Aligned_cols=232 Identities=26% Similarity=0.407 Sum_probs=187.3
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++.+... ++..
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~------~~~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSR------FGVR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhh------cCCe
Confidence 7899999999999999999999999999999 99999999999999999999999988899888865321 2211
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCC
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~ 168 (442)
+.++. +. .+.|++++++.++.++. .++|++++||++++.++.++++.|..++.++++++.+.++
T Consensus 74 -i~~~~--~~-------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (236)
T cd04189 74 -ITYIL--QE-------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED 137 (236)
T ss_pred -EEEEE--CC-------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC
Confidence 22222 22 13699999999998885 2789999999999999999999999888889988887654
Q ss_pred CcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC--Ccc
Q 013483 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--AND 246 (442)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~--~~~ 246 (442)
+..|+.+..|+ ++|..+.+||..+. +.+.++|+|+|++++|..+ +...+. ...
T Consensus 138 --~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~ 192 (236)
T cd04189 138 --PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGEL 192 (236)
T ss_pred --cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeE
Confidence 56788888874 59999999886432 2567999999999988644 432221 112
Q ss_pred cccchhhhcccc-cceEEEEecceeeecCChHHHHHHhhhhhc
Q 013483 247 FGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 247 ~~~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an~~~l~ 288 (442)
...++++.+++. .++.+++++++|.+++||++|.+||+.+++
T Consensus 193 ~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 193 EITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred EHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 235788888864 579999999999999999999999998874
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=246.37 Aligned_cols=223 Identities=28% Similarity=0.494 Sum_probs=181.8
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++++|+++++.+.+.+++...+. ++.. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~------~~~~-~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYR------GGIR-I 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCccc------cCce-E
Confidence 69999999999999999999999999999 99999999999999999999999988888888864221 1111 2
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCCCc
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~ 170 (442)
.+.. +.. ..|++++++.+++++. .++|++++||++++.++.++++.|++.+.++++++.+.++
T Consensus 73 ~~~~--~~~-------~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 135 (223)
T cd06915 73 YYVI--EPE-------PLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD-- 135 (223)
T ss_pred EEEE--CCC-------CCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--
Confidence 1211 111 3699999999998884 3799999999998889999999998888888888877654
Q ss_pred CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCcccccc
Q 013483 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (442)
Q Consensus 171 ~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~ 250 (442)
...|+.+..|++++|..+.+|+.... +++.++|+|+|++++|..+ ... ..++..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~-~~~---~~~~~~~ 190 (223)
T cd06915 136 ASRYGNVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEI-PAD---AFSLEAD 190 (223)
T ss_pred CCcceeEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhC-Ccc---CCChHHH
Confidence 46788888888889999999876431 3578999999999998643 221 2344568
Q ss_pred hhhhcccccceEEEEecceeeecCChHHHHHHh
Q 013483 251 IIPASANEQFLKAYLFNDYWEDIGTIRSFFEAN 283 (442)
Q Consensus 251 ~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an 283 (442)
+++.+++.+++.+|+++++|.||+|++||.+|+
T Consensus 191 ~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 191 VLPALVKRGRLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HHHHHHhcCcEEEEecCCeEEecCCHHHHHhhC
Confidence 889888777999999999999999999999883
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-31 Score=242.39 Aligned_cols=217 Identities=33% Similarity=0.595 Sum_probs=179.6
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++++|++++..+++.+++..... ++.. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~------~~~~-i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSK------FGVN-I 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhh------cCce-E
Confidence 69999999999999999999999999999 99999999999999999999999988888888854321 1111 2
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCCCc
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~ 170 (442)
.++. +.. +.|++++++.++.++. .++|++++||++++.++.++++.|+++++++++++.+.+ +
T Consensus 73 ~~~~--~~~-------~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 135 (217)
T cd04181 73 EYVV--QEE-------PLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--D 135 (217)
T ss_pred EEEe--CCC-------CCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--C
Confidence 2222 221 2699999999998883 489999999999999999999999999999999988776 3
Q ss_pred CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCcccccc
Q 013483 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (442)
Q Consensus 171 ~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~ 250 (442)
+..|+++..|++++|..+.|||..+. +.++++|+|+|+++++ ++++........+..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~ 193 (217)
T cd04181 136 PSRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEIL-DYIPEILPRGEDELTD 193 (217)
T ss_pred CCcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHH-HhhhhcCCcccccHHH
Confidence 67899999988899999999987542 2578999999999988 4555433223455578
Q ss_pred hhhhcccccceEEEEecceeeecC
Q 013483 251 IIPASANEQFLKAYLFNDYWEDIG 274 (442)
Q Consensus 251 ~l~~~i~~~~i~~~~~~g~~~di~ 274 (442)
+++.++++.++++|+++|+|.|++
T Consensus 194 ~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 194 AIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHHhcCCEEEEEcCCEEecCC
Confidence 999999889999999999999986
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-31 Score=240.91 Aligned_cols=219 Identities=25% Similarity=0.477 Sum_probs=175.2
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
|||||||+|+||+|+|..+||+|+|++|+ |||+|++++|..+|+++++|++++..+.+.+++.+.. .++.. +
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~------~~~~~-i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGS------KFGVN-I 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCcc------ccCcc-E
Confidence 69999999999999999999999999999 9999999999999999999999998888888875422 12211 2
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCCCc
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~ 170 (442)
.++ .+.. +.|++++++.+.+.. .++|+|++||++++.++.++++.|++++.++++++.+...
T Consensus 73 ~~~--~~~~-------~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~-- 134 (220)
T cd06426 73 SYV--REDK-------PLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV-- 134 (220)
T ss_pred EEE--ECCC-------CCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 222 2211 368999998776554 2789999999999999999999999888888888876543
Q ss_pred CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCcccccc
Q 013483 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (442)
Q Consensus 171 ~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~ 250 (442)
...||++..|+ ++|..+.|||... .++++|+|+|+++++.. +++ .......+
T Consensus 135 ~~~~g~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~-i~~---~~~~~l~~ 186 (220)
T cd06426 135 QVPYGVVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDL-IPK---NEFFDMPD 186 (220)
T ss_pred CCcceEEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhh-cCC---CCCcCHHH
Confidence 45688888875 8999999987532 46789999999999854 332 11112357
Q ss_pred hhhhcccc-cceEEEEecceeeecCChHHHHHHh
Q 013483 251 IIPASANE-QFLKAYLFNDYWEDIGTIRSFFEAN 283 (442)
Q Consensus 251 ~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an 283 (442)
+++.+++. .++.+|+++++|.+++||++|.+||
T Consensus 187 ~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 187 LIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 88888875 5699999999999999999999986
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=235.99 Aligned_cols=205 Identities=18% Similarity=0.302 Sum_probs=159.9
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
++|||||||.|+||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++++..+++.+|+.+.+.+... +...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~--~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPK--SSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccc--cCcc
Confidence 5899999999999999999999999999999 999999999999999999999999999999999764322211 1001
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhh--hhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHc-----CCcEEE
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS-----GADITI 161 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~--~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~-----~~~~tl 161 (442)
.+.+.. +.. +.|++++++... ..+ .++|++++||++++.++.+++++|+++ ++++|+
T Consensus 78 ~i~~~~--~~~-------~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~ 141 (217)
T cd04197 78 IVIIIM--SED-------CRSLGDALRDLDAKGLI-------RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTM 141 (217)
T ss_pred eEEEEe--CCC-------cCccchHHHHHhhcccc-------CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEE
Confidence 133322 211 357888886542 233 268999999999999999999999884 788999
Q ss_pred EEeecCCCcC----CcccEEEEcCC-CceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 013483 162 SCLPMDDSRA----SDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (442)
Q Consensus 162 ~~~~~~~~~~----~~~g~v~~d~~-~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l 233 (442)
++.+.+++.. ..++++..|++ ++|..+.|||..+......+++.++..++.... ++++.++|+|+|++++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i-~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 142 VLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEI-RHDLLDCHIDICSPDVL 217 (217)
T ss_pred EEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEE-ECCceecCEEEeCCCCC
Confidence 8888765431 23567777765 899999999988765555677777777766554 67899999999998764
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=220.63 Aligned_cols=199 Identities=51% Similarity=0.824 Sum_probs=157.4
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
|||||||.||||+|+|..+||+|+|++|++|||+|+++++.++|+++++|++++..+++.+++.+...|+. +.....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDL--DRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccC--CCCCCCE
Confidence 69999999999999999999999999997689999999999999999999999999999999865332221 1111123
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCCCc
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~ 170 (442)
.++...+.. .++++.||+++++.++.++... ..++|+|++||++++.++.++++.|+++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~~---~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIERS---DPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHhC---CCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 444332210 1223589999999999988521 1368999999999999999999999988888887763
Q ss_pred CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-Cccccc
Q 013483 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-ANDFGS 249 (442)
Q Consensus 171 ~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~~~~~~ 249 (442)
+++|+|+|++++|..+++...+. ...+..
T Consensus 147 --------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 --------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred --------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 16699999999987777653222 334557
Q ss_pred chhhhcccccceEEEEecceeeec
Q 013483 250 EIIPASANEQFLKAYLFNDYWEDI 273 (442)
Q Consensus 250 ~~l~~~i~~~~i~~~~~~g~~~di 273 (442)
|+++.++++.++++|.++|+|.|+
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 899999998999999999999986
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=226.98 Aligned_cols=222 Identities=20% Similarity=0.278 Sum_probs=167.1
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++... .+ +
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~----~~-------~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY----PN-------I 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc----CC-------e
Confidence 69999999999999999999999999999 999999999999999999999999888888887531 11 3
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCCCc
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~ 170 (442)
.++...+.. +.|++++++.++.++. ++|++++||++++. ++++.|.++++++|+++.+.....
T Consensus 69 ~~~~~~~~~-------~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02523 69 KFVYNPDYA-------ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEW 131 (229)
T ss_pred EEEeCcchh-------hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccc
Confidence 344322221 2699999999998883 78999999998765 456777777888898887743333
Q ss_pred CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh---CC--CCc
Q 013483 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR---FP--TAN 245 (442)
Q Consensus 171 ~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~---~~--~~~ 245 (442)
...++....| ++++..+.+|+..+. ...+.++|+|+|+++++..+.+.. .+ ...
T Consensus 132 ~~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~ 190 (229)
T cd02523 132 EDEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVN 190 (229)
T ss_pred cccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhccccc
Confidence 3445443333 378888888876432 124679999999999876553321 11 123
Q ss_pred ccccchhhhcccc--cceEEEEecceeeecCChHHHHHHh
Q 013483 246 DFGSEIIPASANE--QFLKAYLFNDYWEDIGTIRSFFEAN 283 (442)
Q Consensus 246 ~~~~~~l~~~i~~--~~i~~~~~~g~~~di~t~~~~~~an 283 (442)
.+.+++++.++++ ..++.+.. ++|.||+++++|.+|+
T Consensus 191 ~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 191 LYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred ccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 4456888888873 34555555 8999999999999874
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-28 Score=223.50 Aligned_cols=222 Identities=18% Similarity=0.260 Sum_probs=165.3
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
+||||||+|+||+|+|..+||||+|++|+ |||+|+++.+.++|++++++++++.. ....++...+... ..+ +
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~-~~~-----~ 72 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLL-APN-----A 72 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHh-CCC-----C
Confidence 48999999999999999999999999999 99999999999999999999986432 1222222221100 001 2
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCCCc
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~ 170 (442)
.+...... ..|++++++.++..+.. .++|++++||++++.++.+++..|...+.+.++++...+
T Consensus 73 ~i~~~~~~--------~~g~~~~l~~a~~~l~~-----~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 136 (231)
T cd04183 73 TVVELDGE--------TLGAACTVLLAADLIDN-----DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS--- 136 (231)
T ss_pred EEEEeCCC--------CCcHHHHHHHHHhhcCC-----CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---
Confidence 22211111 36999999999988852 378999999999999998899888877777777665542
Q ss_pred CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHH-HHHHHHhhhC----CC-C
Q 013483 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE-ILLNLLRWRF----PT-A 244 (442)
Q Consensus 171 ~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~-~l~~~l~~~~----~~-~ 244 (442)
...|+.+..|++++|+.+.+|+.. +.+.++|+|+|+++ +|.+.++... .. .
T Consensus 137 ~~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~ 193 (231)
T cd04183 137 HPRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNG 193 (231)
T ss_pred CCCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccC
Confidence 457999999888999999887432 24579999999987 6555555421 11 1
Q ss_pred cccccchhhhcccc-cceEEEEe-cceeeecCChHHH
Q 013483 245 NDFGSEIIPASANE-QFLKAYLF-NDYWEDIGTIRSF 279 (442)
Q Consensus 245 ~~~~~~~l~~~i~~-~~i~~~~~-~g~~~di~t~~~~ 279 (442)
..+..++++.++++ .++.++.+ +++|.|++||++|
T Consensus 194 ~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 194 EFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred cEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 22346788888865 57999999 6999999999987
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=217.97 Aligned_cols=233 Identities=21% Similarity=0.328 Sum_probs=164.9
Q ss_pred eEEEEEeCCCCCCCccccc-CCCccceeecC-ccceehhhhhhhhhc-CCcEEEEEeccChh-hHHHHHHhhccCCCCcc
Q 013483 9 VAAVILGGGAGTRLYPLTK-QRAKPAVPIGG-AYRLIDVPMSNCINS-GINKVYILTQYNSA-SLNRHLARAYNYGSGVT 84 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~-~~pK~Llpi~g-~~pli~~~l~~l~~~-gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~ 84 (442)
|++||||||.||||+|+|. .+||+|+|++| + |||+++++++... ++++++|+++++.. .+.+++.+ . ..+
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~-~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~--~~~-- 74 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDK-SLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-G--LPE-- 74 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCC-cHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-c--CCC--
Confidence 6899999999999999996 69999999999 6 9999999999998 59999999987654 44445532 1 111
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeee--cCHHHHHHHHHH---cCCcE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFVQNHRQ---SGADI 159 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~--~~l~~~l~~~~~---~~~~~ 159 (442)
+.++. ++. +.||++++..+..++... ..++.++|++||+++. .+|.+.++.+.+ .+..+
T Consensus 75 -----~~ii~--ep~-------~~gTa~ai~~a~~~~~~~--~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~v 138 (274)
T cd02509 75 -----ENIIL--EPE-------GRNTAPAIALAALYLAKR--DPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLV 138 (274)
T ss_pred -----ceEEE--CCC-------CCCcHHHHHHHHHHHHhc--CCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEE
Confidence 22332 111 269999999998887521 1246899999999776 446667765443 56678
Q ss_pred EEEEeecCCCcCCcccEEEEcCCC-----ceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH
Q 013483 160 TISCLPMDDSRASDFGLMKINNEG-----RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (442)
Q Consensus 160 tl~~~~~~~~~~~~~g~v~~d~~~-----~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~ 234 (442)
|+.+.+... ...||++..+++. +|.+|.|||+...++.. .....+++++|+|+|+++.|.
T Consensus 139 t~gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------~~~g~~~wNsGiyi~~~~~l~ 203 (274)
T cd02509 139 TFGIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY-------------LESGNYLWNSGIFLFRAKTFL 203 (274)
T ss_pred EEEeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH-------------hhcCCeEEECceeeeeHHHHH
Confidence 888877543 5789999998653 89999999987543211 001236889999999999887
Q ss_pred HHHhhhCCCCc----------------ccccchhhh---------cc-cccceEEEEecceeeecCChHH
Q 013483 235 NLLRWRFPTAN----------------DFGSEIIPA---------SA-NEQFLKAYLFNDYWEDIGTIRS 278 (442)
Q Consensus 235 ~~l~~~~~~~~----------------~~~~~~l~~---------~i-~~~~i~~~~~~g~~~di~t~~~ 278 (442)
+.+++..|+.. .+..+.++. ++ +..++.+++.+..|.|+|++++
T Consensus 204 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 204 EELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 77776544310 000122222 11 2356888888889999999875
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=210.55 Aligned_cols=204 Identities=19% Similarity=0.332 Sum_probs=154.6
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|+|||||||.|+||.|+|...||+|+|++|+ |||+|++++|.++|+++++|++++..+++.+++.+.+.+ ..+.. .
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~--~~~~~-~ 76 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWS--SLSSK-M 76 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccc--cccCC-c
Confidence 6899999999999999999999999999999 999999999999999999999999999998888765311 00111 1
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHH--HHHcCCcEEEEEeec
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPM 166 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~--~~~~~~~~tl~~~~~ 166 (442)
.+.+....+.. +.|++++++.+++.+. ++|++++||++++.++.+++++ +...++++++.+...
T Consensus 77 ~v~~~~~~~~~-------~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~ 142 (216)
T cd02507 77 IVDVITSDLCE-------SAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLA 142 (216)
T ss_pred eEEEEEccCCC-------CCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEec
Confidence 13333322221 4799999999998884 6899999999999999999965 444455666555443
Q ss_pred CCC-------cCCcccEEEEcCC---CceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 013483 167 DDS-------RASDFGLMKINNE---GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (442)
Q Consensus 167 ~~~-------~~~~~g~v~~d~~---~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l 233 (442)
+.. ....++.+..|++ .++..+.+++... ....+.+++++.+++... ++++.++|+|+|+++++
T Consensus 143 ~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~l~~~~~~~i-~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 143 SPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDED--LELIIRKSLLSKHPNVTI-RTDLLDCHIYICSPDVL 216 (216)
T ss_pred cCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcC--cccccCHHHHhcCCCEEE-EcCcccccEEEecCcCC
Confidence 321 2466888888876 4666666666543 334467888888876654 66899999999998763
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=205.67 Aligned_cols=201 Identities=23% Similarity=0.365 Sum_probs=152.7
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccCh-hhHHHHHHhhccCCCCcccCC
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~ 87 (442)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++++|++++.. +.+.+++.+.. +... .
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~-~~~~----~ 74 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFP-LNLK----Q 74 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcc-cccC----c
Confidence 6899999999999999999999999999999 99999999999999999999998765 45666665421 1111 0
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecC
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~ 167 (442)
. ..+....+. .+.|++++|+.+...+. ++|+|++||.+++.++.++++.|+++++.+|+++.+..
T Consensus 75 ~-~~~~~~~~~-------~~~gt~~al~~~~~~i~-------~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~ 139 (214)
T cd04198 75 K-LDEVTIVLD-------EDMGTADSLRHIRKKIK-------KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPP 139 (214)
T ss_pred c-eeEEEecCC-------CCcChHHHHHHHHhhcC-------CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccC
Confidence 0 111111111 13799999999998763 68999999999999999999999999999999887654
Q ss_pred CC-----------cCCcccEEEEcC-CCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 013483 168 DS-----------RASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (442)
Q Consensus 168 ~~-----------~~~~~g~v~~d~-~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l 233 (442)
.. ....+.++..|+ ++++..+....+ ..+...++++++..+|+... ++++.++|+|+|+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~--~~~~~~~~~~~l~~~~~~~i-~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 140 VSSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEED--LDEDLELRKSLLKRHPRVTI-TTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CcccccCCcccccCCCCCceEEEcCCCCEEEEECCHHH--hhhhhhHHHHHHHhCCCEEE-EcCcccceEEEEEeeeC
Confidence 21 123456777765 457776654322 22455678888888876654 67899999999998763
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=199.09 Aligned_cols=221 Identities=24% Similarity=0.364 Sum_probs=167.2
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
|||||||.|+||++ .+||+|+|++|+ |||+|+++++.++++++++|++++..+++.+++.+ + + +
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~-~--------~---~ 64 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN-P--------N---V 64 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC-C--------C---c
Confidence 69999999999985 689999999999 99999999999999999999999887777777643 1 1 2
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-ee-ecCHHHHHHHHHHcCCcEEEEEeecCC
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLPMDD 168 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~~~~~~~~~tl~~~~~~~ 168 (442)
.++.... ..|++++++.++.+++. ..++|++++||. ++ ..++.++++.|++.++++++.+.+..+
T Consensus 65 ~~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02540 65 EFVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED 131 (229)
T ss_pred EEEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC
Confidence 2222111 25899999999998852 137899999999 33 456889999988777777777766553
Q ss_pred CcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---Cc
Q 013483 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---AN 245 (442)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~---~~ 245 (442)
+..|+.+..+++++|..+.+|+...... ...+++++|+|+|+++.|.++++..... ..
T Consensus 132 --p~~~~~~~~~~~~~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~ 192 (229)
T cd02540 132 --PTGYGRIIRDGNGKVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGE 192 (229)
T ss_pred --CCCccEEEEcCCCCEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCc
Confidence 5678888777778999999987532110 0125679999999998776677654322 22
Q ss_pred ccccchhhhcccc-cceEEEEecc--eeeecCChHHH
Q 013483 246 DFGSEIIPASANE-QFLKAYLFND--YWEDIGTIRSF 279 (442)
Q Consensus 246 ~~~~~~l~~~i~~-~~i~~~~~~g--~~~di~t~~~~ 279 (442)
.+..++++.+++. .+++++.++| .|+.+++|.++
T Consensus 193 ~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 193 YYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 3346888888864 6799999975 47888898764
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=216.23 Aligned_cols=241 Identities=20% Similarity=0.305 Sum_probs=163.3
Q ss_pred eEEEEEeCCCCCCCcccccC-CCccceeecC-ccceehhhhhhhhhcCCcEEEEEeccChh-hHHHHHHhhccCCCCccc
Q 013483 9 VAAVILGGGAGTRLYPLTKQ-RAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~-~pK~Llpi~g-~~pli~~~l~~l~~~gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~~ 85 (442)
|.+||||||.||||+|||.. +||+|+|+.| + |||+|+++.|..+++++++|+++.... .+.+.+.. + +
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~-~--~----- 71 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE-I--G----- 71 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH-c--C-----
Confidence 67999999999999999997 9999999987 6 999999999999999999999975543 33334322 1 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeec--CHHHHHHHH---HHcCCcEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM--DYMDFVQNH---RQSGADIT 160 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~--~l~~~l~~~---~~~~~~~t 160 (442)
.....++. ++. +.||++++..+..++.... ..++.++|++||+++.. .|.++++++ .++++.+|
T Consensus 72 -~~~~~~i~--Ep~-------~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvt 140 (468)
T TIGR01479 72 -KLASNIIL--EPV-------GRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVT 140 (468)
T ss_pred -CCcceEEe--ccc-------ccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEE
Confidence 00011221 111 3689999988776662100 01245999999987653 377887765 33455566
Q ss_pred EEEeecCCCcCCcccEEEEcC------CCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH
Q 013483 161 ISCLPMDDSRASDFGLMKINN------EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (442)
Q Consensus 161 l~~~~~~~~~~~~~g~v~~d~------~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~ 234 (442)
+...+.. ++..||++..++ .++|.+|.|||+...++.. .....+++|+|+|+|+++.|.
T Consensus 141 lgi~p~~--p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------l~~g~~~wNsGif~~~~~~ll 205 (468)
T TIGR01479 141 FGIVPTH--PETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAY-------------LESGDYYWNSGMFLFRASRYL 205 (468)
T ss_pred EEecCCC--CCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHH-------------HhcCCeEEEeeEEEEEHHHHH
Confidence 6665543 357899999873 2589999999986543211 111247899999999988766
Q ss_pred HHHhhhCCCC-----------------cccccchhh---------hccc-ccceEEEEecceeeecCChHHHHHHhh
Q 013483 235 NLLRWRFPTA-----------------NDFGSEIIP---------ASAN-EQFLKAYLFNDYWEDIGTIRSFFEANL 284 (442)
Q Consensus 235 ~~l~~~~~~~-----------------~~~~~~~l~---------~~i~-~~~i~~~~~~g~~~di~t~~~~~~an~ 284 (442)
+.+++..|+. ..+..+.++ .+++ ..++++++.+..|.|+|++++|.++..
T Consensus 206 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~~ 282 (468)
T TIGR01479 206 AELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEISD 282 (468)
T ss_pred HHHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhhc
Confidence 6665543320 001122333 2222 356888999999999999999999743
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-23 Score=191.62 Aligned_cols=235 Identities=19% Similarity=0.231 Sum_probs=157.2
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
|++.+||||+|.++||. ||+|+|++|+ |||+|+++.|.++++++++|++++ +.+.+++.+ + +
T Consensus 1 m~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~-~--~------ 62 (245)
T PRK05450 1 MKFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVEA-F--G------ 62 (245)
T ss_pred CceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH-c--C------
Confidence 36889999999999994 7999999999 999999999999999999998853 556666532 1 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~~~~tl~~~ 164 (442)
+.++...+.. +.|+++... +...+.. ...+.|++++||+ +++ ..+.++++.|+.++.++++++.
T Consensus 63 ---~~v~~~~~~~-------~~gt~~~~~-~~~~~~~---~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~ 128 (245)
T PRK05450 63 ---GEVVMTSPDH-------PSGTDRIAE-AAAKLGL---ADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAV 128 (245)
T ss_pred ---CEEEECCCcC-------CCchHHHHH-HHHhcCC---CCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeee
Confidence 1222222221 246655443 3333320 1136799999999 554 4478999988776666666665
Q ss_pred ecCC----CcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh
Q 013483 165 PMDD----SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (442)
Q Consensus 165 ~~~~----~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~ 240 (442)
+..+ .++..++++ .|++|+|+.|.+||....... . ......+++.++|+|+|+++++..+.+.
T Consensus 129 ~~~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~-~~~~~~~~~~~~Giy~~~~~~l~~~~~~- 195 (245)
T PRK05450 129 PIHDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------F-ADSAPTPVYRHIGIYAYRRGFLRRFVSL- 195 (245)
T ss_pred ecCCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------c-ccccCccccEEEEEEecCHHHHHHHHhC-
Confidence 5522 235556654 788899999999985331100 0 0000124788999999999998766542
Q ss_pred CCCCccccc--chhhhcccccceEEEEecc-eeeecCChHHHHHHhhhh
Q 013483 241 FPTANDFGS--EIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 241 ~~~~~~~~~--~~l~~~i~~~~i~~~~~~g-~~~di~t~~~~~~an~~~ 286 (442)
.+....... ++++.+.++.+++++..++ +|.|+|+|+||.+|++.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 196 PPSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CCCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 222111111 1233333567899999996 999999999999999765
|
|
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-23 Score=182.03 Aligned_cols=223 Identities=16% Similarity=0.243 Sum_probs=150.3
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEe-ccChhhHHHHHHhhccCCCCcc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-QYNSASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~-~~~~~~i~~~~~~~~~~~~~~~ 84 (442)
|..|+|||||||.|+||+| +.||||+.++|+ |+|+|+|++|.++|++++++|+ ++..+.+.+++.+ +++
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~-~~~----- 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKK-YPF----- 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhc-CCc-----
Confidence 4679999999999999998 899999999999 9999999999999999999999 7777777777654 212
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCH-HHHHHHHHHcCCcEEEEE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY-MDFVQNHRQSGADITISC 163 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l-~~~l~~~~~~~~~~tl~~ 163 (442)
..+++.+.... -.+++.+|+.++++++ ++|+++++|+++...+ +.+++. +.. ++.+
T Consensus 71 ----~~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~~e~l~~a----~~~-~li~ 127 (239)
T COG1213 71 ----NAKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSILERLLEA----PGE-GLIV 127 (239)
T ss_pred ----ceEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHHHHHHHhC----cCC-cEEE
Confidence 13444433322 1367999999999997 5799999999998885 444432 222 3333
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
...+......-.....+++|++..+..+.++. +-.++|++.|+++++....+.. ..
T Consensus 128 d~~~~~~~~~ea~kv~~e~G~i~~igK~l~e~-----------------------~~e~iGi~~l~~~i~~~~~~~~-~e 183 (239)
T COG1213 128 DRRPRYVGVEEATKVKDEGGRIVEIGKDLTEY-----------------------DGEDIGIFILSDSIFEDTYELL-VE 183 (239)
T ss_pred eccccccccCceeEEEecCCEEehhcCCcccc-----------------------cceeeeeEEechHHHHHHHHHH-hh
Confidence 33221111111122345789999987766533 2358899999999876443321 11
Q ss_pred CcccccchhhhcccccceEEEEe-----cceeeecCChHHHHHHhhhhhc
Q 013483 244 ANDFGSEIIPASANEQFLKAYLF-----NDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 244 ~~~~~~~~l~~~i~~~~i~~~~~-----~g~~~di~t~~~~~~an~~~l~ 288 (442)
.. ...+.+..+...+..-.. ...|.+++||||+.+|.+.+..
T Consensus 184 ~~---~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 184 RS---EYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred hh---hHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 11 112222222211111111 3579999999999999987753
|
|
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=186.05 Aligned_cols=227 Identities=19% Similarity=0.288 Sum_probs=153.7
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
++.+||||+|.|+||. ||+|+|++|+ |||+|++++|.++ ++++|+|++++ +.+.+++.+ + +
T Consensus 1 ~~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~-~--~------ 62 (239)
T cd02517 1 KVIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES-F--G------ 62 (239)
T ss_pred CEEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH-c--C------
Confidence 4689999999999996 7999999999 9999999999998 89999998864 566666642 1 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHc-CCcEEEEE
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQS-GADITISC 163 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~-~~~~tl~~ 163 (442)
+.++...+.. ..|+++ +..+...+.. ..+.|++++||+ ++. ..+..+++.|... +.++++++
T Consensus 63 ---~~~~~~~~~~-------~~gt~~-~~~~~~~~~~----~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~ 127 (239)
T cd02517 63 ---GKVVMTSPDH-------PSGTDR-IAEVAEKLDA----DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLA 127 (239)
T ss_pred ---CEEEEcCccc-------CchhHH-HHHHHHhcCC----CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 2222222211 247775 5555555541 126799999998 554 5588999888766 67788887
Q ss_pred eecCCCc----CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 013483 164 LPMDDSR----ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (442)
Q Consensus 164 ~~~~~~~----~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~ 239 (442)
.+.+++. ...|+ +..++++.|+.|.+++...... +.. ..+.+.++|+|+|++++|..+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~~--~~~~~~~~Giy~~~~~~~~~~~~~ 192 (239)
T cd02517 128 TPISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SSE--DFPYYKHIGIYAYRRDFLLRFAAL 192 (239)
T ss_pred EEcCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CCC--CCceeEEEEEEEECHHHHHHHHhC
Confidence 7764421 22333 5567778999888765321100 000 013578999999999999766442
Q ss_pred hCCCCcccccchhh--hcc-cccceEEEEecceeeecCChHHHHHHhh
Q 013483 240 RFPTANDFGSEIIP--ASA-NEQFLKAYLFNDYWEDIGTIRSFFEANL 284 (442)
Q Consensus 240 ~~~~~~~~~~~~l~--~~i-~~~~i~~~~~~g~~~di~t~~~~~~an~ 284 (442)
. .....+ .+.++ .++ ++.+++++..++.|.+||||++|.+|++
T Consensus 193 ~-~~~~~~-~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 193 P-PSPLEQ-IESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred C-Cchhhh-hhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 1 111111 12222 234 3556999999899999999999999975
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=175.32 Aligned_cols=225 Identities=17% Similarity=0.297 Sum_probs=149.8
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
++.|||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++++|++++ +.+.+++.+ + +
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~-~--~------ 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA-F--G------ 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH-c--C------
Confidence 5789999999999995 6999999999 9999999999998 89999998864 566666643 1 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe--eeecCHHHHHHHHHHcCC-cEEEEE
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGA-DITISC 163 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~~~~~~~-~~tl~~ 163 (442)
++++...+.. ..|++ .+..+...+. .+.|++++||. +....+.++++.|+..+. .+++++
T Consensus 64 ---~~v~~~~~~~-------~~g~~-~~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~ 126 (238)
T PRK13368 64 ---GKVVMTSDDH-------LSGTD-RLAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLC 126 (238)
T ss_pred ---CeEEecCccC-------CCccH-HHHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEE
Confidence 1122111111 23566 4555555553 37899999997 335568899998876543 455555
Q ss_pred eecCCC----cCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 013483 164 LPMDDS----RASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (442)
Q Consensus 164 ~~~~~~----~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~ 239 (442)
.+.+.. ++..+++ ..+++|+++.+.++|..... +.. ..+.+.++|+|+|++++|..+ +.
T Consensus 127 ~~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~--------------~~~-~~~~~~n~giy~~~~~~l~~~-~~ 189 (238)
T PRK13368 127 APISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRR--------------DGE-SARYLKHVGIYAFRRDVLQQF-SQ 189 (238)
T ss_pred EEcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCC--------------CCC-CCceeEEEEEEEeCHHHHHHH-Hc
Confidence 544321 1333443 44567899999875422110 000 013478999999999999653 32
Q ss_pred hCCCC-ccccc-chhhhcc-cccceEEEEecceeeecCChHHHHHHhhh
Q 013483 240 RFPTA-NDFGS-EIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (442)
Q Consensus 240 ~~~~~-~~~~~-~~l~~~i-~~~~i~~~~~~g~~~di~t~~~~~~an~~ 285 (442)
..... ..+.. +++ .++ .+.+++++..+++|+||++|+||..|+..
T Consensus 190 ~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 190 LPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 11111 11222 445 344 56679999988999999999999999764
|
|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-21 Score=190.46 Aligned_cols=244 Identities=18% Similarity=0.294 Sum_probs=160.2
Q ss_pred cceEEEEEeCCCCCCCcccccC-CCccceeecCccceehhhhhhhhhcCCcEEEEEeccChh-hHHHHHHhhccCCCCcc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQ-RAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVT 84 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~-~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~ 84 (442)
++|.+||||||.||||||+|.. +||+|+|++|..|||+++++++...++.+.+||++..+. .+.+++.. . ..
T Consensus 4 ~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~-~--~~--- 77 (478)
T PRK15460 4 SKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQ-L--NK--- 77 (478)
T ss_pred CceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHh-c--CC---
Confidence 3489999999999999999998 799999997644999999999999888887788876554 33334432 1 10
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC--HHHHHHHHH---HcCCcE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD--YMDFVQNHR---QSGADI 159 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~--l~~~l~~~~---~~~~~~ 159 (442)
.. ..+ ++.+. ..+|+.|+..+..++.......+.-++|+|+|+++... |.+.++... +.+.-+
T Consensus 78 ~~-~~i-i~EP~----------~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lv 145 (478)
T PRK15460 78 LT-ENI-ILEPA----------GRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLV 145 (478)
T ss_pred cc-ccE-EecCC----------CCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 00 001 12112 14788888777666643100013468899999976543 555554432 235555
Q ss_pred EEEEeecCCCcCCcccEEEEcCC---------CceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeH
Q 013483 160 TISCLPMDDSRASDFGLMKINNE---------GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKK 230 (442)
Q Consensus 160 tl~~~~~~~~~~~~~g~v~~d~~---------~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~ 230 (442)
|+...|... +..||++..++. .+|.+|.|||+...++.+. ....++||+|+|+|+.
T Consensus 146 t~GI~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl-------------~~G~y~WNsGiF~~~a 210 (478)
T PRK15460 146 TFGIVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYV-------------ASGEYYWNSGMFLFRA 210 (478)
T ss_pred EEecCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHH-------------HcCCEEEecceeheeH
Confidence 666655443 688999987642 2699999999987653321 1124799999999999
Q ss_pred HHHHHHHhhhCCCCc--------------c---cccchhh--------hcc--cccceEEEEecceeeecCChHHHHHHh
Q 013483 231 EILLNLLRWRFPTAN--------------D---FGSEIIP--------ASA--NEQFLKAYLFNDYWEDIGTIRSFFEAN 283 (442)
Q Consensus 231 ~~l~~~l~~~~~~~~--------------~---~~~~~l~--------~~i--~~~~i~~~~~~g~~~di~t~~~~~~an 283 (442)
+.+...+++..|... . +..+.++ +.+ +..++.+++.+-.|.|+|++.++.+..
T Consensus 211 ~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 211 GRYLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 977666665433200 0 0011111 111 124688888888899999999998874
|
|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-20 Score=170.38 Aligned_cols=243 Identities=21% Similarity=0.339 Sum_probs=162.5
Q ss_pred ceEEEEEeCCCCCCCcccccC-CCccceeecCccceehhhhhhhhh-cCCcEEEEEeccChh-hHHHHHHhhccCCCCcc
Q 013483 8 TVAAVILGGGAGTRLYPLTKQ-RAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSA-SLNRHLARAYNYGSGVT 84 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~-~pK~Llpi~g~~pli~~~l~~l~~-~gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~ 84 (442)
.|.+||||||.|||||||+.. .||++|++.+..+||+.+++++.. .+.+++++|++..+. .+++.+.+. ..+ .
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~---~~~-~ 76 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEI---DIE-N 76 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhh---hhc-c
Confidence 478999999999999999766 999999997633999999999988 678999999986654 444444321 000 0
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC--HHHHHHHHH---HcCCcE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD--YMDFVQNHR---QSGADI 159 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~--l~~~l~~~~---~~~~~~ 159 (442)
.. . + ++.+. | ..|+.|+..+.-.+.+. .++.-++|+++|+++... |.+.++... +++.-+
T Consensus 77 ~~-~-i-llEP~------g----RnTApAIA~aa~~~~~~--~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lV 141 (333)
T COG0836 77 AA-G-I-ILEPE------G----RNTAPAIALAALSATAE--GGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIV 141 (333)
T ss_pred cc-c-e-EeccC------C----CCcHHHHHHHHHHHHHh--CCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEE
Confidence 00 1 1 22222 2 35888887776555431 113359999999977643 666665433 345555
Q ss_pred EEEEeecCCCcCCcccEEEEcCC------CceEEEEeCCCcccccccccccccccccccccccc-cceeeeeEEEEeHHH
Q 013483 160 TISCLPMDDSRASDFGLMKINNE------GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEK-PYIASMGVYLFKKEI 232 (442)
Q Consensus 160 tl~~~~~~~~~~~~~g~v~~d~~------~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Giy~~~~~~ 232 (442)
|+...|.. ++..||++...+. .+|.+|.|||+...++. +..+ .++||+|+|+|+...
T Consensus 142 TfGI~Pt~--PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~--------------yv~sG~y~WNSGmF~Fra~~ 205 (333)
T COG0836 142 TFGIPPTR--PETGYGYIETGESIAENGVYKVDRFVEKPDLETAKK--------------YVESGEYLWNSGMFLFRASV 205 (333)
T ss_pred EEecCCCC--CccCcceeecCcccccCCceEeeeeeeCCCHHHHHH--------------HHHcCceEeeccceEEEHHH
Confidence 66665543 3689999987542 37999999999876532 2223 389999999999987
Q ss_pred HHHHHhhhCCCC--------ccc-----c---cc--------hhhhcc--cccceEEEEecceeeecCChHHHHHHhhh
Q 013483 233 LLNLLRWRFPTA--------NDF-----G---SE--------IIPASA--NEQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (442)
Q Consensus 233 l~~~l~~~~~~~--------~~~-----~---~~--------~l~~~i--~~~~i~~~~~~g~~~di~t~~~~~~an~~ 285 (442)
+.+.+++..|+. ... . .+ -+.+.+ +..++..++.+-.|.|+|++.++.+....
T Consensus 206 ~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~~ 284 (333)
T COG0836 206 FLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLDK 284 (333)
T ss_pred HHHHHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhhc
Confidence 766666544431 000 0 00 111111 23578888888889999999999888554
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-19 Score=151.90 Aligned_cols=219 Identities=14% Similarity=0.217 Sum_probs=147.1
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|.|||||||.||||.|+|..+||+|+.|.|+ |||+++|+.|.++||++|+||+|+..++ .+++++.+.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~-FeYLkdKy~---------- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQ-FEYLKDKYD---------- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHH-HHHHHHhcC----------
Confidence 6899999999999999999999999999999 9999999999999999999999998866 457776541
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCC
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~ 168 (442)
|.+++...... -....++..|++.+. +.-++.+|.++..++ ++.......-.....+.
T Consensus 69 -vtLvyN~kY~~-------yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~ 126 (231)
T COG4750 69 -VTLVYNPKYRE-------YNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSG 126 (231)
T ss_pred -eEEEeCchHHh-------hhhHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecC
Confidence 45554333211 257788999998885 567788998666553 11111111111111111
Q ss_pred CcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH---HHHhhhCC--C
Q 013483 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL---NLLRWRFP--T 243 (442)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~---~~l~~~~~--~ 243 (442)
. ...| .+..+.+++|+++.--.. .....+|+-.|+..... .+++...- .
T Consensus 127 ~-tnEw-~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e 180 (231)
T COG4750 127 K-TNEW-LLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLE 180 (231)
T ss_pred C-Ccee-EEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCch
Confidence 1 1223 455677899998864322 23567899999876543 34443221 1
Q ss_pred -CcccccchhhhcccccceEEEEec-ceeeecCChHHHHHHhhhhh
Q 013483 244 -ANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 244 -~~~~~~~~l~~~i~~~~i~~~~~~-g~~~di~t~~~~~~an~~~l 287 (442)
..-+.+++...-+++..++.-..+ +.-++++++++|.+....++
T Consensus 181 ~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 181 NRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred hhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhc
Confidence 112234455555555555555444 46789999999998877755
|
|
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-19 Score=155.19 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=122.9
Q ss_pred ccCCCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec------------eEEECC
Q 013483 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD------------TMMLGA 360 (442)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~------------~~~~~~ 360 (442)
.++|.+.+..+++|+|.|++.. ++.|+++++++ ++.| ..++||++++|.+++.|++ .+++|+
T Consensus 11 iIe~gA~ig~~V~IGpf~iIg~----~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~ 86 (260)
T COG1043 11 IIEPGAEIGEDVKIGPFCIIGP----NVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGD 86 (260)
T ss_pred eeCCCCCcCCCCEECceEEECC----CcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECC
Confidence 4455555555555555555532 67888888888 7777 5799999999999999976 789999
Q ss_pred ccccchhhhhhhhcCC-CcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCC
Q 013483 361 DFYETDAEVASLLAEG-RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKN 433 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~ 433 (442)
++.|||..+.++++.. +.-+.||+++.+- +++|+++|+||++|+++|...++.|+.|+|++.||..+.| ||++
T Consensus 87 ~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~ 166 (260)
T COG1043 87 NNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAH 166 (260)
T ss_pred CCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcch
Confidence 9999999999999965 3448999999996 9999999999999999999999999999999999999888 9999
Q ss_pred cEEcCCccC
Q 013483 434 SVITDGFVI 442 (442)
Q Consensus 434 ~~v~~~~~i 442 (442)
++||..|.|
T Consensus 167 amiGg~S~v 175 (260)
T COG1043 167 AMIGGLSAV 175 (260)
T ss_pred heecccccc
Confidence 999998864
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-17 Score=156.24 Aligned_cols=233 Identities=17% Similarity=0.201 Sum_probs=150.5
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
+++.+||||+|.++||. +|+|+|++|+ |||+|+++.+.+++..+.++ +....+++.+++.+ + +
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VV-V~~~~e~I~~~~~~-~--~------ 108 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIV-VATDDERIAECCRG-F--G------ 108 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEE-EECChHHHHHHHHH-c--C------
Confidence 57789999999999995 6999999999 99999999999876544433 34566777776643 1 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEE--E
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI--S 162 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl--~ 162 (442)
++++...+.. ..|++++ ..+.+.++. ..+.+++++||. ++..+ +.++++.+++. .++++ +
T Consensus 109 ---v~vi~~~~~~-------~~GT~~~-~~a~~~l~~----~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~ 172 (293)
T PLN02917 109 ---ADVIMTSESC-------RNGTERC-NEALKKLEK----KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTA 172 (293)
T ss_pred ---CEEEeCCccc-------CCchHHH-HHHHHhccC----CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEE
Confidence 1222111111 1477766 466666642 147899999999 55544 78888877654 33333 2
Q ss_pred EeecCCCcCCcccEEE--EcCCCceEEEEeCCC--cccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHh
Q 013483 163 CLPMDDSRASDFGLMK--INNEGRVLSFSEKPK--GKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (442)
Q Consensus 163 ~~~~~~~~~~~~g~v~--~d~~~~v~~i~ek~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~ 238 (442)
+.+...+++.+||.+. .|++|++..|..++- ..+.. +++ ....+.++|+|+|+.+.|. .+.
T Consensus 173 ~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~------------~~~--~~i~~~n~Giy~f~~~~L~-~l~ 237 (293)
T PLN02917 173 VTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGK------------VNP--QFPYLLHLGIQSYDAKFLK-IYP 237 (293)
T ss_pred eeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcc------------ccc--ccceEEEEEEEEeCHHHHH-HHH
Confidence 2333334478888775 677888775553322 11110 001 1225789999999999887 544
Q ss_pred hhCCC---CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhc
Q 013483 239 WRFPT---ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 239 ~~~~~---~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~ 288 (442)
+..++ .....+|+. .+-++.++.++..+.....+||++||.++++.+..
T Consensus 238 ~l~~~n~e~e~yLtdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 238 ELPPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred cCCCCcccchhccHHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 43222 122223333 33345678888777677799999999999998753
|
|
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.8e-17 Score=149.56 Aligned_cols=145 Identities=19% Similarity=0.202 Sum_probs=114.4
Q ss_pred CCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec------------eEEECCc
Q 013483 298 ATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD------------TMMLGAD 361 (442)
Q Consensus 298 ~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~------------~~~~~~~ 361 (442)
|.+.+.+++.++.++.| +.+.+. ++.||++|+|+ ++.| .++.||++|.|++++.|+. .+++|++
T Consensus 4 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~ 83 (255)
T PRK12461 4 PTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDR 83 (255)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCc
Confidence 44444444444444444 333332 57788888888 6677 5799999999999999975 6788998
Q ss_pred cccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcE
Q 013483 362 FYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSV 435 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~ 435 (442)
+.+++....+..+.....+.||++|.|. +++|+++|.||++|++++...+..+++|+++++||.+++| ||++++
T Consensus 84 ~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~ 163 (255)
T PRK12461 84 NVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAM 163 (255)
T ss_pred eEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcE
Confidence 8888876665554322238999999997 8999999999999999999999999999999999999887 999999
Q ss_pred EcCCccC
Q 013483 436 ITDGFVI 442 (442)
Q Consensus 436 v~~~~~i 442 (442)
|++||+|
T Consensus 164 Vg~gs~V 170 (255)
T PRK12461 164 MAGGSRI 170 (255)
T ss_pred ECCCceE
Confidence 9999874
|
|
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-17 Score=151.45 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=114.7
Q ss_pred cCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec------------eEEEC
Q 013483 296 YDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD------------TMMLG 359 (442)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~------------~~~~~ 359 (442)
++|.+.+.+++.++.++.| +.+.|. ++.||++|.|+ ++.| .+++||++|.|++++.|++ .+++|
T Consensus 5 I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG 84 (262)
T PRK05289 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIG 84 (262)
T ss_pred cCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEEC
Confidence 4455555555555555555 344443 57788888888 6666 5799999999999999976 68889
Q ss_pred Cccccchhhhhhhhc-CCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcC
Q 013483 360 ADFYETDAEVASLLA-EGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILK 432 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~-~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~ 432 (442)
+++.+++....+..+ .....+.||++|+|. +++|+++|.||+++++++...+.++.+|++++|||.+++| ||+
T Consensus 85 ~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~ 164 (262)
T PRK05289 85 DNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGA 164 (262)
T ss_pred CCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECC
Confidence 888887765554443 111227999999997 8999999999999999999999999999999999999887 999
Q ss_pred CcEEcCCccC
Q 013483 433 NSVITDGFVI 442 (442)
Q Consensus 433 ~~~v~~~~~i 442 (442)
+++|++||+|
T Consensus 165 ~~~Ig~gs~V 174 (262)
T PRK05289 165 HAMVGGMSGV 174 (262)
T ss_pred CCEEeeecce
Confidence 9999999875
|
|
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=139.85 Aligned_cols=219 Identities=17% Similarity=0.198 Sum_probs=140.1
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccCh-hhHHHHHHhhccCCCCc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS-ASLNRHLARAYNYGSGV 83 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~ 83 (442)
++++.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+..++ +++++|++++.. +.+.+.+.. ..
T Consensus 1 ~~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~-----~~- 70 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA-----KD- 70 (227)
T ss_pred CCceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc-----cC-
Confidence 357889999999999995 4579999999999 99999999999865 899999998665 333222211 00
Q ss_pred ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEE
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl 161 (442)
..+.++. .. .+.+++++.+...+.+ .+.++++.||. ++..+ +.++++.+...+ .++
T Consensus 71 ----~~~~~~~--~~---------~~~~~sv~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~ 128 (227)
T PRK00155 71 ----PKVTVVA--GG---------AERQDSVLNGLQALPD-----DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAI 128 (227)
T ss_pred ----CceEEeC--Cc---------chHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEE
Confidence 0122221 11 2478999999887743 46899999999 55544 788888876553 333
Q ss_pred EEeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 013483 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (442)
Q Consensus 162 ~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~ 241 (442)
.+.+..+ .+. ..+++|.+.++.+ ... ....-+.|.|+.+.|.++++...
T Consensus 129 ~~~~~~~----~~~--~v~~~g~~~~~~~---r~~----------------------~~~~~~p~~f~~~~l~~~~~~~~ 177 (227)
T PRK00155 129 LAVPVKD----TIK--RSDDGGGIVDTPD---RSG----------------------LWAAQTPQGFRIELLREALARAL 177 (227)
T ss_pred EEEeccc----cEE--EEcCCCceeecCC---hHH----------------------heeeeCCccchHHHHHHHHHHHH
Confidence 3434332 122 2244566655422 111 11233489999998887776532
Q ss_pred CCCcccccchhhhcc-cccceEEEEecceeeecCChHHHHHHhhhhhc
Q 013483 242 PTANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 242 ~~~~~~~~~~l~~~i-~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~ 288 (442)
.. ..+..|....+. .+.++..+..+..+.+|+|++||..|...+..
T Consensus 178 ~~-~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 178 AE-GKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred hc-CCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 11 111122222211 24567777766678899999999999877643
|
|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=138.48 Aligned_cols=211 Identities=18% Similarity=0.215 Sum_probs=137.9
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccCh-hhHHHHHHhhccCCCCcccCC
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~ 87 (442)
.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.++ ++++++|+++++. +.+.+.+....
T Consensus 1 ~aiIlAaG~s~R~~---~~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~---------- 66 (217)
T TIGR00453 1 SAVIPAAGRGTRFG---SGVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVARA---------- 66 (217)
T ss_pred CEEEEcCcccccCC---CCCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcCC----------
Confidence 37999999999997 3479999999999 9999999999998 7999999998654 33333332100
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEee
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~~ 165 (442)
.++++. +. .+..++++.+...+.+ .+.+++++||. ++..+ +.++++.+++. +.++.+.+
T Consensus 67 -~~~~~~--~~---------~~~~~sl~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~ 127 (217)
T TIGR00453 67 -VPKIVA--GG---------DTRQDSVRNGLKALKD-----AEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALP 127 (217)
T ss_pred -cEEEeC--CC---------chHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEe
Confidence 022221 11 1356788888877621 47899999999 55554 78888877653 33444444
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCc
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (442)
..+ ++...|++|.+..+.++... .... +.|.|+...|.+++........
T Consensus 128 ~~~------~v~~~~~~g~~~~~~~r~~~------------------------~~~~-~p~~f~~~~l~~~~~~~~~~~~ 176 (217)
T TIGR00453 128 VAD------TLKRVEADGFIVETVDREGL------------------------WAAQ-TPQAFRTELLKKALARAKEEGF 176 (217)
T ss_pred ccc------eEEEEcCCCceeecCChHHe------------------------EEEe-CCCcccHHHHHHHHHHHHhcCC
Confidence 332 34444566777777653211 2233 3799999988777654222111
Q ss_pred ccccchhhhccc-ccceEEEEecceeeecCChHHHHHHhhh
Q 013483 246 DFGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (442)
Q Consensus 246 ~~~~~~l~~~i~-~~~i~~~~~~g~~~di~t~~~~~~an~~ 285 (442)
.+ .|....+.. +.++..+..+...++|++++||..|...
T Consensus 177 ~~-~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 177 EI-TDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred CC-CcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 11 222222222 5677777777677899999999988753
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=143.05 Aligned_cols=142 Identities=19% Similarity=0.192 Sum_probs=99.2
Q ss_pred CCCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec------------eEEECCcc
Q 013483 297 DATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD------------TMMLGADF 362 (442)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~------------~~~~~~~~ 362 (442)
++++.+..++.|++.+.+.. ++.||++|+|+ .+.| .+++||++|.|++++.|++ .+++|+++
T Consensus 9 ~~~a~ig~~~~I~p~~~I~~----~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~ 84 (254)
T cd03351 9 DPGAKIGENVEIGPFCVIGP----NVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNN 84 (254)
T ss_pred CCCCEECCCCEECCCcEECC----CCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCC
Confidence 34444444444444444421 46666666666 4555 4677777777777777764 66677766
Q ss_pred ccchhhhhhhhcC-CCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcE
Q 013483 363 YETDAEVASLLAE-GRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSV 435 (442)
Q Consensus 363 ~~~~~~~~~~~~~-~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~ 435 (442)
.+.+......... +...+.||++|.|+ ++.|+++|.||+++.+.+...+..+++||++++|+.++++ ||++++
T Consensus 85 ~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~ 164 (254)
T cd03351 85 TIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAM 164 (254)
T ss_pred EECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCE
Confidence 6655332222111 10128999999997 7999999999999999999999899999999999999887 899999
Q ss_pred EcCCccC
Q 013483 436 ITDGFVI 442 (442)
Q Consensus 436 v~~~~~i 442 (442)
|+++|+|
T Consensus 165 Ig~~s~V 171 (254)
T cd03351 165 VGGGSGV 171 (254)
T ss_pred ECcCCEE
Confidence 9999875
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=134.45 Aligned_cols=226 Identities=16% Similarity=0.239 Sum_probs=140.1
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
+||||+|.|+||. +|+|++++|+ |||+|+++.+.++++++|+|++. .+.+.+.+.+ + + +
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~-~--g---------~ 60 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATD--DESVAQTCQK-F--G---------I 60 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHH-c--C---------C
Confidence 7999999999994 8999999999 99999999999988999999885 3445555432 1 1 1
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEeecCC
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDD 168 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~~~~~ 168 (442)
+++...+.. ..|+. .+..+...+.. ...+.++++.||. ++..+ +.++++.+++...+++.++.+..+
T Consensus 61 ~~v~~~~~~-------~~Gt~-r~~~~~~~l~~---~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d 129 (238)
T TIGR00466 61 EVCMTSKHH-------NSGTE-RLAEVVEKLAL---KDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHD 129 (238)
T ss_pred EEEEeCCCC-------CChhH-HHHHHHHHhCC---CCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 111111110 12433 33333333321 0136789999999 55554 788888876555666767666544
Q ss_pred CcC---CcccEEEEcCCCceEEEEeCCCccccccccccccccc--ccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 169 SRA---SDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLG--LSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 169 ~~~---~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
... .+...+..|.+|.+..|...+.+.. .+.+. ..|+. ..++...|+|.|++++|.++... .+.
T Consensus 130 ~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~-------R~~~~~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~-~~~ 198 (238)
T TIGR00466 130 AEEAFNPNAVKVVLDSQGYALYFSRSLIPFD-------RDFFAKRQTPVG---DNLLRHIGIYGYRAGFIEEYVAW-KPC 198 (238)
T ss_pred HHHccCCCceEEEeCCCCeEEEecCCCCCCC-------CCcccccccccc---cceeEEEEEEeCCHHHHHHHHhC-CCC
Confidence 111 1233444466777766655432211 00000 11111 12567899999999999876543 222
Q ss_pred C-cccc-cchhhhcccccceEEEEecce-eeecCChHHH
Q 013483 244 A-NDFG-SEIIPASANEQFLKAYLFNDY-WEDIGTIRSF 279 (442)
Q Consensus 244 ~-~~~~-~~~l~~~i~~~~i~~~~~~g~-~~di~t~~~~ 279 (442)
. +..+ -+.|..+-.+.+|.+...+.. -..++||+|+
T Consensus 199 ~le~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 199 VLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred cccccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1 1111 246777778899999888765 4699999997
|
|
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=139.96 Aligned_cols=147 Identities=24% Similarity=0.306 Sum_probs=77.9
Q ss_pred cchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCCCCc----cccCCCC-cccccCccCCCceecCCceeeeE
Q 013483 249 SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMF----SFYDATK-PIYTSRRNLPPSKIDDSKIVDSI 323 (442)
Q Consensus 249 ~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~~----~~~~~~~-~~~~~~~~~~~~~i~~~~i~~~~ 323 (442)
.|.++.+++.+ ++..+|||.|+ ++|+++|++++...... ....+.. .+...+.+.+++.+.+ ++.
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g----~v~ 100 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRD----QVI 100 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeC----CeE
Confidence 57788888755 78888999999 99999999999764210 0001111 1111222222222211 344
Q ss_pred EcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee---------eE
Q 013483 324 ISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE---------CI 392 (442)
Q Consensus 324 i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~---------~~ 392 (442)
||+++.|+ .+.+ .+++||++|.|++++.|+..+++|++ |.||.+|.|.+ ++
T Consensus 101 IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~------------------~~Ig~~~~I~~~~~~~~~~~v~ 162 (231)
T TIGR03532 101 IGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKN------------------VHIGAGAVLAGVIEPPSAKPVV 162 (231)
T ss_pred ECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCC------------------cEEcCCcEEccccccccCCCeE
Confidence 45555554 3333 24555555555555555544444444 55555555542 45
Q ss_pred eCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 393 IDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 393 ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
||++|.||+++++.. ..+|+++++|++|++|
T Consensus 163 IGd~v~IG~gsvI~~------g~~Ig~~~~IgagsvV 193 (231)
T TIGR03532 163 IEDNVLIGANAVILE------GVRVGKGAVVAAGAIV 193 (231)
T ss_pred ECCCcEECCCCEEcC------CCEECCCCEECCCCEE
Confidence 555555555555532 2345555555555444
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-15 Score=143.41 Aligned_cols=174 Identities=24% Similarity=0.210 Sum_probs=99.7
Q ss_pred eeeecCChHHHH-HHhhhhhcCCCCccccCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCC
Q 013483 269 YWEDIGTIRSFF-EANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIR 343 (442)
Q Consensus 269 ~~~di~t~~~~~-~an~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~ 343 (442)
.++-+++|..-+ ++...|.........++|++.+.+++.+++.+.+ +++.|. ++.||++|+|+ ++.| .+++||++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 466678887544 4444442222223456677777777666666666 344442 34555555554 3444 34555555
Q ss_pred cEECCCCEEeceEEECCccccchhhhhh-----------------------hhcCC-------------CcceEeCCCcE
Q 013483 344 SRINANVHLKDTMMLGADFYETDAEVAS-----------------------LLAEG-------------RVPVGIGENTK 387 (442)
Q Consensus 344 ~~i~~~~~i~~~~~~~~~~~~~~~~~~~-----------------------~~~~~-------------~~~~~i~~~~~ 387 (442)
|.|++++.|++.+++|+++.+....... ..+++ -..+.||+++.
T Consensus 146 ~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~ 225 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTK 225 (324)
T ss_pred ceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCcE
Confidence 5555544444333333333222210000 00000 00023333344
Q ss_pred ee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 388 IK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 388 i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
|. .+.|+++|+||+++.+.+...+.+..++|++++||.++.| ||++++|+++|+|
T Consensus 226 I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 226 IDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred EccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 43 3577788888888888888888888999999999999887 9999999999875
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=133.76 Aligned_cols=212 Identities=17% Similarity=0.248 Sum_probs=137.2
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
.+||||||.|+||++ ..||+|+|++|+ |||+|+++.+..++ +++++|++++........+.. +....
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~~~------- 69 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAK-YGLSK------- 69 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHh-cccCC-------
Confidence 589999999999984 379999999999 99999999999976 899999998766544433311 10110
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEeec
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
.+.++. .. .+...+++.++..++. ...+.++++.||+ ++... +.++++.+.+.+. .+...+.
T Consensus 70 ~~~~~~--~~---------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~ 133 (218)
T cd02516 70 VVKIVE--GG---------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPV 133 (218)
T ss_pred CeEEEC--Cc---------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEec
Confidence 122322 11 2567889999888741 0147899999999 55544 7888888765443 3333333
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCcc
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~ 246 (442)
.+ +....|++|.+.++.++... ....+. ++|+.+.|.+++....... .
T Consensus 134 ~~------~~~~~~~~g~~~~~~~r~~~------------------------~~~~~P-~~f~~~~~~~~~~~~~~~~-~ 181 (218)
T cd02516 134 TD------TIKRVDDDGVVVETLDREKL------------------------WAAQTP-QAFRLDLLLKAHRQASEEG-E 181 (218)
T ss_pred cc------cEEEecCCCceeecCChHHh------------------------hhhcCC-CcccHHHHHHHHHHHHhcC-C
Confidence 22 22335667888887763221 234566 9999999988876543221 1
Q ss_pred cccchhhhccc-ccceEEEEecceeeecCChHHHHH
Q 013483 247 FGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFE 281 (442)
Q Consensus 247 ~~~~~l~~~i~-~~~i~~~~~~g~~~di~t~~~~~~ 281 (442)
+..|....+.+ +.++..+..+..-+||+||+||..
T Consensus 182 ~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 182 EFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred CcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 11232222222 245666665555669999999964
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-15 Score=138.69 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=96.6
Q ss_pred CCCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec------------eEEECCcc
Q 013483 297 DATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD------------TMMLGADF 362 (442)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~------------~~~~~~~~ 362 (442)
++.+.+..++.+++.+.+.. ++.|++++.|+ .+.+ .+++||++|.|+++++|+. .+++|+++
T Consensus 8 ~~~a~Ig~~~~I~~~~~I~~----~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~ 83 (254)
T TIGR01852 8 EPGAEIGENVEIGPFCIVGP----GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNN 83 (254)
T ss_pred CCCCEECCCCEECCCCEECC----CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCC
Confidence 33444444444444444421 35555666655 4444 4677777777777777763 56677766
Q ss_pred ccchhhhhhhhcC-CCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcE
Q 013483 363 YETDAEVASLLAE-GRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSV 435 (442)
Q Consensus 363 ~~~~~~~~~~~~~-~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~ 435 (442)
.+.+....+...- +..++.||++|+|. ++.|+++|.||+++.+++...+....+||++++||.++.+ ||++++
T Consensus 84 ~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~ 163 (254)
T TIGR01852 84 TIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAM 163 (254)
T ss_pred EECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCE
Confidence 6655433322211 11138999999996 7888888999999999888888888899999999999887 889999
Q ss_pred EcCCccC
Q 013483 436 ITDGFVI 442 (442)
Q Consensus 436 v~~~~~i 442 (442)
|+++|+|
T Consensus 164 Ig~~s~V 170 (254)
T TIGR01852 164 IGGLSAV 170 (254)
T ss_pred EeeeeeE
Confidence 9998875
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-14 Score=131.63 Aligned_cols=218 Identities=16% Similarity=0.145 Sum_probs=136.6
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccChh-hHHHHHHhhccCCCCccc
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSA-SLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~~ 85 (442)
.+.+||||||.|+||+ ...||+|++++|+ |||+|+++.+..+ .+++++|+++.... .+.+.+.+ +.+
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-~~~------ 70 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ-LNV------ 70 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh-cCc------
Confidence 4689999999999997 4579999999999 9999999999876 48999999975442 23333332 211
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~ 163 (442)
....++++... .+..++++.+...+.. .+.++++.||. ++..+ +.++++.+...++. +.+
T Consensus 71 ~~~~~~~v~~g-----------~~r~~sv~~gl~~~~~-----~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~ 132 (230)
T PRK13385 71 ADQRVEVVKGG-----------TERQESVAAGLDRIGN-----EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICA 132 (230)
T ss_pred CCCceEEcCCC-----------chHHHHHHHHHHhccC-----CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEE
Confidence 00113333211 2455888888887753 35678889999 66655 68888877665433 222
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+..+ .+....++.+....+ .+ ..+..-+.|.|+.+.|.++.+.....
T Consensus 133 ~~~~d-------ti~~~~~~~~~~~i~----r~---------------------~~~~~qtpq~f~~~~l~~~~~~~~~~ 180 (230)
T PRK13385 133 VEVKD-------TVKRVKDKQVIETVD----RN---------------------ELWQGQTPQAFELKILQKAHRLASEQ 180 (230)
T ss_pred Eeccc-------eEEEEcCCeeEeccC----HH---------------------HHhhhcCCceeeHHHHHHHHHHHHhc
Confidence 22221 122212344433322 10 12234468999988887766532111
Q ss_pred Ccccccchhhhcc-cccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 244 ANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 244 ~~~~~~~~l~~~i-~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
...+ .|....+. .+.++..++-+.....|++|+|+..|...+.
T Consensus 181 ~~~~-td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 181 QFLG-TDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred CCCc-CcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 1222 33222222 3567888877778899999999999987764
|
|
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-14 Score=139.36 Aligned_cols=208 Identities=15% Similarity=0.181 Sum_probs=135.5
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 84 (442)
|+++.+||||||.|+||. ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++....+.+.+.. ...
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~------~~~ 72 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALP------EIK 72 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcc------cCC
Confidence 567899999999999995 5689999999999 99999999999987 699999998665443333211 101
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS 162 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~ 162 (442)
.+.++. .. .+..++++.++..++ .+.+++..||. +++.+ +.++++..+. .++++.
T Consensus 73 ----~v~~v~--gG---------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~ 129 (378)
T PRK09382 73 ----FVTLVT--GG---------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLP 129 (378)
T ss_pred ----eEEEeC--CC---------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEE
Confidence 122221 11 246788999988875 37899999998 55555 6777776543 356677
Q ss_pred EeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 013483 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (442)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~ 242 (442)
..+..+ ...|+....|. ..+..+ ++|... +.+.+....+
T Consensus 130 ~~pv~D--tik~~~~tldR-~~l~~~-QTPQ~f---------------------------------~~~~l~~a~~---- 168 (378)
T PRK09382 130 ALPVAD--TLKRANETVDR-EGLKLI-QTPQLS---------------------------------RTKTLKAAAD---- 168 (378)
T ss_pred EEEecc--CcEEeeeEcCc-ccEEEE-ECCCCC---------------------------------CHHHHHHHHh----
Confidence 767655 34454333332 233333 444322 1222222211
Q ss_pred CCcccccchhhhccc-ccceEEEEecceeeecCChHHHHHHhhhhhc
Q 013483 243 TANDFGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 243 ~~~~~~~~~l~~~i~-~~~i~~~~~~g~~~di~t~~~~~~an~~~l~ 288 (442)
....+ .|..+.+.. +.++..++.+..|.+|++|+||..|+..+..
T Consensus 169 ~~~~~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 169 GRGDF-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCCCc-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 11122 344444333 5688888888999999999999999987653
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=130.68 Aligned_cols=145 Identities=23% Similarity=0.279 Sum_probs=104.0
Q ss_pred ccCCCCcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhh--hh
Q 013483 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE--VA 370 (442)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~--~~ 370 (442)
.+++.+.+.+.+.+++++.+ +++.|.++.|+++|.|+ .+.+.+++||+++.|++++.|++.+.++++..+.... ..
T Consensus 23 ~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~ 102 (193)
T cd03353 23 VIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKK 102 (193)
T ss_pred EECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEec
Confidence 34455555666666777777 56777777888888888 6777788888888888777777666666543322210 01
Q ss_pred hhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCccc-ceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 371 SLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 371 ~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+...++ +.|++.+++++|+||++|.||+++.+.+...... ..++|+++|||.++++ ||++++|++||+|
T Consensus 103 s~ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V 177 (193)
T cd03353 103 STIGEG---SKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 177 (193)
T ss_pred ceEcCC---CEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEE
Confidence 222333 5666777778899999999999999988766554 3589999999999876 9999999999875
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.8e-15 Score=129.85 Aligned_cols=124 Identities=23% Similarity=0.255 Sum_probs=93.6
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|.+||||||+|+||++ .||+|+|++|+ |||+|+++++..++++++++++++..+..+.++.+..
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 7899999999999974 79999999999 9999999999998999999999887777777775321
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCee-ee-cCHHHHHHHHHHcCCcEEEEEe
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YR-MDYMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i-~~-~~l~~~l~~~~~~~~~~tl~~~ 164 (442)
..+.. .. ..|...++..++..+.. .++|++++||+. .. ..+.++++.+...+.....++.
T Consensus 65 -~~~~~--~~--------g~G~~~~l~~al~~~~~-----~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~ 126 (183)
T TIGR00454 65 -KDYKN--AS--------GKGYIEDLNECIGELYF-----SEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMI 126 (183)
T ss_pred -cEEEe--cC--------CCCHHHHHHHHhhcccC-----CCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEe
Confidence 11111 11 14777888888765432 379999999993 33 4478899888766555444443
|
At this time this gene appears to be present only in Archea |
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.6e-15 Score=127.91 Aligned_cols=120 Identities=25% Similarity=0.389 Sum_probs=91.9
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
|||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++ +++.+++.+. + +
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~-----~-------~ 60 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY-----G-------I 60 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT-----T-------S
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc-----C-------c
Confidence 7999999999997 49999999999 999999999999999999999986 4455544221 1 2
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEE
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~ 163 (442)
+++..... ..|++.++..+...+.. .++|++++||+ +++.+ +.++++.+.+++.++++..
T Consensus 61 ~~v~~~~~--------~~G~~~sl~~a~~~~~~-----~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 61 KVVVDPEP--------GQGPLASLLAALSQLPS-----SEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp EEEE-STS--------SCSHHHHHHHHHHTSTT-----SSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred eEEEeccc--------cCChHHHHHHHHHhccc-----CCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 23322211 15999999999988832 58999999999 44544 7889988887777765544
|
... |
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-14 Score=124.83 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=99.1
Q ss_pred CCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEEe-eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhh
Q 013483 298 ATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLL 373 (442)
Q Consensus 298 ~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 373 (442)
+...+.+.+.+++.+.+ +++.+. +++|+++|.|+ .+.+. +++||++|.|++++.|.++++..+
T Consensus 10 ~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~------------- 76 (163)
T cd05636 10 EGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG------------- 76 (163)
T ss_pred CCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC-------------
Confidence 34455555666666666 455554 58899999998 77774 799999999999999988766544
Q ss_pred cCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCc------------------ccceeeCCCeEEccCcEE-----E
Q 013483 374 AEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGI------------------QEADRSAEGFYIRSGVTV-----I 430 (442)
Q Consensus 374 ~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~------------------~~~~~~~~~~~i~~~~~v-----i 430 (442)
+.|++++.+.+|+|++++.|++++++.+...- .....++++++||.++.+ |
T Consensus 77 ------~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~i 150 (163)
T cd05636 77 ------TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKI 150 (163)
T ss_pred ------CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEE
Confidence 89999999999999999999999999763210 123589999999999876 8
Q ss_pred cCCcEEcCCccC
Q 013483 431 LKNSVITDGFVI 442 (442)
Q Consensus 431 ~~~~~v~~~~~i 442 (442)
|++++|++|++|
T Consensus 151 g~~~~i~agsvV 162 (163)
T cd05636 151 GPGSWVYPGCVV 162 (163)
T ss_pred CCCCEECCCcEe
Confidence 999999999875
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=139.95 Aligned_cols=63 Identities=29% Similarity=0.283 Sum_probs=52.7
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+.||++|.|. .+.|+++|+||+++.+.....+....++|++++||.++.| ||++++|+++|+|
T Consensus 226 t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v 294 (343)
T PRK00892 226 TVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGV 294 (343)
T ss_pred ceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCee
Confidence 4566666666 4778888888888888888888888999999999999887 9999999999875
|
|
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-14 Score=131.93 Aligned_cols=51 Identities=27% Similarity=0.277 Sum_probs=35.5
Q ss_pred eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCcc
Q 013483 391 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFV 441 (442)
Q Consensus 391 ~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~ 441 (442)
+.||+||+||.+|.+.+..++.+..+||++|.||..+.+ ||++++|++++.
T Consensus 237 vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~ 292 (338)
T COG1044 237 VQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSG 292 (338)
T ss_pred eEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEecccc
Confidence 556666666667766666677777777777777776666 777777777664
|
|
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-13 Score=126.31 Aligned_cols=218 Identities=19% Similarity=0.234 Sum_probs=134.2
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
++.+||||+|.|+||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++ ..+.+.+++.+ + + ..
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~--~~~~i~~~~~~-~--~--~~-- 64 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVST--DDEEIAEVARK-Y--G--AE-- 64 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEEC--CcHHHHHHHHH-h--C--CC--
Confidence 4679999999999995 5999999999 99999999999987 78887766 34455555432 1 1 00
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~~~~tl~~~ 164 (442)
+.+....... .+ ..|+.++++.+++.++.. ....+.|+++.||. ++. ..+.++++.+...+.+.++.+.
T Consensus 65 ---~~~~~~~~~~--~~---~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~ 135 (223)
T cd02513 65 ---VPFLRPAELA--TD---TASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVT 135 (223)
T ss_pred ---ceeeCChHHC--CC---CCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 1111111000 00 247889999988877520 00136899999999 444 4588999998877777777776
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~ 244 (442)
+..+ ...++... ++++ ...+...+... ..+ ++. ...+..+.|+|+++++.+.+..
T Consensus 136 ~~~~--~~~~~~~~-~~~~-~~~~~~~~~~~-~~~------------q~~-~~~~~~n~~~y~~~~~~~~~~~------- 190 (223)
T cd02513 136 EFHR--FPWRALGL-DDNG-LEPVNYPEDKR-TRR------------QDL-PPAYHENGAIYIAKREALLESN------- 190 (223)
T ss_pred ecCc--CcHHheee-ccCC-ceeccCccccc-CCc------------CCC-hhHeeECCEEEEEEHHHHHhcC-------
Confidence 6543 22233322 2233 22222111100 000 111 1225568899999999764310
Q ss_pred cccccchhhhcccccceEEEEecc-eeeecCChHHHHHHhhh
Q 013483 245 NDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLA 285 (442)
Q Consensus 245 ~~~~~~~l~~~i~~~~i~~~~~~g-~~~di~t~~~~~~an~~ 285 (442)
. + -+.++..+..+. ..+||++++||..|...
T Consensus 191 ~-~---------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 191 S-F---------FGGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred C-c---------cCCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 0 0 145666666654 57999999999988653
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.9e-14 Score=131.66 Aligned_cols=62 Identities=31% Similarity=0.321 Sum_probs=49.3
Q ss_pred eEeCCCcEee-eeEeCCC----cEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCcc
Q 013483 380 VGIGENTKIK-ECIIDKN----ARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFV 441 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~----~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~ 441 (442)
|+||+++.|+ |+.|++. ++||++|.|-|...+..+++||+++.|..++.+ ||+++++|..+.
T Consensus 203 V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vg 274 (338)
T COG1044 203 VIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVG 274 (338)
T ss_pred EEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECccee
Confidence 7888888888 7888888 888888888888887777788877777666554 888888887654
|
|
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=122.41 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=86.4
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++++|++++...++.+.+... ++ +
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~--------~~---v 64 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANH--------SN---I 64 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccC--------CC---e
Confidence 7999999999997 59999999999 999999999999899999999998765544443211 11 3
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeec-CHHHHHHHHHHcCCcE
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADI 159 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~~~~~~~~~ 159 (442)
.++..... ..|+..+++.++....+ .+.|++++||+ ++.. .+.++++.+......+
T Consensus 65 ~~v~~~~~--------~~g~~~si~~~l~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 65 TLVHNPQY--------AEGQSSSIKLGLELPVQ-----SDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred EEEECcCh--------hcCHHHHHHHHhcCCCC-----CCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 33322111 14888999888762111 47899999999 4443 4778888776554433
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.4e-13 Score=118.76 Aligned_cols=113 Identities=21% Similarity=0.263 Sum_probs=81.0
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|.+|.+||||||.|+||. ..||+|+|++|+ |||+|+++.+. .++++++|+++...+.+ .. . +
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~-~--~----- 62 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----AA-F--G----- 62 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----Hh-c--C-----
Confidence 467899999999999995 269999999999 99999999998 67999999887543221 11 1 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHH
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~ 153 (442)
+.++...... ..|+..+++.++...+ .+.+++++||+ +++.+ +.++++.+.
T Consensus 63 ----~~~v~~~~~~-------~~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 63 ----LPVIPDSLAD-------FPGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred ----CcEEeCCCCC-------CCCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 1122111110 1478889988887654 47899999999 55555 667776543
|
|
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.6e-13 Score=122.76 Aligned_cols=218 Identities=12% Similarity=0.110 Sum_probs=130.8
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccChhhHHHHHHhhccCCCCcc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 84 (442)
++.+.+||||||.|+||+ ...||+|++++|+ |+|+|+++.+... ++++|+||+++......+.....+ .
T Consensus 22 ~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~--~---- 91 (252)
T PLN02728 22 EKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI--D---- 91 (252)
T ss_pred cCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc--C----
Confidence 445789999999999997 4579999999999 9999999999984 899999999866443332221111 1
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCC--e-eeecC-HHHHHHHHHHcCCcEE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGD--H-LYRMD-YMDFVQNHRQSGADIT 160 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD--~-i~~~~-l~~~l~~~~~~~~~~t 160 (442)
.. +.+. ... .+..++++.++..+.. +..+|+.+| . ++... +.++++.....++ .
T Consensus 92 --~~-i~~v--~gg---------~~r~~SV~~gl~~l~~------~~~~VlihDaarP~vs~~~i~~li~~~~~~ga--~ 149 (252)
T PLN02728 92 --VP-LKFA--LPG---------KERQDSVFNGLQEVDA------NSELVCIHDSARPLVTSADIEKVLKDAAVHGA--A 149 (252)
T ss_pred --Cc-eEEc--CCC---------CchHHHHHHHHHhccC------CCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe--E
Confidence 01 2221 111 2456788888877752 334455566 4 55544 5788877665543 4
Q ss_pred EEEeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh
Q 013483 161 ISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (442)
Q Consensus 161 l~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~ 240 (442)
+...+..+. +...++++.+.. .++... .+.--.-..|+.+.|.+..+..
T Consensus 150 i~~~~~~dt------ik~v~~~~~v~~---t~~R~~----------------------l~~~QTPQ~F~~~~l~~a~~~~ 198 (252)
T PLN02728 150 VLGVPVKAT------IKEANSDSFVVK---TLDRKR----------------------LWEMQTPQVIKPELLRRGFELV 198 (252)
T ss_pred EEeecchhh------EEEecCCCceee---ccChHH----------------------eEEEeCCccchHHHHHHHHHHH
Confidence 455444331 122334454433 222111 1223344567777776666553
Q ss_pred CCCCcccccchhhhcc-cccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 241 FPTANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 241 ~~~~~~~~~~~l~~~i-~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
......+ .|-...+. .+.++..++-+..-+-|.+|+|+..|...+.
T Consensus 199 ~~~~~~~-TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~ 245 (252)
T PLN02728 199 EREGLEV-TDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILN 245 (252)
T ss_pred HhcCCCc-CcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHh
Confidence 3222112 22222222 2456776655556788999999999987664
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-13 Score=122.05 Aligned_cols=145 Identities=24% Similarity=0.243 Sum_probs=95.2
Q ss_pred cCCCCcccccCccCCCcee-cCCce-eeeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec-----------------
Q 013483 296 YDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD----------------- 354 (442)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i-~~~~i-~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~----------------- 354 (442)
+++.+.+..++.+++++.+ +++.+ .++.||++|.|+ ++.+ .+++||++|.|+++++|+.
T Consensus 10 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~ 89 (205)
T cd03352 10 IGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQ 89 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcCC
Confidence 3445555556666666666 34555 357777777777 5566 3477777777777777642
Q ss_pred --eEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE--
Q 013483 355 --TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-- 429 (442)
Q Consensus 355 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-- 429 (442)
.++++++..+............. +.||+++.|+ ++.|++++.||+++.+.+...+....+|+++++||+++.+
T Consensus 90 ~~~v~Ig~~~~Ig~~~~i~~~~~~~--~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~ 167 (205)
T cd03352 90 LGGVIIGDDVEIGANTTIDRGALGD--TVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAG 167 (205)
T ss_pred cceEEECCCEEECCCCEEeccccCC--eEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeC
Confidence 34444443222211111111111 5677777776 5778888888888888888888788899999999999887
Q ss_pred ---EcCCcEEcCCccC
Q 013483 430 ---ILKNSVITDGFVI 442 (442)
Q Consensus 430 ---i~~~~~v~~~~~i 442 (442)
||++++|++++++
T Consensus 168 ~~~ig~~~~i~~~s~v 183 (205)
T cd03352 168 HLTIGDGVVIGAGSGV 183 (205)
T ss_pred CcEECCCCEEcCCCEE
Confidence 8999999998864
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-13 Score=121.09 Aligned_cols=122 Identities=22% Similarity=0.357 Sum_probs=89.7
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
+.+||||||.|+||++ ||+|+|+.|+ |||+|+++.+...++++++|++++....+.+++.. ++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~---------~~-- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG---------LP-- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC---------CC--
Confidence 4689999999999984 9999999999 99999999999999999999998766554443321 11
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEE
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADIT 160 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~t 160 (442)
+.++..... ..|+..+++.++..+.. ..+.+++++||+ +++.. +.++++.+...+..++
T Consensus 64 -~~~~~~~~~--------~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v 124 (186)
T cd04182 64 -VVVVINPDW--------EEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAGIV 124 (186)
T ss_pred -eEEEeCCCh--------hhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEE
Confidence 222221211 14899999999887752 147899999999 45444 6788887765555433
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.4e-12 Score=113.12 Aligned_cols=115 Identities=24% Similarity=0.303 Sum_probs=82.3
Q ss_pred ccccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCc
Q 013483 4 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (442)
Q Consensus 4 ~~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~ 83 (442)
...+++.+||||||+|+||+ .||+|++++|+ |||+|+++.+... +++++|++++. +... .+. ..+
T Consensus 3 ~~~~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~~-~~~~-~~~-----~~~- 67 (200)
T PRK02726 3 TVKNNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPWP-ERYQ-SLL-----PPG- 67 (200)
T ss_pred CcCCCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCCH-HHHH-hhc-----cCC-
Confidence 34567899999999999997 48999999999 9999999999764 68888887532 2221 111 001
Q ss_pred ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHH
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~ 153 (442)
+.++..... ..|+..+++.++..++ .+.++|++||+ ++..+ +..+++.+.
T Consensus 68 ------~~~i~~~~~--------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 68 ------CHWLREPPP--------SQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred ------CeEecCCCC--------CCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 223322221 1589999999998876 37899999999 55555 566776543
|
|
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-12 Score=114.71 Aligned_cols=109 Identities=17% Similarity=0.342 Sum_probs=76.6
Q ss_pred CCcccccceEEEEEeCCCCCCCcccccCCCccceeecC-ccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccC
Q 013483 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNY 79 (442)
Q Consensus 1 ~~~~~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g-~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~ 79 (442)
|.+.+.+++.+||||||+|+||+ .||+|+|+.| + |+|+|+++.+... +++++|++++ +.. . +
T Consensus 1 ~~~~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~~----~----~ 63 (196)
T PRK00560 1 MKNPMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KKF----E----F 63 (196)
T ss_pred CCCccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hhc----c----c
Confidence 55667788999999999999996 6999999999 9 9999999999877 8899888864 111 0 0
Q ss_pred CCCcccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecCH-HHH
Q 013483 80 GSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDY-MDF 148 (442)
Q Consensus 80 ~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~l-~~~ 148 (442)
. ++++...+.. ..|+..++..+....+ .+.++|++||+ ++..++ .++
T Consensus 64 ~---------~~~v~d~~~~-------~~gpl~gi~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 64 N---------APFLLEKESD-------LFSPLFGIINAFLTLQ------TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred C---------CcEEecCCCC-------CCCcHHHHHHHHHhcC------CCeEEEEecCcCcCCHHHHHHH
Confidence 0 1122211110 1366666665554444 47999999999 556554 444
|
|
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.9e-12 Score=108.77 Aligned_cols=121 Identities=21% Similarity=0.320 Sum_probs=92.1
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
+..+.+||||||+|+||. .+|.|+|+.|+ |+++++++.+.+++.+++++|+++...+....+.. ..+
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~----~~~--- 69 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALLA----QLG--- 69 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc----cCC---
Confidence 457889999999999999 89999999999 99999999999999999999999873332222211 111
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCee-e-ecCHHHHHHHHHHc
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-Y-RMDYMDFVQNHRQS 155 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i-~-~~~l~~~l~~~~~~ 155 (442)
+.++.+.+. ..|.+.+++.+....... .+.++++.||+- + ...+..+++.++.+
T Consensus 70 ----~~~v~npd~--------~~Gls~Sl~ag~~a~~~~----~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 70 ----VTVVVNPDY--------AQGLSTSLKAGLRAADAE----GDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred ----eEEEeCcch--------hhhHhHHHHHHHHhcccC----CCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 344443332 269999999999888741 258999999993 3 34578888877655
|
|
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.9e-12 Score=100.70 Aligned_cols=101 Identities=29% Similarity=0.447 Sum_probs=83.2
Q ss_pred cee-cCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee
Q 013483 312 SKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE 390 (442)
Q Consensus 312 ~~i-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~ 390 (442)
+.+ +++.+.+++||++|.|+.+.+.+|++++++.|++++.|.+++++++ +.||++|.+.+
T Consensus 2 ~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~~ 62 (104)
T cd04651 2 PYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIRR 62 (104)
T ss_pred ceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEEe
Confidence 445 5677788999999999978889999999999999999999988776 89999999999
Q ss_pred eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcE
Q 013483 391 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSV 435 (442)
Q Consensus 391 ~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~ 435 (442)
|+||++|.|++++++.+...- .-..+.+...+.++|++++.
T Consensus 63 siig~~~~Ig~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~ 103 (104)
T cd04651 63 AIIDKNVVIPDGVVIGGDPEE----DRARFYVTEDGIVVVGKGMV 103 (104)
T ss_pred EEECCCCEECCCCEECCCccc----ccccceEcCCeEEEEecccC
Confidence 999999999999999874221 11245555677777877764
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.3e-12 Score=117.06 Aligned_cols=137 Identities=12% Similarity=0.138 Sum_probs=97.7
Q ss_pred CCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEEe-------------eeEEcCCcEECCCCEEec------
Q 013483 297 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLKD------ 354 (442)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~-------------~~~ig~~~~i~~~~~i~~------ 354 (442)
.+...+.+.+.+++.+.+ +++.+. ++.||++|+|+ ++.+. +++||++|.|++++.|..
T Consensus 20 ~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~ 99 (254)
T TIGR01852 20 GPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGG 99 (254)
T ss_pred CCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCC
Confidence 344444555555555555 445453 58888888888 66664 588999999999999874
Q ss_pred -eEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---
Q 013483 355 -TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV--- 429 (442)
Q Consensus 355 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v--- 429 (442)
.+++|+++++.+.... ..+ +.||++|+|. ++.|+++++||+++.+++...+..+.+|+++++|+++++|
T Consensus 100 ~~~~IG~~~~I~~~~~I---~~~---~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~ 173 (254)
T TIGR01852 100 GVTRIGNNNLLMAYSHI---AHD---CVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKD 173 (254)
T ss_pred CcEEECCCCEECCCCEE---ccC---CEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeEeee
Confidence 4566766544332111 111 6777777776 6888888888888888888888889999999999999888
Q ss_pred EcCCcEEcCC
Q 013483 430 ILKNSVITDG 439 (442)
Q Consensus 430 i~~~~~v~~~ 439 (442)
|++++++.++
T Consensus 174 i~~~~~~~G~ 183 (254)
T TIGR01852 174 VPPYGLVEGN 183 (254)
T ss_pred cCCCcEEecC
Confidence 8888877654
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.5e-11 Score=107.78 Aligned_cols=215 Identities=20% Similarity=0.238 Sum_probs=136.9
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcccCCce
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 89 (442)
|||||+|.++||. +|.++|++|+ ||+.|+++.+.+++ +++|+|.+. .+++.+...+ + +..
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~~-~--g~~------- 62 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAKS-Y--GAS------- 62 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHH-c--CCE-------
Confidence 7999999999995 6999999999 99999999999987 577766553 3455555442 2 211
Q ss_pred EEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHcCCcEEEEEeecC
Q 013483 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLPMD 167 (442)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~~~~tl~~~~~~ 167 (442)
+.+.....- . ....|+.++++.+...++.. ...+.|+++.||. +.. .++.++++.+.+.+++..+.+.+..
T Consensus 63 v~~~r~~~l-~----~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~ 135 (222)
T TIGR03584 63 VPFLRPKEL-A----DDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFA 135 (222)
T ss_pred eEEeChHHH-c----CCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccC
Confidence 111111100 0 01257889999998877421 1147899999999 444 4588999998877788777776644
Q ss_pred CCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCccc
Q 013483 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (442)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~~ 247 (442)
.. ..+.. ..+++|+...+....... ++ + .....+..+.++|+++++.+.+ + . ..+
T Consensus 136 ~~--~~~~~-~~~~~g~~~~~~~~~~~~--~r------------Q-d~~~~y~~nga~y~~~~~~~~~---~--~--~~~ 190 (222)
T TIGR03584 136 FP--IQRAF-KLKENGGVEMFFPEHFNT--RS------------Q-DLEEAYHDAGQFYWGKSQAWLE---S--G--PIF 190 (222)
T ss_pred CC--hHHhe-EECCCCcEEecCCCcccC--CC------------C-CCchheeeCCeEEEEEHHHHHh---c--C--Ccc
Confidence 31 12222 334567666554221110 11 1 1123356688999999997642 1 0 111
Q ss_pred ccchhhhcccccceEEEEecc-eeeecCChHHHHHHhhhh
Q 013483 248 GSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 248 ~~~~l~~~i~~~~i~~~~~~g-~~~di~t~~~~~~an~~~ 286 (442)
+.++..|..+. ..+||++++||..|...+
T Consensus 191 ----------~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 191 ----------SPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred ----------CCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 24556666653 579999999999987644
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.9e-12 Score=113.12 Aligned_cols=107 Identities=19% Similarity=0.259 Sum_probs=80.8
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|.+||||||.|+||+ .||+|+|++|+ |||+|+++.+... +++++|++++.... +. . + +
T Consensus 1 ~~~iILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~---~~-~-~----~------ 58 (181)
T cd02503 1 ITGVILAGGKSRRMG-----GDKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER---YA-L-L----G------ 58 (181)
T ss_pred CcEEEECCCccccCC-----CCceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH---Hh-h-c----C------
Confidence 468999999999998 39999999999 9999999999988 89999999876543 11 0 1 1
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHH
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNH 152 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~ 152 (442)
+.++..... ..|+..+++.++..++ .+.+++++||+ +++.+ +..+++.+
T Consensus 59 -~~~v~~~~~--------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 59 -VPVIPDEPP--------GKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred -CcEeeCCCC--------CCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 122222211 2589999999988775 37999999999 55544 66777655
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.7e-11 Score=103.96 Aligned_cols=235 Identities=18% Similarity=0.256 Sum_probs=155.3
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
++..+||+|.=.+|||. .|||-.|+|+ |||.|+.+++.++|.++++|.+. ++++.+.+.. ++
T Consensus 2 ~~~~viIPAR~~STRLp------gKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATD--de~I~~av~~---~G------ 63 (247)
T COG1212 2 MKFVVIIPARLASTRLP------GKPLADIGGK-PMIVRVAERALKSGADRVVVATD--DERIAEAVQA---FG------ 63 (247)
T ss_pred CceEEEEecchhcccCC------CCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHH---hC------
Confidence 57789999999999996 7999999999 99999999999999999999984 5577777754 22
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~ 164 (442)
.+.+--.... ..||-.... +...+.- ...+-++=+.||. +++.. +.++++..+..++++.-++.
T Consensus 64 ---~~avmT~~~h-------~SGTdR~~E-v~~~l~~---~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~ 129 (247)
T COG1212 64 ---GEAVMTSKDH-------QSGTDRLAE-VVEKLGL---PDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAV 129 (247)
T ss_pred ---CEEEecCCCC-------CCccHHHHH-HHHhcCC---CcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeee
Confidence 1111111111 136544443 3333321 1246677789999 44443 67777777777666655555
Q ss_pred ecCCCc---CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 013483 165 PMDDSR---ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (442)
Q Consensus 165 ~~~~~~---~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~ 241 (442)
+..++. .++-..+..|.+|+...|...+-+...+. . . ..+.+...|+|.|++.+|.++....
T Consensus 130 ~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~----------~---~~p~l~HIGIYayr~~~L~~f~~~~- 194 (247)
T COG1212 130 KITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-F----------G---GTPFLRHIGIYAYRAGFLERFVALK- 194 (247)
T ss_pred ecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-c----------C---CcchhheeehHHhHHHHHHHHHhcC-
Confidence 444321 12334556788899999987665432110 0 0 0246778999999999998775532
Q ss_pred CCCccccc--chhhhcccccceEEEEeccee-eecCChHHHHHHhhhhhc
Q 013483 242 PTANDFGS--EIIPASANEQFLKAYLFNDYW-EDIGTIRSFFEANLALTA 288 (442)
Q Consensus 242 ~~~~~~~~--~~l~~~i~~~~i~~~~~~g~~-~di~t~~~~~~an~~~l~ 288 (442)
+..-+..+ +-|..+-.+++|.+......- ..++|++||.++.+.+..
T Consensus 195 ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 195 PSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred CchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 22111111 345556668899988887555 899999999999888754
|
|
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-10 Score=105.93 Aligned_cols=213 Identities=18% Similarity=0.238 Sum_probs=127.1
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccChh-hHHHHHHhhccCCCCcccC
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSA-SLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~~~ 86 (442)
+.+||||||.|+||. ...||.+++++|+ |+|.|+++.|.+. .+++|+||+..... ...+.+.+ .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-~--------- 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK-K--------- 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-T---------
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-C---------
Confidence 468999999999998 6789999999999 9999999999884 68999999976653 33333322 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~ 164 (442)
.+.++.-. ..-.++++.++..+... .+.+++..|=- ++... +.++++..+.. ..+.+...
T Consensus 67 --~v~iv~GG-----------~tR~~SV~ngL~~l~~~----~d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~ 128 (221)
T PF01128_consen 67 --KVKIVEGG-----------ATRQESVYNGLKALAED----CDIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPAL 128 (221)
T ss_dssp --TEEEEE-------------SSHHHHHHHHHHCHHCT----SSEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEE
T ss_pred --CEEEecCC-----------hhHHHHHHHHHHHHHcC----CCEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEE
Confidence 13443211 13667888888888742 25677766666 44444 67888776552 33455555
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~ 244 (442)
+..+ .+...+.++.+.+..++.. .+.--.-..|+.+.|.++.++.....
T Consensus 129 p~~D------Tik~v~~~~~v~~tldR~~-------------------------l~~~QTPQ~F~~~~l~~a~~~a~~~~ 177 (221)
T PF01128_consen 129 PVTD------TIKRVDDDGFVTETLDRSK-------------------------LWAVQTPQAFRFELLLEAYEKADEEG 177 (221)
T ss_dssp E-SS------EEEEESTTSBEEEEETGGG-------------------------EEEEEEEEEEEHHHHHHHHHTHHHHT
T ss_pred eccc------cEEEEecCCcccccCCHHH-------------------------eeeecCCCeecHHHHHHHHHHHHhcC
Confidence 5543 2334555777665543211 12233566788888877766542111
Q ss_pred cccccch--hhhcccccceEEEEecceeeecCChHHHHHHhhhh
Q 013483 245 NDFGSEI--IPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 245 ~~~~~~~--l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~ 286 (442)
..+.+|. +..+ +.++..++-+..=+-+.+|+|+.-|...+
T Consensus 178 ~~~tDdasl~~~~--g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 178 FEFTDDASLVEAA--GKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp HHHSSHHHHHHHT--TS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred CCccCHHHHHHHc--CCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 2222222 2222 56677666655667888999999987765
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.7e-12 Score=105.71 Aligned_cols=110 Identities=19% Similarity=0.302 Sum_probs=85.1
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|.+||+|||+|+||. ..-|||++++|+ |||+|+++.+++ .++++++++.++....++++....
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~g----------- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVG----------- 63 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcC-----------
Confidence 579999999999997 245999999999 999999999999 789999999999888888886532
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHH
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~ 153 (442)
++++.... .|--.=++.+.+.+. .++|++++|+ +++.. +..+++.+.
T Consensus 64 -v~vi~tpG----------~GYv~Dl~~al~~l~-------~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 -VKVIETPG----------EGYVEDLRFALESLG-------TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred -ceEEEcCC----------CChHHHHHHHHHhcC-------CceEEEecccccCCHHHHHHHHHHHh
Confidence 34443111 255556777777775 5999999999 44544 566666655
|
|
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=105.40 Aligned_cols=223 Identities=17% Similarity=0.197 Sum_probs=137.2
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 84 (442)
++++.+||||||.|+||. ...||.+++++|+ |||.|+++.|..+. +++|+|++........+.+.. +
T Consensus 2 ~~~~~~vilAaG~G~R~~---~~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~-~------- 69 (230)
T COG1211 2 RMMVSAVILAAGFGSRMG---NPVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK-L------- 69 (230)
T ss_pred CceEEEEEEcCccccccC---CCCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh-h-------
Confidence 356789999999999999 5899999999999 99999999998865 699999998644433322221 1
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS 162 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~ 162 (442)
.....++++... ..-.++++.++..+.+ ...+.|||..+=- ++..+ +.++++.. ....+.+.
T Consensus 70 ~~~~~v~~v~GG-----------~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~--~~~~aai~ 133 (230)
T COG1211 70 SADKRVEVVKGG-----------ATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELA--DKYGAAIL 133 (230)
T ss_pred ccCCeEEEecCC-----------ccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhh--ccCCcEEE
Confidence 011124444211 2467788888888873 1146777776666 44444 67777433 23344555
Q ss_pred EeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 013483 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (442)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~ 242 (442)
+.|..+. ....++++.+.....+..- +.----..|+.+.|.+..++.+.
T Consensus 134 alpv~DT------ik~~~~~~~i~~t~~R~~l-------------------------~~~QTPQ~F~~~~L~~a~~~a~~ 182 (230)
T COG1211 134 ALPVTDT------LKRVDADGNIVETVDRSGL-------------------------WAAQTPQAFRLELLKQALARAFA 182 (230)
T ss_pred EeeccCc------EEEecCCCCeeeccChhhh-------------------------hhhhCCccccHHHHHHHHHHHHh
Confidence 6555442 2333445566554332211 11123456777777777666543
Q ss_pred CCcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 243 ~~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
....+..|.--....+.++..+.-+-+-+.+-+|+|+..|+..+.
T Consensus 183 ~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 183 EGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred cCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhc
Confidence 333332322111112566776665556788999999999987764
|
|
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=115.53 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=57.0
Q ss_pred eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCC--
Q 013483 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDK-- 395 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~-- 395 (442)
.+.|+++++|+ .+.| .+++|+.++.||+++.|++.+.++.. ++... ..++...+.||++|.|+ +|.|..
T Consensus 23 ~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~----~~~~~--~~g~~~~v~IG~~~~Ig~~~~I~~~~ 96 (254)
T cd03351 23 FCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEA----PQDLK--YKGEPTRLEIGDNNTIREFVTIHRGT 96 (254)
T ss_pred CcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCc----cccee--ecCCCceEEECCCCEECCccEEeccc
Confidence 35556666665 4444 44555555555555555555555431 00000 00000115666666664 344432
Q ss_pred -----CcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 396 -----NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 396 -----~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.++||+++.+.....+...++||++++|+.++.+ ||++++|++++.|
T Consensus 97 ~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i 153 (254)
T cd03351 97 AQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAV 153 (254)
T ss_pred cCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceE
Confidence 2444444444444333344556666666655443 7888888877654
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=106.19 Aligned_cols=95 Identities=15% Similarity=0.264 Sum_probs=67.9
Q ss_pred eeEEcCCCEEe-ceEE----eeeEEcCCcEECCCCEEeceE----------EECCccccchhhhhhhhcCCCcceEeCCC
Q 013483 321 DSIISHGSFIT-SSFI----EHSVVGIRSRINANVHLKDTM----------MLGADFYETDAEVASLLAEGRVPVGIGEN 385 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i----~~~~ig~~~~i~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 385 (442)
++.||++|.|+ .+.+ ..++||++|.|++++.|.+++ .+|++ +.|+.+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~------------------~~i~~~ 78 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSN------------------NVFEVG 78 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCC------------------CEECCC
Confidence 56777777777 5555 247999999999999998764 45554 677777
Q ss_pred cEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 386 TKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 386 ~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
+.|.+++||++|.||+++++.. ..+|++++.||+++.| .+++.|++++
T Consensus 79 ~~i~~~~IGd~~~Ig~~a~I~~------gv~Ig~~~~IgagsvV-~~~~~i~~~~ 126 (164)
T cd04646 79 CKCEALKIGNNNVFESKSFVGK------NVIITDGCIIGAGCKL-PSSEILPENT 126 (164)
T ss_pred cEEEeeEECCCCEEeCCCEECC------CCEECCCCEEeCCeEE-CCCcEECCCe
Confidence 8888899999999999998875 4566777777777444 4444444443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=109.17 Aligned_cols=111 Identities=13% Similarity=0.268 Sum_probs=78.7
Q ss_pred cccccCccCCCceecCCceeeeEEcCCCEEe-ceEEe----eeEEcCCcEECCCCEEec----eEEECCccccchhhhhh
Q 013483 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD----TMMLGADFYETDAEVAS 371 (442)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~~~~ 371 (442)
.+.+++.|.+.+.+.+ +++||++|.|+ .+.|. .++||++|.|+++|.|.. .++++++
T Consensus 10 ~i~~~~~I~~~a~I~G----~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~---------- 75 (192)
T TIGR02287 10 VVHPEAYVHPTAVLIG----DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN---------- 75 (192)
T ss_pred cCCCCcEECCCCEEEe----eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC----------
Confidence 3444555555554432 56777777777 55553 479999999999999942 3455554
Q ss_pred hhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 372 LLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 372 ~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
+.|+++|.|.+|+||++|.||.++++.+ ..+|++++.|++++. |.+++.|++++
T Consensus 76 --------~~Ig~~a~I~~siIg~~~~IG~ga~I~~------g~~IG~~s~Vgags~-V~~~~~ip~~~ 129 (192)
T TIGR02287 76 --------GHVGHGAILHGCIVGRNALVGMNAVVMD------GAVIGENSIVAASAF-VKAGAEMPAQY 129 (192)
T ss_pred --------CEECCCCEEcCCEECCCCEECCCcccCC------CeEECCCCEEcCCCE-ECCCCEECCCe
Confidence 8999999999999999999999998865 345777777777754 35555555554
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=114.87 Aligned_cols=113 Identities=19% Similarity=0.293 Sum_probs=78.3
Q ss_pred CCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEEe----eeEEcCCcEECCCCEEe----------ceEEECCccc
Q 013483 299 TKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLK----------DTMMLGADFY 363 (442)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~----------~~~~~~~~~~ 363 (442)
.+.+...+.+.+.+.+.+ ++.||++|.|+ ++.|. +++||++|.|+++|+|. ..+++|++
T Consensus 52 ~p~I~~~~~I~p~A~V~G----~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~-- 125 (269)
T PLN02296 52 APVVDKDAFVAPSASVIG----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDN-- 125 (269)
T ss_pred CCccCCCCEECCCcEEEc----ceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCC--
Confidence 344555555666555533 45666666666 44452 35899999999999996 24566776
Q ss_pred cchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 364 ETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
|.||++|.|.+|+||++|.||.++++.+ ..+|++++.|++|+.| .+++.|++++
T Consensus 126 ----------------v~IG~~avI~g~~Igd~v~IG~ga~I~~------gv~Ig~~a~IgagSvV-~~~~~I~~~~ 179 (269)
T PLN02296 126 ----------------VTIGHSAVLHGCTVEDEAFVGMGATLLD------GVVVEKHAMVAAGALV-RQNTRIPSGE 179 (269)
T ss_pred ----------------CEECCCceecCCEECCCcEECCCcEECC------CeEECCCCEECCCCEE-ecCCEeCCCe
Confidence 8999999988999999999999999875 4466777777777444 4555555544
|
|
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-11 Score=117.81 Aligned_cols=120 Identities=20% Similarity=0.282 Sum_probs=84.0
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
++++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++++|++....+.+.+++. +
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~-------~--- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLFP-------G--- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhcc-------C---
Confidence 457899999999999995 379999999999 999999999986 489999877655433332211 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCc
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~ 158 (442)
+.++...... ..|+..+++.++..++ .+.+++++||+ ++..+ +.++++.+...+++
T Consensus 67 ----~~~i~d~~~g-------~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 67 ----LPVYPDILPG-------FQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred ----CcEEecCCCC-------CCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 1111111110 1478889999888775 36799999998 55555 56777655444443
|
|
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=115.60 Aligned_cols=62 Identities=15% Similarity=0.335 Sum_probs=32.6
Q ss_pred eEeCCCcEee-eeEeCC------CcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCcc
Q 013483 380 VGIGENTKIK-ECIIDK------NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFV 441 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~------~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~ 441 (442)
+.||++|.|. ++.|.. .++||+++.+.++..+...+.||++++|+.++++ ||++++|++++.
T Consensus 78 v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~ 151 (255)
T PRK12461 78 LEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCL 151 (255)
T ss_pred eEECCceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCE
Confidence 5555555554 344432 3444444444444444445556666666555443 666666666654
|
|
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=105.12 Aligned_cols=96 Identities=20% Similarity=0.312 Sum_probs=70.8
Q ss_pred eeEEcCCCEEe-ceEEe----eeEEcCCcEECCCCEEec----eEEECCccccchhhhhhhhcCCCcceEeCCCcEeeee
Q 013483 321 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD----TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 391 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~ 391 (442)
++.||++|+|+ .+.+. .++||++|.|+++|.|.. .++++++ +.|++++.+.++
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~------------------~~Ig~~~~i~~~ 79 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN------------------GHIGHGAILHGC 79 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC------------------CEECCCcEEECC
Confidence 56777777776 55553 488999999999999932 3455555 899999999999
Q ss_pred EeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCcc
Q 013483 392 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 441 (442)
Q Consensus 392 ~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~ 441 (442)
+||++|.||.++++.+ ..+|+++++|+.++.+ .+++.|+++++
T Consensus 80 ~Ig~~~~Ig~~~~I~~------g~~Ig~~~~Ig~~s~v-~~~~~i~~~~~ 122 (155)
T cd04745 80 TIGRNALVGMNAVVMD------GAVIGEESIVGAMAFV-KAGTVIPPRSL 122 (155)
T ss_pred EECCCCEECCCCEEeC------CCEECCCCEECCCCEe-CCCCEeCCCCE
Confidence 9999999999999975 3567777777777543 55555555543
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-11 Score=112.89 Aligned_cols=113 Identities=16% Similarity=0.276 Sum_probs=79.7
Q ss_pred CcccccCccCCCceecCCceeeeEEcCCCEEe-ceEE----eeeEEcCCcEECCCCEEe----------ceEEECCcccc
Q 013483 300 KPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI----EHSVVGIRSRINANVHLK----------DTMMLGADFYE 364 (442)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i----~~~~ig~~~~i~~~~~i~----------~~~~~~~~~~~ 364 (442)
+.+..++.+.+++.+.+ ++.||++|.|+ ++.+ ...+||++|.|+++|.|+ ..+++|++
T Consensus 60 p~i~~~~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~--- 132 (246)
T PLN02472 60 PKVAVDAYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRY--- 132 (246)
T ss_pred CccCCCCEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCC---
Confidence 34455555666665533 45666666666 4444 237899999999999995 24666766
Q ss_pred chhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCcc
Q 013483 365 TDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 441 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~ 441 (442)
|.||++|.|.+|+||++|.||.++++.+ ...|++++.|+.++ ++.++..|++|++
T Consensus 133 ---------------v~IG~~s~L~~~~Igd~v~IG~~svI~~------gavIg~~~~Ig~gs-vV~~g~~Ip~g~~ 187 (246)
T PLN02472 133 ---------------VTIGAYSLLRSCTIEPECIIGQHSILME------GSLVETHSILEAGS-VLPPGRRIPTGEL 187 (246)
T ss_pred ---------------CEECCCcEECCeEEcCCCEECCCCEECC------CCEECCCCEECCCC-EECCCCEeCCCCE
Confidence 8999999999999999999999999976 34566666666664 3466666666553
|
|
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=114.74 Aligned_cols=12 Identities=8% Similarity=-0.039 Sum_probs=6.3
Q ss_pred EcCCcEEcCCcc
Q 013483 430 ILKNSVITDGFV 441 (442)
Q Consensus 430 i~~~~~v~~~~~ 441 (442)
||++++||++++
T Consensus 144 Igd~~~Ig~~~~ 155 (262)
T PRK05289 144 VGDYAIIGGLTA 155 (262)
T ss_pred cCCcEEEeecce
Confidence 555555555544
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-11 Score=105.24 Aligned_cols=111 Identities=21% Similarity=0.312 Sum_probs=75.2
Q ss_pred ccccCccCCCceecCCceeeeEEcCCCEEe-ceEEe-----eeEEcCCcEECCCCEEe----ceEEECCccccchhhhhh
Q 013483 302 IYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLK----DTMMLGADFYETDAEVAS 371 (442)
Q Consensus 302 ~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~-----~~~ig~~~~i~~~~~i~----~~~~~~~~~~~~~~~~~~ 371 (442)
+.+++.+.+.+.+.+ ++.||++|.|+ ++.+. ++.||++|.|++++.|. ..+.+|++
T Consensus 5 ig~~~~I~~~a~i~~----~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~---------- 70 (167)
T cd00710 5 IDPSAYVHPTAVVIG----DVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKN---------- 70 (167)
T ss_pred eCCCeEECCCCEEEe----eEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCC----------
Confidence 334444444444422 45566666666 44442 47888888888888883 35666665
Q ss_pred hhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE----EcCCcEEcCCcc
Q 013483 372 LLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV----ILKNSVITDGFV 441 (442)
Q Consensus 372 ~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v----i~~~~~v~~~~~ 441 (442)
+.|+++|.|. .++||++|.||.++.+. +.+||++++||.++.| |++++.|+++++
T Consensus 71 --------~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~-------~~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~~~ 130 (167)
T cd00710 71 --------VSIAHGAIVHGPAYIGDNCFIGFRSVVF-------NAKVGDNCVIGHNAVVDGVEIPPGRYVPAGAV 130 (167)
T ss_pred --------ceECCCCEEeCCEEECCCCEECCCCEEE-------CCEECCCCEEcCCCEEeCCEeCCCCEECCCCE
Confidence 7788888876 48888888888888885 3567888888877766 667777777765
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-11 Score=112.62 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=6.5
Q ss_pred EcCCcEEcCCc
Q 013483 430 ILKNSVITDGF 440 (442)
Q Consensus 430 i~~~~~v~~~~ 440 (442)
|+++++|-+|+
T Consensus 225 vp~~svv~~g~ 235 (269)
T TIGR00965 225 VPAGSVVVSGN 235 (269)
T ss_pred cCCCcEEecCC
Confidence 56666665553
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-11 Score=106.47 Aligned_cols=111 Identities=23% Similarity=0.299 Sum_probs=79.0
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
+.+|.+||||||+++|| .+|+|+++.|+ ||++|+++.|....- .++|....+.+. +.. + +
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~----~--g--- 61 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YAE----F--G--- 61 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hhc----c--C---
Confidence 46899999999999999 58999999999 999999999999865 555554433221 111 1 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecCH-HHHHHHHHH
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDY-MDFVQNHRQ 154 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~l-~~~l~~~~~ 154 (442)
++++...... .|...+++.++.... .+.+++++||+ ++..++ ..+++...+
T Consensus 62 ----~~vv~D~~~~--------~GPL~Gi~~al~~~~------~~~~~v~~~D~P~i~~~lv~~l~~~~~~ 114 (192)
T COG0746 62 ----LPVVPDELPG--------FGPLAGILAALRHFG------TEWVLVLPCDMPFIPPELVERLLSAFKQ 114 (192)
T ss_pred ----CceeecCCCC--------CCCHHHHHHHHHhCC------CCeEEEEecCCCCCCHHHHHHHHHhhcc
Confidence 2233322221 288899999988887 38999999999 556554 555555443
|
|
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=108.58 Aligned_cols=125 Identities=19% Similarity=0.266 Sum_probs=85.8
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
+.+||||||+|+||+ .||.|++++|+ |||+|+++.+.+.++++++|++++..+.+. .+.... .. . .
T Consensus 1 ~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~-~~-~--~--- 66 (190)
T TIGR03202 1 IVAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYL-LA-D--E--- 66 (190)
T ss_pred CeEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhh-hc-C--C---
Confidence 358999999999998 48999999999 999999999888899999999987654322 111110 00 0 0
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCc
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~ 158 (442)
.+.++..... ..|++.+++.++..+.. ...+.+++++||+ ++..+ +.++++....+...
T Consensus 67 ~~~~~~~~~~--------~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~ 127 (190)
T TIGR03202 67 RIMLVCCRDA--------CEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRPDD 127 (190)
T ss_pred CeEEEECCCh--------hhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCC
Confidence 1223221111 24888999999887632 1147899999999 55555 66777765544443
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=118.29 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=45.1
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCCCcc----------cceeeCCCeEEccCcEE------------EcCCcEE
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQ----------EADRSAEGFYIRSGVTV------------ILKNSVI 436 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~----------~~~~~~~~~~i~~~~~v------------i~~~~~v 436 (442)
+.||+.+.+. +|.|+.+++||++|.+.+...=. +...||+++-||+|+.. ||++++|
T Consensus 327 ~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFi 406 (460)
T COG1207 327 ATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFI 406 (460)
T ss_pred cccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEE
Confidence 6777777775 78888888888888887653111 12367788888888543 9999999
Q ss_pred cCCcc
Q 013483 437 TDGFV 441 (442)
Q Consensus 437 ~~~~~ 441 (442)
|.+|.
T Consensus 407 GSns~ 411 (460)
T COG1207 407 GSNSQ 411 (460)
T ss_pred ccCCc
Confidence 99885
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-11 Score=104.92 Aligned_cols=103 Identities=15% Similarity=0.235 Sum_probs=76.6
Q ss_pred eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcE
Q 013483 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 398 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ 398 (442)
+++|++++.|+ .+.+ ..++||++|.|++++.|++.++++++ +.|++++.|.+|+|++++.
T Consensus 17 ~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~siig~~~~ 78 (163)
T cd05636 17 PVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDG------------------CVVGNSVEVKNSIIMDGTK 78 (163)
T ss_pred CeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCC------------------CEECCCcEEeeeEecCCCE
Confidence 35566666666 4555 46999999999999999987777776 9999999999999999999
Q ss_pred ECCCeEEccCCCcccceeeCCCeEEccC-----------------------cEEEcCCcEEcCCccC
Q 013483 399 IGKNVIIANSEGIQEADRSAEGFYIRSG-----------------------VTVILKNSVITDGFVI 442 (442)
Q Consensus 399 ig~~~~~~~~~~~~~~~~~~~~~~i~~~-----------------------~~vi~~~~~v~~~~~i 442 (442)
|+.++.+.+ ..+.++.++++++.+..+ -++||++++||+++.|
T Consensus 79 I~~~~~i~~-siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i 144 (163)
T cd05636 79 VPHLNYVGD-SVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSL 144 (163)
T ss_pred eccCCEEec-CEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEE
Confidence 999888764 345555566666555220 1457777777777653
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-11 Score=102.10 Aligned_cols=110 Identities=24% Similarity=0.362 Sum_probs=77.3
Q ss_pred cccccCccCCCceecCCceeeeEEcCCCEEe-ceEE----eeeEEcCCcEECCCCEEec----eEEECCccccchhhhhh
Q 013483 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI----EHSVVGIRSRINANVHLKD----TMMLGADFYETDAEVAS 371 (442)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i----~~~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~~~~ 371 (442)
.+.+++.+.+.+.+- .+..|++++.|+ .+.+ ....||++|.|++|++|.- .+.+|++
T Consensus 13 ~i~~~a~Va~~A~vi----GdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~---------- 78 (176)
T COG0663 13 KIDPTAFVAPSATVI----GDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDD---------- 78 (176)
T ss_pred CCCCceEECCCCEEE----EeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCC----------
Confidence 344444444444442 266677777766 4444 4579999999999999954 6788887
Q ss_pred hhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCC
Q 013483 372 LLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDG 439 (442)
Q Consensus 372 ~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~ 439 (442)
+.|||+|.|..|.||++|.||-|+++.|+ ..||+++.||+|+.| -++..++++
T Consensus 79 --------vtIGH~aivHGc~Ig~~~lIGmgA~vldg------a~IG~~~iVgAgalV-~~~k~~p~~ 131 (176)
T COG0663 79 --------VTIGHGAVVHGCTIGDNVLIGMGATVLDG------AVIGDGSIVGAGALV-TPGKEIPGG 131 (176)
T ss_pred --------cEEcCccEEEEeEECCCcEEecCceEeCC------cEECCCcEEccCCcc-cCCcCCCCC
Confidence 99999999999999999999999999873 345666666666444 344444443
|
|
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-11 Score=116.71 Aligned_cols=134 Identities=22% Similarity=0.258 Sum_probs=80.6
Q ss_pred cccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec--------------------eE
Q 013483 301 PIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD--------------------TM 356 (442)
Q Consensus 301 ~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~--------------------~~ 356 (442)
.+..++.++.++.+ .++.|. ++.||++|.|+ ++.| .+++||++|.|+++++|+. .+
T Consensus 117 ~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~v 196 (324)
T TIGR01853 117 VIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRV 196 (324)
T ss_pred EEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceE
Confidence 33333444444444 334442 56677777777 5666 4788888888888888863 25
Q ss_pred EECCccccchhh-------hhhhhcCCCcceEeCCCcEee-eeE------------eCCCcEECCCeEEccCCCccccee
Q 013483 357 MLGADFYETDAE-------VASLLAEGRVPVGIGENTKIK-ECI------------IDKNARIGKNVIIANSEGIQEADR 416 (442)
Q Consensus 357 ~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~i~-~~~------------ig~~~~ig~~~~~~~~~~~~~~~~ 416 (442)
++|++.++..-. ..+..+++ +.|++++.|. +|. |..+++||++|.++....+..+.+
T Consensus 197 vIgd~v~IGa~~~I~r~~~~~t~Ig~~---~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~ 273 (324)
T TIGR01853 197 IIEDDVEIGANTTIDRGAFDDTIIGEG---TKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLE 273 (324)
T ss_pred EECCCcEECCCCEEecCCcCcceecCC---cEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCE
Confidence 555554443321 12233333 3344444432 333 334456666777777778888889
Q ss_pred eCCCeEEccCcEE---EcCCcEEc
Q 013483 417 SAEGFYIRSGVTV---ILKNSVIT 437 (442)
Q Consensus 417 ~~~~~~i~~~~~v---i~~~~~v~ 437 (442)
||++++||.+++| |.+++++.
T Consensus 274 Ig~~~~ig~~s~V~~~v~~~~~~~ 297 (324)
T TIGR01853 274 IGDNVTIGAKSGVTKSIPPPGVYG 297 (324)
T ss_pred ECCCCEEccCCEeCCcCCCCcEEE
Confidence 9999999999888 77777663
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-11 Score=103.49 Aligned_cols=82 Identities=21% Similarity=0.345 Sum_probs=62.2
Q ss_pred eeeEEcCCcEECCCCEEec---eEEECCccccchhhhhhhhcCCCcceEeCCCcEee-----eeEeCCCcEECCCeEEcc
Q 013483 336 EHSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----ECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 336 ~~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-----~~~ig~~~~ig~~~~~~~ 407 (442)
.++.||+++.|+++++|+. .+.+|++ +-|.+||+|. .+.||++|+||.++++
T Consensus 28 GdV~Ig~~vsIw~~aVlRgD~~~I~IG~~------------------tNIQDg~ViH~~~~~p~~IG~~vtIGH~aiv-- 87 (176)
T COG0663 28 GDVRIGAGVSIWPGAVLRGDVEPIRIGAR------------------TNIQDGVVIHADPGYPVTIGDDVTIGHGAVV-- 87 (176)
T ss_pred EeEEECCCCEECCceEEEccCCceEECCC------------------ceecCCeEEecCCCCCeEECCCcEEcCccEE--
Confidence 6899999999999999965 4555554 5666666662 3555555555555555
Q ss_pred CCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 408 SEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.. ++|+++++||.|++| ||++|+||+||.|
T Consensus 88 ----HG-c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV 122 (176)
T COG0663 88 ----HG-CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALV 122 (176)
T ss_pred ----EE-eEECCCcEEecCceEeCCcEECCCcEEccCCcc
Confidence 34 899999999999998 9999999999875
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-11 Score=108.33 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=57.6
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCC------
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEG------ 410 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~------ 410 (442)
++.||+++.|+++|+|.++++ |++ +.|+++|.|.+++||++|.|++++.+.+...
T Consensus 19 ~~~IG~~~~Ig~~a~I~~s~I-G~~------------------s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s 79 (204)
T TIGR03308 19 ESKLGRYTEIGERTRLREVAL-GDY------------------SYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPT 79 (204)
T ss_pred ccEeCCCcEECCCcEEeCCEE-CCC------------------CEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccc
Confidence 567777777777777776544 443 6777777777777777777777777764310
Q ss_pred -------------------------cccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 411 -------------------------IQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 411 -------------------------~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
......||++++||.+++| ||++++|++|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v 141 (204)
T TIGR03308 80 LHHFTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVV 141 (204)
T ss_pred ccccccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence 1124467777777777665 6777777777653
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.7e-11 Score=107.38 Aligned_cols=118 Identities=20% Similarity=0.267 Sum_probs=79.4
Q ss_pred cCccCCCcee-cCCcee-eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceE
Q 013483 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 381 (442)
Q Consensus 305 ~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (442)
.+.+++++.+ +.+.+. ++.|+++|.|+ .+.|.++.||++|.|++++.|.++++ +++ +.
T Consensus 15 ~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i-g~~------------------~~ 75 (193)
T cd03353 15 DVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVI-GNG------------------AT 75 (193)
T ss_pred CeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEE-CCC------------------CE
Confidence 3444444444 334443 58889999998 67778889999999999999987655 444 77
Q ss_pred eCCCcEee-eeEeCCCcEECCCeEEccC-----------CCcccceeeCCCeEEccCc------------EEEcCCcEEc
Q 013483 382 IGENTKIK-ECIIDKNARIGKNVIIANS-----------EGIQEADRSAEGFYIRSGV------------TVILKNSVIT 437 (442)
Q Consensus 382 i~~~~~i~-~~~ig~~~~ig~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~------------~vi~~~~~v~ 437 (442)
|++++.|. +++|+++++|++++.+.+. ..+ ....|++++.||+++ ++||++++||
T Consensus 76 Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig 154 (193)
T cd03353 76 VGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYL-GDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIG 154 (193)
T ss_pred ECCccEEcCccEECCCCEECCcEEEecceEcCCCEeccccee-cccEECCCCEEcCceEEeccCCccccCCEECCCeEEc
Confidence 88888776 6777777777776655432 111 234566677776653 2478888888
Q ss_pred CCccC
Q 013483 438 DGFVI 442 (442)
Q Consensus 438 ~~~~i 442 (442)
++++|
T Consensus 155 ~~~~i 159 (193)
T cd03353 155 SNSQL 159 (193)
T ss_pred cCCEE
Confidence 77653
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.2e-11 Score=117.21 Aligned_cols=171 Identities=20% Similarity=0.177 Sum_probs=89.8
Q ss_pred ecCChHH-HHHHhhhhhcCC--CCccccCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCc
Q 013483 272 DIGTIRS-FFEANLALTAHP--PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRS 344 (442)
Q Consensus 272 di~t~~~-~~~an~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~ 344 (442)
-+++|+. +.++.+.+.... .....+++.+.+.+++.++.++.+ +++.|. ++.||++|+|. ++.| .++.||++|
T Consensus 76 ~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~ 155 (343)
T PRK00892 76 VVKNPYLAFARLAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADC 155 (343)
T ss_pred EeCCHHHHHHHHHHHhccccccccCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCC
Confidence 3455553 444444443222 123456677777777777776666 455443 46666666666 5555 456777777
Q ss_pred EECCCCEEeceEEECCccccchhhhhhhh------cCC-------CcceEeCCCcEee-eeEeC----CCcEECCCeEEc
Q 013483 345 RINANVHLKDTMMLGADFYETDAEVASLL------AEG-------RVPVGIGENTKIK-ECIID----KNARIGKNVIIA 406 (442)
Q Consensus 345 ~i~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~-------~~~~~i~~~~~i~-~~~ig----~~~~ig~~~~~~ 406 (442)
.|+++++|++++.+|+++.+.+....... ..+ ...+.||+++.|+ ++.|. .+++||+++.+.
T Consensus 156 ~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~ 235 (343)
T PRK00892 156 RLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKID 235 (343)
T ss_pred EeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEe
Confidence 77777777666666665332221111000 000 0014445554443 33332 234444444444
Q ss_pred cCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 407 NSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+...+...++||+++.|++++.+ ||++++||.++.|
T Consensus 236 ~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i 276 (343)
T PRK00892 236 NLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGI 276 (343)
T ss_pred CCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEE
Confidence 44444455566666666655443 7777777777654
|
|
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-11 Score=108.37 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=81.7
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
+.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++++|++++.... +... ..+
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~----~~~------ 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQA----GFG------ 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc----cCC------
Confidence 468999999999997 259999999999 999999999976 589998888654321 1111 011
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCC
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGA 157 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~ 157 (442)
+.++..... ...|+..+++.++..++ .+.+++++||+ ++..+ +.++++.+....+
T Consensus 62 -~~~i~~~~~-------~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 118 (186)
T TIGR02665 62 -LPVVPDALA-------DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDA 118 (186)
T ss_pred -CcEEecCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCC
Confidence 122222111 12589999999988775 37899999999 66655 5677766543333
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-10 Score=105.08 Aligned_cols=115 Identities=25% Similarity=0.323 Sum_probs=77.3
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccCh--hhHHHHHHhhccCCCCcccCC
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS--ASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~ 87 (442)
|||||+|.++||. +|+|+|++|+ ||++|+++.+.+++ +++++|+++... +.+.+++.. . +
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-~----~----- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-L----G----- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-c----C-----
Confidence 7999999999994 5999999999 99999999999987 899999998664 455555432 1 1
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEE
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADIT 160 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~t 160 (442)
++++.... .+.......+....+ .+.++++.||+ ++... +.++++.++..+.+++
T Consensus 65 --v~~v~~~~----------~~~l~~~~~~~~~~~------~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 --VKVFRGSE----------EDVLGRYYQAAEEYN------ADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred --CeEEECCc----------hhHHHHHHHHHHHcC------CCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 22222111 111111222221122 47899999999 55544 7888888776555544
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.2e-11 Score=106.38 Aligned_cols=107 Identities=16% Similarity=0.248 Sum_probs=71.4
Q ss_pred ccCccCCCceecCCceeeeEEcCCCEEe-ceEEe----eeEEcCCcEECCCCEEece----EEECCccccchhhhhhhhc
Q 013483 304 TSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLA 374 (442)
Q Consensus 304 ~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~ 374 (442)
+++.|.+.+.+.+ ++.||++|.|+ ++.|. .++||++|.|+++|.|+.. ++++++
T Consensus 15 ~~a~I~~~a~I~g----~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~------------- 77 (196)
T PRK13627 15 PTAFVHPSAVLIG----DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGEN------------- 77 (196)
T ss_pred CCeEECCCCEEEC----ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCC-------------
Confidence 3444444444422 45666666666 44442 2578888888888888653 455554
Q ss_pred CCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCC
Q 013483 375 EGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDG 439 (442)
Q Consensus 375 ~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~ 439 (442)
+.||++|.+.+|+||++|.||.++++.+ ..+||+++.|++|+.| -++..++++
T Consensus 78 -----~~Ig~~a~i~g~vIG~~v~IG~ga~V~~------g~~IG~~s~Vgags~V-~~~~~ip~~ 130 (196)
T PRK13627 78 -----GHIGHGAILHGCVIGRDALVGMNSVIMD------GAVIGEESIVAAMSFV-KAGFQGEKR 130 (196)
T ss_pred -----CEECCCcEEeeEEECCCCEECcCCccCC------CcEECCCCEEcCCCEE-eCCcCcCCC
Confidence 8899999999999999999999998865 3457777777777655 344444443
|
|
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=113.53 Aligned_cols=110 Identities=12% Similarity=0.182 Sum_probs=76.2
Q ss_pred cccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcc
Q 013483 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 5 ~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 84 (442)
.+.++.+||||||+|+||+ .+|+|+|+.|+ |||+|+++.+... +++++|+++..... .+.. + +
T Consensus 171 ~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~~-~~~vvV~~~~~~~~---~~~~-~----~-- 233 (369)
T PRK14490 171 EEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRPH-CQEVFISCRAEQAE---QYRS-F----G-- 233 (369)
T ss_pred ccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHhh-CCEEEEEeCCchhh---HHhh-c----C--
Confidence 3466789999999999997 59999999999 9999999999864 78888877544221 1111 1 1
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHH
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQ 150 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~ 150 (442)
+.++..... ..|...++..+..... .+.+++++||+ +++.+ +..+++
T Consensus 234 -----v~~i~d~~~--------~~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~ 282 (369)
T PRK14490 234 -----IPLITDSYL--------DIGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVE 282 (369)
T ss_pred -----CcEEeCCCC--------CCCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHH
Confidence 223322211 1477778887766554 36899999999 55555 455554
|
|
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.5e-11 Score=104.70 Aligned_cols=92 Identities=13% Similarity=0.268 Sum_probs=60.4
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCCCcceEeCCCcEee-----eeEe
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----ECII 393 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-----~~~i 393 (442)
+.|++++.|. .+++||++|.|+++|+|..+ ++++.+ +.||++|.|. +|+|
T Consensus 17 a~I~~~a~I~----g~V~IG~~~~I~~~avIrgd~~~i~Ig~~------------------~~Ig~~~~I~~~~~~~siI 74 (196)
T PRK13627 17 AFVHPSAVLI----GDVIVGAGVYIGPLASLRGDYGRLIVQAG------------------ANLQDGCIMHGYCDTDTIV 74 (196)
T ss_pred eEECCCCEEE----CceEECCCCEECCCCEEecCCccEEECCC------------------CEECCCCEEeCCCCCCCEE
Confidence 4444444443 35778888888888888654 466665 7777777773 3677
Q ss_pred CCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 394 DKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 394 g~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++++.||.++++. ..+|+++++||.++++ ||++++|++||+|
T Consensus 75 g~~~~Ig~~a~i~-------g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V 121 (196)
T PRK13627 75 GENGHIGHGAILH-------GCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFV 121 (196)
T ss_pred CCCCEECCCcEEe-------eEEECCCCEECcCCccCCCcEECCCCEEcCCCEE
Confidence 7777777777653 2456666666666544 7788888877764
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-11 Score=121.07 Aligned_cols=122 Identities=17% Similarity=0.210 Sum_probs=66.4
Q ss_pred cccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEe-eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCC
Q 013483 301 PIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGR 377 (442)
Q Consensus 301 ~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (442)
.+.+.+.++.++.| ..+.+.+++||++|.|+ ++.|. +++||++|.|++++.|.++++ +.+..+.. .... .+
T Consensus 282 ~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i-~~~~~i~~---~~~i-~~- 355 (446)
T PRK14353 282 VFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKL-GEGAKVNH---LTYI-GD- 355 (446)
T ss_pred EECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEE-CCCCEECC---eeEE-cC-
Confidence 33333444444444 23444567777777777 56663 677777777777776654333 22111100 0000 01
Q ss_pred cceEeCCCcEee-eeEe-------CCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEc
Q 013483 378 VPVGIGENTKIK-ECII-------DKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVIT 437 (442)
Q Consensus 378 ~~~~i~~~~~i~-~~~i-------g~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~ 437 (442)
+.||++|.|+ ++++ .+++.||+++.++. ..++..++.||.++. ||.++.|-
T Consensus 356 --~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~------~~~i~~~~~Ig~~~~-ig~~s~v~ 414 (446)
T PRK14353 356 --ATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGS------NSALVAPVTIGDGAY-IASGSVIT 414 (446)
T ss_pred --cEEcCCcEECCceeeeccccccCCCcEECCCcEECC------CCEEeCCCEECCCCE-ECCCCEEC
Confidence 4566666665 3444 23556666666653 456777788888844 47777664
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.1e-11 Score=121.45 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=102.8
Q ss_pred eeecCChHHHHHHhhhh-hcCC---CCccc-----------cCCCCc-ccccCccCCCcee-cCCcee-eeEEcCCCEEe
Q 013483 270 WEDIGTIRSFFEANLAL-TAHP---PMFSF-----------YDATKP-IYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT 331 (442)
Q Consensus 270 ~~di~t~~~~~~an~~~-l~~~---~~~~~-----------~~~~~~-~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~ 331 (442)
.+.+.++++|+.+|..+ +... ..... .++... +.+.+.++.++.| +++.|. ++.||++|.|+
T Consensus 219 ~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~ 298 (481)
T PRK14358 219 AFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIG 298 (481)
T ss_pred EEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEEC
Confidence 44567789999988766 3221 11111 112221 2445556666666 455554 47789999998
Q ss_pred -ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCC
Q 013483 332 -SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSE 409 (442)
Q Consensus 332 -~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~ 409 (442)
.+.|.+|+||++|.|+++++|.++ ++|++ +.|++++.|. +++||++|+|++++.+.+..
T Consensus 299 ~~~~i~~svI~~~~~I~~~~~i~~~-~ig~~------------------~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~ 359 (481)
T PRK14358 299 AYSVVTDSVLHEGAVIKPHSVLEGA-EVGAG------------------SDVGPFARLRPGTVLGEGVHIGNFVETKNAR 359 (481)
T ss_pred CCCEEeeeEECCCCEEeecceecCC-eEeCc------------------eEECCccEEcCCcEECCCCEECCCEEECCce
Confidence 777888999999999999999775 55555 7888888886 78888888888876654322
Q ss_pred -----Ccc-----cceeeCCCeEEccCcE------------EEcCCcEEcCCccC
Q 013483 410 -----GIQ-----EADRSAEGFYIRSGVT------------VILKNSVITDGFVI 442 (442)
Q Consensus 410 -----~~~-----~~~~~~~~~~i~~~~~------------vi~~~~~v~~~~~i 442 (442)
.+. ...+||+++.||.++. +||++++||++|+|
T Consensus 360 i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i 414 (481)
T PRK14358 360 LDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTL 414 (481)
T ss_pred ecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEE
Confidence 111 2357778888777753 37888888888754
|
|
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.24 E-value=5e-11 Score=103.94 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=53.8
Q ss_pred eeeEEcCCcEECCCCEEec---eEEECCccccchhhhhhhhcCCCcceEeCCCcEeeee-----------EeCCCcEECC
Q 013483 336 EHSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC-----------IIDKNARIGK 401 (442)
Q Consensus 336 ~~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~-----------~ig~~~~ig~ 401 (442)
.++.||++|.|++++.|.. .+.+|++ +.|+++|+|.++ .||+++.|+.
T Consensus 16 g~v~IG~~~~I~~~a~I~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~ 77 (164)
T cd04646 16 GDVTIGPGTVVHPRATIIAEAGPIIIGEN------------------NIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEV 77 (164)
T ss_pred CceEECCCCEEcCCeEEecCCCCeEECCC------------------CEECCCcEEecCCCCCCCCCCCeEECCCCEECC
Confidence 3677888888888887753 3666765 777777777643 3444444444
Q ss_pred CeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 402 NVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++.+. +.+||++++||.+++| ||+++.||+|++|
T Consensus 78 ~~~i~-------~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV 116 (164)
T cd04646 78 GCKCE-------ALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKL 116 (164)
T ss_pred CcEEE-------eeEECCCCEEeCCCEECCCCEECCCCEEeCCeEE
Confidence 44443 2667777777777665 7777777777754
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=100.33 Aligned_cols=95 Identities=21% Similarity=0.290 Sum_probs=70.3
Q ss_pred eeEEcCCCEEe-ceEEee----eEEcCCcEECCCCEEece----EEECCccccchhhhhhhhcCCCcceEeCCCcEeeee
Q 013483 321 DSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 391 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i~~----~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~ 391 (442)
++.||++|.|+ ++.|.. ++||++|.|+++|.|... +++|++ +.|+++|.+.++
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 79 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY------------------VTIGHNAVVHGA 79 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC------------------CEECCCcEEECc
Confidence 56777777777 555533 599999999999999864 667766 899999999999
Q ss_pred EeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 392 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 392 ~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
+||++|.|+.++.+.+ ..+++++++++.++.+ .++..|++++
T Consensus 80 ~Ig~~~~Ig~~~~i~~------~~~Ig~~~~vg~~~~v-~~g~~i~~~~ 121 (154)
T cd04650 80 KVGNYVIVGMGAILLN------GAKIGDHVIIGAGAVV-TPGKEIPDYS 121 (154)
T ss_pred EECCCCEEcCCCEEeC------CCEECCCCEECCCCEE-CCCcEeCCCC
Confidence 9999999999998865 3457777777776544 3444444433
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=99.46 Aligned_cols=95 Identities=24% Similarity=0.400 Sum_probs=73.0
Q ss_pred eeEEcCCCEEe-ceEEe----eeEEcCCcEECCCCEEece----EEECCccccchhhhhhhhcCCCcceEeCCCcEeeee
Q 013483 321 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 391 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~ 391 (442)
++.++++|.|+ .+.|. .++||++|.|++++.|.++ ++++++ +.|+.+|.|.++
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 78 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN------------------VTVGHGAVLHGC 78 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC------------------cEECCCcEEeee
Confidence 57778888877 55563 3699999999999999885 677776 899999999999
Q ss_pred EeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 392 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 392 ~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
+||++|.|++++.+.. ..+++++++|+.++.+ .+++.+++++
T Consensus 79 ~Ig~~~~Ig~~~~v~~------~~~ig~~~~ig~~~~v-~~~~~i~~~~ 120 (153)
T cd04645 79 TIGDNCLIGMGAIILD------GAVIGKGSIVAAGSLV-PPGKVIPPGS 120 (153)
T ss_pred EECCCCEECCCCEEcC------CCEECCCCEECCCCEE-CCCCEeCCCC
Confidence 9999999999999874 3467777777777544 4555555443
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.8e-11 Score=108.80 Aligned_cols=128 Identities=16% Similarity=0.209 Sum_probs=57.4
Q ss_pred CcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCC
Q 013483 300 KPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 376 (442)
Q Consensus 300 ~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 376 (442)
.++.+.+.++.++.| +++.+.+++++.++.|+ ++.| .++.||++|.||+++.|..++.+++.. ....
T Consensus 104 ~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~----------~~~~ 173 (272)
T PRK11830 104 VRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVL----------EPLQ 173 (272)
T ss_pred cEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCc----------cccC
Confidence 344444444444444 33333334444444444 2222 234445445555555554444444310 0001
Q ss_pred CcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEEcCCc
Q 013483 377 RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVITDGF 440 (442)
Q Consensus 377 ~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v~~~~ 440 (442)
..|+.||++|.|+ +|.|.++++||++++++....+.....|.+++ .|.++ |.++++|-+|+
T Consensus 174 ~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~---~g~v~~g~vp~~svvv~g~ 238 (272)
T PRK11830 174 ANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRE---TGEVHYGRVPAGSVVVPGS 238 (272)
T ss_pred cCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCC---CCcEEeeecCCCcEEecCc
Confidence 1125666666665 55555555555555555544333333333321 23333 66666665553
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.2e-11 Score=120.95 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=77.6
Q ss_pred ccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcce
Q 013483 304 TSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV 380 (442)
Q Consensus 304 ~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (442)
+.+.++..+.+ +++.|. +++||++|.|+ .+.+.+++||++|.|++++.|.++++ |++ +
T Consensus 260 ~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~i-g~~------------------~ 320 (451)
T TIGR01173 260 GTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEI-GEG------------------C 320 (451)
T ss_pred CccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccc-cCC------------------c
Confidence 33444555555 345554 47788888888 66667888888888888888877544 443 6
Q ss_pred EeCCCcEee-eeEeCCCcEECCCeEEccC-----------CCcccceeeCCCeEEccCc------------EEEcCCcEE
Q 013483 381 GIGENTKIK-ECIIDKNARIGKNVIIANS-----------EGIQEADRSAEGFYIRSGV------------TVILKNSVI 436 (442)
Q Consensus 381 ~i~~~~~i~-~~~ig~~~~ig~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~------------~vi~~~~~v 436 (442)
.||+++.|. +++||++|+||+++.+.+. ..+ ..+.||++++||.++ ++||++++|
T Consensus 321 ~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~i 399 (451)
T TIGR01173 321 DVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYL-GDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFI 399 (451)
T ss_pred EECCeeEECCCCEECCCcEEccceeecCcEECCCcEecceeeE-eeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEE
Confidence 777777776 4677766666665544321 111 135777888887764 347888888
Q ss_pred cCCccC
Q 013483 437 TDGFVI 442 (442)
Q Consensus 437 ~~~~~i 442 (442)
|.+++|
T Consensus 400 g~~~~i 405 (451)
T TIGR01173 400 GSNTQL 405 (451)
T ss_pred CCCCEE
Confidence 888753
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.2e-11 Score=104.45 Aligned_cols=82 Identities=16% Similarity=0.340 Sum_probs=55.8
Q ss_pred eeeEEcCCcEECCCCEEec---eEEECCccccchhhhhhhhcCCCcceEeCCCcEe-----eeeEeCCCcEECCCeEEcc
Q 013483 336 EHSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI-----KECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 336 ~~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-----~~~~ig~~~~ig~~~~~~~ 407 (442)
.+++||++|.|+++|+|.. .+++|++ +.||++|+| .+|+|+++|+|+.++++.+
T Consensus 25 G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~------------------t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~ 86 (192)
T TIGR02287 25 GDVILGKRCYVGPLASLRGDFGRIVLKEG------------------ANIQDNCVMHGFPGQDTVVEENGHVGHGAILHG 86 (192)
T ss_pred eeEEECCCCEECCCcEEEccCCceEECCC------------------CEECCCeEEeccCCCCCeECCCCEECCCCEEcC
Confidence 3678888888888888864 4666765 788888887 3577777777777777653
Q ss_pred CCCcccceeeCCCeEEccCcE-----EEcCCcEEcCCccC
Q 013483 408 SEGIQEADRSAEGFYIRSGVT-----VILKNSVITDGFVI 442 (442)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~~~-----vi~~~~~v~~~~~i 442 (442)
++|+++++||.+++ +||+++.|++|+.|
T Consensus 87 -------siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V 119 (192)
T TIGR02287 87 -------CIVGRNALVGMNAVVMDGAVIGENSIVAASAFV 119 (192)
T ss_pred -------CEECCCCEECCCcccCCCeEECCCCEEcCCCEE
Confidence 34555555554433 36777777777653
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.21 E-value=9e-11 Score=109.62 Aligned_cols=82 Identities=21% Similarity=0.383 Sum_probs=60.8
Q ss_pred eeeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCCCcceEeCCCcEee-----------eeEeCCCcEECC
Q 013483 336 EHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----------ECIIDKNARIGK 401 (442)
Q Consensus 336 ~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-----------~~~ig~~~~ig~ 401 (442)
.++.||++|.|+++|+|... +.+|++ +.|+++|+|. +|+||++|.||.
T Consensus 69 G~V~IG~~~~I~~gavI~g~~~~I~IG~~------------------~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~ 130 (269)
T PLN02296 69 GDVQVGRGSSIWYGCVLRGDVNSISVGSG------------------TNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGH 130 (269)
T ss_pred cceEECCCCEECCCCEEEcCCCceEECCC------------------CEECCCCEEEeCCCcccCCCCCcEeCCCCEECC
Confidence 36788888888888888764 477776 7888888884 578888888888
Q ss_pred CeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 402 NVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++++.+ ++|+++++||.+++| ||++++|++||+|
T Consensus 131 ~avI~g-------~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV 169 (269)
T PLN02296 131 SAVLHG-------CTVEDEAFVGMGATLLDGVVVEKHAMVAAGALV 169 (269)
T ss_pred CceecC-------CEECCCcEECCCcEECCCeEECCCCEECCCCEE
Confidence 887732 456666666666554 7888888887764
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=88.72 Aligned_cols=65 Identities=22% Similarity=0.495 Sum_probs=42.8
Q ss_pred EcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCC
Q 013483 324 ISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKN 402 (442)
Q Consensus 324 i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~ 402 (442)
|+++++|+ .+.+.++.||++|.|++++.|+++++..+ +.|+++|.|.+|+|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 34445554 34445677777777777777777655544 67777777777777777777777
Q ss_pred eEEcc
Q 013483 403 VIIAN 407 (442)
Q Consensus 403 ~~~~~ 407 (442)
+.+.+
T Consensus 63 ~~v~~ 67 (81)
T cd04652 63 CKLKD 67 (81)
T ss_pred CEEcc
Confidence 77753
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=100.22 Aligned_cols=96 Identities=16% Similarity=0.308 Sum_probs=56.5
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEec---eEEECCccccchhhhhhhhcCCCcceEeCCCcEe-----eeeEe
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI-----KECII 393 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-----~~~~i 393 (442)
+.|.++++|.. ++.||++|.|++++.|.+ .+.+|++ +.|+++|+| .+|+|
T Consensus 7 ~~i~~~a~i~g----~v~IG~~~~I~~~~~i~~~~~~i~IG~~------------------~~Ig~~~~I~~~~~~~~~I 64 (155)
T cd04745 7 SFVHPTAVLIG----DVIIGKNCYIGPHASLRGDFGRIVIRDG------------------ANVQDNCVIHGFPGQDTVL 64 (155)
T ss_pred eEECCCCEEEc----cEEECCCCEECCCcEEeCCCCcEEECCC------------------CEECCCCEEeecCCCCeEE
Confidence 44444444442 567777777777777765 3666765 777777777 45777
Q ss_pred CCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCcc
Q 013483 394 DKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 441 (442)
Q Consensus 394 g~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~ 441 (442)
+++|.|+.++++.+ ..+.+.+.|+.++.|+.+ .+||++++|+++++
T Consensus 65 g~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~g-~~Ig~~~~Ig~~s~ 110 (155)
T cd04745 65 EENGHIGHGAILHG-CTIGRNALVGMNAVVMDG-AVIGEESIVGAMAF 110 (155)
T ss_pred cCCCEECCCcEEEC-CEECCCCEECCCCEEeCC-CEECCCCEECCCCE
Confidence 77777777776643 223333333333333333 22566666666654
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-10 Score=97.31 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=32.7
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCc
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNS 434 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~ 434 (442)
+.|+++|.|+ ++.|.+++.||++++++....+.+..+|+++ |+|+.| +.++|
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~~~~~~~ 131 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYGRVPPGS 131 (139)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEecccCCCC
Confidence 5666666665 5666666666666666665555566666666 677666 55553
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=104.42 Aligned_cols=63 Identities=30% Similarity=0.340 Sum_probs=33.5
Q ss_pred eEeCCCcEee-eeEeC----CCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 380 VGIGENTKIK-ECIID----KNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig----~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+.|++++.|+ ++++. .++.||+++.+.+...+....+++++++|+.++.+ ||++++|+++++|
T Consensus 93 v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v 165 (205)
T cd03352 93 VIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGI 165 (205)
T ss_pred EEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEE
Confidence 4555555553 33332 23344444444443333345556666666555444 7888888887764
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=118.85 Aligned_cols=120 Identities=20% Similarity=0.311 Sum_probs=85.1
Q ss_pred ccCccCCCceec-CCcee-eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcce
Q 013483 304 TSRRNLPPSKID-DSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV 380 (442)
Q Consensus 304 ~~~~~~~~~~i~-~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (442)
+.+.+++++.+. .+.+. ++.||++|.|+ ++.|.+++||++|.|++++.|.++++..+ +
T Consensus 268 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~-------------------~ 328 (456)
T PRK14356 268 PRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG-------------------C 328 (456)
T ss_pred CCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc-------------------c
Confidence 344555555552 23332 58899999998 78888999999999999999977766444 8
Q ss_pred EeCCCcEee-eeEeCCCcEECCCeEEccCC-----Cc-----ccceeeCCCeEEccCc------------EEEcCCcEEc
Q 013483 381 GIGENTKIK-ECIIDKNARIGKNVIIANSE-----GI-----QEADRSAEGFYIRSGV------------TVILKNSVIT 437 (442)
Q Consensus 381 ~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~-----~~-----~~~~~~~~~~~i~~~~------------~vi~~~~~v~ 437 (442)
.||++|.|. +++||++|+||+++.+.+.. .+ -.+.++++++.||+++ ++||+++++|
T Consensus 329 ~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig 408 (456)
T PRK14356 329 SVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIG 408 (456)
T ss_pred EECCceEECCCCEECCCCEecCCceeeeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEc
Confidence 888888886 78888888888876554321 11 1235777888887774 2478888888
Q ss_pred CCccC
Q 013483 438 DGFVI 442 (442)
Q Consensus 438 ~~~~i 442 (442)
+++.|
T Consensus 409 ~~~~i 413 (456)
T PRK14356 409 SNTAL 413 (456)
T ss_pred CCCEE
Confidence 87753
|
|
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-10 Score=106.05 Aligned_cols=103 Identities=17% Similarity=0.290 Sum_probs=66.8
Q ss_pred cCccCCCceecCCceeeeEEcCCCEEeceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeC
Q 013483 305 SRRNLPPSKIDDSKIVDSIISHGSFITSSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 383 (442)
Q Consensus 305 ~~~~~~~~~i~~~~i~~~~i~~~~~i~~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 383 (442)
++++.|++.+.. +++|+++++|.+..+ .++.||++|.|.+++.|++++.+|++ |.|+
T Consensus 100 ~~rv~p~a~i~~----ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~n------------------v~I~ 157 (269)
T TIGR00965 100 GFRVVPGAAVRQ----GAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLS 157 (269)
T ss_pred CEEECCCcEECC----CcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCC------------------CEEc
Confidence 344555555422 466777777764444 35778888888888888888888877 6777
Q ss_pred CCcEe---------eeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 384 ENTKI---------KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 384 ~~~~i---------~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
.++.| .+++||++|.||++++|.+...+.+...|+.+++|+.++.|
T Consensus 158 ~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I 212 (269)
T TIGR00965 158 GGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKI 212 (269)
T ss_pred CCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEE
Confidence 77766 34788888888888888765444444444445555444443
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-10 Score=94.99 Aligned_cols=28 Identities=7% Similarity=0.211 Sum_probs=17.7
Q ss_pred eeeCCCeEEccCcEE---EcCCcEEcCCccC
Q 013483 415 DRSAEGFYIRSGVTV---ILKNSVITDGFVI 442 (442)
Q Consensus 415 ~~~~~~~~i~~~~~v---i~~~~~v~~~~~i 442 (442)
..||+++|||.+++| ||++++||+|++|
T Consensus 74 V~IG~~~~IG~ga~Igv~IG~~~vIGaGsvV 104 (147)
T cd04649 74 ISIGKRCLLGANSGIGISLGDNCIVEAGLYV 104 (147)
T ss_pred EEECCCCEECCCCEEeEEECCCCEECCCCEE
Confidence 566666666666655 6666666666653
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=106.39 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=26.7
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEc
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIA 406 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~ 406 (442)
.+.||+++.|++++.|+..+.+|++ +.|++++.|. +|+||++|.||+++++.
T Consensus 98 ~v~IG~~~~I~~~~~I~~~~~IG~~------------------~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~ 150 (231)
T TIGR03532 98 QVIIGDNAVIMMGAVINIGAEIGEG------------------TMIDMNAVLGGRATVGKNVHIGAGAVLA 150 (231)
T ss_pred CeEECCCCEEecCcccCCCeEECCC------------------CEEccccccCCCcEECCCcEEcCCcEEc
Confidence 3455555555555555554555544 4555555553 45555555555555554
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.6e-10 Score=104.22 Aligned_cols=93 Identities=15% Similarity=0.234 Sum_probs=65.7
Q ss_pred eeEEcCCCEEeceEEeeeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCCCcceEeCCCcEee--------
Q 013483 321 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------- 389 (442)
Q Consensus 321 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-------- 389 (442)
++.|.+++.+. .++.||+++.|+++++|... +.+|.+ +.|+++|+|.
T Consensus 65 ~~~I~p~a~i~----G~V~Ig~~a~I~~gavirgd~~~I~IG~~------------------t~Ig~~~vI~~~~~~~~~ 122 (246)
T PLN02472 65 DAYVAPNVVLA----GQVTVWDGASVWNGAVLRGDLNKITVGFC------------------SNVQERCVLHAAWNSPTG 122 (246)
T ss_pred CCEECCCCEEe----cCEEECCCCEEcCCCEEecCCcceEECCC------------------CEECCCCEEeecCccccC
Confidence 34555555544 36889999999999988664 778876 8899999883
Q ss_pred ---eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 390 ---ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 390 ---~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+++||++|+||.++++.+ ++|+++++||.+++| ||++++|++|++|
T Consensus 123 i~~~tvIG~~v~IG~~s~L~~-------~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV 176 (246)
T PLN02472 123 LPAETLIDRYVTIGAYSLLRS-------CTIEPECIIGQHSILMEGSLVETHSILEAGSVL 176 (246)
T ss_pred CCCCcEECCCCEECCCcEECC-------eEEcCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence 588888888888888742 355555555555443 6777777777653
|
|
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.8e-10 Score=94.63 Aligned_cols=93 Identities=18% Similarity=0.334 Sum_probs=52.3
Q ss_pred eEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee---------e
Q 013483 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK---------E 390 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~---------~ 390 (442)
+.|++++.|. .+.+ .++.||+++.|++++.|++++.+|++ |.|++++.|+ +
T Consensus 14 ~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~------------------~~I~~~~~igg~~~~~~~~~ 75 (139)
T cd03350 14 AFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKN------------------VHLSAGAVIGGVLEPLQATP 75 (139)
T ss_pred CEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCC------------------CEECCCCEECCcccccccCC
Confidence 3344444444 2233 24556666666666666666666655 6666666664 3
Q ss_pred eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCcc
Q 013483 391 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFV 441 (442)
Q Consensus 391 ~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~ 441 (442)
++|+++|.|++++++.... +|++++.|+++++| |+++ |+|++
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv------~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~ 122 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGV------IVGKGAVLAAGVVLTQSTPIYDR---ETGEI 122 (139)
T ss_pred eEECCCCEECCCCEECCCC------EECCCCEEcCCCEEcCCeEeccc---CcccE
Confidence 6777777777777776543 44444444444443 4554 55554
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-10 Score=100.68 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=33.4
Q ss_pred cCCCCcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEec
Q 013483 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD 354 (442)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~ 354 (442)
+++.+.+. .+.+++++.| .++.+.++.||+++.|+ .+.+.+++||++|.|++++.|..
T Consensus 11 I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 11 LHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred ECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 33444442 2445555555 44555566666666666 55556666666666666666654
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-10 Score=86.42 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=65.6
Q ss_pred CCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCc
Q 013483 309 LPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENT 386 (442)
Q Consensus 309 ~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 386 (442)
++++.+ +++.+.++.|+++|.|+ .+.+.+++|++++.|++++.|.++++..+ +.|++++
T Consensus 3 g~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~~ 63 (81)
T cd04652 3 GENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEKC 63 (81)
T ss_pred cCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCCC
Confidence 445555 45566678899999998 78888999999999999999999888766 9999999
Q ss_pred EeeeeEeCCCcEECCCe
Q 013483 387 KIKECIIDKNARIGKNV 403 (442)
Q Consensus 387 ~i~~~~ig~~~~ig~~~ 403 (442)
.+.+|+||++++|++++
T Consensus 64 ~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 64 KLKDCLVGSGYRVEAGT 80 (81)
T ss_pred EEccCEECCCcEeCCCC
Confidence 99999999999999875
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-10 Score=116.74 Aligned_cols=118 Identities=16% Similarity=0.235 Sum_probs=81.3
Q ss_pred cCccCCCcee-cCCcee-eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceE
Q 013483 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 381 (442)
Q Consensus 305 ~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (442)
.+.++.++.| +++.|. ++.||++|.|+ .+.|.+|+||++|.|++++.|+++ ++|++ +.
T Consensus 265 ~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~-~ig~~------------------~~ 325 (456)
T PRK09451 265 TLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDA-NLGAA------------------CT 325 (456)
T ss_pred cEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCC-ccCCC------------------cE
Confidence 3445556666 455554 58899999998 777788999999999999999865 44554 66
Q ss_pred eCCCcEee-eeEeCCCcEECCCeEEcc-----------CCCcccceeeCCCeEEccCc------------EEEcCCcEEc
Q 013483 382 IGENTKIK-ECIIDKNARIGKNVIIAN-----------SEGIQEADRSAEGFYIRSGV------------TVILKNSVIT 437 (442)
Q Consensus 382 i~~~~~i~-~~~ig~~~~ig~~~~~~~-----------~~~~~~~~~~~~~~~i~~~~------------~vi~~~~~v~ 437 (442)
||+++.|. +++|+++++||+++.+.+ ...+ +.+.||++++||+++ ++||++++||
T Consensus 326 Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig 404 (456)
T PRK09451 326 IGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYL-GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVG 404 (456)
T ss_pred ecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccc-cccEECCCCEEcCCeEEecccCcccCCCEECCCcEEC
Confidence 66666665 566666666665544432 1111 235788888888875 3489999999
Q ss_pred CCccC
Q 013483 438 DGFVI 442 (442)
Q Consensus 438 ~~~~i 442 (442)
.+++|
T Consensus 405 ~~~~i 409 (456)
T PRK09451 405 SDTQL 409 (456)
T ss_pred CCCEE
Confidence 88764
|
|
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.7e-10 Score=98.47 Aligned_cols=130 Identities=20% Similarity=0.172 Sum_probs=81.3
Q ss_pred cccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCC
Q 013483 301 PIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 376 (442)
Q Consensus 301 ~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 376 (442)
.+++++.|++++.+ +++.|. -|+|+++++|+ .+.+ .+++|-..++||.++.|.+...+|. .++-.+....++
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~----~pQdlKykge~T 80 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGE----DPQDLKYKGEPT 80 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCC----CCcccccCCCce
Confidence 34555555555555 344443 27777777777 5555 5677777788888888888888876 355555555555
Q ss_pred CcceEeCCCcEee--------------eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEc
Q 013483 377 RVPVGIGENTKIK--------------ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVIT 437 (442)
Q Consensus 377 ~~~~~i~~~~~i~--------------~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~ 437 (442)
+ +.||++|.|. -+.||+|+.+=+++-++ -.|+||+++.+--++++ ||+.+++|
T Consensus 81 ~--l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVA------HDC~iGn~~ilaNnatLAGHV~igD~aiiG 152 (260)
T COG1043 81 R--LIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVA------HDCVIGNNCILANNATLAGHVEVGDYAIIG 152 (260)
T ss_pred E--EEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeee------ccceecCcEEEecCCeEeccEEECCEEEEc
Confidence 5 8999999992 24444444444444444 34455555555555444 78888888
Q ss_pred CCccC
Q 013483 438 DGFVI 442 (442)
Q Consensus 438 ~~~~i 442 (442)
.+|-|
T Consensus 153 G~saV 157 (260)
T COG1043 153 GLSAV 157 (260)
T ss_pred CcceE
Confidence 87743
|
|
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=106.09 Aligned_cols=109 Identities=10% Similarity=0.127 Sum_probs=77.3
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (442)
.+.+||||||+|+||+ .+|+|+|+.|+ ||++|+++.|... +++++|+++... ... +.. ..
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~---~~~----~~~-~~----- 219 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ---WQG----TPL-EN----- 219 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH---hhh----ccc-cC-----
Confidence 6789999999999997 69999999999 9999999888765 788888875321 111 000 00
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHH
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNH 152 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~ 152 (442)
+.++..... ..|...+|+.++..... +.+++++||+ ++..+ +..+++.+
T Consensus 220 --v~~I~D~~~--------~~GPlagI~aaL~~~~~------~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 220 --LPTLPDRGE--------SVGPISGILTALQSYPG------VNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred --CeEEeCCCC--------CCChHHHHHHHHHhCCC------CCEEEEECCcCCCCHHHHHHHHHhh
Confidence 222222221 25899999999887652 5789999999 55555 56666654
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-10 Score=115.97 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=36.5
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEE-----ccCCCcc-----cceeeCCCeEEccCc------------EEEcCCcEE
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVII-----ANSEGIQ-----EADRSAEGFYIRSGV------------TVILKNSVI 436 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~-----~~~~~~~-----~~~~~~~~~~i~~~~------------~vi~~~~~v 436 (442)
+.||++|.+. +++||+++.||.++.+ +....++ ...+||++++||.++ ++||+++.|
T Consensus 329 ~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~i 408 (482)
T PRK14352 329 ATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRT 408 (482)
T ss_pred CEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEE
Confidence 5566666664 5666666655543322 2111111 234677888888775 347888888
Q ss_pred cCCccC
Q 013483 437 TDGFVI 442 (442)
Q Consensus 437 ~~~~~i 442 (442)
|.+++|
T Consensus 409 G~~~~i 414 (482)
T PRK14352 409 GSDTMF 414 (482)
T ss_pred CCCCEE
Confidence 887764
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=97.87 Aligned_cols=84 Identities=20% Similarity=0.321 Sum_probs=48.8
Q ss_pred eEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcE
Q 013483 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNAR 398 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ 398 (442)
+.|++++.|+ ++.| .+++||++|.|++++.|++.+.+|++ +.|+.++.|. ++.|+++|.
T Consensus 100 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~------------------~~i~~~~~i~~~~~ig~~~~ 161 (201)
T TIGR03570 100 ASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDY------------------VHIAPGVTLSGGVVIGEGVF 161 (201)
T ss_pred CEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCC------------------CEECCCCEEeCCcEECCCCE
Confidence 3344444444 3333 24666666666666666655555554 5666666665 566666666
Q ss_pred ECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 399 IGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 399 ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
||.++++. +...++++++|++++++
T Consensus 162 ig~~~~v~------~~~~i~~~~~i~~~~~v 186 (201)
T TIGR03570 162 IGAGATII------QGVTIGAGAIVGAGAVV 186 (201)
T ss_pred ECCCCEEe------CCCEECCCCEECCCCEE
Confidence 66666554 34566777777777665
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=95.12 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=83.0
Q ss_pred ccCCCCcccccCccCCCcee-cCCcee-----eeEEcCCCEEe-ceEEe-----eeEEcCCcEECCCCEEeceEEECCcc
Q 013483 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-----DSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKDTMMLGADF 362 (442)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i-~~~~i~-----~~~i~~~~~i~-~~~i~-----~~~ig~~~~i~~~~~i~~~~~~~~~~ 362 (442)
.+++.+.+..++.++..+.| +++.+. ++.||++|.|+ .+.+. .+.||+++.|++++.|..++.+|++
T Consensus 10 ~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~- 88 (167)
T cd00710 10 YVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN- 88 (167)
T ss_pred EECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC-
Confidence 45566666666777777777 455553 37899999998 66662 5889999999999999998899987
Q ss_pred ccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccC
Q 013483 363 YETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSG 426 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~ 426 (442)
+.||.+|.|.++.||++|.||+++.+.+ ..++++..++++
T Consensus 89 -----------------~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~-------~~i~~~~~v~~~ 128 (167)
T cd00710 89 -----------------CFIGFRSVVFNAKVGDNCVIGHNAVVDG-------VEIPPGRYVPAG 128 (167)
T ss_pred -----------------CEECCCCEEECCEECCCCEEcCCCEEeC-------CEeCCCCEECCC
Confidence 9999999999999999999999998842 244555555444
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5e-10 Score=114.18 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=62.4
Q ss_pred eEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhh-hhhhhcCCCcceEeCCCcEee-eeEeCCCc
Q 013483 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAE-VASLLAEGRVPVGIGENTKIK-ECIIDKNA 397 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~ 397 (442)
+.||+++.|+ ++.| .++.||++|.|+++++|.++ ++|+++++.... ..+...++ +.||+++.|. +++||++|
T Consensus 256 ~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s-~Ig~~~~I~~~~v~~sii~~~---~~ig~~~~i~~~~~ig~~~ 331 (448)
T PRK14357 256 VEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDC-EIGNNVKIIRSECEKSVIEDD---VSVGPFSRLREGTVLKKSV 331 (448)
T ss_pred eEECCCcEEcCCcEEEeeeEECCCcEECCCceeccc-EECCCCEEeeeEEEEEEEeCC---cEECCCcEECCcccccCCc
Confidence 3444444444 3333 34555555555555555442 333333332110 01111111 6777777775 57888888
Q ss_pred EECCCeEEccC-----CCcc-----cceeeCCCeEEccCc------------EEEcCCcEEcCCccC
Q 013483 398 RIGKNVIIANS-----EGIQ-----EADRSAEGFYIRSGV------------TVILKNSVITDGFVI 442 (442)
Q Consensus 398 ~ig~~~~~~~~-----~~~~-----~~~~~~~~~~i~~~~------------~vi~~~~~v~~~~~i 442 (442)
+||+++.+.+. ..+. ...+||++++||+|+ ++||++++||++++|
T Consensus 332 ~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i 398 (448)
T PRK14357 332 KIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSL 398 (448)
T ss_pred EecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEE
Confidence 88877655331 1111 134788888888764 347888888887653
|
|
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-09 Score=93.45 Aligned_cols=94 Identities=21% Similarity=0.276 Sum_probs=62.0
Q ss_pred eEEcCCCEEe-ceEE----eeeEEcCCcEECCCCEEeceE------------EECCccccchhhhhhhhcCCCcceEeCC
Q 013483 322 SIISHGSFIT-SSFI----EHSVVGIRSRINANVHLKDTM------------MLGADFYETDAEVASLLAEGRVPVGIGE 384 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i----~~~~ig~~~~i~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 384 (442)
..+++++.|. ++.+ ..++||++|.|++++.|.++. .+|++ +.|++
T Consensus 22 I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~------------------~~Ig~ 83 (161)
T cd03359 22 IVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDY------------------VFIGE 83 (161)
T ss_pred EEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCc------------------cEECC
Confidence 3444444444 3333 247899999999999998653 44444 78888
Q ss_pred CcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 385 NTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 385 ~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
+|.+.++.|++++.||++++++.. .+++++++|++++.| ++++.|++++
T Consensus 84 ~~~i~~~~Ig~~v~Ig~~~~Ig~~------~~I~~~~~i~~g~~V-~~~~~i~~~~ 132 (161)
T cd03359 84 NCVVNAAQIGSYVHIGKNCVIGRR------CIIKDCVKILDGTVV-PPDTVIPPYS 132 (161)
T ss_pred CCEEEeeEEcCCcEECCCCEEcCC------CEECCCcEECCCCEE-CCCCEeCCCC
Confidence 888888889999999999888763 455555555555332 4444444443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=112.01 Aligned_cols=138 Identities=20% Similarity=0.157 Sum_probs=88.2
Q ss_pred CCCCcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhh-h-h--
Q 013483 297 DATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE-V-A-- 370 (442)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~-~-~-- 370 (442)
.+...+.+.+.++..+.| .++.|.+++|+++|+|+ .+.+.+++||+++.|++++.+.+.+.++++..+.+.. . .
T Consensus 278 ~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ 357 (459)
T PRK14355 278 YPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIV 357 (459)
T ss_pred eCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCE
Confidence 334445555566666666 56677788899999988 6677788888888877666665544444433332211 0 0
Q ss_pred ---------hhhcCCCcceEeCCCcEee-eeEeC-------CCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---E
Q 013483 371 ---------SLLAEGRVPVGIGENTKIK-ECIID-------KNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---I 430 (442)
Q Consensus 371 ---------~~~~~~~~~~~i~~~~~i~-~~~ig-------~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i 430 (442)
.....+ +.||++|.|+ ++++. ..+.||++|.++....+....+||++++|++|+.| |
T Consensus 358 ig~~~~~~~~~~ig~---~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~~v 434 (459)
T PRK14355 358 MGEGSKASHLTYLGD---ATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTKDV 434 (459)
T ss_pred ECCCceeeeeccccC---CEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcccC
Confidence 011112 6888888886 45542 34667777777766666677899999999999887 6
Q ss_pred cCCcEEc
Q 013483 431 LKNSVIT 437 (442)
Q Consensus 431 ~~~~~v~ 437 (442)
.+++.+.
T Consensus 435 ~~~~~~~ 441 (459)
T PRK14355 435 PPDSLAI 441 (459)
T ss_pred CCCcEEE
Confidence 6666554
|
|
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.3e-10 Score=83.63 Aligned_cols=65 Identities=35% Similarity=0.589 Sum_probs=49.9
Q ss_pred EcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCC
Q 013483 324 ISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKN 402 (442)
Q Consensus 324 i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~ 402 (442)
|++++.|+ .+.+.+++||++|.|++++.|+++++..+ +.|+++|.|.+|+|+++|.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 45555555 45555688888888888888888777665 78888888888888888888888
Q ss_pred eEEcc
Q 013483 403 VIIAN 407 (442)
Q Consensus 403 ~~~~~ 407 (442)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd03356 63 VRVVN 67 (79)
T ss_pred CEEcC
Confidence 87764
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-09 Score=93.01 Aligned_cols=91 Identities=18% Similarity=0.326 Sum_probs=59.6
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCCCcceEeCCCcEeee-----eEe
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-----CII 393 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-----~~i 393 (442)
++|+++|+|.+ ++.||+++.|+++++|..+ +++|++ +.|+++|.|.+ ++|
T Consensus 6 ~~i~~~a~i~g----~v~ig~~~~I~~~~~I~~~~~~~~IG~~------------------~~I~~~~~I~~~~~~~~~I 63 (153)
T cd04645 6 AFIAPNATVIG----DVTLGEGSSVWFGAVLRGDVNPIRIGER------------------TNIQDGSVLHVDPGYPTII 63 (153)
T ss_pred eEECCCCEEEE----eEEECCCcEEcCCeEEECCCCceEECCC------------------CEECCCcEEecCCCCCeEE
Confidence 45555555542 5778888888888877654 466665 77777777765 578
Q ss_pred CCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCcc
Q 013483 394 DKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFV 441 (442)
Q Consensus 394 g~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~ 441 (442)
|++|.|+.++++.+ ..++++++|+.++.+ |++++.|+++++
T Consensus 64 g~~~~I~~~~~i~~-------~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~ 109 (153)
T cd04645 64 GDNVTVGHGAVLHG-------CTIGDNCLIGMGAIILDGAVIGKGSIVAAGSL 109 (153)
T ss_pred cCCcEECCCcEEee-------eEECCCCEECCCCEEcCCCEECCCCEECCCCE
Confidence 88888888777753 345555555554443 567777766654
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.6e-10 Score=112.16 Aligned_cols=63 Identities=30% Similarity=0.307 Sum_probs=43.9
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCCC----------cccceeeCCCeEEccCcE------------EEcCCcEE
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSEG----------IQEADRSAEGFYIRSGVT------------VILKNSVI 436 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~----------~~~~~~~~~~~~i~~~~~------------vi~~~~~v 436 (442)
+.|+++|.|. +|+||++|.||+++.+.+... .-.+..|++++.||.++. +||++++|
T Consensus 320 ~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~i 399 (450)
T PRK14360 320 VKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKT 399 (450)
T ss_pred cEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEe
Confidence 7888888886 688888888888877754210 112346788888887743 47888888
Q ss_pred cCCccC
Q 013483 437 TDGFVI 442 (442)
Q Consensus 437 ~~~~~i 442 (442)
|++++|
T Consensus 400 G~~~~i 405 (450)
T PRK14360 400 GANSVL 405 (450)
T ss_pred CCCCEE
Confidence 888754
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.7e-10 Score=112.56 Aligned_cols=100 Identities=26% Similarity=0.434 Sum_probs=72.1
Q ss_pred eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcE
Q 013483 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 398 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ 398 (442)
+.+-++++++. .+.+ .+++||.++.||.|+.|.|+++ |++ |.||+||.|.+|.|++||+
T Consensus 315 ~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVI-G~~------------------c~IgsN~~I~~S~iw~~v~ 375 (673)
T KOG1461|consen 315 NIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVI-GAN------------------CRIGSNVRIKNSFIWNNVT 375 (673)
T ss_pred ccccCccceehhhccccceEEecccccccCCCeeeccee-cCC------------------CEecCceEEeeeeeecCcE
Confidence 35556677766 4444 5889999999999999999977 655 9999999999999999999
Q ss_pred ECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCcc
Q 013483 399 IGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 441 (442)
Q Consensus 399 ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~ 441 (442)
||.||.|.+ ..+.+..+|++|+.+..| .|||-+++||++.+
T Consensus 376 Igdnc~I~~-aii~d~v~i~~~~~l~~g-~vl~~~VVv~~~~~ 416 (673)
T KOG1461|consen 376 IGDNCRIDH-AIICDDVKIGEGAILKPG-SVLGFGVVVGRNFV 416 (673)
T ss_pred ECCCceEee-eEeecCcEeCCCcccCCC-cEEeeeeEeCCCcc
Confidence 999999963 333333344444444444 23566666666554
|
|
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=92.99 Aligned_cols=80 Identities=19% Similarity=0.307 Sum_probs=48.3
Q ss_pred eeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCCCcceEeCCCcEeee-----eEeCCCcEECCCeEEccC
Q 013483 337 HSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-----CIIDKNARIGKNVIIANS 408 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-----~~ig~~~~ig~~~~~~~~ 408 (442)
+++||++|.|++++.|..+ +++|++ +.|+++|.|.. ++||+++.|+.++.+.+
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~------------------~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~- 78 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKY------------------SNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHG- 78 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCC------------------CEECCCCEEEeCCCCCeEECCCCEECCCcEEEC-
Confidence 5667777777777777665 566655 67777777753 66777777777766643
Q ss_pred CCcccceeeCCCeEEccCcEE-----EcCCcEEcCCcc
Q 013483 409 EGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFV 441 (442)
Q Consensus 409 ~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~ 441 (442)
.+++++++|+.++.+ ||+++.|++++.
T Consensus 79 ------~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~ 110 (154)
T cd04650 79 ------AKVGNYVIVGMGAILLNGAKIGDHVIIGAGAV 110 (154)
T ss_pred ------cEECCCCEEcCCCEEeCCCEECCCCEECCCCE
Confidence 234444444444332 566666666654
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.7e-09 Score=100.50 Aligned_cols=217 Identities=18% Similarity=0.257 Sum_probs=125.3
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeec---CccceehhhhhhhhhcC-----------CcEEEEEec-cChhhHH
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINSG-----------INKVYILTQ-YNSASLN 70 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~---g~~pli~~~l~~l~~~g-----------i~~i~iv~~-~~~~~i~ 70 (442)
..++.+||||||+||||. ...||+|+|++ |+ |++++.++++.+.+ .-.++|.++ +.++.+.
T Consensus 13 ~~~va~viLaGG~GTRLg---~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~ 88 (323)
T cd04193 13 EGKVAVLLLAGGQGTRLG---FDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETR 88 (323)
T ss_pred cCCEEEEEECCCcccccC---CCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHH
Confidence 468999999999999994 88899999998 68 99999999998842 235567777 6677889
Q ss_pred HHHHhhccCCCC---ccc-CCceEEEeccccc----CCcCCCccccChHHHHHHhhh--hhcCCCCCccCeEEEEcCCee
Q 013483 71 RHLARAYNYGSG---VTF-GDGCVEVLAATQT----PGEAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHL 140 (442)
Q Consensus 71 ~~~~~~~~~~~~---~~~-~~~~v~i~~~~~~----~~~~~~~~~~G~~~al~~~~~--~l~~~~~~~~~~~lv~~gD~i 140 (442)
+++++...|+-. ..+ ....+..+..+.. ....-...|.|.++....... .++++...+.+++.+.+.|.+
T Consensus 89 ~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~ 168 (323)
T cd04193 89 KFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNI 168 (323)
T ss_pred HHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcc
Confidence 998764323211 110 0111111110000 001112235677777655432 344333344689999999995
Q ss_pred ee-cCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcCCCc--eEEEEeCCCcccccccccccccccccccccccc
Q 013483 141 YR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEK 217 (442)
Q Consensus 141 ~~-~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~--v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (442)
.. ..--.++-.+...+.++.+-+.+...+ .+.-|.++.. +|+ +.++.+-|....... + ....+ .
T Consensus 169 L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~-~ekvG~l~~~-~g~~~vvEysel~~~~~~~~---~------~~g~l--~ 235 (323)
T cd04193 169 LVKVADPVFIGFCISKGADVGAKVVRKRYP-TEKVGVVVLV-DGKPQVVEYSEISDELAEKR---D------ADGEL--Q 235 (323)
T ss_pred cccccCHHHhHHHHHcCCceEEEEEECCCC-CCceeEEEEE-CCeEEEEEeecCCHHHHhcc---C------cCCcE--e
Confidence 43 333466777888899988877665532 2344555542 444 444444333221100 0 00000 0
Q ss_pred cceeeeeEEEEeHHHHHHHHhh
Q 013483 218 PYIASMGVYLFKKEILLNLLRW 239 (442)
Q Consensus 218 ~~l~~~Giy~~~~~~l~~~l~~ 239 (442)
-+..++.+.+|+.+++.++++.
T Consensus 236 f~~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 236 YNAGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred cccchHhhheeCHHHHHHHHhh
Confidence 1223556778888888776543
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-09 Score=101.87 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=22.1
Q ss_pred eeeCCCeEEccCcEE---EcCCcEEcCCccC
Q 013483 415 DRSAEGFYIRSGVTV---ILKNSVITDGFVI 442 (442)
Q Consensus 415 ~~~~~~~~i~~~~~v---i~~~~~v~~~~~i 442 (442)
+.||++++||.|++| ||++++||+|++|
T Consensus 251 V~IGe~~lIGagA~IGI~IGd~~iIGAGavV 281 (341)
T TIGR03536 251 ISVGEGCLLGANAGIGIPLGDRCTVEAGLYI 281 (341)
T ss_pred EEECCCcEECCCCEEeeEECCCCEECCCCEE
Confidence 678888888888776 8888888888764
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=110.90 Aligned_cols=116 Identities=26% Similarity=0.269 Sum_probs=73.8
Q ss_pred CccCCCceecCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCC
Q 013483 306 RRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGE 384 (442)
Q Consensus 306 ~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 384 (442)
+.|++++.|+++.+.+++||++|.|+ ++.|.+|+||++|.|++ +.| +.+.+|+..++.+ +.||+
T Consensus 283 ~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~-~~~-~~~~i~~~~~i~d-------------~~Ig~ 347 (430)
T PRK14359 283 SHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKN-AKL-NGVKAGHLSYLGD-------------CEIDE 347 (430)
T ss_pred eEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcc-cEe-ccccccccccccC-------------CEECC
Confidence 34455555555566678888888888 66677788888886664 223 3333343322211 67777
Q ss_pred CcEee-eeEeCC-------CcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 385 NTKIK-ECIIDK-------NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 385 ~~~i~-~~~ig~-------~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
+|.|+ +++++. .++||++|.++....+....+||++++||+|++| +.+++.+
T Consensus 348 ~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~ 410 (430)
T PRK14359 348 GTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGSLA 410 (430)
T ss_pred CCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccCCCcEE
Confidence 77776 444432 2556666666655555567899999999999888 5555554
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-09 Score=96.82 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=42.7
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccce
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEAD 415 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~ 415 (442)
++.||++|.|++++.|++.+.+|++ +.|+.+|.+. +++||++|.||.++++.. ..
T Consensus 114 ~~~ig~~~~i~~~~~i~~~~~ig~~------------------~~i~~~~~i~~~~~ig~~~~ig~~~~v~~------~~ 169 (197)
T cd03360 114 DARIGDNVIINTGAVIGHDCVIGDF------------------VHIAPGVVLSGGVTIGEGAFIGAGATIIQ------GV 169 (197)
T ss_pred CCEECCCeEECCCCEECCCCEECCC------------------CEECCCCEEcCCcEECCCCEECCCCEEcC------CC
Confidence 4566666666666666555555554 5666666664 466666666666666543 45
Q ss_pred eeCCCeEEccCcEE
Q 013483 416 RSAEGFYIRSGVTV 429 (442)
Q Consensus 416 ~~~~~~~i~~~~~v 429 (442)
++++++.|+++++|
T Consensus 170 ~ig~~~~v~~~~~v 183 (197)
T cd03360 170 TIGAGAIIGAGAVV 183 (197)
T ss_pred EECCCCEECCCCEE
Confidence 57777777777666
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=86.10 Aligned_cols=61 Identities=20% Similarity=0.394 Sum_probs=52.7
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECC
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 401 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~ 401 (442)
+.|++++.| ++++||++|.|+ ++.|.+++++.+ +.|+++|.|.+|+|++++.||+
T Consensus 2 ~~i~~~~~i-----~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~ 56 (104)
T cd04651 2 PYIGRRGEV-----KNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGR 56 (104)
T ss_pred ceecCCCEE-----EeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECC
Confidence 345555554 489999999999 999999988776 9999999999999999999999
Q ss_pred CeEEcc
Q 013483 402 NVIIAN 407 (442)
Q Consensus 402 ~~~~~~ 407 (442)
++.+.+
T Consensus 57 ~~~i~~ 62 (104)
T cd04651 57 NAVIRR 62 (104)
T ss_pred CCEEEe
Confidence 999964
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-09 Score=88.84 Aligned_cols=83 Identities=22% Similarity=0.204 Sum_probs=52.9
Q ss_pred eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcE
Q 013483 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 398 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ 398 (442)
+++|+++|.|+ ++.+ .+++||++|.|++++.+.+....+. .+..++.+.+++||++|.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~Ig~~~~ 75 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRS--------------------KIYRKWELKGTTVKRGAS 75 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCcc--------------------ccccccccCCcEECCCcE
Confidence 46677777776 4444 3567777777777776666544332 344566677888888888
Q ss_pred ECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 399 IGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 399 ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
||+++++.+ ...+++++.|++++.+
T Consensus 76 Ig~~~~v~~------~~~ig~~~~i~~~~~v 100 (119)
T cd03358 76 IGANATILP------GVTIGEYALVGAGAVV 100 (119)
T ss_pred ECcCCEEeC------CcEECCCCEEccCCEE
Confidence 888887754 2345666666666554
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.3e-09 Score=98.65 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=64.8
Q ss_pred ccccCccCCCceecCCceeeeEEcCCCEEeceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcce
Q 013483 302 IYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV 380 (442)
Q Consensus 302 ~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (442)
...++.+.|++++.. +++|+++++|.+..+ .++.||++|.|+.++.|++++.+|++ +
T Consensus 100 ~~~~~rI~p~a~V~~----ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~n------------------v 157 (272)
T PRK11830 100 KEAGVRVVPGAVVRR----GAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------V 157 (272)
T ss_pred ccCCcEEcCCeEECC----CCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCC------------------c
Confidence 345566666666533 466777777765444 35677777777777777777777776 7
Q ss_pred EeCCCcEee---------eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccC
Q 013483 381 GIGENTKIK---------ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSG 426 (442)
Q Consensus 381 ~i~~~~~i~---------~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~ 426 (442)
.|++++.|+ +++||++|.||.++++.... +||+++.||.|
T Consensus 158 ~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv------~IGdgavIgag 206 (272)
T PRK11830 158 HLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGV------IVEEGSVLGMG 206 (272)
T ss_pred EECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCC------EECCCCEEcCC
Confidence 777777775 37888888888888886543 44444444444
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-09 Score=110.35 Aligned_cols=63 Identities=22% Similarity=0.311 Sum_probs=37.8
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCC-----Cc-----ccceeeCCCeEEccCcE------------EEcCCcEE
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSE-----GI-----QEADRSAEGFYIRSGVT------------VILKNSVI 436 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~-----~~-----~~~~~~~~~~~i~~~~~------------vi~~~~~v 436 (442)
+.||++|.|. +++||++|+|++++.+.+.. .+ -...+|++++.||+++. +||++++|
T Consensus 323 ~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~i 402 (458)
T PRK14354 323 VTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFI 402 (458)
T ss_pred cEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEE
Confidence 5666666665 56666777666666553211 00 12246667777776643 36888888
Q ss_pred cCCccC
Q 013483 437 TDGFVI 442 (442)
Q Consensus 437 ~~~~~i 442 (442)
|++++|
T Consensus 403 g~~s~i 408 (458)
T PRK14354 403 GCNSNL 408 (458)
T ss_pred ccCCEE
Confidence 887753
|
|
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-09 Score=81.26 Aligned_cols=64 Identities=28% Similarity=0.456 Sum_probs=44.5
Q ss_pred cCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCe
Q 013483 325 SHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNV 403 (442)
Q Consensus 325 ~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~ 403 (442)
++++.|+ .+.+.+++||++|.|++++.|.++++..+ +.|++++.|.+++|++++.|++++
T Consensus 3 g~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~~ 63 (79)
T cd05787 3 GRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKGC 63 (79)
T ss_pred cCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCCC
Confidence 4444444 34444677888888888888877666554 788888888878877777777777
Q ss_pred EEcc
Q 013483 404 IIAN 407 (442)
Q Consensus 404 ~~~~ 407 (442)
.+..
T Consensus 64 ~i~~ 67 (79)
T cd05787 64 TIPP 67 (79)
T ss_pred EECC
Confidence 6653
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-09 Score=98.64 Aligned_cols=83 Identities=12% Similarity=0.208 Sum_probs=56.1
Q ss_pred eeEEcCCcEECCCCEEeceE-EECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccc
Q 013483 337 HSVVGIRSRINANVHLKDTM-MLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEA 414 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~ 414 (442)
...||+++.|.+++.|..++ .+|+ ..| ++.|. +|+||++|+|+.++.|... +...
T Consensus 165 GAyLGeGtvVm~~a~VN~nAgtIG~-------------------~iI--~g~I~HdvvIGd~~~IgpGvsI~G~--LsGg 221 (319)
T TIGR03535 165 GAHLAEGTTVMHEGFVNFNAGTLGA-------------------SMV--EGRISAGVVVGDGSDIGGGASIMGT--LSGG 221 (319)
T ss_pred ccEECCCCEEcCCCEEccCceEecC-------------------ceE--EEEEccCCEECCCCEECCCceecce--ecCC
Confidence 45666666666666666666 4565 233 34454 5666677777777775541 2233
Q ss_pred ----eeeCCCeEEccCcEE---EcCCcEEcCCccC
Q 013483 415 ----DRSAEGFYIRSGVTV---ILKNSVITDGFVI 442 (442)
Q Consensus 415 ----~~~~~~~~i~~~~~v---i~~~~~v~~~~~i 442 (442)
+.||++++||.|++| ||++++||+|++|
T Consensus 222 ~~~pV~IGe~~~IGagA~IGI~IGd~~VVGAGaVV 256 (319)
T TIGR03535 222 GKEVISIGERCLLGANSGLGISLGDDCVVEAGLYV 256 (319)
T ss_pred CcccEEECCCcEECCCCEECeEECCCCEECCCCEE
Confidence 689999999999887 9999999999875
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.4e-09 Score=92.44 Aligned_cols=12 Identities=33% Similarity=0.393 Sum_probs=6.9
Q ss_pred EcCCcEEcCCcc
Q 013483 430 ILKNSVITDGFV 441 (442)
Q Consensus 430 i~~~~~v~~~~~ 441 (442)
||++++|+++|+
T Consensus 171 ig~~~~v~~~~~ 182 (197)
T cd03360 171 IGAGAIIGAGAV 182 (197)
T ss_pred ECCCCEECCCCE
Confidence 556666665554
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-09 Score=87.99 Aligned_cols=63 Identities=25% Similarity=0.315 Sum_probs=33.6
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCCCc---------ccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGI---------QEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+.|++++.|+ +|+||++|.|++++.+.+.... -...+|+++++||.++.+ ||+++.|++++++
T Consensus 23 ~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v 100 (119)
T cd03358 23 VKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVV 100 (119)
T ss_pred cEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeCCcEECCCCEEccCCEE
Confidence 4444444442 3444444444444444432111 123467777777776554 7788888777653
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.9e-09 Score=80.15 Aligned_cols=75 Identities=24% Similarity=0.329 Sum_probs=62.7
Q ss_pred cCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCC
Q 013483 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 385 (442)
Q Consensus 308 ~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 385 (442)
+++.+.+ +++.+.++.|+++|.|+ .+.+.+++|++++.|++++.|.++++..+ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCC
Confidence 3455566 45666678899999998 78889999999999999999999877655 899999
Q ss_pred cEeee-eEeCCCcEECC
Q 013483 386 TKIKE-CIIDKNARIGK 401 (442)
Q Consensus 386 ~~i~~-~~ig~~~~ig~ 401 (442)
+.+.+ +++|++++|+.
T Consensus 63 ~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 63 VRVVNLCIIGDDVVVED 79 (79)
T ss_pred CEEcCCeEECCCeEECc
Confidence 99987 99999888874
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-08 Score=92.63 Aligned_cols=218 Identities=17% Similarity=0.187 Sum_probs=121.7
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeec---Cccceehhhhhhhhhc--------CCcEEEEEeccChhhHHHHHHhhcc
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS--------GINKVYILTQYNSASLNRHLARAYN 78 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~---g~~pli~~~l~~l~~~--------gi~~i~iv~~~~~~~i~~~~~~~~~ 78 (442)
.+|+||||.||||+ .+.||+|+||+ |+ |+|++.++++.+. ++..+++...+..+++.+++++..
T Consensus 2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~- 76 (266)
T cd04180 2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN- 76 (266)
T ss_pred EEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC-
Confidence 58999999999996 78999999999 89 9999999999862 466666666677778899997632
Q ss_pred CCCC-c-ccCCceEEEecccc----cCCcCCCccccChHHHHHHhh--hhhcCCCCCccCeEEEEcCCeee-ecCHHHHH
Q 013483 79 YGSG-V-TFGDGCVEVLAATQ----TPGEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLY-RMDYMDFV 149 (442)
Q Consensus 79 ~~~~-~-~~~~~~v~i~~~~~----~~~~~~~~~~~G~~~al~~~~--~~l~~~~~~~~~~~lv~~gD~i~-~~~l~~~l 149 (442)
+..+ . -|..+.+..+.... .........|.|.|+.+.... ..++.+...+.+++.+.+.|.+. ...=..++
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~l 156 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFI 156 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHHH
Confidence 1111 1 01111111110000 000001223567777765443 23333323346788899999944 34123456
Q ss_pred HHHHHcCCcEEEEEeecCCCcCCcccEEEEcCCCc--eEEEEeCCCcccccccccccccccccccccccccceeeeeEEE
Q 013483 150 QNHRQSGADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 227 (442)
Q Consensus 150 ~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~--v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~ 227 (442)
-.+...+.++.+-+.+....+ +.-|.+...++++ ++++.+-|.....+. .+..-.. .....+....++..+.
T Consensus 157 G~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~--~~~~~~~---~~~~~~~~~~n~~~~~ 230 (266)
T cd04180 157 GIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKM--VNNQIPK---DIDDAPFFLFNTNNLI 230 (266)
T ss_pred HHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhcc--ccccCcC---CCCceeeccceEEEEE
Confidence 667777788777666554422 2335544422254 444433222111000 0000000 0011123556889999
Q ss_pred EeHHHHHHHHh
Q 013483 228 FKKEILLNLLR 238 (442)
Q Consensus 228 ~~~~~l~~~l~ 238 (442)
|+-+.+.+.++
T Consensus 231 ~~l~~l~~~~~ 241 (266)
T cd04180 231 NFLVEFKDRVD 241 (266)
T ss_pred EEHHHHHHHHH
Confidence 99998877665
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.7e-09 Score=80.24 Aligned_cols=78 Identities=23% Similarity=0.357 Sum_probs=55.2
Q ss_pred EEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeC
Q 013483 339 VVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSA 418 (442)
Q Consensus 339 ~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~ 418 (442)
+||+++.|++++.|.+++ ++++ +.|+++|.|.+|+|++++.|++++.+.+ ..+.+..+++
T Consensus 1 ~ig~~~~I~~~~~i~~s~-ig~~------------------~~ig~~~~i~~s~i~~~~~i~~~~~i~~-~~i~~~~~i~ 60 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSV-IGRN------------------CKIGKNVVIDNSYIWDDVTIEDGCTIHH-SIVADGAVIG 60 (79)
T ss_pred CccCCCEECCCCEEeccE-ECCC------------------CEECCCCEEeCcEEeCCCEECCCCEEeC-cEEcCCCEEC
Confidence 478999999999998754 4554 9999999999999999999999999963 3333344444
Q ss_pred CCeEEccCcEEEcCCcEEc
Q 013483 419 EGFYIRSGVTVILKNSVIT 437 (442)
Q Consensus 419 ~~~~i~~~~~vi~~~~~v~ 437 (442)
++++|+.++ +|++++.||
T Consensus 61 ~~~~i~~~~-~v~~~~~ig 78 (79)
T cd05787 61 KGCTIPPGS-LISFGVVIG 78 (79)
T ss_pred CCCEECCCC-EEeCCcEeC
Confidence 444444442 234544444
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.3e-09 Score=93.50 Aligned_cols=119 Identities=19% Similarity=0.207 Sum_probs=54.1
Q ss_pred eeecCChHHHHHHhhhhhcCC-CCccccCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCc
Q 013483 270 WEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRS 344 (442)
Q Consensus 270 ~~di~t~~~~~~an~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~ 344 (442)
+..++.++...+....+.... .....+.+.+.+.+.+.++.++.+ +++.|. ++.|+++|.|+ .+.+ .++.||+++
T Consensus 63 iiai~~~~~~~~i~~~l~~~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~ 142 (201)
T TIGR03570 63 VVAIGDNKLRRRLFEKLKAKGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYV 142 (201)
T ss_pred EEEcCCHHHHHHHHHHHHhCCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCC
Confidence 444444444444444443221 111223333333444444444444 333332 24555555554 4444 345555555
Q ss_pred EECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEc
Q 013483 345 RINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIA 406 (442)
Q Consensus 345 ~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~ 406 (442)
.|++++.|...+.++++ +.||+++.+. ++.||++|.|++++++.
T Consensus 143 ~i~~~~~i~~~~~ig~~------------------~~ig~~~~v~~~~~i~~~~~i~~~~~v~ 187 (201)
T TIGR03570 143 HIAPGVTLSGGVVIGEG------------------VFIGAGATIIQGVTIGAGAIVGAGAVVT 187 (201)
T ss_pred EECCCCEEeCCcEECCC------------------CEECCCCEEeCCCEECCCCEECCCCEEC
Confidence 55555555544444444 4555555553 45555555555555553
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.8e-09 Score=92.58 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=23.8
Q ss_pred eEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEec--eEEECCc
Q 013483 322 SIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKD--TMMLGAD 361 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~--~~~~~~~ 361 (442)
+.||.++.|. .+.+ .+..||++|.|++++.|.+ .+.+|++
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~ 97 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAH 97 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCC
Confidence 3445555554 3333 2577888888888888764 3444544
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.5e-09 Score=81.75 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=48.5
Q ss_pred eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcE
Q 013483 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 398 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ 398 (442)
+++|+++|.|+ .+.| .+++||++|.|+. .|.++++++. +.|+++++|++++||+++.
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence 46666777766 5555 3577777777753 4666666665 7888888888888888888
Q ss_pred ECCCeEEccC
Q 013483 399 IGKNVIIANS 408 (442)
Q Consensus 399 ig~~~~~~~~ 408 (442)
||+++.+.|.
T Consensus 88 ig~~~~~~~~ 97 (101)
T cd05635 88 LGAGTNNSDL 97 (101)
T ss_pred ECCCceeccc
Confidence 8888888764
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-07 Score=92.89 Aligned_cols=351 Identities=14% Similarity=0.113 Sum_probs=183.2
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhh----cCC-cEEEEEeccCh-hhHHHHHHhhccCC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGI-NKVYILTQYNS-ASLNRHLARAYNYG 80 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~----~gi-~~i~iv~~~~~-~~i~~~~~~~~~~~ 80 (442)
.++.+|.||||.||||+ .+.||.++|+.+..++++..++++.. .|. -..+|-+.... ++-.+++++.-.+.
T Consensus 78 ~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~~ 154 (469)
T PLN02474 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNSN 154 (469)
T ss_pred hcEEEEEecCCcccccC---CCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCCc
Confidence 57889999999999999 88999999996644999998888755 343 25566666554 46777776532111
Q ss_pred CCcc-cCCceEE-Eecc-----cccCCcCCC-ccccChHHHHHHhhh--hhcCCCCCccCeEEEEcCCeeeecCHHHHHH
Q 013483 81 SGVT-FGDGCVE-VLAA-----TQTPGEAGK-RWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDYMDFVQ 150 (442)
Q Consensus 81 ~~~~-~~~~~v~-i~~~-----~~~~~~~~~-~~~~G~~~al~~~~~--~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~ 150 (442)
.... |....+. +... ......... -.|.|.++....... .++++...+.+++.+.+.|.+...-=..++.
T Consensus 155 ~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg 234 (469)
T PLN02474 155 IEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILN 234 (469)
T ss_pred cceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHH
Confidence 1111 1111110 0000 000000000 134566666544332 2333333446899999999964432236788
Q ss_pred HHHHcCCcEEEEEeecCCCcCCcccEEEEcCCC--ceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEE
Q 013483 151 NHRQSGADITISCLPMDDSRASDFGLMKINNEG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLF 228 (442)
Q Consensus 151 ~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~--~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~ 228 (442)
++..+++++++-+.+...++ ..-|.+.. .+| ++.++.+-|.+...+.. ....-...++..+.|
T Consensus 235 ~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~-~dgk~~lvEysqvp~e~~~~f~-------------~~~kf~~fNtnn~w~ 299 (469)
T PLN02474 235 HLIQNKNEYCMEVTPKTLAD-VKGGTLIS-YEGKVQLLEIAQVPDEHVNEFK-------------SIEKFKIFNTNNLWV 299 (469)
T ss_pred HHHhcCCceEEEEeecCCCC-CCccEEEE-ECCEEEEEEEecCCHHHHHhhc-------------ccccceeeeeeeEEE
Confidence 88888999888776654432 22355443 344 45555554443211100 011235679999999
Q ss_pred eHHHHHHHHhhhCCCC---------c----ccccchhhhcccc-cceEEEEec-ceeeecCChHHHHHHhhhhhcCCCCc
Q 013483 229 KKEILLNLLRWRFPTA---------N----DFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPPMF 293 (442)
Q Consensus 229 ~~~~l~~~l~~~~~~~---------~----~~~~~~l~~~i~~-~~i~~~~~~-g~~~di~t~~~~~~an~~~l~~~~~~ 293 (442)
+-++++++++...... + ...+.++-+++.- .+..++.++ ..+.-+.+..|++-+..++.....+.
T Consensus 300 ~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~~~ 379 (469)
T PLN02474 300 NLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVDGF 379 (469)
T ss_pred EHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhccCe
Confidence 9999887765321100 0 0000011111110 122222222 34777888888887777665443221
Q ss_pred cccCCCCcccc--cCccCCCcee-c--CCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhh
Q 013483 294 SFYDATKPIYT--SRRNLPPSKI-D--DSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE 368 (442)
Q Consensus 294 ~~~~~~~~~~~--~~~~~~~~~i-~--~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~ 368 (442)
-...+...... ..++++.... . ..++. +-...++ ..+-+|-.++..|.++++...+++-++
T Consensus 380 l~~~~~~~~~~~p~IeL~~~f~~v~~f~~rf~----~iPsl~~---~d~LtV~Gdv~fG~~v~l~G~v~i~~~------- 445 (469)
T PLN02474 380 VIRNKARTNPSNPSIELGPEFKKVANFLSRFK----SIPSIVE---LDSLKVSGDVWFGSGIVLKGKVTITAK------- 445 (469)
T ss_pred EEecCcccCCCCCcEEECcccccHHhHHHhcC----CCCCccc---CCeEEEeeeeEECCCcEEEEEEEEEcC-------
Confidence 11111111111 1122222111 0 01110 1111111 124566678888888888888887653
Q ss_pred hhhhhcCCCcceEeCCCcEeeeeEeCCC
Q 013483 369 VASLLAEGRVPVGIGENTKIKECIIDKN 396 (442)
Q Consensus 369 ~~~~~~~~~~~~~i~~~~~i~~~~ig~~ 396 (442)
++.|..|-++++++|.+|-.+
T Consensus 446 -------~~~~~~ip~g~~l~~~~~~~~ 466 (469)
T PLN02474 446 -------SGVKLEIPDGAVLENKDINGP 466 (469)
T ss_pred -------CCCeeecCCCcEecceeeccc
Confidence 122367888888877776544
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.8e-09 Score=79.05 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=50.5
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECC
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 401 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~ 401 (442)
+.|++++.|++ +++||++|.|++++.|++++++.+ +.|++++.|.+|++++++.|++
T Consensus 6 ~~I~~~~~i~~----~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 6 AKIGKTAKIGP----NVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred CEECCCCEECC----CCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 34555555543 688889999999999998887776 8999999999999999999999
Q ss_pred CeEEcc
Q 013483 402 NVIIAN 407 (442)
Q Consensus 402 ~~~~~~ 407 (442)
++.+.+
T Consensus 63 ~~~~~~ 68 (80)
T cd05824 63 WTRLEN 68 (80)
T ss_pred CcEEec
Confidence 888754
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.2e-09 Score=90.13 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=36.9
Q ss_pred eEeCCCcEECCCeEEccCCCc--ccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 391 CIIDKNARIGKNVIIANSEGI--QEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 391 ~~ig~~~~ig~~~~~~~~~~~--~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++||+||.|-.+|++++...- ..|.+||+|++||+|+.| ||+++.|||||+|
T Consensus 94 a~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVV 152 (194)
T COG1045 94 AVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVV 152 (194)
T ss_pred eEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEECCCceE
Confidence 455555555566666544322 236689999999999887 8899999999875
|
|
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-08 Score=87.33 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=52.0
Q ss_pred eeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCCCcceEeCCCcEeee-------------eEeCCCcEEC
Q 013483 337 HSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-------------CIIDKNARIG 400 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-------------~~ig~~~~ig 400 (442)
+..||+++.|++++.|... +.+|++ |.|+++|.|.. ++||+++.|+
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~------------------~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig 82 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRY------------------CILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIG 82 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCC------------------cEECCCCEEeCCccccCCCccccCeEECCccEEC
Confidence 5677888888888877754 567776 77777777753 4677788888
Q ss_pred CCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCC
Q 013483 401 KNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDG 439 (442)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~ 439 (442)
+++++.+ ..+.+...|+++++|+.++. |++++.|++|
T Consensus 83 ~~~~i~~-~~Ig~~v~Ig~~~~Ig~~~~-I~~~~~i~~g 119 (161)
T cd03359 83 ENCVVNA-AQIGSYVHIGKNCVIGRRCI-IKDCVKILDG 119 (161)
T ss_pred CCCEEEe-eEEcCCcEECCCCEEcCCCE-ECCCcEECCC
Confidence 7777654 23344445555555555533 3444444433
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-09 Score=99.53 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=15.2
Q ss_pred eeEEcCCcEECCCCEEeceEEECC
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGA 360 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~ 360 (442)
..+||++|.||+++.|..++.+|+
T Consensus 161 givIG~~a~IGdnv~I~~~VtiGg 184 (273)
T PRK11132 161 GIVIGETAVIENDVSILQSVTLGG 184 (273)
T ss_pred CeEECCCCEECCCCEEcCCcEEec
Confidence 356666666666666666666654
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.1e-08 Score=78.81 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=36.7
Q ss_pred eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcE
Q 013483 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 398 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ 398 (442)
+.++++++.|. .+.+ ..++||+++.|++++.|++.+.+|++ +.||. .|.+|+|++++.
T Consensus 11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~------------------~~Ig~--~i~~svi~~~~~ 70 (101)
T cd05635 11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPT------------------CKIGG--EVEDSIIEGYSN 70 (101)
T ss_pred CEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCC------------------CEECC--EECccEEcCCCE
Confidence 34555555555 3333 34666666666666666655555554 55543 345566666665
Q ss_pred ECCCeEEc
Q 013483 399 IGKNVIIA 406 (442)
Q Consensus 399 ig~~~~~~ 406 (442)
|+.++.++
T Consensus 71 i~~~~~lg 78 (101)
T cd05635 71 KQHDGFLG 78 (101)
T ss_pred ecCcCEEe
Confidence 55555553
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-08 Score=93.67 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=18.5
Q ss_pred eeEEcCCcEECCCCEEeceEEECC
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGA 360 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~ 360 (442)
.++||++|.||+++.|..++.+|+
T Consensus 180 GVVIGe~a~IGdnv~I~~~VtLGg 203 (294)
T PLN02694 180 GVVIGETAVIGNNVSILHHVTLGG 203 (294)
T ss_pred CeEECCCcEECCCCEEeecceeCC
Confidence 477888888888888877777775
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-08 Score=90.55 Aligned_cols=69 Identities=26% Similarity=0.342 Sum_probs=40.9
Q ss_pred eeEEcCCcEECCCCEEec--eEEECCccccchhhhhhhhcCCCcceEeCCCcEeee-------------------eEeCC
Q 013483 337 HSVVGIRSRINANVHLKD--TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-------------------CIIDK 395 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-------------------~~ig~ 395 (442)
++.||+++.|+.++.|.+ .+.+|++ |.|+++|.|.. .+||+
T Consensus 75 ni~IG~~v~In~~~~I~d~~~I~IGd~------------------v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd 136 (203)
T PRK09527 75 NIHIGRNFYANFNLTIVDDYTVTIGDN------------------VLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGN 136 (203)
T ss_pred CcEEcCCcEECCCcEEecCCCEEECCC------------------CEECCCCEEEeCCCCCChhhccccccccCCeEECC
Confidence 677888888888877743 3666665 66666666631 34444
Q ss_pred CcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 396 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 396 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
+|.||.++++. ...+||++++||+|++|
T Consensus 137 ~v~IG~~~~I~------~gv~IG~~~vIgagsvV 164 (203)
T PRK09527 137 NVWIGSHVVIN------PGVTIGDNSVIGAGSVV 164 (203)
T ss_pred CcEECCCCEEc------CCCEECCCCEECCCCEE
Confidence 44444444443 34456666666666555
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-08 Score=92.19 Aligned_cols=41 Identities=24% Similarity=0.464 Sum_probs=27.7
Q ss_pred CcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 377 RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 377 ~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
..|++||+||.|+ ||.+..++.+|+||++.. |++|+.++.+
T Consensus 180 a~Pv~IgdncliGAns~~veGV~vGdg~VV~a------------Gv~I~~~tki 221 (271)
T COG2171 180 ANPVIIGDNCLIGANSEVVEGVIVGDGCVVAA------------GVFITQDTKI 221 (271)
T ss_pred CCCeEECCccEeccccceEeeeEeCCCcEEec------------ceEEeCCcce
Confidence 4457777777777 677777777777777765 5666666554
|
|
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.9e-08 Score=80.51 Aligned_cols=51 Identities=8% Similarity=0.093 Sum_probs=23.2
Q ss_pred ccccCccCCCcee-cCCcee-eeEEcCCCEEeceEE-eeeEEcCCcEECCCCEEe
Q 013483 302 IYTSRRNLPPSKI-DDSKIV-DSIISHGSFITSSFI-EHSVVGIRSRINANVHLK 353 (442)
Q Consensus 302 ~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~~~~i-~~~~ig~~~~i~~~~~i~ 353 (442)
+..++.+++++.+ .++.+. ++.||++|.|.. .+ .+++||.+|.|++++.|.
T Consensus 10 V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~ 63 (147)
T cd04649 10 VRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM 63 (147)
T ss_pred ECCCCEECCCcEECCCCEEccCCEECCCeEECC-cccCCEEECCCCEECCCCEEE
Confidence 3344444444444 333331 444555554431 22 245555555555555554
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-08 Score=94.07 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=17.9
Q ss_pred eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 391 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 391 ~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
++||++|.||+|++|. ...+||+++.||+|++|
T Consensus 194 p~IGd~V~IGaga~Il------ggv~IG~~a~IGAgSvV 226 (273)
T PRK11132 194 PKIREGVMIGAGAKIL------GNIEVGRGAKIGAGSVV 226 (273)
T ss_pred CEECCCcEEcCCCEEc------CCCEECCCCEECCCCEE
Confidence 3455555555555554 34556666666666555
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-08 Score=87.93 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=17.8
Q ss_pred eeEEcCCcEECCCCEEe--ceEEECCc
Q 013483 337 HSVVGIRSRINANVHLK--DTMMLGAD 361 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~--~~~~~~~~ 361 (442)
...||+++.|++++.|. ..+.+|++
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~ 91 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRD 91 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCC
Confidence 46788888888887776 35666665
|
|
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-07 Score=81.94 Aligned_cols=220 Identities=21% Similarity=0.222 Sum_probs=139.4
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 84 (442)
+++.-|||+|.|.++|.. .|-+.+++|+ |||.|+|+.+..++ +++|+|-+ .++.|.+...+ ++...-
T Consensus 1 ~~~~iAiIpAR~gSKgI~------~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~---ygak~~ 68 (228)
T COG1083 1 MMKNIAIIPARGGSKGIK------NKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKK---YGAKVF 68 (228)
T ss_pred CcceEEEEeccCCCCcCC------ccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHHHH---hCcccc
Confidence 356779999999999985 7999999999 99999999999988 57776655 45566665544 232211
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe--eeecCHHHHHHHHHHcCCcEEEE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITIS 162 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~~~~~~~~~tl~ 162 (442)
+.. +.+..+. ...+.+++.++....... .+.++++.+-. +....+++.++.+...+.+..+.
T Consensus 69 -------~~R----p~~LA~D-~ast~~~~lh~le~~~~~----~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~s 132 (228)
T COG1083 69 -------LKR----PKELASD-RASTIDAALHALESFNID----EDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFS 132 (228)
T ss_pred -------ccC----ChhhccC-chhHHHHHHHHHHHhccc----cCeeEEeccCccccchhHHHHHHHHHhcCCCcceEE
Confidence 111 1111100 123445666666666541 23477777766 44456899999999888887777
Q ss_pred EeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 013483 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (442)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~ 242 (442)
+.+........| . +.+|.+..+.+.++... +.+.....+..+..+|+++.+.|.+ +
T Consensus 133 a~e~e~~p~k~f---~-~~~~~~~~~~~~~~~~~--------------rrQ~Lpk~Y~~NgaiYi~~~~~l~e---~--- 188 (228)
T COG1083 133 AVECEHHPYKAF---S-LNNGEVKPVNEDPDFET--------------RRQDLPKAYRENGAIYINKKDALLE---N--- 188 (228)
T ss_pred EeecccchHHHH---H-hcCCceeecccCCcccc--------------ccccchhhhhhcCcEEEehHHHHhh---c---
Confidence 777654322222 2 23477877777664321 1222234567788999999987742 1
Q ss_pred CCcccccchhhhcccccceEEEEec-ceeeecCChHHHHHHhhhhhc
Q 013483 243 TANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 243 ~~~~~~~~~l~~~i~~~~i~~~~~~-g~~~di~t~~~~~~an~~~l~ 288 (442)
...|. .+...|..+ ...+||++..||..|+..+..
T Consensus 189 -~~~f~----------~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 189 -DCFFI----------PNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred -Cceec----------CCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 11111 122333333 457899999999999887653
|
|
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-07 Score=94.21 Aligned_cols=217 Identities=18% Similarity=0.195 Sum_probs=121.5
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeec---Cccceehhhhhhhhhc------------C-CcEEEEEec-cChhh
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS------------G-INKVYILTQ-YNSAS 68 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~---g~~pli~~~l~~l~~~------------g-i~~i~iv~~-~~~~~ 68 (442)
..++.+||||||+||||+ ...||+|+||+ |+ |++++.++++... + .-.++|++. +..+.
T Consensus 104 ~gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~ 179 (482)
T PTZ00339 104 KGEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQ 179 (482)
T ss_pred cCCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHH
Confidence 457999999999999997 78999999994 78 9999999999874 1 224555554 66678
Q ss_pred HHHHHHhhccCCCC---cc-cCCceEEEeccc-cc----CCcCCCccccChHHHHHHhhh--hhcCCCCCccCeEEEEcC
Q 013483 69 LNRHLARAYNYGSG---VT-FGDGCVEVLAAT-QT----PGEAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSG 137 (442)
Q Consensus 69 i~~~~~~~~~~~~~---~~-~~~~~v~i~~~~-~~----~~~~~~~~~~G~~~al~~~~~--~l~~~~~~~~~~~lv~~g 137 (442)
+.+++.+...|+-. .. |....+..+... .. ....-...|.|.|+....... .++++...+.+++.+.+.
T Consensus 180 t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~v 259 (482)
T PTZ00339 180 TRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISI 259 (482)
T ss_pred HHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEec
Confidence 88888753222211 11 111111111000 00 000111234677766655432 233333344678999999
Q ss_pred CeeeecC-HHHHHHHHHHcCC-cEEEEEeecCCCcCCcccEEEEc-CCCceEEEEeCCCccccccccccccccccccccc
Q 013483 138 DHLYRMD-YMDFVQNHRQSGA-DITISCLPMDDSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (442)
Q Consensus 138 D~i~~~~-l~~~l~~~~~~~~-~~tl~~~~~~~~~~~~~g~v~~d-~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (442)
|.+.... --.++-.+...+. ++.-.+.+... .+.-|.++.. ..-.|+.+.|-+......... .....
T Consensus 260 DN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~--------~~g~l 329 (482)
T PTZ00339 260 DNILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNNDEL--------LTGEL 329 (482)
T ss_pred CcccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhcccc--------cCCee
Confidence 9964433 2355666666666 55544433322 2445666542 222566666644322110000 00110
Q ss_pred ccccceeeeeEEEEeHHHHHHHHh
Q 013483 215 EEKPYIASMGVYLFKKEILLNLLR 238 (442)
Q Consensus 215 ~~~~~l~~~Giy~~~~~~l~~~l~ 238 (442)
.-...++..++|+.+++.+.++
T Consensus 330 --~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 330 --AFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred --cccccceEEEEEEHHHHHHHhh
Confidence 1234588899999999977654
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.7e-09 Score=83.17 Aligned_cols=99 Identities=17% Similarity=0.273 Sum_probs=75.2
Q ss_pred eeEEcCCCEEeceEEeeeEEcCCcEECCCCEEec------------eEEECCccccchhhhhhhhcCCCcceEeCCCcEe
Q 013483 321 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKD------------TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI 388 (442)
Q Consensus 321 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i 388 (442)
.+++.++|.|. .++.++.+|++|+++.+++|.+ .+.+|++ +.|++.|++
T Consensus 39 KtIv~~g~iIR-GDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdh------------------VFieE~cVV 99 (184)
T KOG3121|consen 39 KTIVEEGVIIR-GDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDH------------------VFIEEECVV 99 (184)
T ss_pred cEEEeeCcEEe-cccccceEcceEEeccccccCCchHHhcCCceeeeeeecce------------------EEEecceEe
Confidence 57888899887 5677899999999999999977 5667776 889999999
Q ss_pred eeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCC
Q 013483 389 KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDG 439 (442)
Q Consensus 389 ~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~ 439 (442)
.-+.||.-+++|+++++++...+.+.++|.|+..+-.- +++.++++++++
T Consensus 100 nAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpe-t~vppy~~~~g~ 149 (184)
T KOG3121|consen 100 NAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPE-TLVPPYSTIGGN 149 (184)
T ss_pred ehhhheeeeEeccceeEcCceEhhhheeccCCcccCcc-cccCCceEEcCC
Confidence 88888999999999999886666666666666444433 224555555543
|
|
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.9e-08 Score=86.13 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=47.6
Q ss_pred cccCccCCCceecCCceeeeEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCc
Q 013483 303 YTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRV 378 (442)
Q Consensus 303 ~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (442)
...+.+.+++.+... .+..||+++.|+ ++.+ ..++||++|.|++++.|.....- +..+ ... -...
T Consensus 55 G~~~~I~~~a~i~~~--~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~----~~~~-~~~----~~~~ 123 (182)
T PRK10502 55 GKGVVIRPSVRITYP--WKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHD----YSDP-HFD----LNTA 123 (182)
T ss_pred CCCcEEcCCEEEecC--CeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCC----CcCC-Ccc----cccC
Confidence 344445555544210 146677777777 5555 25678888888877776432110 0000 000 0011
Q ss_pred ceEeCCCcEee-eeEeCCCcEECCCeEEcc
Q 013483 379 PVGIGENTKIK-ECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 379 ~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~ 407 (442)
|+.||++|.|+ +|.|..+++||++++++.
T Consensus 124 ~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga 153 (182)
T PRK10502 124 PIVIGEGCWLAADVFVAPGVTIGSGAVVGA 153 (182)
T ss_pred CEEEcCCcEEcCCCEEcCCCEECCCCEECC
Confidence 25666666665 555555555555555553
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.8e-08 Score=73.50 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=52.8
Q ss_pred eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee-eEeCCCcE
Q 013483 321 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-CIIDKNAR 398 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-~~ig~~~~ 398 (442)
+++|+++|.|+ .+.++++++++++.|++++.|.++++..+ +.|++++.+.+ ++||++++
T Consensus 17 ~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~~~~~~~~~ig~~~~ 77 (80)
T cd05824 17 NVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRWTRLENVTVLGDDVT 77 (80)
T ss_pred CCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCCcEEecCEEECCceE
Confidence 57788888887 77778999999999999999999877665 89999999986 88888888
Q ss_pred ECC
Q 013483 399 IGK 401 (442)
Q Consensus 399 ig~ 401 (442)
|++
T Consensus 78 i~~ 80 (80)
T cd05824 78 IKD 80 (80)
T ss_pred ECC
Confidence 864
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=84.66 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=23.7
Q ss_pred eeEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEece
Q 013483 321 DSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDT 355 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~~ 355 (442)
...||+++.|+ .+.+ ..++||++|.|++++.|.++
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~ 103 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDH 103 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECC
Confidence 46677777776 4444 35777777777777777653
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.8e-08 Score=85.59 Aligned_cols=103 Identities=22% Similarity=0.256 Sum_probs=61.9
Q ss_pred ccccCccCCCceec-CCceeeeEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCC
Q 013483 302 IYTSRRNLPPSKID-DSKIVDSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 376 (442)
Q Consensus 302 ~~~~~~~~~~~~i~-~~~i~~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 376 (442)
+..++.|.+|+.+. +. ++.||+++.|+ .+.+ .++.||++|.|++++.|... +.... ..........
T Consensus 58 ig~~~~I~~~~~~~~g~---ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~---~h~~~---~~~r~~g~~~ 128 (203)
T PRK09527 58 VGENAWVEPPVYFSYGS---NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT---GHPVH---HELRKNGEMY 128 (203)
T ss_pred cCCCcEEcCCEEEeeCC---CcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeC---CCCCC---hhhccccccc
Confidence 34556677777762 22 57788888887 5555 24789999999999888632 11000 0000000111
Q ss_pred CcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCccc
Q 013483 377 RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQE 413 (442)
Q Consensus 377 ~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~ 413 (442)
..|+.||++|+|+ +|+|..+++||++++++....+.+
T Consensus 129 ~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~k 166 (203)
T PRK09527 129 SFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTK 166 (203)
T ss_pred cCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 2347788888886 677777777777777776554443
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.3e-08 Score=93.91 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=42.5
Q ss_pred eeEEcCCcEEC--CCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee---------eEeCCCcEECCCeEE
Q 013483 337 HSVVGIRSRIN--ANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE---------CIIDKNARIGKNVII 405 (442)
Q Consensus 337 ~~~ig~~~~i~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~---------~~ig~~~~ig~~~~~ 405 (442)
.+.||+++.|. .+++|++.+++|++ |.|.++++|++ .+||++|.||+|++|
T Consensus 211 ~A~IG~Gv~IdHg~GVVIG~~avIGdn------------------v~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~I 272 (355)
T PLN02739 211 AARIGKGILLDHGTGVVIGETAVIGDR------------------VSILHGVTLGGTGKETGDRHPKIGDGALLGACVTI 272 (355)
T ss_pred CccccCceEEecCCceEECCCCEECCC------------------CEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEE
Confidence 34555566664 36666666666665 66666666642 455555555555555
Q ss_pred ccCCCcccceeeCCCeEEccCcEE
Q 013483 406 ANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 406 ~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
. ...+||+++.||+|++|
T Consensus 273 l------G~V~IGd~aiIGAGSVV 290 (355)
T PLN02739 273 L------GNISIGAGAMVAAGSLV 290 (355)
T ss_pred e------CCeEECCCCEECCCCEE
Confidence 4 35567777777777666
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6e-08 Score=91.83 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=90.6
Q ss_pred ceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcE
Q 013483 268 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSR 345 (442)
Q Consensus 268 g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~ 345 (442)
+.+++++.+.-+...... +.+........+-+..+..+++.+.+ +++.|..++||.+|.|+ ++.|.+|++-++++
T Consensus 300 ~~y~eiN~~k~~~~l~~e---~~~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~ 376 (433)
T KOG1462|consen 300 LSYMEINRDKKLKKLCSE---AKFVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVV 376 (433)
T ss_pred HHHHhhhHHHHHHHhccc---cccccchhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcE
Confidence 567778764444443221 11111122222445556778888998 58888899999999999 88889999999999
Q ss_pred ECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEcc
Q 013483 346 INANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 346 i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~ 407 (442)
||+|+.|++|++..+ +.||++|.+.||+||.|=++.+..+.++
T Consensus 377 vg~G~~IensIIg~g-------------------A~Ig~gs~L~nC~Ig~~yvVeak~~~~~ 419 (433)
T KOG1462|consen 377 VGDGVNIENSIIGMG-------------------AQIGSGSKLKNCIIGPGYVVEAKGKHGG 419 (433)
T ss_pred ecCCcceecceeccc-------------------ceecCCCeeeeeEecCCcEEcccccccc
Confidence 999999999988665 8999999999999999999997777665
|
|
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=82.60 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=38.7
Q ss_pred eEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceee
Q 013483 338 SVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRS 417 (442)
Q Consensus 338 ~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~ 417 (442)
++||+++.||+++.|++++.++.. ....+ ...++||++|.||+++++.. ..+|
T Consensus 82 ~~Ig~~~~IG~~~~I~~~v~ig~~-------------------~~~~~--~~~~~Ig~~v~Ig~~a~I~~------~v~I 134 (162)
T TIGR01172 82 VVIGETAVIGDDVTIYHGVTLGGT-------------------GKEKG--KRHPTVGEGVMIGAGAKVLG------NIEV 134 (162)
T ss_pred EEECCCCEECCCCEEcCCCEECCC-------------------ccccC--CcCCEECCCcEEcCCCEEEC------CcEE
Confidence 566666666666666666666541 11111 22345666666666666642 3455
Q ss_pred CCCeEEccCcEE---EcCCcEE
Q 013483 418 AEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 418 ~~~~~i~~~~~v---i~~~~~v 436 (442)
|++++||++++| +.+++++
T Consensus 135 G~~~~Iga~s~V~~dvp~~~~~ 156 (162)
T TIGR01172 135 GENAKIGANSVVLKDVPPGATV 156 (162)
T ss_pred CCCCEECCCCEECCCCCCCCEE
Confidence 666666666555 4444443
|
Cysteine biosynthesis |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=82.77 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=23.3
Q ss_pred ceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 414 ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 414 ~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
..+||++++||+++++ ||+++.||++++|
T Consensus 113 ~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V 146 (162)
T TIGR01172 113 HPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVV 146 (162)
T ss_pred CCEECCCcEEcCCCEEECCcEECCCCEECCCCEE
Confidence 3478888888888776 8999999999875
|
Cysteine biosynthesis |
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=71.00 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=16.0
Q ss_pred EcCCCEEe-ceEEe-eeEEcCCcEECCCCEEece
Q 013483 324 ISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDT 355 (442)
Q Consensus 324 i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~ 355 (442)
|++++.|+ .+.+. +++||+++.|++++.|+++
T Consensus 3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~ 36 (78)
T cd00208 3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAA 36 (78)
T ss_pred ECCCeEECCCCEEeCcEEECCCCEECCCCEEEec
Confidence 34444444 23332 3566666666666655554
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-07 Score=81.52 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=21.9
Q ss_pred eeEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEec
Q 013483 321 DSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKD 354 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~ 354 (442)
++.||+++.|+ .+.+ ...+||+++.|++++.|..
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~ 99 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYT 99 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEe
Confidence 34566666666 4433 2467888888888887754
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-07 Score=74.02 Aligned_cols=44 Identities=23% Similarity=0.251 Sum_probs=29.6
Q ss_pred eEeCCCcE---eeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 380 VGIGENTK---IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 380 ~~i~~~~~---i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
+.|++++. +..++||++|.|+.++.+.. ..+++++++|++++++
T Consensus 41 ~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~------~~~Ig~~~~i~~~~~i 87 (101)
T cd03354 41 VTLGGKGKGGGKRHPTIGDNVVIGAGAKILG------NITIGDNVKIGANAVV 87 (101)
T ss_pred CEECCCccCCcCCCCEECCCcEEcCCCEEEC------cCEECCCCEECCCCEE
Confidence 44445553 56777888888887777753 3557777777777666
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-07 Score=88.71 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=28.9
Q ss_pred eeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 389 KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 389 ~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
.+++||++|.||+|++|.. ..+||+++.||+|++| |.+++++
T Consensus 211 r~piIGd~V~IGagA~Ilg------gi~IGd~a~IGAgSVV~kdVP~~~~v 255 (294)
T PLN02694 211 RHPKIGDGVLIGAGATILG------NVKIGEGAKIGAGSVVLIDVPPRTTA 255 (294)
T ss_pred CccEECCCeEECCeeEECC------CCEECCCCEECCCCEECCcCCCCcEE
Confidence 3567777777777777753 5677788888888777 4555544
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=82.19 Aligned_cols=76 Identities=29% Similarity=0.316 Sum_probs=51.0
Q ss_pred eeEEcCCcEECCCCEEe--ceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-------------------eeEeCC
Q 013483 337 HSVVGIRSRINANVHLK--DTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------------------ECIIDK 395 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-------------------~~~ig~ 395 (442)
+..||+++.|++++.|. ..+.+|++ +.|+++|.|. .+.||+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~------------------v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~ 123 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDN------------------VLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGD 123 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCC------------------CEECCCCEEEeCCCCCChhHccccceecCCcEeCC
Confidence 57788888888888875 45677776 7777777773 345555
Q ss_pred CcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 396 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 396 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
+|.||.++++. ...+||++++||+|++| |.+++++
T Consensus 124 ~~~Ig~~a~I~------~gv~Ig~~~~VgagavV~~~vp~~~vv 161 (169)
T cd03357 124 NVWIGGGVIIL------PGVTIGDNSVIGAGSVVTKDIPANVVA 161 (169)
T ss_pred CEEECCCCEEe------CCCEECCCCEECCCCEEccccCCCcEE
Confidence 55555555554 45677888888888777 4455443
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.7e-07 Score=69.51 Aligned_cols=51 Identities=27% Similarity=0.526 Sum_probs=33.3
Q ss_pred eEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee---------eEeCCCcEECCCeEEc
Q 013483 338 SVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE---------CIIDKNARIGKNVIIA 406 (442)
Q Consensus 338 ~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~---------~~ig~~~~ig~~~~~~ 406 (442)
++||+++.|++++.|.+.+.+|++ +.|+++|.|.+ ++||++|.|+.++.+.
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~ 60 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDN------------------VNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCC------------------CEECCCCEEEeccCCCccCCcEECCCcEECCCCEEe
Confidence 357777777777777776677766 77777777764 4555555555555443
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-07 Score=83.63 Aligned_cols=94 Identities=20% Similarity=0.244 Sum_probs=48.4
Q ss_pred cCccCCCceec-CCceeeeEEcCCCEEe-ceEEe---eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcc
Q 013483 305 SRRNLPPSKID-DSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVP 379 (442)
Q Consensus 305 ~~~~~~~~~i~-~~~i~~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (442)
++.+.++.... + .+..||+++.++ .+.+. ..+||++|.|++++.|.....-.+. ...........|
T Consensus 59 ~~~i~~~~~~~~g---~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~------~~~~~~~~~~~~ 129 (183)
T PRK10092 59 EAYIEPTFRCDYG---YNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDP------VARNSGAELGKP 129 (183)
T ss_pred CEEEeCCEEEeec---CCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCCh------HHccccceecCC
Confidence 34455555441 1 156777777777 44442 2478888888888777543221110 000000000123
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEcc
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~ 407 (442)
+.||++|+|+ +|+|.++++||++++++.
T Consensus 130 v~IGd~v~IG~~a~I~~gv~IG~~~vIga 158 (183)
T PRK10092 130 VTIGNNVWIGGRAVINPGVTIGDNVVVAS 158 (183)
T ss_pred eEECCCcEECCCCEECCCCEECCCCEECC
Confidence 6666666664 566666666666666654
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.3e-07 Score=88.92 Aligned_cols=65 Identities=25% Similarity=0.392 Sum_probs=29.8
Q ss_pred eEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEe-eeeEeCCCcEECCCeEEc
Q 013483 338 SVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKI-KECIIDKNARIGKNVIIA 406 (442)
Q Consensus 338 ~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~ig~~~~~~ 406 (442)
++||++++||+++.|..++.+|+...... ....+.+++ |.||.++.| +++.||+++.||+++++.
T Consensus 247 iVIGe~avIGdnV~I~~gVtIGg~g~~~g-~~~piIGd~---V~IGagA~IlggV~IGdga~IGAgSVV~ 312 (360)
T PLN02357 247 VVIGETAVVGNNVSILHNVTLGGTGKQSG-DRHPKIGDG---VLIGAGTCILGNITIGEGAKIGAGSVVL 312 (360)
T ss_pred eEECCCCEECCCCEEeCCceecCccccCC-ccCceeCCC---eEECCceEEECCeEECCCCEECCCCEEC
Confidence 56666666666666666655554200000 000011111 455555444 355555555555555554
|
|
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.8e-07 Score=83.40 Aligned_cols=14 Identities=36% Similarity=0.352 Sum_probs=5.6
Q ss_pred eEEcCCcEECCCCE
Q 013483 338 SVVGIRSRINANVH 351 (442)
Q Consensus 338 ~~ig~~~~i~~~~~ 351 (442)
|+||++|.|++++.
T Consensus 200 vvIGd~~~IgpGvs 213 (319)
T TIGR03535 200 VVVGDGSDIGGGAS 213 (319)
T ss_pred CEECCCCEECCCce
Confidence 33334444443333
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-07 Score=90.19 Aligned_cols=68 Identities=24% Similarity=0.283 Sum_probs=39.8
Q ss_pred eEEcCCcEECC--CCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee---------eEeCCCcEECCCeEEc
Q 013483 338 SVVGIRSRINA--NVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE---------CIIDKNARIGKNVIIA 406 (442)
Q Consensus 338 ~~ig~~~~i~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~---------~~ig~~~~ig~~~~~~ 406 (442)
+.||+++.|.. +++|++.+++|++ |.|.++++|++ ++||++|.||+|++|.
T Consensus 233 a~IG~Gv~Idh~~giVIGe~avIGdn------------------V~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~Il 294 (360)
T PLN02357 233 AKIGQGILLDHATGVVIGETAVVGNN------------------VSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCIL 294 (360)
T ss_pred CEECCCeEECCCCceEECCCCEECCC------------------CEEeCCceecCccccCCccCceeCCCeEECCceEEE
Confidence 34445555553 4555555555554 55555555543 5566666666665554
Q ss_pred cCCCcccceeeCCCeEEccCcEE
Q 013483 407 NSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
+..+||+++.||+|++|
T Consensus 295 ------ggV~IGdga~IGAgSVV 311 (360)
T PLN02357 295 ------GNITIGEGAKIGAGSVV 311 (360)
T ss_pred ------CCeEECCCCEECCCCEE
Confidence 35667777777777666
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-07 Score=78.81 Aligned_cols=69 Identities=23% Similarity=0.330 Sum_probs=50.1
Q ss_pred eeEEcCCcEECC--CCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee--------eEeCCCcEECCCeEEc
Q 013483 337 HSVVGIRSRINA--NVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE--------CIIDKNARIGKNVIIA 406 (442)
Q Consensus 337 ~~~ig~~~~i~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~--------~~ig~~~~ig~~~~~~ 406 (442)
++.||+++.|++ ++.|+..+.+|++ +.|+++|.|++ +.||++|.||+++.+.
T Consensus 47 ~a~Ig~~~~I~~g~~i~I~~~~~IGd~------------------~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~ 108 (146)
T PRK10191 47 AATIGRRFTIHHGYAVVINKNVVAGDD------------------FTIRHGVTIGNRGADNMACPHIGNGVELGANVIIL 108 (146)
T ss_pred CCEECCCeEECCCCeEEECCCcEECCC------------------CEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEe
Confidence 467888999998 5777777788876 77777777753 3566666666666665
Q ss_pred cCCCcccceeeCCCeEEccCcEE
Q 013483 407 NSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
.+.+||++++||+|++|
T Consensus 109 ------~~v~IG~~~~Igags~V 125 (146)
T PRK10191 109 ------GDITIGNNVTVGAGSVV 125 (146)
T ss_pred ------CCCEECCCCEECCCCEE
Confidence 46678888888888777
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.8e-07 Score=83.66 Aligned_cols=24 Identities=8% Similarity=0.220 Sum_probs=10.8
Q ss_pred eEEcCCcEECCCCEEeceEEECCc
Q 013483 338 SVVGIRSRINANVHLKDTMMLGAD 361 (442)
Q Consensus 338 ~~ig~~~~i~~~~~i~~~~~~~~~ 361 (442)
+.++++|.|.-+++++.|+.+|.+
T Consensus 139 A~~~~gtMVd~~as~G~~a~VGkn 162 (271)
T COG2171 139 AGTGEGTMVDGRASVGSCAQVGKN 162 (271)
T ss_pred cccCcceEEeeeeeeeccEEECCC
Confidence 444444444444444444444443
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-07 Score=92.67 Aligned_cols=91 Identities=18% Similarity=0.288 Sum_probs=71.7
Q ss_pred ccCCCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhh
Q 013483 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLL 373 (442)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 373 (442)
.+++.+.+ ..+.|++++.|.+ .+.+++|+++|.|+ ++.+.+|+|+++|.|++++.|.++++..+
T Consensus 284 ~i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~------------- 348 (380)
T PRK05293 284 YIAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN------------- 348 (380)
T ss_pred EECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC-------------
Confidence 33444444 2445666666632 45579999999999 78889999999999999999999766554
Q ss_pred cCCCcceEeCCCcEeee-----eEeCCCcEECCCeEEc
Q 013483 374 AEGRVPVGIGENTKIKE-----CIIDKNARIGKNVIIA 406 (442)
Q Consensus 374 ~~~~~~~~i~~~~~i~~-----~~ig~~~~ig~~~~~~ 406 (442)
+.|+++|.+.+ ++||++++|+++++++
T Consensus 349 ------~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 349 ------AVIGDGVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred ------CEECCCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 89999999976 8999999999988774
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.7e-07 Score=77.40 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=35.0
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEEC
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIG 400 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig 400 (442)
+.+|+++.|++. .+++|++++.||+++.|++++.+|++... . .+ ++.||++|.|+ ++.|..+++||
T Consensus 48 a~Ig~~~~I~~g--~~i~I~~~~~IGd~~~I~h~v~IG~~~~~--------~-~~--~~~IGd~~~Ig~~~~I~~~v~IG 114 (146)
T PRK10191 48 ATIGRRFTIHHG--YAVVINKNVVAGDDFTIRHGVTIGNRGAD--------N-MA--CPHIGNGVELGANVIILGDITIG 114 (146)
T ss_pred CEECCCeEECCC--CeEEECCCcEECCCCEECCCCEECCCCcC--------C-CC--CCEECCCcEEcCCCEEeCCCEEC
Confidence 445555555521 13455555555555555555555542100 0 00 13566666664 45555555555
Q ss_pred CCeEEcc
Q 013483 401 KNVIIAN 407 (442)
Q Consensus 401 ~~~~~~~ 407 (442)
++++++.
T Consensus 115 ~~~~Iga 121 (146)
T PRK10191 115 NNVTVGA 121 (146)
T ss_pred CCCEECC
Confidence 5555554
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=5e-07 Score=72.95 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=21.0
Q ss_pred EEcCCCEEe-ceEE-e--eeEEcCCcEECCCCEEece
Q 013483 323 IISHGSFIT-SSFI-E--HSVVGIRSRINANVHLKDT 355 (442)
Q Consensus 323 ~i~~~~~i~-~~~i-~--~~~ig~~~~i~~~~~i~~~ 355 (442)
.||+++.|+ .+.+ . ++.||++|.|++++.|.++
T Consensus 3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred EECCCcEECCCCEEecCCceEECCCCEECCCCEEECC
Confidence 344444444 3333 2 5788888888888888765
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.9e-07 Score=93.13 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=72.0
Q ss_pred EcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCC--------
Q 013483 324 ISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDK-------- 395 (442)
Q Consensus 324 i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~-------- 395 (442)
+.+.+.+..+.++++.||++|.| +++.|+++++.++ |.||++|.|.+|+|+.
T Consensus 295 ~~~~a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~-------------------~~Ig~~~~i~~svi~~~~~~p~~~ 354 (429)
T PRK02862 295 YLPPSKLLDATITESIIAEGCII-KNCSIHHSVLGIR-------------------SRIESGCTIEDTLVMGADFYESSE 354 (429)
T ss_pred CCCCccccccEEEeCEECCCCEE-CCcEEEEEEEeCC-------------------cEECCCCEEEeeEEecCccccccc
Confidence 33344444566778999999999 8999998766554 9999999999999975
Q ss_pred -----------CcEECCCeEEccCCCcccceeeCCCeEEccCcE-----------EEcCC-cEEcCCccC
Q 013483 396 -----------NARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----------VILKN-SVITDGFVI 442 (442)
Q Consensus 396 -----------~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------vi~~~-~~v~~~~~i 442 (442)
+|.||++|++.+ ..+.+.+.||+++.+..+.. +|+.| ++|+.++++
T Consensus 355 ~~~~~~~~~~~~~~Ig~~~~i~~-~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (429)
T PRK02862 355 EREELRKEGKPPLGIGEGTTIKR-AIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVI 423 (429)
T ss_pred ccccccccCCcccEECCCCEEEE-EEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCC
Confidence 799999999965 45556667777777754432 25666 667776653
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.7e-07 Score=83.40 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=7.8
Q ss_pred eEeCCCcEECCCeEE
Q 013483 391 CIIDKNARIGKNVII 405 (442)
Q Consensus 391 ~~ig~~~~ig~~~~~ 405 (442)
+.||++|.||.|+.+
T Consensus 251 V~IGe~~lIGagA~I 265 (341)
T TIGR03536 251 ISVGEGCLLGANAGI 265 (341)
T ss_pred EEECCCcEECCCCEE
Confidence 455555555555554
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.5e-07 Score=87.02 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=16.2
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEc
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIA 406 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~ 406 (442)
|.||.+++|. ++.||++|.||+|+++.
T Consensus 264 V~IGagA~IlG~V~IGd~aiIGAGSVV~ 291 (355)
T PLN02739 264 ALLGACVTILGNISIGAGAMVAAGSLVL 291 (355)
T ss_pred CEEcCCCEEeCCeEECCCCEECCCCEEC
Confidence 5555555553 56666666666666664
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.2e-07 Score=89.98 Aligned_cols=63 Identities=19% Similarity=0.354 Sum_probs=50.5
Q ss_pred cCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCe
Q 013483 325 SHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNV 403 (442)
Q Consensus 325 ~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~ 403 (442)
...++++ .+.+.+|+||++|.|+++ .+.++++..+ |.|+++|+|.+|+|++++.||.++
T Consensus 281 ~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~v~~~~ 340 (361)
T TIGR02091 281 PPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIR-------------------VRIGSGSTVEDSVIMGDVGIGRGA 340 (361)
T ss_pred CCceEecCCCEEECCEECCCCEECCC-EEEccEECCC-------------------CEECCCCEEeeeEEeCCCEECCCC
Confidence 3445555 335568899999999976 8887766554 999999999999999999999999
Q ss_pred EEcc
Q 013483 404 IIAN 407 (442)
Q Consensus 404 ~~~~ 407 (442)
.+.+
T Consensus 341 ~l~~ 344 (361)
T TIGR02091 341 VIRN 344 (361)
T ss_pred EEee
Confidence 9853
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.2e-07 Score=71.11 Aligned_cols=27 Identities=41% Similarity=0.438 Sum_probs=12.4
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEc
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIA 406 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~ 406 (442)
+.||++|.|+ ++.+..+++||+++.++
T Consensus 55 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~ 82 (101)
T cd03354 55 PTIGDNVVIGAGAKILGNITIGDNVKIG 82 (101)
T ss_pred CEECCCcEEcCCCEEECcCEECCCCEEC
Confidence 4455555554 34444444444444443
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.1e-07 Score=81.60 Aligned_cols=79 Identities=24% Similarity=0.383 Sum_probs=55.6
Q ss_pred CcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCC-Ccc-cceeeCCC
Q 013483 343 RSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSE-GIQ-EADRSAEG 420 (442)
Q Consensus 343 ~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~-~~~-~~~~~~~~ 420 (442)
++-|.|.++|+..+.++.. .+ ++||+- ++||++|.|..++.++... +.. .+..||||
T Consensus 148 gvdihpaa~ig~gilldha--------------tg--vvigeT-----Avvg~~vSilH~Vtlggtgk~~gdrhP~Igd~ 206 (269)
T KOG4750|consen 148 GVDIHPAAKIGKGILLDHA--------------TG--VVIGET-----AVVGDNVSILHPVTLGGTGKGSGDRHPKIGDN 206 (269)
T ss_pred cccccchhhcccceeeccc--------------cc--eeecce-----eEeccceeeecceeeccccccccccCCcccCC
Confidence 4567888999999888873 01 455554 4555555555555555432 222 24589999
Q ss_pred eEEccCcEE-----EcCCcEEcCCccC
Q 013483 421 FYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 421 ~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++||.|++| ||+|++|++||+|
T Consensus 207 vliGaGvtILgnV~IGegavIaAGsvV 233 (269)
T KOG4750|consen 207 VLIGAGVTILGNVTIGEGAVIAAGSVV 233 (269)
T ss_pred eEEccccEEeCCeeECCCcEEeccceE
Confidence 999999998 9999999999975
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.6e-07 Score=72.15 Aligned_cols=25 Identities=24% Similarity=0.435 Sum_probs=18.5
Q ss_pred eeEEcCCcEECCCCEEec--eEEECCc
Q 013483 337 HSVVGIRSRINANVHLKD--TMMLGAD 361 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~--~~~~~~~ 361 (442)
+..||+++.|++++.|.+ .+.+|++
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~ 29 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSD 29 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCC
Confidence 467889999999998864 4555555
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.4e-07 Score=71.95 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=8.5
Q ss_pred ceeeCCCeEEccCcEE
Q 013483 414 ADRSAEGFYIRSGVTV 429 (442)
Q Consensus 414 ~~~~~~~~~i~~~~~v 429 (442)
...++++++|+.++.|
T Consensus 76 ~~~ig~~~~i~~~~~v 91 (109)
T cd04647 76 GVTIGDGAVVGAGSVV 91 (109)
T ss_pred CCEECCCCEECCCCEE
Confidence 3445555555555444
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.7e-07 Score=88.25 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=12.5
Q ss_pred eEeCCC-cEeeeeEeCCCcEECCCeEEc
Q 013483 380 VGIGEN-TKIKECIIDKNARIGKNVIIA 406 (442)
Q Consensus 380 ~~i~~~-~~i~~~~ig~~~~ig~~~~~~ 406 (442)
+.|+.+ +.+.+|+||++|+|++++.+.
T Consensus 311 ~~i~~~~~~~~~~ii~~~~~i~~~~~~~ 338 (353)
T TIGR01208 311 SVIEGVQARIVDSVIGKKVRIKGNRRRP 338 (353)
T ss_pred CEEcCCcceeecCEEcCCCEECCCcccc
Confidence 344443 244445555555555554443
|
Alternate name: dTDP-D-glucose synthase |
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.4e-07 Score=88.96 Aligned_cols=61 Identities=25% Similarity=0.421 Sum_probs=50.4
Q ss_pred eeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEEC
Q 013483 321 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIG 400 (442)
Q Consensus 321 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig 400 (442)
+++|+++|. |++|+||++|.|+ +.+.+++++.+ |.|+++|.|.+|+|+++|.|+
T Consensus 278 p~~i~~~~~-----i~~~~Ig~~~~i~--~~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~I~ 331 (369)
T TIGR02092 278 PTYYAENSK-----VENSLVANGCIIE--GKVENSILSRG-------------------VHVGKDALIKNCIIMQRTVIG 331 (369)
T ss_pred CcEEcCCCE-----EEEeEEcCCCEEe--eEEeCCEECCC-------------------CEECCCCEEEeeEEeCCCEEC
Confidence 345555544 4589999999997 46888887666 999999999999999999999
Q ss_pred CCeEEcc
Q 013483 401 KNVIIAN 407 (442)
Q Consensus 401 ~~~~~~~ 407 (442)
+++.+.+
T Consensus 332 ~~~~i~~ 338 (369)
T TIGR02092 332 EGAHLEN 338 (369)
T ss_pred CCCEEEE
Confidence 9999975
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=77.30 Aligned_cols=16 Identities=19% Similarity=0.273 Sum_probs=8.7
Q ss_pred ceeeCCCeEEccCcEE
Q 013483 414 ADRSAEGFYIRSGVTV 429 (442)
Q Consensus 414 ~~~~~~~~~i~~~~~v 429 (442)
..+||+++.|++|++|
T Consensus 147 gv~IG~~~vIgagsvV 162 (183)
T PRK10092 147 GVTIGDNVVVASGAVV 162 (183)
T ss_pred CCEECCCCEECCCCEE
Confidence 3455555555555554
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.1e-07 Score=91.16 Aligned_cols=67 Identities=12% Similarity=0.263 Sum_probs=54.9
Q ss_pred eEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcc
Q 013483 333 SFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQ 412 (442)
Q Consensus 333 ~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~ 412 (442)
+.+.+|+||++|.| ++|.|++|++..+ |.||++|.|.+|+|+++|+||+++.+.+
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~----- 377 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRR----- 377 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEee-----
Confidence 34568999999999 7999998776555 9999999999999999999999999964
Q ss_pred cceeeCCCeEEccC
Q 013483 413 EADRSAEGFYIRSG 426 (442)
Q Consensus 413 ~~~~~~~~~~i~~~ 426 (442)
+.|++++.|+++
T Consensus 378 --~ii~~~~~i~~~ 389 (425)
T PRK00725 378 --CVIDRGCVIPEG 389 (425)
T ss_pred --EEECCCCEECCC
Confidence 445555555555
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=76.35 Aligned_cols=66 Identities=26% Similarity=0.388 Sum_probs=38.4
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhh-hhhhhcCCCcceEeCCCcEe-eeeEeCCCcEECCCeEEcc
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAE-VASLLAEGRVPVGIGENTKI-KECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~ig~~~~~~~ 407 (442)
..+||+.+.||+++.|..++.+|..- +++. -+-..+++ |.||+++.| ++-.||+|+.||+|+++..
T Consensus 87 GvVIgeta~IGddv~I~~gVTLGgtg--~~~g~RhPtIg~~---V~IGagAkILG~I~IGd~akIGA~sVVlk 154 (194)
T COG1045 87 GVVIGETAVIGDDVTIYHGVTLGGTG--KESGKRHPTIGNG---VYIGAGAKILGNIEIGDNAKIGAGSVVLK 154 (194)
T ss_pred eEEEcceeEECCCeEEEcceEecCCC--CcCCCCCCccCCC---eEECCCCEEEcceEECCCCEECCCceEcc
Confidence 45666666666666666666666531 0111 00111111 667777666 4777888888888887764
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.1e-06 Score=68.22 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=21.4
Q ss_pred eEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEec
Q 013483 322 SIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKD 354 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~ 354 (442)
..||+++.|+ ++.+ ...+||++|.|++++.|..
T Consensus 4 i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~ 40 (107)
T cd05825 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCT 40 (107)
T ss_pred EEECCCCEECCCCEEeeCCceEECCCCEECCCeEeec
Confidence 4555555555 3444 2478888888888887753
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=85.20 Aligned_cols=52 Identities=29% Similarity=0.447 Sum_probs=30.4
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEc
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIA 406 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~ 406 (442)
..+||++|.|++++.|++.+++|++ |.||+++.|.+|+|.++|+|+.++.+.
T Consensus 261 p~~ig~~~~i~~~~~i~~~~~ig~~------------------~~I~~~~~i~~Sii~~~~~i~~~~~i~ 312 (358)
T COG1208 261 PVVIGPGAKIGPGALIGPYTVIGEG------------------VTIGNGVEIKNSIIMDNVVIGHGSYIG 312 (358)
T ss_pred CEEECCCCEECCCCEECCCcEECCC------------------CEECCCcEEEeeEEEcCCEECCCCEEe
Confidence 4555555555555555555555554 556666666666666666666655554
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-06 Score=88.01 Aligned_cols=68 Identities=15% Similarity=0.385 Sum_probs=56.3
Q ss_pred EeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc
Q 013483 335 IEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA 414 (442)
Q Consensus 335 i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~ 414 (442)
++++.||++|.|+ ++.|+++++ |.+ |.|+++|.|.+|+|+++|+||+++++.+
T Consensus 313 ~~~~~ig~~~~I~-~~~i~~svI-g~~------------------~~I~~~~~i~~sii~~~~~i~~~~~i~~------- 365 (407)
T PRK00844 313 AQDSLVSAGSIIS-GATVRNSVL-SPN------------------VVVESGAEVEDSVLMDGVRIGRGAVVRR------- 365 (407)
T ss_pred EEeCEEcCCCEEC-CeeeEcCEE-CCC------------------CEECCCCEEeeeEECCCCEECCCCEEEe-------
Confidence 4689999999999 999998655 554 9999999999999999999999999965
Q ss_pred eeeCCCeEEccCcEE
Q 013483 415 DRSAEGFYIRSGVTV 429 (442)
Q Consensus 415 ~~~~~~~~i~~~~~v 429 (442)
..+++++.|++++.+
T Consensus 366 ~ii~~~~~i~~~~~i 380 (407)
T PRK00844 366 AILDKNVVVPPGATI 380 (407)
T ss_pred eEECCCCEECCCCEE
Confidence 456666666666544
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-06 Score=87.87 Aligned_cols=92 Identities=20% Similarity=0.205 Sum_probs=62.4
Q ss_pred CCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCC-----------
Q 013483 327 GSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDK----------- 395 (442)
Q Consensus 327 ~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~----------- 395 (442)
++.+.++.+.+|+|+++|.|+ ++.|+++++..+ |.||++|.|.+|+|..
T Consensus 305 ~~~~~~~~i~~s~I~~~~~I~-~~~I~~svI~~~-------------------~~Ig~~~~I~~sii~g~~~~~~~~~~~ 364 (436)
T PLN02241 305 PSKIEDCRITDSIISHGCFLR-ECKIEHSVVGLR-------------------SRIGEGVEIEDTVMMGADYYETEEEIA 364 (436)
T ss_pred CcEecCCeEEEeEEcCCcEEc-CeEEEeeEEcCC-------------------CEECCCCEEEEeEEECCCccccccccc
Confidence 344444556669999999999 999998755444 9999999999988844
Q ss_pred -----C---cEECCCeEEccCCCcccceeeCCCeEEccCcE-----EEcCCcEEcCC
Q 013483 396 -----N---ARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VILKNSVITDG 439 (442)
Q Consensus 396 -----~---~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----vi~~~~~v~~~ 439 (442)
+ ++||+++.+.+ ..+.+.+.||+++.|+.+.. ++|+++.|+.|
T Consensus 365 ~~~~~~~~~~~Ig~~~~i~~-~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~ 420 (436)
T PLN02241 365 SLLAEGKVPIGIGENTKIRN-AIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSG 420 (436)
T ss_pred cccccCCcceEECCCCEEcc-eEecCCCEECCCcEEecccccCCccccccccEEeCC
Confidence 3 37999988864 23444455555555542222 25566666665
|
|
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-05 Score=75.28 Aligned_cols=215 Identities=12% Similarity=0.133 Sum_probs=124.2
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhh----cCC-cEEEEEeccCh-hhHHHHHHhhccCC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGI-NKVYILTQYNS-ASLNRHLARAYNYG 80 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~----~gi-~~i~iv~~~~~-~~i~~~~~~~~~~~ 80 (442)
.++.+|+||||.||||+ .+.||.|+||....++++..+++++. .|. -..+|-+.... ++..+++++.. +.
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~-~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYA-GV 77 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcC-CC
Confidence 47889999999999997 88999999997655999999988865 243 36667776554 57788887632 11
Q ss_pred C-Ccc-cCCceEEEec------cc-ccCCcCCCccccChHHHHHHhh--hhhcCCCCCccCeEEEEcCCeeeecCHHHHH
Q 013483 81 S-GVT-FGDGCVEVLA------AT-QTPGEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMDFV 149 (442)
Q Consensus 81 ~-~~~-~~~~~v~i~~------~~-~~~~~~~~~~~~G~~~al~~~~--~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l 149 (442)
. ... |....+.-+. .. ....+.-.-.|.|.++...... ..++++...+.+++.+.+.|.+...-=..++
T Consensus 78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~l 157 (300)
T cd00897 78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRIL 157 (300)
T ss_pred ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHH
Confidence 1 100 1100000000 00 0000111123456655544332 2333333344689999999996543223678
Q ss_pred HHHHHcCCcEEEEEeecCCCcCCcccEEEE-cCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEE
Q 013483 150 QNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLF 228 (442)
Q Consensus 150 ~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~-d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~ 228 (442)
..+..+++++++-+.+...++ +.-|.+.. |..-+++++.+-|.+...+.. . .......++..+.|
T Consensus 158 g~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~~~~-----------~--~~~~~~~nt~n~~~ 223 (300)
T cd00897 158 NHMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVDEFK-----------S--IKKFKIFNTNNLWV 223 (300)
T ss_pred HHHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHHhhc-----------C--cccceEEEEeEEEE
Confidence 888889999998776654432 33455543 322245555554443211100 0 01224568889999
Q ss_pred eHHHHHHHHhh
Q 013483 229 KKEILLNLLRW 239 (442)
Q Consensus 229 ~~~~l~~~l~~ 239 (442)
+-++|.++++.
T Consensus 224 ~l~~L~~~~~~ 234 (300)
T cd00897 224 NLKAVKRVVEE 234 (300)
T ss_pred EHHHHHHHHHh
Confidence 99988777654
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.7e-06 Score=81.95 Aligned_cols=54 Identities=20% Similarity=0.404 Sum_probs=48.4
Q ss_pred eEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEcc
Q 013483 333 SFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 333 ~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~ 407 (442)
+.+.+|.|+++|.|. | .+.+|++..+ +.|+++|+|.+|+|-++|.||+||++.+
T Consensus 292 s~v~nSLv~~GciI~-G-~V~nSVL~~~-------------------v~I~~gs~i~~svim~~~~IG~~~~l~~ 345 (393)
T COG0448 292 SEVSNSLVAGGCIIS-G-TVENSVLFRG-------------------VRIGKGSVIENSVIMPDVEIGEGAVLRR 345 (393)
T ss_pred ceEeeeeeeCCeEEE-e-EEEeeEEecC-------------------eEECCCCEEEeeEEeCCcEECCCCEEEE
Confidence 345689999999998 5 8999988766 9999999999999999999999999975
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.8e-06 Score=69.95 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=14.8
Q ss_pred eEEcCCcEECC-CCEEec-eEEECCc
Q 013483 338 SVVGIRSRINA-NVHLKD-TMMLGAD 361 (442)
Q Consensus 338 ~~ig~~~~i~~-~~~i~~-~~~~~~~ 361 (442)
..||+++.|++ .+.+.. .+.+|++
T Consensus 2 ~~iG~~s~i~~~~~~~~~~~i~IG~~ 27 (145)
T cd03349 2 ISVGDYSYGSGPDCDVGGDKLSIGKF 27 (145)
T ss_pred EEEeCceeeCCCCceEeCCCeEECCC
Confidence 46788888887 444443 4555655
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=68.06 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=15.4
Q ss_pred eeEEcCCcEECCCCEEece
Q 013483 337 HSVVGIRSRINANVHLKDT 355 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~ 355 (442)
.+.||++|.|++++.|...
T Consensus 21 ~i~IG~~~~I~~~v~i~~~ 39 (145)
T cd03349 21 KLSIGKFCSIAPGVKIGLG 39 (145)
T ss_pred CeEECCCCEECCCCEECCC
Confidence 6788888888888888655
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.7e-06 Score=74.01 Aligned_cols=87 Identities=23% Similarity=0.255 Sum_probs=44.7
Q ss_pred eeEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCC
Q 013483 321 DSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKN 396 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~ 396 (442)
+..+|..|.++ .+.+ .+.+||+++.+++++.|......+.. .. ...+.....+.++||++
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~------~~----------~~~~~~~~~~~v~IG~~ 130 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDF------VT----------ANIGALVGAGPVTIGED 130 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCCh------hh----------cccCCceecCCeEECCC
Confidence 45666777666 4432 45667777777777777654333321 00 01111122234555555
Q ss_pred cEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 397 ARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 397 ~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
|-||.++++.. ..+||+|+.||+|++|
T Consensus 131 vwIG~~a~Ilp------GV~IG~gavigagsVV 157 (190)
T COG0110 131 VWIGAGAVILP------GVTIGEGAVIGAGSVV 157 (190)
T ss_pred eEEcCccEECC------CEEECCCcEEeeCCEE
Confidence 55555555543 2455555556666555
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.4e-05 Score=78.37 Aligned_cols=96 Identities=21% Similarity=0.368 Sum_probs=61.4
Q ss_pred CeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcCCC---------ceEEEEeCCCccccccc
Q 013483 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG---------RVLSFSEKPKGKDLKAM 200 (442)
Q Consensus 130 ~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~---------~v~~i~ek~~~~~~~~~ 200 (442)
.-++|..+|++....-...+ .+. +.+++++..+.+..-....|+...|+++ .+.++..||.......
T Consensus 54 pGv~V~s~D~vl~~~~~~~~-~~~--~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~- 129 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDDPLI-DWD--EPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRA- 129 (414)
T ss_pred cceEEEecccccccCccccC-CCC--CCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHh-
Confidence 35899999943322211112 122 3667888888776667889999999888 7999999998765310
Q ss_pred ccccccccccccccccccceeeeeEEEEeHHHHHHHHh
Q 013483 201 AVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (442)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~ 238 (442)
............++|++.|+.+....++.
T Consensus 130 ---------~~av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 130 ---------SGAVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred ---------CCcccCCCcccccccceeccHHHHHHHHH
Confidence 00111112345589999999887766554
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.6e-05 Score=75.39 Aligned_cols=218 Identities=19% Similarity=0.261 Sum_probs=119.2
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhh----cCC-cEEEEEeccC-hhhHHHHHHhhccC
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGI-NKVYILTQYN-SASLNRHLARAYNY 79 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~----~gi-~~i~iv~~~~-~~~i~~~~~~~~~~ 79 (442)
..++.+|+||||.||||+ .+.||.++||....++++..++++.. .|. -..+|.+... +++..+++++.+.+
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~ 130 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGL 130 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGS
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCC
Confidence 467899999999999998 78999999997765888888887765 343 3667777655 45888888873322
Q ss_pred CCCccc-CCceEEEecccccCC-c-CC------Ccc-ccChHHHHHHhh--hhhcCCCCCccCeEEEEcCCeeeecCHHH
Q 013483 80 GSGVTF-GDGCVEVLAATQTPG-E-AG------KRW-FQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMD 147 (442)
Q Consensus 80 ~~~~~~-~~~~v~i~~~~~~~~-~-~~------~~~-~~G~~~al~~~~--~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ 147 (442)
.....+ ....+..+..+.... + .. ..| |.|.|+...... ..++++...+.+++.+.+.|.+...-=..
T Consensus 131 ~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~ 210 (420)
T PF01704_consen 131 DVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPV 210 (420)
T ss_dssp SCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HH
T ss_pred CcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHH
Confidence 211111 111111111111000 0 00 011 346666443332 23333333346899999999955443346
Q ss_pred HHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEE
Q 013483 148 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 227 (442)
Q Consensus 148 ~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~ 227 (442)
++..+...+.++.+-+.+...++ ..-|.++. .+|+.. +.|...-+....... . ......+.+++--.
T Consensus 211 ~lG~~~~~~~~~~~evv~Kt~~d-ek~Gvl~~-~~G~~~-vvEysqip~~~~~~~---------~-~~~~~~~FntnNi~ 277 (420)
T PF01704_consen 211 FLGYMIEKNADFGMEVVPKTSPD-EKGGVLCR-YDGKLQ-VVEYSQIPKEHMAEF---------K-DIKGFLLFNTNNIW 277 (420)
T ss_dssp HHHHHHHTT-SEEEEEEE-CSTT-TSSEEEEE-ETTEEE-EEEGGGS-HHGHHHH---------T-STTTSBEEEEEEEE
T ss_pred HHHHHHhccchhheeeeecCCCC-CceeEEEE-eCCccE-EEEeccCCHHHHHhh---------h-ccccceEEEeceee
Confidence 78888888999888777764432 33455554 245432 334333222100000 0 00012455778779
Q ss_pred EeHHHHHHHHhh
Q 013483 228 FKKEILLNLLRW 239 (442)
Q Consensus 228 ~~~~~l~~~l~~ 239 (442)
|+-+.++++++.
T Consensus 278 ~~l~~l~~~~~~ 289 (420)
T PF01704_consen 278 FSLDFLKRLLER 289 (420)
T ss_dssp EEHHHHHHHHHT
T ss_pred EEHHHHHHHHHh
Confidence 999999887764
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.1e-05 Score=70.78 Aligned_cols=116 Identities=22% Similarity=0.352 Sum_probs=75.6
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcccCCce
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 89 (442)
|||+|.+.++|+. .|.|.+++|+ |||+|+++.+.+++ +++|+|.| ..+++.+.+.+ ++.+
T Consensus 2 aiIpAR~gS~rlp------~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaT--d~~~i~~~~~~---~g~~------- 62 (217)
T PF02348_consen 2 AIIPARGGSKRLP------GKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVAT--DDEEIDDIAEE---YGAK------- 62 (217)
T ss_dssp EEEEE-SSSSSST------TGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEE--SSHHHHHHHHH---TTSE-------
T ss_pred EEEecCCCCCCCC------cchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeC--CCHHHHHHHHH---cCCe-------
Confidence 8999999999996 7999999999 99999999999975 68988877 45566666654 2211
Q ss_pred EEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCc
Q 013483 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (442)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~ 158 (442)
+...+.... .++......+...... ..+.++.+.||. +.+.. +.++++.+.+...+
T Consensus 63 v~~~~~~~~---------~~~~r~~~~~~~~~~~----~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 63 VIFRRGSLA---------DDTDRFIEAIKHFLAD----DEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp EEE--TTSS---------SHHHHHHHHHHHHTCS----TTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred eEEcChhhc---------CCcccHHHHHHHhhhh----HHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 211111111 2343333333333321 124789999999 55544 78899988888765
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.4e-05 Score=73.29 Aligned_cols=213 Identities=18% Similarity=0.276 Sum_probs=121.2
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeec-Cccceehhhhhhhhhc----CC-cEEEEEeccChhhHHHHHHhhccCC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCINS----GI-NKVYILTQYNSASLNRHLARAYNYG 80 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~-g~~pli~~~l~~l~~~----gi-~~i~iv~~~~~~~i~~~~~~~~~~~ 80 (442)
.++.+|+||||+||||+ ..-||.+++|. |+ ++++.+.+.++.+ ++ -..+|-+....++-..++...-.++
T Consensus 104 ~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~~ 179 (472)
T COG4284 104 GKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYFG 179 (472)
T ss_pred CceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhcC
Confidence 57889999999999999 88899999999 56 9999998887653 44 2566667666644444543321122
Q ss_pred C-C--ccc-CCceEE-EecccccC--CcCC---CccccChHHHHHHhhh--hhcCCCCCccCeEEEEcCCeeeecCH-HH
Q 013483 81 S-G--VTF-GDGCVE-VLAATQTP--GEAG---KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDY-MD 147 (442)
Q Consensus 81 ~-~--~~~-~~~~v~-i~~~~~~~--~~~~---~~~~~G~~~al~~~~~--~l~~~~~~~~~~~lv~~gD~i~~~~l-~~ 147 (442)
. + +.+ ...... ++.....+ ..++ .-.|.|.|+-...... .++++...+.+.+.|.+.|.+ ...+ -.
T Consensus 180 ~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL-~~~vD~~ 258 (472)
T COG4284 180 LDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNL-GATVDLK 258 (472)
T ss_pred CCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEeccccc-ccccCHH
Confidence 1 1 111 111111 11111110 0011 1224565554433322 344333345689999999993 3333 26
Q ss_pred HHHHHHHcCCcEEEEEeecCCCcCCcccEEE-EcCCCceEEEEeCCCcccccccccccccccccccccccccceee-eeE
Q 013483 148 FVQNHRQSGADITISCLPMDDSRASDFGLMK-INNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIAS-MGV 225 (442)
Q Consensus 148 ~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~-~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi 225 (442)
++.++..++.+.++-+.....+ ...-|.+. .|+.-+|+.+.+-|.....+.. ..........+ .++
T Consensus 259 ~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~~~~~~~-----------s~~~~~~~n~Nni~l 326 (472)
T COG4284 259 FLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNEHREEFT-----------SDGKLKYFNTNNIWL 326 (472)
T ss_pred HHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChhHhhhhc-----------cccceeeecccccee
Confidence 7888888899888877664443 24456655 5656677777776653211000 00000112234 788
Q ss_pred EEEeHHHHHHH
Q 013483 226 YLFKKEILLNL 236 (442)
Q Consensus 226 y~~~~~~l~~~ 236 (442)
|+++.+++.+.
T Consensus 327 ~~~~~~~l~~~ 337 (472)
T COG4284 327 HLFSVKFLKEA 337 (472)
T ss_pred ehhHHHHHHhh
Confidence 98888877554
|
|
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.9e-05 Score=74.43 Aligned_cols=216 Identities=18% Similarity=0.212 Sum_probs=121.5
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeec---Cccceehhhhhhhhhc--------------CC-cEEEEEeccCh-
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS--------------GI-NKVYILTQYNS- 66 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~---g~~pli~~~l~~l~~~--------------gi-~~i~iv~~~~~- 66 (442)
..++.+|+||||+||||+ .+.||.|++|+ ++ ++++...+++... +. -..+|.+....
T Consensus 114 ~gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~ 189 (493)
T PLN02435 114 EGKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTD 189 (493)
T ss_pred cCCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchh
Confidence 357889999999999999 88999999775 56 8999998886431 11 24567776544
Q ss_pred hhHHHHHHhhccCCCCcccCCceEEEecccccC------------CcCCCccccChHHHHHHhhh--hhcCCCCCccCeE
Q 013483 67 ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTP------------GEAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDV 132 (442)
Q Consensus 67 ~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~------------~~~~~~~~~G~~~al~~~~~--~l~~~~~~~~~~~ 132 (442)
++..+++++.-.|+-.. ..|.+......+ ...-...|.|.|+....... .++++...+.+++
T Consensus 190 ~~T~~ff~~~~~FGl~~----~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi 265 (493)
T PLN02435 190 EATRKFFESHKYFGLEA----DQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYV 265 (493)
T ss_pred HHHHHHHHhCCCCCCCc----cceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEE
Confidence 57788887532233111 112111100000 00011235577666554332 3443333446789
Q ss_pred EEEcCCeee-ecCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEE-cCCCceEEEEeCCCccccccccccccccccc
Q 013483 133 LILSGDHLY-RMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLS 210 (442)
Q Consensus 133 lv~~gD~i~-~~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~-d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~ 210 (442)
.+.+.|.+. ...--.++-.+...+.++.+-+.+...+ .+.-|.++. +.+|+.. +.|...-+...+-. ..
T Consensus 266 ~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~-~EkvG~i~~~~~~g~~~-vvEYsEl~~~~~~~-------~~ 336 (493)
T PLN02435 266 DCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYP-QEKVGVFVRRGKGGPLT-VVEYSELDQAMASA-------IN 336 (493)
T ss_pred EEEecccccccccCHHHHHHHHhcCCceEEEeeecCCC-CCceeEEEEecCCCCEE-EEEeccCCHHHHhc-------cC
Confidence 999999954 3333466778888889988876654332 234466654 2455432 44443322110000 00
Q ss_pred ccccccccceeeeeEEEEeHHHHHHHHh
Q 013483 211 KQEAEEKPYIASMGVYLFKKEILLNLLR 238 (442)
Q Consensus 211 ~~~~~~~~~l~~~Giy~~~~~~l~~~l~ 238 (442)
+......-+..++..++|+.++|.++.+
T Consensus 337 ~~~g~L~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 337 QQTGRLRYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred ccccccccchhhHHHhhccHHHHHHHHH
Confidence 0000012245678899999999987653
|
|
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0001 Score=70.28 Aligned_cols=221 Identities=14% Similarity=0.120 Sum_probs=117.8
Q ss_pred EEEEEeCCCCCCCcccccCCCccceee---cCccceehhhhhhhhhcC---------CcEEEEEeccCh-hhHHHHHHhh
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCINSG---------INKVYILTQYNS-ASLNRHLARA 76 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi---~g~~pli~~~l~~l~~~g---------i~~i~iv~~~~~-~~i~~~~~~~ 76 (442)
.+|+||||+||||+ .+.||.++|+ .++ ++++..++++.+.. .-.++|.+.... ++..+++++.
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47999999999998 8899999999 467 99999998886632 135677777544 5778888753
Q ss_pred ccCCCC---cc-cCCceEEEecccccC-------CcCCCccccChHHHHHHhh--hhhcCCCCCccCeEEEEcCCe-eee
Q 013483 77 YNYGSG---VT-FGDGCVEVLAATQTP-------GEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDH-LYR 142 (442)
Q Consensus 77 ~~~~~~---~~-~~~~~v~i~~~~~~~-------~~~~~~~~~G~~~al~~~~--~~l~~~~~~~~~~~lv~~gD~-i~~ 142 (442)
-.|+-. .. |....+..+...... ...-...|.|.|+...... ..++++...+.+++.+..-|. +..
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 223311 11 111111111100000 0011123567776655443 233333334457788888887 443
Q ss_pred cCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEE--cCCCceE-EEEeCCCcccc-ccccccccccccccccccccc
Q 013483 143 MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI--NNEGRVL-SFSEKPKGKDL-KAMAVDTTVLGLSKQEAEEKP 218 (442)
Q Consensus 143 ~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~--d~~~~v~-~i~ek~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (442)
...-.++-.+..++.++...+.+... .+.-|.++. ..+|+-. ...|+..-+.. +....+..- .. .....+.
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~--~~-~~~~~s~ 232 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGD--VD-DKTGFSP 232 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCC--cc-ccccccc
Confidence 33345566666777887766655332 356776653 2334321 11333322210 000000000 00 0000122
Q ss_pred ceeeeeEEEEeHHHHHHHHhh
Q 013483 219 YIASMGVYLFKKEILLNLLRW 239 (442)
Q Consensus 219 ~l~~~Giy~~~~~~l~~~l~~ 239 (442)
.-.+++.++|+-+.+.+.+++
T Consensus 233 f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 233 FPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred CCCeeeeEEEeHHHHHHHHhh
Confidence 356889999998888777764
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.2e-05 Score=69.14 Aligned_cols=63 Identities=24% Similarity=0.276 Sum_probs=30.6
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccC-CCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANS-EGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~-~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+.||+++.+. ++.|..+.+.......... ....+..+||+++|||.+++| ||++++||+||++
T Consensus 88 i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVV 157 (190)
T COG0110 88 ITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVV 157 (190)
T ss_pred eEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEE
Confidence 4455555544 3444444333332222221 111123466666666666665 6666666666653
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.3e-05 Score=81.54 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=57.9
Q ss_pred eeEEcCCCEEeceEE---eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCC
Q 013483 321 DSIISHGSFITSSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKN 396 (442)
Q Consensus 321 ~~~i~~~~~i~~~~i---~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~ 396 (442)
.+.||++|.|+...+ ...+||++|.|++++.|.+..+-++... ..|+.||++|.|+ +|+|.++
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~l~-------------~g~i~IG~~~~IG~~s~I~~g 178 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGRLH-------------TGPVTLGRDAFIGTRSTLDID 178 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCCcee-------------ecCcEECCCcEECCCCEEcCC
Confidence 456777777764333 3467888888888888765432221100 0126777777776 6777777
Q ss_pred cEECCCeEEccCCCcccceeeCCC-eEEccCcEEEcC
Q 013483 397 ARIGKNVIIANSEGIQEADRSAEG-FYIRSGVTVILK 432 (442)
Q Consensus 397 ~~ig~~~~~~~~~~~~~~~~~~~~-~~i~~~~~vi~~ 432 (442)
++||++++++....+.+...+.++ .+.|+-+..+|+
T Consensus 179 ~~Igd~a~vgagS~V~~g~~v~~~~~~~G~PA~~~~~ 215 (695)
T TIGR02353 179 TSIGDGAQLGHGSALQGGQSIPDGERWHGSPAQKTGA 215 (695)
T ss_pred CEECCCCEECCCCEecCCcccCCCCEEEeeCCEEecc
Confidence 777777777766555553333333 333555555544
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00072 Score=73.49 Aligned_cols=196 Identities=18% Similarity=0.223 Sum_probs=113.3
Q ss_pred eEEEEcCCeeeecC--HHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcCC--CceEEEEeCCCccccccccccccc
Q 013483 131 DVLILSGDHLYRMD--YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE--GRVLSFSEKPKGKDLKAMAVDTTV 206 (442)
Q Consensus 131 ~~lv~~gD~i~~~~--l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~--~~v~~i~ek~~~~~~~~~~~~~~~ 206 (442)
.++|..||.+...+ +.+ ...++++.+....+..-....|++..|++ +++..+..||...+...+
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~------ 221 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGL------ 221 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhh------
Confidence 78999999854433 211 22355566555555545688999998876 688889999987653211
Q ss_pred ccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC----C--cccccchhhhccc----------ccceEEEEec-ce
Q 013483 207 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT----A--NDFGSEIIPASAN----------EQFLKAYLFN-DY 269 (442)
Q Consensus 207 ~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~----~--~~~~~~~l~~~i~----------~~~i~~~~~~-g~ 269 (442)
......+.++|+|+|+.+....+++....+ . .++-.|++..+-. +.++..+.++ +.
T Consensus 222 -------~~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 222 -------SKTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred -------hcCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 111235779999999999877666553221 1 1222344433322 2445555554 67
Q ss_pred eeecCChHHHHHHhhhhhcCCCC-ccccCCCCcccccCccCCCceecCCceeeeEEcCCCEEe-c-eEEeeeEEcCCcEE
Q 013483 270 WEDIGTIRSFFEANLALTAHPPM-FSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-S-SFIEHSVVGIRSRI 346 (442)
Q Consensus 270 ~~di~t~~~~~~an~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~-~~i~~~~ig~~~~i 346 (442)
|+-+||-++|+.....+-+.... ..++.. +..-.+ + +.+.++.++.++.++ . ..|++|.||.++.|
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~~~~~~i~~~------~~~~~~-~----~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~i 363 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLVTDQRRIMHR------KVKPHP-A----MFVQNAVLSGKLTAENATLWIENSHVGEGWKL 363 (974)
T ss_pred eEEecCcHHHhcCchhHHHHhhhhhhhhcc------ccCCCC-c----eEEEeeEecCCcccCCCeEEEEeeEecCCeEE
Confidence 99999999988643333221100 011111 111111 1 234467777777777 3 22467777777777
Q ss_pred CCCCEEeceE
Q 013483 347 NANVHLKDTM 356 (442)
Q Consensus 347 ~~~~~i~~~~ 356 (442)
+.++.|...-
T Consensus 364 g~~~Iisgv~ 373 (974)
T PRK13412 364 ASRSIITGVP 373 (974)
T ss_pred cCCcEEeccc
Confidence 7777776553
|
|
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.7e-05 Score=63.19 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=37.8
Q ss_pred ccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE----eeeEEcCCcEECCCCEEec
Q 013483 304 TSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI----EHSVVGIRSRINANVHLKD 354 (442)
Q Consensus 304 ~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i----~~~~ig~~~~i~~~~~i~~ 354 (442)
.+++|.|.+++ ..+.+. +.+|+++|+|. .+.+ ..-+||+++.|.+.+.|.+
T Consensus 7 ~svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n 64 (190)
T KOG4042|consen 7 TSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRN 64 (190)
T ss_pred ceeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHh
Confidence 34677777777 444554 78999999998 5555 3478999999999888865
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.67 E-value=7.3e-05 Score=69.92 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=53.9
Q ss_pred eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccce
Q 013483 336 EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEAD 415 (442)
Q Consensus 336 ~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~ 415 (442)
++|.||+++.||++++|++.+.+.+.. ..+. ..++.++.|..|++|.++.||.++.+-+...+.+++
T Consensus 275 ~~C~Ig~~vvIG~r~~i~~gV~l~~s~---------il~~----~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV 341 (371)
T KOG1322|consen 275 ENCSIGPNVVIGPRVRIEDGVRLQDST---------ILGA----DYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNV 341 (371)
T ss_pred CccEECCCceECCCcEecCceEEEeeE---------EEcc----ceechhHHHHhhhccccccccCceEEecccEeccce
Confidence 467788778888888887777776631 1111 456667777788888888888888887766666666
Q ss_pred eeCCCeEEccC
Q 013483 416 RSAEGFYIRSG 426 (442)
Q Consensus 416 ~~~~~~~i~~~ 426 (442)
.|.+.-++.++
T Consensus 342 ~V~d~~~vn~g 352 (371)
T KOG1322|consen 342 IVADEDYVNEG 352 (371)
T ss_pred EEecccccccc
Confidence 66655555555
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00017 Score=66.52 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=37.0
Q ss_pred ccCCCCcccccCccCCCcee-------cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEec
Q 013483 295 FYDATKPIYTSRRNLPPSKI-------DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD 354 (442)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i-------~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~ 354 (442)
+++|++.++++++|+|.+.| +|+++.+++|-++|+|. ++.+-+|+||-+|.||.-++++.
T Consensus 290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~ 357 (407)
T KOG1460|consen 290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEG 357 (407)
T ss_pred EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecc
Confidence 44555555555555554443 35555667777777777 56666777777777776666544
|
|
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00056 Score=60.67 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=77.6
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccCh--hhHHHHHHhhccCCCCc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS--ASLNRHLARAYNYGSGV 83 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~--~~i~~~~~~~~~~~~~~ 83 (442)
+++-+||=|.=.+|||. -|.|+|++++ |||.++|++++.+. +++++|.|.-+. +.+.++.... |
T Consensus 2 ~~I~~IiQARmgStRLp------gKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~-----G- 68 (241)
T COG1861 2 SMILVIIQARMGSTRLP------GKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH-----G- 68 (241)
T ss_pred CcEEEEeeecccCccCC------cchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc-----C-
Confidence 34445555555567775 6999999999 99999999999976 588888887544 3555555321 1
Q ss_pred ccCCceEEEecccccCCcCCCccccC-hHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCc
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQG-TADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G-~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~ 158 (442)
+.+. .| ..+.|......++.. ..+.++=+.||. +.+.. ++..++.|.+++++
T Consensus 69 ------~~vf--------------rGs~~dVL~Rf~~a~~a~---~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaD 123 (241)
T COG1861 69 ------FYVF--------------RGSEEDVLQRFIIAIKAY---SADVVVRVTGDNPFLDPELVDAAVDRHLEKGAD 123 (241)
T ss_pred ------eeEe--------------cCCHHHHHHHHHHHHHhc---CCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 1121 13 345555555555542 145788889999 55555 47888989888765
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=63.84 Aligned_cols=60 Identities=30% Similarity=0.386 Sum_probs=38.2
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEc
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIA 406 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~ 406 (442)
..+||+-.+||.++.|-+.+.+|..+ ...+.|.| .||+||.|+ .+.|-.|+.||+|++|+
T Consensus 168 gvvigeTAvvg~~vSilH~Vtlggtg---------k~~gdrhP-~Igd~vliGaGvtILgnV~IGegavIa 228 (269)
T KOG4750|consen 168 GVVIGETAVVGDNVSILHPVTLGGTG---------KGSGDRHP-KIGDNVLIGAGVTILGNVTIGEGAVIA 228 (269)
T ss_pred ceeecceeEeccceeeecceeecccc---------ccccccCC-cccCCeEEccccEEeCCeeECCCcEEe
Confidence 57888888888888888888888742 23445666 666666664 33344444444444444
|
|
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0012 Score=68.68 Aligned_cols=167 Identities=19% Similarity=0.198 Sum_probs=100.7
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeec---Cccceehhhhhhhhhc-----------C-CcEEEEEeccCh-hhHH
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS-----------G-INKVYILTQYNS-ASLN 70 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~---g~~pli~~~l~~l~~~-----------g-i~~i~iv~~~~~-~~i~ 70 (442)
.++.+|+||||.||||+ ...||.++|++ |+ ++++..++++... + .-..+|.+.... +...
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 57889999999999998 88999999983 57 9999999887654 1 135677777554 5777
Q ss_pred HHHHhhccCCCC---ccc-CCceEEEeccc-cc----C--CcCCCccccChHHHHHHhh--hhhcCCCCCccCeEEEEcC
Q 013483 71 RHLARAYNYGSG---VTF-GDGCVEVLAAT-QT----P--GEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSG 137 (442)
Q Consensus 71 ~~~~~~~~~~~~---~~~-~~~~v~i~~~~-~~----~--~~~~~~~~~G~~~al~~~~--~~l~~~~~~~~~~~lv~~g 137 (442)
+++++.-.|+-. ..+ ....+..+... .. . ...-...|.|.++...... ..++++...+.+++.+.+.
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 788764323211 111 11111111000 00 0 0011123556666554443 3344443345678999999
Q ss_pred Ce-eeecCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEE
Q 013483 138 DH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI 179 (442)
Q Consensus 138 D~-i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~ 179 (442)
|. +.....-.++..+...+.++.+.+.+... ...-|.++.
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~ 323 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAK 323 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEE
Confidence 99 33333467788888888888887776532 355666664
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00021 Score=76.30 Aligned_cols=90 Identities=16% Similarity=0.235 Sum_probs=45.8
Q ss_pred eeEEcCCCEEeceEEeeeEE-cCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCc-EeeeeEeCCCcE
Q 013483 321 DSIISHGSFITSSFIEHSVV-GIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENT-KIKECIIDKNAR 398 (442)
Q Consensus 321 ~~~i~~~~~i~~~~i~~~~i-g~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~i~~~~ig~~~~ 398 (442)
++.||+++.++.. .++ .+.+.||++|.|++.+.+..+. ..++. .+.+++||++|.
T Consensus 597 Ga~IG~~v~i~~~----~~~~~dlv~IGd~~~I~~~~~i~~h~-------------------~~~~~~~~~~v~IG~~~~ 653 (695)
T TIGR02353 597 GVKIGRGVYIDGT----DLTERDLVTIGDDSTLNEGSVIQTHL-------------------FEDRVMKSDTVTIGDGAT 653 (695)
T ss_pred CCEECCCeEECCe----eccCCCCeEECCCCEECCCCEEEecc-------------------ccccccccCCeEECCCCE
Confidence 3556666666531 222 2336888888887777665421 11111 123455555555
Q ss_pred ECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 399 IGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 399 ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
||+++++.. ..+||+++.||+++.| .++..|++|+
T Consensus 654 IG~~a~V~~------g~~IGd~a~Ig~~SvV-~~g~~vp~~s 688 (695)
T TIGR02353 654 LGPGAIVLY------GVVMGEGSVLGPDSLV-MKGEEVPAHT 688 (695)
T ss_pred ECCCCEECC------CCEECCCCEECCCCEE-cCCcccCCCC
Confidence 555555542 3345555666666444 3444555554
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00013 Score=60.02 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=40.4
Q ss_pred eEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEE---eceEEECCccccchh-hhhhhhcC------CCcceEeCCCcEe
Q 013483 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHL---KDTMMLGADFYETDA-EVASLLAE------GRVPVGIGENTKI 388 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i---~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~i~~~~~i 388 (442)
.-|.+.+++- .+.| .+.+|+++|+|.|.+++ ...+++|.++.+-+. ...+++-+ +.+|..||.+.+.
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvF 87 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVF 87 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceE
Confidence 3455566655 5566 46788888888888877 345666766665554 33333332 1245677776555
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00056 Score=55.95 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=15.4
Q ss_pred eeEEcCCcEEC---CCCEEeceEEECCccccch
Q 013483 337 HSVVGIRSRIN---ANVHLKDTMMLGADFYETD 366 (442)
Q Consensus 337 ~~~ig~~~~i~---~~~~i~~~~~~~~~~~~~~ 366 (442)
.++|-+++.|. .+++++.-++++.+++||+
T Consensus 39 KtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRP 71 (184)
T KOG3121|consen 39 KTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRP 71 (184)
T ss_pred cEEEeeCcEEecccccceEcceEEeccccccCC
Confidence 34444444444 3455555555555555555
|
|
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00066 Score=59.98 Aligned_cols=95 Identities=15% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCccceeecC--ccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCcc
Q 013483 29 RAKPAVPIGG--AYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRW 106 (442)
Q Consensus 29 ~pK~Llpi~g--~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 106 (442)
.+|+|+++.| + |||+|+++.+. ..+++++|+++... .+ .. . + +.++..... |
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~~-~~----~~---~--~-------~~~i~d~~~----g--- 56 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPGQ-PL----PE---L--P-------APVLRDELR----G--- 56 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCCc-cc----cc---C--C-------CCEeccCCC----C---
Confidence 5899999999 9 99999999766 45899999987532 11 00 0 1 122221111 1
Q ss_pred ccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHH
Q 013483 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (442)
Q Consensus 107 ~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~ 153 (442)
.|...++..+...... ...+.++|++||+ ++..+ +.++++.+.
T Consensus 57 -~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~ 101 (178)
T PRK00576 57 -LGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAA 101 (178)
T ss_pred -CCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 3566655544433210 0147999999999 65655 566666543
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00089 Score=59.50 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=43.0
Q ss_pred cCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCC
Q 013483 325 SHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKN 402 (442)
Q Consensus 325 ~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~ 402 (442)
..++.|+ ++.++..++|+...+++++.|...++.++ +.|+..|.+. |.+.+.++.||.+
T Consensus 20 ~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayiGE~ 80 (277)
T COG4801 20 KGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYIGEF 80 (277)
T ss_pred eccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEEecc
Confidence 3333333 33344557777777777777777777655 7788888775 6777777777777
Q ss_pred eEEcc
Q 013483 403 VIIAN 407 (442)
Q Consensus 403 ~~~~~ 407 (442)
+.|..
T Consensus 81 ~sI~g 85 (277)
T COG4801 81 SSIKG 85 (277)
T ss_pred ceeee
Confidence 77764
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00035 Score=43.91 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=5.7
Q ss_pred eEeCCCcEECCCeEE
Q 013483 391 CIIDKNARIGKNVII 405 (442)
Q Consensus 391 ~~ig~~~~ig~~~~~ 405 (442)
++||++|.|++++++
T Consensus 20 ~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 20 VVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEE-TTEEEETTEEE
T ss_pred CEECCCCEEcCCCEE
Confidence 334444444444433
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=57.88 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=37.5
Q ss_pred EEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEEC
Q 013483 323 IISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIG 400 (442)
Q Consensus 323 ~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig 400 (442)
++++...++ .+.|...+++.+++|+..|.++.+++++++ .+||+.+.|+ .-++..+-.||
T Consensus 35 V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~gdLdig 96 (277)
T COG4801 35 VVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVIGDLDIG 96 (277)
T ss_pred eeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEecccccc
Confidence 444444444 444445566666666666666666666665 5666666664 34444555555
Q ss_pred CCeEEcc
Q 013483 401 KNVIIAN 407 (442)
Q Consensus 401 ~~~~~~~ 407 (442)
+++.|.+
T Consensus 97 ~dV~Ieg 103 (277)
T COG4801 97 ADVIIEG 103 (277)
T ss_pred cceEEec
Confidence 5555543
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00073 Score=42.44 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=7.8
Q ss_pred EEcCCcEECCCCEEeceEEEC
Q 013483 339 VVGIRSRINANVHLKDTMMLG 359 (442)
Q Consensus 339 ~ig~~~~i~~~~~i~~~~~~~ 359 (442)
.||+++.|++++.|.+.+.+|
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig 23 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIG 23 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-
T ss_pred EEcCCCEECCCcEecCCCEEC
Confidence 333444444444433333333
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0044 Score=38.35 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=6.0
Q ss_pred EEcCCcEECCCCEE
Q 013483 339 VVGIRSRINANVHL 352 (442)
Q Consensus 339 ~ig~~~~i~~~~~i 352 (442)
.||++|.|++++.|
T Consensus 3 ~IG~~~~ig~~~~i 16 (34)
T PF14602_consen 3 TIGDNCFIGANSTI 16 (34)
T ss_dssp EE-TTEEE-TT-EE
T ss_pred EECCCEEECccccc
Confidence 45555555555554
|
... |
| >KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.87 E-value=1 Score=44.16 Aligned_cols=155 Identities=15% Similarity=0.287 Sum_probs=85.6
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc----CCc-EEEEEeccChh-hHHHHHHhhccCC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS----GIN-KVYILTQYNSA-SLNRHLARAYNYG 80 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~----gi~-~i~iv~~~~~~-~i~~~~~~~~~~~ 80 (442)
.++..+=|-||.|+-|+ ...||.++++-+..++++.++.+.... +++ ..++......+ +-.+.+++.. +
T Consensus 102 ~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~--~ 176 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYA--G 176 (498)
T ss_pred hheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhc--C
Confidence 46678889999999999 889999999998768888777665543 333 44444555544 4444554432 1
Q ss_pred CC--------cccCCceE-EEecccccCCc-CCCccc-cChHHHHHHhh--hhhcCCCCCccCeEEEEcCCeeee-cCHH
Q 013483 81 SG--------VTFGDGCV-EVLAATQTPGE-AGKRWF-QGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYR-MDYM 146 (442)
Q Consensus 81 ~~--------~~~~~~~v-~i~~~~~~~~~-~~~~~~-~G~~~al~~~~--~~l~~~~~~~~~~~lv~~gD~i~~-~~l~ 146 (442)
.. .+|+.-.. ..++......+ ....|+ .|.++-..... ..+++....+.+.+.|-+.|.+.. .||
T Consensus 177 ~kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL- 255 (498)
T KOG2638|consen 177 SKVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL- 255 (498)
T ss_pred CceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH-
Confidence 11 12221101 11221111111 222333 46655443322 223222223468899999999764 455
Q ss_pred HHHHHHHHcCCcEEEEEeecC
Q 013483 147 DFVQNHRQSGADITISCLPMD 167 (442)
Q Consensus 147 ~~l~~~~~~~~~~tl~~~~~~ 167 (442)
.++++....+....|-+++..
T Consensus 256 ~ILn~~i~~~~ey~MEvTdKT 276 (498)
T KOG2638|consen 256 NILNHVINNNIEYLMEVTDKT 276 (498)
T ss_pred HHHHHHhcCCCceEEEecccc
Confidence 445555555666666665543
|
|
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.059 Score=48.17 Aligned_cols=85 Identities=16% Similarity=0.168 Sum_probs=56.4
Q ss_pred ceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccChHHHHHHhhhh
Q 013483 41 RLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120 (442)
Q Consensus 41 pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~ 120 (442)
||++|+++.+...++++++++++. +++.++... + + ++++.... .|.+.+++.+.+.
T Consensus 31 ~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~-~----~-------v~~i~~~~----------~G~~~si~~al~~ 86 (195)
T TIGR03552 31 AMLRDVITALRGAGAGAVLVVSPD--PALLEAARN-L----G-------APVLRDPG----------PGLNNALNAALAE 86 (195)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh-c----C-------CEEEecCC----------CCHHHHHHHHHHH
Confidence 899999999999887888888763 334433321 1 1 22332111 2889999999887
Q ss_pred hcCCCCCccCeEEEEcCCe-eeec-CHHHHHHHHH
Q 013483 121 FEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHR 153 (442)
Q Consensus 121 l~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~~~ 153 (442)
+.. ..+.+++++||+ ++.. .+.++++.++
T Consensus 87 ~~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 87 ARE----PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hhc----cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 642 135899999999 4444 4677777653
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.41 Score=39.49 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=66.3
Q ss_pred ceeecCccceehhhhhhhhhcC--CcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccCh
Q 013483 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~ 110 (442)
++|..|+.+++.++++.+.+.+ ..+++|+.+...+...+.+.+.... ... +....... ..|.
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~---------~~g~ 65 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPR-VIRVINEE---------NQGL 65 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCC-eEEEEecC---------CCCh
Confidence 3566665589999999999987 7889999887777666666554311 000 11111111 2588
Q ss_pred HHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCH-HHHHHHHH
Q 013483 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY-MDFVQNHR 153 (442)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l-~~~l~~~~ 153 (442)
+.++..+..... .+.++++.+|.++..+. ..++..+.
T Consensus 66 ~~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 66 AAARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHHh
Confidence 889988887775 48999999999887774 45434433
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=93.90 E-value=1 Score=37.95 Aligned_cols=109 Identities=12% Similarity=0.148 Sum_probs=70.3
Q ss_pred ceeecCccceehhhhhhhhhc--CCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccCh
Q 013483 33 AVPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~--gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~ 110 (442)
++|.-|+...|..+|+.+.+. ...+|+|+-+...+...+.+.+... .. ..++++...+. .|.
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~--~~-----~~i~~i~~~~n---------~g~ 66 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE--SD-----PNIRYIRNPEN---------LGF 66 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC--CS-----TTEEEEEHCCC---------SHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc--cc-----ccccccccccc---------ccc
Confidence 467777656888889888776 4567877776554455555554321 01 11445543332 488
Q ss_pred HHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEEEEE
Q 013483 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISC 163 (442)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~tl~~ 163 (442)
+.++..+..... .+.++++..|.++..+ +.++++.+.+.+.++.+..
T Consensus 67 ~~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 67 SAARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp HHHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 889988888887 4799999999988887 7888888887666554443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=88.81 E-value=0.8 Score=46.09 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=16.5
Q ss_pred ccceEEEEec-ceeeecCChHHHHHH
Q 013483 258 EQFLKAYLFN-DYWEDIGTIRSFFEA 282 (442)
Q Consensus 258 ~~~i~~~~~~-g~~~di~t~~~~~~a 282 (442)
+..+..+..+ +.++-++|-.+|++-
T Consensus 226 ~~~l~vv~l~~~~F~H~GTs~E~L~~ 251 (414)
T PF07959_consen 226 GTPLNVVPLPNGKFYHFGTSREYLEH 251 (414)
T ss_pred hccccccccCCceEEEecCCHHHHHh
Confidence 3455555554 678888888777665
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=88.56 E-value=7 Score=32.78 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=63.6
Q ss_pred ceeecCccceehhhhhhhhhcC--CcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccCh
Q 013483 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~ 110 (442)
++|.-|+..++..+++.+.+.. ..+++|+.....+...+.+.+.. . .+.++.... ..|.
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~---~-------~~~~~~~~~---------~~g~ 62 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF---P-------EVRLIRNGE---------NLGF 62 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC---C-------CeEEEecCC---------CcCh
Confidence 3566676568888898887753 45777777655555555554422 1 133332211 1588
Q ss_pred HHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHc
Q 013483 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (442)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~ 155 (442)
+.++..+..... .+.++++..|..+..+ +..+++.....
T Consensus 63 ~~a~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 63 GAGNNQGIREAK------GDYVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred HHHhhHHHhhCC------CCEEEEECCCcEECccHHHHHHHHHHhC
Confidence 888888887775 4899999999987766 56666654443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan | Back alignment and domain information |
|---|
Probab=86.51 E-value=7.6 Score=35.15 Aligned_cols=97 Identities=11% Similarity=0.207 Sum_probs=62.2
Q ss_pred ceeecCcc-ceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccChH
Q 013483 33 AVPIGGAY-RLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (442)
Q Consensus 33 Llpi~g~~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~ 111 (442)
++|.-|.. +.+..+|+.+.+....+++||.....+...+.+...... ..+.+..... .|-.
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~--------~~~~v~~~~~----------~g~~ 66 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKY--------GGIFVITVPH----------PGKR 66 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccC--------CcEEEEecCC----------CChH
Confidence 45666664 678888888877655688888776666555554322110 0133332111 3677
Q ss_pred HHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHH
Q 013483 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (442)
Q Consensus 112 ~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~ 153 (442)
.++..+..... .+.++++.+|..+..+ +.++++.+.
T Consensus 67 ~a~n~g~~~a~------~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 67 RALAEGIRHVT------TDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHHhC------CCEEEEECCCceeChhHHHHHHHhcc
Confidence 78877766654 4899999999988877 677777655
|
Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate. |
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
Probab=85.64 E-value=8.1 Score=35.16 Aligned_cols=105 Identities=9% Similarity=0.162 Sum_probs=63.5
Q ss_pred ceeecCccceehhhhhhhhhcCC----cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCcccc
Q 013483 33 AVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~ 108 (442)
++|.-|..+.+..+++.+.+... -+++|+-+...++..+.++... ... ..+.++.... .
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~--~~~-----~~v~~i~~~~----------~ 67 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYA--AKD-----PRIRLIDNPK----------R 67 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHH--hcC-----CeEEEEeCCC----------C
Confidence 35556654677778888876543 3777777666555555554422 110 1133432221 2
Q ss_pred ChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEE
Q 013483 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADIT 160 (442)
Q Consensus 109 G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~t 160 (442)
|-+.++..+.+..+ .+.++++.+|.....+ +.++++.++..+.++.
T Consensus 68 ~~~~a~N~g~~~a~------~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v 114 (249)
T cd02525 68 IQSAGLNIGIRNSR------GDIIIRVDAHAVYPKDYILELVEALKRTGADNV 114 (249)
T ss_pred CchHHHHHHHHHhC------CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEE
Confidence 56677777776665 4899999999977666 6788876655555443
|
Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. |
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=84.27 E-value=7.6 Score=33.51 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=63.1
Q ss_pred eeecCccceehhhhhhhhhc----CCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccC
Q 013483 34 VPIGGAYRLIDVPMSNCINS----GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (442)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~----gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G 109 (442)
+|..+....+..+|+.+.+. ...+|+|+-+...+...+.+.+... ++. .+.++...+. .|
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~-----~~~--~~~~~~~~~n---------~G 66 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAA-----RVP--RVRVIRLSRN---------FG 66 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHH-----hCC--CeEEEEccCC---------CC
Confidence 45555534566677777665 3567777766554444444433210 111 1233332332 47
Q ss_pred hHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEEEE
Q 013483 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (442)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~tl~ 162 (442)
.+.++..+..... .+.++++.+|.....+ +.+++......+.++.+.
T Consensus 67 ~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 67 KGAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred ccHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 7888888777666 3899999999966655 777887655555554433
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
| >cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=82.50 E-value=16 Score=32.70 Aligned_cols=106 Identities=8% Similarity=0.052 Sum_probs=62.0
Q ss_pred ceeecCccceehhhhhhhhhcC---CcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccC
Q 013483 33 AVPIGGAYRLIDVPMSNCINSG---INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~g---i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G 109 (442)
++|.-|....|..+|+.+.+.- .-+|+||-+...+...+.+.+.. ... ..+.++..... .|
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~--~~~-----~~i~~~~~~~n---------~G 65 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELA--KEY-----PRVRLIVRPGK---------RG 65 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHH--HhC-----CceEEEecCCC---------CC
Confidence 3566666456777777776642 35777776544443333333211 000 01333332222 48
Q ss_pred hHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEE
Q 013483 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADIT 160 (442)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~t 160 (442)
-+.++..+..... .+.++++.+|.....+ +..+++.....+.++.
T Consensus 66 ~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 66 LGSAYIEGFKAAR------GDVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred hHHHHHHHHHHcC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 8889988887766 3788999999976655 6777776555555543
|
Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, |
| >PLN02726 dolichyl-phosphate beta-D-mannosyltransferase | Back alignment and domain information |
|---|
Probab=82.07 E-value=14 Score=33.92 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=35.4
Q ss_pred cChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEEE
Q 013483 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITI 161 (442)
Q Consensus 108 ~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~tl 161 (442)
.|.+.|+..+..... .+.++++.+|...+.+ +.++++...+.+.+++.
T Consensus 79 ~G~~~a~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 127 (243)
T PLN02726 79 LGLGTAYIHGLKHAS------GDFVVIMDADLSHHPKYLPSFIKKQRETGADIVT 127 (243)
T ss_pred CCHHHHHHHHHHHcC------CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEE
Confidence 478888888777665 4899999999976655 67888776666666543
|
|
| >cd06423 CESA_like CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=81.13 E-value=15 Score=30.70 Aligned_cols=102 Identities=15% Similarity=0.055 Sum_probs=60.0
Q ss_pred ceeecCccceehhhhhhhhhcC--CcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccCh
Q 013483 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~ 110 (442)
.+|.-|+...|..+|+.+.+.. .-+++|+-+...+.-.+.+.+... .. . ..+.++.... ..|.
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~--~~---~-~~~~~~~~~~---------~~g~ 66 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAA--LY---I-RRVLVVRDKE---------NGGK 66 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhc--cc---c-ceEEEEEecc---------cCCc
Confidence 3566666457778888887764 457777766555444444433211 00 0 0021221111 1478
Q ss_pred HHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHc
Q 013483 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (442)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~ 155 (442)
+.++..+.+... .+.++++.+|.++..+ +.+++..+...
T Consensus 67 ~~~~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 67 AGALNAGLRHAK------GDIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred hHHHHHHHHhcC------CCEEEEECCCCCcChHHHHHHHHHhccC
Confidence 888888887775 4899999999977766 56664554443
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the |
| >cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily | Back alignment and domain information |
|---|
Probab=80.66 E-value=24 Score=32.25 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=66.4
Q ss_pred cccccCCCc--cceeecCccceehhhhhhhhhcCC----cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEeccc
Q 013483 23 YPLTKQRAK--PAVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAAT 96 (442)
Q Consensus 23 ~plt~~~pK--~Llpi~g~~pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~ 96 (442)
.+.....|+ -++|..|....|...|+.+.+... -+++|+.....+.-.+.+.+ + ... .+.++...
T Consensus 22 ~~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~-~--~~~------~v~~i~~~ 92 (251)
T cd06439 22 LPDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE-Y--ADK------GVKLLRFP 92 (251)
T ss_pred CCCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH-H--hhC------cEEEEEcC
Confidence 333444565 677888875577777777766432 26777776555544444433 1 111 13333322
Q ss_pred ccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHH
Q 013483 97 QTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (442)
Q Consensus 97 ~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~ 153 (442)
.. .|-+.++..+..... .+.++++.+|.+...+ +.++++...
T Consensus 93 ~~---------~g~~~a~n~gi~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 93 ER---------RGKAAALNRALALAT------GEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred CC---------CChHHHHHHHHHHcC------CCEEEEEccccCcCHHHHHHHHHHhc
Confidence 21 478888888887765 4899999999987766 677777654
|
This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. |
| >KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=80.63 E-value=1.3 Score=44.25 Aligned_cols=43 Identities=35% Similarity=0.506 Sum_probs=34.6
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCc--cceehhhhhhhh
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGA--YRLIDVPMSNCI 51 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~--~pli~~~l~~l~ 51 (442)
..+..++++|||+|||+. ...||.++|++-. ..++++..+.+.
T Consensus 95 ~~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~slf~~qae~il 139 (477)
T KOG2388|consen 95 EGKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGKSLFQIQAERIL 139 (477)
T ss_pred cCcceEEEeccCceeeec---cCCCcceeecCCccccchhhhhHHHHH
Confidence 457889999999999998 7789999999853 158887776643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 442 | ||||
| 1yp2_A | 451 | Crystal Structure Of Potato Tuber Adp-Glucose Pyrop | 1e-139 | ||
| 3brk_X | 420 | Crystal Structure Of Adp-Glucose Pyrophosphorylase | 2e-45 | ||
| 3hl3_A | 269 | 2.76 Angstrom Crystal Structure Of A Putative Gluco | 4e-06 | ||
| 1lvw_A | 295 | Crystal Structure Of Glucose-1-phosphate Thymidylyl | 6e-06 | ||
| 1tzf_A | 259 | X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosph | 1e-04 | ||
| 4arw_A | 302 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 3e-04 | ||
| 1fxo_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 3e-04 | ||
| 4b2x_A | 303 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 3e-04 | ||
| 3pkq_A | 292 | Q83d Variant Of S. Enterica Rmla With Dgtp Length = | 5e-04 |
| >pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose Pyrophosphorylase Length = 451 | Back alignment and structure |
|
| >pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From Agrobacterium Tumefaciens Length = 420 | Back alignment and structure |
|
| >pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative Glucose-1-Phosphate Thymidylyltransferase From Bacillus Anthracis In Complex With A Sucrose. Length = 269 | Back alignment and structure |
|
| >pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295 | Back alignment and structure |
|
| >pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate Cytidylyltransferase From Salmonella Typhi Length = 259 | Back alignment and structure |
|
| >pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 302 | Back alignment and structure |
|
| >pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Tmp Complex. Length = 293 | Back alignment and structure |
|
| >pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 303 | Back alignment and structure |
|
| >pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 442 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 0.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 0.0 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 2e-22 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 9e-19 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 5e-16 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 4e-11 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 6e-10 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 2e-06 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 4e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-04 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-04 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 5e-04 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 6e-04 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 6e-04 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 6e-04 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 684 bits (1767), Expect = 0.0
Identities = 248/444 (55%), Positives = 336/444 (75%), Gaps = 7/444 (1%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
++ +R+V +ILGGGAGTRLYPLTK+RAKPAVP+G YRLID+P+SNC+NS I+K+Y+
Sbjct: 13 LDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYV 72
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHL+RAY G +G VEVLAA Q+P WFQGTADAVRQ+ WL
Sbjct: 73 LTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPE--NPDWFQGTADAVRQYLWL 130
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FE+ + + LIL+GDHLYRMDY F+Q HR++ ADIT++ LPMD+ RA+ FGLMKI+
Sbjct: 131 FEEHT---VLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKID 187
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
EGR++ F+EKP+G+ L+AM VDTT+LGL + A+E P+IASMG+Y+ K+++LNLLR +
Sbjct: 188 EEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDK 247
Query: 241 FPTANDFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDA 298
FP ANDFGSE+IP + + ++AYL++ YWEDIGTI +F+ ANL +T P P FSFYD
Sbjct: 248 FPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDR 307
Query: 299 TKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMML 358
+ PIYT R LPPSK+ D+ + DS+I G I + I HSVVG+RS I+ ++D++++
Sbjct: 308 SAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLM 367
Query: 359 GADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSA 418
GAD+YETDA+ L A+G VP+GIG+N IK IIDKNARIG NV I N + +QEA R
Sbjct: 368 GADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARET 427
Query: 419 EGFYIRSGVTVILKNSVITDGFVI 442
+G++I+SG+ ++K+++I G +I
Sbjct: 428 DGYFIKSGIVTVIKDALIPSGIII 451
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 544 bits (1404), Expect = 0.0
Identities = 139/455 (30%), Positives = 221/455 (48%), Gaps = 66/455 (14%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+ AR A +L GG G+RL LT +RAKPAV GG R+ID +SN +NSGI ++ + T
Sbjct: 7 QPLARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVAT 66
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
QY + SL RHL R +++ + ++L A+Q E +W++GTADAV Q + E
Sbjct: 67 QYKAHSLIRHLQRGWDFFRP--ERNESFDILPASQRVSE--TQWYEGTADAVYQNIDIIE 122
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
E ++IL+GDH+Y+MDY +Q H SGAD+TI CL + A+ FG+M +N +
Sbjct: 123 PYA---PEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEK 179
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
++ F EKP D + E +ASMG+Y+F + L+ +R
Sbjct: 180 DEIIDFIEKP--ADPPGI------------PGNEGFALASMGIYVFHTKFLMEAVRRDAA 225
Query: 243 ---TANDFGSEIIPASANEQFLKAYLFND-----------YWEDIGTIRSFFEANLALTA 288
++ DFG +IIP A+ F D YW D+GTI ++++AN+ LT
Sbjct: 226 DPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTD 285
Query: 289 HPPMFSFYDATKPIYTSRRNLPPSKIDDS------KIVDSIISHGSFITSSFIEHSVVGI 342
P YD + PI+T PP+K V S++S I+ + + S++
Sbjct: 286 VVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFT 345
Query: 343 RSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKN 402
R N+ L++ ++L + V IG + ++ +ID I +
Sbjct: 346 GVRANSYSRLENAVVLPS-------------------VKIGRHAQLSNVVIDHGVVIPEG 386
Query: 403 VIIANSEGIQEADRSAEGFYI-RSGVTVILKNSVI 436
+I+ E D + F SG+ +I ++ +
Sbjct: 387 LIVGEDP---ELDA--KRFRRTESGICLITQSMID 416
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 2e-22
Identities = 41/277 (14%), Positives = 77/277 (27%), Gaps = 72/277 (25%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGG---AYRLIDVPMSNCINSGINKVYILTQYNSA 67
AVIL G GTRL + KP V +GG R + ++ +++ I+ +
Sbjct: 21 AVILAAGLGTRLGGVP----KPLVRVGGCEIILRTM-----KLLSPHVSEFIIVASRYAD 71
Query: 68 SLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNK 127
++ L + G V +G ++ ED
Sbjct: 72 DIDAFLK---DKGFNYKI------VRHDRPE---------KGNGYSLLVAKNHVEDR--- 110
Query: 128 VIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
++ GDH+Y F++ + I + +++ + GRV
Sbjct: 111 ----FILTMGDHVYS---QQFIEKAVRGEGVIAD--REPRFVDIGEATKIRVED-GRVAK 160
Query: 188 FSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247
+ + D G ++ I D
Sbjct: 161 IGKDLREFDC-----------------------VDTGFFVLDDSI-FEHA----EKLRDR 192
Query: 248 GSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEAN 283
+ + Y+ + W D+ T AN
Sbjct: 193 EEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRAN 229
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 9e-19
Identities = 32/280 (11%), Positives = 82/280 (29%), Gaps = 67/280 (23%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G GTRL PLT+ K V + LI+ + GIN + I+ Y +
Sbjct: 28 AIILAAGLGTRLRPLTENTPKALVQVNQ-KPLIEYQIEFLKEKGINDIIIIVGYLKEQFD 86
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ +G V ++ + ++
Sbjct: 87 YLKEK---------YGVRLVFNDKYADY----------NNFYSLYLV-------KEELAN 120
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
+I + ++L++ + + + T + +D ++ + ++ +V
Sbjct: 121 SYVIDADNYLFKNMFRNDLTRS-------TYFSVYREDC--TNEWFLVYGDDYKVQDIIV 171
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL------LNLLRWRFPTA 244
K + ++ GV + ++
Sbjct: 172 DS--KAGRILS----------------------GVSFWDAPTAEKIVSFIDKAYVSGEFV 207
Query: 245 NDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEAN 283
+ + ++ + E + +I +++ + +
Sbjct: 208 DLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE 247
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 5e-16
Identities = 75/457 (16%), Positives = 141/457 (30%), Gaps = 125/457 (27%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGINKVYILTQYN 65
A IL G+G RL P+T R K VPI P+ GI + ++
Sbjct: 3 AFILAAGSGERLEPITHTRPKAFVPILSK------PLIEYQIEYLRKCGIRDITVIVSSK 56
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
+ + + V +GT A+
Sbjct: 57 NKEYFEKKLKEISI------------VTQKDD---------IKGTGAAILS--------- 86
Query: 126 NKVIEDVLILSGDHLY--RMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 183
K ++ LI+ GD + + + + I + + + D+G++ ++N+
Sbjct: 87 AKFNDEALIIYGDLFFSNEKEICNIITLKEN-----AIIGVKVSN--PKDYGVLVLDNQN 139
Query: 184 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
+ EKP + + + G+Y +I
Sbjct: 140 NLSKIIEKP----------EIP-------PSNL----INAGIYKLNSDIF---------- 168
Query: 244 ANDFGSEIIPA-SANEQF----------------LKAYLFNDYWEDIGTIRSFFEANLAL 286
+ S +E+ +K + YW DIG + + N
Sbjct: 169 ------TYLDKISISERGELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVN-KW 221
Query: 287 TAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRI 346
+FS + + + I++ D+ I G++I +G S I
Sbjct: 222 ALDNLVFSQNLGN--VEDNVKIKGKVIIEE----DAEIKSGTYIEGP----VYIGKGSEI 271
Query: 347 NANVHLKDTMMLGADFY-ETDAEV-ASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVI 404
N +L+ +L EV S++ EG I + + + +I ++ G +
Sbjct: 272 GPNSYLRPYTILVEKNKIGASVEVKESVIMEG---SKIPHLSYVGDSVIAEDVNFGAGTL 328
Query: 405 IAN-SEGIQEADRSAEGFYIRSGV----TVILKNSVI 436
IAN +E + +G I SG I +
Sbjct: 329 IANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRT 365
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 4e-11
Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 31/153 (20%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+I+ GG GTR+ + KP + + G LID +S + S +N ++I T N+
Sbjct: 3 ALIMAGGKGTRMGGVE----KPLIKLCG-RCLIDYVVSPLLKSKVNNIFIATSPNTPKTK 57
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
++ AY + T G +G + + + F +P
Sbjct: 58 EYINSAYKDYKNIVV----------IDTSG-------KGYIEDLNECIGYFSEP------ 94
Query: 131 DVLILSGD--HLYRMDYMDFVQNHRQSGADITI 161
L++S D +L V A
Sbjct: 95 -FLVVSSDLINLKSKIINSIVDYFYCIKAKTPD 126
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 6e-10
Identities = 52/201 (25%), Positives = 72/201 (35%), Gaps = 34/201 (16%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVP-----MSNCINSGINKVYILTQYN 65
AVIL GG GTRL T + KP V IGG P M GI I Y
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIGG------KPILWHIMKMYSVHGIKDFIICCGYK 58
Query: 66 SASLNRHLARAYNYGSGVTF--GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED 123
+ + A + + S VTF + +EV + + W D
Sbjct: 59 GYVIKEYFANYFLHMSDVTFHMAENRMEVH------HKRVEPWNVTLVDTGD---SSMTG 109
Query: 124 PRNKVIEDVLILS-------GDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGL 176
R K + + + GD + +D + H+ G T++ FG
Sbjct: 110 GRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFP----PGRFGA 165
Query: 177 MKINNEGRVLSFSEKPKGKDL 197
+ I G+V SF EKPKG
Sbjct: 166 LDIQA-GQVRSFQEKPKGDGA 185
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 2e-06
Identities = 40/255 (15%), Positives = 81/255 (31%), Gaps = 17/255 (6%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
+L G G+R Y KQ P G ++D + + I +G ++ + +++
Sbjct: 8 LFVLAAGMGSR-YGSLKQ-LDGIGPGG--DTIMDYSVYDAIRAGFGRLVFVIRHSFEKEF 63
Query: 71 R-HLARAYNYGSGVTFGDGCVEVL-AATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKV 128
R + Y V ++ L P K W GT AV +P +
Sbjct: 64 REKILTKYEGRIPVELVFQELDRLPEGFSCPEGREKPW--GTNHAVLMGRDAIREPFAVI 121
Query: 129 IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR--ASDFGLMKINNEGRVL 186
D + ++ +Q + + S G+ +++ + +
Sbjct: 122 NADDFYGRNGFEVLARKLMTLEG-KQGEYCMVGYRVGNTLSESGGVSRGVCQVDEKHLLT 180
Query: 187 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246
E+ + G AE+ P SM ++ F + + F +
Sbjct: 181 GVVERTGIERTDGTISFRDETGKICTLAEDAP--VSMNMWGFTPDY-FDYSEELFI---N 234
Query: 247 FGSEIIPASANEQFL 261
F + +E F+
Sbjct: 235 FLNAHGQEPKSEFFI 249
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255 | Back alignment and structure |
|---|
Score = 44.3 bits (103), Expect = 4e-05
Identities = 18/191 (9%), Positives = 48/191 (25%), Gaps = 19/191 (9%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNR 71
VI G +R + + K + G L + +++ + ++ N
Sbjct: 3 VIPMAGMSSRFFKAGYTQPKYMLEAHG-QTLFEHSVNSFAAYFASTPFLFIVRNVYDTAV 61
Query: 72 HLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIED 131
+ F + L + + +
Sbjct: 62 FVREKATQLGIKQFYIAELH------------TETRGQAETVTLGLEELAKQGVDY--QG 107
Query: 132 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEK 191
+ + +R +++ + G + F + +V+ +EK
Sbjct: 108 SITVFNIDTFRPNFVFPDISQHSDGYLEVFQGGGDNW----SFAKPEHAGSTKVIQTAEK 163
Query: 192 PKGKDLKAMAV 202
DL + +
Sbjct: 164 NPISDLCSTGL 174
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 5e-04
Identities = 26/296 (8%), Positives = 83/296 (28%), Gaps = 78/296 (26%)
Query: 120 LFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNH---RQSGADITI--------SCLPMDD 168
++ + R+++ D + + ++ R+ ++ + ++ I + + +D
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 169 SRASDFGLMKINNEGRV--LSFSEKPKGKDLKAMAVDT-TVLGLSKQEAEEKPYIASMGV 225
+ + + ++ L+ + + M + + + + +
Sbjct: 171 CLSYKV---QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 226 YLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYL-FNDYWEDIGTIRSFFEANL 284
+ + E L LL+ + + L + + +F
Sbjct: 228 HSIQAE-LRRLLKSK------------------PYENCLLVLLNVQ-NAKAWNAF----- 262
Query: 285 ALTAHPPMFSFYDAT-KPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIR 343
+ + K + T+R ++ D + + T ++H + +
Sbjct: 263 ------------NLSCKILLTTR---------FKQVTDFLS--AATTTHISLDHHSMTL- 298
Query: 344 SRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARI 399
+ L + + + P + I E I D A
Sbjct: 299 -------TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATW 344
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 8e-04
Identities = 45/310 (14%), Positives = 101/310 (32%), Gaps = 74/310 (23%)
Query: 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAV-DTTVLGLSKQEAEEKPYIASMG 224
MD + G + + + F + + V D LSK+E + I
Sbjct: 7 MD----FETGEHQYQYKDILSVFEDAFV-DNFDCKDVQDMPKSILSKEEIDH---IIMSK 58
Query: 225 VYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDY-W-------EDIGT- 275
+ L L E++ ++F++ L +Y + E
Sbjct: 59 DAVSGTLRLFWTLL-------SKQEEMV-----QKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 276 --IRSFFEANLALTAHPPMFSFYDAT--KPIYTSRRNLPPSKIDDSKIVDSIISHG---- 327
R + E L +F+ Y+ + +P R+ L ++ +K V + G
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL--LELRPAKNV---LIDGVLGS 161
Query: 328 --SFITSSFIEHSVV---GIRSRINANVH-LK---------DTMMLGADFYETDAEVASL 372
+++ V ++ +++ + L ML Y+ D S
Sbjct: 162 GKTWVAL-----DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 373 L-AEGRVPVGIGE-NTKIKECIIDKNARIGKN--VIIANSEGIQEADRSAEGFYIRSGVT 428
+ + I +++ + K +N +++ N +Q A ++ F + +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKP---YENCLLVLLN---VQNA-KAWNAFNLSCKIL 269
Query: 429 VILKNSVITD 438
+ + +TD
Sbjct: 270 LTTRFKQVTD 279
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... Length = 293 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 5e-04
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 11/56 (19%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGINKVYILT 62
+IL GG+GTRL+P T +K +P+ Y D PM S + +GI ++ I++
Sbjct: 6 IILAGGSGTRLHPATLAISKQLLPV---Y---DKPMIYYPLSTLMLAGIREILIIS 55
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* Length = 269 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM 47
+IL GG G+RLYP+TK K +P+ PM
Sbjct: 28 IILAGGTGSRLYPITKVTNKHLLPV---G---RYPM 57
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 Length = 295 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 6e-04
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 6/36 (16%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM 47
++L GG+GTRLYP+T+ +K +PI Y D PM
Sbjct: 7 IVLAGGSGTRLYPITRAVSKQLLPI---Y---DKPM 36
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Length = 296 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 11/56 (19%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGINKVYILT 62
+IL GG+GTRL+P+T+ +K +PI Y D PM S + +GI ++ I+T
Sbjct: 7 IILAGGSGTRLHPITRGVSKQLLPI---Y---DKPMIYYPLSVLMLAGIREILIIT 56
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 442 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 100.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 100.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 100.0 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 100.0 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 100.0 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 100.0 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 100.0 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 100.0 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 99.98 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 99.97 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 99.97 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 99.97 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 99.97 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 99.97 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 99.97 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.96 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.95 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.95 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.94 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.94 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.91 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.91 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.89 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.89 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.88 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.87 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.86 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.85 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.83 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.82 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.81 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.81 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.81 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 99.8 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.8 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 99.78 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.77 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.77 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.76 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.72 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.71 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.7 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.7 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.69 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.69 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.69 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.68 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.67 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.67 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.65 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.64 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.63 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.62 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.62 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.61 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.61 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.59 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 99.58 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.58 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.55 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.55 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 99.53 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.52 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.51 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.51 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.51 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.51 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.46 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.45 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.45 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.45 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.44 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.44 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.43 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.43 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.43 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.42 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.42 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.41 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.4 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 99.4 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.39 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 99.39 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.39 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.37 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.37 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 99.36 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.36 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.36 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.35 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.33 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.33 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 99.32 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.32 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.32 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.31 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.31 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.3 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 99.3 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.3 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.29 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.28 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.28 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 99.27 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 99.27 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.26 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.25 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 99.25 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.23 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.22 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 99.22 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.2 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.2 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 99.2 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 99.2 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.2 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.2 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 99.16 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.16 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 99.14 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.14 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 99.08 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 99.08 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.07 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 99.05 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 99.03 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 99.03 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 99.03 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 99.02 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 99.0 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.99 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.98 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.97 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.96 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 98.95 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.94 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.93 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.93 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.92 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.92 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.91 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.9 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.9 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.87 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.87 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.84 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.82 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.82 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 98.81 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.81 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.8 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.79 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.76 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.76 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.73 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 98.71 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 98.65 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.61 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.56 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.55 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.54 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.51 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 98.48 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.34 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 98.34 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 98.24 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 97.61 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 96.6 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 87.84 | |
| 1qg8_A | 255 | Protein (spore coat polysaccharide biosynthesis P | 86.11 | |
| 3cgx_A | 242 | Putative nucleotide-diphospho-sugar transferase; Y | 80.85 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-59 Score=474.57 Aligned_cols=430 Identities=58% Similarity=1.037 Sum_probs=343.5
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcc-
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT- 84 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~- 84 (442)
|++|+|||||||+||||+|||..+||+|+|++|++|||+|++++|.++|+++++|+++++.+++.+++.+.+ +.+..
T Consensus 18 ~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~--~~~~~~ 95 (451)
T 1yp2_A 18 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY--ASNMGG 95 (451)
T ss_dssp HHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHC--C-----
T ss_pred ccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhh--hccccc
Confidence 557999999999999999999999999999999878999999999999999999999999888988887543 11110
Q ss_pred c-CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEE
Q 013483 85 F-GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 85 ~-~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
+ ....++++...+.+ .+..+++|++++|+.++.++... ..++|++++||++++.++.++++.|+++++++|+++
T Consensus 96 ~~~~~~v~i~~~~~~~--~~~~~~~Gt~~al~~a~~~~~~~---~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~ 170 (451)
T 1yp2_A 96 YKNEGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEEH---TVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAA 170 (451)
T ss_dssp ---CCEEEEEESCSST--TSCCCCCSHHHHHHHTHHHHTTS---CCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEE
T ss_pred ccccCcEEEecccccc--cccccccCcHHHHHHHHHHHHhc---CCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEE
Confidence 1 11224555433321 11234579999999999888521 137999999999988899999999999889999988
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+.+..++.+||++..|++++|..|.|||..+....+.++..++..++......++++++|+|+|++++|.+++++.++.
T Consensus 171 ~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 250 (451)
T 1yp2_A 171 LPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPG 250 (451)
T ss_dssp EEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTT
T ss_pred EEcChhhcccCCEEEECCCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhccc
Confidence 87653346789999999889999999999865444444555555433322222357889999999999987777765444
Q ss_pred Ccccccchhhhcccc-cceEEEEecceeeecCChHHHHHHhhhhhcCC-CCccccCCCCcccccCccCCCceecCCceee
Q 013483 244 ANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKIDDSKIVD 321 (442)
Q Consensus 244 ~~~~~~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~ 321 (442)
..++.+++++.++++ .+++++.++++|.|++|+++|.+|++.++.+. +...++++.+.+++++.+++++.+.++.|.+
T Consensus 251 ~~~~~~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~~ 330 (451)
T 1yp2_A 251 ANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTD 330 (451)
T ss_dssp CCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEEEEEEEEE
T ss_pred ccchHhhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEEcceEEeC
Confidence 456667889988876 78999999999999999999999999998876 6677889999999999999999998888889
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECC
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 401 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~ 401 (442)
+.||++|+|+.+.+.+++||++|.|++++.|++++++++.++............+.+.+.||++|+|++|+||++|.||+
T Consensus 331 ~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~ 410 (451)
T 1yp2_A 331 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGD 410 (451)
T ss_dssp EEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECT
T ss_pred eEECCCCEEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEECC
Confidence 99999999997677899999999999999999999999843333322222333333227999999999999999999999
Q ss_pred CeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCccC
Q 013483 402 NVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 442 (442)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~i 442 (442)
++++.+..++.++.+||++++||+|+++||++++||+||+|
T Consensus 411 ~~~i~~~~~~~~~~~ig~~~~ig~~~v~Ig~~a~i~agsvv 451 (451)
T 1yp2_A 411 NVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451 (451)
T ss_dssp TCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred CCEEeCCcccccCceeCCCEEEcCCEEEECCCcEECCCccC
Confidence 99999999998888999999999999889999999999986
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-49 Score=396.32 Aligned_cols=363 Identities=36% Similarity=0.613 Sum_probs=287.4
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|++|+|||||||.|+||+|||..+||+|+|++|++|||+|++++|.++|+++++|+++++.+++.+++.+.+.+ ...+
T Consensus 10 m~~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~--~~~~ 87 (420)
T 3brk_X 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWDF--FRPE 87 (420)
T ss_dssp GGGEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHSCC--CCGG
T ss_pred hhceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhhcc--cccc
Confidence 45789999999999999999999999999999986799999999999999999999999888898888764311 1001
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEee
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
....+.+++..+.. ....|..|++++|+.++.++... ..++|++++||+++..++.++++.|+++++++|+++.+
T Consensus 88 ~~~~v~i~~~~~~~--~~~~~~~Gt~~al~~a~~~l~~~---~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~ 162 (420)
T 3brk_X 88 RNESFDILPASQRV--SETQWYEGTADAVYQNIDIIEPY---APEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLE 162 (420)
T ss_dssp GTCEEEEECCC---------CCCCHHHHHHTTHHHHHHH---CCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEE
T ss_pred ccCCEEEeCccccc--cCCccccCCHHHHHHHHHHHHhc---CCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEee
Confidence 11124454433210 00112369999999999888520 13689999999998889999999999988899998887
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC--
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-- 243 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-- 243 (442)
.+..++..||++..|+++++..|.|||..+... .....++++++|+|+|++++|.+++++..+.
T Consensus 163 ~~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~~--------------~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 228 (420)
T 3brk_X 163 VPRMEATGFGVMHVNEKDEIIDFIEKPADPPGI--------------PGNEGFALASMGIYVFHTKFLMEAVRRDAADPT 228 (420)
T ss_dssp EETTGGGGSEEEEECTTSBEEEEEESCSSCCCB--------------TTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC--
T ss_pred cCccccCcccEEEECCCCcEEEeEeCCCccccc--------------cccccceEEeeeeEEEeHHHHHHHHHHhcccCC
Confidence 654446789999988889999999998643210 0011247889999999999886677653331
Q ss_pred -CcccccchhhhcccccceEEEEe-----------cceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCccCCC
Q 013483 244 -ANDFGSEIIPASANEQFLKAYLF-----------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 311 (442)
Q Consensus 244 -~~~~~~~~l~~~i~~~~i~~~~~-----------~g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (442)
..++..++++.++++++++++.+ +++|.|++|+++|.+|++.++...+...++.+.+.+++.+.+.++
T Consensus 229 ~~~~~~~d~l~~li~~g~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~ 308 (420)
T 3brk_X 229 SSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPP 308 (420)
T ss_dssp --------CTTHHHHHSCEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCCC
T ss_pred ccccchHHHHHHHhhhCcEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeeccccCCC
Confidence 22455688888888779999999 889999999999999999999877666677777888889999999
Q ss_pred cee-c-----CCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCC
Q 013483 312 SKI-D-----DSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 385 (442)
Q Consensus 312 ~~i-~-----~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 385 (442)
+.+ + ++.+.++.||++|+|.++.|.+|+||++|.|+++|.|.++++..+ +.||++
T Consensus 309 ~~i~~~~~~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~-------------------~~i~~~ 369 (420)
T 3brk_X 309 AKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPS-------------------VKIGRH 369 (420)
T ss_dssp CEEECBCSSCBCEEESCEECSSCEEESCEEESCEECTTCEECTTCEEEEEEECTT-------------------CEECTT
T ss_pred cEEecccccCCcEecCCEECCCCEEcCCEEeCcEEcCCCEECCCCEEcceEEcCC-------------------CEECCC
Confidence 999 4 567778999999999777888999999999999999997665444 999999
Q ss_pred cEeeeeEeCCCcEECCCeEEccC
Q 013483 386 TKIKECIIDKNARIGKNVIIANS 408 (442)
Q Consensus 386 ~~i~~~~ig~~~~ig~~~~~~~~ 408 (442)
|.|.+|+||++|.||+++++.+.
T Consensus 370 ~~i~~~~ig~~~~i~~~~~i~~~ 392 (420)
T 3brk_X 370 AQLSNVVIDHGVVIPEGLIVGED 392 (420)
T ss_dssp CEEEEEEECTTCEECTTCEESSC
T ss_pred CEEeceEECCCCEECCCCEEeCC
Confidence 99999999999999999999853
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-47 Score=387.61 Aligned_cols=389 Identities=18% Similarity=0.224 Sum_probs=268.8
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
+.++.+||||||+||||+|+| ||+|+||+|+ |||+|+|++|.++|+++|+|+++|+.+++++++.+... .+
T Consensus 10 ~~~~~vvILAaG~GtRm~~~~---pK~l~pv~gk-p~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~~-----~~ 80 (501)
T 3st8_A 10 PGDTAVLVLAAGPGTRMRSDT---PKVLHTLAGR-SMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELAD-----TL 80 (501)
T ss_dssp --CEEEEEEECSCCGGGCCSS---CGGGCEETTE-EHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHHH-----HH
T ss_pred CCCceEEEECCcCcccCCCCC---CHHHeEECCh-hHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHHH-----hc
Confidence 456889999999999999976 9999999999 99999999999999999999999999999999975321 11
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeec-CHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~~~~~~~~~tl~~ 163 (442)
+.. ++++ .|. +++||++|++++++++.+ ...+++++++||. ++.. .+.+++++|+..++++|+++
T Consensus 81 ~~~-i~~~--~q~-------~~lGTa~Av~~a~~~l~~---~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~ 147 (501)
T 3st8_A 81 GRT-IDVA--LQD-------RPLGTGHAVLCGLSALPD---DYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLT 147 (501)
T ss_dssp TSC-CEEE--ECS-------SCCCHHHHHHHHHTTSCT---TCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCc-EEEE--EcC-------CCCCcHHHHHHHHHHhcc---ccccceeeecCcceeecHHHHHHHHHHHhhccccceEee
Confidence 111 2222 233 258999999999998864 1246899999998 5544 48899999999999999999
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+.++ +..||.+..|+++++..+.||++.+..+. ..+++++|+|+|++++|..+++.....
T Consensus 148 ~~~~d--p~~yG~i~~~~~g~v~~ivEk~~~~~~~~-----------------~i~~in~Giy~f~~~~l~~~l~~l~~~ 208 (501)
T 3st8_A 148 TTLDD--PFGYGRILRTQDHEVMAIVEQTDATPSQR-----------------EIREVNAGVYAFDIAALRSALSRLSSN 208 (501)
T ss_dssp EECSC--CTTSCEEEECTTCCEEEEECGGGCCHHHH-----------------HCCEEEEEEEEEEHHHHHHHHTTCCCC
T ss_pred eccCC--chhccccccccceeEEeeccccCCChhhc-----------------cceeeeceeeeecchhHHHhhhhhccc
Confidence 98876 78999999999999999999987654211 246889999999999998887764432
Q ss_pred ---Ccccccchhhhccc-ccceEEEEecceeee--cCChHHHHHHhhhhhcCC-------------CCccccCCCCcccc
Q 013483 244 ---ANDFGSEIIPASAN-EQFLKAYLFNDYWED--IGTIRSFFEANLALTAHP-------------PMFSFYDATKPIYT 304 (442)
Q Consensus 244 ---~~~~~~~~l~~~i~-~~~i~~~~~~g~~~d--i~t~~~~~~an~~~l~~~-------------~~~~~~~~~~~~~~ 304 (442)
...+..+++..+.. +..+..+.....|.. +++...+.++...+..+. +....+.+...+..
T Consensus 209 n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~ 288 (501)
T 3st8_A 209 NAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGR 288 (501)
T ss_dssp STTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECT
T ss_pred ccccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECC
Confidence 12223444544444 456777777665544 445555544433322110 11122333344444
Q ss_pred cCccCCCceec-------------CCceeeeEEcCCCEEeceEEeeeEEcCCcEEC------CCCEEeceEEECCccccc
Q 013483 305 SRRNLPPSKID-------------DSKIVDSIISHGSFITSSFIEHSVVGIRSRIN------ANVHLKDTMMLGADFYET 365 (442)
Q Consensus 305 ~~~~~~~~~i~-------------~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~------~~~~i~~~~~~~~~~~~~ 365 (442)
++.|++.+.+. ++.+.++.++.++.+..+.+..+.+|+++.|+ +++.|++.+.+|++.++.
T Consensus 289 dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik 368 (501)
T 3st8_A 289 DTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVK 368 (501)
T ss_dssp TCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEEE
T ss_pred cceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeEEEc
Confidence 44444444442 22222333444433332223333333333333 334444444444322221
Q ss_pred hhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCC
Q 013483 366 DAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDG 439 (442)
Q Consensus 366 ~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~ 439 (442)
.+..+++ +.|++.++|++|+||+||.||++|++.|++++.++ .+||++++||+++.+ ||++++||+|
T Consensus 369 ----~s~Ig~g---skI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ag 441 (501)
T 3st8_A 369 ----NSTIGTG---TKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAG 441 (501)
T ss_dssp ----SCEECTT---CEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEECTTCEECTT
T ss_pred ----cceecCC---cEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEECCCCEECCC
Confidence 1223333 78888888899999999999999999999999997 589999999999887 9999999999
Q ss_pred ccC
Q 013483 440 FVI 442 (442)
Q Consensus 440 ~~i 442 (442)
|+|
T Consensus 442 s~v 444 (501)
T 3st8_A 442 TVV 444 (501)
T ss_dssp CEE
T ss_pred CEE
Confidence 985
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-44 Score=363.61 Aligned_cols=383 Identities=21% Similarity=0.277 Sum_probs=269.3
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (442)
.-+|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++++++++|++++..+++.+++.+ +
T Consensus 11 ~~~~vIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~~------~----- 75 (468)
T 1hm9_A 11 SNFAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG------Q----- 75 (468)
T ss_dssp CEEEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSSS------S-----
T ss_pred CCcEEEEcCCCCccCCC---CCCcEeeEECCc-cHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhCC------C-----
Confidence 35799999999999984 689999999999 99999999999999999999999887666555421 1
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe--eeecCHHHHHHHHHHcCCcEEEEEee
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
+.++. +. +..|++++++.++.++.. ..++|++++||+ +...++.++++.|++.++++++++.+
T Consensus 76 --i~~v~--~~-------~~~G~~~sl~~a~~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~ 140 (468)
T 1hm9_A 76 --TEFVT--QS-------EQLGTGHAVMMTEPILEG----LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAE 140 (468)
T ss_dssp --SEEEE--CS-------SCCCHHHHHHTTHHHHTT----CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred --cEEEe--CC-------ccCChHHHHHHHHHHhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEec
Confidence 22222 11 136999999999988852 137899999999 44566899999999888888988877
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC--
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-- 243 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-- 243 (442)
..+ +..|+.+..|+++++..+.|||...... ..+++.++|+|+|++++|.+++++....
T Consensus 141 ~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~ 201 (468)
T 1hm9_A 141 TDN--PFGYGRIVRNDNAEVLRIVEQKDATDFE-----------------KQIKEINTGTYVFDNERLFEALKNINTNNA 201 (468)
T ss_dssp CSC--CTTSCEEEECTTCCEEEEECTTTCCTTG-----------------GGCCEEEEEEEEEEHHHHHHHHTTCCSCST
T ss_pred cCC--CCceeEEEECCCCCEEEEEECCCCChHH-----------------hcCeEEEEEEEEEEHHHHHHHHHhhccccC
Confidence 655 5679999888889999999987532110 1246889999999999776666654332
Q ss_pred -Ccccccchhhhcccc-cceEEEEecceeee--cCChHHHHHHhhhhhcCC------CCcc-------ccCCCCccc---
Q 013483 244 -ANDFGSEIIPASANE-QFLKAYLFNDYWED--IGTIRSFFEANLALTAHP------PMFS-------FYDATKPIY--- 303 (442)
Q Consensus 244 -~~~~~~~~l~~~i~~-~~i~~~~~~g~~~d--i~t~~~~~~an~~~l~~~------~~~~-------~~~~~~~~~--- 303 (442)
...+..++++.+++. .++++|.++++|.+ ++|++||.+|+..+..+. .... .+++.+.+.
T Consensus 202 ~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ 281 (468)
T 1hm9_A 202 QGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEV 281 (468)
T ss_dssp TCSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEECTTC
T ss_pred CCeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEECCCC
Confidence 123346788888874 58999999999977 559999999987654321 1111 122222222
Q ss_pred ---------ccCccCCCcee-cCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhh--hh
Q 013483 304 ---------TSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEV--AS 371 (442)
Q Consensus 304 ---------~~~~~~~~~~i-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~--~~ 371 (442)
+.+.+++++.| .++.|.++.||++|.|+.+.+.+++||++|.|++++.|.+.+++|++..+.+... .+
T Consensus 282 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~ 361 (468)
T 1hm9_A 282 QIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGS 361 (468)
T ss_dssp EECSSCEEESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESC
T ss_pred EECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeee
Confidence 23333333333 3344445556666666544555677777777777777765555555433322110 11
Q ss_pred hhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 372 LLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 372 ~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
..+++ +.|++.+.+++++||++|.||+++++.+..++.++ ++||+++|||.+++| ||++++||+||+|
T Consensus 362 ~Ig~~---~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~~~s~v 435 (468)
T 1hm9_A 362 SIGEN---TKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTI 435 (468)
T ss_dssp EECTT---CEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCEE
T ss_pred EEcCC---cEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCCCEECCCCEE
Confidence 11111 33334444466789999999999999887777664 689999999999887 9999999999875
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=358.50 Aligned_cols=354 Identities=19% Similarity=0.298 Sum_probs=269.8
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|+|||||||.|+||+|||..+||+|+|++|+ |||+|++++|.++++++++|+++++ +.+++.+.. .+
T Consensus 1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~---~~------ 67 (401)
T 2ggo_A 1 MKAFILAAGSGERLEPITHTRPKAFVPILSK-PLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKL---KE------ 67 (401)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHC---TT------
T ss_pred CeEEEEcCcCccccCcccCCCCcceeeECCE-eHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccC---Cc------
Confidence 6899999999999999999999999999999 9999999999999999999999866 666665431 11
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeee--cCHHHHHHHHHHcCCcEEEEEeec
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~--~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
+.++.... ++.|++++|+.+.+ .++|++++||+++. .++.++++ .++.++++.+.
T Consensus 68 -i~~~~~~~--------~~~g~~~~l~~~~~---------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~ 124 (401)
T 2ggo_A 68 -ISIVTQKD--------DIKGTGAAILSAKF---------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKV 124 (401)
T ss_dssp -CEEEECCT--------TCCBSTTTGGGCCC---------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEEC
T ss_pred -EEEEeCCC--------CCCChHHHHHHhcc---------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEc
Confidence 22332111 13688888877653 27899999999876 34666665 35678888776
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-C-
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A- 244 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~- 244 (442)
++ +..|+.+..++++++..+.|||..+. ++++++|+|+|++++|. .+++..+. .
T Consensus 125 ~~--~~~~~~v~~~~~g~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~ 180 (401)
T 2ggo_A 125 SN--PKDYGVLVLDNQNNLSKIIEKPEIPP---------------------SNLINAGIYKLNSDIFT-YLDKISISERG 180 (401)
T ss_dssp SC--CSSSCEEEECTTSSEEEEECSCSSCS---------------------CSEEEEEEEEEETHHHH-HHHHSCCCSSS
T ss_pred CC--CcceeEEEECCCCeEEEEEECCCCCC---------------------CcEEEEEEEEEcHHHHH-HhhhcCcCCCC
Confidence 54 56788888888899999999886432 36889999999999885 45543221 1
Q ss_pred cccccchhhhccc-ccceEEEEecceeeecCChHHHHHHhhhhhcCCCC---ccccCCCCcccccCccCCCcee-cCCce
Q 013483 245 NDFGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPM---FSFYDATKPIYTSRRNLPPSKI-DDSKI 319 (442)
Q Consensus 245 ~~~~~~~l~~~i~-~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~i-~~~~i 319 (442)
.....++++.+ . +.++..+..+++|.|++||+||.+|++.++.+... ...+++.+.+.+.+.+++.+.+ +++.|
T Consensus 181 ~~~~~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i 259 (401)
T 2ggo_A 181 ELELTDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYI 259 (401)
T ss_dssp CBCHHHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEE
T ss_pred ceEHHHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEE
Confidence 11124677766 4 35899999989999999999999999988765431 1234455555666666666666 45555
Q ss_pred e-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCC
Q 013483 320 V-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKN 396 (442)
Q Consensus 320 ~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~ 396 (442)
. ++.||++|.|+ .+.| .+++||++|.|++++.|+++++..+ +.|++++.|++++||++
T Consensus 260 ~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~Ig~~ 320 (401)
T 2ggo_A 260 EGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEG-------------------SKIPHLSYVGDSVIAED 320 (401)
T ss_dssp ESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTT-------------------CEEEESCEEESCEECTT
T ss_pred eCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCC-------------------cEECCCceEcceEECCC
Confidence 4 58888999887 6777 4789999999999999976655444 89999999999999999
Q ss_pred cEECCCeEEccCCC------------------cccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 397 ARIGKNVIIANSEG------------------IQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 397 ~~ig~~~~~~~~~~------------------~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
|.||+++++.+... .....+||+++|||++++| ||++++|++||+|
T Consensus 321 ~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv 389 (401)
T 2ggo_A 321 VNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVV 389 (401)
T ss_dssp CEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred cEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCCcEECCCCeE
Confidence 99999999984211 1135689999999999887 8999999998874
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-44 Score=362.71 Aligned_cols=381 Identities=16% Similarity=0.221 Sum_probs=258.0
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
++|.|||||||.|+||+| .+||+|+|++|+ |||+|+++.|.++++++++|++++..+++.+++.+. +
T Consensus 7 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~~-----~---- 73 (459)
T 4fce_A 7 SSMSVVILAAGKGTRMYS---DLPKVLHPLAGK-PMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLADP-----S---- 73 (459)
T ss_dssp CCEEEEEEECCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-------------
T ss_pred CcceEEEECCCCCccCCC---CCCcccCeeCCe-eHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhccC-----C----
Confidence 479999999999999995 789999999999 999999999999999999999998877777776431 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe--eeecCHHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~~~~~~~~~tl~~~ 164 (442)
++++. +. +..|++++++.+++++.. .++|++++||+ +....+.++++.|++ .++++++.
T Consensus 74 ---~~~v~--~~-------~~~g~~~~i~~~~~~~~~-----~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~ 134 (459)
T 4fce_A 74 ---LNWVL--QA-------EQLGTGHAMQQAAPHFAD-----DEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTV 134 (459)
T ss_dssp ----CEEE--CS-------SCCCHHHHHHHHGGGSCT-----TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEE
T ss_pred ---cEEEe--CC-------CCCCcHHHHHHHHHhcCC-----CCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEE
Confidence 22222 11 136999999999988863 47999999999 444568899988764 55677776
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~- 243 (442)
+..+ +..|+.+..| ++++..+.||+...... ..++++++|+|+|+++.|.++++.....
T Consensus 135 ~~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 194 (459)
T 4fce_A 135 KLDN--PSGYGRIVRE-NGDVVGIVEHKDASDAQ-----------------REINEINTGILVANGRDLKRWLSLLDNNN 194 (459)
T ss_dssp ECSC--CTTSCEEEEE-TTEEEEEECGGGCCTTG-----------------GGCCEEEEEEEEEEHHHHHHHHHTCCCCS
T ss_pred ecCC--CCcccEEEeC-CCcEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHHhCccc
Confidence 6654 5779988887 78999999986532210 1346889999999999887777654221
Q ss_pred --Ccccccchhhhcccc-cceEEEEeccee--eecCChHHHHHHhhhhhcCC------CCccc-------cCCCCccccc
Q 013483 244 --ANDFGSEIIPASANE-QFLKAYLFNDYW--EDIGTIRSFFEANLALTAHP------PMFSF-------YDATKPIYTS 305 (442)
Q Consensus 244 --~~~~~~~~l~~~i~~-~~i~~~~~~g~~--~di~t~~~~~~an~~~l~~~------~~~~~-------~~~~~~~~~~ 305 (442)
...+..+.++.+++. .+++++..+++| ++++||+||..|+..+..+. ..... +++.+.+..+
T Consensus 195 ~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~ 274 (459)
T 4fce_A 195 AQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRD 274 (459)
T ss_dssp TTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSS
T ss_pred cCCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCC
Confidence 222345677777664 689999998765 67999999999987664331 01111 1111222222
Q ss_pred CccCCC------------cee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhh--
Q 013483 306 RRNLPP------------SKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEV-- 369 (442)
Q Consensus 306 ~~~~~~------------~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~-- 369 (442)
+.|++. +.| .++.|.++.||++|.|+ ++.+.+++||++|.|++++.|...+.+|++..+.+...
T Consensus 275 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~ 354 (459)
T 4fce_A 275 ITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIK 354 (459)
T ss_dssp CEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEE
T ss_pred cEECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEe
Confidence 223322 222 23333344455555554 44444445555555554444443333343322222100
Q ss_pred hhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 370 ASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 370 ~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.+...++ +.|++.+++++++||++|.||+++++.+..++.++ ++||+++|||.+++| ||++++||+||+|
T Consensus 355 ~~~i~~~---~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~igagsvV 430 (459)
T 4fce_A 355 KARLGKG---SKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTV 430 (459)
T ss_dssp EEEECTT---CEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEE
T ss_pred eeEEcCC---CEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 1111111 34444555567899999999999999998888886 699999999999987 9999999999875
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-42 Score=349.30 Aligned_cols=380 Identities=18% Similarity=0.253 Sum_probs=263.4
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
+++.|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++++++++|++++..+++.+++.+. +
T Consensus 4 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-----~---- 70 (456)
T 2v0h_A 4 KALSAVILAAGKGTRMYS---DLPKVLHTIAGK-PMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANE-----Q---- 70 (456)
T ss_dssp CCEEEEEECCCCCGGGCS---SSCGGGSEETTE-EHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTTC-----C----
T ss_pred CcceEEEECCCCCcccCC---CCCccccEECCc-cHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhcC-----C----
Confidence 568999999999999984 689999999999 999999999999999999999998777777665321 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe--eeecCHHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~~~~~~~~~tl~~~ 164 (442)
++++. +. .+.|++++++.+++++.. .++|++++||+ +...++.++++.|++ +++++++.
T Consensus 71 ---~~~v~--~~-------~~~g~~~~~~~~~~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~ 131 (456)
T 2v0h_A 71 ---VNWVL--QT-------EQLGTAHAVQQAAPFFKD-----NENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTV 131 (456)
T ss_dssp ---CEEEE--CS-------CCCCHHHHHHHHGGGCCT-----TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEE
T ss_pred ---cEEEe--CC-------CCCCcHHHHHHHHHhcCC-----CCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEe
Confidence 22222 11 136999999999988853 37999999999 344568899988865 56777777
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~- 243 (442)
+..+ +..|+.+..| ++++..+.||+...... ..++++++|+|+|+++.|.++++.....
T Consensus 132 ~~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 191 (456)
T 2v0h_A 132 NLDN--PTGYGRIIRE-NGNVVAIVEQKDANAEQ-----------------LNIKEVNTGVMVSDGASFKKWLARVGNNN 191 (456)
T ss_dssp ECSS--CTTSCEEEEE-TTEEEEEECTTTCCHHH-----------------HTCCEEEEEEEEEEHHHHHHHHTTCCCCS
T ss_pred ecCC--CCccceEEEc-CCcEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhcccc
Confidence 6654 5678888887 78999999987632210 0236789999999999776676653322
Q ss_pred --Ccccccchhhhcccc-cceEEEEecce--eeecCChHHHHHHhhhhhcCC------CCccccCC-CCcccccCccCCC
Q 013483 244 --ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDA-TKPIYTSRRNLPP 311 (442)
Q Consensus 244 --~~~~~~~~l~~~i~~-~~i~~~~~~g~--~~di~t~~~~~~an~~~l~~~------~~~~~~~~-~~~~~~~~~~~~~ 311 (442)
...+..++++.++.. .++..+..+++ |++++||+||.+|++.+..+. ......++ ...+.+++.+++.
T Consensus 192 ~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~ 271 (456)
T 2v0h_A 192 AQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKD 271 (456)
T ss_dssp TTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECSS
T ss_pred ccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECCC
Confidence 122336777776664 57889988654 579999999999998765431 11222333 2344455555555
Q ss_pred cee-cCCcee-eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhh---hhhhcCCCcceEeCC-
Q 013483 312 SKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEV---ASLLAEGRVPVGIGE- 384 (442)
Q Consensus 312 ~~i-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~- 384 (442)
+.| +++.|. ++.||++|.|+ ++.|.+++||++|.|++++.|.+ +.+|+++.+.+... ....+++ +.||+
T Consensus 272 ~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~-~~ig~~~~I~~~~~i~~~~~ig~~---~~ig~~ 347 (456)
T 2v0h_A 272 VEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLED-SIVGEKAAIGPFSRLRPGAELAAE---THVGNF 347 (456)
T ss_dssp CEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEE-EEECTTCEECSSEEECTTCEECTT---CEEEEE
T ss_pred CEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEcc-CcCCCCcEECCccEECCCCEECCC---CEECCC
Confidence 555 344442 56777777777 66666777777777777666643 23344333222110 0000000 22222
Q ss_pred ----------Cc------EeeeeEeCCCcEECCCeEEccCCCccc-ceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 385 ----------NT------KIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 385 ----------~~------~i~~~~ig~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++ ++++++||++|.||+++++.+..+..+ ..+||+++|||++++| ||++++||+||+|
T Consensus 348 ~~i~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~s~v 427 (456)
T 2v0h_A 348 VEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTI 427 (456)
T ss_dssp EEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEECTTCEE
T ss_pred CEEeccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEECCCCEE
Confidence 22 223468899999999999988777666 4689999999999887 8999999999875
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=278.97 Aligned_cols=244 Identities=20% Similarity=0.278 Sum_probs=193.6
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcc---
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT--- 84 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~--- 84 (442)
.|+|||||||.||||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++.+.+.+.....
T Consensus 2 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~ 80 (281)
T 3juk_A 2 IKKCLFPAAGYGTRFLPITKTIPKEMLPIVDK-PLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTN 80 (281)
T ss_dssp CCEEEEECCSCCGGGTTGGGTSCGGGCBSSSS-BHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------CC
T ss_pred ceEEEEECCcCCcccCccccCCCcccceECCE-EHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhccc
Confidence 58999999999999999999999999999999 99999999999999999999999998899888754321111000
Q ss_pred ------------cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-----HHH
Q 013483 85 ------------FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-----YMD 147 (442)
Q Consensus 85 ------------~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-----l~~ 147 (442)
++ +.+....+.. +.|++++++.++.++. .++|+|++||++++.+ +.+
T Consensus 81 ~~~~~~~~~~~~~~---~~i~~~~~~~-------~~Gt~~al~~a~~~l~------~~~~lv~~~D~~~~~~~~~~~l~~ 144 (281)
T 3juk_A 81 KENALKSIRNIIEK---CCFSYVRQKQ-------MKGLGHAILTGEALIG------NEPFAVILADDLCISHDHPSVLKQ 144 (281)
T ss_dssp HHHHHHHHHHHHHH---CEEEEEECSS-------CCCHHHHHHHTHHHHC------SSCEEEECTTEEEECTTSCCHHHH
T ss_pred chhhhhhhhccccC---ccEEEEecCC-------CCCcHHHHHHHHHHcC------CCCEEEEeCCeeccCccchHHHHH
Confidence 11 2222222321 4799999999999986 3799999999999988 999
Q ss_pred HHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcC--CC--ceEEEEeCCCcccccccccccccccccccccccccceeee
Q 013483 148 FVQNHRQSGADITISCLPMDDSRASDFGLMKINN--EG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASM 223 (442)
Q Consensus 148 ~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~--~~--~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (442)
+++.|+++++ .++.+...+..++..||++..|+ ++ +|..+.|||..... .++++++
T Consensus 145 l~~~~~~~~~-~~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~~~-------------------~~~~~~~ 204 (281)
T 3juk_A 145 MTSLYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDA-------------------PSNLAVI 204 (281)
T ss_dssp HHHHHHHHCS-CEEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEESCCTTTC-------------------SCSEEEE
T ss_pred HHHHHHHcCC-CEEEEEEechhhcccCCEEEeccCCCCceEEeEEEECcCCCCC-------------------CcceeEE
Confidence 9999988877 67777766555578999998876 77 99999999974221 2468899
Q ss_pred eEEEEeHHHHHHHHhhhCCC--CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcC
Q 013483 224 GVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (442)
Q Consensus 224 Giy~~~~~~l~~~l~~~~~~--~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~ 289 (442)
|+|+|++++|. .+++..+. ......++++.++.++++++|.++++|.|||||++|.+|++.++..
T Consensus 205 GiYi~~~~~l~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~ 271 (281)
T 3juk_A 205 GRYILTPDIFE-ILSETKPGKNNEIQITDALRTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKK 271 (281)
T ss_dssp EEEEECTTHHH-HHHTCCCCGGGSCCHHHHHHHHHHHSCCEEEECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHH-HHHhcCCCCCCceeHHHHHHHHHhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 99999999985 55553221 1111267888888878999999999999999999999999998754
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=262.31 Aligned_cols=236 Identities=22% Similarity=0.379 Sum_probs=190.7
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccCh-hhHHHHHHhhccCCCCccc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~ 85 (442)
++|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++.. +++.+++... ..+
T Consensus 23 ~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~~------~~~ 95 (269)
T 4ecm_A 23 NAMKGIILAGGTGSRLYPITKVTNKHLLPVGRY-PMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGSG------QEF 95 (269)
T ss_dssp -CEEEEEECCSCCGGGTTTTSSSCGGGSEETTE-EHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS------GGG
T ss_pred cCcEEEEECCCCccccccccCCCCceecEECCE-EHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhhc------ccc
Confidence 468999999999999999999999999999999 99999999999999999999999764 6777776432 223
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEee
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
+.. +.+. .+.. +.|++++|+.+..++. .++|++++||+++..++.++++.|+++++++++++.+
T Consensus 96 ~~~-i~~~--~~~~-------~~G~~~al~~a~~~~~------~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~ 159 (269)
T 4ecm_A 96 GVS-FTYR--VQDK-------AGGIAQALGLCEDFVG------NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQS 159 (269)
T ss_dssp TCE-EEEE--ECSS-------CCCHHHHHHTTHHHHT------TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEE
T ss_pred Cce-EEEe--eCCc-------cCcHHHHHHHHHHhcC------CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEE
Confidence 221 2222 2221 3699999999998886 3899999999999888999999999888899999888
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-C
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A 244 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~ 244 (442)
.++ +..||++..| +++|..+.|||..+. ++++++|+|+|++++|. .+++..+. .
T Consensus 160 ~~~--~~~~g~v~~d-~g~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~~l~-~l~~~~~~~~ 214 (269)
T 4ecm_A 160 VDD--PERFGVANIQ-NRKIIEIEEKPKEPK---------------------SSYAVTGIYLYDSKVFS-YIKELKPSAR 214 (269)
T ss_dssp CSC--GGGSEEEEEE-TTEEEEEEESCSSCS---------------------CSEEEEEEEEECTTHHH-HHTSCCBCTT
T ss_pred CCC--CCCceEEEEc-CCEEEEEEECCCCCC---------------------CcEEEEEEEEECHHHHH-hhhhcCCCCC
Confidence 765 6789998887 589999999986432 36789999999999884 55543221 1
Q ss_pred ccc-ccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCC
Q 013483 245 NDF-GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (442)
Q Consensus 245 ~~~-~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~ 290 (442)
..+ ..++++.+++.+++.++..+++|.||+||++|.+|++.+++..
T Consensus 215 ge~~l~d~l~~l~~~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~~ 261 (269)
T 4ecm_A 215 GELEITDINNWYLKRGVLTYNEMSGWWTDAGTHVSLQRANALARDIN 261 (269)
T ss_dssp SCBCHHHHHHHHHHTTCEEEEECCSCEEECSSHHHHHHHHHHTTTCC
T ss_pred CeeeHHHHHHHHHHcCCEEEEEeCCEEEeCCCHHHHHHHHHHHHhcc
Confidence 122 3678888888778999999999999999999999999987554
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=262.74 Aligned_cols=250 Identities=21% Similarity=0.319 Sum_probs=187.6
Q ss_pred CCcccccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCC
Q 013483 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG 80 (442)
Q Consensus 1 ~~~~~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~ 80 (442)
|...+++.|+|||||||.||||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++...+.+.
T Consensus 1 ~~~~~~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~ 79 (302)
T 2e3d_A 1 MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELE 79 (302)
T ss_dssp ----CCSCCEEEEECCSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHH
T ss_pred CcchhhcccEEEEECCcCcccCCccccCCCceeeEECCe-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhh
Confidence 444455679999999999999999999999999999999 9999999999999999999999988888888875421000
Q ss_pred -----C-Cc----------ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeec-
Q 013483 81 -----S-GV----------TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM- 143 (442)
Q Consensus 81 -----~-~~----------~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~- 143 (442)
. +. .++. .+.++ .+. ++.|++++++.++.++. .++|+|++||++++.
T Consensus 80 ~~l~~~~~~~~l~~~~~~~~~~~-~i~~~--~~~-------~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~ 143 (302)
T 2e3d_A 80 AMLEKRVKRQLLDEVQSICPPHV-TIMQV--RQG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEY 143 (302)
T ss_dssp HHHC----CHHHHHHHHTSCTTC-EEEEE--ECS-------SCCCHHHHHHHTHHHHC------SSCEEEECTTEEECTT
T ss_pred hhhhhccchhhhhhhhhccccCc-ceEEe--eCC-------ccCCHHHHHHHHHHHcC------CCcEEEEcCCccccCc
Confidence 0 00 0011 12222 222 13799999999999886 379999999998862
Q ss_pred -------CHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEc----CCC---ceEEEEeCCCcccccccccccccccc
Q 013483 144 -------DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN----NEG---RVLSFSEKPKGKDLKAMAVDTTVLGL 209 (442)
Q Consensus 144 -------~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d----~~~---~v~~i~ek~~~~~~~~~~~~~~~~~~ 209 (442)
++.++++.|++.++ .++.+.+.++ +..||++..+ +++ +|..|.|||.....
T Consensus 144 ~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~--~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~------------ 208 (302)
T 2e3d_A 144 ESDLSQDNLAEMIRRFDETGH-SQIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA------------ 208 (302)
T ss_dssp SSCTTTSTHHHHHHHHHHHCC-EEEEEEECSC--GGGSEEEECTTCCCCTTCEEEECEEEESCCTTTC------------
T ss_pred cccchHHHHHHHHHHHHhcCC-cEEEEEEccC--CCCccEEEecccccCCCCceeEEEEEECCCCCcc------------
Confidence 68999999988776 7777776643 6789988763 456 89999999863221
Q ss_pred cccccccccceeeeeEEEEeHHHHHHHHhhhCCC--CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 210 SKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 210 ~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~--~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
.++++++|+|+|++++|. .+++..+. ......++++.+++.+++.++.++++|.|+|||++|.+|++.++
T Consensus 209 -------~~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~ 280 (302)
T 2e3d_A 209 -------PSNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_dssp -------SCSEEEEEEEEECTTHHH-HHTCCCC----CCCHHHHHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHH
T ss_pred -------ccceEEEEEEEECHHHHH-HHHhhCCCCCCceehHHHHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHH
Confidence 246889999999999884 55543332 11223577888777669999999999999999999999997775
Q ss_pred cCC
Q 013483 288 AHP 290 (442)
Q Consensus 288 ~~~ 290 (442)
...
T Consensus 281 ~~~ 283 (302)
T 2e3d_A 281 IRH 283 (302)
T ss_dssp HHC
T ss_pred hcC
Confidence 443
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=259.15 Aligned_cols=248 Identities=20% Similarity=0.247 Sum_probs=171.7
Q ss_pred cccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccC-----
Q 013483 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNY----- 79 (442)
Q Consensus 5 ~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~----- 79 (442)
....|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++...+.+
T Consensus 11 ~~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~ 89 (297)
T 2ux8_A 11 IKPLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDR-PLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMA 89 (297)
T ss_dssp CCCCCEEEEEECCCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHH
T ss_pred ccCccEEEEECCCCccccCccccCCCceeeeECCe-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhh
Confidence 35678999999999999999999999999999999 999999999999999999999998888888887532100
Q ss_pred CCC---------cccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeee---cCHHH
Q 013483 80 GSG---------VTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR---MDYMD 147 (442)
Q Consensus 80 ~~~---------~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~---~~l~~ 147 (442)
..+ ...+. .+.++. +. ++.|++++++.++.++. .++|+|++||++++ .++.+
T Consensus 90 ~~~~~~~~~~~~~~~g~-~i~~~~--~~-------~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~l~~ 153 (297)
T 2ux8_A 90 ARGKSLDVLDGTRLKPG-NIAYVR--QQ-------EPMGLGHAVWCARDIVG------DEPFAVLLPDDFMFGQPGCLKQ 153 (297)
T ss_dssp TTTCCGGGGTTSCCSTT-SEEEEE--CC-------SCCCHHHHHHTTHHHHC------SSCEEEECTTEEEESSSCHHHH
T ss_pred hccchhhhhhhcccCCC-ceEEEe--CC-------CCCChHHHHHHHHHHcC------CCcEEEEeCCeecCCChHHHHH
Confidence 000 00111 133322 21 13799999999998886 37999999999887 45899
Q ss_pred HHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcC--CC--ceEEEEeCCCcccccccccccccccccccccccccceeee
Q 013483 148 FVQNHRQSGADITISCLPMDDSRASDFGLMKINN--EG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASM 223 (442)
Q Consensus 148 ~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~--~~--~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (442)
+++.|++.++ .++.+.+.+..++..||++..|+ ++ +|..|.|||..... .++++++
T Consensus 154 l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~-------------------~~~~~~~ 213 (297)
T 2ux8_A 154 MVDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTA-------------------PSNLSVI 213 (297)
T ss_dssp HHHHHHHHCS-EEEEEC-----------CCCCCCBCSSEEEC---------------------------------CCCEE
T ss_pred HHHHHHhcCC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCC-------------------CccEEEE
Confidence 9999987765 57766665433467798887653 45 89999998853211 2367899
Q ss_pred eEEEEeHHHHHHHHhhhCCC--CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCC
Q 013483 224 GVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (442)
Q Consensus 224 Giy~~~~~~l~~~l~~~~~~--~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~ 290 (442)
|+|+|++++|. .+++..+. ......++++.++++.+++++.++++|.|||||++|.+|++.++...
T Consensus 214 Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~~ 281 (297)
T 2ux8_A 214 GRYILQPEVMR-ILENQGKGAGGEIQLTDAMQRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVALSR 281 (297)
T ss_dssp EEEEECTHHHH-HHHHTC--------CCTTGGGGTTTSCEEEEECSSEEEETTSHHHHHHHHHHHHHHC
T ss_pred EEEEECHHHHH-HHHhhCCCCCCeeEHHHHHHHHHhcCCEEEEEecceEEeCCCHHHHHHHHHHHHhcC
Confidence 99999999874 55554332 11123678888887779999999999999999999999998876543
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=250.00 Aligned_cols=245 Identities=25% Similarity=0.334 Sum_probs=177.9
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc--
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF-- 85 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~-- 85 (442)
+|+|||||||.||||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++.+...+..+..+
T Consensus 2 ~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (259)
T 1tzf_A 2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHM 80 (259)
T ss_dssp CCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEG
T ss_pred CcEEEEECCCCcccCCCccCCCCccccEECCE-EHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhcccccccccccc
Confidence 58999999999999999999999999999999 999999999999999999999999888888888653200001111
Q ss_pred CCceEEEecccccCCc---CCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEE
Q 013483 86 GDGCVEVLAATQTPGE---AGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITIS 162 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~---~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~ 162 (442)
....++++.....+.. ..+..+.|++++++.++.++.. .++|++++||+++..++.++++.|+++++.+|+.
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~~-----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~ 155 (259)
T 1tzf_A 81 AENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKD-----DEAFLFTYGDGVADLDIKATIDFHKAHGKKATLT 155 (259)
T ss_dssp GGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTT-----SSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEE
T ss_pred cccceeeeeccccccceeeeecccccCcHHHHHHHHHhcCC-----CCcEEEEECCEecccCHHHHHHHHHHhCCeEEEE
Confidence 0001222210000000 0001136999999999988842 3789999999998889999999998888887775
Q ss_pred EeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 013483 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (442)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~ 242 (442)
..+ . +..||++..| +++|..|.|||... .+++++|+|+|++++|. .+++
T Consensus 156 ~~~--~--~~~~g~v~~~-~g~v~~~~ekp~~~----------------------~~~~~~Giy~~~~~~l~-~l~~--- 204 (259)
T 1tzf_A 156 ATF--P--PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVID-LIDN--- 204 (259)
T ss_dssp EEC--C--CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGGG-GCCS---
T ss_pred Eec--C--CCCccEEEEc-CCEEEEEEecCCCC----------------------CceEEEEEEEeCHHHHH-hhcc---
Confidence 432 2 5679988887 78999999988642 25789999999999873 3322
Q ss_pred CCcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcC
Q 013483 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (442)
Q Consensus 243 ~~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~ 289 (442)
....+..+.++.+++++++.++..+++|.|++|++||.++++.+...
T Consensus 205 ~~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~ 251 (259)
T 1tzf_A 205 DATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKG 251 (259)
T ss_dssp TTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHcCCEEEEEeCcEEEeCCCHHHHHHHHHHHhcC
Confidence 12234467888888777899999999999999999999999988753
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-31 Score=255.05 Aligned_cols=248 Identities=20% Similarity=0.265 Sum_probs=185.3
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCC------
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG------ 80 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~------ 80 (442)
+.|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++...+.|.
T Consensus 11 ~~~~aVIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~ 89 (323)
T 2pa4_A 11 AVKTVVVPAAGLGTRFLPATKTVPKELLPVVDT-PGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMER 89 (323)
T ss_dssp -CCEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHT
T ss_pred cceEEEEECCCCccccCccccCCCceeeeECCE-EHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhcc
Confidence 458999999999999999999999999999999 9999999999999999999999998888887764311000
Q ss_pred ---------CCcccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeee--cCHHHHH
Q 013483 81 ---------SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFV 149 (442)
Q Consensus 81 ---------~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~--~~l~~~l 149 (442)
....++. .+.++. +.. +.|++++++.++.++.. ..+.|+|++||++++ .++.+++
T Consensus 90 ~~~~~~~~~~~~~~g~-~i~~~~--~~~-------~~Gt~~al~~a~~~l~~----~~d~~lv~~~D~~~~~~~~l~~l~ 155 (323)
T 2pa4_A 90 GKTDQVEIIRRAADLI-KAVPVT--QDK-------PLGLGHAVGLAESVLDD----DEDVVAVMLPDDLVLPTGVMERMA 155 (323)
T ss_dssp TCHHHHHHTTHHHHHC-EEEEEE--CSS-------CCCHHHHHHTTGGGSCS----SCCEEEEECTTEEEESSCHHHHHH
T ss_pred chhhhhhhhhccccCc-ceEEEe--CCc-------cCCcHHHHHHHHHHhcC----CCCeEEEEeCCcccCchHHHHHHH
Confidence 0000111 122222 221 36999999999988752 013399999999886 4589999
Q ss_pred HHHHHcCCcEEEEEeecCCCcCCcccEEEEc----CCC--ceEEEEeCCCcccccccccccccccccccccccccceeee
Q 013483 150 QNHRQSGADITISCLPMDDSRASDFGLMKIN----NEG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASM 223 (442)
Q Consensus 150 ~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d----~~~--~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (442)
+.|++.++ .++.+.+.+..++..||++..| +++ +|..|.|||..... .+++.++
T Consensus 156 ~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~~~-------------------~~~~~~~ 215 (323)
T 2pa4_A 156 QVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDA-------------------PSRLAAT 215 (323)
T ss_dssp HHHHTTCS-EEEEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTTTC-------------------SCSEEEE
T ss_pred HHHHhcCC-cEEEEEEecccccCCccEEEeCCcccCCCceeEEEEEECCCCccc-------------------cccEEEE
Confidence 99987665 5677666654446789998876 454 89999999853221 2467899
Q ss_pred eEEEEeHHHHHHHHhhhCCCC-ccc-ccchhhhcccc-cceEEEEecceeeecCChHHHHHHhhhhhcCC
Q 013483 224 GVYLFKKEILLNLLRWRFPTA-NDF-GSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (442)
Q Consensus 224 Giy~~~~~~l~~~l~~~~~~~-~~~-~~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~ 290 (442)
|+|+|++++|. .+++..+.. ..+ ..++++.+++. .++.++.++++|.|||||++|.+|++.++...
T Consensus 216 GiY~~~~~~~~-~l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~~~ 284 (323)
T 2pa4_A 216 GRYLLDRKIFD-ALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSH 284 (323)
T ss_dssp EEEEEETHHHH-HHHHCCCCGGGCCCHHHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHHTC
T ss_pred EEEEECHHHHH-HHHhhCCCCCCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhhcC
Confidence 99999999885 555533321 112 25778888775 78999999999999999999999998887544
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=246.69 Aligned_cols=233 Identities=23% Similarity=0.411 Sum_probs=181.7
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEec-cChhhHHHHHHhhccCCCCcccC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~-~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
+|++||||||.||||+|+|..+||+|+|++|+ |||+|+++.|..+|+++|+|++. +..+.+.+++.+ +.+++
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~------g~~~g 74 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGD------GSNWG 74 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT------SGGGT
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeECCE-eHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhc------ccccC
Confidence 58999999999999999999999999999999 99999999999999999998885 455677777643 22233
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeee-ecCHHHHHHHHHHcCCcEEEEEee
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~-~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
.. +.+. .+.. +.|++++++.+.+++.. ++++++.||.++ +.++.++++.|.+.+.++++++.+
T Consensus 75 ~~-i~~~--~~~~-------~~G~~~al~~a~~~i~~------~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~ 138 (293)
T 1fxo_A 75 LD-LQYA--VQPS-------PDGLAQAFLIGESFIGN------DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYH 138 (293)
T ss_dssp CE-EEEE--ECSS-------CCCGGGHHHHTHHHHTT------SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEE
T ss_pred ce-EEEe--eCCC-------CCCHHHHHHHHHHHhCC------CCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEE
Confidence 21 2222 2321 36999999999988863 789999999954 567999999998777778887777
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-C
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A 244 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~ 244 (442)
..+ +..||++..|+++++.+|.|||..+. ++++++|+|+|+++++. .+++..+. .
T Consensus 139 v~d--p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~-~~~~~~~~~~ 194 (293)
T 1fxo_A 139 VLD--PERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVD-IARDLKPSPR 194 (293)
T ss_dssp CSC--GGGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHH-HHHHCCCCTT
T ss_pred CCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCeEEEEEEEEcHHHHH-HHHhcCcccC
Confidence 665 56899999998999999999986432 36789999999999885 44443332 1
Q ss_pred ccc-ccchhhhcccccceEEEEec-ce-eeecCChHHHHHHhhhhh
Q 013483 245 NDF-GSEIIPASANEQFLKAYLFN-DY-WEDIGTIRSFFEANLALT 287 (442)
Q Consensus 245 ~~~-~~~~l~~~i~~~~i~~~~~~-g~-~~di~t~~~~~~an~~~l 287 (442)
..+ ..++++.+++.+.+.++... ++ |.|++|++||.+|+..+.
T Consensus 195 ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 240 (293)
T 1fxo_A 195 GELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 240 (293)
T ss_dssp SSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHhcCCeEEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 222 25677777777777777775 74 999999999999998765
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=250.18 Aligned_cols=256 Identities=13% Similarity=0.129 Sum_probs=185.6
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceee--cCccceehhhhhhhhhcCCcEEEEEeccCh-hhHHHHHHhhccCCCC
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPI--GGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSG 82 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi--~g~~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~ 82 (442)
|++|++||||||.|+||+| ||+|+|+ +|+ |||+|+++++.++|+++|+|++++.. +.+.+++...+.+..+
T Consensus 3 ~m~~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~-pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~ 76 (303)
T 3pnn_A 3 AMKPTLFVLAAGMGSRYGS-----LKQLDGIGPGGD-TIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKYEGRIP 76 (303)
T ss_dssp CCCCEEEEECTTCBCTTSS-----BCCCCCCSTTSC-CHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHHHTTTSC
T ss_pred CCceEEEEECCCCcccCCC-----CceEeEcCCCCe-eHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHHhccCCc
Confidence 5678999999999999997 7999999 589 99999999999999999999999985 7888888765432111
Q ss_pred cccCCceEEEeccccc------CCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHH-
Q 013483 83 VTFGDGCVEVLAATQT------PGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ- 154 (442)
Q Consensus 83 ~~~~~~~v~i~~~~~~------~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~- 154 (442)
+..+..... .....+..++||++||++++++++ ++|+|++||++++.+ +.+++++|.+
T Consensus 77 -------i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i~-------~~~lV~~gD~l~~~~~~~~l~~~~~~~ 142 (303)
T 3pnn_A 77 -------VELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIR-------EPFAVINADDFYGRNGFEVLARKLMTL 142 (303)
T ss_dssp -------EEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTCC-------SCEEEEESSCBCCHHHHHHHHHHHHTT
T ss_pred -------EEEEecccccccccccccccccccCCcHHHHHHHHHhcC-------CCEEEEECCeecCHHHHHHHHHHHHHh
Confidence 222211100 000001135899999999998884 799999999998876 8999999976
Q ss_pred --cCCcEEEEEeecCCCcCCcc-----cEEEEcCCCceEEEEeCCCccccccccccccccccccc---ccccccceeeee
Q 013483 155 --SGADITISCLPMDDSRASDF-----GLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQ---EAEEKPYIASMG 224 (442)
Q Consensus 155 --~~~~~tl~~~~~~~~~~~~~-----g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~G 224 (442)
+++++++++.+..++ ...| |.+..|++|+|+.|.|||........ ......+ .....++++++|
T Consensus 143 ~~~~~~~~v~~~~~~~~-~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~-----~~~~~~~g~~~~~~~~~~i~~G 216 (303)
T 3pnn_A 143 EGKQGEYCMVGYRVGNT-LSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGT-----ISFRDETGKICTLAEDAPVSMN 216 (303)
T ss_dssp TTCSSEEEEEEEEGGGS-CBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTE-----EEEECTTSCEEEECTTCEEEEE
T ss_pred ccccCceEEEEEECCCc-cCccCceeeeeEeeCCCCcEEEEEECCCCcccccc-----ccccccccccccCCCCCEEEEE
Confidence 567889888877652 1455 57888888999999999975311000 0000000 000135788999
Q ss_pred EEEEeHHHHHHHHhh--------hCCC--Ccccccchhhhccccc--ceEEEEecceeeecCChHHHHHHhhhhhc
Q 013483 225 VYLFKKEILLNLLRW--------RFPT--ANDFGSEIIPASANEQ--FLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 225 iy~~~~~~l~~~l~~--------~~~~--~~~~~~~~l~~~i~~~--~i~~~~~~g~~~di~t~~~~~~an~~~l~ 288 (442)
+|+|++++|..+ +. ..+. ...+..++++.+++++ ++.+|.++++|.|+|||++|.+|++.+..
T Consensus 217 iY~f~~~~~~~l-~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~ 291 (303)
T 3pnn_A 217 MWGFTPDYFDYS-EELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRE 291 (303)
T ss_dssp EEEECTHHHHHH-HHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHH
T ss_pred EEEECHHHHHHH-HHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHH
Confidence 999999998544 32 1111 2223467888888765 79999999999999999999999998764
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=244.02 Aligned_cols=230 Identities=12% Similarity=0.095 Sum_probs=168.9
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhh-cCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCce
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~-~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 89 (442)
+||||||.||||+|+|..+||+|+||+|+ |||+|+|++|.+ +|+++++|++++..+ +.+++.+... +++...
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gk-pli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~-----~~~~~~ 74 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQ-TLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKAT-----QLGIKQ 74 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTE-EHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHH-----HHTCSS
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCe-EHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHH-----HcCCCC
Confidence 79999999999999999999999999999 999999999999 799999999998765 5556544321 111111
Q ss_pred EEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeee-ecCHHHHHHHHHHcCCcEEEEEeecCC
Q 013483 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMDYMDFVQNHRQSGADITISCLPMDD 168 (442)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~-~~~l~~~l~~~~~~~~~~tl~~~~~~~ 168 (442)
+.+... +. +++||++|++.+...+.......+++|+|++||+++ +.++.++ .++++.++++.+.++
T Consensus 75 ~~~~~~-~~-------~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~~ 141 (255)
T 4evw_A 75 FYIAEL-HT-------ETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGGG 141 (255)
T ss_dssp EEEEEE-SS-------CCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECCS
T ss_pred ceEEEe-CC-------CCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecCC
Confidence 111111 21 147999999999999820000014789999999988 4555442 246678888888764
Q ss_pred CcCCcccEEEEcCCC--ceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHH-HHHHHHhhh----C
Q 013483 169 SRASDFGLMKINNEG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE-ILLNLLRWR----F 241 (442)
Q Consensus 169 ~~~~~~g~v~~d~~~--~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~-~l~~~l~~~----~ 241 (442)
+ .||++..|++| +|+++.||+.. ++++++|+|+|++. +|.+.+.+. .
T Consensus 142 --p-~yG~v~~d~~g~~~V~~i~EK~~~-----------------------s~~~~~GiY~f~~~~~~~~~l~~~i~~~~ 195 (255)
T 4evw_A 142 --D-NWSFAKPEHAGSTKVIQTAEKNPI-----------------------SDLCSTGLYHFNRKEDYLEAYREYVARPS 195 (255)
T ss_dssp --S-CSCEEEESSTTCCBEEEEESSSCS-----------------------SSEEEEEEEEESCHHHHHHHHHHHHTSCG
T ss_pred --C-ceeEEEECCCCCeEEEEEEeccCc-----------------------cCcEEEeEEEECcHHHHHHHHHHHHhccc
Confidence 3 89999998888 99999999432 36789999999985 343333321 1
Q ss_pred C---CCcccccchhhhcccc-cceEEEEec-ceeeecCChHHHHHHhhhh
Q 013483 242 P---TANDFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 242 ~---~~~~~~~~~l~~~i~~-~~i~~~~~~-g~~~di~t~~~~~~an~~~ 286 (442)
+ ....+..|+++.+++. .++.++.++ ++|.|+|||++|.++.+.-
T Consensus 196 ~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~~ 245 (255)
T 4evw_A 196 QEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQP 245 (255)
T ss_dssp GGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC-
T ss_pred ccccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhcC
Confidence 1 2233446888888864 579999885 9999999999999997654
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-30 Score=244.30 Aligned_cols=233 Identities=24% Similarity=0.414 Sum_probs=180.8
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEec-cChhhHHHHHHhhccCCCCcccC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~-~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
.|++||||||.||||+|+|..+||+|+|++|+ |||+|+++.|..+|+++|+|+++ +..+.+.+++.+ +.+++
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~------g~~~g 75 (295)
T 1lvw_A 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGD------GSQFG 75 (295)
T ss_dssp SCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT------SGGGT
T ss_pred ceEEEEECCCCCCccccccCCCCceecEECCe-eHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhh------ccccC
Confidence 48999999999999999999999999999999 99999999999999999999886 555677777643 22233
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCee-eecCHHHHHHHHHHcCCcEEEEEee
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i-~~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
.. +.+. .+.. +.|++++++.+.+++.+ ++++++.||.+ .+.++.++++.|.+.+..+++++.+
T Consensus 76 ~~-i~~~--~~~~-------~~G~~~al~~a~~~i~~------~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~ 139 (295)
T 1lvw_A 76 VR-FSYR--VQEE-------PRGIADAFIVGKDFIGD------SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYY 139 (295)
T ss_dssp SE-EEEE--ECSS-------CCCGGGHHHHTHHHHTT------SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEE
T ss_pred ce-EEEe--eCCC-------CCChHHHHHHHHHHhCC------CcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEE
Confidence 21 2222 2221 36999999999998863 68888889995 4667999999998777778887777
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-C
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A 244 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~ 244 (442)
..+ +..||++..|+++++.+|.|||..+. +++.++|+|+|+++++. .+++..+. .
T Consensus 140 v~d--p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~f~~~~l~-~~~~~~~~~~ 195 (295)
T 1lvw_A 140 VRD--PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVE-IARRIEPSDR 195 (295)
T ss_dssp CSC--CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHH-HHHHCCCCTT
T ss_pred CCC--cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEeEEEcHHHHH-HHHhcCCccc
Confidence 665 56899999998999999999986432 35789999999999885 44443332 1
Q ss_pred ccc-ccchhhhcccccceEEEEec-ce-eeecCChHHHHHHhhhhh
Q 013483 245 NDF-GSEIIPASANEQFLKAYLFN-DY-WEDIGTIRSFFEANLALT 287 (442)
Q Consensus 245 ~~~-~~~~l~~~i~~~~i~~~~~~-g~-~~di~t~~~~~~an~~~l 287 (442)
..+ ..++++.+++.+.+.++... ++ |.|++|++||.+|+..+.
T Consensus 196 ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (295)
T 1lvw_A 196 GELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp SCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence 112 25677777766677777665 74 999999999999998765
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=246.58 Aligned_cols=234 Identities=24% Similarity=0.393 Sum_probs=181.1
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEec-cChhhHHHHHHhhccCCCCcccC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~-~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
.|++||||||.||||+|+|..+||+|+|++|+ |||+|+++.|..+|+++|+|+++ +..+.+.+++.+ +.+++
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~------g~~~g 75 (296)
T 1mc3_A 3 HMKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGD------GSEFG 75 (296)
T ss_dssp CCEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT------SGGGT
T ss_pred ccEEEEECCCCCCcCCcccCCCCceeeEECCe-eHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhc------ccccC
Confidence 47999999999999999999999999999999 99999999999999999999986 555677777643 22233
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeee-ecCHHHHHHHHHHcCCcEEEEEee
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~-~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
.. +.+. .+.. +.|++++++.+.+++.+ ++++++.||.++ +.++.++++.|.+.+..++++..+
T Consensus 76 ~~-i~~~--~~~~-------~~G~~~al~~a~~~i~~------~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~ 139 (296)
T 1mc3_A 76 IQ-LEYA--EQPS-------PDGLAQAFIIGETFLNG------EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQ 139 (296)
T ss_dssp CE-EEEE--ECSS-------CCCSTHHHHHTHHHHTT------SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEE
T ss_pred ce-EEEe--ccCC-------CCCHHHHHHHHHHHhCC------CCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEE
Confidence 21 2222 2221 36999999999998863 688888899954 567999999997766778887777
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-C
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A 244 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~ 244 (442)
..+ +..||++..|+++++.+|.|||..+. +++.++|+|+|+++++. .++...+. .
T Consensus 140 v~d--p~~yg~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~-~~~~~~~~~~ 195 (296)
T 1mc3_A 140 VMD--PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVE-YAKQVKPSER 195 (296)
T ss_dssp CSC--CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHH-HHHSCCCCSS
T ss_pred CCC--cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEcHHHHH-HHHhcCcccc
Confidence 665 56899999888999999999986432 35789999999999985 44543332 1
Q ss_pred ccc-ccchhhhcccccceEEEEec-ce-eeecCChHHHHHHhhhhhc
Q 013483 245 NDF-GSEIIPASANEQFLKAYLFN-DY-WEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 245 ~~~-~~~~l~~~i~~~~i~~~~~~-g~-~~di~t~~~~~~an~~~l~ 288 (442)
..+ ..++++.+++.+.+.++... ++ |.|+||+++|.+|+..+..
T Consensus 196 ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 242 (296)
T 1mc3_A 196 GELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQT 242 (296)
T ss_dssp SSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHhcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHHH
Confidence 112 25677777766677777775 74 9999999999999987753
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-29 Score=239.07 Aligned_cols=241 Identities=18% Similarity=0.324 Sum_probs=152.5
Q ss_pred cceEEEEEeCCCCCCCccccc-CCCccceeec-CccceehhhhhhhhhcCCcEEEEEeccCh-hhHHHHHHhhccCCCCc
Q 013483 7 RTVAAVILGGGAGTRLYPLTK-QRAKPAVPIG-GAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGV 83 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~-~~pK~Llpi~-g~~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~ 83 (442)
++|+|||||||.||||+|+|. .+||+|+|++ |+ |||+|+++++.++ +++|+|++++.. +.+.+++.+.
T Consensus 3 ~~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~-pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~~~------- 73 (308)
T 2qh5_A 3 LKIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHK-SLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNE------- 73 (308)
T ss_dssp CCEEEEEECC-------------CCGGGCTTBTTB-CHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTTTT-------
T ss_pred CccEEEEEcCCCCccCCccCCCCCCCEEEECCCCC-CHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHHHh-------
Confidence 468999999999999999997 7999999995 88 9999999999999 999999999875 4666666431
Q ss_pred ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeee-ecC-HHHHHHH---HHHcCCc
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMD-YMDFVQN---HRQSGAD 158 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~-~~~-l~~~l~~---~~~~~~~ 158 (442)
++...+.++. +.. +.||+++++.+..++.. .+.|++++||+++ +.+ +.++++. |.++++.
T Consensus 74 -~~~~~~~~i~--~~~-------~~gt~~al~~a~~~l~~-----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (308)
T 2qh5_A 74 -IKNKSVGFLL--ESL-------SKNTANAIALSALMSDK-----EDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFL 138 (308)
T ss_dssp -CSSCEEEEEE--ESS-------CCCHHHHHHHHHHTSCT-----TSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCE
T ss_pred -hCCCccEEEe--CCC-------CCChHHHHHHHHHHhCC-----CCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCE
Confidence 1111122322 221 36999999999988742 2459999999977 566 8888887 6667778
Q ss_pred EEEEEeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHh
Q 013483 159 ITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (442)
Q Consensus 159 ~tl~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~ 238 (442)
+|+.+.+..+ +..||++..|++++|..|.|||........ + ...++++++|+|+|++++|.+.++
T Consensus 139 ~t~~~~~~~~--~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~-~------------~~g~~~~n~Giy~~~~~~ll~~l~ 203 (308)
T 2qh5_A 139 VTFGVSIDKP--NTEFGYIESPNGLDVKRFIEKPSLDKAIEF-Q------------KSGGFYFNSGMFVFQAGVFLDELK 203 (308)
T ss_dssp EEEEEECSSC--CTTSEEEECSSSSBCSEEEESCCHHHHHHH-H------------HHCCEEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEecCCC--CCCceEEEECCCCEEEEEEECCChHHHHHH-h------------hcCCeEEEeEEEEEEHHHHHHHHH
Confidence 8888877544 567999988777899999999875431100 0 001368899999999987645554
Q ss_pred hhCCC------------C------cccc---cchhh--------h-ccc-ccceEEEEecceeeecCChHHHHHHhhhh
Q 013483 239 WRFPT------------A------NDFG---SEIIP--------A-SAN-EQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 239 ~~~~~------------~------~~~~---~~~l~--------~-~i~-~~~i~~~~~~g~~~di~t~~~~~~an~~~ 286 (442)
+..+. . ..+. .++++ . +++ +.++++++++++|.|+|||++|.+++..-
T Consensus 204 ~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~ 282 (308)
T 2qh5_A 204 KHAPTILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANE 282 (308)
T ss_dssp HHCHHHHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC--------------
T ss_pred HhChHHHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcC
Confidence 33221 0 0111 23333 2 454 47899999999999999999999998764
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=231.35 Aligned_cols=233 Identities=21% Similarity=0.322 Sum_probs=167.5
Q ss_pred eEEEEEeCCCCCCCcccc-cCCCccceeecC-ccceehhhhhhhhhc-CCcEEEEEeccCh-hhHHHHHHhhccCCCCcc
Q 013483 9 VAAVILGGGAGTRLYPLT-KQRAKPAVPIGG-AYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt-~~~pK~Llpi~g-~~pli~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~ 84 (442)
|++||||||.||||+||| ..+||+|+|++| + |||+|+++++..+ |+++++|++++.+ ..+.+++.+. ...+
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~-pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~----~~~~ 76 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNK-SLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPEL----PDEN 76 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTB-CHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTS----CGGG
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECCCCC-cHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhcc----ccce
Confidence 789999999999999999 679999999999 8 9999999999996 8999999999874 3556555321 0111
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeec--CHH----HHHHHHHHcCCc
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM--DYM----DFVQNHRQSGAD 158 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~--~l~----~~l~~~~~~~~~ 158 (442)
+ +.. +. +.||++++..+...+.. .+.|++++||+++.. +|. ++++.|++.++.
T Consensus 77 -----i-i~e---~~-------~~gta~ai~~a~~~~~~-----~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~ 135 (336)
T 2x65_A 77 -----I-IAE---PM-------KKNTAPACFIGTKLADD-----DEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGL 135 (336)
T ss_dssp -----E-EEE---SS-------CCCHHHHHHHHHTTSCT-----TCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSE
T ss_pred -----E-EeC---CC-------CCCcHHHHHHHHHhhCC-----CCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCe
Confidence 1 111 11 36999999988765532 367999999997653 343 444556665677
Q ss_pred EEEEEeecCCCcCCcccEEEEcCC-----CceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 013483 159 ITISCLPMDDSRASDFGLMKINNE-----GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (442)
Q Consensus 159 ~tl~~~~~~~~~~~~~g~v~~d~~-----~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l 233 (442)
+|+.+.+... +..||++..+++ ++|..|.|||.....+.. .....+++++|+|+|++++|
T Consensus 136 vt~~i~p~~~--~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~-------------~~~g~y~~n~Giy~~~~~~l 200 (336)
T 2x65_A 136 FTFGIVPTRP--ETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKF-------------VESGRFLWNSGMFLWKAREF 200 (336)
T ss_dssp EEEEECCCSC--CSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHH-------------HHHTCEEEEEEEEEEEHHHH
T ss_pred EEEEeecccC--CCCceEEEECCccCCCccEEEEEEECCChHHHHHH-------------HhcCCeEEEeeeEEEEHHHH
Confidence 7887766543 468999987654 789999999986432100 00013688999999999987
Q ss_pred HHHHhhhCCCC----------c-ccccchhhh---------ccc-ccceEEEEecceeeecCChHHHHHH
Q 013483 234 LNLLRWRFPTA----------N-DFGSEIIPA---------SAN-EQFLKAYLFNDYWEDIGTIRSFFEA 282 (442)
Q Consensus 234 ~~~l~~~~~~~----------~-~~~~~~l~~---------~i~-~~~i~~~~~~g~~~di~t~~~~~~a 282 (442)
.+.+++..+.. . .|..+.++. +++ ..++++++++++|.|+||+++|.++
T Consensus 201 l~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 201 IEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp HHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 55554432210 0 222344554 344 4789999999999999999999999
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=220.42 Aligned_cols=221 Identities=16% Similarity=0.235 Sum_probs=159.5
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
++|++||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++++|++++..+++.+... .+ +
T Consensus 24 ~~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~-~~--------~ 93 (254)
T 1jyk_A 24 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKE-KY--------G 93 (254)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHH-HH--------C
T ss_pred cCceEEEECCCCcccCCcccCCCCCEEeeECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHH-hC--------C
Confidence 368999999999999999999999999999999 9999999999999999999999988777654432 22 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
+.++...+.. ..|++++++.++..++ ++++++||+++..++ ++.+.+++..+|+ ..
T Consensus 94 ---~~iv~~~~~~-------~~g~~~al~~a~~~~~--------~~lv~~~D~~~~~~~---~~~~~~~~~~~t~---~~ 149 (254)
T 1jyk_A 94 ---VRLVFNDKYA-------DYNNFYSLYLVKEELA--------NSYVIDADNYLFKNM---FRNDLTRSTYFSV---YR 149 (254)
T ss_dssp ---CEEEECTTTT-------TSCTHHHHHTTGGGCT--------TEEEEETTEEESSCC---CCSCCCSEEEEEC---EE
T ss_pred ---cEEEECCCcc-------CCCcHHHHHHHHHHCC--------CEEEEeCCcccCHHH---HHHHHhCCceEEE---Ec
Confidence 2333322211 2589999999887663 489999999776553 2222222222232 22
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHH---HHHHhhhCCC
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL---LNLLRWRFPT 243 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l---~~~l~~~~~~ 243 (442)
.++ ...|+++ .|++|+|+.+.|++. +.++++|+|+|+++.+ .+++++....
T Consensus 150 ~~~-~~~~~v~-~d~~g~v~~~~e~~~------------------------~~~~~~Giy~~~~~~~~~l~~~l~~~~~~ 203 (254)
T 1jyk_A 150 EDC-TNEWFLV-YGDDYKVQDIIVDSK------------------------AGRILSGVSFWDAPTAEKIVSFIDKAYVS 203 (254)
T ss_dssp SSC-SSCCEEE-ECTTCBEEEEECCCS------------------------SEEBCCSEEEECHHHHHHHHHHHHHHHTT
T ss_pred ccC-CCCeEEE-ECCCCeEEEEEECCC------------------------CCcEEEEEEEEcHHHHHHHHHHHHHHHhc
Confidence 221 2357754 778899999998642 1467999999998643 3344433222
Q ss_pred ---CcccccchhhhcccccceEEEEec-ceeeecCChHHHHHHhhhhh
Q 013483 244 ---ANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 244 ---~~~~~~~~l~~~i~~~~i~~~~~~-g~~~di~t~~~~~~an~~~l 287 (442)
...+.+++++.++++.++.++.++ ++|.+|+|++||.+|++.+.
T Consensus 204 ~~~~e~~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~ 251 (254)
T 1jyk_A 204 GEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILK 251 (254)
T ss_dssp TCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC
T ss_pred CCccccCHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHHHHHHHhh
Confidence 223345677777777889999887 79999999999999998875
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-27 Score=230.33 Aligned_cols=234 Identities=20% Similarity=0.298 Sum_probs=163.8
Q ss_pred ceEEEEEeCCCCCCCcccc-cCCCccceeecC-ccceehhhhhhhhhc-CCcEEEEEeccChh-hHHHHHHhhccCCCCc
Q 013483 8 TVAAVILGGGAGTRLYPLT-KQRAKPAVPIGG-AYRLIDVPMSNCINS-GINKVYILTQYNSA-SLNRHLARAYNYGSGV 83 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt-~~~pK~Llpi~g-~~pli~~~l~~l~~~-gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~ 83 (442)
+|.+||||||.||||+||| ..+||+|+|++| + |||+|+++++..+ ++++++|++++... .+.+++ ...
T Consensus 2 ~m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~-pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l------~~~- 73 (337)
T 2cu2_A 2 KTYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEAVARPYA------DGI- 73 (337)
T ss_dssp CEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGC------SSS-
T ss_pred CeEEEEEcCCCcccCCccCCCCCCceEEEcCCCC-hHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHh------ccC-
Confidence 4899999999999999999 579999999999 7 9999999999998 89999999987642 333222 110
Q ss_pred ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeec--CHHHHHH----HHHHcCC
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM--DYMDFVQ----NHRQSGA 157 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~--~l~~~l~----~~~~~~~ 157 (442)
.+ ++. + .+.||+.++..+.. +... ...+.|++++||+++.. .|.++++ .|++ ++
T Consensus 74 -----~~-i~e---~-------~~~gta~ai~~a~~-l~~~--~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~ 133 (337)
T 2cu2_A 74 -----RL-LLE---P-------LGRDTAGAVLLGVA-EALK--EGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GF 133 (337)
T ss_dssp -----EE-EEE---S-------SCCHHHHHHHHHHH-HHHH--HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TC
T ss_pred -----ce-Eec---C-------CCCCcHHHHHHHHH-Hhcc--CCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CC
Confidence 11 221 1 13689999988876 5210 01368999999997753 3544444 3443 56
Q ss_pred cEEEEEeecCCCcCCcccEEEEcCC----CceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 013483 158 DITISCLPMDDSRASDFGLMKINNE----GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (442)
Q Consensus 158 ~~tl~~~~~~~~~~~~~g~v~~d~~----~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l 233 (442)
.+|+.+.+..+ +..||++..+++ ++|..|.|||.....+. +....+++++|+|+|++++|
T Consensus 134 ~vt~~i~p~~~--~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~--------------~~~~g~~~n~Giy~f~~~~l 197 (337)
T 2cu2_A 134 VVALGLRPTRP--ETEYGYIRLGPREGAWYRGEGFVEKPSYAEALE--------------YIRKGYVWNGGVFAFAPATM 197 (337)
T ss_dssp EEEEEECCSSC--CSSSCEEEEEEEETTEEEEEEEECCCCHHHHHH--------------HHHTTCEEEEEEEEECHHHH
T ss_pred eEEEeeccCCC--CCCceEEEECCcccccCeEEEEEeCCChHHHHH--------------HhhcCCEEEEEEEEEeHHHH
Confidence 77777776543 568999988765 79999999998543210 11111689999999999987
Q ss_pred HHHHhhhCCCC-ccc--------ccchhhh---------ccc-ccceEEEEecceeeecCChHHHHHHhhh
Q 013483 234 LNLLRWRFPTA-NDF--------GSEIIPA---------SAN-EQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (442)
Q Consensus 234 ~~~l~~~~~~~-~~~--------~~~~l~~---------~i~-~~~i~~~~~~g~~~di~t~~~~~~an~~ 285 (442)
.+.+++..+.. ..+ ..+.++. +++ ..++++++++++|.|+|||++|.++...
T Consensus 198 l~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~~~ 268 (337)
T 2cu2_A 198 AELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVFSQ 268 (337)
T ss_dssp HHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHHTS
T ss_pred HHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHhhc
Confidence 55555433221 001 0123333 343 4689999999999999999999999654
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-26 Score=210.30 Aligned_cols=239 Identities=18% Similarity=0.234 Sum_probs=169.3
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (442)
++.|||||||.|||| | ||+|+|++|+ |||+|+++.+.++|+++|+|+++ .+.+.+++.+ ++
T Consensus 2 ~~~aiIlA~G~stRl-p-----~K~L~~i~Gk-Pli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~---~g------- 62 (252)
T 3oam_A 2 SFTVVIPARYQSTRL-P-----GKPLADIGGK-PMIQWVYEQAMQAGADRVIIATD--DERVEQAVQA---FG------- 62 (252)
T ss_dssp CEEEEEECCCCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH---TT-------
T ss_pred ceEEEEecCcCCCCC-C-----CcceeeECCE-EHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHHH---cC-------
Confidence 689999999999999 3 8999999999 99999999999999999999985 4677777753 11
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-ee-ecCHHHHHHHHHHcCCcEEEEEee
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
++++...+.. +.||++ +..+...+.. ...+.|++++||. ++ ...+.++++.|.++++++++++.+
T Consensus 63 --~~v~~~~~~~-------~~Gt~~-~~~~~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~ 129 (252)
T 3oam_A 63 --GVVCMTSPNH-------QSGTER-LAEVVAKMAI---PADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVE 129 (252)
T ss_dssp --CEEEECCTTC-------CSHHHH-HHHHHHHTTC---CTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEE
T ss_pred --CEEEEcCCCC-------CCcHHH-HHHHHHhcCc---CCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeee
Confidence 2233222221 368888 4555555520 0147899999999 44 456899999998888889999888
Q ss_pred cCCCcCCcc-----cEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh
Q 013483 166 MDDSRASDF-----GLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (442)
Q Consensus 166 ~~~~~~~~~-----g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~ 240 (442)
.++ +.+| |.+..|++|++..|.++|-........ ..+. ....+++.++|+|+|++++|..+...
T Consensus 130 v~~--~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~-------~~~~-~~~~~~~~n~GiY~~~~~~l~~~~~~- 198 (252)
T 3oam_A 130 IED--EAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFA-------KADK-AIVQPLLRHIGIYAYRAGFINTYLDW- 198 (252)
T ss_dssp ECC--HHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHH-------SSSC-CCCSCEEEEEEEEEEETTHHHHHHHS-
T ss_pred cCC--HHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCccc-------cccc-cccccceEEEEEEEcCHHHHHHHHcC-
Confidence 775 4556 889999999999999987543210000 0000 00135788999999999999766543
Q ss_pred CCCCccccc--chhhhcccccceEEEEec-ceeeecCChHHHHHHhhhhhcC
Q 013483 241 FPTANDFGS--EIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTAH 289 (442)
Q Consensus 241 ~~~~~~~~~--~~l~~~i~~~~i~~~~~~-g~~~di~t~~~~~~an~~~l~~ 289 (442)
.+......+ +.+..+-.+.++.++..+ ..|.+||||+||.+|++.+..+
T Consensus 199 ~~~~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 199 QPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp CCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CCCcccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 222111111 223333346789998664 5789999999999999987643
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=193.86 Aligned_cols=236 Identities=16% Similarity=0.160 Sum_probs=158.4
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
+++.+||||+|.||||. ||+|+|++|+ |||+|+++.+.++|+++|+|+++ .+.+.+++.+ ++
T Consensus 8 M~~~aIIlA~G~stRl~------~K~L~~i~Gk-Pli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~~---~g------ 69 (256)
T 3tqd_A 8 MEFRVIIPARFDSTRLP------GKALVDIAGK-PMIQHVYESAIKSGAEEVVIATD--DKRIRQVAED---FG------ 69 (256)
T ss_dssp -CCEEEEECCCC---CT------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH---TT------
T ss_pred CCceEEEEcCCCCCCCC------CCCeeeECCc-hHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH---cC------
Confidence 57899999999999995 8999999999 99999999999999999999985 4667766653 12
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHc-CCcEEEEE
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQS-GADITISC 163 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~-~~~~tl~~ 163 (442)
++++...+. .+.|+++ +..+...+.. ...+.|+++.||. ++. ..+.++++.|++. +.+++.++
T Consensus 70 ---~~v~~~~~~-------~~~Gt~~-i~~a~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~ 135 (256)
T 3tqd_A 70 ---AVVCMTSSD-------HQSGTER-IAEAAVALGF---EDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLC 135 (256)
T ss_dssp ---CEEEECCTT-------CCSHHHH-HHHHHHHTTC---CTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEE
T ss_pred ---CeEEEeCCC-------CCCcHHH-HHHHHHHhCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEe
Confidence 223322222 1357776 6777777631 1147999999999 444 4588999998775 45667677
Q ss_pred eecCCC----cCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 013483 164 LPMDDS----RASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (442)
Q Consensus 164 ~~~~~~----~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~ 239 (442)
.+..+. ++..+ .+..|++|++..|.++|.+....... ..+......+++.++|+|.|++++|..+. +
T Consensus 136 ~~v~~~~~~~~p~~v-kvv~d~~g~~l~fsr~pip~~r~~~~-------~~~~~~~~~~~~~~~GiY~y~~~~l~~~~-~ 206 (256)
T 3tqd_A 136 TPITEVDELFNPHST-KVVLNRRNYALYFSHAPIPWGRDTFS-------DKENLQLNGSHYRHVGIYAYRVGFLEEYL-S 206 (256)
T ss_dssp EECCCHHHHTCTTSC-EEEECTTSBEEEEESSCSSCCTTTTT-------CGGGCCCSSCCEEEEEEEEEEHHHHHHHH-H
T ss_pred eEcCCHHHhhCCCcc-EEEECCCCEEeEEecCCCCCCCcccc-------cccccccCCcceEEEEEEEcCHHHHHHHH-h
Confidence 665431 22333 35678899999999998743210000 00000011257889999999999997553 3
Q ss_pred hCCCCcccc--c--chhhhcccccceEEEEecce-eeecCChHHHHHHhhh
Q 013483 240 RFPTANDFG--S--EIIPASANEQFLKAYLFNDY-WEDIGTIRSFFEANLA 285 (442)
Q Consensus 240 ~~~~~~~~~--~--~~l~~~i~~~~i~~~~~~g~-~~di~t~~~~~~an~~ 285 (442)
..+. .++ + +.+..+-.+.++.++..+++ |.+||||+||.+|++.
T Consensus 207 l~~s--~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~ 255 (256)
T 3tqd_A 207 WDAC--PAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAY 255 (256)
T ss_dssp SCCC--HHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTT
T ss_pred CCCC--cccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHh
Confidence 2222 121 1 23444556789999999875 8999999999999864
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=193.91 Aligned_cols=238 Identities=16% Similarity=0.206 Sum_probs=162.9
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
.+++.|||||||.||||. +|+|+|++|+ |||+|+++++.++++++|+|+++ .+.+.+++.+ + +
T Consensus 16 ~M~~~aIIlA~G~stRlp------~K~L~~i~Gk-Pmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~~-~--g----- 78 (264)
T 3k8d_A 16 HMSFVVIIPARYASTRLP------GKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVEA-A--G----- 78 (264)
T ss_dssp --CCEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH-T--T-----
T ss_pred CCceEEEEEcCCCCCCCC------CcceeeECCe-EHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH-c--C-----
Confidence 456899999999999992 5999999999 99999999999999999999884 4667666643 1 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-ee-ecCHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
++++...+. ++.|++. +..+...+.. ...+.|+++.||. ++ ...+.++++.+++.++++++++
T Consensus 79 ----~~v~~~~~~-------~~~Gt~~-i~~~~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~ 143 (264)
T 3k8d_A 79 ----GEVCMTRAD-------HQSGTER-LAEVVEKCAF---SDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLA 143 (264)
T ss_dssp ----CEEEECCTT-------CCSHHHH-HHHHHHHHTC---CTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEE
T ss_pred ----CEEEEecCC-------CCCCHHH-HHHHHHHhcc---CCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEE
Confidence 223222222 1357776 7777776631 1147999999999 44 4558999999988788889888
Q ss_pred eecCCCc-CCccc--EEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh
Q 013483 164 LPMDDSR-ASDFG--LMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (442)
Q Consensus 164 ~~~~~~~-~~~~g--~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~ 240 (442)
.+.+++. ..+.+ .+..|++|++..|.++|.......... ...+ ...+++.++|+|+|++++|..+...
T Consensus 144 ~~v~d~~~~~~p~~vkVv~d~~g~~l~fsr~~ip~~r~~~~~-------~~~~-~~~~~~~~~GiY~y~~~~l~~~~~~- 214 (264)
T 3k8d_A 144 VPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAE-------GLET-VGDNFLRHLGIYGYRAGFIRRYVNW- 214 (264)
T ss_dssp EECCSHHHHTCTTSCEEEECTTSBEEEEESSCCSCCHHHHHH-------CSSC-CCSCCEEECSEEEEEHHHHHHHHHS-
T ss_pred EEcCCHHHccCCCceEEEECCCCeEEEEecCCCCCCCccccc-------cccc-cCCcceEEEEEEEECHHHHHHHHhC-
Confidence 8876521 11111 356788999999999986421100000 0000 1124688999999999999766442
Q ss_pred CCCCcccc--c--chhhhcccccceEEEEec-ceeeecCChHHHHHHhhhh
Q 013483 241 FPTANDFG--S--EIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 241 ~~~~~~~~--~--~~l~~~i~~~~i~~~~~~-g~~~di~t~~~~~~an~~~ 286 (442)
.+. .++ + +.+..+-.+.+++++... ..|.+|+||+||.+|++.+
T Consensus 215 ~~~--~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l 263 (264)
T 3k8d_A 215 QPS--PLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 263 (264)
T ss_dssp CCC--HHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC
T ss_pred CCC--hhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHh
Confidence 121 121 1 233444457789998654 5689999999999998753
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.8e-22 Score=182.65 Aligned_cols=225 Identities=17% Similarity=0.207 Sum_probs=152.5
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (442)
++.|||||||.|+||+ ||+|+|++|+ |||+|+++++.++ +++|+|++++ +++.+++.+ +
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~i~g~-pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~~---------~-- 60 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK------EKPLKNLLGK-PLIRWVVEGLVKT-GERVILATDS--ERVKEVVED---------L-- 60 (234)
T ss_dssp CEEEEEECCSCCTTTT------TGGGCEETTE-EHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHTT---------T--
T ss_pred ceEEEEEcCCCCCCCC------CCcceeECCE-EHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHHh---------c--
Confidence 5889999999999997 9999999999 9999999999999 9999999975 566666532 1
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHcCCcEEEEEee
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
+.++...+. ...|+++++. +...+. .+.|++++||+ +++ ..+.++++.|.+.+..+++....
T Consensus 61 --~~~~~~~~~-------~~~g~~~~~~-~~~~~~------~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~ 124 (234)
T 2y6p_A 61 --CEVFLTPSD-------LPSGSDRVLY-VVRDLD------VDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKD 124 (234)
T ss_dssp --SEEEECCTT-------CCSHHHHHHH-HHTTCC------CSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred --eEEEECCcc-------cccchHHHHH-HHHhCC------CCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCC
Confidence 112211111 1247777663 444443 47899999999 776 56899999998776445555442
Q ss_pred cCC-CcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 013483 166 MDD-SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (442)
Q Consensus 166 ~~~-~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~ 244 (442)
... .++..++ +..+++|++..+.+|+..... + + . ..+.+.++|+|+|++++|..+.+. .+..
T Consensus 125 ~~~~~~~~~~~-~~~~~~g~v~~~~e~~~~~~~-~------------~-~-~~~~~~~~giy~~~~~~l~~~~~~-~~~~ 187 (234)
T 2y6p_A 125 KEAYERPEDVK-VVLDREGYALYFSRSPIPYFR-K------------N-D-TFYPLKHVGIYGFRKETLMEFGAM-PPSK 187 (234)
T ss_dssp SGGGGCTTSCE-EEECTTSBEEEEESSCCSCCS-S------------C-C-SSCCEEEEEEEEEEHHHHHHHHHS-CCCH
T ss_pred HHHhcCCCceE-EEEcCCCCEeeeecCCCCccc-c------------c-c-cceeeEEEEEEEcCHHHHHHHHhC-CCCc
Confidence 111 1123333 345778999999988753110 0 0 0 012467999999999988765532 1111
Q ss_pred cccccc--hhhhcccccceEEEEecceeeecCChHHHHHHhhhh
Q 013483 245 NDFGSE--IIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 245 ~~~~~~--~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~ 286 (442)
....+. .+..+.++.++.++..+++|.||+||+||..|++.+
T Consensus 188 ~~~~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~ 231 (234)
T 2y6p_A 188 LEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKL 231 (234)
T ss_dssp HHHHHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHC
T ss_pred cchhhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHH
Confidence 111111 122233467899999999999999999999998765
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=186.30 Aligned_cols=214 Identities=18% Similarity=0.233 Sum_probs=134.7
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|++|.+||||||.|+||+|+ ||+|+|++|+ |||+|+++.+.++ +++++|++ +..+++.+++.+.+ +.
T Consensus 16 m~~~~~iIlA~G~g~R~~~~----~K~l~~i~g~-pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~~~--~~---- 82 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV----PKPLVRVGGC-EIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLKDK--GF---- 82 (232)
T ss_dssp CCCEEEEEEECC------CC----CGGGCEETTE-EHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHTTS--CC----
T ss_pred cccceEEEECCcCcCcCCCC----CcEEeEECCE-EHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHHhc--CC----
Confidence 55799999999999999976 9999999999 9999999999999 99999999 77777777753322 11
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCH-HHHHHHHHHcCCcEEEEEe
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY-MDFVQNHRQSGADITISCL 164 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l-~~~l~~~~~~~~~~tl~~~ 164 (442)
.+.++..... ..|++++++.+...+. +++++++||+.++.++ .++++. . . +++..
T Consensus 83 ---~~~~v~~~~~--------~~g~~~~i~~a~~~~~-------~~~lv~~~D~p~~~~~~~~l~~~----~-~-~~~~~ 138 (232)
T 2xme_A 83 ---NYKIVRHDRP--------EKGNGYSLLVAKNHVE-------DRFILTMGDHVYSQQFIEKAVRG----E-G-VIADR 138 (232)
T ss_dssp ---CEEEEECSCG--------GGCHHHHHHTTGGGCC-------SSEEEEETTEEECHHHHHHHTTC----C-E-EEEES
T ss_pred ---cEEEEECCCC--------CCCcHHHHHHHHHHCC-------CCEEEEcCCcccCHHHHHHHHhC----C-C-cEEEc
Confidence 1334332211 1589999999987774 5799999999775443 344332 1 1 22221
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~ 244 (442)
.....+..+++.+..+ ++++..+.+++.. ++..++|+|++++++|. .+++.....
T Consensus 139 ~~~~~~~~~~~~v~~~-~g~v~~~~~~~~~-----------------------~~~~~~g~~~~~~~~~~-~l~~~~~~g 193 (232)
T 2xme_A 139 EPRFVDIGEATKIRVE-DGRVAKIGKDLRE-----------------------FDCVDTGFFVLDDSIFE-HAEKLRDRE 193 (232)
T ss_dssp SCSSSCTTTSCEEEEE-TTEEEEEETTCSS-----------------------CSEEEEEEEEECTTHHH-HHGGGTTSS
T ss_pred cccccCCCcceEEEEc-CCEEEEeecCCCC-----------------------cceEEEEEEEECHHHHH-HHHHHHhcC
Confidence 1111123466666665 6889998876642 24568999999999886 445432111
Q ss_pred cccccchhhhcccccceEEEEec-ceeeecCChHHHHHHhhh
Q 013483 245 NDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLA 285 (442)
Q Consensus 245 ~~~~~~~l~~~i~~~~i~~~~~~-g~~~di~t~~~~~~an~~ 285 (442)
+..+..+++...+..+.++ ++|.+++||+||.++++.
T Consensus 194 ----~~~l~~ll~~~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 231 (232)
T 2xme_A 194 ----EIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRANRA 231 (232)
T ss_dssp ----CCCHHHHHHHHTCBEEECCSCCEEEEECC---------
T ss_pred ----hhHHHHHHHcCCEEEEEECCCCEEeCCCHHHHHHHHhh
Confidence 1123444544457777765 689999999999988764
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=182.29 Aligned_cols=228 Identities=17% Similarity=0.275 Sum_probs=154.7
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCC-cEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGI-NKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi-~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
++.|||||||.|+|| | ||+|+|++|+ |||+|+++.+.++++ ++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~aiIlA~G~~~R~-~-----~K~l~~i~g~-pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~-~--~------ 63 (245)
T 1h7e_A 2 KAVIVIPARYGSSRL-P-----GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQA-F--G------ 63 (245)
T ss_dssp CEEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHH-T--T------
T ss_pred CeEEEEEcCCcCCCC-C-----CCcccccCCc-hHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHH-c--C------
Confidence 589999999999999 5 9999999999 999999999999996 999999975 566666643 1 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHc-CCcEEEEE
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQS-GADITISC 163 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~-~~~~tl~~ 163 (442)
++++...+. +..|+++++. +...+. .+.|++++||+ +.. ..+.++++.|++. ++++++.+
T Consensus 64 ---~~~~~~~~~-------~~~g~~~~~~-~~~~~~------~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~ 126 (245)
T 1h7e_A 64 ---GKAIMTRND-------HESGTDRLVE-VMHKVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLC 126 (245)
T ss_dssp ---CEEEECCSC-------CSSHHHHHHH-HHHHSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred ---CeEEeCCCc-------cCCcHHHHHH-HHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEe
Confidence 223322121 1247766554 344443 47899999999 333 4588999999887 67777777
Q ss_pred eecCCCcCCccc--EEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 013483 164 LPMDDSRASDFG--LMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (442)
Q Consensus 164 ~~~~~~~~~~~g--~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~ 241 (442)
.+.......+++ .+..+++|++..|.+++..... +.. ..+.+.++|+|+|+++.|..++ + .
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r--------------~~~-~~~~~~~~g~y~~~~~~l~~~~-~-~ 189 (245)
T 1h7e_A 127 HAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPR--------------NAE-KARYLKHVGIYAYRRDVLQNYS-Q-L 189 (245)
T ss_dssp EEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCT--------------TGG-GCCEEEEEEEEEEEHHHHHHGG-G-S
T ss_pred ecCCHHHhcCCCCcEEEECCCCcEEEeecCCCCCCc--------------ccc-cCceeEEEEEEEcCHHHHHHHH-h-C
Confidence 665211001222 2333678899988876533110 000 0124679999999999886654 2 1
Q ss_pred CCCcccccchhhhc---ccccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 242 PTANDFGSEIIPAS---ANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 242 ~~~~~~~~~~l~~~---i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
........+.++.+ ..+.++.++..++.|.||+||+||..|+..+.
T Consensus 190 ~~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~ 238 (245)
T 1h7e_A 190 PESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMA 238 (245)
T ss_dssp CCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHH
T ss_pred CCCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 21111113444443 23678999999999999999999999988764
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-21 Score=177.21 Aligned_cols=236 Identities=15% Similarity=0.154 Sum_probs=158.9
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhh-hhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-SNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l-~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (442)
..|||||+|.||||. +|+|+|++|+ |||+|++ +.+.++++++|+|+++ .+.+.+++.+ ++
T Consensus 2 ~~aiIlA~G~stR~~------~K~L~~i~Gk-Pli~~~i~~~~~~~~~~~vvVvt~--~~~i~~~~~~---~g------- 62 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP------GKPLLLIHDR-PMILRVVDQAKKVEGFDDLCVATD--DERIAEICRA---EG------- 62 (253)
T ss_dssp EEEEEECCSCCTTST------TGGGSEETTE-EHHHHHHHHHHTCTTCCEEEEEES--CHHHHHHHHT---TT-------
T ss_pred eEEEEEeCCCCCCCC------CCceeeECCe-EhHHHHHHHHHHhcCCCEEEEECC--HHHHHHHHHH---cC-------
Confidence 469999999999996 5999999999 9999999 9999999999999996 3566666543 11
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHcC-Cc-EEEEE
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSG-AD-ITISC 163 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~-~~-~tl~~ 163 (442)
++++...+.. +.|+ +++..+...+.. ...+.|+++.||. ++. ..+.++++.|++.+ .. +|+++
T Consensus 63 --~~v~~~~~~~-------~~Gt-~~i~~a~~~~~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~ 129 (253)
T 4fcu_A 63 --VDVVLTSADH-------PSGT-DRLSEVARIKGW---DADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCE 129 (253)
T ss_dssp --CCEEECCTTC-------CCHH-HHHHHHHHHHTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEE
T ss_pred --CeEEEeCCCC-------CChH-HHHHHHHHhcCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeE
Confidence 1122111211 2466 467777777741 1147899999999 554 45889999988763 33 44444
Q ss_pred eecCC----CcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 013483 164 LPMDD----SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (442)
Q Consensus 164 ~~~~~----~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~ 239 (442)
+..+ .++..+ .+..|++|++..|.++|.......... .++.....++.++|+|+|++++|..+...
T Consensus 130 -~~~~~~~~~~p~~~-kvv~d~~g~~l~fsr~~ip~~r~~~~~--------~~~~~~~~~~~~~GiY~f~~~~l~~~~~~ 199 (253)
T 4fcu_A 130 -PIHALDEFQRDSIV-KVVMSKQNEALYFSRATIPYDRDGAKR--------DEPTLHTQAFRHLGLYAYRVSLLQEYVTW 199 (253)
T ss_dssp -ECCCHHHHHCTTSC-EEEECTTSBEEEEESSCCSCCTTTSSS--------SSCCCCSCCEEEEEEEEEEHHHHHHHTTS
T ss_pred -EcCCHHHccCCCcc-EEEECCCCeEEEecCCCCCCCCCcccc--------cccccccceeEEEEEEEeCHHHHHHHHhC
Confidence 3221 224444 456788999999999876432100000 00000124678999999999999766421
Q ss_pred hCCCCcccc-cchh---hhcccccceEEEEecce-eeecCChHHHHHHhhhhhcC
Q 013483 240 RFPTANDFG-SEII---PASANEQFLKAYLFNDY-WEDIGTIRSFFEANLALTAH 289 (442)
Q Consensus 240 ~~~~~~~~~-~~~l---~~~i~~~~i~~~~~~g~-~~di~t~~~~~~an~~~l~~ 289 (442)
+. ..++ .+.+ ..+-.+.+++++..+++ |.+||||+||.+|++.+..+
T Consensus 200 --~~-~~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 200 --EM-GKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp --CC-CHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred --CC-CcccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 21 1221 1223 33345789999999999 99999999999999877543
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=176.78 Aligned_cols=244 Identities=18% Similarity=0.233 Sum_probs=157.4
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (442)
++.|||||||.|+||. +|+|+|++|+ |||+|+++.+.++++++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~~~gk-pli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~-~--~------- 62 (262)
T 1vic_A 2 SFTVIIPARFASSRLP------GKPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVAKS-F--G------- 62 (262)
T ss_dssp CCEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH-T--T-------
T ss_pred CcEEEEEcCCCCCCCC------CCccccCCCe-EHHHHHHHHHHhCCCceEEEECCc--HHHHHHHHh-c--C-------
Confidence 5889999999999995 4999999999 999999999999999999999874 456666543 1 1
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHcCCcEEEEEee
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
++++...+. .+.|++ .+..+...+.. ...+.|++++||. ++. ..+.++++.|.+.++++++++.+
T Consensus 63 --~~~~~~~~~-------~~~g~~-~~~~~~~~l~~---~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~ 129 (262)
T 1vic_A 63 --AEVCMTSVN-------HNSGTE-RLAEVVEKLAI---PDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVK 129 (262)
T ss_dssp --CEEEECCCS-------SCCHHH-HHHHHHHHTTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred --CEEEECCcc-------ccCChH-HHHHHHHHhcc---CCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 222221111 124665 45555555531 1147899999999 443 55889999998887788887777
Q ss_pred cCCCc---CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 013483 166 MDDSR---ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (442)
Q Consensus 166 ~~~~~---~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~ 242 (442)
..+.. ...+..+..+++|++..|.+++..........+ ....+.+ ....++.++|+|+|+++++..+... .+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~~~~~---~~~~~~~-~p~~~~~~~giy~~~~~~l~~~~~~-~~ 204 (262)
T 1vic_A 130 IHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNL---QDVQKVQ-LSDAYLRHIGIYAYRAGFIKQYVQW-AP 204 (262)
T ss_dssp CCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTC---SCGGGCC-CCTTCEEEEEEEEEEHHHHHHHHHS-CC
T ss_pred cCCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCcccccc---ccccccc-cccceEEEEEEEEeeHHHHHHHHhC-CC
Confidence 65420 123445555778899988876532100000000 0000000 0112578999999999988654322 11
Q ss_pred CCcccccchhh--hcc-cccceEEEEec-ceeeecCChHHHHHHhhhhhcC
Q 013483 243 TANDFGSEIIP--ASA-NEQFLKAYLFN-DYWEDIGTIRSFFEANLALTAH 289 (442)
Q Consensus 243 ~~~~~~~~~l~--~~i-~~~~i~~~~~~-g~~~di~t~~~~~~an~~~l~~ 289 (442)
...+. .+++. .++ .+.++.++..+ ++|.||+||+||..|+..+...
T Consensus 205 ~~~~~-~e~~~~~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~~ 254 (262)
T 1vic_A 205 TQLEN-LEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAAN 254 (262)
T ss_dssp CHHHH-HHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred Cchhh-hhhHHHHHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 11010 11122 133 46789999998 7999999999999999887654
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-22 Score=195.33 Aligned_cols=257 Identities=14% Similarity=0.132 Sum_probs=142.3
Q ss_pred CeEEEEcCCeeeec--CHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcC--CCceEEEEeCCCcccccccccccc
Q 013483 130 EDVLILSGDHLYRM--DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN--EGRVLSFSEKPKGKDLKAMAVDTT 205 (442)
Q Consensus 130 ~~~lv~~gD~i~~~--~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~--~~~v~~i~ek~~~~~~~~~~~~~~ 205 (442)
+.=|+-.+|+++.. +|.+++++|. +|+.. .+++..+|+...++ ++++ .|.|||.....
T Consensus 11 ~~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g----~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~-------- 72 (374)
T 2iu8_A 11 SSGLVPRGSHMSQSTYSLEQLADFLK-----VEFQG----NGATLLSGVEEIEEAKTAHI-TFLDNEKYAKH-------- 72 (374)
T ss_dssp ----------CCSCCEEHHHHHHHTT-----CEEES----CTTCEECEECCTTTCCTTEE-EECCSSSTHHH--------
T ss_pred ccCcccCccccccCcCcHHHHHHhhC-----CEEEC----CCcceEEEEeccccCCCCeE-EEEeCchhhhh--------
Confidence 45577789999987 7999999885 35554 23366788877764 4566 99999985421
Q ss_pred cccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCcccccchhhhcccccceEEEEecceeeec--CChHHHHHHh
Q 013483 206 VLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDI--GTIRSFFEAN 283 (442)
Q Consensus 206 ~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l~~~i~~~~i~~~~~~g~~~di--~t~~~~~~an 283 (442)
..+.++|+|+|+++++.++. .+ .+.++ ++.+.+.++|....+|++. .++
T Consensus 73 ------------~~~~~aGiyI~~~~~l~~~~--------~~-~~~~p-l~~~~~~~a~~~~~~~~~~~i~~~------- 123 (374)
T 2iu8_A 73 ------------LKSSEAGAIIISRTQFQKYR--------DL-NKNFL-ITSESPSLVFQKCLELFITPVDSG------- 123 (374)
T ss_dssp ------------HHTCCCSEEEEEHHHHHTST--------TS-CSCEE-EESSCHHHHHHHHHTTTSCCCCCS-------
T ss_pred ------------hhcCCcEEEEeChhHhhhcc--------cc-ccceE-EEeCCHHHHHHHHHHHhccccccc-------
Confidence 14568999999998774221 12 45666 5554444444444455553 111
Q ss_pred hhhhcCCCCccccCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEEC
Q 013483 284 LALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLG 359 (442)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~ 359 (442)
...+++.+.+.+++.+++++.| +++.|. ++.||++|.|+ .+.| .+++||++|.|++++.|...+.+|
T Consensus 124 ---------~~~i~~~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG 194 (374)
T 2iu8_A 124 ---------FPGIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIG 194 (374)
T ss_dssp ---------CCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEEC
T ss_pred ---------cCccCCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceEC
Confidence 1122333333334444443333 222232 34455555554 3444 345555555555555554444444
Q ss_pred Cccccchhhhhhhh--------------cCCCcceEeCCCcEe----------------------e-eeEeCCCcEECCC
Q 013483 360 ADFYETDAEVASLL--------------AEGRVPVGIGENTKI----------------------K-ECIIDKNARIGKN 402 (442)
Q Consensus 360 ~~~~~~~~~~~~~~--------------~~~~~~~~i~~~~~i----------------------~-~~~ig~~~~ig~~ 402 (442)
+++.+.+....... -+...++.||++|.| . .++|+++|+||++
T Consensus 195 ~~~~I~~~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I~~~~~~~t~ig~~~~i~~~v~I~~~v~IG~~ 274 (374)
T 2iu8_A 195 KRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQH 274 (374)
T ss_dssp TTCEECTTCEEEEECSCEEEETTTEEEECCCCCCEEECTTCEECTTCEEEECSSSCEEECTTCEECTTCEECTTCEECTT
T ss_pred CCCEECCCCEECcCCcccccccCCceeEeeeeccEEECCCCEECCCcEEccCcccceeECCCcEECCccccCCccEECCC
Confidence 43333221100000 000001333333333 2 2556788999999
Q ss_pred eEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 403 VIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+++.+...+.+.++||++++||.++.| ||++++|+++|+|
T Consensus 275 ~~i~~~~~v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V 319 (374)
T 2iu8_A 275 SMIVAQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGV 319 (374)
T ss_dssp CEECTTCEECTTCEECSSCEECTTCEECSSCEECTTEEECTTCEE
T ss_pred CEEccCcccCCCcEECCCeEEecCcEECCCcccCCCcEEccCcee
Confidence 999999999999999999999999877 9999999999875
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-20 Score=170.60 Aligned_cols=230 Identities=13% Similarity=0.104 Sum_probs=147.0
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhh-HHHHHHhhccCCCCc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSAS-LNRHLARAYNYGSGV 83 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~-i~~~~~~~~~~~~~~ 83 (442)
|+++.+||||||.|+||++ ..+||+|+|++|+ |||+|+++.+.+++ +++|+|++++.... +.+.+.. +.+ +.
T Consensus 1 M~~~~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gk-pll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~-~~~-~~- 74 (246)
T 3f1c_A 1 MSLIYAQILAGGKGTRMGN--VSMPKQFLPLNGK-PIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKK-YIS-DD- 74 (246)
T ss_dssp -CCEEEEEECC-----C-C--SSCCGGGSEETTE-EHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHH-HCC-CT-
T ss_pred CCccEEEEECCccccccCC--CCCCCeEEEECCe-eHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHH-hCC-CC-
Confidence 3468999999999999985 4689999999999 99999999999997 99999999876543 3333333 211 11
Q ss_pred ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCC-CccCeEEEEcCCe-eee-cCHHHHHHHHHHcCCcEE
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRN-KVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADIT 160 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~-~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~~~~t 160 (442)
.+.++.. + .+..++++.++..+..... ...+.+++++||. ++. ..+.++++.+.+.++.+
T Consensus 75 -----~~~~~~~-~----------~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i- 137 (246)
T 3f1c_A 75 -----RIVVIEG-G----------EDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVD- 137 (246)
T ss_dssp -----TEEEEEC-C----------SSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEE-
T ss_pred -----CEEEECC-C----------CchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEE-
Confidence 1333321 1 3677889888887752000 0137899999999 444 44889999998876543
Q ss_pred EEEeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh
Q 013483 161 ISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (442)
Q Consensus 161 l~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~ 240 (442)
.+.+..+ .++..++++.+..+.+|+.. +..-..++|+.+.|.++++..
T Consensus 138 -~~~~~~d------~i~~~~~~~~v~~~~~r~~l-------------------------~~~qtpq~f~~~~L~~a~~~~ 185 (246)
T 3f1c_A 138 -TVIEALD------TIVESSNHEVITDIPVRDHM-------------------------YQGQTPQSFNMKKVFNHYQNL 185 (246)
T ss_dssp -EEEECSS------CEEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTS
T ss_pred -EEEeccc------eEEEecCCCeEEEecChHHh-------------------------hhhcCCceeEHHHHHHHHHHH
Confidence 3444332 23333444555554443321 123356799998887777653
Q ss_pred CCCCcccccchhhhccc-ccceEEEEecceeeecCChHHHHHHhhhhhcCC
Q 013483 241 FPTANDFGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (442)
Q Consensus 241 ~~~~~~~~~~~l~~~i~-~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~ 290 (442)
.........|....+.. +.++..++.+..|.+|++|+||..|+..+..+.
T Consensus 186 ~~~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~ 236 (246)
T 3f1c_A 186 TPEKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERI 236 (246)
T ss_dssp CHHHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC
T ss_pred HHcCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccc
Confidence 11111122344443333 568999999899999999999999999876543
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=163.27 Aligned_cols=214 Identities=18% Similarity=0.139 Sum_probs=145.7
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhh-HHHHHHhhccCCCCccc
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSAS-LNRHLARAYNYGSGVTF 85 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~-i~~~~~~~~~~~~~~~~ 85 (442)
+|.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++++|++++...+ +.+++. +.
T Consensus 2 ~~~~vIlA~G~g~R~~---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~-------~~-- 68 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLR---AGRPKAFVTLGGT-PLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFG-------GE-- 68 (223)
T ss_dssp CEEEEEECCCCCGGGT---SSSCGGGSEETTE-EHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTC-------BT--
T ss_pred ceEEEEECCccCcccC---CCCCCeeeEECCe-EHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhc-------cC--
Confidence 5899999999999998 4689999999999 99999999999988 89999999876533 333321 10
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeec-CHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~~~~~~~~~tl~~ 163 (442)
.+.++. +. .+.+++++.++..++. .+.+++++||+ ++.. .+.++++.|. .+.+.++.+
T Consensus 69 ---~v~~~~--~~---------~~~~~~i~~al~~~~~-----~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~ 128 (223)
T 2xwl_A 69 ---DSVIVS--GG---------VDRTESVALALEAAGD-----AEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPG 128 (223)
T ss_dssp ---TEEEEE--CC---------SSHHHHHHHHHTTCTT-----CSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEE
T ss_pred ---CeEEEc--CC---------CCHHHHHHHHHHhcCC-----CCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEE
Confidence 133332 11 2578889888877721 36889999999 4444 5889998883 344566666
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+..+ +.. + .|++|++..+.+++.. ......|+|++..+..+++...
T Consensus 129 ~~~~d--~~~--~--~~~~g~~~~~~e~~~l-------------------------~~~~~p~~f~~~~l~~~~~~~~-- 175 (223)
T 2xwl_A 129 LAPAD--TIK--A--VDANGAVLGTPERAGL-------------------------RAVQTPQGFHADVLRRAYARAT-- 175 (223)
T ss_dssp ECCSS--CEE--E--ECTTSBEEECCCGGGE-------------------------EEECSCEEEEHHHHHHHHTTCC--
T ss_pred Eeccc--ceE--E--EcCCCcEEeecChHHh-------------------------eeeeCCcccCHHHHHHHHHHhh--
Confidence 55543 212 2 2667888877665421 1112468899887766654321
Q ss_pred Ccccccchhhhccc-ccceEEEEecceeeecCChHHHHHHhhhhhc
Q 013483 244 ANDFGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 244 ~~~~~~~~l~~~i~-~~~i~~~~~~g~~~di~t~~~~~~an~~~l~ 288 (442)
..+..+....+.. +.++..++.++.|+||+||+||..|+..+..
T Consensus 176 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~ 220 (223)
T 2xwl_A 176 -AGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAH 220 (223)
T ss_dssp -SCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHH
T ss_pred -CCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhh
Confidence 1112233332222 4568888888899999999999999887654
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-19 Score=164.79 Aligned_cols=224 Identities=11% Similarity=0.053 Sum_probs=136.5
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccCh-hhHHHHHHhhccCCCCcccC
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~ 86 (442)
|.+||||||.|+||++ ..+||+|+|++|+ |||+|+++++.++ ++++|+|++++.. +.+.+++.+ + + ..+.
T Consensus 3 ~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~-~--~--~~~~ 74 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGI--SNLPKQFLELGDR-PILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDK-Y--L--PLYK 74 (236)
T ss_dssp EEEEEEEC-------------CGGGSEETTE-EHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHH-H--C--GGGG
T ss_pred eEEEEeCCccccccCC--CCCCCeeeeeCCc-cHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHh-c--c--cccc
Confidence 7899999999999997 5789999999999 9999999999998 5999999999876 456655543 2 1 1110
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCC--ccCeEEEEcCCe-eee-cCHHHHHHHHHHcCCcEEEE
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNK--VIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITIS 162 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~--~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~~~~tl~ 162 (442)
..+.... . ..|+.++++.++..+... .. ..+.+++++||+ ++. ..+.++++.|++.++ .+.
T Consensus 75 -~~~~~~~---~--------~~~~~~~i~~~l~~~~~~-~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~ 139 (236)
T 2vsh_A 75 -ERIIITK---G--------GADRNTSIKNIIEAIDAY-RPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDT 139 (236)
T ss_dssp -GGEEEEE---C--------CSSHHHHHHHHHHHHHHH-SCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEE
T ss_pred -CceEEEC---C--------CCchHHHHHHHHHHHHhh-ccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEE
Confidence 0122111 0 136888999888877310 00 036789999999 554 458899998887654 234
Q ss_pred EeecCCCcCCcccEEEEcCCC-ceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 013483 163 CLPMDDSRASDFGLMKINNEG-RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (442)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~-~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~ 241 (442)
+.+..+ + +..+++| ++..+.+++.. ......|+|+++.+..+++...
T Consensus 140 ~~~~~~--~-----~~~~~~g~~~~~~~~~~~~-------------------------~~~~~p~~f~~~~l~~~~~~~~ 187 (236)
T 2vsh_A 140 VVEAVD--T-----IVESTNGQFITDIPNRAHL-------------------------YQGQTPQTFRCKDFMDLYGSLS 187 (236)
T ss_dssp EEECCS--C-----EEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTCC
T ss_pred EEeccc--c-----EEEeCCCCeeeeecChHHh-------------------------eeecCCcEecHHHHHHHHHHHH
Confidence 444433 1 2223566 67666554211 1112488999998876665421
Q ss_pred CCCcccccchhhhccc-ccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 242 PTANDFGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 242 ~~~~~~~~~~l~~~i~-~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
........+.+..+.. +.++..+..+++|.||+||+||..|+..+.
T Consensus 188 ~~g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~~ 234 (236)
T 2vsh_A 188 DEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIE 234 (236)
T ss_dssp HHHHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHTC
T ss_pred hcCCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHhh
Confidence 1000001222233222 457888888889999999999999987653
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=159.31 Aligned_cols=220 Identities=13% Similarity=0.097 Sum_probs=131.7
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
++|.+||||||.|+||++ ..||+|+|++|+ |||+|+++.+.+++ +++|+|++++..+.+.+ +.+. +.
T Consensus 5 ~~~~aiIlA~G~g~R~~~---~~~K~l~~~~gk-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~---~~---- 72 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGA---DKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTA---FP---- 72 (231)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHH---CT----
T ss_pred CceEEEEEcccccccCCC---CCCceEeEECCe-EHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhc---CC----
Confidence 468999999999999995 579999999999 99999999999985 99999999887666665 4331 10
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCC-CCccCeEEEEcCCe-eeec-CHHHHHHHHHHcCCcEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR-NKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITIS 162 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~-~~~~~~~lv~~gD~-i~~~-~l~~~l~~~~~~~~~~tl~ 162 (442)
..+.++. . ..|++++++.+...+.... ....+.+++++||. +++. .+.++++.+.+.+..+ +.
T Consensus 73 --~~i~~~~--~---------~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~~-~~ 138 (231)
T 1vgw_A 73 --QVRVWKN--G---------GQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGG-IL 138 (231)
T ss_dssp --TSEEECC--C---------CSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCE-EE
T ss_pred --CceEEEc--C---------CCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeE-EE
Confidence 0133331 1 1489999999888773100 00147899999998 5444 4788888886654233 33
Q ss_pred EeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 013483 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (442)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~ 242 (442)
+.+..+. . ...++|++....++. . .+...+.|+|+++.|..+++....
T Consensus 139 ~~~~~~~------~-~~~~~g~i~~~~~~~---~----------------------~~~~~~p~~f~~~~l~~~~~~~~~ 186 (231)
T 1vgw_A 139 AVPVADT------L-KRAESGQISATVDRS---G----------------------LWQAQTPQLFQAGLLHRALAAENL 186 (231)
T ss_dssp EEECCSC------E-EEESSSBEEEEECCT---T----------------------EEEEEEEEEEEHHHHHHHHHC---
T ss_pred Eeecccc------e-EEeCCCceEecCChH---H----------------------heeeeCCcEecHHHHHHHHHHHhh
Confidence 4443321 1 112345554332211 0 112235899999888766654221
Q ss_pred CCcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhh
Q 013483 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 243 ~~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~ 286 (442)
........++... +.++..+..++.|.||+||+||..|+..+
T Consensus 187 ~g~~~~~~~~~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~~l 228 (231)
T 1vgw_A 187 GGITDEASAVEKL--GVRPLLIQGDARNLKLTQPQDAYIVRLLL 228 (231)
T ss_dssp -CCCSHHHHHHTT--TCCCEEEECCTTCCCCCSHHHHHHHHHHC
T ss_pred cCCCcHHHHHHHc--CCCEEEEECCccccCcCCHHHHHHHHHHH
Confidence 1100001122221 35677777778999999999999998764
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-19 Score=163.01 Aligned_cols=219 Identities=12% Similarity=0.106 Sum_probs=136.6
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
+++.+||||||.|+||+ ..+||+|+|++|+ |||+|+++.+.++ ++++|+|++++..+++.+++... +
T Consensus 3 ~~~~aiIlAaG~g~R~~---~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~--------~ 70 (228)
T 2yc3_A 3 KSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEES--------I 70 (228)
T ss_dssp TCEEEEEECCCCC----------CGGGSEETTE-EHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTT--------S
T ss_pred cceEEEEECCccccccC---CCCCccEeEECCE-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHh--------C
Confidence 46899999999999997 4679999999999 9999999999998 89999999988766555444221 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~~~~tl~~ 163 (442)
+. .+.++. .. .|..++++.++..+.. ..+.++++.||. ++. ..+.++++.|++.++ ++.+
T Consensus 71 ~~-~v~~~~--~~---------~~~~~sv~~al~~~~~----~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~--~i~~ 132 (228)
T 2yc3_A 71 DV-DLSFAI--PG---------KERQDSVYSGLQEIDV----NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLG 132 (228)
T ss_dssp SS-EEEEEC--CC---------SSHHHHHHHHHTTSCT----TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEE
T ss_pred CC-cEEEEC--CC---------CCHHHHHHHHHHhhcc----CCCEEEEecCCCccCCHHHHHHHHHHHHhcCc--eEEE
Confidence 11 133332 11 3788999999887752 136788999997 544 458899998876653 4444
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+..+. +...++++.+.++.+++. .+... ..|+|+++.|.++++.....
T Consensus 133 ~~~~~~------~~~~~~~~~v~~~~~~~~------------------------~~~~~-~~~~f~~~~l~~~~~~~~~~ 181 (228)
T 2yc3_A 133 VPAKAT------IKEVNSDSLVVKTLDRKT------------------------LWEMQ-TPQVIKPELLKKGFELVKSE 181 (228)
T ss_dssp EECCSC------CCCBCTTSCBCCCCSCCC------------------------CEEEE-EEEEECHHHHHHHHHHHHHH
T ss_pred Eeccce------EEEEcCCCceEEecCccc------------------------eEEEe-CCcEEEHHHHHHHHHHHHhc
Confidence 443321 111234445543322111 01223 48999988766655432111
Q ss_pred Ccccccchhhhccc-ccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 244 ANDFGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 244 ~~~~~~~~l~~~i~-~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
.. ...+.+..+.+ +.++..+..+..|.+|+||+||..|+..+.
T Consensus 182 ~~-~~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~ 225 (228)
T 2yc3_A 182 GL-EVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILS 225 (228)
T ss_dssp TC-CCCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHT
T ss_pred CC-CcccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHh
Confidence 11 11233333332 456665555668999999999999987664
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=159.89 Aligned_cols=218 Identities=16% Similarity=0.134 Sum_probs=143.5
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
+++.|||||||.|+||+ ||+|+|++|+ |||+|+++.+.+++ +++|+|++++ +.+.+++.+ + +
T Consensus 3 m~~~aiIlA~G~g~R~~------~K~l~~i~gk-pll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~~-~--~----- 65 (228)
T 1ezi_A 3 KQNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAKN-F--G----- 65 (228)
T ss_dssp CEEEEEEECCSSCSSST------TTTTCEETTE-EHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHHH-T--T-----
T ss_pred CceEEEEecCCCCCCCC------CcccceeCCc-CHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHHH-c--C-----
Confidence 45789999999999997 9999999999 99999999999998 7999999963 455555533 1 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~~~~tl~~ 163 (442)
++++.....-.. ...|+.++++.+...+.. ..+.|++++||. ++. ..+.++++.|++.++++++.+
T Consensus 66 ----~~~~~~~~~~~~----~~~g~~~sv~~~l~~~~~----~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~ 133 (228)
T 1ezi_A 66 ----VEVVLRPAELAS----DTASSISGVIHALETIGS----NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSA 133 (228)
T ss_dssp ----CEEEECCC----------CHHHHHHHHHHHHHTC----CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEE
T ss_pred ----CEEEeCchHHcC----CCCChHHHHHHHHHHhCC----CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 112111000000 024789999999988841 137899999998 444 458889888877666777777
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+..+. + ++....|++|.+..+.++.... ...+.. ...+..+.|+|+++++.+....+
T Consensus 134 ~~~~~~-p--~~~~~~~~~g~~~~~~~~~~~~-------------~~~~~~-~~~~~~~~giy~~~~~~l~~~~~----- 191 (228)
T 1ezi_A 134 CPMEHH-P--LKTLLQINNGEYAPMRHLSDLE-------------QPRQQL-PQAFRPNGAIYINDTASLIANNC----- 191 (228)
T ss_dssp EECSSC-T--TSCEEECC--CEEESSCHHHHT-------------CCGGGS-CCEEEEEEEEEEEEHHHHHHHTS-----
T ss_pred EecCCC-c--ceeeEEcCCCcEeecccccccc-------------CCcccC-chhheeeeEEEEEeHHHHhhCCc-----
Confidence 766542 2 2333336778888776521000 000000 01134578999999887643210
Q ss_pred CcccccchhhhcccccceEEEEec-ceeeecCChHHHHHHhhhhh
Q 013483 244 ANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 244 ~~~~~~~~l~~~i~~~~i~~~~~~-g~~~di~t~~~~~~an~~~l 287 (442)
..+.++..+..+ ..|.||+||+||..|+..+.
T Consensus 192 ------------~~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~ 224 (228)
T 1ezi_A 192 ------------FFIAPTKLYIMSHQDSIDIDTELDLQQAENILN 224 (228)
T ss_dssp ------------SCCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC
T ss_pred ------------ccCCceEEEEeCcccccCCCCHHHHHHHHHHHH
Confidence 014566667765 58999999999999987654
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-18 Score=171.53 Aligned_cols=343 Identities=11% Similarity=0.101 Sum_probs=196.3
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeec-Cccceehhhhhhhhhc----CCc-EEEEEec-cChhhHHHHHHhhcc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCINS----GIN-KVYILTQ-YNSASLNRHLARAYN 78 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~-g~~pli~~~l~~l~~~----gi~-~i~iv~~-~~~~~i~~~~~~~~~ 78 (442)
..++.+||||||.||||+ ...||+|+||+ |+ |||+++++++.+. |.. .++|+++ +..+.+.+++.+...
T Consensus 90 ~~k~avViLAGG~GTRmg---s~~PK~l~~V~~gk-~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~ 165 (488)
T 2i5k_A 90 LSKLAVLKLNGGLGTSMG---CVGPKSVIEVREGN-TFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSA 165 (488)
T ss_dssp GGGEEEEEECCCBSGGGT---CCSBSTTSCCBTTB-CHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCS
T ss_pred cCCceEEEEcCCCcccCC---CCCCccccccCCCC-cHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccc
Confidence 467899999999999998 78999999999 89 9999999999887 533 4667666 777889989876322
Q ss_pred CCCCcccCCceEEEeccccc---------------CC--cCCCccccChHHHHHHh-----hhhhcCCCCCccCeEEEEc
Q 013483 79 YGSGVTFGDGCVEVLAATQT---------------PG--EAGKRWFQGTADAVRQF-----HWLFEDPRNKVIEDVLILS 136 (442)
Q Consensus 79 ~~~~~~~~~~~v~i~~~~~~---------------~~--~~~~~~~~G~~~al~~~-----~~~l~~~~~~~~~~~lv~~ 136 (442)
|+. ++....|. .. +.-...|.|+++++... ++.+.. ...++++|++
T Consensus 166 fg~---------~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~---~g~~~v~V~n 233 (488)
T 2i5k_A 166 NRI---------RIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIA---QGREILFVSN 233 (488)
T ss_dssp SSC---------EEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHH---TTCCEEEEEC
T ss_pred cCc---------eEEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHh---cCCCEEEEEe
Confidence 221 11111121 00 00112468999999843 233411 1247999999
Q ss_pred CCeeee-cCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccc
Q 013483 137 GDHLYR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAE 215 (442)
Q Consensus 137 gD~i~~-~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~ 215 (442)
+|.++. .++. ++.+|..+++++++.+.+..++ ...||.+..+ +|+ ..+.|..+.+.......+ ..
T Consensus 234 gDnL~~~~d~~-~L~~~~~~~a~~t~~v~~~~~p-~~~yG~Iv~~-dG~-~~iVE~~e~~~e~~~~~~--------~~-- 299 (488)
T 2i5k_A 234 GDNLGATVDLK-ILNHMIETGAEYIMELTDKTRA-DVKGGTLISY-DGQ-VRLLEVAQVPKEHIDEFK--------NI-- 299 (488)
T ss_dssp TTBSSCCCCHH-HHHHHHHSCCSEEEEEEECCGG-GSSSCEEEEE-TTE-EEEECGGGSCTTSHHHHT--------CT--
T ss_pred CCcCCCcccHH-HHHHHHhcCCcEEEEEEEecCC-CCceeEEEEE-CCc-EEEEEeccCCHHHHhhcc--------cc--
Confidence 999776 4564 6688889999999988876542 2348988764 565 445553332211000000 00
Q ss_pred cccceeeeeEEEEeHHHHHHHHhhhCCCCccc-----------------ccchhhhcccc-cceEEEEec-ceeeecCCh
Q 013483 216 EKPYIASMGVYLFKKEILLNLLRWRFPTANDF-----------------GSEIIPASANE-QFLKAYLFN-DYWEDIGTI 276 (442)
Q Consensus 216 ~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~~-----------------~~~~l~~~i~~-~~i~~~~~~-g~~~di~t~ 276 (442)
......++|+|+|+.++|.+++++.......+ .+.++.+++.- .+..++.++ ..|.-+.+.
T Consensus 300 ~~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~~~~~~~~~qlE~~~~d~~~~~~~~~~~~V~R~~F~PvKn~ 379 (488)
T 2i5k_A 300 RKFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPRSRFLPVKTC 379 (488)
T ss_dssp TTCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC-----CEECCBCCGGGGGGGSSSCEEEEECGGGCCBCCSH
T ss_pred cccCEEEEEEEEEeHHHHHHHHhhccCCCcceecCccccCCCCCCceEEeeehhhhHHhhccCceEEEecccccccccCC
Confidence 01245699999999999988887521110000 01112222210 122233332 357777787
Q ss_pred HHHHHHhhhhhcCCCCccccCCC-CcccccCccCCCceecCCceee--eEEcC-CCEEeceEEeeeEEcCCcEECCCCEE
Q 013483 277 RSFFEANLALTAHPPMFSFYDAT-KPIYTSRRNLPPSKIDDSKIVD--SIISH-GSFITSSFIEHSVVGIRSRINANVHL 352 (442)
Q Consensus 277 ~~~~~an~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~i~~--~~i~~-~~~i~~~~i~~~~ig~~~~i~~~~~i 352 (442)
.+++-+...+.....+.....+. .++.+.+..++. + ..+.+ ..+.. ...+.- ..-+|-.++..|.++.+
T Consensus 380 ~~ll~~~~~~~~~~~g~~~~~~~~~e~~P~v~~~~~--~--~~~~~~~~rf~~~p~i~~~---~~l~v~Gdv~fg~~v~l 452 (488)
T 2i5k_A 380 SDLLLVKSDLFRLEHGSLKLDPSRFGPNPLIKLGSH--F--KKVSGFNARIPHIPKIVEL---DHLTITGNVFLGKDVTL 452 (488)
T ss_dssp HHHHHHTSTTEEEETTEEEECTTCCSSCCEEEECGG--G--SSHHHHHHHCSSCCBCTTE---EEEEEESSEEECTTCEE
T ss_pred ccHHHHHHHHHHHhcCcEeecCCcCCCCCeEEECCc--c--cchhhHHhhcCCCcccccc---ceEEEEeeeEEcCCcEE
Confidence 77776666544332221111111 111121221211 1 01100 00111 111110 23466668888888888
Q ss_pred eceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEE
Q 013483 353 KDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARI 399 (442)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~i 399 (442)
...+++-++ ++ .++.|-++++++|.+|..+.+|
T Consensus 453 ~G~v~i~a~-------------~~-~~~~ip~g~~l~n~~~~~~~~~ 485 (488)
T 2i5k_A 453 RGTVIIVCS-------------DG-HKIDIPNGSILENVVVTGNLQI 485 (488)
T ss_dssp EEEEEEECC-------------TT-CCEEECTTCEEEEEEEEEEEEE
T ss_pred EEEEEEEcC-------------CC-CeEEeCCCCEEecceeeccccc
Confidence 887777542 11 1378889999998888766665
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-18 Score=155.65 Aligned_cols=221 Identities=14% Similarity=0.130 Sum_probs=139.6
Q ss_pred ccccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCC
Q 013483 4 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSG 82 (442)
Q Consensus 4 ~~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~ 82 (442)
.++++|.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++..+.+.+ +.. + +.
T Consensus 3 ~~~~~~~~iIlA~G~g~R~~---~~~~K~l~~i~g~-pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~-~--~~- 73 (236)
T 1i52_A 3 TTHLDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPL-A--NH- 73 (236)
T ss_dssp --CCCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGG-G--GC-
T ss_pred CCCCceeEEEECCcCccccC---CCCCcceeeECCE-EHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHh-c--CC-
Confidence 34567999999999999998 4579999999999 99999999999987 89999999876555443 221 1 10
Q ss_pred cccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeec-CHHHHHHHHHHcCCcEE
Q 013483 83 VTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADIT 160 (442)
Q Consensus 83 ~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~~~~~~~~~t 160 (442)
..+.++. +. .|+.++++.++..+.. .+.|++++||. +++. .+.++++.+.+.+...
T Consensus 74 -----~~v~~~~--~~---------~g~~~~i~~al~~~~~-----~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~- 131 (236)
T 1i52_A 74 -----PQITVVD--GG---------DERADSVLAGLKAAGD-----AQWVLVHDAARPCLHQDDLARLLALSETSRTGG- 131 (236)
T ss_dssp -----TTEEEEE--CC---------SSHHHHHHHHHHTSTT-----CSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-
T ss_pred -----CCEEEEC--CC---------CCHHHHHHHHHHhcCC-----CCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-
Confidence 0133332 11 3788899988877742 37899999998 4554 3778888776554232
Q ss_pred EEEeecCCCcCCcccEEEEcCC-CceEEEEeCCCccccccccccccccccccccccccccee-eeeEEEEeHHHHHHHHh
Q 013483 161 ISCLPMDDSRASDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIA-SMGVYLFKKEILLNLLR 238 (442)
Q Consensus 161 l~~~~~~~~~~~~~g~v~~d~~-~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Giy~~~~~~l~~~l~ 238 (442)
+.+.+..+ +....+++ +++....+. ..++ ..+.++|+.+.+..+++
T Consensus 132 ~~~~~~~~------~~~~~~~~~~~i~~~~~~--------------------------~~i~~~~~p~~f~~~~l~~~~~ 179 (236)
T 1i52_A 132 ILAAPVRD------TMKRAEPGKNAIAHTVDR--------------------------NGLWHALTPQFFPRELLHDCLT 179 (236)
T ss_dssp EEEEECCS------CEEEECTTSSSEEEEECC--------------------------TTCEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEeccc------cEEEEcCCCCceeeccCh--------------------------HhheeeeCCceecHHHHHHHHH
Confidence 33333322 11112333 454432211 1122 22677888877666655
Q ss_pred hhCCCCcccc--cchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcC
Q 013483 239 WRFPTANDFG--SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (442)
Q Consensus 239 ~~~~~~~~~~--~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~ 289 (442)
........+. ..++... +.++..+..++.|+||+||+||..|+..+..+
T Consensus 180 ~~~~~g~~~td~~~~~~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~ 230 (236)
T 1i52_A 180 RALNEGATITDEASALEYC--GFHPQLVEGRADNIKVTRPEDLALAEFYLTRT 230 (236)
T ss_dssp HHHHTTCCCCSHHHHHHHT--TCCCEEEECCTTCCCCCSHHHHHHHHHHHCC-
T ss_pred HHHhcCCCcccHHHHHHHc--CCCEEEEecCccccccCCHHHHHHHHHHHHHh
Confidence 4221111111 1122221 35677777778899999999999998877543
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-19 Score=166.72 Aligned_cols=200 Identities=15% Similarity=0.163 Sum_probs=133.7
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (442)
+|.+||||||. |||.+.+...||+|+|++|+ |||+|+++.+.+++. +|+|++. . +++.+++ +
T Consensus 2 ~~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~-pll~~~l~~l~~~~~-~ivvv~~-~-~~i~~~~--------~----- 63 (232)
T 2dpw_A 2 RPSAIVLAGGK-EAWAERFGVGSKALVPYRGR-PMVEWVLEALYAAGL-SPVYVGE-N-PGLVPAP--------A----- 63 (232)
T ss_dssp CCEEEEECCCB-CSGGGTTTCSBGGGSEETTE-ETHHHHHHHHHHTTC-EEEEESC-C-SSCSSCC--------S-----
T ss_pred ceeEEEECCCC-CccccccCCCCceeeEECCE-EHHHHHHHHHHhcCC-EEEEEeC-h-HHHhhhc--------C-----
Confidence 58999999999 77776665689999999999 999999999999998 8888754 2 2221111 1
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe--eeecCHHHHHHHHHHcCCcEEEEEee
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
+.+ .. ..|++++++.+...+. +.|++++||+ +....+.++++ | ..++++++.+.+
T Consensus 64 --~~~---~~---------~~g~~~~i~~a~~~~~-------~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~ 120 (232)
T 2dpw_A 64 --LTL---PD---------RGGLLENLEQALEHVE-------GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVP 120 (232)
T ss_dssp --EEE---CC---------CSSHHHHHHHHHHTCC-------SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEE
T ss_pred --eEe---cC---------CCCHHHHHHHHHHHcC-------CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEee
Confidence 333 11 2599999999987764 6899999999 34455888888 6 556677777665
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh-----
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR----- 240 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~----- 240 (442)
..+. ...|+.+ .+++..+.||| .+++|+|+|+++++..+.+..
T Consensus 121 ~~~~-~~~~~~~----~~~v~~~~ek~---------------------------~~~~g~~~~~~~~l~~~~~~~~~~~~ 168 (232)
T 2dpw_A 121 KEAV-EARFPRT----KRTYARLREGT---------------------------FTGGNLLLLDKSLFRKALPLARRVVA 168 (232)
T ss_dssp HHHH-HHHCTTC----CCCCEEETTEE---------------------------EEECSEEEEEHHHHTTTHHHHHHHHH
T ss_pred ccch-hhhCCCc----ceeEEEEecCc---------------------------eeeeeEEEEcHHHHHHHHHHHHHHHH
Confidence 3221 1233322 13455554432 258899999999875443311
Q ss_pred CCC-------------------Ccccccchhhhccc--ccceEEEEe--cceeeecCChHHHH
Q 013483 241 FPT-------------------ANDFGSEIIPASAN--EQFLKAYLF--NDYWEDIGTIRSFF 280 (442)
Q Consensus 241 ~~~-------------------~~~~~~~~l~~~i~--~~~i~~~~~--~g~~~di~t~~~~~ 280 (442)
... ......++++.++. +.++..+.. .+.|.|+|||+||.
T Consensus 169 ~~~~P~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 169 LRKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp TTTCHHHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred hccCHHHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 000 01112345544443 367888877 46799999999984
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-18 Score=154.30 Aligned_cols=217 Identities=14% Similarity=0.174 Sum_probs=134.8
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
+++.|||||||.|+||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++.+ + +
T Consensus 2 ~~~~aiIlA~G~s~R~~------~K~l~~i~Gk-pli~~~i~~~~~~~~~~~ivv~~~--~~~i~~~~~~-~--g----- 64 (229)
T 1qwj_A 2 PHLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAKQ-F--G----- 64 (229)
T ss_dssp CCEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHH-T--T-----
T ss_pred CcEEEEEEcCCCCCCCC------CcccceECCE-EHHHHHHHHHHhCCCcCEEEEECC--hHHHHHHHHH-c--C-----
Confidence 46889999999999995 5999999999 99999999999998 599999883 4566666643 1 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~~~~tl~~ 163 (442)
++++....... .+ ..+..++++.+...+.. .+.|++++||. ++. ..+.++++.|.+.+++.++.+
T Consensus 65 ----~~~~~~~~~~~-~~---~~~~~~~v~~al~~~~~-----~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~ 131 (229)
T 1qwj_A 65 ----AQVHRRSSETS-KD---SSTSLDAIVEFLNYHNE-----VDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSV 131 (229)
T ss_dssp ----CEEEECCGGGS-ST---TCCHHHHHHHHHTTCTT-----CSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEE
T ss_pred ----CEEEeChhhhc-CC---CCcHHHHHHHHHHhcCC-----CCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 22221111000 00 12445788888877632 47899999999 444 458899999987777765555
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+..+ +..++. .| + +..|.+++..... ..++.+.....+..++|+|+|+++.| ++
T Consensus 132 ~~~~~--p~~~~v--~~--~-~~~~~~~~~~~~~----------~~~~~~~~~~~~~~n~giY~~~~~~l---~~----- 186 (229)
T 1qwj_A 132 VRRHQ--FRWSEI--QK--G-VREVTEPLNLNPA----------KRPRRQDWDGELYENGSFYFAKRHLI---EM----- 186 (229)
T ss_dssp EEECC--CEECCC--CS--S-TTCCCCBSSSBTT----------BCCCTTTSCCEEEEEEEEEEEEHHHH---HT-----
T ss_pred eeccC--hhHhhc--cc--c-ccccccccccccc----------cccCCCCCCceEEEeeEEEEEEHHHh---cc-----
Confidence 43322 333322 12 2 1112211100000 00000001123567999999999877 11
Q ss_pred CcccccchhhhcccccceEEEEec-ceeeecCChHHHHHHhhhhhc
Q 013483 244 ANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 244 ~~~~~~~~l~~~i~~~~i~~~~~~-g~~~di~t~~~~~~an~~~l~ 288 (442)
.+..+..+..+..+ ++|.||+||+||..|+..+..
T Consensus 187 ----------~~~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~ 222 (229)
T 1qwj_A 187 ----------GYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (229)
T ss_dssp ----------TCSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred ----------ccccCCeEEEEECCcccccCCCCHHHHHHHHHHHHH
Confidence 11223344332444 689999999999999887754
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=147.53 Aligned_cols=130 Identities=23% Similarity=0.340 Sum_probs=92.4
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|+|||||||.|+||+| .||+|+|++|+ |||+|+++.+.++++++|+|++++..+.+.+++.+.+.+..
T Consensus 1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~-pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~~~~~~------- 68 (196)
T 3rsb_A 1 MDALIMAGGKGTRMGG----VEKPLIKLCGR-CLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAYKDYK------- 68 (196)
T ss_dssp CEEEEEC----CGGGG----SCGGGCEETTE-EHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHHTTTTT-------
T ss_pred CEEEEECCCCCCcCCC----CCccEEEECCE-EHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhhccCCC-------
Confidence 6899999999999997 79999999999 99999999999999999999999888888888876442211
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCee-e-ecCHHHHHHHHHH-----cCCcEEE
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-Y-RMDYMDFVQNHRQ-----SGADITI 161 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i-~-~~~l~~~l~~~~~-----~~~~~tl 161 (442)
.+.++... ..|++++++.+...+ . +.|++++||+. + ...+.++++.|.+ .+.+..+
T Consensus 69 ~~~~~~~~----------~~g~~~si~~al~~~-~------~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~ 131 (196)
T 3rsb_A 69 NIVVIDTS----------GKGYIEDLNECIGYF-S------EPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALA 131 (196)
T ss_dssp EEEE------------------CCCCCTTTTTC-S------SCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEE
T ss_pred CEEEEECC----------CCCcHHHHHHHHHhC-C------CCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEE
Confidence 13333211 147777888877666 2 79999999993 3 4458999999886 5555555
Q ss_pred EEeecC
Q 013483 162 SCLPMD 167 (442)
Q Consensus 162 ~~~~~~ 167 (442)
.+.+..
T Consensus 132 ~~~p~~ 137 (196)
T 3rsb_A 132 VMIPKE 137 (196)
T ss_dssp EEEETT
T ss_pred EEEEcc
Confidence 555543
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-17 Score=143.59 Aligned_cols=115 Identities=14% Similarity=0.248 Sum_probs=86.6
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
++|.+||||||.|+||. .||+|+|++|+ |||+|+++.+.++++++++|++++..+++.+++.. ++
T Consensus 4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~---------~~ 68 (197)
T 2wee_A 4 TQITGVVLAAGRSNRLG-----TPKQLLPYRDT-TVLGATLDVARQAGFDQLILTLGGAASAVRAAMAL---------DG 68 (197)
T ss_dssp SEEEEEEEECCCCTTTS-----SCGGGSEETTE-EHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSCC---------TT
T ss_pred CceEEEEECCCCcccCC-----CCeEcCeeCCc-cHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhcc---------CC
Confidence 46899999999999995 79999999999 99999999999999999999998876666555421 11
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHH
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQN 151 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~ 151 (442)
+.++..... ..|++++++.+...+.. ..+.+++++||+ +++ ..+.++++.
T Consensus 69 ---~~~~~~~~~--------~~g~~~~i~~al~~~~~----~~~~vlv~~~D~P~~~~~~i~~l~~~ 120 (197)
T 2wee_A 69 ---TDVVVVEDV--------ERGCAASLRVALARVHP----RATGIVLMLGDQPQVAPATLRRIIDV 120 (197)
T ss_dssp ---SEEEECC------------CCHHHHHHHHTTSCT----TEEEEEEEETTCTTCCHHHHHHHHHH
T ss_pred ---CEEEECCCc--------ccCHHHHHHHHHHHhcc----cCCeEEEEeCCcCCCCHHHHHHHHhh
Confidence 223321111 25899999999887731 147899999999 444 447777776
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.7e-16 Score=140.82 Aligned_cols=217 Identities=17% Similarity=0.172 Sum_probs=144.4
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccCh-hhHHHHHHhhccCCCCccc
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS-ASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~ 85 (442)
++.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+.+.. .
T Consensus 7 ~~~aIIlAaG~g~Rmg---~~~~K~l~~l~Gk-pll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~------~--- 73 (231)
T 3q80_A 7 EVVAIVPAAGSGERLA---VGVPKAFYQLDGQ-TLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH------R--- 73 (231)
T ss_dssp CEEEEEECCCCCTTTC---SSSCGGGCEETTE-EHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG------G---
T ss_pred ceEEEEECCCCCccCC---CCCCceEEEECCe-EHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC------C---
Confidence 5789999999999997 5689999999999 99999999999875 899999998765 344443321 0
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~ 163 (442)
+.++. .. .+..++++.++..+... ...+.++++.||. ++..+ +.++++.+++ +.+..+..
T Consensus 74 ----v~~v~--gg---------~~r~~sv~~gl~~~~~~--~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~ 135 (231)
T 3q80_A 74 ----AMIVA--GG---------SNRTDTVNLALTVLSGT--AEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPV 135 (231)
T ss_dssp ----CEEEE--CC---------SSHHHHHHHHHGGGC-----CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEE
T ss_pred ----eEEEc--CC---------CchHHHHHHHHHHhhhc--CCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEE
Confidence 22322 10 23568888888877531 0136899999999 55544 7888887765 24556666
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+..++ . ...+++|.+....++ .. -+.+.+ -|.|+.+.|.++++....+
T Consensus 136 ~p~~dt--~----~~~~~~g~v~~~~~r---~~---------------------l~~~qT-Pq~F~~~~L~~a~~~~~~~ 184 (231)
T 3q80_A 136 LPLSDT--I----KAVDANGVVLGTPER---AG---------------------LRAVQT-PQGFTTDLLLRSYQRGSLD 184 (231)
T ss_dssp ECCSSC--E----EEECTTSBEEECCCG---GG---------------------EEEECS-CEEEEHHHHHHHHHHHTC-
T ss_pred EeccCC--E----EEEcCCCcEEEecch---hh---------------------eEEEcC-CcEEEHHHHHHHHHHHHhh
Confidence 666542 1 124667777665431 11 022343 6999999888887764332
Q ss_pred -Ccccccchhhhcc-cccceEEEEecceeeecCChHHHHHHhhhh
Q 013483 244 -ANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 244 -~~~~~~~~l~~~i-~~~~i~~~~~~g~~~di~t~~~~~~an~~~ 286 (442)
......|....+. .+.++..++-+..++.|++|+||..|+..+
T Consensus 185 n~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l 229 (231)
T 3q80_A 185 LPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229 (231)
T ss_dssp ----CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHh
Confidence 1111223322222 256777777777789999999999998765
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=142.41 Aligned_cols=188 Identities=12% Similarity=0.171 Sum_probs=125.4
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
+++.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+++++++|++++..+++.+++.. ++
T Consensus 4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~---------~~ 68 (199)
T 2waw_A 4 SRVTGVVLAAGYSRRLG-----TPKQLLPLGDT-TLLGATLAMARRCPFDQLIVTLGGAADEVLEKVEL---------DG 68 (199)
T ss_dssp CCEEEEEEESSCCTTTT-----SCGGGCEETTE-EHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSCC---------TT
T ss_pred CceEEEEECCCCCCCCC-----CCEEeCEeCcc-CHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc---------CC
Confidence 46899999999999996 69999999999 99999999999999999999998876666555421 11
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeee--ecCHHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY--RMDYMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~--~~~l~~~l~~~~~~~~~~tl~~~ 164 (442)
+.++..... ..|++++++.+...+.. ..+.+++++||+.+ ...+.++++. +.++++++...
T Consensus 69 ---~~~~~~~~~--------~~g~~~~i~~al~~~~~----~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~ 131 (199)
T 2waw_A 69 ---LDIVLVDDA--------GLGCSSSLKSALTWVDP----TAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY 131 (199)
T ss_dssp ---SEEEECCCC--------CTTCCCHHHHHHHTSCT----TCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE
T ss_pred ---CEEEECCCc--------ccCHHHHHHHHHHhhhc----cCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec
Confidence 223321111 25888899999887731 14789999999943 3447788876 34444332210
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~ 244 (442)
+++ .. .-++|+++.+..+.+ . ...
T Consensus 132 -----------------~g~----------~~---------------------------~P~~~~~~~l~~~~~-~-~~~ 155 (199)
T 2waw_A 132 -----------------ANG----------IG---------------------------HPFWVSRGVFGDLAE-L-HGD 155 (199)
T ss_dssp -----------------TTE----------EE---------------------------EEEEEEGGGHHHHHT-C-SST
T ss_pred -----------------CCc----------cc---------------------------CCEEEcHHHHHHHHh-c-CCC
Confidence 010 00 113677777755542 1 111
Q ss_pred cccccchhhhcccc--cceEEEEe-cceeeecCChHHHHHHhhhhh
Q 013483 245 NDFGSEIIPASANE--QFLKAYLF-NDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 245 ~~~~~~~l~~~i~~--~~i~~~~~-~g~~~di~t~~~~~~an~~~l 287 (442)
. . +..++.. .++..+.. .+.|.|||||+||..++..+.
T Consensus 156 ~----~-~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~~ 196 (199)
T 2waw_A 156 K----G-VWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASVV 196 (199)
T ss_dssp T----C-HHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHHH
T ss_pred H----H-HHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHHh
Confidence 1 1 2222322 45777766 468999999999999987654
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=147.20 Aligned_cols=206 Identities=13% Similarity=0.090 Sum_probs=124.5
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
+++.|||||||.|+||++ . ||+|+|++|+ |||+|+++. ..++++|+|++++ .+.+ + .. .+
T Consensus 24 M~~~aiILAgG~s~Rm~~---~-~K~l~~i~gk-pli~~~l~~--~~~~~~ivvv~~~---~~~~-~------~~---~~ 83 (236)
T 2px7_A 24 MEVSVLIPAAGNGLRLGR---G-PKAFLQVGGR-TLLEWTLAA--FRDAAEVLVALPP---GAEP-P------KG---LG 83 (236)
T ss_dssp CCCEEEEECCC----------C-CGGGCBCSSS-BHHHHHHHH--TTTCSEEEEEECT---TCCC-C------TT---CS
T ss_pred CceEEEEEcCCCCccCCC---C-CCeEEEECCE-EHHHHHHHh--cCCCCeEEEEeCH---HHHH-h------hc---CC
Confidence 356699999999999983 4 9999999999 999999999 7789999999975 1111 1 10 01
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~ 164 (442)
+.++. .. .|+..+++.++..+. .+.+++++||+ +++.. +.++++.+...+ ..+.+.
T Consensus 84 ---v~~~~--~~---------~~~~~~i~~al~~~~------~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~--~~i~~~ 141 (236)
T 2px7_A 84 ---AVFLE--GG---------ATRQASVARLLEAAS------LPLVLVHDVARPFVSRGLVARVLEAAQRSG--AAVPVL 141 (236)
T ss_dssp ---CEEEE--CC---------SSHHHHHHHHHHHCC------SSEEEECCTTCCCCCHHHHHHHHHHHHHHS--EEEEEE
T ss_pred ---cEEEe--CC---------CchHHHHHHHHHHcC------CCeEEEecCccccCCHHHHHHHHHHHHhcC--CeEEEE
Confidence 22221 11 367888888887775 37899999998 55544 788888876654 334334
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~ 244 (442)
+..+ .. . ..+ +|++..+.++.. .+... ..++|+++.|..+++......
T Consensus 142 ~~~~--~~---~-~~~-~G~v~~~~~~~~------------------------~~~~~-~~~~f~~~~l~~~~~~~~~~g 189 (236)
T 2px7_A 142 PVPD--TL---M-APE-GEAYGRVVPREA------------------------FRLVQ-TPQGFFTALLREAHAYARRKG 189 (236)
T ss_dssp ECCS--EE---E-EEC-SSSCEEEECGGG------------------------CEEEC-SCEEEEHHHHHHHHHHHHHHT
T ss_pred ecCC--cE---E-Eec-CCeEEecCChHh------------------------hcccc-CCeEEcHHHHHHHHHHHHhcC
Confidence 4332 11 1 124 677765543211 01112 356788887755554321100
Q ss_pred cccc--cchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhc
Q 013483 245 NDFG--SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 245 ~~~~--~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~ 288 (442)
..+. ..++.. .+.++..+..++.|.||+||+||..|+..+..
T Consensus 190 ~~~~d~~~ll~~--~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 233 (236)
T 2px7_A 190 LEASDDAQLVQA--LGYPVALVEGEATAFKITHPQDLVLAEALARV 233 (236)
T ss_dssp CCCSSHHHHHHH--TTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC
T ss_pred CCchhHHHHHHH--cCCcEEEEECCccccCCCCHHHHHHHHHHHHh
Confidence 1110 112222 14567777777899999999999999887643
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.8e-16 Score=141.46 Aligned_cols=215 Identities=17% Similarity=0.188 Sum_probs=133.8
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
-.|.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++....+ +.+.. . +
T Consensus 12 ~~~~aiILAaG~s~Rm~---~~~~K~l~~i~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~---~~~~~--~----~ 78 (234)
T 1vpa_A 12 HMNVAILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFEV---VEKRV--F----H 78 (234)
T ss_dssp CCEEEEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHHH---HHTTC--C----C
T ss_pred ccCeEEEEcCcchhhcC---CCCCceEEEECCe-EHHHHHHHHHHcCCCCCeEEEEEChHHHHH---HHHHh--c----c
Confidence 35889999999999998 4579999999999 99999999999998 899999998765432 11111 1 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeec-CHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~~~~~~~~~tl~~ 163 (442)
.. .+... .. -.+..++++.++..+... ..+.+++++||. ++.. .+.++++.+...++ .+.+
T Consensus 79 ~~-~~~~~---~g--------g~~~~~sv~~al~~~~~~---~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~--~i~~ 141 (234)
T 1vpa_A 79 EK-VLGIV---EG--------GDTRSQSVRSALEFLEKF---SPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLA 141 (234)
T ss_dssp TT-EEEEE---EC--------CSSHHHHHHHHHHHHGGG---CCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEE
T ss_pred CC-ceEEe---CC--------CCcHHHHHHHHHHHhhhc---CCCEEEEecCcccCCCHHHHHHHHHHHHhcCC--EEEE
Confidence 11 12111 00 013778888888777410 135788889999 5554 47888888766543 3333
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+..+ ++...+++| + .+.++.. .+.....++|+.+.+..+++... .
T Consensus 142 ~~~~~------~~~~~~~~g-v-~~~~r~~-------------------------~~~~~~p~~f~~~~l~~~~~~~~-~ 187 (234)
T 1vpa_A 142 LKNSD------ALVRVENDR-I-EYIPRKG-------------------------VYRILTPQAFSYEILKKAHENGG-E 187 (234)
T ss_dssp EECCS------EEEEEETTE-E-EEECCTT-------------------------EEEEEEEEEEEHHHHHHHHTTCC-C
T ss_pred EecCC------cEEEECCCC-c-ccCChhH-------------------------eeeecCCccccHHHHHHHHHhcC-C
Confidence 33322 122234556 5 5543211 01122455889888766654310 0
Q ss_pred CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhc
Q 013483 244 ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 244 ~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~ 288 (442)
... ...++.. .+.++..+..++.|.||+||+||..|++.+..
T Consensus 188 ~~~-~~~~~~~--~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 229 (234)
T 1vpa_A 188 WAD-DTEPVQK--LGVKIALVEGDPLCFKVTFKEDLELARIIARE 229 (234)
T ss_dssp CSS-SHHHHHT--TTCCCEEEECCGGGCCCCSTTHHHHHHHHHHH
T ss_pred CCc-HHHHHHH--cCCcEEEEECCchhcCCCCHHHHHHHHHHHhc
Confidence 000 0112222 13566667667789999999999999886643
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=148.12 Aligned_cols=146 Identities=15% Similarity=0.129 Sum_probs=111.9
Q ss_pred CCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEE-------------eceEEEC
Q 013483 297 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHL-------------KDTMMLG 359 (442)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i-------------~~~~~~~ 359 (442)
+|.+.+.+++.+++.+.+ +.+.|. ++.||++|+|+ ++.| .+++||++|.|++++.| ...+.+|
T Consensus 4 ~p~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG 83 (259)
T 3hsq_A 4 HPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIG 83 (259)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEEC
T ss_pred CCCcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEEC
Confidence 344444444444444444 333332 67888888888 6777 46999999999999999 6788888
Q ss_pred CccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCC
Q 013483 360 ADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKN 433 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~ 433 (442)
+++.+.+....+..+....++.||++|.|. ++.|+++|.||+++.+++...+..+++||++++||.+++| ||++
T Consensus 84 ~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~ 163 (259)
T 3hsq_A 84 DHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDY 163 (259)
T ss_dssp SSCEECTTCEEECCSBTTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTCEECTT
T ss_pred CCcEECCCCEECCCccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCCEECCC
Confidence 887777755444433332338999999997 6999999999999999999999899999999999999887 8999
Q ss_pred cEEcCCccC
Q 013483 434 SVITDGFVI 442 (442)
Q Consensus 434 ~~v~~~~~i 442 (442)
++|++||+|
T Consensus 164 ~~Vg~~s~V 172 (259)
T 3hsq_A 164 SMVAGLAKV 172 (259)
T ss_dssp CEECSSEEE
T ss_pred CEECCCCEE
Confidence 999998864
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=146.66 Aligned_cols=147 Identities=17% Similarity=0.163 Sum_probs=117.1
Q ss_pred cCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEEe-eeEEcCCcEECCCCEEe------------ceEEEC
Q 013483 296 YDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK------------DTMMLG 359 (442)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~------------~~~~~~ 359 (442)
++|.+.+.+++.+++.+.| +++.|. ++.||++|+|+ ++.|. +++||++|.|+++++|+ ..+++|
T Consensus 4 I~p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG 83 (270)
T 1j2z_A 4 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG 83 (270)
T ss_dssp BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEEC
Confidence 4556666666666666666 455564 78899999998 77774 89999999999999995 567788
Q ss_pred CccccchhhhhhhhcCCC-cceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcC
Q 013483 360 ADFYETDAEVASLLAEGR-VPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILK 432 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~ 432 (442)
+++.+++....+..+... .++.||++|.|. +++|+++|.||+++++++...+..+++||++++||.+++| ||+
T Consensus 84 ~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~IG~ 163 (270)
T 1j2z_A 84 EDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAK 163 (270)
T ss_dssp SSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECT
T ss_pred CCCEECCCeEEcCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCcEeCC
Confidence 887777655444433211 238999999997 7999999999999999999888899999999999999887 899
Q ss_pred CcEEcCCccC
Q 013483 433 NSVITDGFVI 442 (442)
Q Consensus 433 ~~~v~~~~~i 442 (442)
+++||++|+|
T Consensus 164 ~a~Ig~~s~V 173 (270)
T 1j2z_A 164 GCMIAGKSAL 173 (270)
T ss_dssp TCEECTTCEE
T ss_pred ceEEecCcEe
Confidence 9999999864
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-16 Score=145.81 Aligned_cols=147 Identities=15% Similarity=0.163 Sum_probs=112.2
Q ss_pred cCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEe-------------ceEEE
Q 013483 296 YDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLK-------------DTMML 358 (442)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~-------------~~~~~ 358 (442)
++|.+.+.+++.+++.+.| +.+.|. ++.||++|+|+ ++.| .+++||++|.|++++.|+ ..+.+
T Consensus 7 I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~I 86 (266)
T 3r0s_A 7 IHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVI 86 (266)
T ss_dssp BCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEE
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEE
Confidence 3444444455555555554 334443 67888888888 6777 479999999999999996 67888
Q ss_pred CCccccchhhhhhhhcCC-CcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----Ec
Q 013483 359 GADFYETDAEVASLLAEG-RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----IL 431 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~ 431 (442)
|+++.+.+....+..+.. ..++.||++|.|. +++|+++|+||+++.+++...+.++.+||++++||.+++| ||
T Consensus 87 G~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig 166 (266)
T 3r0s_A 87 GKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVG 166 (266)
T ss_dssp CTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CCCCEECCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCcEEC
Confidence 888877775444433321 1237899999997 7999999999999999998888889999999999999888 89
Q ss_pred CCcEEcCCccC
Q 013483 432 KNSVITDGFVI 442 (442)
Q Consensus 432 ~~~~v~~~~~i 442 (442)
++++|+++|+|
T Consensus 167 ~~a~Vg~~s~V 177 (266)
T 3r0s_A 167 EGCMIAGASAL 177 (266)
T ss_dssp TTCEECSSCBB
T ss_pred CCCEEccCCeE
Confidence 99999999875
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-16 Score=148.91 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=101.0
Q ss_pred ccCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec----e-----------
Q 013483 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD----T----------- 355 (442)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~----~----------- 355 (442)
.++|.+.+.+++.+++++.| +++.|. ++.||++|+|+ ++.| .+++||++|.|+++++|+. .
T Consensus 9 ~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~ 88 (305)
T 3t57_A 9 LIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGH 88 (305)
T ss_dssp CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECT
T ss_pred eECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECC
Confidence 45556666666666666665 444443 56666666666 5555 3555665555555555532 1
Q ss_pred --------------------EEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccc
Q 013483 356 --------------------MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEA 414 (442)
Q Consensus 356 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~ 414 (442)
+.+|+++.+++....+..+....++.||++|.|. +++|+++|.||+++++.+...+.++
T Consensus 89 ~a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~ 168 (305)
T 3t57_A 89 HAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGH 168 (305)
T ss_dssp TCEEEECCCCTTCCTTCCEEEEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT
T ss_pred ccEeCccccccceecCCCceEEECCCcccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcccCCC
Confidence 4445544444433333332211237888888886 7999999999999999999999999
Q ss_pred eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 415 DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 415 ~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++||+++|||.+++| ||++++|++||+|
T Consensus 169 v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V 201 (305)
T 3t57_A 169 VVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVV 201 (305)
T ss_dssp CEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CEECCceEEcCCCEEcCCeEECCCCEEcCCCeE
Confidence 999999999999987 9999999999875
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=144.69 Aligned_cols=149 Identities=14% Similarity=0.137 Sum_probs=115.5
Q ss_pred cccCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec------------eEE
Q 013483 294 SFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD------------TMM 357 (442)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~------------~~~ 357 (442)
..++|.+.+.+++.+++++.| +++.|. ++.||++|+|+ ++.| .+++||++|.|++++.|+. .++
T Consensus 23 ~~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~ 102 (283)
T 4eqy_A 23 SRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLV 102 (283)
T ss_dssp CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEE
T ss_pred cccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEE
Confidence 456677777777777777777 556654 68899999998 7777 4799999999999999953 677
Q ss_pred ECCccccchhhhhhhhcCC-CcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----E
Q 013483 358 LGADFYETDAEVASLLAEG-RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----I 430 (442)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i 430 (442)
+|+++.+.+....+..+.. ...+.||++|.|. ++.|+++|.||+++.+++...+.++++||+++|||.+++| |
T Consensus 103 IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~I 182 (283)
T 4eqy_A 103 IGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRI 182 (283)
T ss_dssp ECSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ECCCcccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeEE
Confidence 7877666664433322211 1127888888887 7888899999999999998888889999999999999888 8
Q ss_pred cCCcEEcCCccC
Q 013483 431 LKNSVITDGFVI 442 (442)
Q Consensus 431 ~~~~~v~~~~~i 442 (442)
|++++|++||+|
T Consensus 183 g~~~vvg~~s~V 194 (283)
T 4eqy_A 183 GAHSMLGGASAL 194 (283)
T ss_dssp CTTCEECTTCEE
T ss_pred CCCcEECCCCeE
Confidence 999999998864
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=146.08 Aligned_cols=170 Identities=18% Similarity=0.180 Sum_probs=100.0
Q ss_pred eecCChHHHHHH-hhhhhcCCCCccccCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcE
Q 013483 271 EDIGTIRSFFEA-NLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSR 345 (442)
Q Consensus 271 ~di~t~~~~~~a-n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~ 345 (442)
+-+.+|+..+.. .+.+.........+++++.+.+++.+++++.+ .++.|. ++.||++|+|+ ++.| .++.||++|.
T Consensus 74 ~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~ 153 (341)
T 3eh0_A 74 LVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSR 153 (341)
T ss_dssp EECSCHHHHHHHHHHHHCCCCCSCCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred EEeCCHHHHHHHHHHHhcccCCccCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcE
Confidence 456677764443 33333333334567777777777777777776 455554 46666666666 5555 4566666666
Q ss_pred ECCCCEEeceEEECCccccchhhhh-------------------------------------hhhcCCCcceEeCCCcEe
Q 013483 346 INANVHLKDTMMLGADFYETDAEVA-------------------------------------SLLAEGRVPVGIGENTKI 388 (442)
Q Consensus 346 i~~~~~i~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~i~~~~~i 388 (442)
|++++.|+..+.+|+++.+..-... .....+. +.||+++.|
T Consensus 154 I~~~~~I~~~~~IG~~~~I~~g~~I~~~~fg~~~~~~~~~~i~~~g~v~IGd~v~Ig~~~~I~~~~~~~--~~Ig~~~~I 231 (341)
T 3eh0_A 154 LWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDD--TIIGNGVII 231 (341)
T ss_dssp ECSSCEECTTCEECSSCEECTTCEEEECCSCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSC--EEECTTCEE
T ss_pred ECCCcEECCCCEECCccEEcCCcEECCccccccccCCccccccccCcEEECCCcEECCccEeeccccCc--eEeccceEE
Confidence 6666655554455554433321110 0000000 233333333
Q ss_pred e-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 389 K-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 389 ~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
. ++.|+++|+||+++.++....+.+..+||+++|||.+++| ||++++|+++|+|
T Consensus 232 ~~~v~I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~V 291 (341)
T 3eh0_A 232 DNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMV 291 (341)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECSSEEECTTCEE
T ss_pred CCCCEEeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEECCCCEEeeCCEE
Confidence 3 3455566666667777766777777889999999999887 8888888888764
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=140.89 Aligned_cols=147 Identities=12% Similarity=0.094 Sum_probs=108.9
Q ss_pred cCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec------------eEEEC
Q 013483 296 YDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD------------TMMLG 359 (442)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~------------~~~~~ 359 (442)
++|.+.+.+++.+++.+.+ +++.|. ++.||++|.|+ ++.| .+++||++|.|++++.|+. .+.+|
T Consensus 8 I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG 87 (262)
T 2qia_A 8 VHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIG 87 (262)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEEC
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEEC
Confidence 3444455555555555555 344443 68888888888 6777 4799999999999999964 67778
Q ss_pred CccccchhhhhhhhcCCC-cceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcC
Q 013483 360 ADFYETDAEVASLLAEGR-VPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILK 432 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~ 432 (442)
+++.+.+....+..+... .++.||++|.|+ +++|+++|.||+++++++...+.++.+|+++++||.+++| ||+
T Consensus 88 ~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v~Ig~ 167 (262)
T 2qia_A 88 DRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGA 167 (262)
T ss_dssp SSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred CCceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCCCEECC
Confidence 776665543333222111 237888888887 7888889999999999988888888999999999999887 899
Q ss_pred CcEEcCCccC
Q 013483 433 NSVITDGFVI 442 (442)
Q Consensus 433 ~~~v~~~~~i 442 (442)
+++|++||+|
T Consensus 168 ~~~ig~~s~V 177 (262)
T 2qia_A 168 HVMVGGCSGV 177 (262)
T ss_dssp TCEECSSCEE
T ss_pred CCEEccCCEE
Confidence 9999999864
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-15 Score=140.47 Aligned_cols=148 Identities=15% Similarity=0.129 Sum_probs=110.5
Q ss_pred ccCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEe------------ceEEE
Q 013483 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLK------------DTMML 358 (442)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~------------~~~~~ 358 (442)
.++|.+.+.+++.+++.+.| +.+.|. ++.||++|+|+ ++.| .+++||++|.|++++.|+ ..+++
T Consensus 9 ~I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~I 88 (265)
T 4e6u_A 9 LIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEI 88 (265)
T ss_dssp CBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEE
T ss_pred eECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEE
Confidence 34555556666666666665 445553 68888888888 6777 469999999999999994 37788
Q ss_pred CCccccchhhhhhhhcCC-CcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----Ec
Q 013483 359 GADFYETDAEVASLLAEG-RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----IL 431 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~ 431 (442)
|+++.+.+....+..+.. ...+.||++|.|. ++.|+++|+||+++.+++...+..+.+||+++|||.+++| ||
T Consensus 89 G~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig 168 (265)
T 4e6u_A 89 GNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKID 168 (265)
T ss_dssp CSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEEC
T ss_pred CCCeEECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCcEEC
Confidence 887666654433322211 1127888888887 6888888888999999888888889999999999999887 89
Q ss_pred CCcEEcCCccC
Q 013483 432 KNSVITDGFVI 442 (442)
Q Consensus 432 ~~~~v~~~~~i 442 (442)
++++|++||+|
T Consensus 169 ~~~~i~~~svV 179 (265)
T 4e6u_A 169 SYSMIGGASLI 179 (265)
T ss_dssp TTCEECTTCEE
T ss_pred CCCEEcCCCEE
Confidence 99999998874
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.1e-16 Score=139.38 Aligned_cols=180 Identities=13% Similarity=0.110 Sum_probs=110.5
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
++++.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++|+|++++... +++ . +
T Consensus 12 ~~~~~~iILA~G~g~Rmg-----~~K~ll~i~g~-pll~~~l~~l~~~-~~~i~vv~~~~~~---~~~------~-~--- 71 (201)
T 2e8b_A 12 SKVNTCYVLAGGKSKRFG-----EDKLLYEIKGK-KVIERVYETAKSV-FKEVYIVAKDREK---FSF------L-N--- 71 (201)
T ss_dssp CSCCEEEEEEESSCCCCS-----TTHHHHHHHHH-HHHHHHHHHHHTT-CSEEEEEESCSGG---GGG------G-T---
T ss_pred ccCceEEEECCCCCccCC-----CCcccceECce-EHHHHHHHHHHHh-CCEEEEEeCcHHH---hhc------C-C---
Confidence 456799999999999997 79999999999 9999999999988 9999999987653 111 1 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHH-HHHHHHHcCCcEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMD-FVQNHRQSGADITIS 162 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~-~l~~~~~~~~~~tl~ 162 (442)
+.++..... ..|++++++.+...+. .+.+++++||+ +.+.+ +.+ ++ ..++++
T Consensus 72 ----~~~v~~~~~--------~~g~~~~i~~al~~~~------~~~~lv~~~D~P~i~~~~i~~~l~------~~~~~v- 126 (201)
T 2e8b_A 72 ----APVVLDEFE--------ESASIIGLYTALKHAK------EENVFVLSGDLPLMKKETVLYVLE------NFKEPV- 126 (201)
T ss_dssp ----CCEEECCCS--------SCCHHHHHHHHHHHCS------SSEEEEEETTCTTCCHHHHHHHHH------TCCSSE-
T ss_pred ----ceEEecCCC--------CCCcHHHHHHHHHHcC------CCCEEEEeCCcCcCCHHHHHHHHh------cCCEEE-
Confidence 222221111 2599999999998875 37999999999 44444 455 44 111111
Q ss_pred EeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 013483 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (442)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~ 242 (442)
... +|+ .....|+| |+++++..+.+....
T Consensus 127 ---------------~~~-~g~----------------------------------~~p~~giy-~~~~~~~~l~~~~~~ 155 (201)
T 2e8b_A 127 ---------------SVA-KTE----------------------------------KLHTLVGV-YSKKLLEKIEERIKK 155 (201)
T ss_dssp ---------------EEE-ESS----------------------------------SEEEEEEE-EEGGGHHHHHHHHHT
T ss_pred ---------------Eec-CCc----------------------------------eeeEEEEE-eChhHHHHHHHHHHc
Confidence 000 010 12467999 999877544321111
Q ss_pred CCcccccchhhhcccccceEEEEec--ceee--ecCChHHHHHHhhhh
Q 013483 243 TANDFGSEIIPASANEQFLKAYLFN--DYWE--DIGTIRSFFEANLAL 286 (442)
Q Consensus 243 ~~~~~~~~~l~~~i~~~~i~~~~~~--g~~~--di~t~~~~~~an~~~ 286 (442)
... .+..+++...+..+.++ +.|. |+|||+||.++++.+
T Consensus 156 g~~-----~~~~~l~~~~~~~~~~~~~~~~~~~dintpedl~~~~~~~ 198 (201)
T 2e8b_A 156 GDY-----RIWALLKDVGYNEVEIPEELRYTLLNMNTKEDLKRILAIE 198 (201)
T ss_dssp TCC-----CHHHHHHHHCCEEEECCGGGGGGGCCSCCC----------
T ss_pred CCc-----hHHHHHHHCCeEEeccccccchhhcCCCCHHHHHHHHHHh
Confidence 111 22233333345566663 5789 999999999887654
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.4e-15 Score=142.99 Aligned_cols=173 Identities=18% Similarity=0.203 Sum_probs=101.6
Q ss_pred eeecCChHHHHHHhhhhhcCC-CCccccCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCc
Q 013483 270 WEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRS 344 (442)
Q Consensus 270 ~~di~t~~~~~~an~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~ 344 (442)
++-+.+|+..+.....++... .....+++.+.+.+++.+++++.| +++.|. ++.||++|+|+ ++.| .++.||++|
T Consensus 95 ~l~~~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~ 174 (372)
T 3pmo_A 95 ALVVANPYLAYASLSHLFDRKPKAAAGIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGG 174 (372)
T ss_dssp EEECSCHHHHHHHHHGGGCCCCCCCSEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred EEEECCHHHHHHHHHHHhccccccccccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCc
Confidence 445566665544333333332 234466777777777777777666 445554 56666666665 5555 356666666
Q ss_pred EECCCCEEeceEEECCccccchhhhh----------------------hhhcCC-------------CcceEeCCCcEee
Q 013483 345 RINANVHLKDTMMLGADFYETDAEVA----------------------SLLAEG-------------RVPVGIGENTKIK 389 (442)
Q Consensus 345 ~i~~~~~i~~~~~~~~~~~~~~~~~~----------------------~~~~~~-------------~~~~~i~~~~~i~ 389 (442)
.|++++.|++.+.+|+++.+..-... ...+++ ...+.||+++.|.
T Consensus 175 ~I~~~~~I~~~~~IG~~v~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~ 254 (372)
T 3pmo_A 175 WLAPRVTLYHDVTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLIGNGVKLD 254 (372)
T ss_dssp EECTTCEECTTEEECTTCEECTTCEEEECCCCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEEC
T ss_pred ccCCCcEEEeeeEECceeeccCCcEEecCcccccccCCcceeccccCCeEECCCCEECCCcEEccCcccceEECCCCEEC
Confidence 66666666666656655444321110 000000 0003333333333
Q ss_pred -eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 390 -ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 390 -~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++.|+++|+||++|.+.+...+.+..+||++++||.+++| ||++++|+++++|
T Consensus 255 ~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~V 313 (372)
T 3pmo_A 255 NQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTMV 313 (372)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECSSEEECTTCEE
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEECCCCEEeeCCEE
Confidence 3455566677777777777777778899999999999887 8888888888764
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.2e-15 Score=143.65 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=95.3
Q ss_pred eeeecCChHHHH-HHhhhhhcCCCCccccCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCC
Q 013483 269 YWEDIGTIRSFF-EANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIR 343 (442)
Q Consensus 269 ~~~di~t~~~~~-~an~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~ 343 (442)
.++-+.+|+..+ ++.+.+...... ..++|.+.+.+++.+++++.+ +++.|. ++.||++|+|+ ++.| .+++||++
T Consensus 78 ~~i~~~~p~~~~~~~~~~~~~~~~~-~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~ 156 (357)
T 4e79_A 78 NFIIVDNPYLAFAILTHVFDKKISS-TGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKD 156 (357)
T ss_dssp EEEECSCHHHHHHHHHTTSSCCCCC-CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSS
T ss_pred cEEEECCHHHHHHHHHHHhcccccc-CeeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 356677777544 333333322222 556677767666666666666 344443 45666666665 4555 35666666
Q ss_pred cEECCCCEEeceEEECCccccchhhhhhhhc------C-------CCcceEeCCCcEe----------------------
Q 013483 344 SRINANVHLKDTMMLGADFYETDAEVASLLA------E-------GRVPVGIGENTKI---------------------- 388 (442)
Q Consensus 344 ~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~-------~~~~~~i~~~~~i---------------------- 388 (442)
|.|++++.|+..+++|+++.+.+-......+ . ....+.||++|.|
T Consensus 157 ~~I~~~~~I~~~~~IG~~~~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IG~~~~I~~g~~~~t~Ig~~~~I 236 (357)
T 4e79_A 157 CFIDSYVTITGSSKLRDRVRIHSSTVIGGEGFGFAPYQGKWHRIAQLGSVLIGNDVRIGSNCSIDRGALDNTILEDGVII 236 (357)
T ss_dssp CEECTTCEECTTCEECSSCEECTTCEESCCCCCEEEETTEEEECCCCCCEEECTTCEECTTCEECCCSSSCEEECTTCEE
T ss_pred CEECCCcEEecccEEEeEeeccCCeEECcccCcccccCCceeeccccCcEEEcCCcEEccccEEeccccCCccccCCccc
Confidence 6666666555555555544433211100000 0 0001344444444
Q ss_pred e-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 389 K-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 389 ~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
. ++.|+++|+||++|.+++...+....+||++++||.+++| ||++++|++++.|
T Consensus 237 ~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~V 296 (357)
T 4e79_A 237 DNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSMV 296 (357)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSEEECTTCEE
T ss_pred CCCcccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEECCCCEEeecCEE
Confidence 2 2444555666666666666666667788888888888776 7788888877653
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-15 Score=133.78 Aligned_cols=186 Identities=14% Similarity=0.145 Sum_probs=109.5
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (442)
+|.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++||+++..+.+.+++ . .+
T Consensus 2 ~~~~iIlAgG~g~Rmg-----~~K~l~~i~g~-pll~~~l~~l~~~---~ivvv~~~~~~~~~~~~------~----~~- 61 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFG-----GDKLLAKIDNT-PIIMRTIRIYGDL---EKIIIVGKYVNEMLPLL------M----DQ- 61 (197)
T ss_dssp CEEEEEECSCCTTCCC-----SSGGGSBSSSS-BHHHHHHHHTTTS---BCCEEECTTHHHHGGGC------T----TS-
T ss_pred ceEEEEECCcCcccCC-----CCeeeCEeCce-EHHHHHHHHHHhC---CEEEEECCCHHHHHHHh------c----CC-
Confidence 4889999999999997 49999999999 9999999999887 88888887644333222 1 11
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEee
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~~ 165 (442)
+ ++.... +..|++++++.++..+.. .+.+++++||+ +++.+ +.++++.+ +.+.++++...
T Consensus 62 --~-~v~~~~--------~~~G~~~si~~al~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~- 123 (197)
T 3d5n_A 62 --I-VIYNPF--------WNEGISTSLKLGLRFFKD-----YDAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPTH- 123 (197)
T ss_dssp --C-EEECTT--------GGGCHHHHHHHHHHHTTT-----SSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEEE-
T ss_pred --E-EEECCC--------CCCCHHHHHHHHHHhhcc-----CCcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEEe-
Confidence 2 222111 125899999999988853 36899999999 55544 67777766 44444332221
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCc
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (442)
+++ .. .-.+|+++++..+. .. ....
T Consensus 124 ----------------~g~-------~~------------------------------~P~~~~~~~l~~l~-~l-~g~~ 148 (197)
T 3d5n_A 124 ----------------KGE-------RG------------------------------NPVLISKSLFNEIE-KL-RGDV 148 (197)
T ss_dssp ----------------TTE-------EC------------------------------SCEEEEHHHHHHHH-HC-CTTC
T ss_pred ----------------CCc-------cc------------------------------CCEEECHHHHHHHH-cc-CCCc
Confidence 010 00 01277888876554 32 2211
Q ss_pred ccccchhhhcccccceEEEEec--ceeeecCChHHHHHHhhhhhcC
Q 013483 246 DFGSEIIPASANEQFLKAYLFN--DYWEDIGTIRSFFEANLALTAH 289 (442)
Q Consensus 246 ~~~~~~l~~~i~~~~i~~~~~~--g~~~di~t~~~~~~an~~~l~~ 289 (442)
.. ..++... +..+..+..+ +.|.||+||+||..++..+...
T Consensus 149 ~~-~~~l~~~--~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~~~~ 191 (197)
T 3d5n_A 149 GA-RVILNKI--KIEELCFIECSEGVLIDIDKKEDLMRLRDFHPLE 191 (197)
T ss_dssp CT-HHHHTTS--CGGGEEEEECCGGGTCCTTTC-------------
T ss_pred cH-HHHHHhC--ccCeEEEEcCCCCcccCCCCHHHHHHHHHhhccc
Confidence 11 1122211 2345555553 5789999999999988766543
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-14 Score=143.47 Aligned_cols=213 Identities=16% Similarity=0.166 Sum_probs=137.7
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceee---cCccceehhhhhhhhh--------cC----CcEEEEEeccChhhHH
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCIN--------SG----INKVYILTQYNSASLN 70 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi---~g~~pli~~~l~~l~~--------~g----i~~i~iv~~~~~~~i~ 70 (442)
..+|.+||||||.||||+ .+.||+|+|| .|+ |+|++.++++.+ .| +..+++...+..+.+.
T Consensus 100 ~~kvavViLAGG~GTRLg---~~~PK~l~pv~~~~gk-~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~ 175 (505)
T 1jv1_A 100 QNKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTK 175 (505)
T ss_dssp TTCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHH
T ss_pred cCceEEEEEcCCccccCC---CCCCCccceeecCCCC-cHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHH
Confidence 367999999999999996 6899999999 789 999999999876 36 6666666667788999
Q ss_pred HHHHhhccCCCCcccCCceEEEecccc-------cCC-----cCCCccccChHHHHHHhhh--hhcCCCCCccCeEEEEc
Q 013483 71 RHLARAYNYGSGVTFGDGCVEVLAATQ-------TPG-----EAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILS 136 (442)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~v~i~~~~~-------~~~-----~~~~~~~~G~~~al~~~~~--~l~~~~~~~~~~~lv~~ 136 (442)
+++.+...|+-.. ..+.+..... ... ..-...|.|+++.+..+.. .++.+...+.++|+|.+
T Consensus 176 ~~f~~~~~fGl~~----~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n 251 (505)
T 1jv1_A 176 EFFTKHKYFGLKK----ENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYC 251 (505)
T ss_dssp HHHHHTGGGGSCG----GGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEE
T ss_pred HHHHhhhhcCCCc----CceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEE
Confidence 9997632232110 0121111000 000 0001236799999876642 11110001247999999
Q ss_pred CCee-eecCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcCCCce--EEEEeCCCcccccccccccccccccccc
Q 013483 137 GDHL-YRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV--LSFSEKPKGKDLKAMAVDTTVLGLSKQE 213 (442)
Q Consensus 137 gD~i-~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v--~~i~ek~~~~~~~~~~~~~~~~~~~~~~ 213 (442)
+|.+ +......++.+|..+++++++.+.+... ..+.+|.+..+ +|++ +.+.|+|..... . .++.
T Consensus 252 ~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~-~~e~~Gvl~~~-dg~~~vvEy~E~p~~~~~---~-------~~~~- 318 (505)
T 1jv1_A 252 VDNILVKVADPRFIGFCIQKGADCGAKVVEKTN-PTEPVGVVCRV-DGVYQVVEYSEISLATAQ---K-------RSSD- 318 (505)
T ss_dssp TTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCS-TTCSCCEEEEE-TTEEEEECGGGSCHHHHH---C-------BCTT-
T ss_pred CCccccccchHHHHHHHHHcCCCEEEEEEEccC-CccCcceEEEE-CCeEEEEEEeeCCHHHhh---h-------cccc-
Confidence 9995 7777778999999999999998876322 15788988875 4554 444444432110 0 0000
Q ss_pred cccccceeeeeEEEEeHHHHHHHHhh
Q 013483 214 AEEKPYIASMGVYLFKKEILLNLLRW 239 (442)
Q Consensus 214 ~~~~~~l~~~Giy~~~~~~l~~~l~~ 239 (442)
.....+..++++|+|+.+++.++.+.
T Consensus 319 g~~~~~~~N~~~~~f~l~~L~~i~~~ 344 (505)
T 1jv1_A 319 GRLLFNAGNIANHFFTVPFLRDVVNV 344 (505)
T ss_dssp SSBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred cccccceeeEEEEEecHHHHHHHHHh
Confidence 11123578999999999999877653
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.9e-15 Score=130.88 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=83.3
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|+++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. ++++|+|++++..+.+ .+ + +
T Consensus 4 mm~~~~iILAgG~s~Rmg----~~~K~ll~i~G~-pli~~~l~~l~~-~~~~ivvv~~~~~~~~----~~-~----~--- 65 (201)
T 1e5k_A 4 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMT-QLSHVVVNANRHQEIY----QA-S----G--- 65 (201)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHH-HCSCEEEECSSSHHHH----HT-T----S---
T ss_pred CCcceEEEEcCCCCCcCC----CCCCceeeECce-eHHHHHHHHHHh-hCCEEEEEcCCcHHHH----hh-c----C---
Confidence 557999999999999997 379999999999 999999999985 5899999998765332 11 1 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHH
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQN 151 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~ 151 (442)
+.++...... ..|++.+++.+...+. .+.+++++||+ ++..+ +.++++.
T Consensus 66 ----~~~v~~~~~~-------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 66 ----LKVIEDSLAD-------YPGPLAGMLSVMQQEA------GEWFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp ----CCEECCCTTC-------CCSHHHHHHHHHHHCC------SSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred ----CeEEecCCCC-------CCCHHHHHHHHHHhCC------CCcEEEEeCCcCcCCHHHHHHHHhh
Confidence 1222211110 1489999999998875 37899999999 56655 5677654
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-15 Score=138.84 Aligned_cols=142 Identities=20% Similarity=0.241 Sum_probs=75.8
Q ss_pred cccceEEEEecce----eeecCChHHHHHHhhhhhcCCCCc-----cccCCCCcccccCccCCCceecCCceeeeEEcCC
Q 013483 257 NEQFLKAYLFNDY----WEDIGTIRSFFEANLALTAHPPMF-----SFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 327 (442)
Q Consensus 257 ~~~~i~~~~~~g~----~~di~t~~~~~~an~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~ 327 (442)
...+++++...++ |.|+++ |+++|+.++...... ............+.+.+++.+.+ ++.||++
T Consensus 37 ~~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~I~~----~v~Ig~~ 109 (240)
T 3r8y_A 37 ETVQAFVNKKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRD----HVEIGDN 109 (240)
T ss_dssp TTSEEEECSSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBCSCBCCCTTCSSEECTTCEEBS----SCEECTT
T ss_pred CcceEEEcCCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhccchhhccCCCCEECCCCEECC----CcEECCC
Confidence 3455666665555 888887 888988876432100 00000001111223333333321 3555555
Q ss_pred CEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee---------eEeCCC
Q 013483 328 SFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE---------CIIDKN 396 (442)
Q Consensus 328 ~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~---------~~ig~~ 396 (442)
|+|+ .+.| .+++||++|.|++++.|++.+++|++ |.|+++|.+.+ ++||++
T Consensus 110 ~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~------------------~~I~~~~~i~~~~~~~~~~~~~Ig~~ 171 (240)
T 3r8y_A 110 AVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKN------------------CHVGAGAVLAGVIEPPSAKPVIVEDD 171 (240)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECTT------------------CEECTTCEECCCCSCTTSCCCEECTT
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEECCC------------------cEECCCcEECCCccCCCCCCcEECCC
Confidence 5554 4444 45666666666666666655555655 66666666654 666666
Q ss_pred cEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 397 ARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 397 ~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
|.||.++++.. ..+||+++.|++|++|
T Consensus 172 ~~IG~~~~I~~------~~~Ig~~~~I~~gsvV 198 (240)
T 3r8y_A 172 VVIGANVVVLE------GVTVGKGAVVAAGAVV 198 (240)
T ss_dssp CEECTTCEECT------TCEECTTCEECTTCEE
T ss_pred CEECCCCEECC------CcEECCCCEECCCCEE
Confidence 66666666642 3345555555555554
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=139.50 Aligned_cols=49 Identities=33% Similarity=0.451 Sum_probs=31.3
Q ss_pred EeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 381 GIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 381 ~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
.||++|.|. ++.|..+++||++|.++....+..+.+|++++.|+.++.|
T Consensus 247 ~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~V 296 (357)
T 4e79_A 247 HIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSMV 296 (357)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSEEECTTCEE
T ss_pred EECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEECCCCEEeecCEE
Confidence 333333333 3444444666777777766677777788888888887776
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.9e-13 Score=132.95 Aligned_cols=263 Identities=13% Similarity=0.113 Sum_probs=155.0
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeec-CccceehhhhhhhhhcCCc-----EEEEEe-ccChhhHHHHHH-hhcc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCINSGIN-----KVYILT-QYNSASLNRHLA-RAYN 78 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~-g~~pli~~~l~~l~~~gi~-----~i~iv~-~~~~~~i~~~~~-~~~~ 78 (442)
.++.+||||||.||||+ .+.||+|+||+ |+ |+|++.++++.+.+.. .++|.+ .+..+.+.++++ +...
T Consensus 74 ~k~avViLAGGlGTRLg---~~~PK~llpV~~gk-~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~~~ 149 (505)
T 2oeg_A 74 QSTVVLKLNGGLGTGMG---LCDAKTLLEVKDGK-TFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPW 149 (505)
T ss_dssp HTEEEEEEECCCCGGGT---CCSCGGGSEEETTE-EHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHCHH
T ss_pred hcceEEEEcCCcccccC---CCCCCcccccCCCC-cHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhhhc
Confidence 37899999999999999 77999999999 99 9999999999987633 455555 455778889987 4221
Q ss_pred CCC---Ccc-cCCceEEEecccc------cCCcCCCccccChHHHHHHh-----hhhhcCCCCCccCeEEEEcCCeeee-
Q 013483 79 YGS---GVT-FGDGCVEVLAATQ------TPGEAGKRWFQGTADAVRQF-----HWLFEDPRNKVIEDVLILSGDHLYR- 142 (442)
Q Consensus 79 ~~~---~~~-~~~~~v~i~~~~~------~~~~~~~~~~~G~~~al~~~-----~~~l~~~~~~~~~~~lv~~gD~i~~- 142 (442)
|+- ... |..+.+..+..+. ...+.-...|.|+|+++... ++.+.. .+.++++|.++|.+..
T Consensus 150 fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~---~G~e~i~V~N~DNL~~~ 226 (505)
T 2oeg_A 150 LYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVE---QGYRYMFVSNGDNLGAT 226 (505)
T ss_dssp HHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHH---TTCCEEEEECTTCTTCC
T ss_pred cCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHh---cCCCEEEEEECCccccc
Confidence 221 111 2111111111000 00000122367999998754 222211 1247999999999874
Q ss_pred cCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEc------CCCc-------eEEEEeCCCcccccccccccccccc
Q 013483 143 MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN------NEGR-------VLSFSEKPKGKDLKAMAVDTTVLGL 209 (442)
Q Consensus 143 ~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d------~~~~-------v~~i~ek~~~~~~~~~~~~~~~~~~ 209 (442)
.++ .++.+|.++++++++.+.+...+ ...+|++..+ .+|+ + .+.|....+.... + .
T Consensus 227 ~D~-~llg~~~~~~ad~~~~v~~k~~~-d~~~Gvl~~~~~~~~~~dg~~nvEyn~~-~llEyse~p~e~~---~-----~ 295 (505)
T 2oeg_A 227 IDK-RVLAYMEKEKIDFLMEVCRRTES-DKKGGHLARQTVYVKGKDGQPDAEKRVL-LLRESAQCPKADM---E-----S 295 (505)
T ss_dssp CCH-HHHHHHHHHTCSEEEEEEECCTT-CCSSEEEEEEEEEECCSSSCCCEEEEEE-EEEEGGGSCGGGH---H-----H
T ss_pred cCH-HHHHHHHhcCCcEEEEEEEecCC-ccceeEEEEecccccccCCccccccCce-eEEEeccCChhhh---h-----c
Confidence 456 88999999999999998887652 2567777662 4566 4 2444332221100 0 0
Q ss_pred cccccccccceeeeeEEEEeHHHHHHHHhhh-----CCCC------c---------ccccchhhhcccc-cceEEEEec-
Q 013483 210 SKQEAEEKPYIASMGVYLFKKEILLNLLRWR-----FPTA------N---------DFGSEIIPASANE-QFLKAYLFN- 267 (442)
Q Consensus 210 ~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~-----~~~~------~---------~~~~~~l~~~i~~-~~i~~~~~~- 267 (442)
... . ..-.+.++....|+-+.+.+.++.. .+.. . ...+.++.++++- .+..++.++
T Consensus 296 ~~g-~-~~f~~~Ninn~~~~l~~l~~~~~~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~~~~~~~~V~R 373 (505)
T 2oeg_A 296 FQD-I-NKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFESASAIVVPR 373 (505)
T ss_dssp HHC-T-TTTCEEEEEEEEEEHHHHHHHHHHTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSCTTCEEEECCG
T ss_pred ccC-c-cccCeeEEEEEEEEHHHHHHHHhhhcCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhcCcceEEEecc
Confidence 000 0 1123468899999999988877751 1110 0 0001122222221 123333332
Q ss_pred ceeeecCChHHHHHHhhhhhcC
Q 013483 268 DYWEDIGTIRSFFEANLALTAH 289 (442)
Q Consensus 268 g~~~di~t~~~~~~an~~~l~~ 289 (442)
..|.-+.+..+++.+.+++...
T Consensus 374 ~~FsPvKn~~dl~~~~sdly~~ 395 (505)
T 2oeg_A 374 SRFAPVKTCADLLALRSDAYVV 395 (505)
T ss_dssp GGCCCCSSHHHHHHHHSTTEEE
T ss_pred ceeecccCCCCHHHHHHHHHhh
Confidence 3567777888888887776543
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.7e-14 Score=131.66 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=25.4
Q ss_pred ceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 414 ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 414 ~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
..+||+++|||.+++| ||++++|++||+|
T Consensus 170 ~v~Ig~~~~IG~~~~I~~g~~IG~~~~IgagsvV 203 (273)
T 3fs8_A 170 GVTIELFAVIAARSVVLPGIHINEDALVGAGAVV 203 (273)
T ss_dssp CCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CcEECCCeEEcCCCEEcCCCEECCCCEECCCCEE
Confidence 3689999999999887 8999999999875
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.1e-14 Score=123.97 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=72.5
Q ss_pred eEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcE
Q 013483 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNAR 398 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ 398 (442)
+.|++++.|. .+.| .++.||++|.|++++.|++.+.+|++ +.|+++|.|. +++||++|.
T Consensus 16 ~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~------------------~~I~~~~~I~~~~~Ig~~~~ 77 (192)
T 3mqg_A 16 ARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNR------------------VKIQNNVSVYDNVFLEDDVF 77 (192)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSS------------------CEECTTCEECTTEEECTTCE
T ss_pred CEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCC------------------cEEcCCcEEeCCCEECCCCE
Confidence 4455555554 3334 36778888888888888777777776 7888888885 688888888
Q ss_pred ECCCeEEccCCC---------cccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 399 IGKNVIIANSEG---------IQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 399 ig~~~~~~~~~~---------~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
||+++++.+... .....+||+++|||.+++| ||++++|++||+|
T Consensus 78 ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV 135 (192)
T 3mqg_A 78 CGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVV 135 (192)
T ss_dssp ECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ECCceEEecccCCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEE
Confidence 888877765321 1134578888888888776 7888888888764
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.51 E-value=9.5e-14 Score=128.52 Aligned_cols=117 Identities=15% Similarity=0.279 Sum_probs=89.0
Q ss_pred CCCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEEe-----eeEEcCCcEECCCCEEece---------------
Q 013483 297 DATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKDT--------------- 355 (442)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~-----~~~ig~~~~i~~~~~i~~~--------------- 355 (442)
+....+.+++.+.+++.+.+ ++.||++|.|+ .+.|. +++||++|.|++++.|...
T Consensus 57 ~~~~~I~~~~~I~~~a~I~g----~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~ 132 (247)
T 1qre_A 57 PSAPVIDPTAYIDPQASVIG----EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIV 132 (247)
T ss_dssp CCCCEECTTCEECTTCEEEE----SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCE
T ss_pred CCCcEECCCcEECCCCEEeC----CcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCccccccee
Confidence 34445555566666655532 56777777777 55553 3499999999999999753
Q ss_pred --------EEECCccccchhhhhhhhcCCCcceEeCCCcEeee-eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccC
Q 013483 356 --------MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSG 426 (442)
Q Consensus 356 --------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~ 426 (442)
+++|++ +.||++|.|.+ ++||++|.||+++++.+ .+||++++||+|
T Consensus 133 ~~~~~~~~v~IG~~------------------v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-------v~Ig~~~~Igag 187 (247)
T 1qre_A 133 EVDGKEYAVYIGNN------------------VSLAHQSQVHGPAAVGDDTFIGMQAFVFK-------SKVGNNCVLEPR 187 (247)
T ss_dssp EETTEEESEEECTT------------------CEECTTCEEEEEEEECTTCEECTTCEEEE-------EEECTTCEECTT
T ss_pred eccCccCceEECCC------------------CEECCCCEEcCCcEECCCCEECCCCEEec-------eEECCCCEECCC
Confidence 677776 88999999986 99999999999999863 678888888888
Q ss_pred cEE----EcCCcEEcCCccC
Q 013483 427 VTV----ILKNSVITDGFVI 442 (442)
Q Consensus 427 ~~v----i~~~~~v~~~~~i 442 (442)
++| |+++++|++|++|
T Consensus 188 svV~~~~I~~~~~v~~g~vv 207 (247)
T 1qre_A 188 SAAIGVTIPDGRYIPAGMVV 207 (247)
T ss_dssp CEEESCEECTTBEECTTCEE
T ss_pred CEECCeEeCCCCEECCCCEE
Confidence 777 7888888888753
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-14 Score=138.37 Aligned_cols=196 Identities=14% Similarity=0.141 Sum_probs=124.5
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhh-cCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~-~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
+++.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+ .++++|+|+++ ..+.+.+++ .+
T Consensus 2 mki~aIILAaG~ssRmg---~~~pK~ll~l~Gk-PLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~~~~-------~~--- 66 (371)
T 1w55_A 2 SEMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NITYMKKFT-------KN--- 66 (371)
T ss_dssp CCEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTC-------SS---
T ss_pred CccEEEEECCCCCccCC---CCCCcceEEECCe-EHHHHHHHHHHccCCCCeEEEEcC-CHHHHHHHh-------CC---
Confidence 46899999999999998 4579999999999 999999999998 58999999998 433332221 11
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeec-CHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~~~~~~~~~tl~~ 163 (442)
+.++. .. .|..++++.++..+. .+.+++++||. +++. .+.++++.+.+. +.++.+
T Consensus 67 ----v~~v~--~g---------~g~~~sv~~aL~~l~------~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~a~i~~ 123 (371)
T 1w55_A 67 ----YEFIE--GG---------DTRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPA 123 (371)
T ss_dssp ----SEEEE--CC---------SSHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEE
T ss_pred ----CEEEe--CC---------CChHHHHHHHHHhcC------CCeEEEEeCCcccCCHHHHHHHHHHHHhc--CCEEEE
Confidence 22221 11 368899999887775 37899999999 4444 478888877654 334444
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceee-eeEEEEeHHHHHHHHhhhCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIAS-MGVYLFKKEILLNLLRWRFP 242 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Giy~~~~~~l~~~l~~~~~ 242 (442)
.+..+. +.. + .+.+... .+.. ..-+.|+.+.+..+++...
T Consensus 124 ~~~~d~-------vk~-----v---~~t~~r~-----------------------~l~~~~~P~~f~~~~l~~~~~~~~- 164 (371)
T 1w55_A 124 LKVADT-------TLF-----D---NEALQRE-----------------------KIKLIQTPQISKTKLLKKALDQNL- 164 (371)
T ss_dssp ECCCSC-------EEE-----T---TEEECGG-----------------------GCCEECSCEEEEHHHHHHHTSSCC-
T ss_pred EEeecC-------eee-----e---eeecCcc-----------------------ceeecCCcceecHHHHHHHHHhcc-
Confidence 443321 000 0 0001100 1111 1235688887766554311
Q ss_pred CCcccccchhhhcc-cccceEEEEecceeeecCChHHHHHHh
Q 013483 243 TANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEAN 283 (442)
Q Consensus 243 ~~~~~~~~~l~~~i-~~~~i~~~~~~g~~~di~t~~~~~~an 283 (442)
. + .+....+. .+.++..++.++.|.||+||+||..|+
T Consensus 165 --~-~-td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae 202 (371)
T 1w55_A 165 --E-F-TDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD 202 (371)
T ss_dssp --C-C-SSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred --c-c-cCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH
Confidence 0 1 11111111 135677777778899999999999887
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-13 Score=123.14 Aligned_cols=115 Identities=17% Similarity=0.255 Sum_probs=82.9
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++||+++ .+.+. .+.+.+ +
T Consensus 1 m~aiILAgG~s~Rmg-----~~K~ll~~~G~-pli~~~~~~l~~~---~vvvv~~~-~~~~~-~~~~~~--------~-- 59 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGK-KLIEWVLEKYSPF---QTVFVCRD-EKQAE-KLSSRY--------E-- 59 (208)
T ss_dssp CEEEEECCCCCTTTT-----SCGGGCEETTE-EHHHHHHHHHTTS---EEEEECSS-HHHHH-HHHTTS--------C--
T ss_pred CEEEEECCCchhhCC-----CCCcccEECCe-eHHHHHHHHhcCC---CEEEEECC-HHHHH-HHHHhc--------C--
Confidence 689999999999997 79999999999 9999999999987 88888863 23332 332211 1
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEE
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl 161 (442)
+.++..... -.|...+++.++..+ . +.+ +++||+ +++.+ +.++++.+.+.+.++++
T Consensus 60 -~~~v~d~~~--------~~G~~~si~~gl~~~-~------~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~ 117 (208)
T 3ngw_A 60 -AEFIWDLHK--------GVGSIAGIHAALRHF-G------SCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208)
T ss_dssp -SCEECCTTC--------CCSHHHHHHHHHHHH-S------SEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred -CeEEecCCC--------CCChHHHHHHHHHHc-C------CCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEE
Confidence 122222211 147889999998877 3 688 999999 55555 67888877655555443
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=138.55 Aligned_cols=100 Identities=14% Similarity=0.219 Sum_probs=80.1
Q ss_pred eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEE
Q 013483 321 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARI 399 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~i 399 (442)
++.||++|.|+ .+.|.+++||++|.|+++|.|.++++..+ |.|++++.|.+++||++|.|
T Consensus 291 ~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~-------------------~~Ig~~a~I~gv~IGd~v~I 351 (496)
T 3c8v_A 291 DTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERN-------------------CVTAHGGKIINAHLGDMIFT 351 (496)
T ss_dssp SCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEES-------------------CEECTTCEEESEEEEETCEE
T ss_pred CeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCC-------------------CEECCCcEEcCceECCCcEE
Confidence 67888888888 67778899999999999999997665444 89999999999999999999
Q ss_pred CCCeEEccCCCcccceeeCCCeEEccCcEEE-cCCcEEcCCcc
Q 013483 400 GKNVIIANSEGIQEADRSAEGFYIRSGVTVI-LKNSVITDGFV 441 (442)
Q Consensus 400 g~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi-~~~~~v~~~~~ 441 (442)
|+++++.... ...++||+++.||.|+.|. .+++.|+++++
T Consensus 352 G~~a~I~~~~--~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~ 392 (496)
T 3c8v_A 352 GFNSFLQGSE--SSPLKIGDGCVVMPHTIIDLEEPLEIPAGHL 392 (496)
T ss_dssp CTTCEEECCS--SSCEEECTTCEECTTCEEECSSCEEECSSEE
T ss_pred CCCCEEeCCC--CcceEECCCCEECCCCEEecCCCcEeCCCCE
Confidence 9999998642 1246888888888886663 25566666654
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.45 E-value=8e-13 Score=115.45 Aligned_cols=111 Identities=20% Similarity=0.264 Sum_probs=85.5
Q ss_pred CCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEEe----eeEEcCCcEECCCCEEec----eEEECCccccchhh
Q 013483 298 ATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD----TMMLGADFYETDAE 368 (442)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~ 368 (442)
..+.+.+++.+.+++.+.+ ++.||++|.|+ .+.+. .++||++|.|++++.|.. .+++|++
T Consensus 9 ~~~~i~~~~~I~~~a~i~g----~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------- 77 (173)
T 1v3w_A 9 KKPRIHPSAFVDENAVVIG----DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEY------- 77 (173)
T ss_dssp BCCEECTTCEECTTSEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSS-------
T ss_pred CCCEECCCCEECCCCEEeC----CEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCC-------
Confidence 3345555666666665533 57788888887 56663 389999999999999985 3788887
Q ss_pred hhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEE
Q 013483 369 VASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVI 436 (442)
Q Consensus 369 ~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v 436 (442)
+.|+++|.|.+++||++|.||+++++.+ ..+||++++||++++| |++++++
T Consensus 78 -----------~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~------~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v 133 (173)
T 1v3w_A 78 -----------VTIGHNAMVHGAKVGNYVIIGISSVILD------GAKIGDHVIIGAGAVVPPNKEIPDYSLV 133 (173)
T ss_dssp -----------CEECTTCEEESCEECSSEEECTTCEECT------TCEECSSEEECTTCEECTTCEECTTEEE
T ss_pred -----------CEECCCCEECCCEECCCCEECCCCEEeC------CCEECCCCEECCCCEECCCcEeCCCcEE
Confidence 8999999999999999999999999875 4678888888888665 4555555
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.45 E-value=8e-13 Score=117.18 Aligned_cols=114 Identities=22% Similarity=0.333 Sum_probs=86.8
Q ss_pred CCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEE----eeeEEcCCcEECCCCEEec-----------eEEECCcc
Q 013483 299 TKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI----EHSVVGIRSRINANVHLKD-----------TMMLGADF 362 (442)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i----~~~~ig~~~~i~~~~~i~~-----------~~~~~~~~ 362 (442)
.+.+..++.+.+++.+.+ ++.||++|.|+ .+.| ..++||++|.|++++.|.. .+++|++
T Consensus 19 ~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~- 93 (189)
T 3r1w_A 19 SPKLGERVFVDRSSVIIG----DVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDD- 93 (189)
T ss_dssp CCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSS-
T ss_pred CCEECCCcEECCCCEEee----eeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCC-
Confidence 345555666666666533 57778888887 6666 2459999999999999977 5677876
Q ss_pred ccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCcc
Q 013483 363 YETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 441 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~ 441 (442)
+.|+++|.|.+++||++|.||+++++.. ..+|+++++||++++| .++..|+++++
T Consensus 94 -----------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~------~v~Ig~~~~Ig~~s~V-~~g~~i~~~~v 148 (189)
T 3r1w_A 94 -----------------VTIGHQAMLHGCTIGNRVLIGMKSMIMD------GAIVEDEVIVAAGATV-SPGKVLESGFV 148 (189)
T ss_dssp -----------------EEECTTCEEESCEECSSEEECTTCEECT------TCEECSSCEECTTCEE-CTTCEECTTEE
T ss_pred -----------------CEECCCCEEeCcEECCCcEECCCCEEcC------CCEECCCCEEccCCEE-CCCCEeCCCCE
Confidence 9999999999999999999999999974 5678888888888655 45555555554
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.2e-13 Score=118.41 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=74.2
Q ss_pred cCccCCCcee-cCCcee-eeEEcCCCEEe-ceEEe----eeEEcCCcEECCCCEEece----------------EEECCc
Q 013483 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT----------------MMLGAD 361 (442)
Q Consensus 305 ~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~~----------------~~~~~~ 361 (442)
+++|++.+++ +++.|. ++.||++|+|+ ++.|. +++||++|.|++++.|.+. +++|++
T Consensus 12 ~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~ 91 (194)
T 3tv0_A 12 SVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTN 91 (194)
T ss_dssp CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEECSS
T ss_pred CCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEECCc
Confidence 4444455544 344443 68888888888 66662 4789999999999999653 334443
Q ss_pred cccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 362 FYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
+.|++++.+.++.||++|.||++++|.. .++||+++.||+|++| .+++.|++++
T Consensus 92 ------------------~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~------gv~IG~~~~IgagsvV-~~~~~Ip~~s 145 (194)
T 3tv0_A 92 ------------------NVFEVGCYSQAMKMGDNNVIESKAYVGR------NVILTSGCIIGACCNL-NTFEVIPENT 145 (194)
T ss_dssp ------------------CEECTTCEECCSEECSSCEECTTCEECT------TEEECSSCEECTTCEE-CCCEEECTTE
T ss_pred ------------------ceEecceeEeeeeecccceecceeeECC------eEEECCCCEECCCCEE-CCCcEECCCC
Confidence 5666666667777778888887777764 5678888888888665 3344444443
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.44 E-value=9.9e-13 Score=116.38 Aligned_cols=116 Identities=18% Similarity=0.278 Sum_probs=88.1
Q ss_pred CCCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEEe----eeEEcCCcEECCCCEE-----------eceEEECC
Q 013483 297 DATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHL-----------KDTMMLGA 360 (442)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i-----------~~~~~~~~ 360 (442)
...+.+..++.+.+++.+.+ ++.||++|.|+ .+.|. .++||++|.|++++.| ...+++|+
T Consensus 13 ~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~ 88 (187)
T 3r3r_A 13 NLFPGIGQRVMIDTSSVVIG----DVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGE 88 (187)
T ss_dssp TBCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECS
T ss_pred ccCcccCCCeEECCCCEEEC----ceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECC
Confidence 33455556666666666633 57788888887 66663 3599999999999999 46677887
Q ss_pred ccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 361 DFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
+ +.|+++|.|.+++||++|.||+++++.. ..+|+++++||++++| .++..|++++
T Consensus 89 ~------------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~------~~~Ig~~~~Ig~~s~V-~~~~~i~~~~ 143 (187)
T 3r3r_A 89 D------------------VTVGHKVMLHGCTIGNRVLVGMGSIVLD------GAIIEDDVMIGAGSLV-PQHKRLESGY 143 (187)
T ss_dssp S------------------CEECTTCEEESCEECSSEEECTTCEECT------TCEECSSEEECTTCEE-CTTCEECTTE
T ss_pred C------------------CEECCCCEEeCcEECCCCEECCCCEECC------CCEECCCCEECCCCEE-CCCcCcCCCc
Confidence 7 8999999999999999999999999964 5678888888888655 4555555555
Q ss_pred c
Q 013483 441 V 441 (442)
Q Consensus 441 ~ 441 (442)
+
T Consensus 144 v 144 (187)
T 3r3r_A 144 L 144 (187)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.3e-13 Score=116.94 Aligned_cols=118 Identities=18% Similarity=0.304 Sum_probs=86.9
Q ss_pred ccCCCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEEe----eeEEcCCcEECCCCEEec-----eEEECCcccc
Q 013483 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD-----TMMLGADFYE 364 (442)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~-----~~~~~~~~~~ 364 (442)
+.++...+..++.+.+++.+.+ ++.||++|.|+ .+.|. .++||++|.|++++.|.. .+++|++
T Consensus 29 ~~~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~--- 101 (191)
T 3ixc_A 29 YAGVSPSVDSTAFIAGNARIIG----DVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKF--- 101 (191)
T ss_dssp BTTBCCEECTTSEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTT---
T ss_pred ccCCCCEECCCCEECCCCEEeC----CcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCC---
Confidence 3444455555566666555532 56777777777 56663 459999999999999974 5677776
Q ss_pred chhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCcc
Q 013483 365 TDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 441 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~ 441 (442)
|.||++|.|.+++||++|.||+++++.+ ..+|+++++|+++++| .++..|+++++
T Consensus 102 ---------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~------~~~Ig~~~~Ig~gsvV-~~~~~i~~~~~ 156 (191)
T 3ixc_A 102 ---------------VTIGHSCILHACTLGNNAFVGMGSIVMD------RAVMEEGSMLAAGSLL-TRGKIVKSGEL 156 (191)
T ss_dssp ---------------CEECTTCEECSCEECTTCEECTTCEECT------TCEECTTCEECTTCEE-CTTCEECTTEE
T ss_pred ---------------CEECCCCEEECCEECCCCEECCCCEEeC------CeEECCCCEECCCCEE-CCCcCcCCCeE
Confidence 8999999999999999999999999975 4577888888888554 56666666654
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=113.64 Aligned_cols=113 Identities=25% Similarity=0.350 Sum_probs=83.9
Q ss_pred CCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEEee----eEEcCCcEECCCCEEec----eEEECCccccchhh
Q 013483 298 ATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLKD----TMMLGADFYETDAE 368 (442)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~~----~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~ 368 (442)
+...+.+++.+.+++.+. .++.||++|.|+ .+.+.. ++||++|.|++++.|.. .+++|++
T Consensus 11 ~~~~ig~~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~------- 79 (173)
T 1xhd_A 11 KKPKIASSAFIADYVTIT----GDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDD------- 79 (173)
T ss_dssp BCCEECTTCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTT-------
T ss_pred CCCEECCCcEECCCCEEE----CCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCC-------
Confidence 334455555555555543 267888888888 666633 89999999999999983 5677776
Q ss_pred hhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCC
Q 013483 369 VASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDG 439 (442)
Q Consensus 369 ~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~ 439 (442)
+.|++++.|.+++||++|.||+++++.. ..+||++++|+++++| .++..|+++
T Consensus 80 -----------~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~------~~~Ig~~~~Ig~~s~V-~~~~~i~~~ 132 (173)
T 1xhd_A 80 -----------VTVGHQVILHSCHIKKDALIGMGSIILD------GAEIGEGAFIGAGSLV-SQGKKIPPN 132 (173)
T ss_dssp -----------CEECTTCEEESCEECTTCEECTTCEECT------TCEECTTCEECTTCEE-CTTCEECTT
T ss_pred -----------CEECCCCEEeCCEECCCCEEcCCCEEcC------CCEECCCCEECCCCEE-CCCcEeCCC
Confidence 8999999999999999999999999874 5678888888888665 333344443
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.2e-13 Score=124.20 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=37.7
Q ss_pred cCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEEe-e--------------eEEcCCcEECCCCEEeceEE
Q 013483 296 YDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-H--------------SVVGIRSRINANVHLKDTMM 357 (442)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~-~--------------~~ig~~~~i~~~~~i~~~~~ 357 (442)
+++.+.+.+++.+++++.| +++.|. ++.||++|+|+ .+.|. . ++||++|.|++++.|...+.
T Consensus 11 I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~ 90 (273)
T 3fs8_A 11 IKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDTI 90 (273)
T ss_dssp ECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESSCE
T ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCCCE
Confidence 3444444445555555555 344442 46666666666 45552 2 67777777777777766556
Q ss_pred ECCc
Q 013483 358 LGAD 361 (442)
Q Consensus 358 ~~~~ 361 (442)
+|++
T Consensus 91 Ig~~ 94 (273)
T 3fs8_A 91 IGDN 94 (273)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 6654
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=117.87 Aligned_cols=88 Identities=14% Similarity=0.063 Sum_probs=55.2
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEe----eeeEeCCCcEECCCeEEccCC---
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKI----KECIIDKNARIGKNVIIANSE--- 409 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i----~~~~ig~~~~ig~~~~~~~~~--- 409 (442)
++.||++|.|++++.|...+.+|++ |.|+++|.| .+++||++|.|++++++.+..
T Consensus 52 ~v~IG~~~~I~~~~~I~~~v~IG~~------------------~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~ 113 (205)
T 3vbi_A 52 VISIGNNVRIDDFCILSGKVTIGSY------------------SHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDF 113 (205)
T ss_dssp GEEECSSEEECTTCEEEEEEEECSS------------------EEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCC
T ss_pred eeEECCCCEECCCCEEccceEECCC------------------CEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCc
Confidence 4677777777777777766777765 677777777 236777777777777763110
Q ss_pred ----------------CcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 410 ----------------GIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 410 ----------------~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
......+||++++||++++| ||++++||+||+|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV 167 (205)
T 3vbi_A 114 SGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMV 167 (205)
T ss_dssp SSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEE
T ss_pred ccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEE
Confidence 01234466666666666665 6666666666653
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-12 Score=126.52 Aligned_cols=58 Identities=17% Similarity=0.258 Sum_probs=26.3
Q ss_pred cccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEE
Q 013483 301 PIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMML 358 (442)
Q Consensus 301 ~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~ 358 (442)
.+.+.+.+.+.+.+ +++.|. +++|++++.|+ .+.| .+++||+++.|++++.|+.++.+
T Consensus 126 ~i~~~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I 187 (374)
T 2iu8_A 126 GIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVI 187 (374)
T ss_dssp SBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ccCCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEE
Confidence 34444555555544 333332 34444444444 3344 23444444555555555433333
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.6e-13 Score=127.87 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=12.6
Q ss_pred ECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 399 IGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 399 ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
||++|.++....+.++.+|++++.|+.+++|
T Consensus 261 IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~V 291 (341)
T 3eh0_A 261 IGRYCMIGGASVINGHMEICDKVTVTGMGMV 291 (341)
T ss_dssp ECTTCEECTTCEECSSEEECSSEEECTTCEE
T ss_pred ECCCcEEcCCCEECCCCEECCCCEEeeCCEE
Confidence 3333333333333344444444444444333
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=123.02 Aligned_cols=135 Identities=13% Similarity=0.151 Sum_probs=66.0
Q ss_pred CcccccCccCCCceecCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhh------hhh
Q 013483 300 KPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA------SLL 373 (442)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~------~~~ 373 (442)
..+++++.+.+++.+.. ++.|+++|+|+. ++.||++|.|++++.|...+.+|+++.+.+.... ..+
T Consensus 23 ~~I~p~a~I~~~a~ig~----~v~Ig~~~~I~~----~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~ 94 (283)
T 4eqy_A 23 SRIHPTAIIEPGAQLHE----TVEVGPYAIVGS----NVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKY 94 (283)
T ss_dssp CCBCTTCEECTTCEECT----TCEECTTCEECT----TEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTC
T ss_pred cccCCCCEECCCCEECC----CCEECCCCEECC----CCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccc
Confidence 34444444444444411 344444444442 5666666666666666666666665333221110 000
Q ss_pred cCCCcceEeCCCcEee-eeEeCCC-------cEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCc
Q 013483 374 AEGRVPVGIGENTKIK-ECIIDKN-------ARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGF 440 (442)
Q Consensus 374 ~~~~~~~~i~~~~~i~-~~~ig~~-------~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~ 440 (442)
......+.||++|.|+ +|.|..+ +.||+++.++....+...++||++++|+.++.+ ||++++||+++
T Consensus 95 ~g~~~~v~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a 174 (283)
T 4eqy_A 95 KDEPTRLVIGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMS 174 (283)
T ss_dssp CCCCCEEEECSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTC
T ss_pred cCCCceEEECCCcccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCC
Confidence 0000114455555543 2333221 333333333333333345567777777776665 78888888887
Q ss_pred cC
Q 013483 441 VI 442 (442)
Q Consensus 441 ~i 442 (442)
+|
T Consensus 175 ~V 176 (283)
T 4eqy_A 175 GV 176 (283)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-12 Score=115.91 Aligned_cols=97 Identities=23% Similarity=0.309 Sum_probs=78.0
Q ss_pred eeEEcCCCEEe-ceEEe-----eeEEcCCcEECCCCEEec--------------eEEECCccccchhhhhhhhcCCCcce
Q 013483 321 DSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKD--------------TMMLGADFYETDAEVASLLAEGRVPV 380 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i~-----~~~ig~~~~i~~~~~i~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (442)
++.||++|.|+ .+.|. .++||++|.|++++.|.. .+.+|++ +
T Consensus 57 ~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~------------------v 118 (213)
T 3kwd_A 57 DVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDN------------------V 118 (213)
T ss_dssp SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTT------------------C
T ss_pred ceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCC------------------c
Confidence 56777888877 66662 479999999999999975 3666766 8
Q ss_pred EeCCCcEeee-eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE----EcCCcEEcCCccC
Q 013483 381 GIGENTKIKE-CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV----ILKNSVITDGFVI 442 (442)
Q Consensus 381 ~i~~~~~i~~-~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v----i~~~~~v~~~~~i 442 (442)
.|+++|.|.. ++||++|.||+++++. + .+||++++||++++| |++++.|++|+++
T Consensus 119 ~Ig~~~~I~~~v~Ig~~v~IG~~a~I~------~-~~Ig~~~~Igags~V~~~~i~~~~~v~~~~vv 178 (213)
T 3kwd_A 119 SITHMALIHGPAYIGDGCFIGFRSTVF------N-ARVGAGCVVMMHVLIQDVEIPPGKYVPSGMVI 178 (213)
T ss_dssp EECTTCEEEEEEEECTTCEECTTCEEE------E-EEECTTCEECSSCEEESCEECTTBEECTTCEE
T ss_pred EECCCcEEcCCCEECCCCEECCCCEEe------C-cEECCCCEEcCCCEECCcEeCCCCEECCCcEE
Confidence 8888888875 9999999999999986 2 678888888888877 7888888888764
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-12 Score=129.89 Aligned_cols=218 Identities=16% Similarity=0.193 Sum_probs=136.0
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeec---Cccceehhhhhhhhhc--------C------CcEEEEEeccChhhH
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS--------G------INKVYILTQYNSASL 69 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~---g~~pli~~~l~~l~~~--------g------i~~i~iv~~~~~~~i 69 (442)
.++.+|+||||.||||. .+.||+|+||+ |+ |+|++.++++.+. | +..+++...+..+.+
T Consensus 102 gkvavvlLaGG~GTRLg---~~~PK~l~~v~l~~gk-~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t 177 (486)
T 2yqc_A 102 GEVAVLLMAGGQGTRLG---SSAPKGCFNIELPSQK-SLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNAT 177 (486)
T ss_dssp TCEEEEEEEESBCGGGT---CSSBGGGCBCCCTTCC-BHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHH
T ss_pred CCeEEEEEcCCccccCC---CCCCCccceecCCCCC-cHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHH
Confidence 47999999999999995 78999999999 99 9999999999886 6 778878888888889
Q ss_pred HHHHHhhccCCCCcc----cCCceEEEecccccC-----CcCCCccccChHHHHHHhhh--hhcCCCCCccCeEEEEcCC
Q 013483 70 NRHLARAYNYGSGVT----FGDGCVEVLAATQTP-----GEAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGD 138 (442)
Q Consensus 70 ~~~~~~~~~~~~~~~----~~~~~v~i~~~~~~~-----~~~~~~~~~G~~~al~~~~~--~l~~~~~~~~~~~lv~~gD 138 (442)
.+++++.-.|+-... |....+..+..+... ...-...|.|+|+.+..... .++++...+.+++.+.+.|
T Consensus 178 ~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vD 257 (486)
T 2yqc_A 178 ESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVD 257 (486)
T ss_dssp HHHHHHTGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETT
T ss_pred HHHHhhccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCC
Confidence 999976422321111 011111111110000 00001136788888765532 1221111234688888889
Q ss_pred eeee-cCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcC-CC--ceEEEEeCCCccccccccccccccccccc-c
Q 013483 139 HLYR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN-EG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQ-E 213 (442)
Q Consensus 139 ~i~~-~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~-~~--~v~~i~ek~~~~~~~~~~~~~~~~~~~~~-~ 213 (442)
.+.. ..-..++..|..+++++++.+.+...+ ....|.+...+ +| +|+.+.|+|....... ++. .
T Consensus 258 N~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~-~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~~----------~~~~~ 326 (486)
T 2yqc_A 258 NCLVKVADPIFIGFAIAKKFDLATKVVRKRDA-NESVGLIVLDQDNQKPCVIEYSEISQELANKK----------DPQDS 326 (486)
T ss_dssp BTTCCTTCHHHHHHHHHHTCSEEEEEEECCST-TCCCCEEEEETTTTEEEEECGGGSCHHHHHCE----------ETTEE
T ss_pred CceeeccCHHHHHHHHHcCCCEEEEEEEcCCC-CCceeEEEEEecCCCEEEEEEecCCHHHhhcc----------ccccc
Confidence 8444 222367888999999999988776432 35678877532 45 4666666664321100 000 0
Q ss_pred cccccceeeeeEEEEeHHHHHHHHhh
Q 013483 214 AEEKPYIASMGVYLFKKEILLNLLRW 239 (442)
Q Consensus 214 ~~~~~~l~~~Giy~~~~~~l~~~l~~ 239 (442)
.....+..+++.|+|+.+++.+.+++
T Consensus 327 ~~~~~~~~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 327 SKLFLRAANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp EEESSCEEEEEEEEEEHHHHHHHHHH
T ss_pred ccccccceeEEEEEEeHHHHHHHHHh
Confidence 00123577999999999999874544
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=114.52 Aligned_cols=119 Identities=20% Similarity=0.302 Sum_probs=85.9
Q ss_pred ccCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhh
Q 013483 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA 370 (442)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 370 (442)
.++|.+.+.+++.+++++.+ +++.+. ++.||++|.|+ .+.| .+++||++|.|++++.|.+++.++++
T Consensus 5 ~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~--------- 75 (192)
T 3mqg_A 5 TIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDD--------- 75 (192)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTT---------
T ss_pred EECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCC---------
Confidence 34566666666667766666 444443 57888888887 6666 45888888888888888877777776
Q ss_pred hhhcCCCcceEeCCCcEe----------------eeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---Ec
Q 013483 371 SLLAEGRVPVGIGENTKI----------------KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---IL 431 (442)
Q Consensus 371 ~~~~~~~~~~~i~~~~~i----------------~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~ 431 (442)
+.||+++.+ ..++||++|.||.++++.. ..+||+++.|+++++| +.
T Consensus 76 ---------~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~------g~~Ig~~~~IgagsvV~~~vp 140 (192)
T 3mqg_A 76 ---------VFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVC------GATIGRYAFVGAGAVVNKDVP 140 (192)
T ss_dssp ---------CEECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECT------TCEECTTCEECTTCEECSCBC
T ss_pred ---------CEECCceEEecccCCccccccccccCCcEECCCcEECCCCEECC------CCEECCCCEEcCCCEECcccC
Confidence 677776666 4588888999998888874 4578888888888777 55
Q ss_pred CCcEEc
Q 013483 432 KNSVIT 437 (442)
Q Consensus 432 ~~~~v~ 437 (442)
+++++.
T Consensus 141 ~~~v~~ 146 (192)
T 3mqg_A 141 DFALVV 146 (192)
T ss_dssp TTEEEE
T ss_pred CCCEEE
Confidence 555544
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=119.55 Aligned_cols=104 Identities=17% Similarity=0.269 Sum_probs=81.0
Q ss_pred eeEEcCCCEEe-ceEE-----eeeEEcCCcEECCCCEEec--eEEECCccccchhhhhhhhcCCCcceEeCCCcEee---
Q 013483 321 DSIISHGSFIT-SSFI-----EHSVVGIRSRINANVHLKD--TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK--- 389 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-----~~~~ig~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~--- 389 (442)
+++|++++.+. .+.+ ..+.||++|.|++++.|.. .+.+|++ +.|+++|+|.
T Consensus 63 ~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~~v~IG~~------------------~~Ig~~~~I~~~~ 124 (252)
T 3jqy_B 63 KLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGSKVIIGRR------------------TTIGAGFEVVTDK 124 (252)
T ss_dssp EEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSCEEEECTT------------------CEECTTCEEECSS
T ss_pred EEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCCEEEECCC------------------CEECCCcEEEeCC
Confidence 57888888877 4444 3467888888888888843 6777876 8899999887
Q ss_pred -eeEeCCCcEECCCeEEccCC-------------CcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 390 -ECIIDKNARIGKNVIIANSE-------------GIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 390 -~~~ig~~~~ig~~~~~~~~~-------------~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++.||++|.||++|++.+.. ...+..+||+++|||++++| ||++++||+||+|
T Consensus 125 ~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV 196 (252)
T 3jqy_B 125 CNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIV 196 (252)
T ss_dssp SEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEE
T ss_pred CCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEE
Confidence 89999999999999998763 23344688888999888776 8888888888864
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.2e-12 Score=113.44 Aligned_cols=96 Identities=20% Similarity=0.358 Sum_probs=76.2
Q ss_pred eEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCCCcceEeCCCcEee------e
Q 013483 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK------E 390 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~------~ 390 (442)
..|++++.|. .+.+ .++.||++|.|++++.|..+ +.+|++ +.|+++|.|. +
T Consensus 34 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~g~ 95 (191)
T 3ixc_A 34 PSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEG------------------TNIQDNTVVHTDSMHGD 95 (191)
T ss_dssp CEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEECC----CC
T ss_pred CEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCC------------------CEECCCCEEeecCCcCC
Confidence 4556666666 4455 57899999999999999854 488887 8999999997 8
Q ss_pred eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 391 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 391 ~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++||++|.||+++++.+ .+||++++||+++.| ||++++|++|++|
T Consensus 96 ~~Ig~~~~Ig~~~~i~~-------~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV 145 (191)
T 3ixc_A 96 TVIGKFVTIGHSCILHA-------CTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLL 145 (191)
T ss_dssp EEECTTCEECTTCEECS-------CEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred eEECCCCEECCCCEEEC-------CEECCCCEECCCCEEeCCeEECCCCEECCCCEE
Confidence 99999999999998864 467777777777665 7888888888764
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-12 Score=119.06 Aligned_cols=135 Identities=16% Similarity=0.174 Sum_probs=63.6
Q ss_pred ccCccCCCceec-CCcee-eeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhh------hhhcC
Q 013483 304 TSRRNLPPSKID-DSKIV-DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA------SLLAE 375 (442)
Q Consensus 304 ~~~~~~~~~~i~-~~~i~-~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~ 375 (442)
..+.|.|.+.+. ++.|. ++.|+++|+|+ .++.||++|.|++++.|.+.+.+|+++.+.+.... ..+..
T Consensus 6 ~~~~I~p~a~i~~~a~Ig~~v~Ig~~~~I~----~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g 81 (265)
T 4e6u_A 6 NHDLIHSTAIIDPSAVIASDVQIGPYCIIG----PQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKG 81 (265)
T ss_dssp --CCBCTTCEECTTCEECTTCEECTTCEEC----TTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCS
T ss_pred CCCeECCCCEECCCCEECCCCEECCCeEEC----CCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccC
Confidence 344455555552 22221 34444444444 25666666666666666666666655333221100 00000
Q ss_pred CCcceEeCCCcEee-eeEeCC-------CcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 376 GRVPVGIGENTKIK-ECIIDK-------NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 376 ~~~~~~i~~~~~i~-~~~ig~-------~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
....+.||++|.|+ +|.|.. ++.||+++.+.....+...++|+++++|+.++.+ ||++++||++++|
T Consensus 82 ~~~~~~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V 161 (265)
T 4e6u_A 82 EETWLEIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGI 161 (265)
T ss_dssp CCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred CCCeEEECCCeEECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEE
Confidence 00114555555543 233321 1333333333333333345567777777776654 7888888888764
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.9e-12 Score=110.39 Aligned_cols=96 Identities=21% Similarity=0.348 Sum_probs=77.2
Q ss_pred eEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCCCcceEeCCCcEee-----ee
Q 013483 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----EC 391 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-----~~ 391 (442)
..|++++.|. .+.+ .++.||++|.|++++.|... +.+|++ +.|+++|.|. ++
T Consensus 13 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~------------------~~I~~~~~I~~~~~~~~ 74 (173)
T 1xhd_A 13 PKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDR------------------VNVQDQCTLHQSPQYPL 74 (173)
T ss_dssp CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECCTTCCE
T ss_pred CEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCC------------------CEECCCCEEEeCCCCCe
Confidence 3455555555 4444 57999999999999999875 788887 8999999997 89
Q ss_pred EeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 392 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 392 ~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+||++|.|+.++.+.+ .+|++++|||.++.| ||++++|++|++|
T Consensus 75 ~Ig~~~~Ig~~~~i~~-------~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V 123 (173)
T 1xhd_A 75 ILEDDVTVGHQVILHS-------CHIKKDALIGMGSIILDGAEIGEGAFIGAGSLV 123 (173)
T ss_dssp EECTTCEECTTCEEES-------CEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred EECCCCEECCCCEEeC-------CEECCCCEEcCCCEEcCCCEECCCCEECCCCEE
Confidence 9999999999999853 567777777777665 7889999988864
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=120.55 Aligned_cols=216 Identities=12% Similarity=0.101 Sum_probs=138.2
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceee---cCccceehhhhhhhhh-------------cCCcEEEEEeccChhhH
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCIN-------------SGINKVYILTQYNSASL 69 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi---~g~~pli~~~l~~l~~-------------~gi~~i~iv~~~~~~~i 69 (442)
..++.+|+||||.||||+ .+.||+|+|| .|+ |++++.++++.+ .++.-+++...+..+.+
T Consensus 33 ~gkvavvlLAGG~GTRLG---~~~PK~~~~Vgl~~gk-s~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t 108 (405)
T 3oc9_A 33 QGKTALITPAGGQGSRLG---FEHPKGMFVLPFEIPK-SIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEI 108 (405)
T ss_dssp TTCEEEEEECCSBCTTTT---CCSBGGGCEECSSSCE-EHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHH
T ss_pred cCceEEEEecCCCccccc---CCCCCccccccCCCCC-cHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHH
Confidence 357999999999999996 6899999999 899 999999988864 46776666666777899
Q ss_pred HHHHHhhccCCCC---ccc-CCceEEEeccccc----CCcCCCccccChHHHHHHhhh--hhcCCCCCccCeEEEEcCCe
Q 013483 70 NRHLARAYNYGSG---VTF-GDGCVEVLAATQT----PGEAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDH 139 (442)
Q Consensus 70 ~~~~~~~~~~~~~---~~~-~~~~v~i~~~~~~----~~~~~~~~~~G~~~al~~~~~--~l~~~~~~~~~~~lv~~gD~ 139 (442)
.+++++...|+-. ..+ ....+..+..+.. ....-...|.|+++.+..... .++++...+.+++.+.+.|.
T Consensus 109 ~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN 188 (405)
T 3oc9_A 109 NNYFKEHQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDN 188 (405)
T ss_dssp HHHHHHTGGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTB
T ss_pred HHHHHhCcccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCC
Confidence 9999764323211 110 0011110000000 000012235688887765432 22222112246899999999
Q ss_pred -eeecCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEE-cCCCceEEEEeCCCcccccccccccccccccccccccc
Q 013483 140 -LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEK 217 (442)
Q Consensus 140 -i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~-d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (442)
+.......++.+|..+++++++.+.+...+ .+..|.++. |...+|+.+.+.|.. ...+ ..+ . ...
T Consensus 189 ~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~-dek~Gvl~~~dg~~~vvEysei~~e-~e~~-~~~--------g--~l~ 255 (405)
T 3oc9_A 189 ILCKDVDPNMIGYMDLLQSEICIKIVKKGFK-EEKVGVLVKEQERIKVVEYTELTDE-LNKQ-LSN--------G--EFI 255 (405)
T ss_dssp TTCCSSCHHHHHHHHHTTCSEEEEEEECCST-TCSCCEEEEETTEEEEECGGGCCTT-TTCB-CTT--------S--CBS
T ss_pred cccccCCHHHHHHHHHcCCCEEEEEEECCCC-CCccceEEEECCeeEEEEEeeCCHH-Hhhc-CCC--------C--cee
Confidence 888888889999999999999988876652 267888775 433366666665554 1100 000 0 012
Q ss_pred cceeeeeEEEEeHHHHHHHHh
Q 013483 218 PYIASMGVYLFKKEILLNLLR 238 (442)
Q Consensus 218 ~~l~~~Giy~~~~~~l~~~l~ 238 (442)
.+..++++|+|+.++|.+.++
T Consensus 256 fn~~Ni~~h~fs~~fL~~i~~ 276 (405)
T 3oc9_A 256 YNCGHISINGYSTSFLEKAAE 276 (405)
T ss_dssp SCEEEEEEEEEEHHHHHHHTT
T ss_pred eccceeEeeecCHHHHHHhhh
Confidence 245688999999999987763
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-12 Score=119.85 Aligned_cols=30 Identities=10% Similarity=0.014 Sum_probs=17.9
Q ss_pred cceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 413 EADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 413 ~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
..++||++++|+.++.+ ||++++||++++|
T Consensus 125 ~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V 159 (266)
T 3r0s_A 125 HDCLLGNNIILANNATLAGHVELGDFTVVGGLTPI 159 (266)
T ss_dssp TTCEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred cccccCCCeEECCCceecCCeEECCCcEEccCCEE
Confidence 34455556666555544 6777777776653
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.36 E-value=5.7e-12 Score=111.46 Aligned_cols=96 Identities=19% Similarity=0.285 Sum_probs=77.7
Q ss_pred eEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceE---EECCccccchhhhhhhhcCCCcceEeCCCcEe--------
Q 013483 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTM---MLGADFYETDAEVASLLAEGRVPVGIGENTKI-------- 388 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-------- 388 (442)
..+++++.|. .+.+ .++.||++|.|++++.|..+. .+|++ |.|+++|.|
T Consensus 16 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~~~ 77 (187)
T 3r3r_A 16 PGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGAR------------------TNIQDGSVLHVTHKSSS 77 (187)
T ss_dssp CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECBCCBTT
T ss_pred cccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCC------------------CEECCCCEEecCCcccc
Confidence 4455566665 4444 589999999999999998754 88987 899999999
Q ss_pred ----eeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 389 ----KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 389 ----~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.+++||++|.|++++++.+ .+||++++||++++| ||++++||+|++|
T Consensus 78 ~~~~~~~~Ig~~~~Ig~~~~i~~-------~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V 133 (187)
T 3r3r_A 78 NPHGNPLIIGEDVTVGHKVMLHG-------CTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLV 133 (187)
T ss_dssp BC-CBCEEECSSCEECTTCEEES-------CEECSSEEECTTCEECTTCEECSSEEECTTCEE
T ss_pred CCCCCCeEECCCCEECCCCEEeC-------cEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence 6899999999999999953 577777777777765 7888888888864
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.35 E-value=9.1e-12 Score=116.27 Aligned_cols=56 Identities=13% Similarity=0.164 Sum_probs=30.6
Q ss_pred CCCcccccCccCCCceecCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCc
Q 013483 298 ATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 361 (442)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~ 361 (442)
+...+++.+.+.+++.+. .++.|+++|+|+. ++.||++|.|++++.|...+.+|++
T Consensus 4 ~~~~I~p~a~I~~~a~Ig----~~v~I~~~~~I~~----~v~IG~~~~I~~~~~I~~~~~IG~~ 59 (262)
T 2qia_A 4 KSAFVHPTAIVEEGASIG----ANAHIGPFCIVGP----HVEIGEGTVLKSHVVVNGHTKIGRD 59 (262)
T ss_dssp TTCEECTTCEECTTCEEC----TTCEECTTCEECT----TEEECTTCEECSSCEECSEEEECSS
T ss_pred CCCeECCCCEECCCCEEC----CCCEECCCCEECC----CCEECCCcEECCCCEECCCcEECCC
Confidence 344444444444433331 1344555555442 5677777777777777766666666
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=7.4e-12 Score=112.44 Aligned_cols=110 Identities=17% Similarity=0.099 Sum_probs=78.8
Q ss_pred ccccCccCCCceecCCceeeeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCC
Q 013483 302 IYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEG 376 (442)
Q Consensus 302 ~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~ 376 (442)
+...+.+++++.+... .++.||++|.|+ .+.| .+++||++|.|++++.|... +++|++
T Consensus 35 ig~~~~I~~~~~i~~~--~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~--------------- 97 (205)
T 3vbi_A 35 VGKNVLISKKASIYNP--GVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDF--------------- 97 (205)
T ss_dssp ECSSEEEBTTSEEESG--GGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTT---------------
T ss_pred ECCCCEECCCeEEccC--CeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCC---------------
Confidence 3444555555555210 146777777777 5666 48999999999999999543 788887
Q ss_pred CcceEeCCCcEe--------------------------eeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-
Q 013483 377 RVPVGIGENTKI--------------------------KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV- 429 (442)
Q Consensus 377 ~~~~~i~~~~~i--------------------------~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v- 429 (442)
|.|+++|.| ++++||++|.||++++|.. ..+||+++.||++++|
T Consensus 98 ---~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~------gv~Ig~~~~Ig~gsvV~ 168 (205)
T 3vbi_A 98 ---ANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFP------NVVIGEGVAVGAMSMVK 168 (205)
T ss_dssp ---CEECTTCEEESEECCCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECS------SCEECTTCEECTTCEEC
T ss_pred ---CEECCCcEEEeCCCCcccccccCcccccccceeccCCEEECCCCEECCCCEEcC------CCEECCCCEEcCCCEEC
Confidence 899999988 4688888888888888864 5677888888888777
Q ss_pred --EcCCcEEc
Q 013483 430 --ILKNSVIT 437 (442)
Q Consensus 430 --i~~~~~v~ 437 (442)
+.+++++.
T Consensus 169 ~~v~~~~v~~ 178 (205)
T 3vbi_A 169 ESLDDWYIYV 178 (205)
T ss_dssp SCBCTTEEEE
T ss_pred CccCCCeEEE
Confidence 55555443
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.6e-12 Score=117.44 Aligned_cols=11 Identities=9% Similarity=-0.040 Sum_probs=4.7
Q ss_pred EcCCcEEcCCc
Q 013483 430 ILKNSVITDGF 440 (442)
Q Consensus 430 i~~~~~v~~~~ 440 (442)
||++++||+++
T Consensus 142 Igd~~~Ig~~a 152 (259)
T 3hsq_A 142 LGNFAFISGLV 152 (259)
T ss_dssp ECSSCEECSSE
T ss_pred ECCCcEEeCCC
Confidence 34444444443
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-12 Score=128.27 Aligned_cols=103 Identities=18% Similarity=0.260 Sum_probs=62.9
Q ss_pred eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcE
Q 013483 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 398 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ 398 (442)
++.||+++.|+ .+.| .+++||++|.|++++.|. ++.+|++ +.|+++|.|.+++||++|.
T Consensus 265 ~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~------------------~~I~~~~~i~~~~ig~~~~ 325 (456)
T 2v0h_A 265 TLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLK-NVVIGND------------------VEIKPYSVLEDSIVGEKAA 325 (456)
T ss_dssp EEEECSSCEECSSEEEEEEEEECTTCEECTTCEEE-EEEECTT------------------CEECSSCEEEEEEECTTCE
T ss_pred ceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEE-eEEEeCC------------------CEEcCCeEEccCcCCCCcE
Confidence 46677777777 5555 578888888888888887 4455655 5555555555555555554
Q ss_pred ECCCeEEccCCCcc----------------------------cceeeCCCeEEccCcE------------EEcCCcEEcC
Q 013483 399 IGKNVIIANSEGIQ----------------------------EADRSAEGFYIRSGVT------------VILKNSVITD 438 (442)
Q Consensus 399 ig~~~~~~~~~~~~----------------------------~~~~~~~~~~i~~~~~------------vi~~~~~v~~ 438 (442)
||+++.+.....+. ...+||++++||+++. +||++++||+
T Consensus 326 I~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~ 405 (456)
T 2v0h_A 326 IGPFSRLRPGAELAAETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGS 405 (456)
T ss_dssp ECSSEEECTTCEECTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECT
T ss_pred ECCccEECCCCEECCCCEECCCCEEeccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECC
Confidence 44444443221111 1136777777776653 3777777777
Q ss_pred CccC
Q 013483 439 GFVI 442 (442)
Q Consensus 439 ~~~i 442 (442)
+++|
T Consensus 406 ~~~i 409 (456)
T 2v0h_A 406 DTQL 409 (456)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 7754
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.7e-12 Score=120.70 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=6.6
Q ss_pred EcCCcEEcCCcc
Q 013483 430 ILKNSVITDGFV 441 (442)
Q Consensus 430 i~~~~~v~~~~~ 441 (442)
|+++++|++||+
T Consensus 254 Ip~~svV~~Gs~ 265 (304)
T 3eg4_A 254 VPPYSVVVAGTM 265 (304)
T ss_dssp ECTTEEEEEEEE
T ss_pred eCCCCEEecCcE
Confidence 555565555543
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=109.81 Aligned_cols=97 Identities=19% Similarity=0.214 Sum_probs=69.8
Q ss_pred eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEe---ceEEECCccccchhhhhhhhcCCCcceEeCCCcEee------
Q 013483 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLK---DTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK------ 389 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~------ 389 (442)
+..|+++++|. .+.| .+++||++|.|++++.|. ..+.+|++ |.|+++|+|.
T Consensus 12 ~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~------------------~~I~~~~~I~~~~~~~ 73 (194)
T 3tv0_A 12 SVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEG------------------NLIEEQALIINAYPDN 73 (194)
T ss_dssp CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTT------------------CEECTTCEEEECCCSC
T ss_pred CCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCC------------------ccccCCcccccccccc
Confidence 35566666666 4555 479999999999999995 45788887 8888888884
Q ss_pred -----------eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 390 -----------ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 390 -----------~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+++||+++.|+.++++.+ .+|+++++||.++.| ||++++||+||+|
T Consensus 74 ~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-------~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV 135 (194)
T 3tv0_A 74 ITPDTEDPEPKPMIIGTNNVFEVGCYSQA-------MKMGDNNVIESKAYVGRNVILTSGCIIGACCNL 135 (194)
T ss_dssp C---------CCEEECSSCEECTTCEECC-------SEECSSCEECTTCEECTTEEECSSCEECTTCEE
T ss_pred cccccccCcCCceEECCcceEecceeEee-------eeecccceecceeeECCeEEECCCCEECCCCEE
Confidence 357788888887777753 345555555555444 7899999988875
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-11 Score=106.92 Aligned_cols=94 Identities=17% Similarity=0.316 Sum_probs=72.7
Q ss_pred EcCCCEEe-ceEE-eeeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCCCcceEeCCCcEee-----eeEe
Q 013483 324 ISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----ECII 393 (442)
Q Consensus 324 i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-----~~~i 393 (442)
+++++.|. .+.+ .++.||++|.|++++.|... +.+|++ +.|+++|.|. +++|
T Consensus 13 i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~------------------~~I~~~~~I~~~~~~~~~I 74 (173)
T 1v3w_A 13 IHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKY------------------SNVQDNVSIHTSHGYPTEI 74 (173)
T ss_dssp ECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECBTTBCEEE
T ss_pred ECCCCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCC------------------CEECCCcEEEecCCCCeEE
Confidence 44444444 3444 47899999999999999874 788887 8999999996 5899
Q ss_pred CCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 394 DKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 394 g~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
|++|.|++++.+.+ .+|++++|||.++.| ||++++||+|++|
T Consensus 75 g~~~~I~~~~~i~~-------~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V 121 (173)
T 1v3w_A 75 GEYVTIGHNAMVHG-------AKVGNYVIIGISSVILDGAKIGDHVIIGAGAVV 121 (173)
T ss_dssp CSSCEECTTCEEES-------CEECSSEEECTTCEECTTCEECSSEEECTTCEE
T ss_pred CCCCEECCCCEECC-------CEECCCCEECCCCEEeCCCEECCCCEECCCCEE
Confidence 99999999998843 567777777777665 7888888888764
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-11 Score=114.40 Aligned_cols=118 Identities=18% Similarity=0.150 Sum_probs=55.7
Q ss_pred eeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhh------hhhcCCCcceEeCCCcEee-eeEe
Q 013483 321 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA------SLLAEGRVPVGIGENTKIK-ECII 393 (442)
Q Consensus 321 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~i~-~~~i 393 (442)
++.|+++|+|+. +++||++|.|++++.|.+.+.+|+++.+.+.... ..+......+.||+++.|+ +|.|
T Consensus 19 ~~~Ig~~~~I~~----~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~~~~~I 94 (270)
T 1j2z_A 19 GVEIGEFCVIGD----GVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMI 94 (270)
T ss_dssp TCEECTTCEECT----TCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTTCEE
T ss_pred CCEECCCCEECC----CCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEECCCeEE
Confidence 344444444442 6777777777777777777777766322221000 0000000113444444442 2222
Q ss_pred CC-------CcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 394 DK-------NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 394 g~-------~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.. ++.||+++.+.....+...++||++++|+.++.+ ||++++||++++|
T Consensus 95 ~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V 155 (270)
T 1j2z_A 95 NPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAI 155 (270)
T ss_dssp CCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred cCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEE
Confidence 11 1222222222222222334456666666665554 7788888777754
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.7e-13 Score=125.38 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=17.9
Q ss_pred eEEcCCCEEeceEE-eeeEEcCCcEECCCCEEeceEEECCc
Q 013483 322 SIISHGSFITSSFI-EHSVVGIRSRINANVHLKDTMMLGAD 361 (442)
Q Consensus 322 ~~i~~~~~i~~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~ 361 (442)
+.||++|+|.+..+ .++.||++|.|+.++.|++++.+|++
T Consensus 158 ~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~ 198 (316)
T 3tk8_A 158 SFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKN 198 (316)
T ss_dssp CEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTT
T ss_pred cEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCC
Confidence 44555555543222 23444444444444444444444443
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-12 Score=120.60 Aligned_cols=87 Identities=11% Similarity=0.137 Sum_probs=46.9
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccC-CCc-ccc
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANS-EGI-QEA 414 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~-~~~-~~~ 414 (442)
++.||+++.|++++.|+.++.+|++ +.|..++.++ ++||++|.|++++++... .+. ...
T Consensus 196 GA~IGeGv~Igp~a~Vn~na~IGdg------------------~iI~~~a~ig-v~IGdnv~IgpGa~IgG~~~~~~~~~ 256 (347)
T 3r5d_A 196 GAYIGEGTTVMHEGFVNFNAGTEGP------------------GMIEGRVSAG-VFVGKGSDLGGGCSTMGTLSGGGNIV 256 (347)
T ss_dssp TEEECTTEEECTTCEECTTEEESSS------------------EEECSEECTT-CEECTTEEECTTCEECC------CCC
T ss_pred CCEECCCCEECCCCEECCCCEECCC------------------cEEcCCceEe-EEECCCCEECCCCEEccccCCCCccc
Confidence 3455555555555555555555544 4555555444 666666666666666532 111 112
Q ss_pred eeeCCCeEEccCcEE---EcCCcEEcCCccC
Q 013483 415 DRSAEGFYIRSGVTV---ILKNSVITDGFVI 442 (442)
Q Consensus 415 ~~~~~~~~i~~~~~v---i~~~~~v~~~~~i 442 (442)
++||+++|||+|++| ||++++||+|++|
T Consensus 257 V~IGdnv~IGAnAtIGVtIGd~~iIGAGSVV 287 (347)
T 3r5d_A 257 ISVGEGCLIGANAGIGIPLGDRNIVEAGLYI 287 (347)
T ss_dssp CEECTTCEECTTCEECSCBCTTCEECTTCEE
T ss_pred eEECCCCEECCCCEEeeEECCCCEECCCCEE
Confidence 466666666666665 6666666666653
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=110.60 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=72.9
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEec----eEEECCccccchhhhhhhhcCCCcceEeCCCcEeee-------
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKD----TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE------- 390 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~------- 390 (442)
++|+++|.+. .++.||++|.|++++.|.. .+.+|++ +.|+++|.|..
T Consensus 46 ~~I~~~a~i~----~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~------------------~~Ig~~~~I~~~~~~~~i 103 (213)
T 3kwd_A 46 AYVHSFSNLI----GDVRIKDYVHIAPGTSIRADEGTPFHIGSR------------------TNIQDGVVIHGLQQGRVI 103 (213)
T ss_dssp CEECTTSEEE----ESEEECTTCEECTTCEEEESSSCCEEECTT------------------CEECTTCEEEECSSCCEE
T ss_pred CEECCCCEEe----CceEECCCCEEcCCcEEecCCCCceEECCC------------------CEECCCCEEEecCCCcee
Confidence 4444455444 3789999999999999965 4788887 89999999964
Q ss_pred --------eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE----EcCCcEEcCCccC
Q 013483 391 --------CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV----ILKNSVITDGFVI 442 (442)
Q Consensus 391 --------~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v----i~~~~~v~~~~~i 442 (442)
++||++|.|++++.+. ...+||++++||++++| ||++++||+|++|
T Consensus 104 g~~~~~~~~~IG~~v~Ig~~~~I~------~~v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V 161 (213)
T 3kwd_A 104 GDDGQEYSVWIGDNVSITHMALIH------GPAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLI 161 (213)
T ss_dssp CTTSCEESEEECTTCEECTTCEEE------EEEEECTTCEECTTCEEEEEEECTTCEECSSCEE
T ss_pred ccCCcccceEECCCcEECCCcEEc------CCCEECCCCEECCCCEEeCcEECCCCEEcCCCEE
Confidence 6777777777777775 45788889999998876 8999999999875
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=121.39 Aligned_cols=61 Identities=23% Similarity=0.254 Sum_probs=33.1
Q ss_pred cccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCc
Q 013483 301 PIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGAD 361 (442)
Q Consensus 301 ~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~ 361 (442)
.+.+.+.+.+.+.+ +++.|. +++|+++++|+ ++.| .+++||+++.||++|.|+.++.++.+
T Consensus 121 ~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~~I~~~~~I~~~ 185 (372)
T 3pmo_A 121 GIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHD 185 (372)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred ccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcccCCCcEEEee
Confidence 44555555555555 344443 35555555555 4444 45556666666666666655555544
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-11 Score=113.26 Aligned_cols=104 Identities=19% Similarity=0.304 Sum_probs=59.8
Q ss_pred cCCCCcccccCccCCCcee-cCCce-eeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhh
Q 013483 296 YDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLL 373 (442)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i-~~~~i-~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 373 (442)
+++.+.+.+.+.++.++.+ .++.| .++.||++|.|+. +++|+.++.||++|.|+.++.+.+.. .
T Consensus 94 I~~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~----~~~I~~~~~IG~~~~I~~~~~i~~~~----------~ 159 (240)
T 3r8y_A 94 IEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDM----NAVLGGRATVGKNCHVGAGAVLAGVI----------E 159 (240)
T ss_dssp ECTTCEEBSSCEECTTCEECTTCEECTTCEECTTCEECT----TCEECTTCEECTTCEECTTCEECCCC----------S
T ss_pred ECCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECC----CCEECCCCEECCCcEECCCcEECCCc----------c
Confidence 3344444455555555555 34444 2455555555541 45555555555555555555554320 0
Q ss_pred cCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCccc
Q 013483 374 AEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQE 413 (442)
Q Consensus 374 ~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~ 413 (442)
.....|+.||++|.|+ +|+|.++++||++++++....+.+
T Consensus 160 ~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~ 200 (240)
T 3r8y_A 160 PPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTE 200 (240)
T ss_dssp CTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred CCCCCCcEECCCCEECCCCEECCCcEECCCCEECCCCEECC
Confidence 1112238899999997 788888888888888887554443
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-11 Score=115.62 Aligned_cols=56 Identities=18% Similarity=0.142 Sum_probs=30.1
Q ss_pred CCCcccccCccCCCceecCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCc
Q 013483 298 ATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 361 (442)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~ 361 (442)
+.+.+++++.+.+.+.+.. ++.|+++|+|+. ++.||++|.|++++.|...+.+|++
T Consensus 6 ~~~~I~p~A~I~~~a~Ig~----~v~Ig~~~~I~~----~v~IG~~~~I~~~~~I~g~~~IG~~ 61 (305)
T 3t57_A 6 SEVLIHPSAVVHPNAVIGK----GVSVGPYCTIGS----SVKLGNGCKLYPSSHVFGNTELGES 61 (305)
T ss_dssp ---CBCTTSEECTTSEECT----TCEECTTCEECT----TEEECTTCEECTTCEECSSEEECTT
T ss_pred CCCeECCCCEECCCCEECC----CCEECCCCEECC----CCEECCCCEECCCcEECCCcEECCC
Confidence 4444555555555444421 344444444442 6677777777777777766666666
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.7e-12 Score=126.83 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=76.8
Q ss_pred cCccCCCcee-cCCce-eeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceE
Q 013483 305 SRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 381 (442)
Q Consensus 305 ~~~~~~~~~i-~~~~i-~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (442)
.+.+++.+.+ +++.| .++.||++|.|+ ++.|.+++||++|.|++++.|+++ .+|++ +.
T Consensus 268 ~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~-~Ig~~------------------~~ 328 (459)
T 4fce_A 268 ELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDA-RLDAN------------------CT 328 (459)
T ss_dssp EEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESC-EECTT------------------CE
T ss_pred cEEECCCcEECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCC-EECCC------------------CE
Confidence 4456666666 45555 357777777777 666666777777777777777553 34544 66
Q ss_pred eCCCcEee-eeEeCCCcEECCCeEEccC-----CCcc-----cceeeCCCeEEccCc------------EEEcCCcEEcC
Q 013483 382 IGENTKIK-ECIIDKNARIGKNVIIANS-----EGIQ-----EADRSAEGFYIRSGV------------TVILKNSVITD 438 (442)
Q Consensus 382 i~~~~~i~-~~~ig~~~~ig~~~~~~~~-----~~~~-----~~~~~~~~~~i~~~~------------~vi~~~~~v~~ 438 (442)
||++|.|. +++||++|.||+++.+.+. ..+. +..+||++++||.++ ++||++++||+
T Consensus 329 ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~ 408 (459)
T 4fce_A 329 VGPFARLRPGAELAEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGS 408 (459)
T ss_dssp ECSSEEECTTCEECTTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECT
T ss_pred ECCccEECCCcEECCCcEECCCeEEeeeEEcCCCEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcC
Confidence 66666665 6666666666666554321 1111 123788888888776 45899999998
Q ss_pred CccC
Q 013483 439 GFVI 442 (442)
Q Consensus 439 ~~~i 442 (442)
|++|
T Consensus 409 ~~~I 412 (459)
T 4fce_A 409 DTQL 412 (459)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8875
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=124.29 Aligned_cols=121 Identities=18% Similarity=0.271 Sum_probs=85.6
Q ss_pred ccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCc
Q 013483 302 IYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRV 378 (442)
Q Consensus 302 ~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (442)
+.+++.+++.+.+ +++.|. ++.||++|+|+ .+.|.+++||++|.|+ ++.|.++. +|++
T Consensus 271 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~-Ig~~----------------- 331 (468)
T 1hm9_A 271 IDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEESS-VADG----------------- 331 (468)
T ss_dssp ECTTCEECTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEEC-SCEEESCE-ECTT-----------------
T ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEE-EEEEeccc-cCCC-----------------
Confidence 3344556666666 455554 68888888888 7777888899999998 88888754 4554
Q ss_pred ceEeCCCcEee-eeEeCCCcEECCCeEEccC-----CCcc-----cceeeCCCeEEccCc------------EEEcCCcE
Q 013483 379 PVGIGENTKIK-ECIIDKNARIGKNVIIANS-----EGIQ-----EADRSAEGFYIRSGV------------TVILKNSV 435 (442)
Q Consensus 379 ~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~-----~~~~-----~~~~~~~~~~i~~~~------------~vi~~~~~ 435 (442)
+.||++|.|. +++||++|.||+++.+.+. ..+. ...+||++++||.++ ++||++++
T Consensus 332 -~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~ 410 (468)
T 1hm9_A 332 -VTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVF 410 (468)
T ss_dssp -CEECSSCEECSSCEECTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCE
T ss_pred -cEECCceEEecCcEECCccEECCCcEEeeeEEcCCcEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeE
Confidence 7888888887 7888888888876666431 1111 123678888888764 45888888
Q ss_pred EcCCccC
Q 013483 436 ITDGFVI 442 (442)
Q Consensus 436 v~~~~~i 442 (442)
||+|++|
T Consensus 411 Ig~~~~i 417 (468)
T 1hm9_A 411 VGSNSTI 417 (468)
T ss_dssp ECTTCEE
T ss_pred ECCCCEE
Confidence 8888764
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-11 Score=106.78 Aligned_cols=95 Identities=14% Similarity=0.270 Sum_probs=75.5
Q ss_pred EEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec---eEEECCccccchhhhhhhhcCCCcceEeCCCcEeeee------
Q 013483 323 IISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC------ 391 (442)
Q Consensus 323 ~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~------ 391 (442)
.|++++.|. .+.+ .++.||++|.|++++.|.. .+.+|++ |.|+++|.|..+
T Consensus 21 ~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~~~~ 82 (189)
T 3r1w_A 21 KLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGAR------------------TSVQDGSVLHITHASDYN 82 (189)
T ss_dssp EECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECBCCSSSS
T ss_pred EECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCC------------------CEECCCCEEecCCcccCC
Confidence 455555555 4444 4899999999999999984 4588987 899999999654
Q ss_pred ------EeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 392 ------IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 392 ------~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+||++|.|++++.+.+ .+||++++||++++| ||++++||+|++|
T Consensus 83 ~~~~~~~Ig~~~~Ig~~~~i~~-------~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 137 (189)
T 3r1w_A 83 PGGYPLIIGDDVTIGHQAMLHG-------CTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATV 137 (189)
T ss_dssp TTCBCEEECSSEEECTTCEEES-------CEECSSEEECTTCEECTTCEECSSCEECTTCEE
T ss_pred CCCCCeEECCCCEECCCCEEeC-------cEECCCcEECCCCEEcCCCEECCCCEEccCCEE
Confidence 9999999999999863 577777777777766 7889999988864
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=115.16 Aligned_cols=25 Identities=8% Similarity=0.158 Sum_probs=10.4
Q ss_pred eeEEcCCcEECCCCEEeceEEECCc
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGAD 361 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~ 361 (442)
++.||++|.|++++.|++++.+|++
T Consensus 133 ~~~IG~~~~I~~~~~Ig~~~~IG~~ 157 (276)
T 3gos_A 133 GAFVDEGTMVDTWATVGSCAQIGKN 157 (276)
T ss_dssp TCEECTTCEECTTEEECTTCEECTT
T ss_pred CeEECCCCEECCCCEECCCCEECCC
Confidence 3444444444444444443334433
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.7e-12 Score=116.11 Aligned_cols=51 Identities=10% Similarity=0.232 Sum_probs=25.2
Q ss_pred eEeCCCcEECCCeEEccC-CC-cccceeeCCCeEEccCcEE---EcCCcEEcCCcc
Q 013483 391 CIIDKNARIGKNVIIANS-EG-IQEADRSAEGFYIRSGVTV---ILKNSVITDGFV 441 (442)
Q Consensus 391 ~~ig~~~~ig~~~~~~~~-~~-~~~~~~~~~~~~i~~~~~v---i~~~~~v~~~~~ 441 (442)
+.||++|.|++++++... .. .....+||+++|||++++| ||++++||+||+
T Consensus 208 v~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtIgVtIGd~~iIGAGSV 263 (332)
T 3fsy_A 208 VVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGLGISLGDDCVVEAGLY 263 (332)
T ss_dssp CEECTTCEECTTCEECSBCC---CCBCEECTTCEECTTCEECSCBCSSCEECTTCE
T ss_pred eEECCCCEECCCCEEcCCCCCCCccceEECCCCEECCCCEEeeEECCCCEECCCCE
Confidence 555555555555555431 11 1112355555555555554 555555555554
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-10 Score=104.00 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=49.7
Q ss_pred CCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCC
Q 013483 326 HGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKN 402 (442)
Q Consensus 326 ~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~ 402 (442)
++|+|. .+.| .++.||++|.|++++.|++.+.+|++ +.|+++|.|. +++||++|.||++
T Consensus 94 ~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~Ig~~~~Ig~~ 155 (194)
T 3bfp_A 94 AGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEF------------------SHVSVGAKCAGNVKIGKNCFLGIN 155 (194)
T ss_dssp SCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT------------------CEECTTCEECTTCEECTTCEECTT
T ss_pred CCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCC------------------CEECCCCEECCCcEECCCCEEcCC
Confidence 444444 2223 25666666777666666655555655 6666666665 3666666666666
Q ss_pred eEEccCCCcccceeeCCCeEEccCcEE
Q 013483 403 VIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
+++. ...+|+++++||+|++|
T Consensus 156 ~~i~------~~~~Ig~~~~Igagsvv 176 (194)
T 3bfp_A 156 SCVL------PNLSLADDSILGGGATL 176 (194)
T ss_dssp CEEC------TTCEECTTCEECTTCEE
T ss_pred CEEC------CCCEECCCCEECCCCEE
Confidence 6665 34567777777777666
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.1e-11 Score=113.55 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=71.8
Q ss_pred CcccccCccCCCceecCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhh--------hh
Q 013483 300 KPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE--------VA 370 (442)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~--------~~ 370 (442)
+.+.+++.+++++.+.+ ++.|+++|+|+ .+.|.+|+||+++.|+++++|+++++.++..+..... ..
T Consensus 66 a~I~~~a~I~~~~~I~g----~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~ 141 (334)
T 2pig_A 66 AMAFAGTEITGNARITQ----PCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAI 141 (334)
T ss_dssp CEEETTCEECTTCEEES----SCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC-
T ss_pred eEEcCCcEECCCcEEee----eeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeec
Confidence 33344444444444422 34555555555 4455566666666666666666554332210000000 00
Q ss_pred hhhcCC-CcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCc---EEEcCCcEEcCCcc
Q 013483 371 SLLAEG-RVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV---TVILKNSVITDGFV 441 (442)
Q Consensus 371 ~~~~~~-~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~---~vi~~~~~v~~~~~ 441 (442)
+.++.. ...+.|++++.|.+|+|+++|.|+.++++. ...+.....|++++.+..++ +.|++++.|++++.
T Consensus 142 ~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~-~svI~~~a~I~~~a~V~~~~~~~v~I~~~~~I~g~a~ 215 (334)
T 2pig_A 142 QGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATIT-HAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHAR 215 (334)
T ss_dssp -------CCCEEECTTCEEESCEEETTCEECTTCEEE-SEEECTTCEECTTCEEECCSSCCEEECTTCEECTTCE
T ss_pred ceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEe-CcEEcCCCEECCCcEECCceeccEEECCCcEEeeeEE
Confidence 111111 111778888888888888888888888886 34444444555555554432 33677777777654
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.3e-11 Score=106.33 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=67.3
Q ss_pred eeEEcCCCEEe-c-eEEe----eeEEcCCcEECCCCEEec---eEEECCccccchhhhhhhhcCCCcceEeCCCcEe---
Q 013483 321 DSIISHGSFIT-S-SFIE----HSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI--- 388 (442)
Q Consensus 321 ~~~i~~~~~i~-~-~~i~----~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i--- 388 (442)
+..|+++|.|. . ..+. ++.||++|.|++++.|.. .+.+|++ +.|++.+.+
T Consensus 36 ~v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~------------------~~Ig~~~ii~~~ 97 (215)
T 2wlg_A 36 SVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAK------------------TTMGNGEITIAE 97 (215)
T ss_dssp EEEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTT------------------CEECSEEEEECT
T ss_pred EEEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCC------------------CEECCEEEEEeC
Confidence 45666666666 3 2332 367777777777777753 3666665 677764444
Q ss_pred -eeeEeCCCcEECCCeEEccCC-------------CcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 389 -KECIIDKNARIGKNVIIANSE-------------GIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 389 -~~~~ig~~~~ig~~~~~~~~~-------------~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.+++||++|.|++++++.+.. ......+||+++|||++++| ||++++|++||+|
T Consensus 98 ~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV 170 (215)
T 2wlg_A 98 KGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVL 170 (215)
T ss_dssp TCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred CCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEE
Confidence 567788888888888877542 11223578888888888766 7777777777753
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.6e-11 Score=114.21 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=17.9
Q ss_pred eEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECC
Q 013483 322 SIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGA 360 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~ 360 (442)
+.|+.++.|+ ++.|...+|+.++.||+++.|...+.+|+
T Consensus 152 a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~ 191 (316)
T 3tk8_A 152 AIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGS 191 (316)
T ss_dssp CEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECT
T ss_pred eEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECC
Confidence 3444444444 33443334444445555555544444444
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.20 E-value=6.6e-11 Score=110.86 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=13.5
Q ss_pred EEcCCcEECCCCEEeceEEECCc
Q 013483 339 VVGIRSRINANVHLKDTMMLGAD 361 (442)
Q Consensus 339 ~ig~~~~i~~~~~i~~~~~~~~~ 361 (442)
+|+.++.||+++.|...+.++++
T Consensus 129 ~i~~~~~IG~~~~I~~~~~Ig~~ 151 (276)
T 3gos_A 129 YVNIGAFVDEGTMVDTWATVGSC 151 (276)
T ss_dssp EECTTCEECTTCEECTTEEECTT
T ss_pred EEcCCeEECCCCEECCCCEECCC
Confidence 55566666666666655555554
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.4e-11 Score=107.99 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=42.5
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccce
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEAD 415 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~ 415 (442)
++.||++|.|++++.|++.+.+|++ +.|++++.|. +++||++|.||+++++.. ..
T Consensus 129 ~~~IG~~~~I~~~~~I~~~~~Ig~~------------------~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~------~~ 184 (220)
T 4ea9_A 129 DSWIGDLAIINTGAVVDHDCRLGAA------------------CHLGPASALAGGVSVGERAFLGVGARVIP------GV 184 (220)
T ss_dssp TCEECTTCEECTTCEECTTCEECTT------------------CEECTTCEECSSCEECTTCEECTTCEECT------TC
T ss_pred CCEECCCCEECCCCEECCCCEECCC------------------CEECCCCEEcCCCEECCCCEECCCCEEcC------Cc
Confidence 4566666666666666655555554 5666666665 366666666666666653 44
Q ss_pred eeCCCeEEccCcEE
Q 013483 416 RSAEGFYIRSGVTV 429 (442)
Q Consensus 416 ~~~~~~~i~~~~~v 429 (442)
+||+++.||+|++|
T Consensus 185 ~Ig~~~~igagsvv 198 (220)
T 4ea9_A 185 TIGADTIVGAGGVV 198 (220)
T ss_dssp EECTTCEECTTCEE
T ss_pred EECCCCEECCCCEE
Confidence 56666666666665
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=105.01 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=63.3
Q ss_pred eecCChHHHHHHhhhhhcCC-CCccccCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcE
Q 013483 271 EDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSR 345 (442)
Q Consensus 271 ~di~t~~~~~~an~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~ 345 (442)
.-+++++...+..+.+.... ....+.++.+.+...+.++.++.+ .++.|. ++.||++|.|+ .+.| .+++||++|.
T Consensus 76 iAIg~~~~R~~i~~~l~~~g~~~~~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ 155 (220)
T 4ea9_A 76 VAIGDNRLRQKLGRKARDHGFSLVNAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACH 155 (220)
T ss_dssp ECCCCHHHHHHHHHHHHHTTCEECCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred EecCCHHHHHHHHHHHHhcCCCcCCcCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCE
Confidence 34556555555555544332 123445555555555555655555 344442 45666666666 4444 3456666666
Q ss_pred ECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEc
Q 013483 346 INANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIA 406 (442)
Q Consensus 346 i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~ 406 (442)
|++++.|.+.+.+|++ +.||.++.|. ++.||++|.||+++++.
T Consensus 156 i~~~~~i~~~v~Ig~~------------------~~Ig~~~~i~~~~~Ig~~~~igagsvv~ 199 (220)
T 4ea9_A 156 LGPASALAGGVSVGER------------------AFLGVGARVIPGVTIGADTIVGAGGVVV 199 (220)
T ss_dssp ECTTCEECSSCEECTT------------------CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred ECCCCEEcCCCEECCC------------------CEECCCCEEcCCcEECCCCEECCCCEEc
Confidence 6666665555555554 5555555554 45555555555555554
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.4e-11 Score=113.29 Aligned_cols=110 Identities=19% Similarity=0.274 Sum_probs=72.0
Q ss_pred cCccCCCceecCCceeeeEEcCCCEEeceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeC
Q 013483 305 SRRNLPPSKIDDSKIVDSIISHGSFITSSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 383 (442)
Q Consensus 305 ~~~~~~~~~i~~~~i~~~~i~~~~~i~~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 383 (442)
++.+.+++.+.. ++.|+++|+|.+..| .++.||++|.|.+++.|++++.+|++ |.|+
T Consensus 129 g~~I~p~a~I~~----~v~Ig~g~~I~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~------------------v~I~ 186 (304)
T 3eg4_A 129 GFRAVPNCIVRH----SAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGSCAQIGKN------------------VHLS 186 (304)
T ss_dssp CCEECTTCEEBT----TCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTT------------------CEEC
T ss_pred CcEEcCCEEECC----CcEECCCCEEeCCEECCCCEECCCcEEcCCcEECCCCccCCC------------------cEEC
Confidence 344455444422 466777777774444 45677777777777777776666665 7777
Q ss_pred CCcEeee---------eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCc-------EEcCCccC
Q 013483 384 ENTKIKE---------CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNS-------VITDGFVI 442 (442)
Q Consensus 384 ~~~~i~~---------~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~-------~v~~~~~i 442 (442)
+++.|.+ ++||++|.||++++|.. .++||++++||+|++| |++++ .|+++++|
T Consensus 187 ~~~~i~~~~~~~~~~~v~IGd~v~IG~~a~I~~------gv~IG~~avIgagsvV~~g~~Igd~~~g~~~~~~Ip~~svV 260 (304)
T 3eg4_A 187 GGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVE------GCIVREGSVLGMGVFIGKSTKIVDRATGEVFYGEVPPYSVV 260 (304)
T ss_dssp TTCEECCCCSSTTCCCCEECTTCEECTTCEECT------TCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEE
T ss_pred CCCEECCccccCccCCeEEcCCCEECCCCEEcC------CcEECCCcEECCCCEEcCCeEECccceeeeccCEeCCCCEE
Confidence 7777765 88888888888887764 4567777777777555 34443 47776653
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.20 E-value=8.3e-11 Score=112.60 Aligned_cols=130 Identities=17% Similarity=0.085 Sum_probs=82.1
Q ss_pred ccCCCCcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCc----------c
Q 013483 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGAD----------F 362 (442)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~----------~ 362 (442)
.+++...+.+.+.|++.+.| +++.|.++.|++++.|+ .+.|.+++|+++|.|+.++++.+.+.+..+ .
T Consensus 73 ~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~ 152 (334)
T 2pig_A 73 EITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQIL 152 (334)
T ss_dssp EECTTCEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCE
T ss_pred EECCCcEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCe
Confidence 34455666666666667776 56777788888888888 777777777777777777766554443211 0
Q ss_pred ccchh--hhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 363 YETDA--EVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 363 ~~~~~--~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
++.+. ...++..++ |.|+.+|+|++|+|++++.|++++++.... + ....+.+++.|+.++.+
T Consensus 153 ~I~~~a~I~~s~I~~g---~~I~~~a~I~~svI~~~a~I~~~a~V~~~~-~-~~v~I~~~~~I~g~a~V 216 (334)
T 2pig_A 153 QIYDRATVNHSRIVHQ---VQLYGNATITHAFIEHRAEVFDFALIEGDK-D-NNVWICDCAKVYGHARV 216 (334)
T ss_dssp EECTTCEEESCEEETT---CEECTTCEEESEEECTTCEECTTCEEECCS-S-CCEEECTTCEECTTCEE
T ss_pred EECCCCEEeccEEcCC---CEEcCCeEEeCcEEcCCCEECCCcEECCce-e-ccEEECCCcEEeeeEEE
Confidence 11110 011222333 788889999999999999999999997644 1 33345555555444443
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=114.75 Aligned_cols=107 Identities=24% Similarity=0.192 Sum_probs=78.0
Q ss_pred CCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhc
Q 013483 298 ATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLA 374 (442)
Q Consensus 298 ~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 374 (442)
+...+.+.+.++.++.+ .++.|. ++.||++|.|+ ++.|.+++||+++.|++++.|+++++ |++
T Consensus 255 ~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~I-g~~------------- 320 (401)
T 2ggo_A 255 SGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVI-AED------------- 320 (401)
T ss_dssp TTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEE-CTT-------------
T ss_pred CCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEE-CCC-------------
Confidence 34444455566666666 556664 68899999999 68888899999999999998877544 555
Q ss_pred CCCcceEeCCCcEee-------------------------eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 375 EGRVPVGIGENTKIK-------------------------ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 375 ~~~~~~~i~~~~~i~-------------------------~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
+.||++|.|. +++||++|.||+++++. ...+||+++.|++|++|
T Consensus 321 -----~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~------~gv~Ig~~~vi~~gsvv 389 (401)
T 2ggo_A 321 -----VNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTIL------PGVKIGAYARIYPGAVV 389 (401)
T ss_dssp -----CEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEEC------TTCEECTTCEECTTCEE
T ss_pred -----cEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEc------CCcEECCCcEECCCCeE
Confidence 7788888775 45666666666666665 56788888888888777
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=107.63 Aligned_cols=96 Identities=10% Similarity=0.250 Sum_probs=73.9
Q ss_pred EEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEece----EEECCccccchhhhhhhhcCCCcceEeCCCcEee-------
Q 013483 323 IISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK------- 389 (442)
Q Consensus 323 ~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~------- 389 (442)
.|++++.|. .+.+ .++.||++|.|++++.|..+ +.+|++ +.|+++|.|.
T Consensus 61 ~I~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~------------------~~Ig~~~~I~~~~~~~~ 122 (247)
T 1qre_A 61 VIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDR------------------SNVQDGVVLHALETINE 122 (247)
T ss_dssp EECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTT------------------CEECTTCEEEECCSBCT
T ss_pred EECCCcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCC------------------CEECCCeEEEecccccc
Confidence 344455554 3444 47899999999999999774 478887 8999999986
Q ss_pred -----------------eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE----EcCCcEEcCCccC
Q 013483 390 -----------------ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV----ILKNSVITDGFVI 442 (442)
Q Consensus 390 -----------------~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v----i~~~~~v~~~~~i 442 (442)
+++||++|.||+++++.+ ..+||++++||.+++| ||++++||+|++|
T Consensus 123 ~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~~------~~~Ig~~v~IG~~a~I~~v~Ig~~~~IgagsvV 190 (247)
T 1qre_A 123 EGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHG------PAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAA 190 (247)
T ss_dssp TSCBCGGGCEEETTEEESEEECTTCEECTTCEEEE------EEEECTTCEECTTCEEEEEEECTTCEECTTCEE
T ss_pred cCcccccceeeccCccCceEECCCCEECCCCEEcC------CcEECCCCEECCCCEEeceEECCCCEECCCCEE
Confidence 388899999999988864 3577888888877764 8999999998875
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-10 Score=105.54 Aligned_cols=92 Identities=22% Similarity=0.289 Sum_probs=71.3
Q ss_pred eeEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEec---eEEECCccccchhhhhhhhcCCCcceEeCCCcEeee---
Q 013483 321 DSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE--- 390 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~--- 390 (442)
++.||++|.|. .+.+ .+++||++|.|++++.|.. .+.+|++ |.||++|.|.+
T Consensus 85 ~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~------------------~~Ig~~~~I~~~~~ 146 (252)
T 3jqy_B 85 YVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHD------------------CMIARDVILRASDG 146 (252)
T ss_dssp EEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTT------------------CEECSSEEEECSCS
T ss_pred eEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCC------------------CEEcCCcEEecCCC
Confidence 57788888888 5566 3689999999999999986 7778887 88888888875
Q ss_pred -----------------eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 391 -----------------CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 391 -----------------~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
++||++|.||+++++.. ..+||+++.||+|++| +.+++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~------gv~IG~~~~IgagsvV~~~vp~~~~~ 206 (252)
T 3jqy_B 147 HPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMK------GVSVGSGSVIGYGSIVTKDVPSMCAA 206 (252)
T ss_dssp SCEEETTTCBBCCCCCCEEECSSCEECSSEEECT------TCEECTTCEECTTCEECSCBCTTEEE
T ss_pred cccccccccccccccCCeEEecCcEECCCCEECC------CCEECCCCEECCCCEECcccCCCCEE
Confidence 48888888888888864 5677888888888776 4455443
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-10 Score=101.16 Aligned_cols=119 Identities=15% Similarity=0.190 Sum_probs=61.6
Q ss_pred eeeecCChHHHHHHhhhhhcCC-CCccccCCCCcccccCccC--CCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEc
Q 013483 269 YWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNL--PPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVG 341 (442)
Q Consensus 269 ~~~di~t~~~~~~an~~~l~~~-~~~~~~~~~~~~~~~~~~~--~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig 341 (442)
...-++++....+..+.+.+.. .....+++.+.+.+++.++ +++.+ +++.|. ++.||++|.|+ .+.+ .++.||
T Consensus 50 ~~iaig~~~~r~~~~~~l~~~~~~~~~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig 129 (194)
T 3bfp_A 50 FFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIG 129 (194)
T ss_dssp EEECCCCHHHHHHHHHHHHTTTCCBCCEECTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCccccccCCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEEC
Confidence 3456777766666655554322 1223445555555555555 55555 344442 35555555555 4444 245555
Q ss_pred CCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEE
Q 013483 342 IRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVII 405 (442)
Q Consensus 342 ~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~ 405 (442)
++|.|++++.|...+.+|++ +.||.++.|. ++.||++|.||+++++
T Consensus 130 ~~~~I~~~~~i~~~~~Ig~~------------------~~Ig~~~~i~~~~~Ig~~~~Igagsvv 176 (194)
T 3bfp_A 130 EFSHVSVGAKCAGNVKIGKN------------------CFLGINSCVLPNLSLADDSILGGGATL 176 (194)
T ss_dssp TTCEECTTCEECTTCEECTT------------------CEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CCCEECCCCEECCCcEECCC------------------CEEcCCCEECCCCEECCCCEECCCCEE
Confidence 55555555555554445544 5555555553 4555555555555555
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-10 Score=103.14 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=16.9
Q ss_pred eeEEcCCcEECCCCEEec--eEEECCc
Q 013483 337 HSVVGIRSRINANVHLKD--TMMLGAD 361 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~--~~~~~~~ 361 (442)
++.||+++.|++++.|.+ .+.+|++
T Consensus 76 ~v~IG~~~~I~~~~~i~~~~~i~IG~~ 102 (195)
T 3nz2_A 76 TIRIGDHTFINMNVVMLDGAPITIGDH 102 (195)
T ss_dssp TEEECTTCEECTTEEEECSSCEEECTT
T ss_pred CeEECCCcEECcCCEEecCceEEECCC
Confidence 567777777777777743 3566665
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=99.08 E-value=4.2e-10 Score=105.34 Aligned_cols=81 Identities=15% Similarity=0.227 Sum_probs=49.5
Q ss_pred eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee--------
Q 013483 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-------- 390 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-------- 390 (442)
++.||+++.|+ .+.| .++.||++|.|..++.++ +.+|++ |.|+++|.|..
T Consensus 196 GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~ig--v~IGdn------------------v~IgpGa~IgG~~~~~~~~ 255 (347)
T 3r5d_A 196 GAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAG--VFVGKG------------------SDLGGGCSTMGTLSGGGNI 255 (347)
T ss_dssp TEEECTTEEECTTCEECTTEEESSSEEECSEECTT--CEECTT------------------EEECTTCEECC------CC
T ss_pred CCEECCCCEECCCCEECCCCEECCCcEEcCCceEe--EEECCC------------------CEECCCCEEccccCCCCcc
Confidence 35566666666 3333 245556666555554443 556665 77777777753
Q ss_pred -eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 391 -CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 391 -~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
++||++|.||+|++| . .+||+++.||+|++|
T Consensus 256 ~V~IGdnv~IGAnAtI--G------VtIGd~~iIGAGSVV 287 (347)
T 3r5d_A 256 VISVGEGCLIGANAGI--G------IPLGDRNIVEAGLYI 287 (347)
T ss_dssp CCEECTTCEECTTCEE--C------SCBCTTCEECTTCEE
T ss_pred ceEECCCCEECCCCEE--e------eEECCCCEECCCCEE
Confidence 788888888888888 2 345555555555333
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.07 E-value=3e-10 Score=114.00 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=65.4
Q ss_pred cccCCCCcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhh
Q 013483 294 SFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVAS 371 (442)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~ 371 (442)
..+++.+.+.+.+.|++++.| +++.|.++.||++|.|+ .+.|.+++||++|.|++++.|.+ +++|++
T Consensus 280 a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~g-v~IGd~---------- 348 (496)
T 3c8v_A 280 ASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIIN-AHLGDM---------- 348 (496)
T ss_dssp CEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEEES-EEEEET----------
T ss_pred cEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCCCEECCCcEEcC-ceECCC----------
Confidence 344555555556666777776 56666677788888887 67777788888888888887776 344544
Q ss_pred hhcCCCcceEeCCCcEee-e----eEeCCCcEECCCeEEc
Q 013483 372 LLAEGRVPVGIGENTKIK-E----CIIDKNARIGKNVIIA 406 (442)
Q Consensus 372 ~~~~~~~~~~i~~~~~i~-~----~~ig~~~~ig~~~~~~ 406 (442)
|.||++|.|. + ++||++|.||+++++.
T Consensus 349 --------v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~ 380 (496)
T 3c8v_A 349 --------IFTGFNSFLQGSESSPLKIGDGCVVMPHTIID 380 (496)
T ss_dssp --------CEECTTCEEECCSSSCEEECTTCEECTTCEEE
T ss_pred --------cEECCCCEEeCCCCcceEECCCCEECCCCEEe
Confidence 7777777776 4 4777777777777774
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-10 Score=108.00 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=55.4
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-----eeEeCCCcEECCCeEEccCCCc
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----ECIIDKNARIGKNVIIANSEGI 411 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-----~~~ig~~~~ig~~~~~~~~~~~ 411 (442)
+++||++|.||++|.|+.++.+|++ +.+++++.+. .++||++|.||+|++|.
T Consensus 183 gvvIG~~~~IG~~v~I~~~vtIG~~------------------~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Il----- 239 (313)
T 3q1x_A 183 GVVIGETAIIGEWCRIYQSVTLGAM------------------HFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVL----- 239 (313)
T ss_dssp TCEECTTCEECSSCEECTTCEEECC------------------CCCCTTCCCCCCSSCSCEECSSCEECTTCEEE-----
T ss_pred ceEECCCcEECCCCEECCCcEEeCC------------------cEECCCceEcCCCccCCEECCCCEECCCCEEC-----
Confidence 4677777777777777777777665 5666666664 34888888888888885
Q ss_pred ccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 412 QEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 412 ~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
...+||++++||+|++| +.+++.+
T Consensus 240 -ggv~IG~~a~IGagsvV~~dVp~gs~v 266 (313)
T 3q1x_A 240 -GNIIVGSHVRIGANCWIDRDVDSNQTV 266 (313)
T ss_dssp -SSCEECSSEEECTTCEECSCBCSSEEC
T ss_pred -CCcEECCCCEECCCCEECCCcCCCCEE
Confidence 35678888999888887 5566655
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-09 Score=98.20 Aligned_cols=92 Identities=13% Similarity=0.170 Sum_probs=63.4
Q ss_pred eEEcCCCEEe-ceEEe----eeEEcCCcEECCCCEEe---ceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee---
Q 013483 322 SIISHGSFIT-SSFIE----HSVVGIRSRINANVHLK---DTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE--- 390 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~--- 390 (442)
+.||++|.|+ .+.+. +++||++|.|++++.+. ..+.+|++ |.|+++|.|.+
T Consensus 59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~------------------~~Ig~~~~I~~~~~ 120 (215)
T 2wlg_A 59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKD------------------CMLAHGYEIRNTDM 120 (215)
T ss_dssp EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTT------------------CEECTTEEEESCCS
T ss_pred EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCC------------------CEEcCCEEEECCCC
Confidence 7788888888 45553 27888888888755443 45666765 77777777764
Q ss_pred -----------------eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEEc
Q 013483 391 -----------------CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVIT 437 (442)
Q Consensus 391 -----------------~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v~ 437 (442)
++||++|.||+++++.. ..+||+++.|+++++| ++++++++
T Consensus 121 h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~------gv~Ig~~~vIgagsvV~~~vp~~~i~~ 181 (215)
T 2wlg_A 121 HPIYSLENGERINHGKDVIIGNHVWLGRNVTILK------GVCIPNNVVVGSHTVLYKSFKEPNCVI 181 (215)
T ss_dssp SCEEETTTCBBCCCCCCEEECTTCEECTTCEECT------TCEECSSCEECTTCEECSCCCCCSCEE
T ss_pred cccccccccccccCCCCeEECCCcEECCCCEECC------CCEECCCCEECCCCEEcCccCCCeEEE
Confidence 36777777777777653 5577788888888776 55666555
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4.3e-10 Score=100.27 Aligned_cols=77 Identities=26% Similarity=0.322 Sum_probs=56.4
Q ss_pred eeEEcCCcEECCCCEEece--EEECCccccchhhhhhhhcCCCcceEeCCCcEee-------------------eeEeCC
Q 013483 337 HSVVGIRSRINANVHLKDT--MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------------------ECIIDK 395 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-------------------~~~ig~ 395 (442)
++.||++|.|++++.|.++ +.+|++ |.||++|.|. .++||+
T Consensus 74 ~~~IG~~~~I~~~~~i~~~~~v~IG~~------------------v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~ 135 (199)
T 3ftt_A 74 NVKLGKNVYVNTNCYFMDGGQITIGDN------------------VFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGS 135 (199)
T ss_dssp TEEECSSEEECTTEEEECSSCEEECSS------------------EEECTTCEEECEECCSSHHHHHTTEEEECCEEECS
T ss_pred CcEECCCeEECCCeEEecCCEEEECCC------------------CEECCCCEEecCCCcCccccccccceecCCeEEcC
Confidence 6899999999999999654 788887 8899999883 335666
Q ss_pred CcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEEc
Q 013483 396 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVIT 437 (442)
Q Consensus 396 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v~ 437 (442)
+|.||.+++|. ..++||+++.||+|++| |.+++++.
T Consensus 136 ~v~IG~~~~I~------~gv~IG~~~vIgagsvV~~dvp~~~v~~ 174 (199)
T 3ftt_A 136 NTWFGGHVAVL------PGVTIGEGSVIGAGSVVTKDIPPHSLAV 174 (199)
T ss_dssp SEEECTTCEEC------TTCEECTTCEECTTCEECSCBCTTEEEE
T ss_pred CcEEcCCCEEC------CCCEECCCCEECCCCEECcccCCCCEEE
Confidence 66666666665 35678888888888777 55555443
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.7e-09 Score=99.18 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=28.6
Q ss_pred eEeCCCcEeee---------eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-EcCCcEEcC
Q 013483 380 VGIGENTKIKE---------CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-ILKNSVITD 438 (442)
Q Consensus 380 ~~i~~~~~i~~---------~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-i~~~~~v~~ 438 (442)
|.|+++|.|.. +.||++|.||+|++| ...+.+.++||.|+.|..++.| +.++.++.+
T Consensus 214 v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkdt~I~~~~g~~v~a 280 (332)
T 3fsy_A 214 SDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL--GISLGDDCVVEAGLYVTAGTRVTMPDSNSVKA 280 (332)
T ss_dssp CEECTTCEECSBCC---CCBCEECTTCEECTTCEE--CSCBCSSCEECTTCEECTTCEEECTTSCEEEG
T ss_pred CEECCCCEEcCCCCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCEEEeCCCCEEEh
Confidence 55555555542 666666666666666 3333333344444444444333 334444444
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=99.02 E-value=5.1e-10 Score=105.75 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=18.4
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEcc
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~ 407 (442)
|.||++|.|. ++.||++|.||+|+++..
T Consensus 230 v~IGaga~Ilggv~IG~~a~IGagsvV~~ 258 (313)
T 3q1x_A 230 VTIGTGAKVLGNIIVGSHVRIGANCWIDR 258 (313)
T ss_dssp CEECTTCEEESSCEECSSEEECTTCEECS
T ss_pred CEECCCCEECCCcEECCCCEECCCCEECC
Confidence 6666666664 567777777777776643
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-09 Score=95.67 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=36.9
Q ss_pred cccCccCCCceecCCce-eeeEEcCCCEEe-ceEEe---eeEEcCCcEECCCCEEeceEEECC
Q 013483 303 YTSRRNLPPSKIDDSKI-VDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGA 360 (442)
Q Consensus 303 ~~~~~~~~~~~i~~~~i-~~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~ 360 (442)
...+.+.+|... .+ .++.||+++.|+ ++.+. .++||++|.|++++.|.......+
T Consensus 60 g~~~~I~~p~~~---~ig~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~ 119 (195)
T 3nz2_A 60 GHKSCVQPPFHC---EFGKTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLD 119 (195)
T ss_dssp CTTCEECSSEEE---SCSTTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSS
T ss_pred CCCcEEcCCeEE---EeCCCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCcc
Confidence 344555665433 11 157778888887 56662 359999999999999988765544
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-09 Score=96.00 Aligned_cols=76 Identities=24% Similarity=0.267 Sum_probs=54.5
Q ss_pred eeEEcCCcEECCCCEEec--eEEECCccccchhhhhhhhcCCCcceEeCCCcEeee-------------------eEeCC
Q 013483 337 HSVVGIRSRINANVHLKD--TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-------------------CIIDK 395 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-------------------~~ig~ 395 (442)
++.||+++.|++++.|.+ .+.+|++ |.|+++|.|.+ ++||+
T Consensus 78 ~v~IG~~~~I~~~~~i~~~~~v~IG~~------------------~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~ 139 (190)
T 3hjj_A 78 NIHVGKSFFANFNCVILDVCEVRIGDH------------------CMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGN 139 (190)
T ss_dssp TEEECTTCEECTTCEEECSSCEEECTT------------------CEECTTCEEECEECCSSHHHHTSSEEEECCEEECT
T ss_pred ceEECCceeeCCCeEEEeCCCeEECCc------------------eEEcCCcEEecCCccCchhhccccccccCCeEECC
Confidence 689999999999999986 6788887 88888888832 45666
Q ss_pred CcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 396 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 396 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
+|.||++++|. ...+||+++.||+|++| |.+++++
T Consensus 140 ~v~IG~~~~I~------~gv~IG~~~vIgagsvV~~dvp~~~v~ 177 (190)
T 3hjj_A 140 NVWVGGGAIIN------PGVSIGDNAVIASGAVVTKDVPNNVVV 177 (190)
T ss_dssp TCEECTTCEEC------TTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred CCEECCCCEEC------CCCEECCCCEECCCCEECcccCCCCEE
Confidence 66666666554 35567777777777666 4444444
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.4e-10 Score=102.57 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=26.4
Q ss_pred eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEEc
Q 013483 390 ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVIT 437 (442)
Q Consensus 390 ~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v~ 437 (442)
+++||++|.||.+++|.. .++||+++.||+|++| |.+++++.
T Consensus 119 ~v~IG~~v~IG~~a~I~~------gv~IG~gavIgagsvV~~dVp~~~vv~ 163 (220)
T 4hur_A 119 DIEIGNDVWIGRDVTIMP------GVKIGDGAIIAAEAVVTKNVAPYSIVG 163 (220)
T ss_dssp CEEECSSCEECTTCEECT------TCEECTTCEECTTCEECSCBCTTEEEE
T ss_pred CeEECCCcEECCCCEEeC------CCEECCCCEEcCCCEEcccCCCCcEEe
Confidence 466777777777777653 3566777777777666 44555443
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=7.7e-10 Score=98.50 Aligned_cols=76 Identities=28% Similarity=0.342 Sum_probs=50.8
Q ss_pred eeEEcCCcEECCCCEEec--eEEECCccccchhhhhhhhcCCCcceEeCCCcEee-------------------eeEeCC
Q 013483 337 HSVVGIRSRINANVHLKD--TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------------------ECIIDK 395 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-------------------~~~ig~ 395 (442)
++.||+++.|++++.|.+ .+.+|++ |.||++|.|. .++||+
T Consensus 75 ~i~IG~~~~I~~~~~i~~~~~i~IG~~------------------v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd 136 (203)
T 1krr_A 75 NIHIGRNFYANFNLTIVDDYTVTIGDN------------------VLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGN 136 (203)
T ss_dssp TEEECSSCEECSCEEEECSSCEEECSS------------------CEECSSCEEESEECCSSTTTCTTCCBEECCEEECT
T ss_pred CeEECCeeEECCccEEecccceEECCC------------------CEECCCCEEecCCcccchhhcccCceeCCCcEECC
Confidence 678888888888888865 3677776 7777777763 245555
Q ss_pred CcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 396 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 396 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
+|.||.+++|. ..++||++++||+|++| |++++++
T Consensus 137 ~v~IG~~a~I~------~gv~IG~~~vIgagsvV~~dvp~~~vv 174 (203)
T 1krr_A 137 NVWIGSHVVIN------PGVTIGDNSVIGAGSIVTKDIPPNVVA 174 (203)
T ss_dssp TCEECTTCEEC------TTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred CeEECCCCEEe------CCeEECCCCEECCCCEECCCcCCCcEE
Confidence 55555555554 35677777777777766 4555543
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.96 E-value=9.5e-10 Score=103.67 Aligned_cols=90 Identities=19% Similarity=0.187 Sum_probs=55.1
Q ss_pred eeEEcCCCEEeceEEeeeEE--cCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee---------
Q 013483 321 DSIISHGSFITSSFIEHSVV--GIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK--------- 389 (442)
Q Consensus 321 ~~~i~~~~~i~~~~i~~~~i--g~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~--------- 389 (442)
++.|++++.|+. +++| |.+++|++++.|++++.++.+ |.||+++...
T Consensus 190 gv~I~p~a~IG~----~v~I~hg~gvvIG~~~~IG~~v~I~~g------------------vtIg~~~~~~~~~g~~i~~ 247 (310)
T 3f1x_A 190 GIDIHPGAQIGH----HFTIDHGTGVVIGATSIIGNNVKLYQG------------------VTLGAKSFPLDNNGNPIKG 247 (310)
T ss_dssp SCEECTTCEECS----SCEEESCTTCEECTTCEECSSCEEETT------------------CEEECC-------------
T ss_pred CcEECCCCEECC----CcEECCCCCeEECCceEEcCCCEECCC------------------CEECCCccccccccccccC
Confidence 345555555553 4455 556666666666665555544 5555554221
Q ss_pred ---eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEEcC
Q 013483 390 ---ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVITD 438 (442)
Q Consensus 390 ---~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v~~ 438 (442)
.++||++|.||+|++|. ..++||++++||+|++| |++++++..
T Consensus 248 ~~~~~~IGd~V~IGaga~Il------~gv~IGd~a~IGagsvV~~dVp~~svv~G 296 (310)
T 3f1x_A 248 IPRHPILEDDVIVYSNATIL------GRVTIGKGATVGGNIWVTENVPAGSRIVQ 296 (310)
T ss_dssp -CCSCEECTTCEECTTCEEE------SSCEECTTCEECSSCEECSCBCTTCEECC
T ss_pred CCCCCEECCCcEEcCCCEEC------CCcEECCCCEECCCCEECCccCCCcEEEC
Confidence 23677777777777776 35678888888888877 666666654
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.9e-09 Score=107.72 Aligned_cols=89 Identities=13% Similarity=0.281 Sum_probs=59.0
Q ss_pred eEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee--------eE
Q 013483 322 SIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE--------CI 392 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~--------~~ 392 (442)
+.|++++.|+ .+.+++++||++|.|+..+.|+++.+ |.+ |.||++|.+-| ++
T Consensus 353 ~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~I-g~~------------------v~IG~g~i~~n~dg~~~~~t~ 413 (501)
T 3st8_A 353 TALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADI-GEY------------------SNIGASSVFVNYDGTSKRRTT 413 (501)
T ss_dssp CEECTTCEEEETEEEESCEECTTCEEEESCEEESEEE-CSS------------------CEECTTCEEECBCSSSBCCEE
T ss_pred cEEccccccCCeEEEccceecCCcEEeccceecCceE-cCC------------------CEECCCEEEEcccCCcccCCE
Confidence 5566666666 44556666666666666666665433 433 66666666632 56
Q ss_pred eCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcE
Q 013483 393 IDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSV 435 (442)
Q Consensus 393 ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~ 435 (442)
||++|.||.++.+. ..++||++++||+|++| |.+++.
T Consensus 414 IGd~~~iG~~~~l~------~~v~Ig~~~~i~ags~v~~dvp~~~l 453 (501)
T 3st8_A 414 VGSHVRTGSDTMFV------APVTIGDGAYTGAGTVVREDVPPGAL 453 (501)
T ss_dssp ECTTCEECTTCEEE------SSEEECTTCEECTTCEECSCBCTTCE
T ss_pred ECCCcEECCCCEEc------CCcEECCCCEECCCCEECcccCCCCe
Confidence 66666666665554 57899999999999998 888875
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-09 Score=102.32 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=17.8
Q ss_pred EEecceeeecCC--hHHHHHHhhhhh
Q 013483 264 YLFNDYWEDIGT--IRSFFEANLALT 287 (442)
Q Consensus 264 ~~~~g~~~di~t--~~~~~~an~~~l 287 (442)
+....+|.+.+. |++|......+.
T Consensus 166 ~l~~~~Wt~~G~~~~~~f~~~~~~l~ 191 (387)
T 2rij_A 166 LLSNVAWSDDKPIELEYLRANEMRLK 191 (387)
T ss_dssp HSCCEEEETTEEECHHHHHHHHHHHH
T ss_pred cCceeeeccCcccCHHHHHHHHHHHH
Confidence 334568999988 788888877765
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-09 Score=97.40 Aligned_cols=29 Identities=31% Similarity=0.495 Sum_probs=14.7
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccC
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANS 408 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~ 408 (442)
+.||++|.|+ +|+|.++++||++++|+..
T Consensus 120 v~IG~~v~IG~~a~I~~gv~IG~gavIgag 149 (220)
T 4hur_A 120 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAE 149 (220)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTT
T ss_pred eEECCCcEECCCCEEeCCCEECCCCEEcCC
Confidence 4555555554 4555555555555555443
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.9e-09 Score=92.47 Aligned_cols=51 Identities=10% Similarity=0.056 Sum_probs=33.7
Q ss_pred cccCccCCCceecCCceeeeEEcCCCEEe-ceEEe---eeEEcCCcEECCCCEEece
Q 013483 303 YTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDT 355 (442)
Q Consensus 303 ~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~ 355 (442)
...+.+.+++.+... .++.||+++.|+ .+.+. ..+||++|.|++++.|...
T Consensus 60 g~~~~I~~~~~~~~g--~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~ 114 (188)
T 3srt_A 60 GKQINVEQNIRCDYG--YNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTA 114 (188)
T ss_dssp CSCEEECSCEEESSS--TTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECE
T ss_pred CCCCEEcCCEEEEeC--CCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeC
Confidence 445566666665210 257777777777 55553 4588999999998888554
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-09 Score=95.09 Aligned_cols=70 Identities=26% Similarity=0.294 Sum_probs=54.7
Q ss_pred eeeEEcCCcEECCCCEEec--eEEECCccccchhhhhhhhcCCCcceEeCCCcEe-------------------eeeEeC
Q 013483 336 EHSVVGIRSRINANVHLKD--TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI-------------------KECIID 394 (442)
Q Consensus 336 ~~~~ig~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-------------------~~~~ig 394 (442)
.++.||+++.|++++.|.+ .+.+|++ |.||++|.| ..++||
T Consensus 75 ~~~~IG~~~~i~~~~~i~~~~~i~IG~~------------------~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG 136 (188)
T 3srt_A 75 YNIHVGENFFANYDCIFLDVCKIEIGDN------------------VMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIG 136 (188)
T ss_dssp TTEEECTTEEECTTEEEECSSCEEECSS------------------CEECTTCEEECEECCSSHHHHHTTEEEECCEEEC
T ss_pred CCeEECCcccccCceEEecCCceEECCe------------------eEECCCcEEeeCCccCchhhccccceECCCcEEC
Confidence 3789999999999999976 5677877 888888888 356777
Q ss_pred CCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 395 KNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 395 ~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
++|.||.+++|.. ..+||++++||+|++|
T Consensus 137 ~~v~IG~~~~I~~------gv~IG~~~vIgagsvV 165 (188)
T 3srt_A 137 DNVWIGGGVIITP------GITIGDNVVIGAGSVV 165 (188)
T ss_dssp SSCEECTTCEECT------TCEECSSEEECTTCEE
T ss_pred CCcEEcCCCEECC------CcEECCCCEECCCCEE
Confidence 7777777777753 4678888888888777
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.4e-09 Score=93.69 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=56.4
Q ss_pred cccCccCCCceec-CCceeeeEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCC
Q 013483 303 YTSRRNLPPSKID-DSKIVDSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGR 377 (442)
Q Consensus 303 ~~~~~~~~~~~i~-~~~i~~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (442)
..++.+.+++.+. + .++.||++|.|+ .+.| ..++||++|.|++++.|..+....+. ........-.
T Consensus 58 g~~~~i~~~~~~~~g---~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~------~~~~~~~~~~ 128 (199)
T 3ftt_A 58 TDNVSISIPFDTDYG---WNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNF------HHRNEGFEKA 128 (199)
T ss_dssp CSSEEECSSEEESSS---TTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSH------HHHHTTEEEE
T ss_pred CCCeEEeCCEEEEec---CCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCcc------ccccccceec
Confidence 3345566666652 2 156777777777 5666 24799999999999999665432211 0000000001
Q ss_pred cceEeCCCcEee-eeEeCCCcEECCCeEEccCCCc
Q 013483 378 VPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGI 411 (442)
Q Consensus 378 ~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~ 411 (442)
.|+.||++|+|+ +|+|.++++||++++|+....+
T Consensus 129 ~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV 163 (199)
T 3ftt_A 129 GPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVV 163 (199)
T ss_dssp CCEEECSSEEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEE
Confidence 126666666665 5666666666666666554433
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=7.8e-09 Score=91.36 Aligned_cols=98 Identities=20% Similarity=0.224 Sum_probs=56.7
Q ss_pred cCccCCCceec-CCceeeeEEcCCCEEe-ceEEe---eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcc
Q 013483 305 SRRNLPPSKID-DSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVP 379 (442)
Q Consensus 305 ~~~~~~~~~i~-~~~i~~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (442)
++.+.+++.+. + .++.||+++.|+ .+.+. .++||++|.|++++.|..+....+.. ..........|
T Consensus 64 ~~~I~~~~~~~~g---~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~------~~~~~~~~~~~ 134 (190)
T 3hjj_A 64 KAQINPDFRCDYG---YNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPV------ERNSGKEYGKP 134 (190)
T ss_dssp CCEECSSCEESSS---TTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSHH------HHTSSEEEECC
T ss_pred CcEECCCEEEEeC---CceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCchh------hccccccccCC
Confidence 45566666551 2 157777777777 56663 67899999999999997654433210 00000000112
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCCCc
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGI 411 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~ 411 (442)
+.||++|+|+ +|+|.++++||++|+|+....+
T Consensus 135 v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV 167 (190)
T 3hjj_A 135 VKIGNNVWVGGGAIINPGVSIGDNAVIASGAVV 167 (190)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence 6666666665 5666666666666666554433
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-09 Score=94.62 Aligned_cols=79 Identities=23% Similarity=0.267 Sum_probs=60.7
Q ss_pred eeEEcCCcEECCCCEEe--ceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-------------------eeEeCC
Q 013483 337 HSVVGIRSRINANVHLK--DTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------------------ECIIDK 395 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-------------------~~~ig~ 395 (442)
++.||+++.|++++.|. ..+.+|++ |.|+++|.|. .++||+
T Consensus 74 ~v~IG~~~~i~~~~~i~~~~~i~IG~~------------------v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd 135 (185)
T 2p2o_A 74 NIHVGENFFMNFDGVILDVCEVRIGDH------------------CFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGH 135 (185)
T ss_dssp TEEECTTEEECSSEEEECSSCEEECTT------------------CEECTTCEEECEECCSSHHHHHTCCBEECCEEECS
T ss_pred CEEECCeeEEcCCeEEEeccceEECCC------------------cEEeCCCEEEcCCCcCChhhcccCccccCCeEEcC
Confidence 67889999999998885 56778877 8888888883 467777
Q ss_pred CcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEEcCC
Q 013483 396 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVITDG 439 (442)
Q Consensus 396 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v~~~ 439 (442)
+|.||+++++. ..++||++++||+|++| |+++++++++
T Consensus 136 ~v~IG~~~~I~------~gv~IG~~~vIgagsvV~~~vp~~~vv~G~ 176 (185)
T 2p2o_A 136 NVWIGGRAVIN------PGVTIGDNAVIASGAVVTKDVPANAVVGGN 176 (185)
T ss_dssp SCEECTTCEEC------TTCEECTTCEECTTCEECSCBCTTEEEEET
T ss_pred CeEECCCCEEC------CCCEECCCCEECCCCEECCCCCCCcEEEcc
Confidence 77777777775 35688999999999887 6666666544
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.90 E-value=6.5e-09 Score=91.34 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=27.0
Q ss_pred eeEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEec
Q 013483 321 DSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKD 354 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~ 354 (442)
++.||+++.+. .+.+ .+++||++|.|++++.|..
T Consensus 74 ~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~ 111 (185)
T 2p2o_A 74 NIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYT 111 (185)
T ss_dssp TEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEEC
T ss_pred CEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEc
Confidence 56777787777 5555 4689999999999999954
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.87 E-value=3.4e-09 Score=92.86 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=57.9
Q ss_pred eeEEcCCcEECCCCEEe--ceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-------------------eeEeCC
Q 013483 337 HSVVGIRSRINANVHLK--DTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------------------ECIIDK 395 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-------------------~~~ig~ 395 (442)
++.||+++.|++++.|. ..+.+|++ |.|+++|.|. +++||+
T Consensus 72 ~v~IG~~~~I~~~~~i~~~~~i~IG~~------------------v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~ 133 (182)
T 1ocx_A 72 NIFLGNNFFANFDCVMLDVCPIRIGDN------------------CMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGN 133 (182)
T ss_dssp TEEECSSEEECSSEEEECSSCEEECTT------------------CEECTTCEEECEECCSSHHHHTTTCBEECCEEECT
T ss_pred CEEECCCcEEeCCeEEEeccceEEcCC------------------cEEeCCcEEEeCCCccChhhcccCccccCCeEEeC
Confidence 67889999999999885 46777876 8888888882 466677
Q ss_pred CcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEEcC
Q 013483 396 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVITD 438 (442)
Q Consensus 396 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v~~ 438 (442)
+|.||++++|. ..++||++++||+|++| |+++++++.
T Consensus 134 ~v~Ig~~a~I~------~gv~IG~~~vIgagsvV~~dip~~~vv~G 173 (182)
T 1ocx_A 134 NVWIGGRAVIN------PGVTIGDNVVVASGAVVTKDVPDNVVVGG 173 (182)
T ss_dssp TCEECTTCEEC------TTCEECTTCEECTTCEECSCBCSSEEEET
T ss_pred CeEECCCCEEC------CCcEECCCCEECCCCEECCcCCCCcEEEc
Confidence 77777776665 35678888888888777 555555543
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-08 Score=89.76 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=51.3
Q ss_pred cCccCCCceec-CCceeeeEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcc
Q 013483 305 SRRNLPPSKID-DSKIVDSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVP 379 (442)
Q Consensus 305 ~~~~~~~~~i~-~~~i~~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (442)
.+.+.+++... + .++.||+++.|. .+.+ ..++||++|.|++++.|.....--. . .......+...|
T Consensus 58 ~~~I~~~~~~~~g---~~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~-----~-~~~~~~~~~~~~ 128 (182)
T 1ocx_A 58 EAYIEPTFRCDYG---YNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPID-----P-VARNSGAELGKP 128 (182)
T ss_dssp SEEECSCEEESSS---TTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSS-----H-HHHTTTCBEECC
T ss_pred CEEEeCCEEEEeC---CCEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCCCccC-----h-hhcccCccccCC
Confidence 34556664431 1 156777777777 5555 3579999999999999964321100 0 000000000112
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCC
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSE 409 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~ 409 (442)
+.||++|+|+ +|+|.++++||++++|+...
T Consensus 129 v~IG~~v~Ig~~a~I~~gv~IG~~~vIgags 159 (182)
T 1ocx_A 129 VTIGNNVWIGGRAVINPGVTIGDNVVVASGA 159 (182)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred eEEeCCeEECCCCEECCCcEECCCCEECCCC
Confidence 5666666665 56655566666665555433
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-08 Score=90.01 Aligned_cols=102 Identities=20% Similarity=0.160 Sum_probs=61.4
Q ss_pred cccCccCCCceec-CCceeeeEEcCCCEEe-ceEEe---eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCC
Q 013483 303 YTSRRNLPPSKID-DSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGR 377 (442)
Q Consensus 303 ~~~~~~~~~~~i~-~~~i~~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (442)
..++.|.+++.+. + .++.||+++.|+ .+.+. .++||++|.|++++.|.....-.+. ..+ ....+-.
T Consensus 59 g~~~~I~~~~~~~~g---~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~-~~~-----~~~~~~~ 129 (203)
T 1krr_A 59 GENAWVEPPVYFSYG---SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHH-ELR-----KNGEMYS 129 (203)
T ss_dssp CSSCEECSCEEESCS---TTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSST-TTC-----TTCCBEE
T ss_pred CCCcEEcCCeEEEeC---CCeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccch-hhc-----ccCceeC
Confidence 4455666665541 1 267888888888 66663 3799999999999998754321110 000 0000011
Q ss_pred cceEeCCCcEee-eeEeCCCcEECCCeEEccCCCccc
Q 013483 378 VPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQE 413 (442)
Q Consensus 378 ~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~ 413 (442)
.|+.||++|+|+ +|+|.++++||++++|+....+.+
T Consensus 130 ~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~ 166 (203)
T 1krr_A 130 FPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTK 166 (203)
T ss_dssp CCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred CCcEECCCeEECCCCEEeCCeEECCCCEECCCCEECC
Confidence 237777777776 677777777777777766544433
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.5e-09 Score=100.70 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=7.4
Q ss_pred eEeCCCcEECCCeE
Q 013483 391 CIIDKNARIGKNVI 404 (442)
Q Consensus 391 ~~ig~~~~ig~~~~ 404 (442)
++||++|.||++++
T Consensus 291 VvIGdnv~IGagAv 304 (387)
T 2rij_A 291 ISVGKACLLGANSV 304 (387)
T ss_dssp CEECTTCEECTTCE
T ss_pred eEEeCCCEECCCCc
Confidence 45555555555554
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.6e-09 Score=97.12 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=32.1
Q ss_pred eEeCCCcEeee---------eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 380 VGIGENTKIKE---------CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 380 ~~i~~~~~i~~---------~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
|.|++++.|++ ++||++|.||++++|.. ..+||+++.||+|++| |.+++++
T Consensus 197 v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~------gv~IG~~a~IGagsvV~kdVp~~svv 259 (287)
T 3mc4_A 197 VSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILG------NIQVGQCSKIAAGSVVLKSVPHNVTV 259 (287)
T ss_dssp CEEETTCEEEC-----CCCSCEECTTCEECTTCEEES------SCEECTTCEECTTCEECSCBCTTEEE
T ss_pred CEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECC------CcEECCCCEECCCCEEccccCCCCEE
Confidence 45555555543 57777777777777763 4567777777777766 4444443
|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=98.81 E-value=6e-08 Score=96.64 Aligned_cols=357 Identities=13% Similarity=0.108 Sum_probs=182.0
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeec-Cccceehhhhhhhhhc----CC-cEEEEEeccC-hhhHHHHHHhhcc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCINS----GI-NKVYILTQYN-SASLNRHLARAYN 78 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~-g~~pli~~~l~~l~~~----gi-~~i~iv~~~~-~~~i~~~~~~~~~ 78 (442)
-.++.+|+||||.||||+ ...||.++|+. ++ ++++..++++.+. |. -..+|.+... .+...+++++...
T Consensus 125 l~kvavvlLaGGlGTRLG---~~~PK~~i~V~sgk-tflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~~~ 200 (528)
T 3r3i_A 125 LNKLVVVKLNGGLGTSMG---CKGPKSLIGVRNEN-TFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNH 200 (528)
T ss_dssp CTTEEEEEECCCBCTTTT---CSSBGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGGTT
T ss_pred cCceEEEEeCCCCccccC---CCCCccceecCCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhcCc
Confidence 478999999999999997 78999999998 66 9999999998775 43 3556666654 4577777765432
Q ss_pred CCCCccc-CCceEEEeccccc---C-------CcCCCccccChHHHHHHh--hhhhcCCCCCccCeEEEEcCCeeeecCH
Q 013483 79 YGSGVTF-GDGCVEVLAATQT---P-------GEAGKRWFQGTADAVRQF--HWLFEDPRNKVIEDVLILSGDHLYRMDY 145 (442)
Q Consensus 79 ~~~~~~~-~~~~v~i~~~~~~---~-------~~~~~~~~~G~~~al~~~--~~~l~~~~~~~~~~~lv~~gD~i~~~~l 145 (442)
++....+ ....+..+..+.. + ...-.-.|.|.|+..... ...++++...+.+++.+.+.|.+...--
T Consensus 201 fg~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vD 280 (528)
T 3r3i_A 201 CRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVD 280 (528)
T ss_dssp SSCCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCC
T ss_pred cCCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccccC
Confidence 3221111 0000000000000 0 000011345555443332 2233333223457999999999543222
Q ss_pred HHHHHHHHHc----CCcEEEEEeecCCCcCCcccEEEEcCCCceEEEEeCCCccccccccccccccccccccccccccee
Q 013483 146 MDFVQNHRQS----GADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIA 221 (442)
Q Consensus 146 ~~~l~~~~~~----~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 221 (442)
..++..+... ++++.+-+.+...++ +.-|.++. .+|+. .+.|...-++... + .... . ..-.+.
T Consensus 281 p~~Lg~~~~~~~~~~~d~~~kVv~Kt~~d-ek~Gvl~~-~dGk~-~vvEyseip~e~~---~-----~~~g-~-~~f~~~ 347 (528)
T 3r3i_A 281 LYILNHLMNPPNGKRCEFVMEVTNKTRAD-VKGGTLTQ-YEGKL-RLVEIAQVPKAHV---D-----EFKS-V-SKFKIF 347 (528)
T ss_dssp HHHHHHHSSCSSSCCCSEEEEECCCCTTC-CSSCEEEC-SSSSC-EEECTTSSCGGGT---T-----TSSC-S-SSCCCC
T ss_pred HHHHHHHHhcccccCCcEEEEEeEccccC-CcccEEEE-ECCeE-EEEEecCCChhHh---h-----ccCC-c-ccCCeE
Confidence 2456666665 788887766544322 33455554 35554 3445444332110 0 0001 1 122456
Q ss_pred eeeEEEEeHHHHHHHHhhhCCCCc-------------ccc-cchhhhcccc-cceEEEEec-ceeeecCChHHHHHHhhh
Q 013483 222 SMGVYLFKKEILLNLLRWRFPTAN-------------DFG-SEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLA 285 (442)
Q Consensus 222 ~~Giy~~~~~~l~~~l~~~~~~~~-------------~~~-~~~l~~~i~~-~~i~~~~~~-g~~~di~t~~~~~~an~~ 285 (442)
++....|+-+.+.++++....... -+. +.++-.+++- .+..++.++ ..|.-+.+..|++-...+
T Consensus 348 Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~~~viqlEt~igd~i~~f~~~~~i~VpR~rF~PvKn~sdLll~~Sd 427 (528)
T 3r3i_A 348 NTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPVKTTSDLLLVMSN 427 (528)
T ss_dssp EEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSSSCEEEEEBCSTTCSTTSSSCCCEECCGGGCCBCCSHHHHHHHHST
T ss_pred EEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCCCCEEEeHHHHHHHHHhccCcEEEEEehHHcccccchHHHHHHhcc
Confidence 889999999999888875311100 010 1122222221 122223332 348888999999877665
Q ss_pred hhcCCCCccccCCCC--cccccCccCCCceecCCceee--eEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCc
Q 013483 286 LTAHPPMFSFYDATK--PIYTSRRNLPPSKIDDSKIVD--SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 361 (442)
Q Consensus 286 ~l~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~i~~--~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~ 361 (442)
+.....+.-...+.. +..+.+..++. + ..|.+ ..+..--.+ ....+-+|-.++..|.++++...+++-++
T Consensus 428 ly~l~~g~l~~~~~r~~~~~P~v~L~~~--~--~~v~~f~~rf~~iP~l--~~~~~LtV~Gdv~fg~~v~l~G~v~i~~~ 501 (528)
T 3r3i_A 428 LYSLNAGSLTMSEKREFPTVPLVKLGSS--F--TKVQDYLRRFESIPDM--LELDHLTVSGDVTFGKNVSLKGTVIIIAN 501 (528)
T ss_dssp TSEEETTEEECCSSCSSCCCCEEEECTT--S--CSHHHHHHHCSSCCEE--EEEEEEEEESEEECCTTCEEEEEEEEECC
T ss_pred eeEeeCCeEEecccccCCCCCEEEeCcc--c--CcHHHHHHhCCCCCCc--ccCCEEEEecceEECCCcEEEEEEEEEcC
Confidence 543222211111111 11112222222 1 11110 111110001 11124566678888888888888888432
Q ss_pred cccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEE
Q 013483 362 FYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARI 399 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~i 399 (442)
++ .+..|-+++++.|.+|-.+.+|
T Consensus 502 -------------~g-~~~~ip~g~~len~~v~g~~~~ 525 (528)
T 3r3i_A 502 -------------HG-DRIDIPPGAVLENKIVSGNLRI 525 (528)
T ss_dssp -------------TT-CEEECCTTCEEEEEEEC-----
T ss_pred -------------CC-CceecCCCCEEeccEEeccccc
Confidence 11 2378999999999988766655
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-08 Score=96.47 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=13.1
Q ss_pred EeCCCcEee-eeEeCCCcEECCCeEEcc
Q 013483 381 GIGENTKIK-ECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 381 ~i~~~~~i~-~~~ig~~~~ig~~~~~~~ 407 (442)
.||++|+|+ +|.|..+++||++++|+.
T Consensus 253 ~IGd~V~IGaga~Il~gv~IGd~a~IGa 280 (310)
T 3f1x_A 253 ILEDDVIVYSNATILGRVTIGKGATVGG 280 (310)
T ss_dssp EECTTCEECTTCEEESSCEECTTCEECS
T ss_pred EECCCcEEcCCCEECCCcEECCCCEECC
Confidence 555555554 444444444444444443
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=94.37 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=52.6
Q ss_pred EEcCCcEEC--CCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee---------eEeCCCcEECCCeEEcc
Q 013483 339 VVGIRSRIN--ANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE---------CIIDKNARIGKNVIIAN 407 (442)
Q Consensus 339 ~ig~~~~i~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~---------~~ig~~~~ig~~~~~~~ 407 (442)
.||+++.|+ .+++|++.+++|++ |.|+++++|++ ++||++|.||+|++|.+
T Consensus 145 ~IG~g~~I~~~~~vvIG~~~~IG~~------------------v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~ 206 (267)
T 1ssq_A 145 KIGHGIMFDHATGIVVGETSVIEND------------------VSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILG 206 (267)
T ss_dssp EECSSCEESSCTTCEECTTCEECTT------------------CEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEES
T ss_pred EECCCEEECCCCceEECCeeEECCC------------------CEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeC
Confidence 445555555 46778877777776 78888888875 57888888888777763
Q ss_pred CCCcccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 408 SEGIQEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
..+||+++.||+|++| |.+++++
T Consensus 207 ------gv~IG~~a~IGagsvV~~dVp~~~~v 232 (267)
T 1ssq_A 207 ------NIEVGKYAKIGANSVVLNPVPEYATA 232 (267)
T ss_dssp ------SCEECTTCEECTTCEECSCBCTTCEE
T ss_pred ------CcEECCCCEECCCCEEccCCCCCCEE
Confidence 4678888888888777 5555544
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-08 Score=94.70 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=17.9
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEc
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIA 406 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~ 406 (442)
|.||++|.|. ++.||++|+||+|+++.
T Consensus 223 v~IGaga~Il~gv~IG~~a~IGagsvV~ 250 (287)
T 3mc4_A 223 VLIGAGAKILGNIQVGQCSKIAAGSVVL 250 (287)
T ss_dssp CEECTTCEEESSCEECTTCEECTTCEEC
T ss_pred CEECCCCEECCCcEECCCCEECCCCEEc
Confidence 5666666664 56677777777777665
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-08 Score=94.10 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=50.2
Q ss_pred EEcCCcEEC--CCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee---------eEeCCCcEECCCeEEcc
Q 013483 339 VVGIRSRIN--ANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE---------CIIDKNARIGKNVIIAN 407 (442)
Q Consensus 339 ~ig~~~~i~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~---------~~ig~~~~ig~~~~~~~ 407 (442)
.||+++.|+ .+++|++.+++|++ |.|+++|+|++ ++||++|.||++++|.+
T Consensus 165 ~IG~gv~I~~g~gvvIG~~~~IG~~------------------v~I~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilg 226 (289)
T 1t3d_A 165 KIGRGIMLDHATGIVVGETAVIEND------------------VSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILG 226 (289)
T ss_dssp EECSSCEECSCTTCEECTTCEECSS------------------CEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEES
T ss_pred EEcCCEEECCCCceEECCCcEECCC------------------CEEcCCcEECCCccccCCCCeEECCCeEECCCCEEec
Confidence 444455554 46777777777776 77777777764 57777777777777753
Q ss_pred CCCcccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 408 SEGIQEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
..+||+++.||+|++| |.+++++
T Consensus 227 ------gv~IG~~a~IGagsvV~~dVp~~s~v 252 (289)
T 1t3d_A 227 ------NIEVGRGAKIGAGSVVLQPVPPHTTA 252 (289)
T ss_dssp ------SCEECTTCEECTTCEECSCBCTTCEE
T ss_pred ------CcEECCCCEECCCCEEccCCCCCCEE
Confidence 5677888888888776 5555544
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-08 Score=91.98 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=23.9
Q ss_pred cCeEE--EEcCCeeeecCHHHHHHHHHHcC
Q 013483 129 IEDVL--ILSGDHLYRMDYMDFVQNHRQSG 156 (442)
Q Consensus 129 ~~~~l--v~~gD~i~~~~l~~~l~~~~~~~ 156 (442)
.+++| ++++|.+...+|.+++.+|...+
T Consensus 19 ~EP~L~~~l~~~IL~~~~l~~aLa~~la~k 48 (267)
T 1ssq_A 19 NEPMLASFFHSTILKHQNLGGALSYLLANK 48 (267)
T ss_dssp HCHHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 47889 99999999999999999887654
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.73 E-value=4.1e-08 Score=91.53 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=24.4
Q ss_pred cCeEE--EEcCCeeeecCHHHHHHHHHHcC
Q 013483 129 IEDVL--ILSGDHLYRMDYMDFVQNHRQSG 156 (442)
Q Consensus 129 ~~~~l--v~~gD~i~~~~l~~~l~~~~~~~ 156 (442)
.+++| ++++|.+...+|.+++.+|...+
T Consensus 39 ~EP~L~~~l~~~IL~~~~l~~aLa~~La~k 68 (289)
T 1t3d_A 39 CEPMLASFYHATLLKHENLGSALSYMLANK 68 (289)
T ss_dssp HCGGGHHHHHHHTTTCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 48999 99999999999999999987654
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.1e-08 Score=98.75 Aligned_cols=70 Identities=20% Similarity=0.286 Sum_probs=58.5
Q ss_pred eEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcc
Q 013483 333 SFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQ 412 (442)
Q Consensus 333 ~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~ 412 (442)
+.++++.||++|.| +++.|.++ ++|++ |.||++|.|.+|+||++|.||+++++.+
T Consensus 320 ~~i~~~~ig~~~~I-~~~~i~~~-~ig~~------------------~~I~~~~~i~~~~i~~~~~i~~~~~i~~----- 374 (420)
T 3brk_X 320 GSAVSSVVSGDCII-SGAALNRS-LLFTG------------------VRANSYSRLENAVVLPSVKIGRHAQLSN----- 374 (420)
T ss_dssp CEEESCEECSSCEE-ESCEEESC-EECTT------------------CEECTTCEEEEEEECTTCEECTTCEEEE-----
T ss_pred cEecCCEECCCCEE-cCCEEeCc-EEcCC------------------CEECCCCEEcceEEcCCCEECCCCEEec-----
Confidence 44568999999999 89999875 55665 9999999999999999999999999963
Q ss_pred cceeeCCCeEEccCcEE
Q 013483 413 EADRSAEGFYIRSGVTV 429 (442)
Q Consensus 413 ~~~~~~~~~~i~~~~~v 429 (442)
++||+++.||+|++|
T Consensus 375 --~~ig~~~~i~~~~~i 389 (420)
T 3brk_X 375 --VVIDHGVVIPEGLIV 389 (420)
T ss_dssp --EEECTTCEECTTCEE
T ss_pred --eEECCCCEECCCCEE
Confidence 567777777777665
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.7e-08 Score=100.08 Aligned_cols=101 Identities=24% Similarity=0.278 Sum_probs=73.8
Q ss_pred cCccCCCceecCCceeeeEEcCCCEEe-ceEEeeeEEcCC-------------------cEECCCCEEeceEEECCcccc
Q 013483 305 SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIR-------------------SRINANVHLKDTMMLGADFYE 364 (442)
Q Consensus 305 ~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~-------------------~~i~~~~~i~~~~~~~~~~~~ 364 (442)
++.|++++.+.++.+.+++||++|.|+ ++.|.++++..+ +.|++++.|+++ ++|++
T Consensus 330 ~~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~-~Ig~~--- 405 (451)
T 1yp2_A 330 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRA-IIDKN--- 405 (451)
T ss_dssp EEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESE-EECTT---
T ss_pred CeEECCCCEEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEecc-EeCCC---
Confidence 466777777755666789999999999 778866666555 899999998875 55655
Q ss_pred chhhhhhhhcCCCcceEeCCCcEeee-eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 365 TDAEVASLLAEGRVPVGIGENTKIKE-CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~i~~~~~i~~-~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
|.||++|.|.+ +.++.+.+||+++.++... ++||++++||+|++|
T Consensus 406 ---------------~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~-----v~Ig~~a~i~agsvv 451 (451)
T 1yp2_A 406 ---------------ARIGDNVKIINKDNVQEAARETDGYFIKSGI-----VTVIKDALIPSGIII 451 (451)
T ss_dssp ---------------CEECTTCEECCSSCCSCEEEGGGTEEEETTE-----EEECTTCEECTTCBC
T ss_pred ---------------cEECCCCEEeCCcccccCceeCCCEEEcCCE-----EEECCCcEECCCccC
Confidence 89999999874 4555555677777776422 677888888777653
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.7e-08 Score=87.97 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=28.2
Q ss_pred eeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEEc
Q 013483 389 KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVIT 437 (442)
Q Consensus 389 ~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v~ 437 (442)
++++||++|.||.++++.. ..+||+++.||++++| |.++++++
T Consensus 117 g~v~Igd~v~IG~~a~I~~------gv~IG~~~~IgagsvV~~dv~~~~~~~ 162 (219)
T 4e8l_A 117 GDIEIGNDVWIGRDVTIMP------GVKIGDGAIIAAEAVVTKNVAPYSIVG 162 (219)
T ss_dssp CCEEECSSCEECTTCEECT------TCEECTTCEECTTCEECSCBCTTEEEE
T ss_pred CCcEECCCeEECCCCEEcC------CCEECCCCEECCCCEEcccCCCCeEEE
Confidence 4577777777777777753 4567777777777666 55555543
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.56 E-value=7.3e-08 Score=86.62 Aligned_cols=90 Identities=9% Similarity=0.061 Sum_probs=57.4
Q ss_pred eeeEEcCCcEECCCCEEeceE---EECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccC---
Q 013483 336 EHSVVGIRSRINANVHLKDTM---MLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANS--- 408 (442)
Q Consensus 336 ~~~~ig~~~~i~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~--- 408 (442)
+++++++++.||+++.|.+.. .++++ . ..+++.+.+. ++.||++|.|+++|++...
T Consensus 17 ~~vv~~~~v~IG~~t~I~~~~~~~~~~~~---------------~--~~i~~~~~i~~~v~IG~~~~I~~~v~i~~~~~~ 79 (212)
T 3eev_A 17 DQQVTNPNIIVGKHSYYSGYYHGHSFDDC---------------V--RYLHPERDDVDKLVIGSFCSIGSGAVFMMAGNQ 79 (212)
T ss_dssp GGTCCCTTEEECSSCEECCGGGCSCGGGG---------------E--ETCCSSCSSSCCEEECSSCEECTTCEEECSTTT
T ss_pred hheeeCCCeEECCCeEEccccCccccccc---------------e--eEECCCccccCCcEECCCCEECCCCEEEeCCCC
Confidence 467888899999999987411 11111 0 2344444443 5666666666666655211
Q ss_pred --------------------------CCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 409 --------------------------EGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 409 --------------------------~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
..+...++||+++|||.+++| ||++++||+||+|
T Consensus 80 ~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV 144 (212)
T 3eev_A 80 GHRSDWISTFPFFYQDNDNFADARDGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVV 144 (212)
T ss_dssp TCCTTSSCCSCGGGSCCGGGTTCCCCCCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred cccccceeeccceeecccccccccCCcccCCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence 113345688888888888887 8888888888864
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.55 E-value=9.2e-08 Score=85.98 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=27.0
Q ss_pred eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEEc
Q 013483 390 ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVIT 437 (442)
Q Consensus 390 ~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v~ 437 (442)
+++||++|.||.+++|.. .++||+++.||+|++| |+++++++
T Consensus 111 ~v~IG~~v~IG~~a~I~~------gv~IG~~~iIgagsvV~~dVp~~~vv~ 155 (212)
T 3eev_A 111 DTIIGHDVWIGTEAMIMP------GVKIGHGAIIASRSVVTKDVAPYEVVG 155 (212)
T ss_dssp CEEECSSCEECTTCEECT------TCEECTTCEECTTCEECSCBCTTEEEE
T ss_pred CeEECCCCEECCCCEEcC------CCEECCCCEECCCCEEccccCCCcEEE
Confidence 566666666666666653 4566777777777666 55555554
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-07 Score=83.79 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=18.2
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCCCc
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGI 411 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~ 411 (442)
+.||++|.|+ +|.|.++++||++++++....+
T Consensus 119 v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV 151 (219)
T 4e8l_A 119 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVV 151 (219)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred cEECCCeEECCCCEEcCCCEECCCCEECCCCEE
Confidence 5666666665 5555555555555555544433
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=5.4e-08 Score=87.08 Aligned_cols=42 Identities=24% Similarity=0.380 Sum_probs=27.4
Q ss_pred eeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 389 KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 389 ~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
++++||++|.||.++++.. ..+||+++.||+|++| |.+++++
T Consensus 112 ~~v~Ig~~v~IG~~a~I~~------gv~Ig~~~~Igags~V~~~v~~~~i~ 156 (209)
T 1mr7_A 112 GDTIIGNDVWIGKDVVIMP------GVKIGDGAIVAANSVVVKDIAPYMLA 156 (209)
T ss_dssp CCEEECSSCEECTTCEECT------TCEECTTCEECTTCEECSCBCTTEEE
T ss_pred CCcEECCCCEEcCCCEEcC------CCEECCCCEEcCCCEEcCCCCCCeEE
Confidence 3577777777777777754 4567777777777666 5555444
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.48 E-value=6.7e-06 Score=81.37 Aligned_cols=351 Identities=10% Similarity=0.066 Sum_probs=181.2
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceee-cCccceehhhhhhhhhc----CC-cEEEEEeccCh-hhHHHHHHhhccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPI-GGAYRLIDVPMSNCINS----GI-NKVYILTQYNS-ASLNRHLARAYNY 79 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi-~g~~pli~~~l~~l~~~----gi-~~i~iv~~~~~-~~i~~~~~~~~~~ 79 (442)
+++.+|+||||.||||+ ...||.++|+ .++ ++++..++++... +. -..+|.+.... +...+++++.-.|
T Consensus 75 ~kvavvlLaGGlGTRLG---~~~pKg~~~v~sgk-sflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~~F 150 (484)
T 3gue_A 75 RQAVVLKLNGGLGTGMG---LNGPKSLLQVKNGQ-TFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPTL 150 (484)
T ss_dssp TTEEEEEEECCCCGGGT---CSSCGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCHHH
T ss_pred hhcEEEEEcCCcccccC---CCCCceeeecCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCccc
Confidence 47899999999999997 7889999999 556 9999999887763 33 36677777554 5777777653222
Q ss_pred CC---Ccc-cCCceEEEeccccc------CCcCCCccccChHHHHHHhh--hhhcCCCCCccCeEEEEcCCeeeecCHHH
Q 013483 80 GS---GVT-FGDGCVEVLAATQT------PGEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMD 147 (442)
Q Consensus 80 ~~---~~~-~~~~~v~i~~~~~~------~~~~~~~~~~G~~~al~~~~--~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ 147 (442)
+- ... |....+..+..+.. ....-...|.|.++...... ..++++...+.+++.+.+.|.+...--..
T Consensus 151 gl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~ 230 (484)
T 3gue_A 151 YEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVR 230 (484)
T ss_dssp HTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHH
T ss_pred CCCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHH
Confidence 21 111 11111211111100 00011122456655443322 23333322345799999999955533346
Q ss_pred HHHHHHHcCCcEEEEEeecCCCcCCcccEEEEc---------CCCceEEEEeCCCccccccccccccccccccccccccc
Q 013483 148 FVQNHRQSGADITISCLPMDDSRASDFGLMKIN---------NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP 218 (442)
Q Consensus 148 ~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d---------~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (442)
++..+..+++++.+-+.+...++ ..-|.++.. .+|+. .+.|...-+....... .... ..
T Consensus 231 ~lG~~~~~~~d~~~kvv~Kt~~d-ekgG~l~~~~~~~~~~~~~dG~~-~vvEyseip~e~~~~f---------~~~~-g~ 298 (484)
T 3gue_A 231 LLDYMHEKQLGFLMEVCRRTESD-KKGGHLAYKDVIDETTGQTRRRF-VLRESAQCPKEDEDSF---------QNIA-KH 298 (484)
T ss_dssp HHHHHHHTTCSEEEEEEECCTTC-CSSEEEEEEC--------CCCEE-EEEEGGGSCGGGHHHH---------TCTT-TS
T ss_pred HHHHHHhcCCCEEEEEEECCCCC-CceeEEEEEccccccccCCCCCE-EEEEeccCCHHHHhhh---------cCCC-Cc
Confidence 78888888999998887765432 334544432 24543 3444333222100000 0000 11
Q ss_pred ceeeeeEEEEeHHHHHHHHhhhC--CCCc-----------------cc-ccchhhhccc-ccceEEEEec-ceeeecCCh
Q 013483 219 YIASMGVYLFKKEILLNLLRWRF--PTAN-----------------DF-GSEIIPASAN-EQFLKAYLFN-DYWEDIGTI 276 (442)
Q Consensus 219 ~l~~~Giy~~~~~~l~~~l~~~~--~~~~-----------------~~-~~~~l~~~i~-~~~i~~~~~~-g~~~di~t~ 276 (442)
.+.+++-..+.-..+.++++... .... -+ .+.++-+++. -.+..++.++ ..|.-+.+.
T Consensus 299 ~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~~~~~~ieV~R~rF~PvKn~ 378 (484)
T 3gue_A 299 CFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLFDRSEAVVVPRERFAPVKTC 378 (484)
T ss_dssp CEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTSSSEEEEECCGGGCCCCSSH
T ss_pred eEeEeeeEEEEHHHHHHHHHhccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhCCccEEEEEChhhccccccc
Confidence 23478888888888877776531 0000 00 0112222221 0234444433 567788899
Q ss_pred HHHHHHhhhhhcCCCCcccc-CCCC-cccccCccCCCceecCCcee--eeEEcCCC--EEeceEEeeeEEcCCcEECCCC
Q 013483 277 RSFFEANLALTAHPPMFSFY-DATK-PIYTSRRNLPPSKIDDSKIV--DSIISHGS--FITSSFIEHSVVGIRSRINANV 350 (442)
Q Consensus 277 ~~~~~an~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~i~--~~~i~~~~--~i~~~~i~~~~ig~~~~i~~~~ 350 (442)
.|++-+..++........+. .+.. ...+.+..++.. ...|. ...+..+. .++ ..+-+|-.++..|.++
T Consensus 379 sdLl~~~Sdly~l~~~~~l~~~~~~~~~~P~v~L~~~~---~~~v~~f~~rf~~giPsl~~---~~~L~V~Gdv~fg~~v 452 (484)
T 3gue_A 379 SDLLALRSDAYQVTEDQRLVLCEERNGKPPAIDLDGEH---YKMIDGFEKLVKGGVPSLRQ---CTSLTVRGLVEFGADV 452 (484)
T ss_dssp HHHHHHHSTTEEECTTSCEEECGGGTTCCCEEEECTTT---SSSHHHHHHHHTTCCCBCTT---EEEEEEESSEEECTTC
T ss_pred hHHHHHhhhceeccCCceEEeccccCCCCCeEEECchh---cCcHHHHHHhcCCCCCChhh---CCEEEEecceEECCCc
Confidence 99888877665433221111 1100 001111121110 01111 11122211 111 1244666688888888
Q ss_pred EEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEe
Q 013483 351 HLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECII 393 (442)
Q Consensus 351 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i 393 (442)
++...+++.+. ++ .+..|-++++++|.+|
T Consensus 453 ~l~G~v~i~~~-------------~g-~~~~ip~g~~l~~~~~ 481 (484)
T 3gue_A 453 SVRGNVVIKNL-------------KE-EPLIIGSGRVLDNEVV 481 (484)
T ss_dssp EEEEEEEEEEC-------------SS-SCEEECTTCEEESCEE
T ss_pred EEEEEEEEEcC-------------CC-CeeecCCCCEecceec
Confidence 88888877542 11 2378888888887665
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=5.3e-07 Score=80.59 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=20.9
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCCCcc
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQ 412 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~ 412 (442)
+.||++|.|+ +|.|.++++||++++++....+.
T Consensus 114 v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~ 147 (209)
T 1mr7_A 114 TIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVV 147 (209)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred cEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEc
Confidence 6677777776 56666666666666666544443
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=6.2e-07 Score=80.23 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=46.2
Q ss_pred eeeEEcCCcEECCCCEEeceEEECC--ccccchh-hhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCc
Q 013483 336 EHSVVGIRSRINANVHLKDTMMLGA--DFYETDA-EVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGI 411 (442)
Q Consensus 336 ~~~~ig~~~~i~~~~~i~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~ 411 (442)
..++||++|.|+++++|.. .|+ +....-+ ......++....+.+++++.+. .++||++|.||.++++..
T Consensus 55 ~~i~IG~~~~Ig~~v~i~~---~g~~~h~~~~~s~~p~~~~~~~~~~~~i~~~~~~~~~v~IG~~v~IG~~a~I~~---- 127 (212)
T 1xat_A 55 DKLVIGSFCSIGSGAAFIM---AGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMP---- 127 (212)
T ss_dssp CCEEECSSCEECTTCEEEC---STTTTCCTTSSCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECT----
T ss_pred cCEEEcCCCEECCCCEEEe---CCCCccccccccccceeeecccccccccccCceecCCeEECCCCEECCCCEEeC----
Confidence 4678888888888888621 011 1000000 0000000000002334455453 467777777777777753
Q ss_pred ccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 412 QEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 412 ~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
.++||+++.||+|++| |.+++++
T Consensus 128 --gv~Ig~~~~IgagsvV~~~vp~~~~~ 153 (212)
T 1xat_A 128 --GVRVGHGAIIGSRALVTGDVEPYAIV 153 (212)
T ss_dssp --TCEECTTCEECTTCEECSCBCTTEEE
T ss_pred --CCEECCCCEECCCCEEcccCCCCcEE
Confidence 4566667777777666 5555544
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.8e-06 Score=75.10 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=12.4
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEc
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIA 406 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~ 406 (442)
|.||.+|.|. ++.||++|.||+++++.
T Consensus 117 v~IG~~a~I~~gv~Ig~~~~IgagsvV~ 144 (212)
T 1xat_A 117 VWIGTEAMFMPGVRVGHGAIIGSRALVT 144 (212)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CEECCCCEEeCCCEECCCCEECCCCEEc
Confidence 4444444443 34444444444444443
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00057 Score=69.49 Aligned_cols=224 Identities=16% Similarity=0.146 Sum_probs=121.8
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeec---Cccceehhhhhhhhh-cCC-cEEEEEeccC-hhhHHHHHHhhccCC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCIN-SGI-NKVYILTQYN-SASLNRHLARAYNYG 80 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~---g~~pli~~~l~~l~~-~gi-~~i~iv~~~~-~~~i~~~~~~~~~~~ 80 (442)
.++.+|+||||.||||+ ...||.++|+. ++ +++++.++++.+ .|. -..+|.+... ++...+++++ |.+.
T Consensus 113 ~kvavvllaGGlGTRLG---~~~pK~~lpv~~~s~k-s~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~-fgl~ 187 (630)
T 3ogz_A 113 CKTVFVLVAGGLGERLG---YSSIKVSLPVETATNT-TYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRE-LQLE 187 (630)
T ss_dssp GGEEEEEECCCEEGGGT---EEEEGGGSBSCTTTCC-BHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHH-TTCC
T ss_pred hhceEEEecCCcccccC---CCCCcccceecCCCCC-cHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHH-hCCC
Confidence 47889999999999998 78999999997 78 999999999886 343 3667777654 4578888876 4222
Q ss_pred CC-cc-cCCceEEEeccccc-----CCcCCCccccChHHHHHHhhh--------------------hhcCCCCCccCeEE
Q 013483 81 SG-VT-FGDGCVEVLAATQT-----PGEAGKRWFQGTADAVRQFHW--------------------LFEDPRNKVIEDVL 133 (442)
Q Consensus 81 ~~-~~-~~~~~v~i~~~~~~-----~~~~~~~~~~G~~~al~~~~~--------------------~l~~~~~~~~~~~l 133 (442)
.. .. |....+..+..... ....-...|.|.++....... .++++...+.+++.
T Consensus 188 ~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~ 267 (630)
T 3ogz_A 188 VPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIV 267 (630)
T ss_dssp CTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEE
T ss_pred cccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEE
Confidence 11 11 11111211110000 000111234566554433221 23332223457899
Q ss_pred EEcCCeee-ecCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEE--cCCCce-E-EEEeCCCccccccccccc-ccc
Q 013483 134 ILSGDHLY-RMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI--NNEGRV-L-SFSEKPKGKDLKAMAVDT-TVL 207 (442)
Q Consensus 134 v~~gD~i~-~~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~--d~~~~v-~-~i~ek~~~~~~~~~~~~~-~~~ 207 (442)
+.+.|.+. ...--.++..+..+++++.+-+.+... ...-|.+.. ..+|+. . .+.|...-+..-+...+. .-.
T Consensus 268 v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p--~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~~~~g~~ 345 (630)
T 3ogz_A 268 FIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVP--KEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNKDGGDE 345 (630)
T ss_dssp EECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCCS--SCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC-------
T ss_pred EEccCCccccccCHHHhHHHHhcCCCEEEEEEECCC--CcceeeEEEEecCCCceeeeeEEEeccCCHhHhhccCCCccc
Confidence 99999943 333335677788889998887776432 345566554 245655 2 345533322110000000 000
Q ss_pred cccccccccccceeeeeEEEEeHHHHHHHHhh
Q 013483 208 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (442)
Q Consensus 208 ~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~ 239 (442)
..+ ....+....++..+.|+-+.+.+.+..
T Consensus 346 ~~~--~~~~~~f~GNtNnl~~~L~a~~~~l~~ 375 (630)
T 3ogz_A 346 VSD--PTGFSPFPGSVNTLVFKLSSYVDRLRE 375 (630)
T ss_dssp -------CCCSSCEEEEEEEEEHHHHHHHHHH
T ss_pred ccc--ccccccccccceeeeEEHHHHHHHHHh
Confidence 000 000122334888999998755455543
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0017 Score=57.78 Aligned_cols=105 Identities=21% Similarity=0.205 Sum_probs=69.1
Q ss_pred cceEEEEEe--CCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEE-EEEeccChhhHHHHHHhhccCCCCc
Q 013483 7 RTVAAVILG--GGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKV-YILTQYNSASLNRHLARAYNYGSGV 83 (442)
Q Consensus 7 ~~~~aVILA--aG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i-~iv~~~~~~~i~~~~~~~~~~~~~~ 83 (442)
+.|.+||++ +..-|||.| ...+......++ ||++|+++.+..++++.+ ++++++... . .+
T Consensus 2 ~~~~~vip~k~g~~KtRL~~---~l~~~~~~~l~~-~ll~~vl~~l~~~~~~~v~vvv~~~~~~--~-----~~------ 64 (211)
T 2i5e_A 2 NAMRAVIPYKKAGAKSRLSP---VLSLQEREEFVE-LMLNQVISSLKGAGIEQVDILSPSVYGL--E-----EM------ 64 (211)
T ss_dssp CCCEEEEECCCTTTTGGGTT---TSCHHHHHHHHH-HHHHHHHHHHHHTTCSEEEEEESSCTTC--S-----SC------
T ss_pred CceEEEEEeCCCCCccccCc---cCCHHHHHHHHH-HHHHHHHHHHHHcCCceEEEEEcCcHHH--H-----hh------
Confidence 458899999 667777752 112222225568 999999999999999998 888865421 1 01
Q ss_pred ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHH
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQ 150 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~ 150 (442)
++ +.++... .|.+.+++.+...+. +.++++.||+ ++..+ +.++++
T Consensus 65 -~~---~~~v~~~-----------~gl~~sl~~a~~~~~-------~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 65 -TE---ARVLLDE-----------KDLNEALNRYLKEAE-------EPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp -CS---SEEEECC-----------SCHHHHHHHHHHHCC-------SCEEEECSCCTTCCHHHHHHHTT
T ss_pred -cC---CEEEECC-----------CCHHHHHHHHHHhcC-------CCEEEEcCCcCCCCHHHHHHHHc
Confidence 11 2232211 278999998876662 6899999999 44443 556554
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=87.84 E-value=3.5 Score=36.07 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=61.5
Q ss_pred eeecCccceehhhhhhhhhcCC--cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccChH
Q 013483 34 VPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (442)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~ 111 (442)
+|.-|....|..+|+.+.+... -+|+||-+...+.-.+.+.+...-.+ .+.++.. +. .|.+
T Consensus 11 Ip~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~-------~i~~i~~-~n---------~G~~ 73 (240)
T 3bcv_A 11 VPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYP-------NIKVIHK-KN---------AGLG 73 (240)
T ss_dssp EEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCS-------SEEEEEC-CC---------CCHH
T ss_pred EecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCC-------CEEEEEC-CC---------CChH
Confidence 3444443566667777765433 26766655444332233322110001 1444431 11 5888
Q ss_pred HHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEE
Q 013483 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADIT 160 (442)
Q Consensus 112 ~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~t 160 (442)
.+...+.+... .+.++++.+|.++..+ +..+++...+.+.++.
T Consensus 74 ~a~N~g~~~a~------g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v 117 (240)
T 3bcv_A 74 MACNSGLDVAT------GEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAV 117 (240)
T ss_dssp HHHHHHHHHCC------SSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHcC------CCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEE
Confidence 89988887776 4899999999988777 6788887776566654
|
| >1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* | Back alignment and structure |
|---|
Probab=86.11 E-value=10 Score=33.40 Aligned_cols=108 Identities=11% Similarity=0.090 Sum_probs=64.1
Q ss_pred ceeecCccceehhhhhhhhhcCC--cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccCh
Q 013483 33 AVPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~ 110 (442)
.+|.-|+...|..+|+.+.+... -+|+||-+...+.-.+.+.+... . ..+.++........ ......|.
T Consensus 6 iIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~---~-----~~i~~i~~~~~~~~-~~~~n~G~ 76 (255)
T 1qg8_A 6 IMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN---D-----NRVRFYQSDISGVK-ERTEKTRY 76 (255)
T ss_dssp EEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGG---S-----TTEEEEECCCCSHH-HHHSSCHH
T ss_pred EEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhh---c-----CCEEEEeccccccc-ccccccCH
Confidence 35555654677788888876543 36777766555555555543211 1 11444433300000 00001478
Q ss_pred HHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHc
Q 013483 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (442)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~ 155 (442)
+.+...+..... .+.++++.+|.++..+ +..+++.+.+.
T Consensus 77 ~~a~N~gi~~a~------g~~i~~lD~Dd~~~~~~l~~~~~~~~~~ 116 (255)
T 1qg8_A 77 AALINQAIEMAE------GEYITYATDDNIYMPDRLLKMVRELDTH 116 (255)
T ss_dssp HHHHHHHHHHCC------CSEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcC------CCEEEEeCCCCccChHHHHHHHHHHHhC
Confidence 888888887765 4899999999988777 67777777665
|
| >3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=80.85 E-value=3.7 Score=36.76 Aligned_cols=88 Identities=6% Similarity=-0.035 Sum_probs=55.5
Q ss_pred ceehhhhhhhhhcCCcEEEEEeccChhhHH--HHHHhhccCCCCcccCCceEEEecccccCCcCCCccccChHHHHHHhh
Q 013483 41 RLIDVPMSNCINSGINKVYILTQYNSASLN--RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFH 118 (442)
Q Consensus 41 pli~~~l~~l~~~gi~~i~iv~~~~~~~i~--~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~ 118 (442)
+|+.++++.+.+.+...++++++.....+. .... +.+ +.+. .|.. .|.+.++..+.
T Consensus 38 ~ll~~tl~~~~~~~~~~vvvvt~~~~~~~~~~~~~~-----~~~-------~~~~--~q~~--------~gLg~rl~~a~ 95 (242)
T 3cgx_A 38 HFVQDMLQGLARLHADLHICYVPGDADLPEKFKAWL-----GPQ-------HMFA--AQQG--------LDLGERMKHAM 95 (242)
T ss_dssp HHHHHHHHHHTTSSSEEEEEECCCCTTHHHHHHHHH-----CTT-------SEEE--ECCS--------SSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCchhhhhhhhhhc-----cCC-------cEEe--cCCC--------CCHHHHHHHHH
Confidence 899999999999988777777765544432 2111 111 1111 1221 47899999888
Q ss_pred hhhcCCCCCccCeEEEEcCCe--eeecCHHHHHHHHH
Q 013483 119 WLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHR 153 (442)
Q Consensus 119 ~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~~~ 153 (442)
..+-. ...+.++++.+|+ +....+.++++.+.
T Consensus 96 ~~~~~---~~~~~vliigaD~P~L~~~~l~~a~~~l~ 129 (242)
T 3cgx_A 96 QKAFD---DGYDRVVLMGSDIPDYPCELVQKALNDLQ 129 (242)
T ss_dssp HHHHH---TTCSEEEEECSSCTTCCHHHHHHHHHHTT
T ss_pred HHHHh---CCCCeEEEEcCCCCCCCHHHHHHHHHHhc
Confidence 76611 0136899999999 44455777776544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 442 | ||||
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 3e-75 | |
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 7e-33 | |
| d1yp2a1 | 135 | b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt | 3e-32 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 1e-29 | |
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 3e-29 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 6e-23 | |
| d2icya2 | 378 | c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 | 1e-21 | |
| d1jyka_ | 229 | c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer | 3e-12 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 4e-09 | |
| d2cu2a2 | 268 | c.68.1.20 (A:1-268) Putative mannose-1-phosphate g | 3e-06 | |
| d2oi6a2 | 248 | c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate | 4e-05 | |
| d2dpwa1 | 231 | c.68.1.19 (A:1-231) Uncharacterized protein TTHA01 | 0.004 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 236 bits (601), Expect = 3e-75
Identities = 183/304 (60%), Positives = 237/304 (77%), Gaps = 7/304 (2%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
+R+V +ILGGGAGTRLYPLTK+RAKPAVP+G YRLID+P+SNC+NS I+K+Y+LTQ+N
Sbjct: 9 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 68
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
SASLNRHL+RAY G +G VEVLAA Q+P WFQGTADAVRQ+ WLFE+
Sbjct: 69 SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPD--WFQGTADAVRQYLWLFEEHT 126
Query: 126 NKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 185
+ LIL+GDHLYRMDY F+Q HR++ ADIT++ LPMD+ RA+ FGLMKI+ EGR+
Sbjct: 127 V---LEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRI 183
Query: 186 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245
+ F+EKP+G+ L+AM VDTT+LGL + A+E P+IASMG+Y+ K+++LNLLR +FP AN
Sbjct: 184 IEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGAN 243
Query: 246 DFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIY 303
DFGSE+IP + + ++AYL++ YWEDIGTI +F+ ANL +T P P FSFYD + PIY
Sbjct: 244 DFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIY 303
Query: 304 TSRR 307
T R
Sbjct: 304 TQPR 307
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 123 bits (311), Expect = 7e-33
Identities = 54/278 (19%), Positives = 102/278 (36%), Gaps = 51/278 (18%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASL- 69
+IL GG+GTRL+P T +K +P+ +I P+S + +GI ++ I++
Sbjct: 4 GIILAGGSGTRLHPATLAISKQLLPVYD-KPMIYYPLSTLMLAGIREILIISTPQDTPRF 62
Query: 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVI 129
+ L N+G +++ A Q G A A
Sbjct: 63 QQLLGDGSNWG---------LDLQYAVQP-------SPDGLAQAFLIGE-----SFIGND 101
Query: 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 189
L+L + Y D+ + + + Q ++ + D +G+++ + G+ +S
Sbjct: 102 LSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--PERYGVVEFDQGGKAISLE 159
Query: 190 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA--NDF 247
EKP E K A G+Y + +++ +++ R P+
Sbjct: 160 EKPL---------------------EPKSNYAVTGLYFYDQQV-VDIARDLKPSPRGELE 197
Query: 248 GSEIIPASANEQFLKAYLFND--YWEDIGTIRSFFEAN 283
+++ A L + W D GT S EA
Sbjct: 198 ITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAG 235
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 117 bits (293), Expect = 3e-32
Identities = 65/134 (48%), Positives = 96/134 (71%)
Query: 309 LPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE 368
LPPSK+ D+ + DS+I G I + I HSVVG+RS I+ ++D++++GAD+YETDA+
Sbjct: 2 LPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDAD 61
Query: 369 VASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT 428
L A+G VP+GIG+N IK IIDKNARIG NV I N + +QEA R +G++I+SG+
Sbjct: 62 RKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIV 121
Query: 429 VILKNSVITDGFVI 442
++K+++I G +I
Sbjct: 122 TVIKDALIPSGIII 135
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 114 bits (287), Expect = 1e-29
Identities = 63/279 (22%), Positives = 100/279 (35%), Gaps = 53/279 (18%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
++L GG+GTRLYP+T+ +K +PI +I P+S + +GI + I++ L
Sbjct: 6 GIVLAGGSGTRLYPITRAVSKQLLPIYD-KPMIYYPLSVLMLAGIRDILIISTPRDLPLY 64
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
R L G G FG V Q +G ADA D +
Sbjct: 65 RDL-----LGDGSQFG---VRFSYRVQE-------EPRGIADAFIVGKDFIGDS-----K 104
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
L+L + Y + + ++ I + D FG+++ ++EGRV+S E
Sbjct: 105 VALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRD--PRPFGVVEFDSEGRVISIEE 162
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
KP K G+Y + +++ R +D G
Sbjct: 163 KPS---------------------RPKSNYVVPGLYFYDNQVVEIARRIE---PSDRGEL 198
Query: 251 IIPASANEQFLKAYL------FNDYWEDIGTIRSFFEAN 283
I + E L W D GT EA+
Sbjct: 199 EITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEAS 237
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 113 bits (285), Expect = 3e-29
Identities = 59/280 (21%), Positives = 106/280 (37%), Gaps = 55/280 (19%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
+IL GG+GTRL+P+T+ +K +PI +I P+S + +GI ++ I+T
Sbjct: 4 GIILAGGSGTRLHPITRGVSKQLLPIYD-KPMIYYPLSVLMLAGIREILIITTPEDKGYF 62
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ L G G FG +++ A Q + G A A
Sbjct: 63 QRL-----LGDGSEFG---IQLEYAEQPSPD-------GLAQAFIIGETFLNGE-----P 102
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
L+L + + + +++ T+ + D FG+++ ++ R +S E
Sbjct: 103 SCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD--PERFGVVEFDDNFRAISLEE 160
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
KPK + K A G+Y + ++ + + P+ E
Sbjct: 161 KPK---------------------QPKSNWAVTGLYFYDSKV-VEYAKQVKPSER---GE 195
Query: 251 IIPASANEQFLKAYLFN-------DYWEDIGTIRSFFEAN 283
+ S N+ +L+A W D GT S EA+
Sbjct: 196 LEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAS 235
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 95.1 bits (235), Expect = 6e-23
Identities = 42/273 (15%), Positives = 82/273 (30%), Gaps = 32/273 (11%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG GTRL T + KP V IGG ++ M GI I Y +
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIGG-KPILWHIMKMYSVHGIKDFIICCGYKGYVIK 63
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ A + + S VTF R +
Sbjct: 64 EYFANYFLHMSDVTFHMAE---------------------------NRMEVHHKRVEPWN 96
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
L+ +GD + V + + + + G+ + +
Sbjct: 97 VTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTA 156
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
A+ + + +++ + + + G ++ ++ + + E
Sbjct: 157 TFPPGRFGALDIQAGQVRSFQEKPKGDGAMINGGFFVLNPSVIDLIDNDAT----TWEQE 212
Query: 251 IIPASANEQFLKAYLFNDYWEDIGTIRSFFEAN 283
+ A + L A+ +W+ + T+R
Sbjct: 213 PLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLE 245
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 93.8 bits (233), Expect = 1e-21
Identities = 33/264 (12%), Positives = 83/264 (31%), Gaps = 41/264 (15%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCI------NSGINKVYILT 62
+ + L GG GT + K + + +D+ + + V + +
Sbjct: 75 LVVLKLNGGLGTT---MGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNS 131
Query: 63 QYNSASLNRHLARAYNYGSGVTF----------GDGCVEVLAATQTPGEAGKRWFQGTAD 112
++ + + N + D V + +T E + G D
Sbjct: 132 FNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEG--WYPPGHGD 189
Query: 113 AVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170
+ ++ E V + + D+L + + +++ Q+ + + P +
Sbjct: 190 VFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTLAD 249
Query: 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKK 230
L+ + ++L ++ P +++ ++ EK I +
Sbjct: 250 VKGGTLISYEGKVQLLEIAQVPDEH-------------VNEFKSIEKFKIFNTNNLWVNL 296
Query: 231 EILLNLLRWRFPTANDFGSEIIPA 254
+ + L+ A+ EIIP
Sbjct: 297 KAIKKLVE-----ADALKMEIIPN 315
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Score = 63.9 bits (154), Expect = 3e-12
Identities = 29/280 (10%), Positives = 74/280 (26%), Gaps = 67/280 (23%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G GTRL PLT+ K V + LI+ + GIN + I+ Y +
Sbjct: 6 AIILAAGLGTRLRPLTENTPKALVQVNQ-KPLIEYQIEFLKEKGINDIIIIVGYLKEQFD 64
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ A + + ++
Sbjct: 65 YLKEKYGVR--------------------------LVFNDKYADYNNFYSLYLVKEELAN 98
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
+I + ++L++ + + + + ++ + ++ +V
Sbjct: 99 SYVIDADNYLFKNMFRNDLTRST---------YFSVYREDCTNEWFLVYGDDYKVQDIIV 149
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEI------LLNLLRWRFPTA 244
K GV + ++
Sbjct: 150 DSKAGR------------------------ILSGVSFWDAPTAEKIVSFIDKAYVSGEFV 185
Query: 245 NDFGSEIIPASANEQFLKAYLF-NDYWEDIGTIRSFFEAN 283
+ + ++ + E + + +I +++ + +
Sbjct: 186 DLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE 225
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 55.1 bits (131), Expect = 4e-09
Identities = 37/265 (13%), Positives = 72/265 (27%), Gaps = 45/265 (16%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G GTR+ K + G +++ + K + + + +
Sbjct: 4 AIILAAGKGTRMKSDL---PKVLHKVAGIS-MLEHVFRSVGAIQPEKTVTVVGHKAELVE 59
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
LA + + + GT AV + E
Sbjct: 60 EVLAGQTEFVT----------------------QSEQLGTGHAVMMTEPILEGLSG--HT 95
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
V+ + + + H TI D+ +G + N+ VL E
Sbjct: 96 LVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNP--FGYGRIVRNDNAEVLRIVE 153
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
+ D + G + E L + + ++
Sbjct: 154 QKDATD-FEKQIKEINTGTYVFDNERLFEA-------------LKNINTNNAQGEYYITD 199
Query: 251 IIP-ASANEQFLKAYLFNDYWEDIG 274
+I + + AY D+ E +G
Sbjct: 200 VIGIFRETGEKVGAYTLKDFDESLG 224
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Score = 46.2 bits (108), Expect = 3e-06
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 9 VAAVILGGGAGTRLYPL-TKQRAKPAVPIGGAYRLID 44
A+++ GG G RL+PL + R KP +P+ L++
Sbjct: 3 TYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLE 39
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 42.4 bits (98), Expect = 4e-05
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
Query: 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA 67
++ VIL G GTR+Y K + G ++ + G V+++ +
Sbjct: 2 AMSVVILAAGKGTRMYS---DLPKVLHTLAGKA-MVQHVIDAANELGAAHVHLVYGHGGD 57
Query: 68 SLNRHLARAYNYGSGVTFGDGCVEVLAATQ 97
L + L G +
Sbjct: 58 LLKQALKDDNLNWVLQAEQLGTGHAMQQAA 87
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Score = 36.4 bits (83), Expect = 0.004
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
+A++L GG +K VP G +++ + +G++ VY+
Sbjct: 2 RPSAIVLAGGKEAWAERFG-VGSKALVPYRG-RPMVEWVLEALYAAGLSPVYVGENPG 57
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 442 | |||
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 100.0 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 100.0 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 99.97 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.96 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.96 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.93 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.9 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.85 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.72 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.66 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.65 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.63 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.6 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.58 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 99.43 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.38 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.38 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.38 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.36 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.36 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.35 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.33 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 99.25 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.25 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.23 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 99.21 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 99.2 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.19 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 99.18 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 99.18 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.16 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.15 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 99.13 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.08 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 99.08 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 99.08 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 99.06 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 99.03 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 99.03 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 99.01 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.98 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.97 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.96 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 98.91 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.88 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.87 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.69 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.61 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.59 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.51 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.47 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.4 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.37 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.35 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 98.1 | |
| d1omza_ | 265 | Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga | 82.08 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=2e-40 Score=316.98 Aligned_cols=295 Identities=61% Similarity=1.078 Sum_probs=230.5
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
.++.|||||||+||||+|||.++||+||||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.........
T Consensus 10 ~~~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~~ 89 (307)
T d1yp2a2 10 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 89 (307)
T ss_dssp HHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------
T ss_pred CceEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhcccccccccccc
Confidence 56999999999999999999999999999988559999999999999999999999999999999998765221110011
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
.....++...+. ..+..++.|++++++.+...+.+. ..++|++++||+++..++..+++.|+.+++.+++.+...
T Consensus 90 ~~~~~~~~~~~~--~~~~~~~~g~~~ai~~~~~~i~~~---~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 164 (307)
T d1yp2a2 90 EGFVEVLAAQQS--PENPDWFQGTADAVRQYLWLFEEH---TVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPM 164 (307)
T ss_dssp CCEEEEEESCSS--TTSCCCCCSHHHHHHHTHHHHTTS---CCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEE
T ss_pred cccceeeceeee--ccccccccchhHHHHHhHHhhhcc---ccceEEEecCcceeccchhhhhhhhhhccccceEEEEec
Confidence 112233333332 223344689999999999988752 247899999999999999999999999999999888877
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCcc
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~ 246 (442)
+......||++.+|++++|..|.|||.......+..+...+..........+.+.++|+|+|++++|..+++...+...+
T Consensus 165 ~~~~~~~~gvv~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~ 244 (307)
T d1yp2a2 165 DEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGAND 244 (307)
T ss_dssp CHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCC
T ss_pred ccccccccceEEECCCCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccccc
Confidence 76667889999999999999999999877655555555555444444444567889999999999998888876666667
Q ss_pred cccchhhhcccc-cceEEEEecceeeecCChHHHHHHhhhhhcCCC-CccccCCCCcccccC
Q 013483 247 FGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPP-MFSFYDATKPIYTSR 306 (442)
Q Consensus 247 ~~~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~~-~~~~~~~~~~~~~~~ 306 (442)
+..++++.++++ .++.+++++|+|.|+|||++|.+||+.+++... ...+++++++|++.+
T Consensus 245 ~~~d~i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~~~~~~~~~~~~~~i~~~~ 306 (307)
T d1yp2a2 245 FGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQP 306 (307)
T ss_dssp TTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCC
T ss_pred hHHHHHHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcCCCchhhccCCCCCccCCC
Confidence 778899888874 689999999999999999999999999988764 346778888888765
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=7.1e-39 Score=300.46 Aligned_cols=234 Identities=22% Similarity=0.360 Sum_probs=194.4
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccCh-hhHHHHHHhhccCCCCcccC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~ 86 (442)
|++|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+|+++|+|++++.. +.+.+++.. +.+++
T Consensus 1 k~KavILAgG~GtRl~plT~~~pKpllpi~gk-PiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~~~------~~~~g 73 (292)
T d1fxoa_ 1 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGD------GSNWG 73 (292)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT------SGGGT
T ss_pred CcEEEEECCCCCCcCChhhcCCCcccCEECCE-ehHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHhcc------ccccC
Confidence 57999999999999999999999999999999 99999999999999999988887554 566666543 33344
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
+++.+..|. +++||++|+..+.+++.+ ++.|+++++|++++.++.+++++|.++++.+|+++.++
T Consensus 74 ---~~I~y~~q~-------~~~Gta~ai~~a~~~i~~-----~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V 138 (292)
T d1fxoa_ 74 ---LDLQYAVQP-------SPDGLAQAFLIGESFIGN-----DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV 138 (292)
T ss_dssp ---CEEEEEECS-------SCCCGGGHHHHTHHHHTT-----SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEEC
T ss_pred ---eEEEEccCC-------CCCcHHHHHHhhhhhcCC-----CceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEEC
Confidence 334433444 257999999999999985 34567788888999999999999999999999999988
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-C-
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A- 244 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~- 244 (442)
++ +++||++..|++++++.+.|||..+. |+++.+|+|+|+++++. .+++..+. +
T Consensus 139 ~~--p~~yGV~~~d~~~ki~~~~EKP~~p~---------------------Snla~~G~Y~f~~~~~~-~~~~l~~s~rg 194 (292)
T d1fxoa_ 139 LD--PERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVD-IARDLKPSPRG 194 (292)
T ss_dssp SC--GGGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHH-HHHHCCCCTTS
T ss_pred CC--HHHCeEEEEcCCCCEeEEEECCCCCC---------------------CCcEEEEEEEEChHHHH-HHHhCCCCCCC
Confidence 76 67999999999999999999998663 58999999999999984 66666554 2
Q ss_pred cccccchhhhcccccceEEEEec--ceeeecCChHHHHHHhhhhh
Q 013483 245 NDFGSEIIPASANEQFLKAYLFN--DYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 245 ~~~~~~~l~~~i~~~~i~~~~~~--g~~~di~t~~~~~~an~~~l 287 (442)
.....|+++.++++..+.++.+. .+|+|+||+++|++|+..+.
T Consensus 195 E~eitD~~~~~l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~ 239 (292)
T d1fxoa_ 195 ELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 239 (292)
T ss_dssp SCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 33447899999988887777664 36999999999999998764
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-38 Score=295.99 Aligned_cols=231 Identities=25% Similarity=0.396 Sum_probs=189.7
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhh-HHHHHHhhccCCCCcccCC
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS-LNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~-i~~~~~~~~~~~~~~~~~~ 87 (442)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+|+++|+|+++++... +++++ +++.+|+
T Consensus 2 MkaiIlagG~GtRl~p~t~~~pK~llpi~~k-p~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~~------~~g~~~g- 73 (291)
T d1mc3a_ 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLL------GDGSEFG- 73 (291)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHH------TTSGGGT-
T ss_pred ccEEEECCcCccccchhhcCCCccccEECCE-ehHHHHHHHHHHcCCCEEEEEeCcccHHHHHHHh------CchHhhC-
Confidence 8999999999999999999999999999999 9999999999999999999999988764 44444 3444554
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCe-EEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIED-VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~-~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
+.+.+..|.. ++||++|+..+.+++.+ ++ ++++++|++++.++.+++++|.+...++|+++.++
T Consensus 74 --i~I~y~~Q~~-------plGta~Ai~~a~~fi~~------~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V 138 (291)
T d1mc3a_ 74 --IQLEYAEQPS-------PDGLAQAFIIGETFLNG------EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQV 138 (291)
T ss_dssp --CEEEEEECSS-------CCCSTHHHHHTHHHHTT------SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEEC
T ss_pred --cEEEEEECCC-------CCchHHHHHHHHHHhCC------CCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEEC
Confidence 3344445543 58999999999999974 55 55556666888999999999999888999999998
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-Cc
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-AN 245 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~~ 245 (442)
++ +++||++..|++++|.++.|||..+. ++++.+|+|+|+++++. .+++..+. +.
T Consensus 139 ~d--P~~yGVve~d~~g~i~~i~EKP~~p~---------------------Sn~a~~GiY~f~~~v~~-~~~~lk~s~rg 194 (291)
T d1mc3a_ 139 MD--PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVE-YAKQVKPSERG 194 (291)
T ss_dssp SC--CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHH-HHHSCCCCSSS
T ss_pred CC--cccCCCceeccCcceeEEEECCCCCC---------------------CCeEEEEEEEeChHHHH-HHhcCCCCCCC
Confidence 76 78999999999999999999998654 58999999999999995 55665554 22
Q ss_pred cc-ccchhhhcccccceEEEEec--ceeeecCChHHHHHHhhhh
Q 013483 246 DF-GSEIIPASANEQFLKAYLFN--DYWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 246 ~~-~~~~l~~~i~~~~i~~~~~~--g~~~di~t~~~~~~an~~~ 286 (442)
.+ ..|+++.++++..+..+.+. .+|+|+||+++|++|+..+
T Consensus 195 E~EItdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v 238 (291)
T d1mc3a_ 195 ELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFV 238 (291)
T ss_dssp SCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 22 25788888887776665553 4699999999999999865
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=1.1e-32 Score=261.06 Aligned_cols=235 Identities=23% Similarity=0.354 Sum_probs=184.8
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHH-HHHHhhccCCCCccc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN-RHLARAYNYGSGVTF 85 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~-~~~~~~~~~~~~~~~ 85 (442)
..|+|||||||.||||+|+|...||||+||+|+ |||+|++++|..+|+++++|+++++...+. +++.. ...+
T Consensus 2 ~~MkavIlagG~GtRl~p~t~~~PK~ll~i~~k-pii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~~~------~~~~ 74 (295)
T d1lvwa_ 2 AHMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGD------GSQF 74 (295)
T ss_dssp CSCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT------SGGG
T ss_pred CCcEEEEECCCCcccCCcccCCCCcccCeECCE-EHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHhcc------chhc
Confidence 368999999999999999999999999999999 999999999999999999999998875444 44432 1223
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEee
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
+.. +.++ .|+. +.||++||+.+..++.+ ++.++++++|+++..++..++..|...+..+|+++.+
T Consensus 75 ~~~-i~~v--~e~~-------~~gta~Al~~a~~~l~~-----~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~ 139 (295)
T d1lvwa_ 75 GVR-FSYR--VQEE-------PRGIADAFIVGKDFIGD-----SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYY 139 (295)
T ss_dssp TSE-EEEE--ECSS-------CCCGGGHHHHTHHHHTT-----SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEE
T ss_pred CCE-EEEE--ECCC-------CCCHHHHHHHHHHHcCC-----CCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEE
Confidence 221 3333 2322 47999999999999974 3457778888899999999999999999999999988
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-C
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A 244 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~ 244 (442)
.++ +.+||++..+++++|.+|.|||..+. ++++++|+|+|++.+|. +++..... .
T Consensus 140 ~~~--~~~yG~i~~~~~~~v~~~~EKp~~~~---------------------s~~~~~Giy~~n~~if~-~~~~~~~~~~ 195 (295)
T d1lvwa_ 140 VRD--PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVE-IARRIEPSDR 195 (295)
T ss_dssp CSC--CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHH-HHHHCCCCTT
T ss_pred cCC--CccccEEEECCCCcEEEEeecccCcc---------------------cceeecceEEECHHHHH-HHHhcCCCcC
Confidence 765 67899999988999999999998653 36889999999999885 44543332 1
Q ss_pred -cccccchhhhccccc--ceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 245 -NDFGSEIIPASANEQ--FLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 245 -~~~~~~~l~~~i~~~--~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
.....++++.++... .++.+....+|.|+|++++|.+|+..+.
T Consensus 196 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i~ 241 (295)
T d1lvwa_ 196 GELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp SCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred CCeeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHHHH
Confidence 122245666666654 4555566689999999999999988763
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=1.1e-29 Score=235.16 Aligned_cols=238 Identities=25% Similarity=0.327 Sum_probs=175.8
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
|..+|||||||+||||+|+|.++||||+||+|+ |||+|+|+.|.++|+++|+|+++|..+.+.+++.+.+.+.....+.
T Consensus 1 ~~~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gk-plI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~ 79 (259)
T d1tzfa_ 1 MASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFH 79 (259)
T ss_dssp CCCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred CCceEEEECCCccccCChhhCCCCccceEECCE-EHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccch
Confidence 357899999999999999999999999999999 9999999999999999999999999999999987543211111000
Q ss_pred --------------CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHH
Q 013483 87 --------------DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNH 152 (442)
Q Consensus 87 --------------~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~ 152 (442)
...+.++. +. .+.++.+++..+...+.. +++|+++++|.+++.++.+.++.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~ 145 (259)
T d1tzfa_ 80 MAENRMEVHHKRVEPWNVTLVD--TG-------DSSMTGGRLKRVAEYVKD-----DEAFLFTYGDGVADLDIKATIDFH 145 (259)
T ss_dssp GGGTEEEETTCCCCCCEEEEEE--CC-------SSCCHHHHHHHTGGGTTT-----SSCEEEEETTEEECCCHHHHHHHH
T ss_pred hccccchhhhccccccceeEEe--cc-------ccccccchhhhhhhhccC-----CCceEEeccccccccchhhhhhhh
Confidence 01122221 11 146899999998887764 478999999999999999999999
Q ss_pred HHcCCcEEEEEeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHH
Q 013483 153 RQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEI 232 (442)
Q Consensus 153 ~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~ 232 (442)
.......+...... ...++.+... ..++..+.+.+... +.+.++|+|++++++
T Consensus 146 ~~~~~~~~~~~~~~----~~~~~~~~~~-~~~i~~~~~~~~~~----------------------~~~~~~G~y~~~~~~ 198 (259)
T d1tzfa_ 146 KAHGKKATLTATFP----PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSV 198 (259)
T ss_dssp HHHCCSEEEEEECC----CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGG
T ss_pred cccccceeeccccc----cccCCceecc-cceEEeeeeccccc----------------------eeeecceeccccchh
Confidence 88888777666533 3456655543 45666665544332 357789999999987
Q ss_pred HHHHHhhhCCCCcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCC
Q 013483 233 LLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (442)
Q Consensus 233 l~~~l~~~~~~~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~ 290 (442)
+. .++ ....++..++++.+++.+++++|.++|+|.|+||++||..+|+.+.+..
T Consensus 199 ~~-~i~---~~~~~~~~~~l~~l~~~~~v~~~~~~g~W~didt~~d~~~~~~~~~~~~ 252 (259)
T d1tzfa_ 199 ID-LID---NDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGK 252 (259)
T ss_dssp GG-GCC---STTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTTC
T ss_pred hh-hcc---cCcCccHHHHHHHHHhcCCeEEEEeCCEEEECCCHHHHHHHHHHHHcCC
Confidence 64 322 2234566789999999889999999999999999999999999988754
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=2.6e-30 Score=240.77 Aligned_cols=236 Identities=21% Similarity=0.329 Sum_probs=164.8
Q ss_pred cceEEEEEeCCCCCCCccc-ccCCCccceeec-Cccceehhhhhhhhh-cCCcEEEEEeccChhhHHHHHHhhccCCCCc
Q 013483 7 RTVAAVILGGGAGTRLYPL-TKQRAKPAVPIG-GAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~pl-t~~~pK~Llpi~-g~~pli~~~l~~l~~-~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~ 83 (442)
||+.|||||||.||||||| |..+||+|+||. ++ |||+|+++++.. .+++++++++++..+.+.++. ..+.
T Consensus 1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k-~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~------~~~~ 73 (268)
T d2cu2a2 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEAVARPY------ADGI 73 (268)
T ss_dssp CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGG------CSSS
T ss_pred CCceEEEecCCCcccCCCcccCCCCceeeecCCCC-CHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhh------cccc
Confidence 4677999999999999999 677899999985 57 999999999887 467889999988766554432 2222
Q ss_pred ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCH--HHHHHHH---HHcCCc
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY--MDFVQNH---RQSGAD 158 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l--~~~l~~~---~~~~~~ 158 (442)
+ ++...+ +.||+.++..+...+.. ..++.|+|++||+++..++ ...+..+ .+.+..
T Consensus 74 ~-------ii~E~~---------~~~t~~a~~~~~~~~~~---~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~ 134 (268)
T d2cu2a2 74 R-------LLLEPL---------GRDTAGAVLLGVAEALK---EGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFV 134 (268)
T ss_dssp E-------EEEESS---------CCHHHHHHHHHHHHHHH---HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCE
T ss_pred c-------eeeeee---------cCCcccchhhHHHHHhc---cCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCe
Confidence 1 221111 25898888877655432 1257899999999998774 3444432 234556
Q ss_pred EEEEEeecCCCcCCcccEEEEcCCC----ceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH
Q 013483 159 ITISCLPMDDSRASDFGLMKINNEG----RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (442)
Q Consensus 159 ~tl~~~~~~~~~~~~~g~v~~d~~~----~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~ 234 (442)
+|+.+.+... +..||++..++++ +|.+|.|||+...+.. .....+++++|+|+|++++|.
T Consensus 135 ~~~~~~~~~~--~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~~~--------------~~~~~~~~N~Giy~f~~~~l~ 198 (268)
T d2cu2a2 135 VALGLRPTRP--ETEYGYIRLGPREGAWYRGEGFVEKPSYAEALE--------------YIRKGYVWNGGVFAFAPATMA 198 (268)
T ss_dssp EEEEECCSSC--CSSSCEEEEEEEETTEEEEEEEECCCCHHHHHH--------------HHHTTCEEEEEEEEECHHHHH
T ss_pred Eeeecccccc--ccccceEEeccccccchhhheeecccchhhhhh--------------hhccCcccchhhhhcchHHHH
Confidence 6666666544 6899999886543 7999999999765421 112347899999999999887
Q ss_pred HHHhhhCCCC---------cccccchhhh---------cc-cccceEEEEecceeeecCChHHHHHHhh
Q 013483 235 NLLRWRFPTA---------NDFGSEIIPA---------SA-NEQFLKAYLFNDYWEDIGTIRSFFEANL 284 (442)
Q Consensus 235 ~~l~~~~~~~---------~~~~~~~l~~---------~i-~~~~i~~~~~~g~~~di~t~~~~~~an~ 284 (442)
+.+++..+.. ....++.++. ++ +..++.+++++++|.|+||++++.+..+
T Consensus 199 ~~~~~~~p~i~~~~~~~~~~~~~~~~f~~l~~iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~~ 267 (268)
T d2cu2a2 199 ELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVFS 267 (268)
T ss_dssp HHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHHT
T ss_pred HHHHhhhHHHHHHHHHHHhcchHHHHHhhCccccchhhhhcccCCceEEecCCCcCCCcCHHHHHHHhc
Confidence 6666544321 0111122222 12 2467999999999999999999998754
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.96 E-value=1.7e-28 Score=223.19 Aligned_cols=220 Identities=16% Similarity=0.206 Sum_probs=161.8
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
++|+|||||||.||||+|+|...||||+||+|+ |||+|+++.|.++|+++|+|++++..+.+. ++.+.+.
T Consensus 2 m~mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gk-pli~~~i~~l~~~g~~~i~iv~g~~~e~i~-~~~~~~~-------- 71 (229)
T d1jyka_ 2 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQFD-YLKEKYG-------- 71 (229)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGGT-HHHHHHC--------
T ss_pred CceeEEEECCCCcccCCccccCCCcceeEECCE-EHHHHHHHHHHHhCCcccccccccchhhhh-hhhhhcc--------
Confidence 689999999999999999999999999999999 999999999999999999999999887774 4544331
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
++++...+.. +.|++++++.+.+.++ ++|++.++|.+++..+.+.+ ....+.....
T Consensus 72 ---i~i~~~~~~~-------~~Gt~~sl~~a~~~l~-------~~~ii~~dd~~~~~~~~~~~-------~~~~~~~~~~ 127 (229)
T d1jyka_ 72 ---VRLVFNDKYA-------DYNNFYSLYLVKEELA-------NSYVIDADNYLFKNMFRNDL-------TRSTYFSVYR 127 (229)
T ss_dssp ---CEEEECTTTT-------TSCTHHHHHTTGGGCT-------TEEEEETTEEESSCCCCSCC-------CSEEEEECEE
T ss_pred ---cccccccccc-------ccccccccccchhhhc-------ccccccccccccccchhhhh-------hccccceeee
Confidence 3344333332 3699999999988875 57777776666655543221 1223333333
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHH---HhhhCCC
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNL---LRWRFPT 243 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~---l~~~~~~ 243 (442)
.+ +..++.+..++++++..+.++|.. .+..+|+|+|++.....+ ++.....
T Consensus 128 ~~--~~~~~~~~~~~~~~i~~~~~~~~~------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 181 (229)
T d1jyka_ 128 ED--CTNEWFLVYGDDYKVQDIIVDSKA------------------------GRILSGVSFWDAPTAEKIVSFIDKAYVS 181 (229)
T ss_dssp SS--CSSCCEEEECTTCBEEEEECCCSS------------------------EEBCCSEEEECHHHHHHHHHHHHHHHTT
T ss_pred ee--ccccceeEEccCCceeeEEEeccc------------------------ceEEEEEEEEcHHHHHHHHHHHHHhhcc
Confidence 32 456788888889999999887753 345789999998755433 3322111
Q ss_pred ---CcccccchhhhcccccceEEEEecc-eeeecCChHHHHHHhhhh
Q 013483 244 ---ANDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 244 ---~~~~~~~~l~~~i~~~~i~~~~~~g-~~~di~t~~~~~~an~~~ 286 (442)
...+.++++...+.+..++.+...+ .|++++|++||.+|++.+
T Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~~~~ 228 (229)
T d1jyka_ 182 GEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEIL 228 (229)
T ss_dssp TCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHhCCceEEEecCCCEEecCCHHHHHHHHHhh
Confidence 2223355677777888888888775 599999999999998765
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.93 E-value=4.3e-25 Score=202.74 Aligned_cols=232 Identities=18% Similarity=0.224 Sum_probs=173.7
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCce
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 89 (442)
.|||||||+||||+| .+||||+||+|+ |||+|+++.|.++|+++++||+++....+..+..... .
T Consensus 3 ~AIIlAaG~GtRl~~---~~PK~L~~i~Gk-pli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~~~~------~----- 67 (250)
T d1g97a2 3 FAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQT------E----- 67 (250)
T ss_dssp EEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTTTTS------E-----
T ss_pred EEEEECCCCCCCCCC---CCCceeeEECCe-eHHHHHHHHHHHcCCCeEEEecccccchhhhhccccc------c-----
Confidence 699999999999997 579999999999 9999999999999999999999998776665542211 1
Q ss_pred EEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeee-cCHHHHHHHHHHcCCcEEEEEeecCC
Q 013483 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR-MDYMDFVQNHRQSGADITISCLPMDD 168 (442)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~-~~l~~~l~~~~~~~~~~tl~~~~~~~ 168 (442)
. ... .. +.|+.+++..+...+... ..+.+++..+|.++. ..+.++++.|.......++...+...
T Consensus 68 ~-~~~-~~---------~~g~~~~~~~a~~~l~~~---~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 133 (250)
T d1g97a2 68 F-VTQ-SE---------QLGTGHAVMMTEPILEGL---SGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN 133 (250)
T ss_dssp E-EEC-SS---------CCCHHHHHHTTHHHHTTC---CSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSC
T ss_pred c-ccc-cc---------ccccchHHHHHHHhhhcc---cCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceecc
Confidence 1 111 11 258999999998888642 123444445554444 55899999999999998888877665
Q ss_pred CcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---Cc
Q 013483 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---AN 245 (442)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~---~~ 245 (442)
+..++.+..++++.+..+.++++..... ..+++..+|+|+|+...+...++..... ..
T Consensus 134 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~ 194 (250)
T d1g97a2 134 --PFGYGRIVRNDNAEVLRIVEQKDATDFE-----------------KQIKEINTGTYVFDNERLFEALKNINTNNAQGE 194 (250)
T ss_dssp --CTTSCEEEECTTCCEEEEECGGGCCHHH-----------------HTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCS
T ss_pred --cCCCceEEEeeceEEEEeeccccccccc-----------------cccceeeeeeeecchHHHHHHHHHhccCcchhh
Confidence 5678888888888999998877654321 1246789999999998887776653322 23
Q ss_pred ccccchhhhcccc-cceEEEEecceeee--cCChHHHHHHhhhhhcC
Q 013483 246 DFGSEIIPASANE-QFLKAYLFNDYWED--IGTIRSFFEANLALTAH 289 (442)
Q Consensus 246 ~~~~~~l~~~i~~-~~i~~~~~~g~~~d--i~t~~~~~~an~~~l~~ 289 (442)
.+..++++.+++. .++.++..+++|.+ |+|++||..|++.+..+
T Consensus 195 ~~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~~ 241 (250)
T d1g97a2 195 YYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRR 241 (250)
T ss_dssp CCGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHHH
Confidence 3446677777764 68999999999966 78999999998877543
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=4.9e-23 Score=188.84 Aligned_cols=231 Identities=19% Similarity=0.230 Sum_probs=158.2
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
+.|++||||||.||||+| .+||||+||+|+ |||+|+|+.|..+|+++|+|++++..+.+.++.....
T Consensus 1 ~~MkvIILAAG~GtRm~~---~~PKpli~i~gk-piie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~~~~--------- 67 (248)
T d2oi6a2 1 NAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-AMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDDN--------- 67 (248)
T ss_dssp CCEEEEEECCSCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCCCTT---------
T ss_pred CCceEEEECCCCCCCCCC---CCCeeeEEECCh-hHHHHHHHHHHHcCCcEEEeccCcccceeeeeccccc---------
Confidence 369999999999999997 589999999999 9999999999999999999999998877665542211
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEEEEEee
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~tl~~~~ 165 (442)
...+. +. .+.|+++++.++...+.. ..++++..+|..+... ..+.+. +........++..+
T Consensus 68 --~~~~~---~~-------~~~g~~~~~~~~~~~i~~-----~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 129 (248)
T d2oi6a2 68 --LNWVL---QA-------EQLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISVETLQRLR-DAKPQGGIGLLTVK 129 (248)
T ss_dssp --EEEEE---CS-------SCCCHHHHHHHHGGGSCT-----TSEEEEEETTCTTCCHHHHHHHH-HHCCTTSEEEEEEE
T ss_pred --ccccc---cc-------cCcccHHHHHhhhhhhcc-----ccceeeecCccccccchhHHHHH-HHhhccccceeEEE
Confidence 01122 11 136999999999988865 4788888888865433 222221 22233444555555
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC--
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-- 243 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-- 243 (442)
..+ +..++.+..+ ++....+.+++...... ....+..++.|.|+.+.|.+.++.....
T Consensus 130 ~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 189 (248)
T d2oi6a2 130 LDD--PTGYGRITRE-NGKVTGIVEHKDATDEQ-----------------RQIQEINTGILIANGADMKRWLAKLTNNNA 189 (248)
T ss_dssp CSC--CTTSCEEEEE-TTEEEEEECGGGCCTTG-----------------GGCCEEEEEEEEEEHHHHHHHHTTCCCCST
T ss_pred ecC--Cccccccccc-cCccceeeeccCCChhh-----------------hhhhhhhhhhhccchHHHHHHHHHhhcccc
Confidence 444 5667776664 45555554433322110 1235678899999998887776654332
Q ss_pred -Ccccccchhhhcccc-cceEEEEecceee--ecCChHHHHHHhhhhhc
Q 013483 244 -ANDFGSEIIPASANE-QFLKAYLFNDYWE--DIGTIRSFFEANLALTA 288 (442)
Q Consensus 244 -~~~~~~~~l~~~i~~-~~i~~~~~~g~~~--di~t~~~~~~an~~~l~ 288 (442)
...+..++++.+++. .++.++...++|. .|+||+||..|.+.+.+
T Consensus 190 ~~e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~ 238 (248)
T d2oi6a2 190 QGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQS 238 (248)
T ss_dssp TCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHH
Confidence 122335777777764 6888888887774 48899999999887643
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.85 E-value=9.2e-21 Score=157.05 Aligned_cols=134 Identities=49% Similarity=0.866 Sum_probs=120.7
Q ss_pred CCCceecCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEe
Q 013483 309 LPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKI 388 (442)
Q Consensus 309 ~~~~~i~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i 388 (442)
.||+.+.++.+.+++|+++|.|+.+.+.+|+||++|.|++++.|++++++++..++...............+.||++|+|
T Consensus 2 lPp~~i~~~~i~~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I 81 (135)
T d1yp2a1 2 LPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHI 81 (135)
T ss_dssp CCCEEEEEEEEEEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEE
T ss_pred CCCcccCCCEEEeCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEe
Confidence 57888888889999999999999878899999999999999999999999998777776555544443334899999999
Q ss_pred eeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCccC
Q 013483 389 KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 442 (442)
Q Consensus 389 ~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~i 442 (442)
++|+|++||+||++|++.+...+.+..+++++++|+.|.++||++++|++|++|
T Consensus 82 ~~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~vI 135 (135)
T d1yp2a1 82 KRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 135 (135)
T ss_dssp ESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred ccceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcCC
Confidence 999999999999999999999999999999999999999999999999999987
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=6.1e-17 Score=145.75 Aligned_cols=218 Identities=14% Similarity=0.104 Sum_probs=132.6
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|++.|||||||.||||. .++||+|+|++|+ |||+|+|+.+.++ ++++|+||++++...+.+......
T Consensus 2 M~i~AIILAaG~gtRm~---~~~pK~L~~i~gk-plI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~~~-------- 69 (225)
T d1i52a_ 2 LDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANH-------- 69 (225)
T ss_dssp CCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGGGC--------
T ss_pred CCEEEEEeCCCcceeCC---CCCCcceeEECCE-EHHHHHHHHHHhCccccccccccchhhhhhhhhhhccc--------
Confidence 57899999999999998 6789999999999 9999999999887 589999999876654433332211
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~ 163 (442)
..+.+.. +. .+..++++.+...+.+ .+.+++..+|. ++... +.+++........ ..+..
T Consensus 70 --~~v~~~~--~~---------~~~~~sv~~~~~~~~~-----~~~vl~~~~~~p~i~~~~~~~~~~~~~~~~~-~~v~~ 130 (225)
T d1i52a_ 70 --PQITVVD--GG---------DERADSVLAGLKAAGD-----AQWVLVHDAARPCLHQDDLARLLALSETSRT-GGILA 130 (225)
T ss_dssp --TTEEEEE--CC---------SSHHHHHHHHHHTSTT-----CSEEEECCTTCTTCCHHHHHHHHGGGGTCSS-CEEEE
T ss_pred --ccccccc--CC---------cchhHHHHhhhcccCc-----cceeeeeccCCCCCCHHHHHHHHhhhhhccc-ccccc
Confidence 0132222 11 2567888888888864 46788888997 44444 5566555544433 34444
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+..+. .......++......++.. .....+.+.|..+.+...+++....
T Consensus 131 ~~~~d~-----~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~f~~~~l~~~~~~~~~~ 180 (225)
T d1i52a_ 131 APVRDT-----MKRAEPGKNAIAHTVDRNG-------------------------LWHALTPQFFPRELLHDCLTRALNE 180 (225)
T ss_dssp EECCSC-----EEEECTTSSSEEEEECCTT-------------------------CEEEEEEEEEEHHHHHHHHHHHHHT
T ss_pred cceeec-----cchhcccccccccccchHH-------------------------HHHHhhhhhhhhHHHHHHHHHHHhc
Confidence 443331 1111122233333222111 1223467788888776666654322
Q ss_pred Ccccccchhhhccc-ccceEEEEecceeeecCChHHHHHHhhhh
Q 013483 244 ANDFGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 244 ~~~~~~~~l~~~i~-~~~i~~~~~~g~~~di~t~~~~~~an~~~ 286 (442)
...+ .|....+.. +.++..+..+-.-..|+||+||..|+..+
T Consensus 181 ~~~~-tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~l 223 (225)
T d1i52a_ 181 GATI-TDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYL 223 (225)
T ss_dssp TCCC-CSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred CCCC-CcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHHh
Confidence 2222 343333332 45666555332225689999999997654
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.66 E-value=9.1e-16 Score=138.16 Aligned_cols=218 Identities=11% Similarity=0.082 Sum_probs=122.2
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
+.+.+||||||.||||. ...||+|++|+|+ |||+|+++.+.+++ +++|+|++++...++.+.+... +
T Consensus 3 k~i~~IIlAaG~GtRm~---~~~pK~l~~l~Gk-pli~~~l~~~~~~~~~~~Iivv~~~~~~~~~~~~~~~--------~ 70 (226)
T d1w77a1 3 KSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEES--------I 70 (226)
T ss_dssp TCEEEEEECCC----------CCCTTTSEETTE-EHHHHHHHHHHTCTTEEEEEEECCGGGTHHHHTTTTS--------C
T ss_pred CceEEEEeCCccCccCc---CCCCceeeEECCe-eHHHHHHHHHHhhccccceeeccchhhhhhhhccccc--------c
Confidence 35789999999999998 6789999999999 99999999999875 6888888865443333332211 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~ 163 (442)
.. .+.+.. .. ....++++.++..+.. ..+.+++..||. ++..+ +.++++.+...+..++ .
T Consensus 71 ~~-~~~~~~--gg---------~~r~~sv~~~l~~~~~----~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~i~--~ 132 (226)
T d1w77a1 71 DV-DLRFAI--PG---------KERQDSVYSGLQEIDV----NSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVL--G 132 (226)
T ss_dssp SS-EEEEEC--CC---------SSHHHHHHHHHHTSCT----TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEEEE--E
T ss_pred cc-cccccc--cc---------chhhhhhhhhHhhhcc----ccccceecccccccccHHHhhhhhhhhhccCceee--c
Confidence 11 133221 11 1256788888777653 247788889999 54444 6788877766654332 2
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+..+. ..+ .. .++......++. ..+...+.+.|+.+.|...++.....
T Consensus 133 ~~~~d~--~~~---~~-~~~~~~~~~~r~-------------------------~~~~~~~p~~f~~~~l~~~~~~~~~~ 181 (226)
T d1w77a1 133 VPAKAT--IKE---VN-SDSLVVKTLDRK-------------------------TLWEMQTPQVIKPELLKKGFELVKSE 181 (226)
T ss_dssp EECCSC--CCC---BC-TTSCBC-------------------------------CCEEEEEEEEECHHHHHHHHHHHHHS
T ss_pred cccccc--eEE---Ec-cCCceeecccch-------------------------hhhHHHHHHhHhhHHHHHHHHHHHhc
Confidence 222221 000 11 222222111111 12334577899988877666543222
Q ss_pred Ccccccchhhhcc-cccceEEEEecceeeecCChHHHHHHhhhh
Q 013483 244 ANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 244 ~~~~~~~~l~~~i-~~~~i~~~~~~g~~~di~t~~~~~~an~~~ 286 (442)
...+ .|....+. .+.++..+..+..-+.|++|+|+..|...+
T Consensus 182 ~~~~-TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL 224 (226)
T d1w77a1 182 GLEV-TDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL 224 (226)
T ss_dssp CCCC-CC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred CCCc-CcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHh
Confidence 2222 22222222 256666654433334689999999997765
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.65 E-value=4.6e-16 Score=142.89 Aligned_cols=147 Identities=12% Similarity=0.094 Sum_probs=101.5
Q ss_pred cCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec------------eEEEC
Q 013483 296 YDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD------------TMMLG 359 (442)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~------------~~~~~ 359 (442)
++|++.+.+++.|+..+.| +++.|. ++.||++|+|+ ++.| .++++|.++.+.+++.++. .+.+|
T Consensus 8 I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~v~IG 87 (262)
T d2jf2a1 8 VHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIG 87 (262)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCCEEEEC
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCceEEEC
Confidence 4444444445555555544 344443 46666666666 4455 4566666666665555422 35566
Q ss_pred CccccchhhhhhhhcCC-CcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcC
Q 013483 360 ADFYETDAEVASLLAEG-RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILK 432 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~ 432 (442)
++..+++.......+-. ...+.||++|.|. +++|+++|.||+++++.+...+.++++||++++||.++.+ ||+
T Consensus 88 ~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~v~IG~ 167 (262)
T d2jf2a1 88 DRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGA 167 (262)
T ss_dssp SSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred CeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceeccccEeeh
Confidence 65555544444333321 1226899999997 6999999999999999999999999999999999999998 999
Q ss_pred CcEEcCCccC
Q 013483 433 NSVITDGFVI 442 (442)
Q Consensus 433 ~~~v~~~~~i 442 (442)
+++|+++|+|
T Consensus 168 ~a~igagS~V 177 (262)
T d2jf2a1 168 HVMVGGCSGV 177 (262)
T ss_dssp TCEECSSCEE
T ss_pred hceeeccceE
Confidence 9999999975
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.63 E-value=1.2e-15 Score=140.00 Aligned_cols=146 Identities=17% Similarity=0.159 Sum_probs=108.1
Q ss_pred CCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec------------eEEECC
Q 013483 297 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD------------TMMLGA 360 (442)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~------------~~~~~~ 360 (442)
+|++.+.+++.|+.++.| +++.|. ++.|+++|+|+ ++.| .++.||++|.|.++++|+. .+.+|+
T Consensus 4 h~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig~ 83 (259)
T d1j2za_ 4 AKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGE 83 (259)
T ss_dssp CTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECS
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEecc
Confidence 445555555555555555 344442 56777777777 5666 5788888888888888743 456666
Q ss_pred ccccchhhhhhhhcCCC-cceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCC
Q 013483 361 DFYETDAEVASLLAEGR-VPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKN 433 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~ 433 (442)
+..+++....+..+.+. ..+.||+++.|. +++++++|.||.++.+.+...+..+++||+++|||.+++| ||++
T Consensus 84 ~~~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~IG~~ 163 (259)
T d1j2za_ 84 DNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKG 163 (259)
T ss_dssp SCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTT
T ss_pred ccccccccccccccccccccccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeecccEeccc
Confidence 66665544444333321 127899999997 7999999999999999999999999999999999999998 9999
Q ss_pred cEEcCCccC
Q 013483 434 SVITDGFVI 442 (442)
Q Consensus 434 ~~v~~~~~i 442 (442)
|+||+||+|
T Consensus 164 a~IgagSvV 172 (259)
T d1j2za_ 164 CMIAGKSAL 172 (259)
T ss_dssp CEECTTCEE
T ss_pred eeeeeeeee
Confidence 999999975
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.60 E-value=1.7e-14 Score=129.72 Aligned_cols=219 Identities=12% Similarity=0.108 Sum_probs=117.4
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCC-cEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGI-NKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi-~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
++..|||||||.|+||. .++||+|++++|+ |||+|+++.+.+++. +.++||++. .+.+.+.+...+. ..
T Consensus 2 ~K~iAIIlAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~iivv~~~-~~~~~~~~~~~~~---~~-- 71 (226)
T d1vgwa_ 2 RKNIALIPAAGIGVRFG---ADKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSP-EDTFADKVQTAFP---QV-- 71 (226)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCT-TCSTHHHHHHHCT---TS--
T ss_pred CceEEEEeCCCCcccCC---cCCCeeeeEECCE-EHHHHHHHHHHhCCCccccceecch-hhhhhhhhccccc---ce--
Confidence 46679999999999997 6789999999999 999999999999864 666666654 3445555544331 10
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~ 163 (442)
..+...... ...+...++......... ...+.+++.+||. ++... +.++++.+.......++..
T Consensus 72 ----~~~~~g~~~-------~~~s~~~~l~~~~~~~~~---~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~~~ 137 (226)
T d1vgwa_ 72 ----RVWKNGGQT-------RAETVRNGVAKLLETGLA---AETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAV 137 (226)
T ss_dssp ----EEECCCCSS-------HHHHHHHHHHHHHHHSSS---CTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEEE
T ss_pred ----eeccccccc-------cchhhhHHHHHHHHhccc---ccccceeecccccccCcHHHHHHHHhhhcccccceeecc
Confidence 112211010 012333344333322211 2246788889998 55544 6788888877766644433
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
+..+ ..... +++.+....++.... ....-..|..+.+.+.+... .
T Consensus 138 -~~~~------~~~~~-~~~~i~~~~~r~~~~-------------------------~~~~p~~f~~~~l~~~~~~~--~ 182 (226)
T d1vgwa_ 138 -PVAD------TLKRA-ESGQISATVDRSGLW-------------------------QAQTPQLFQAGLLHRALAAE--N 182 (226)
T ss_dssp -ECCS------CEEEE-SSSBEEEEECCTTEE-------------------------EEEEEEEEEHHHHHHHHHC----
T ss_pred -cccc------cceec-cCCeEEeccchHHHH-------------------------HHHhhhcccHHHHHHHHHHh--h
Confidence 3221 22222 466776655433221 12234566777665555431 1
Q ss_pred Ccccccchhhhcc-cccceEEEEecceeeecCChHHHHHHhhh
Q 013483 244 ANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (442)
Q Consensus 244 ~~~~~~~~l~~~i-~~~~i~~~~~~g~~~di~t~~~~~~an~~ 285 (442)
...+ .|....+. .+.++..+.-+...+.|+||+||..|...
T Consensus 183 ~~~~-tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~l 224 (226)
T d1vgwa_ 183 LGGI-TDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLL 224 (226)
T ss_dssp --CC-CSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred cCCC-CcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHHH
Confidence 1112 23222222 25667666554445679999999998654
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=6.5e-14 Score=125.31 Aligned_cols=209 Identities=16% Similarity=0.192 Sum_probs=122.6
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccChhhHHHHHHhhccCCCCcccCCce
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 89 (442)
|||||||.||||+ .++||+|++++|+ |||+|+|+.+.++ ++++|+|+++.+.. +++.... ... ..
T Consensus 6 AIILAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~Iivv~~~~~~---~~~~~~~--~~~-----~~ 71 (221)
T d1vpaa_ 6 AILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWF---EVVEKRV--FHE-----KV 71 (221)
T ss_dssp EEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGH---HHHHTTC--CCT-----TE
T ss_pred EEEccCcCcccCC---CCCCcceeEECCE-EHHHHHHHHHHhccccccceEEecchhh---hHHHhhh--ccc-----cc
Confidence 8999999999997 6789999999999 9999999999987 57999998865432 2232211 111 11
Q ss_pred EEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEeecC
Q 013483 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMD 167 (442)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~~~~ 167 (442)
+.+.... .+...++..+...+.. ...+.+++++||. ++..+ +..+++.+...... +...+..
T Consensus 72 ~~~~~~~-----------~~~~~s~~~~~~~~~~---~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~~--~~~~~~~ 135 (221)
T d1vpaa_ 72 LGIVEGG-----------DTRSQSVRSALEFLEK---FSPSYVLVHDSARPFLRKKHVSEVLRRARETGAA--TLALKNS 135 (221)
T ss_dssp EEEEECC-----------SSHHHHHHHHHHHHGG---GCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEE--EEEEECC
T ss_pred ccccccc-----------ccccchHHHHHHHHHh---cCCCcEEEeccccccccHHHHHhhhhhhcccccc--ccccccc
Confidence 3332211 1344555555544432 1257899999998 44444 67778777655432 2222222
Q ss_pred CCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCccc
Q 013483 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (442)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~~ 247 (442)
+ . +... ++++...+ .+. ..+...+-+.|+.+.+....++. ..+
T Consensus 136 d-----~-~~~~-~~~~~~~~-~~~-------------------------~~~~~~~~~~~~~~~l~~~~~~~----~~~ 178 (221)
T d1vpaa_ 136 D-----A-LVRV-ENDRIEYI-PRK-------------------------GVYRILTPQAFSYEILKKAHENG----GEW 178 (221)
T ss_dssp S-----E-EEEE-ETTEEEEE-CCT-------------------------TEEEEEEEEEEEHHHHHHHHTTC----CCC
T ss_pred c-----e-eEee-cCccceec-chH-------------------------HHHHhhhhhhhhHHHHHHHHHhC----CCC
Confidence 1 1 1222 12222222 111 12345567788887776654431 122
Q ss_pred ccchhhhccc-ccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 248 GSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 248 ~~~~l~~~i~-~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
.|....+.. +.++..+..+...+.|+||+||..|...+.
T Consensus 179 -tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~llk 218 (221)
T d1vpaa_ 179 -ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAR 218 (221)
T ss_dssp -SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHH
T ss_pred -ccHHHHHHHcCCceEEEecChhhcCCCCHHHHHHHHHHHh
Confidence 233333332 456766654444457999999998876553
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=99.43 E-value=1.3e-14 Score=130.85 Aligned_cols=118 Identities=17% Similarity=0.210 Sum_probs=87.6
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
|+..|||||||+|+||++++. .||+|+|++|+ |||+|+++.+.+++++++++++++..... .
T Consensus 1 M~~~avIlA~G~~~r~~r~g~-~~K~L~~i~Gk-pli~~~~~~l~~~~~~~vvv~~~~~~~~~----------~------ 62 (231)
T d2dpwa1 1 MRPSAIVLAGGKEAWAERFGV-GSKALVPYRGR-PMVEWVLEALYAAGLSPVYVGENPGLVPA----------P------ 62 (231)
T ss_dssp CCCEEEEECCCBCSGGGTTTC-SBGGGSEETTE-ETHHHHHHHHHHTTCEEEEESCCSSCSSC----------C------
T ss_pred CCceEEEECCCCCCCCCCCCC-CCceeeEECCe-eHHHHHHHHHHhcCCCeEEeeeeccccce----------e------
Confidence 477899999999999998873 47999999999 99999999999999999988876543110 0
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~ 164 (442)
... +.. ..|..++++.+.+.+. +++++++||. +++.+ +..+++.+.+ .+..+.+.
T Consensus 63 ---~~~----~~~-------~~~~~~~v~~al~~~~-------~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~ 119 (231)
T d2dpwa1 63 ---ALT----LPD-------RGGLLENLEQALEHVE-------GRVLVATGDIPHLTEEAVRFVLDKAPE--AALVYPIV 119 (231)
T ss_dssp ---SEE----ECC-------CSSHHHHHHHHHHTCC-------SEEEEEETTCTTCCHHHHHHHHHHCCS--CSEEEEEE
T ss_pred ---eee----ccc-------chHHHHHHHHHHHhhc-------CceEEeeCCCccCCHHHHHHHHHHhhh--cCceEEEE
Confidence 000 011 2589999999988875 6899999999 55544 6777775543 34444444
Q ss_pred e
Q 013483 165 P 165 (442)
Q Consensus 165 ~ 165 (442)
+
T Consensus 120 ~ 120 (231)
T d2dpwa1 120 P 120 (231)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.38 E-value=2.3e-12 Score=113.91 Aligned_cols=114 Identities=16% Similarity=0.277 Sum_probs=78.9
Q ss_pred CcccccCccCCCceecCCceeeeEEcCCCEEe-ceEE-----eeeEEcCCcEECCCCEEece------------------
Q 013483 300 KPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI-----EHSVVGIRSRINANVHLKDT------------------ 355 (442)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i-----~~~~ig~~~~i~~~~~i~~~------------------ 355 (442)
+.+.+++.|.|.+.+.+ ++.||++|+|+ .+.| ...+||++|.|++++.|+..
T Consensus 23 p~I~~~a~I~p~A~i~g----~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~ 98 (210)
T d1qrea_ 23 PVIDPTAYIDPQASVIG----EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVD 98 (210)
T ss_dssp CEECTTCEECTTCEEEE----SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEET
T ss_pred CccCCCCEECCCCEEec----ceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCcccccc
Confidence 34555555666555522 56777777777 5555 25789999999999998542
Q ss_pred -----EEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 356 -----MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 356 -----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
+.+|++ |.||+++.|. +|.||++|.||.++++.+ .+||+++.|+.++.+
T Consensus 99 ~~~~~~~IG~~------------------v~IG~~~~i~g~~~IGd~~~IG~gs~i~~-------~~IG~~~vIg~~svv 153 (210)
T d1qrea_ 99 GKEYAVYIGNN------------------VSLAHQSQVHGPAAVGDDTFIGMQAFVFK-------SKVGNNCVLEPRSAA 153 (210)
T ss_dssp TEEESEEECTT------------------CEECTTCEEEEEEEECTTCEECTTCEEEE-------EEECTTCEECTTCEE
T ss_pred ccccceeeccc------------------cccccccccccCCcccCCcEeeCCccccc-------cccccCcEEecCcEe
Confidence 334443 6777777775 688888888888888864 367888888777665
Q ss_pred ----EcCCcEEcCCccC
Q 013483 430 ----ILKNSVITDGFVI 442 (442)
Q Consensus 430 ----i~~~~~v~~~~~i 442 (442)
|++++.|++|+++
T Consensus 154 ~g~~i~~g~~I~~g~~v 170 (210)
T d1qrea_ 154 IGVTIPDGRYIPAGMVV 170 (210)
T ss_dssp ESCEECTTBEECTTCEE
T ss_pred cCcEeCCCcEECCCcEE
Confidence 6777777777653
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.38 E-value=2.1e-11 Score=110.18 Aligned_cols=231 Identities=16% Similarity=0.226 Sum_probs=138.1
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
+|.-|||+|.|.++|+. .|+|++++|+ |||+|+++++.+. ++++|+|++. .+.+.+.... + +
T Consensus 1 ~k~i~iIpAR~~SkRl~------~Knl~~i~Gk-Pli~~~i~~a~~~~~~d~Iiv~td--~~~i~~~~~~-~--~----- 63 (245)
T d1h7ea_ 1 SKAVIVIPARYGSSRLP------GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATD--DPRVEQAVQA-F--G----- 63 (245)
T ss_dssp CCEEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEES--CHHHHHHHHH-T--T-----
T ss_pred CCEEEEEcCCCCCcCCC------CccccccCCc-cHHHHHHHHHHhCCCCCeEEEecc--cccchhhhhh-c--C-----
Confidence 36789999999999984 4999999999 9999999998886 5788888875 3344444332 1 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeee-ec-CHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RM-DYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~-~~-~l~~~l~~~~~~~~~~tl~~ 163 (442)
.++...... ..++......+...+. .+.++.+.+|..+ +. .+..+++.+...........
T Consensus 64 ----~~~~~~~~~--------~~~~~~~~~~~~~~~~------~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~ 125 (245)
T d1h7ea_ 64 ----GKAIMTRND--------HESGTDRLVEVMHKVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATL 125 (245)
T ss_dssp ----CEEEECCSC--------CSSHHHHHHHHHHHSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEE
T ss_pred ----ceEEEecCc--------cccccHHHHHHHHhcC------CCEEEEecchhhhcccccchhhhhccccccccccccc
Confidence 111111111 1245556666666665 3788889999943 43 36777777766654433222
Q ss_pred eecCC--CcC-CcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh
Q 013483 164 LPMDD--SRA-SDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (442)
Q Consensus 164 ~~~~~--~~~-~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~ 240 (442)
..... ... ...........+....+...+..... ...........|+|.|+++.|..+.. .
T Consensus 126 ~~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~g~~~~~~~~l~~~~~-~ 189 (245)
T d1h7ea_ 126 CHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPR---------------NAEKARYLKHVGIYAYRRDVLQNYSQ-L 189 (245)
T ss_dssp EEEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCT---------------TGGGCCEEEEEEEEEEEHHHHHHGGG-S
T ss_pred ccccccccccCCcceeeccchhhhhhhhhhhhhhhhh---------------cccccccceeeeeEEeeecccccccc-c
Confidence 22111 001 11222333344555555544433210 01112345678999999998865432 1
Q ss_pred CCCCccccc--chhhhcccccceEEEEecceeeecCChHHHHHHhhhhhc
Q 013483 241 FPTANDFGS--EIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 241 ~~~~~~~~~--~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~ 288 (442)
.+......+ +.+..+-.+.++.++..+..+.+|+|++||..|...+.+
T Consensus 190 ~~s~~e~~e~ie~lr~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~~ 239 (245)
T d1h7ea_ 190 PESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQ 239 (245)
T ss_dssp CCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHH
T ss_pred cCChhhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHh
Confidence 121111111 223323346789888888889999999999999877653
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.38 E-value=2.4e-11 Score=109.90 Aligned_cols=237 Identities=16% Similarity=0.178 Sum_probs=143.5
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
..|||+|.|.++|+. .|+|.+|+|+ |||+|+++.+.++++++|+|.+. .+.+.++..+. +..
T Consensus 2 ~i~iIpAR~gSkrip------~KnL~~i~Gk-pLI~~~i~~a~~s~i~~iiVsTd--~~~i~~~~~~~---g~~------ 63 (246)
T d1vh1a_ 2 FVVIIPARYASTRLP------GKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVEAA---GGE------ 63 (246)
T ss_dssp CEEEEECCCCCC--C------CTTTCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHT---TCE------
T ss_pred EEEEEecCCCCcCCC------CchhhhcCCc-cHHHHHHHHHHHcCCCcEEEEec--Cccccchhhcc---ccc------
Confidence 469999999999984 4999999999 99999999999999999999884 55666666542 211
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeee-ec-CHHHHHHHHHHcCCcEEEEEeec
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RM-DYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~-~~-~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
+.+.. +.. ..|+......+...... ..+.++.+.||..+ .. .+..+++.+.....+....+.+.
T Consensus 64 -v~~~~--~~~-------~~~~~~~~~~~~~~~~~----~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~ 129 (246)
T d1vh1a_ 64 -VCMTR--ADH-------QSGTERLAEVVEKCAFS----DDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPI 129 (246)
T ss_dssp -EEECC--------------CHHHHHHHHHHTTCC----TTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEEC
T ss_pred -ceeec--ccc-------cccchHHHHHHHhhccc----ccceeeeeccccccchhhHHHHHhhhhcccccccccccccc
Confidence 21221 111 13555554443333321 24678889999944 33 36788888888777766555544
Q ss_pred CCCc---CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 167 DDSR---ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 167 ~~~~---~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.... ......+..+.++.+..+...+........ ....+.....++...|+|+|+++.|..... ..+.
T Consensus 130 ~~~~~~~~~~~vk~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~giy~~~~~~l~~~~~-~~~s 200 (246)
T d1vh1a_ 130 HNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRF--------AEGLETVGDNFLRHLGIYGYRAGFIRRYVN-WQPS 200 (246)
T ss_dssp CCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHH--------SSCCCCCCSCCEEEEEEEEEEHHHHHHHHH-SCCC
T ss_pred cchhcccCCCcceeeecccCcccccccccchhhhhhh--------hhhhhccchhhheecceeeechhhhhhhcc-CCCC
Confidence 3311 112234556778888888765543221000 000111123456688999999998865432 2222
Q ss_pred Cccccc--chhhhcccccceEEEEecc-eeeecCChHHHHHHhhhh
Q 013483 244 ANDFGS--EIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 244 ~~~~~~--~~l~~~i~~~~i~~~~~~g-~~~di~t~~~~~~an~~~ 286 (442)
.....+ +.+..+-.+.++..+..+. ...||+|++||..|.+.|
T Consensus 201 ~~E~~e~le~lR~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k~m 246 (246)
T d1vh1a_ 201 PLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 246 (246)
T ss_dssp HHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHC
T ss_pred hHHHHHhHHHHHHHHCCCceEEEEecCCCCCCCCCHHHHHHHHhcC
Confidence 111111 2333333467888887764 468999999999997653
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.36 E-value=3.7e-11 Score=109.12 Aligned_cols=242 Identities=17% Similarity=0.204 Sum_probs=145.7
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
..+||||.|.++|+. .|.|.+|+|+ |||+|+++.+.++++++|+|++. +.++.+...+. +..
T Consensus 2 ~~~iIpAR~gSkRlp------~Knl~~i~Gk-pLI~~~i~~a~~s~i~~IiVsTd--~~~i~~~~~~~---~~~------ 63 (255)
T d1vica_ 2 FTVIIPARFASSRLP------GKPLADIKGK-PMIQHVFEKALQSGASRVIIATD--NENVADVAKSF---GAE------ 63 (255)
T ss_dssp CEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHT---TCE------
T ss_pred EEEEEecCCCCCCCC------CchhhhhCCc-CHHHHHHHHHHHCCCCeEEEEcC--Ccccchhhhhh---ccc------
Confidence 469999999999984 3999999999 99999999999999999988884 44555554431 211
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeee-ec-CHHHHHHHHHHcCCcEEEEEeec
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RM-DYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~-~~-~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
+....... ..|+..+...+...... ..+.++.+.||..+ +. .+..+++.+.......+......
T Consensus 64 -~~~~~~~~---------~~~~~~~~~~~~~~~~~----~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~ 129 (255)
T d1vica_ 64 -VCMTSVNH---------NSGTERLAEVVEKLAIP----DNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKI 129 (255)
T ss_dssp -EEECCCSS---------CCHHHHHHHHHHHTTCC----TTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred -cceeeecc---------CCcchhhHHHHHHhhcc----CCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeec
Confidence 11221111 13555555544433322 24678888999943 33 36788888888777766655543
Q ss_pred CCC---cCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 167 DDS---RASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 167 ~~~---~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
... ....+.....++++.+..+...+........ ..............+....|+|+|++..+...... .+.
T Consensus 130 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~ 204 (255)
T d1vica_ 130 HDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQF----MNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQW-APT 204 (255)
T ss_dssp CCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHH----TTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHS-CCC
T ss_pred cchhhccCccceeeeeccCCcccccccccccccchhh----hhccchhhcccccchheeeeeecccHHHHhhhhcc-CCC
Confidence 321 1123334556677888887765543221000 00000111112234566889999999988655321 111
Q ss_pred Cccccc--chhhhcccccceEEEEecc-eeeecCChHHHHHHhhhhh
Q 013483 244 ANDFGS--EIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 244 ~~~~~~--~~l~~~i~~~~i~~~~~~g-~~~di~t~~~~~~an~~~l 287 (442)
.....+ +.+..+-.+..+..+..+. .++||+|++||..|...+.
T Consensus 205 ~le~~e~le~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~ilk 251 (255)
T d1vica_ 205 QLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILA 251 (255)
T ss_dssp HHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHH
T ss_pred hhHHHHhHHHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHHH
Confidence 111111 1223333466787776654 5789999999999987765
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.36 E-value=1.6e-12 Score=113.51 Aligned_cols=63 Identities=24% Similarity=0.371 Sum_probs=45.4
Q ss_pred eEeCCCcEeeeeEeCCCcEECCCeEEccCCCc-ccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 380 VGIGENTKIKECIIDKNARIGKNVIIANSEGI-QEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 380 ~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~-~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+.+++++.+.++.++.++.++++++....... ....++|+++|||.++.+ ||++++||+||+|
T Consensus 107 ~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~I~~gv~IG~~s~IgagsvV 175 (196)
T d1g97a1 107 TKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTI 175 (196)
T ss_dssp CEEEEEEEEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCEE
T ss_pred eEecceEEecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeEEcCCcEECCCCEECCCCEE
Confidence 34455555566666667777777666554433 345689999999999887 9999999999875
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.35 E-value=1.5e-12 Score=119.12 Aligned_cols=132 Identities=14% Similarity=0.188 Sum_probs=71.8
Q ss_pred cCccCCCcee-cCCcee-eeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhh--------hhhhc
Q 013483 305 SRRNLPPSKI-DDSKIV-DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEV--------ASLLA 374 (442)
Q Consensus 305 ~~~~~~~~~i-~~~~i~-~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~ 374 (442)
++.|+|.++| +++.|. ++.|+++|+|+. ++.||++|.|++++.|++.+.+|+++.+.+... .....
T Consensus 5 ~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~----~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~ 80 (262)
T d2jf2a1 5 SAFVHPTAIVEEGASIGANAHIGPFCIVGP----HVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGE 80 (262)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTCEECT----TEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSC
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECC----CCEECCCCEEeCCEEEcCCccccccceeeeecccceeecccccccc
Confidence 4444444444 222221 455555555553 677778888888888877777776654433111 11111
Q ss_pred CCCcceEeCCCcEee-eeEeCCC-------cEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCcc
Q 013483 375 EGRVPVGIGENTKIK-ECIIDKN-------ARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFV 441 (442)
Q Consensus 375 ~~~~~~~i~~~~~i~-~~~ig~~-------~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~ 441 (442)
.+ .+.||+++.|+ +|.|..+ ++||+++.+.+...+..++.||+++++..++.+ ||++++||+++.
T Consensus 81 ~~--~v~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~ 158 (262)
T d2jf2a1 81 PT--RVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTA 158 (262)
T ss_dssp CC--EEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCE
T ss_pred Cc--eEEECCeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCce
Confidence 11 16666666664 3444322 345555555554444455555555555444433 788888888875
Q ss_pred C
Q 013483 442 I 442 (442)
Q Consensus 442 i 442 (442)
|
T Consensus 159 i 159 (262)
T d2jf2a1 159 V 159 (262)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.33 E-value=4.8e-12 Score=111.74 Aligned_cols=94 Identities=11% Similarity=0.218 Sum_probs=71.3
Q ss_pred EcCCCEEe-ceEE-eeeEEcCCcEECCCCEE----eceEEECCccccchhhhhhhhcCCCcceEeCCCcEee--------
Q 013483 324 ISHGSFIT-SSFI-EHSVVGIRSRINANVHL----KDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------- 389 (442)
Q Consensus 324 i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-------- 389 (442)
|++.|+|. .+.| .++.||++|.|+++|+| +..+.+|++ |.|+++|+|.
T Consensus 25 I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~------------------~~I~~~~~I~~~~~~~~~ 86 (210)
T d1qrea_ 25 IDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDR------------------SNVQDGVVLHALETINEE 86 (210)
T ss_dssp ECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTT------------------CEECTTCEEEECCSBCTT
T ss_pred cCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEccc------------------ceeeeeeEeccceeeccc
Confidence 44455555 3344 57899999999999999 457888876 7788888772
Q ss_pred ----------------eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE----EcCCcEEcCCcc
Q 013483 390 ----------------ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV----ILKNSVITDGFV 441 (442)
Q Consensus 390 ----------------~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v----i~~~~~v~~~~~ 441 (442)
+++||++|.||+++.+. ..++||++++||.+++| ||++++|+++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~IG~~v~IG~~~~i~------g~~~IGd~~~IG~gs~i~~~~IG~~~vIg~~sv 152 (210)
T d1qrea_ 87 GEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVH------GPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSA 152 (210)
T ss_dssp SCBCGGGCEEETTEEESEEECTTCEECTTCEEE------EEEEECTTCEECTTCEEEEEEECTTCEECTTCE
T ss_pred cccccCccccccccccceeeccccccccccccc------cCCcccCCcEeeCCccccccccccCcEEecCcE
Confidence 46677777777777664 46789999999999877 899999988775
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=6.9e-12 Score=108.67 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=74.5
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|..+.|||||||+|+||+ ..||+|++++|+ |||+|+++.+... +.+++|+++...+... .+ +
T Consensus 1 M~~i~~iILAgG~ssRmG----~~~K~ll~~~g~-~ll~~~l~~l~~~-~~~ivv~~~~~~~~~~-----~~----~--- 62 (188)
T d1e5ka_ 1 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMTQ-LSHVVVNANRHQEIYQ-----AS----G--- 62 (188)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHHH-CSCEEEECSSSHHHHH-----TT----S---
T ss_pred CCceeEEEEcCCCCcCCC----CCCcccCEECCE-ehhHHHHhhhccc-ccccccccCccHHhhh-----hc----C---
Confidence 567899999999999997 258999999999 9999999998876 5667777765432211 11 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecCH-HHHHH
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDY-MDFVQ 150 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~l-~~~l~ 150 (442)
+.+....... ..|...++..+..... .+.+++++||+ ++..++ ..+++
T Consensus 63 ----~~v~~d~~~~-------~~~~~~g~~~~~~~~~------~~~vlv~~~D~P~i~~~~i~~L~~ 112 (188)
T d1e5ka_ 63 ----LKVIEDSLAD-------YPGPLAGMLSVMQQEA------GEWFLFCPCDTPYIPPDLAARLNH 112 (188)
T ss_dssp ----CCEECCCTTC-------CCSHHHHHHHHHHHCC------SSEEEEEETTCTTCCTTHHHHHHH
T ss_pred ----CCcccccccc-------ccchhHHHHHHHHhcc------cceEEEeccCCCCCCHHHHHHHHH
Confidence 1111111111 1356667776666554 47899999999 556664 44444
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.25 E-value=2e-11 Score=111.39 Aligned_cols=12 Identities=17% Similarity=-0.219 Sum_probs=5.6
Q ss_pred EcCCcEEcCCcc
Q 013483 430 ILKNSVITDGFV 441 (442)
Q Consensus 430 i~~~~~v~~~~~ 441 (442)
||++++||.+++
T Consensus 142 Ig~~v~IG~~s~ 153 (259)
T d1j2za_ 142 IGDYVNIGGLTA 153 (259)
T ss_dssp ECSSCEECTTCE
T ss_pred ccccceecceee
Confidence 444444444443
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.23 E-value=6.2e-11 Score=101.16 Aligned_cols=111 Identities=25% Similarity=0.367 Sum_probs=74.3
Q ss_pred cccccCccCCCceecCCceeeeEEcCCCEEe-ceEE----eeeEEcCCcEECCCCEEece----EEECCccccchhhhhh
Q 013483 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI----EHSVVGIRSRINANVHLKDT----MMLGADFYETDAEVAS 371 (442)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i----~~~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~ 371 (442)
++.+++.|.+.+.+.+ ++.||++|.|+ .+.| ..+.||+++.+++++.+..+ +.+|++
T Consensus 14 ~Ig~~~~I~~~a~I~~----~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~---------- 79 (172)
T d1xhda_ 14 KIASSAFIADYVTITG----DVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDD---------- 79 (172)
T ss_dssp EECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTT----------
T ss_pred EECCCcEECCCCEEeC----CEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeee----------
Confidence 4444444444444422 56667776666 5555 23688888888888887654 556654
Q ss_pred hhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 372 LLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 372 ~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
+.+++++.+.++.|++++.||.++++.+ .++||++++||++++| .++..|++++
T Consensus 80 --------~~~~~~~~~~~~~i~~~~~ig~~~~i~~------gv~IG~~~~IgagsvV-~~~~~i~~~~ 133 (172)
T d1xhda_ 80 --------VTVGHQVILHSCHIKKDALIGMGSIILD------GAEIGEGAFIGAGSLV-SQGKKIPPNT 133 (172)
T ss_dssp --------CEECTTCEEESCEECTTCEECTTCEECT------TCEECTTCEECTTCEE-CTTCEECTTE
T ss_pred --------eeeeeeecccccccccceEEecccEeeC------CcEEcCcccccceEEE-eeCeEECCCe
Confidence 6777778888888888888888888875 5678888888888766 3444444444
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=99.21 E-value=1.7e-11 Score=106.61 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=60.3
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEEC
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIG 400 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig 400 (442)
++|+++|+|+. ++.||++|.|++++.|++.+.+|++ +.+++++.+. ++.||++|.||
T Consensus 95 ~~I~~~~~I~~----~~~Ig~~~~I~~~~~I~~~~~Ig~~------------------~~i~~~~~i~g~v~Ig~~~~IG 152 (193)
T d3bswa1 95 ILIMPYVVINA----KAKIEKGVILNTSSVIEHECVIGEF------------------SHVSVGAKCAGNVKIGKNCFLG 152 (193)
T ss_dssp CEECTTCEECT----TCEECTTCEECTTCEECTTCEECTT------------------CEECTTCEECTTCEECTTCEEC
T ss_pred ceEeeeeeecC----Cceeeeccccccccccceeeecccc------------------ccccccccccccceeeccccCC
Confidence 55666666654 6777777777777777777777765 6777777775 57777777777
Q ss_pred CCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 401 KNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
.++++.. ..+||+++.||+|++| +.+++++
T Consensus 153 ~~s~I~~------~v~Ig~~~~IgagsvV~~dv~~~~~~ 185 (193)
T d3bswa1 153 INSCVLP------NLSLADDSILGGGATLVKNQDEKGVF 185 (193)
T ss_dssp TTCEECT------TCEECTTCEECTTCEECSCBCSCCEE
T ss_pred ceeeEcC------CeEECCCCEECCCCEECcCCCCCcEE
Confidence 7777753 5667777778777776 5555544
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=99.20 E-value=1.1e-10 Score=101.43 Aligned_cols=27 Identities=11% Similarity=0.278 Sum_probs=14.0
Q ss_pred eeeCCCeEEccCcEE-----EcCCcEEcCCcc
Q 013483 415 DRSAEGFYIRSGVTV-----ILKNSVITDGFV 441 (442)
Q Consensus 415 ~~~~~~~~i~~~~~v-----i~~~~~v~~~~~ 441 (442)
++||+++|||++++| ||++++||+||+
T Consensus 143 v~Ig~~~~IG~~s~I~~~v~Ig~~~~Igagsv 174 (193)
T d3bswa1 143 VKIGKNCFLGINSCVLPNLSLADDSILGGGAT 174 (193)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred ceeeccccCCceeeEcCCeEECCCCEECCCCE
Confidence 344444555555444 556666665554
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=6e-11 Score=86.60 Aligned_cols=51 Identities=25% Similarity=0.422 Sum_probs=29.1
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEE
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVII 405 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~ 405 (442)
++.||++|.|++++.|+..+.+|++ |.||++|+|.+|.|+++|+|++++.+
T Consensus 14 ~v~IG~~~~I~~~~~i~g~~~IG~~------------------v~Ig~~~~i~~~~Ig~~~~I~~~s~i 64 (78)
T d1fxja1 14 TLTHGRDVEIDTNVIIEGNVTLGHR------------------VKIGTGCVIKNSVIGDDCEISPYTVV 64 (78)
T ss_dssp EEEECSSCEECTTEEEEEEEEECTT------------------CEECTTCEEESCEECTTCEECTTCEE
T ss_pred cEEECCCCEECCccEEeCCcEECCC------------------CEECCCeEEecCEECCCCEEcCCcEE
Confidence 4455555555555555555555554 55555555555555555555555555
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=99.18 E-value=2.5e-10 Score=101.36 Aligned_cols=217 Identities=16% Similarity=0.143 Sum_probs=130.7
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
++--|||+|.|.++|+. .|+|++++|+ |||+|+++.+.+++ +++|+|.+ ..+.+.+.+.. + +..
T Consensus 3 ~~~iaiIpar~~S~R~p------~K~l~~i~gk-pLi~~~i~~~~~s~~~~~Iiv~t--d~~~i~~i~~~-~--~~~--- 67 (225)
T d1eyra_ 3 KQNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVST--DGGLIAEEAKN-F--GVE--- 67 (225)
T ss_dssp CEEEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHHHTCCSEEEEEE--SCHHHHHHHHH-T--TCE---
T ss_pred CCEEEEEccCCCCcCCC------CccccccCCe-EHHHHHHHHHHHcCCCceEEEee--ccchhhhhhhh-h--cce---
Confidence 34568999999999984 5999999999 99999999999987 58877776 34455555443 2 111
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~ 163 (442)
+ +........ ...++...++.+...+.. ..+.+++++||. +.+.. +.++++.+...+.+..+.+
T Consensus 68 ----~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~ 133 (225)
T d1eyra_ 68 ----V-VLRPAELAS-----DTASSISGVIHALETIGS----NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSA 133 (225)
T ss_dssp ----E-EECCHHHHS-----TTCCHHHHHHHHHHHHTC----CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEE
T ss_pred ----e-eeecccccc-----ccccchhhcccccccccc----ccceEEEeeccccccccccccccceeecccccccccee
Confidence 1 111011000 013566777777766643 257899999999 44443 7888888877777655555
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+... ...+. +...+++....+........ . .+.....+..+.++|+++.+.+... ...
T Consensus 134 ~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~y~~~g~iy~~~~~~l~~~-~~~--- 192 (225)
T d1eyra_ 134 CPMEH--HPLKT-LLQINNGEYAPMRHLSDLEQ-------------P-RQQLPQAFRPNGAIYINDTASLIAN-NCF--- 192 (225)
T ss_dssp EECSS--CTTSC-EEECSSSCEEESSCGGGGTS-------------C-GGGSCCEEEEEEEEEEEEHHHHHHH-TSS---
T ss_pred ecccc--ccccc-cccccccccccccccccccc-------------c-cccCcceeeecceeEEeeHHHHHHc-CCc---
Confidence 54432 12222 33335565554432211110 0 1111123566788999999877432 111
Q ss_pred CcccccchhhhcccccceEEEEec-ceeeecCChHHHHHHhhhh
Q 013483 244 ANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 244 ~~~~~~~~l~~~i~~~~i~~~~~~-g~~~di~t~~~~~~an~~~ 286 (442)
+ ..++..+..+ -..+||+|++||..|...+
T Consensus 193 ---~----------~~~~~~~~i~~~~~~dIdt~eDl~~ae~i~ 223 (225)
T d1eyra_ 193 ---F----------IAPTKLYIMSHQDSIDIDTELDLQQAENIL 223 (225)
T ss_dssp ---C----------CSSCEEEECCTTTTCCCCSHHHHHHHHHHH
T ss_pred ---c----------CCCeEEEEcCccceECCCCHHHHHHHHHHh
Confidence 0 1223334433 2357999999999997654
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=99.18 E-value=9.4e-12 Score=109.16 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=83.7
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
++.+||||||.|+||+ .+.||+|++++|+ |||+|+++.+.+.. ++.|+|+.. ..+ ++.. +...
T Consensus 1 ~is~IILAaG~g~Rmg---~~~pK~~~~i~gk-pii~~~l~~~~~~~~~~~Ivvv~~-~~~----~~~~---~~~~---- 64 (205)
T d1w55a1 1 EMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NIT----YMKK---FTKN---- 64 (205)
T ss_dssp CEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHH----HHHT---TCSS----
T ss_pred CeEEEEeCCccCeeCC---cCCCceeEEECCE-EHHHHHHHHHHhhccccccccccc-ccc----cccc---cccc----
Confidence 3679999999999998 6789999999999 99999999998865 577766653 322 2221 1111
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~ 164 (442)
+.++. .. .....+++.++..++ .+.+++..||. +++.+ +.++++.+.+ .++.+.+.
T Consensus 65 ---~~~v~--Gg---------~~r~~Sv~~gl~~~~------~~~VlIhd~~rP~i~~~~i~~li~~~~~--~~~~i~~~ 122 (205)
T d1w55a1 65 ---YEFIE--GG---------DTRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDK--ADCITPAL 122 (205)
T ss_dssp ---SEEEE--CC---------SSHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGG--CSEEEEEE
T ss_pred ---ccccc--cc---------cchhhhhhhhhhhhh------hcceeeeccCcccCcHHHHHHHHhhhhc--cccccccc
Confidence 12221 10 135678888887775 47899999999 66655 5777776554 34455555
Q ss_pred ecC
Q 013483 165 PMD 167 (442)
Q Consensus 165 ~~~ 167 (442)
+..
T Consensus 123 ~~~ 125 (205)
T d1w55a1 123 KVA 125 (205)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=7.3e-11 Score=86.14 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=54.3
Q ss_pred eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcE
Q 013483 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 398 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ 398 (442)
++.||++|.|+ .+.+ .+++||++|+|+++|.|+++.+..+ +.|+++|+|.+|+||++|.
T Consensus 14 ~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~-------------------~~I~~~s~i~~~~Ig~~~~ 74 (78)
T d1fxja1 14 TLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDD-------------------CEISPYTVVEDANLAAACT 74 (78)
T ss_dssp EEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTT-------------------CEECTTCEEESEEECTTCE
T ss_pred cEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCC-------------------CEEcCCcEEECCEECCCCE
Confidence 56777778777 5666 4799999999999999998877555 9999999999999999999
Q ss_pred ECCC
Q 013483 399 IGKN 402 (442)
Q Consensus 399 ig~~ 402 (442)
||+.
T Consensus 75 IGPf 78 (78)
T d1fxja1 75 IGPF 78 (78)
T ss_dssp ESCC
T ss_pred ECcC
Confidence 9974
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.15 E-value=1.9e-10 Score=98.11 Aligned_cols=96 Identities=21% Similarity=0.356 Sum_probs=68.0
Q ss_pred eEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCCCcceEeCCCcEeee-----e
Q 013483 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-----C 391 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-----~ 391 (442)
..||++|+|+ .+.| .++.||++|.|++++.|+.. +.+|++ +.+++++.+.. +
T Consensus 13 ~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~------------------~~i~~~~~~~~~~~~~~ 74 (172)
T d1xhda_ 13 PKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDR------------------VNVQDQCTLHQSPQYPL 74 (172)
T ss_dssp CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECCTTCCE
T ss_pred CEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccce------------------eeeeeeceeccCCcCCe
Confidence 4566666666 5555 57999999999999999754 567776 67777777742 5
Q ss_pred EeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 392 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 392 ~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+||+++.++.++.+.+ .+++++++||.++++ ||++++||+||+|
T Consensus 75 ~ig~~~~~~~~~~~~~-------~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV 123 (172)
T d1xhda_ 75 ILEDDVTVGHQVILHS-------CHIKKDALIGMGSIILDGAEIGEGAFIGAGSLV 123 (172)
T ss_dssp EECTTCEECTTCEEES-------CEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred eeeeeeeeeeeecccc-------cccccceEEecccEeeCCcEEcCcccccceEEE
Confidence 6777777777666643 345555555555544 7999999999875
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=4.2e-11 Score=104.33 Aligned_cols=57 Identities=19% Similarity=0.103 Sum_probs=41.6
Q ss_pred cccccCccCCCceec-CCceeeeEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEeceEEECC
Q 013483 301 PIYTSRRNLPPSKID-DSKIVDSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDTMMLGA 360 (442)
Q Consensus 301 ~~~~~~~~~~~~~i~-~~~i~~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~~~~~~~ 360 (442)
.+..++.|+|++.+. +. ++.||++|+|+ .+.| ..++||++|.|++++.|.......+
T Consensus 56 ~iG~~~~I~p~~~i~~G~---nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~ 117 (200)
T d1krra_ 56 TVGENAWVEPPVYFSYGS---NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVH 117 (200)
T ss_dssp BCCSSCEECSCEEESCST---TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSS
T ss_pred cCCCCCEEcCCEEEecCC---ccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccce
Confidence 356677788888773 33 56788888887 6666 3578999999999999887666554
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=3.2e-10 Score=99.05 Aligned_cols=62 Identities=21% Similarity=0.354 Sum_probs=47.2
Q ss_pred EeCCCcEeeeeEeCCCcEECCCeEEccCCCccc-ceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 381 GIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 381 ~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.+++++.+.++.+++++.++++++..+..+... ...|++++|||.++.+ ||++|+||+||+|
T Consensus 109 ~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV 176 (201)
T d2oi6a1 109 KAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTV 176 (201)
T ss_dssp EEEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEE
T ss_pred EEceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCCcEECCCCEECCCCEE
Confidence 444444445677888888888888777654443 5689999999999876 9999999999875
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=3.5e-10 Score=98.37 Aligned_cols=38 Identities=13% Similarity=0.328 Sum_probs=19.1
Q ss_pred EcCCCEEe-ceEE---eeeEEcCCcEECCCCEEe--ceEEECCc
Q 013483 324 ISHGSFIT-SSFI---EHSVVGIRSRINANVHLK--DTMMLGAD 361 (442)
Q Consensus 324 i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~--~~~~~~~~ 361 (442)
||++|+|+ +..+ .++.||++|.|+++|+|. ..+.+|++
T Consensus 57 iG~~~~I~p~~~i~~G~nv~IG~~~~I~~~~~I~~~~~i~IG~~ 100 (200)
T d1krra_ 57 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDN 100 (200)
T ss_dssp CCSSCEECSCEEESCSTTEEECSSCEECSCEEEECSSCEEECSS
T ss_pred CCCCCEEcCCEEEecCCccEECCccEECceEEEecCCCcEeCCC
Confidence 45555555 2222 245666666666666663 33444444
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=1.4e-09 Score=96.70 Aligned_cols=218 Identities=13% Similarity=0.165 Sum_probs=126.1
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 84 (442)
++++.|||+|.|.++||. .|+|++++|+ |||+|+++++.+++ +++|+|.+. .+.+.+.... + + ..
T Consensus 1 ~~ki~aiIpaR~~S~Rlp------~K~l~~i~gk-pLi~~~i~~~~ks~~id~Iivstd--~~~i~~~~~~-~--~--~~ 66 (228)
T d1qwja_ 1 PPHLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAKQ-F--G--AQ 66 (228)
T ss_dssp CCCEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHH-T--T--CE
T ss_pred CCCEEEEeccCCCCCCCC------CcchhhhCCe-eHHHHHHHHHHhcCCcceEEEecc--hhhhhhhhhh-c--C--cc
Confidence 468999999999999994 5999999999 99999999999877 578777763 4455555543 1 1 11
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHcCCcEEEE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITIS 162 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~~~~tl~ 162 (442)
+-........ ......+.+..+...... .+.++++.+|. +.. ..+.++++.+...+.+..+.
T Consensus 67 -----~~~~~~~~~~------~~~~~~~~i~~~~~~~~~-----~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~ 130 (228)
T d1qwja_ 67 -----VHRRSSETSK------DSSTSLDAIVEFLNYHNE-----VDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFS 130 (228)
T ss_dssp -----EEECCGGGSS------TTCCHHHHHHHHHTTCTT-----CSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEE
T ss_pred -----cccccccccc------ccchhhhhhhhccccccc-----cceeeeecccccccCchhhhhhhhhhhccCcccccc
Confidence 1111111100 013466677666654443 57888889999 444 34788998888888887766
Q ss_pred EeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 013483 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (442)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~ 242 (442)
+...... .|........+........+.. ..+.+.....+..+.++|+++.+++.. ..
T Consensus 131 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--------------~~~~qd~~~~y~~ng~~~~~k~~~~~~---~~-- 188 (228)
T d1qwja_ 131 VVRRHQF---RWSEIQKGVREVTEPLNLNPAK--------------RPRRQDWDGELYENGSFYFAKRHLIEM---GY-- 188 (228)
T ss_dssp EEEECCC---EECCCCSSTTCCCCBSSSBTTB--------------CCCTTTSCCEEEEEEEEEEEEHHHHHT---TC--
T ss_pred ccccccc---cchhhhhhccccccchhhhhhh--------------ccccccccceeeeeeEEEEEeHHHHhh---CC--
Confidence 6544321 1111111001110000000000 000111112345566788888776631 10
Q ss_pred CCcccccchhhhcccccceEEEEec-ceeeecCChHHHHHHhhhhhc
Q 013483 243 TANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 243 ~~~~~~~~~l~~~i~~~~i~~~~~~-g~~~di~t~~~~~~an~~~l~ 288 (442)
+.+.+...|..+ ...+||+|++||..|.+.+..
T Consensus 189 -------------~~~~k~~~~~i~~~~~idIDt~eD~~~Ae~~l~k 222 (228)
T d1qwja_ 189 -------------LQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (228)
T ss_dssp -------------SSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred -------------cCCCCEEEEEcCccceECCCCHHHHHHHHHHHHH
Confidence 111344455544 245799999999999887753
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.06 E-value=3.5e-09 Score=100.46 Aligned_cols=264 Identities=11% Similarity=0.093 Sum_probs=151.0
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhh----cCC-cEEEEEeccCh-hhHHHHHHhhccC
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGI-NKVYILTQYNS-ASLNRHLARAYNY 79 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~----~gi-~~i~iv~~~~~-~~i~~~~~~~~~~ 79 (442)
..++.+|+||||.||||+ .+.||.++||++.+++++..++++.+ .|. -.++|.+.... ++..+++++...+
T Consensus 72 l~kvavv~LaGG~GTRLG---~~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~~~f 148 (378)
T d2icya2 72 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNS 148 (378)
T ss_dssp HTTEEEEEEECCBSGGGT---CCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGTTS
T ss_pred hCCEEEEEecCCcccccC---CCCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHhccC
Confidence 367899999999999997 78999999998444999999999875 343 36777777554 5888888764323
Q ss_pred CCCccc-CCceEE--------EecccccCCcCCCccccChHHHHHHhhh--hhcCCCCCccCeEEEEcCCeeeecCHHHH
Q 013483 80 GSGVTF-GDGCVE--------VLAATQTPGEAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDYMDF 148 (442)
Q Consensus 80 ~~~~~~-~~~~v~--------i~~~~~~~~~~~~~~~~G~~~al~~~~~--~l~~~~~~~~~~~lv~~gD~i~~~~l~~~ 148 (442)
+....+ ....+. .+..... .+...-.|.|.|+....... .++.+...+.+++.+.+.|.+....-..+
T Consensus 149 g~~i~~f~Q~~~P~~~~~~~~~~~~~~~-~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~~ 227 (378)
T d2icya2 149 NVDIHTFNQSKYPRVVADEFVPWPSKGK-TDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTI 227 (378)
T ss_dssp SSCEEEEECCCEECEETTTTEEGGGGTC-CSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHH
T ss_pred CCceEEEEecccccccCCcccccccccC-CCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchHH
Confidence 322111 001010 0000000 00001125688777765432 23322223468999999999765444577
Q ss_pred HHHHHHcCCcEEEEEeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEE
Q 013483 149 VQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLF 228 (442)
Q Consensus 149 l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~ 228 (442)
+..|..+++++++-+.+...++...-..+..|..-+++.+.+.|.+...+.... ..-.+.+++.+.|
T Consensus 228 lG~~~~~~~~~~~kvv~Kt~~dek~G~l~~~dg~~~vvEyse~p~e~~~~~~~~-------------~~~~~~N~nn~~~ 294 (378)
T d2icya2 228 LKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSI-------------EKFKIFNTNNLWV 294 (378)
T ss_dssp HHHHHHHTCSEEEEEEECCTTCCSSCEEEEETTEEEEECGGGSCGGGHHHHHSS-------------SSCCEEEEEEEEE
T ss_pred HHHHHhcCCcceeEEEecCCCCCceeEEEEECCceeeeehhcCChhHHhhhcCC-------------cCcceeeeeeeee
Confidence 888999999999988876554333333333343334555555544321110000 0123468999999
Q ss_pred eHHHHHHHHhhhCCCCccc-------------ccchhhhccc-ccceEEEEec-ceeeecCChHHHHHHhhhh
Q 013483 229 KKEILLNLLRWRFPTANDF-------------GSEIIPASAN-EQFLKAYLFN-DYWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 229 ~~~~l~~~l~~~~~~~~~~-------------~~~~l~~~i~-~~~i~~~~~~-g~~~di~t~~~~~~an~~~ 286 (442)
+-+.+.++++......... .+.++-+++. -.+..++.++ ..+.-+.++.|++.+...+
T Consensus 295 ~l~~l~~~~~~~~~~l~~~~~~K~~~~~~~iqlE~~i~d~~~~~~~~~~~eV~R~rF~PvKn~sDll~~~sd~ 367 (378)
T d2icya2 295 NLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFLPVKASSDLLLVQSDL 367 (378)
T ss_dssp EHHHHHHHHHTTCCCCCCBCCEEEETTEEEECCBCCGGGGGGGSTTCEEEECCGGGCCBCCSHHHHHHHHSTT
T ss_pred eHHHHHHHHhhccCCCceEecCcCCCCCCeeehhhHHHHHHHhCCCcEEEEecccccCCCCChHHHHHHhhce
Confidence 9999988876422110000 0112222221 1223333332 4577888888887665543
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=99.03 E-value=3.6e-10 Score=100.07 Aligned_cols=40 Identities=10% Similarity=0.257 Sum_probs=19.5
Q ss_pred eEEcCCCEEeceEE-eeeEEcCCcEECCCCEEeceEEECCc
Q 013483 322 SIISHGSFITSSFI-EHSVVGIRSRINANVHLKDTMMLGAD 361 (442)
Q Consensus 322 ~~i~~~~~i~~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~ 361 (442)
++|+.++++-++.+ ..+.||++|.|..++.++.++.+|++
T Consensus 115 ayI~~~vVlmps~VNigA~ig~~~midt~a~vgs~aqIG~~ 155 (274)
T d3tdta_ 115 AFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN 155 (274)
T ss_dssp CEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTT
T ss_pred cEECCCcEEeeeEeccccEEcCCcEEcccceecceeEECCC
Confidence 44444444434444 24455555555555555555555554
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.03 E-value=4.3e-10 Score=95.85 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=61.8
Q ss_pred cccccCccCCCceecCCceeeeEEcCCCEEe-ceEE----eeeEEcCCcEECCCCEEece----EEECCccccchhhhhh
Q 013483 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI----EHSVVGIRSRINANVHLKDT----MMLGADFYETDAEVAS 371 (442)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i----~~~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~ 371 (442)
.+.+++.|.+.+.+.+ ++.||++|.|+ .+.| ..+++++++.+.+.+.+..+ +..+.+
T Consensus 12 ~I~~~~~I~~~a~I~g----~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~---------- 77 (173)
T d1v3wa_ 12 RIHPSAFVDENAVVIG----DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEY---------- 77 (173)
T ss_dssp EECTTCEECTTSEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSS----------
T ss_pred EECcCcEECCCCEEeC----ceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcc----------
Confidence 3444444444444422 45566666665 4444 24566777777766666432 222222
Q ss_pred hhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCcc
Q 013483 372 LLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 441 (442)
Q Consensus 372 ~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~ 441 (442)
+.+........+.||++|.||.++++.. ..+||++++||+|+.| .+++.|+++++
T Consensus 78 --------~~~~~~~~~~~~~Ig~~~~ig~~~~i~~------gv~Ig~~~vIgagsvV-~~~~~i~~~~i 132 (173)
T d1v3wa_ 78 --------VTIGHNAMVHGAKVGNYVIIGISSVILD------GAKIGDHVIIGAGAVV-PPNKEIPDYSL 132 (173)
T ss_dssp --------CEECTTCEEESCEECSSEEECTTCEECT------TCEECSSEEECTTCEE-CTTCEECTTEE
T ss_pred --------eeeeeeeeeeeeecCCcccccceeeecC------CEEEcceeEEcCCcEE-eCCeEeCCCCE
Confidence 3444444445677777777777777764 4566777777777544 45555555554
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=7.6e-11 Score=101.15 Aligned_cols=104 Identities=16% Similarity=0.218 Sum_probs=64.2
Q ss_pred CccCCCceec-CCceeeeEEcCCCEEe-ceEEe---eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcce
Q 013483 306 RRNLPPSKID-DSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV 380 (442)
Q Consensus 306 ~~~~~~~~i~-~~~i~~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (442)
..+.+|...+ +. +..||++++|+ .+.+. ..+||++|.|++++.|......++. +
T Consensus 59 ~~i~~p~~~~~G~---ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~------------------~ 117 (182)
T d1ocxa_ 59 AYIEPTFRCDYGY---NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDP------------------V 117 (182)
T ss_dssp EEECSCEEESSST---TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSH------------------H
T ss_pred eEEECCEEEEecc---ceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccce------------------e
Confidence 3455665542 22 56777777777 55552 4689999999999999888877663 3
Q ss_pred EeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 381 GIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 381 ~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
....++.+. .++||++|.||.++++.. ..+||+++.||+|++| |.+++++
T Consensus 118 ~~~~~~~~~~~v~Ig~~~~iG~~~~I~~------Gv~IG~~~vIgagsvV~kdvp~~~i~ 171 (182)
T d1ocxa_ 118 ARNSGAELGKPVTIGNNVWIGGRAVINP------GVTIGDNVVVASGAVVTKDVPDNVVV 171 (182)
T ss_dssp HHTTTCBEECCEEECTTCEECTTCEECT------TCEECTTCEECTTCEECSCBCSSEEE
T ss_pred eeeccceEcceeEECceEeeCceeeccC------cEEECCCCEECCCCEEccCCCCCeEE
Confidence 344444444 355666666666666643 3455566666666666 5555544
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.98 E-value=1.1e-09 Score=96.97 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=45.9
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEEC
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIG 400 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig 400 (442)
++||++|.|. ..++||..+.||+++.|+..+.+|.. +...+..|+.|+++|.|+ +|.|-+++.||
T Consensus 132 A~ig~~~mid----t~a~vgs~aqIG~~vhis~g~~igGv----------lep~~~~p~iIed~~~IGa~s~v~egv~Vg 197 (274)
T d3tdta_ 132 AYVDEGTMVD----TWATVGSCAQIGKNVHLSGGVGIGGV----------LEPLQANPTIIEDNCFIGARSEVVEGVIVE 197 (274)
T ss_dssp CEECTTCEEC----TTEEECTTCEECTTCEECTTCEECCS----------BTTBCSSCCEECTTCEECTTCEECTTCEEC
T ss_pred cEEcCCcEEc----ccceecceeEECCCeEECCCcEEEec----------cccCCCCCcEEecCcEeccCceEecCEEec
Confidence 4445544444 26777777777777777777766653 112223456777777776 67777777777
Q ss_pred CCeEEcc
Q 013483 401 KNVIIAN 407 (442)
Q Consensus 401 ~~~~~~~ 407 (442)
++++++.
T Consensus 198 ~~avi~~ 204 (274)
T d3tdta_ 198 EGSVISM 204 (274)
T ss_dssp TTCEECT
T ss_pred CceEecc
Confidence 7777765
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=9.9e-10 Score=94.00 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=41.7
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+.||++|.|+ +|.|+.+++++..+...+...+....+||+++|||.+++| ||++|+||+||+|
T Consensus 93 I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv~IG~~~vIgagsvV 161 (182)
T d1ocxa_ 93 IRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVV 161 (182)
T ss_dssp EEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred EEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCcEEECCCCEECCCCEE
Confidence 4555555554 4555555555544444444444556788888888888887 8999999999875
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.96 E-value=1.2e-10 Score=102.12 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=17.0
Q ss_pred eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 390 ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 390 ~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
.++||++|.||.++++.. ..+||+++.||+|++|
T Consensus 113 ~v~IGd~v~IG~~~~I~~------gv~IG~~~~IgagSvV 146 (203)
T d1mr7a_ 113 DTIIGNDVWIGKDVVIMP------GVKIGDGAIVAANSVV 146 (203)
T ss_dssp CEEECSSCEECTTCEECT------TCEECTTCEECTTCEE
T ss_pred CeEECCEEEECCceeEEe------EEEEcCCCEEecCeEE
Confidence 344555555555555442 3345555555555555
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.91 E-value=9.5e-10 Score=89.61 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=29.7
Q ss_pred cCccCCCceecCCceeeeEEcCCCEEe-ceEEeeeEEcCC
Q 013483 305 SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIR 343 (442)
Q Consensus 305 ~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~ 343 (442)
++.+++++.+.++.+.++.||++|.|+ ++.|+++++.++
T Consensus 14 ~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~ 53 (135)
T d1yp2a1 14 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGA 53 (135)
T ss_dssp EEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCC
T ss_pred eCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECC
Confidence 466888888877777788899999988 777766655544
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.88 E-value=1.1e-08 Score=86.75 Aligned_cols=100 Identities=16% Similarity=0.282 Sum_probs=54.8
Q ss_pred EEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec---eEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCc
Q 013483 323 IISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNA 397 (442)
Q Consensus 323 ~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~ 397 (442)
.|+++|+|. .+.| .+++||++|.|++++.|.. .+.++++ +.+++.+.+..+ ....+
T Consensus 12 ~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~------------------~~i~~~~~~~~~-~~~~~ 72 (173)
T d1v3wa_ 12 RIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKY------------------SNVQDNVSIHTS-HGYPT 72 (173)
T ss_dssp EECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECB-TTBCE
T ss_pred EECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccc------------------cccccccccccc-cCCCc
Confidence 455555555 4444 4788899999999988864 4445544 455555544211 11222
Q ss_pred EECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 398 RIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 398 ~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.++.++.... ........||++++||.++.| ||++++||+||+|
T Consensus 73 ~~~~~~~~~~-~~~~~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV 121 (173)
T d1v3wa_ 73 EIGEYVTIGH-NAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVV 121 (173)
T ss_dssp EECSSCEECT-TCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEE
T ss_pred ccCcceeeee-eeeeeeeecCCcccccceeeecCCEEEcceeEEcCCcEE
Confidence 3333333321 122223456666666666554 6777777777764
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.87 E-value=5.9e-09 Score=90.27 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=21.4
Q ss_pred ccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEEeeeEEcCCcEEC
Q 013483 302 IYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRIN 347 (442)
Q Consensus 302 ~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~ 347 (442)
+.+++++++.+.+ +++.|. ++.||++|+|+ .+.+.++.||+++.|.
T Consensus 11 I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~ 59 (196)
T d1g97a1 11 IDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVIT 59 (196)
T ss_dssp ECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEEC
T ss_pred ECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCcccc
Confidence 4444444444444 222222 45666666666 4444444555544443
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.69 E-value=2e-08 Score=89.51 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=17.4
Q ss_pred ceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 414 ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 414 ~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+.+||+++|||+|++| ||++++||+||+|
T Consensus 189 ~~~Ig~~v~IGaga~Ilg~v~IG~~a~IgAgsvV 222 (241)
T d1ssqa_ 189 HPKVREGVMIGAGAKILGNIEVGKYAKIGANSVV 222 (241)
T ss_dssp SCEECTTCEECTTCEEESSCEECTTCEECTTCEE
T ss_pred CCccCCCeEECCCCEEcCCcEECCCCEECCCCEE
Confidence 3456666666666655 6666666666653
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.61 E-value=6.7e-08 Score=90.33 Aligned_cols=50 Identities=8% Similarity=0.169 Sum_probs=24.0
Q ss_pred eeEeCCCcEECCCeEEccC-CCcccceeeCCCeEEccCcEE-----EcCCcEEcCC
Q 013483 390 ECIIDKNARIGKNVIIANS-EGIQEADRSAEGFYIRSGVTV-----ILKNSVITDG 439 (442)
Q Consensus 390 ~~~ig~~~~ig~~~~~~~~-~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~ 439 (442)
++.|+++|.||.++.+... ..+.++.+|+++++|+.++.| |++++.|++.
T Consensus 241 ~~~i~~~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~~~I~~~v~i~~~a~v~a~ 296 (320)
T d2f9ca1 241 NCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAF 296 (320)
T ss_dssp SEEECTEEEECSSCEEESSSEEECSEEEECSSCEEESSEEECSEEEECSSCEEECC
T ss_pred eccccCceEECCCeEEeCCeeEECCceEECCCcEEcccCEEeCCCEECCCeEEEEe
Confidence 3444444444444444322 234444455555555555444 5555555443
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.59 E-value=3.1e-08 Score=86.19 Aligned_cols=30 Identities=13% Similarity=0.250 Sum_probs=18.7
Q ss_pred cceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 413 EADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 413 ~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
..++||+++|||++++| ||++|+|||||+|
T Consensus 112 g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV 146 (203)
T d1mr7a_ 112 GDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVV 146 (203)
T ss_dssp CCEEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred cCeEECCEEEECCceeEEeEEEEcCCCEEecCeEE
Confidence 34556666666666665 6666666666653
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=4.3e-07 Score=78.54 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=19.6
Q ss_pred eEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEEC
Q 013483 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLG 359 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~ 359 (442)
..||++++|+ .+.| .+++||++|+|++++.|+++++.+
T Consensus 15 v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~ 54 (201)
T d2oi6a1 15 LTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGD 54 (201)
T ss_dssp EEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECT
T ss_pred EEECCCCEECCCCEECCceEECCCcEECCCEEEeeeccCC
Confidence 3344444444 3333 256666666666666665555543
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.47 E-value=5.2e-08 Score=84.95 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=26.8
Q ss_pred eeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEEc
Q 013483 389 KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVIT 437 (442)
Q Consensus 389 ~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v~ 437 (442)
+.++||++|.||.+++|.. ..+||++++||+|++| +.+++++.
T Consensus 107 g~v~Igd~v~IG~~s~I~~------gv~IG~~~vIgagSvVtkdvp~~si~~ 152 (208)
T d1xata_ 107 GDTLIGHEVWIGTEAMFMP------GVRVGHGAIIGSRALVTGDVEPYAIVG 152 (208)
T ss_dssp CCEEECTTCEECTTCEECT------TCEECTTCEECTTCEECSCBCTTEEEE
T ss_pred CCEEEcCCeEECccccccC------CeEeCCCCEEeCceEEeecCCcCcEEE
Confidence 3566666776666666653 4566667777777666 45555443
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.40 E-value=5e-07 Score=80.28 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=40.3
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCccccee
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADR 416 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~ 416 (442)
+.+||+++.|++++.|..++.++... ....-+..+||+||.||+|++|.. ..+
T Consensus 157 givig~~~~ig~~~~i~~~v~~~~~~---------------------~~~~~~~~~Ig~~v~IGaga~Ilg------~v~ 209 (241)
T d1ssqa_ 157 GIVVGETSVIENDVSILQGVTLGGTG---------------------KESGDRHPKVREGVMIGAGAKILG------NIE 209 (241)
T ss_dssp TCEECTTCEECTTCEECTTCEEECCS---------------------SSCSSCSCEECTTCEECTTCEEES------SCE
T ss_pred eEEEeccceecCCeeecccccccccc---------------------cCCCCCCCccCCCeEECCCCEEcC------CcE
Confidence 46777777777777776666665420 000002244555556666665543 345
Q ss_pred eCCCeEEccCcEE---EcCCcEEc
Q 013483 417 SAEGFYIRSGVTV---ILKNSVIT 437 (442)
Q Consensus 417 ~~~~~~i~~~~~v---i~~~~~v~ 437 (442)
||+++.||+|++| +.+++++.
T Consensus 210 IG~~a~IgAgsvV~kdVp~~~vv~ 233 (241)
T d1ssqa_ 210 VGKYAKIGANSVVLNPVPEYATAA 233 (241)
T ss_dssp ECTTCEECTTCEECSCBCTTCEEE
T ss_pred ECCCCEECCCCEECCCCCCCCEEE
Confidence 5666666666666 55555443
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.37 E-value=1.3e-06 Score=81.28 Aligned_cols=52 Identities=10% Similarity=0.125 Sum_probs=33.1
Q ss_pred eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE------EcCCcEEcCCcc
Q 013483 390 ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV------ILKNSVITDGFV 441 (442)
Q Consensus 390 ~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v------i~~~~~v~~~~~ 441 (442)
++.++.++.|+.++.+.+...+..+..|++++.|..+++. |+.++.|++++.
T Consensus 223 ~~~i~~~~~Ig~~a~I~g~~~i~~~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~~~ 280 (320)
T d2f9ca1 223 IPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEIL 280 (320)
T ss_dssp CCEECSSCEECSSCEEESSEEECTEEEECSSCEEESSSEEECSEEEECSSCEEESSEE
T ss_pred ccccccccccCcceeeeeeccccCceEECCCeEEeCCeeEECCceEECCCcEEcccCE
Confidence 3455666666666666666666677778888887666543 555555555543
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.35 E-value=2.8e-07 Score=80.16 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=21.9
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCCCcc
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQ 412 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~ 412 (442)
+.||++|.|+ +|.|.++++||++|+|+.+..+.
T Consensus 109 v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVt 142 (208)
T d1xata_ 109 TLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVT 142 (208)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EEEcCCeEECccccccCCeEeCCCCEEeCceEEe
Confidence 6777777776 67777777777777666655444
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=98.10 E-value=2.1e-05 Score=76.52 Aligned_cols=218 Identities=17% Similarity=0.174 Sum_probs=124.0
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceee---cCccceehhhhhhhhhc----------CC-cEEEEEeccCh-hhHHH
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCINS----------GI-NKVYILTQYNS-ASLNR 71 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi---~g~~pli~~~l~~l~~~----------gi-~~i~iv~~~~~-~~i~~ 71 (442)
.++.+|+||||.||||+ ...||.++|| .++ ++++..++++.+. +. -.++|.+.... +...+
T Consensus 101 gkvavvllaGG~GTRLG---~~~pK~~~~v~~~~~k-sllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~ 176 (501)
T d1jv1a_ 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (501)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CCEEEEEECCCccccCC---CCCCceeeeeccCCCC-cHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHH
Confidence 57899999999999998 8899999998 456 9999988876552 22 35777777554 68888
Q ss_pred HHHhhccCCCCcc----cCCceEEEeccccc----CCcCCCccccChHHHHHHhhh--hhcCCCCCccCeEEEEcCCeee
Q 013483 72 HLARAYNYGSGVT----FGDGCVEVLAATQT----PGEAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLY 141 (442)
Q Consensus 72 ~~~~~~~~~~~~~----~~~~~v~i~~~~~~----~~~~~~~~~~G~~~al~~~~~--~l~~~~~~~~~~~lv~~gD~i~ 141 (442)
++++.-.|+-... |....+..+..+.. ....-...|.|.|+....... .++++...+.+++.+.+.|.+.
T Consensus 177 ~l~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l 256 (501)
T d1jv1a_ 177 FFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNIL 256 (501)
T ss_dssp HHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTT
T ss_pred HHHhccccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCcc
Confidence 8876432332210 11111111110000 000001124566555544332 2322222335799999999854
Q ss_pred e-cCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccce
Q 013483 142 R-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYI 220 (442)
Q Consensus 142 ~-~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 220 (442)
. ..--.++..+...++++.+-+.+...+ .+.-|.+.. .+|+.. +.|...-+.......+ ....+ .-..
T Consensus 257 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~-~e~~G~l~~-~dg~~~-vvEysel~~~~~~~~~------~~g~l--~f~~ 325 (501)
T d1jv1a_ 257 VKVADPRFIGFCIQKGADCGAKVVEKTNP-TEPVGVVCR-VDGVYQ-VVEYSEISLATAQKRS------SDGRL--LFNA 325 (501)
T ss_dssp CCTTCHHHHHHHHHTTCSEEEEEEECCST-TCSCCEEEE-ETTEEE-EECGGGSCHHHHHCBC------TTSSB--SSCE
T ss_pred ccccCHHHHHHHHhcccceeEEEEEcCCC-CcccceEEE-ECCeEE-EEEeccCCHHHHhhcc------CCCcc--cccc
Confidence 3 333467888888999999888776543 234455554 245433 3444432221000000 00000 1134
Q ss_pred eeeeEEEEeHHHHHHHHhh
Q 013483 221 ASMGVYLFKKEILLNLLRW 239 (442)
Q Consensus 221 ~~~Giy~~~~~~l~~~l~~ 239 (442)
.++..++|+-++++++++.
T Consensus 326 ~Ni~~~~fsl~fl~~~~~~ 344 (501)
T d1jv1a_ 326 GNIANHFFTVPFLRDVVNV 344 (501)
T ss_dssp EEEEEEEEEHHHHHHHHHT
T ss_pred cceeheeeEHHHHHHHHHh
Confidence 6888999999999887754
|
| >d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Exostosin domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.08 E-value=0.69 Score=38.27 Aligned_cols=104 Identities=15% Similarity=0.049 Sum_probs=61.3
Q ss_pred ceeecCccceehhhhhhhhhcCC-cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccChH
Q 013483 33 AVPIGGAYRLIDVPMSNCINSGI-NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~gi-~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~ 111 (442)
++|.-|++..|..+|+.+.+... ++++||....++.-.+.+.+.+ ... ... + +. ..+. .|.+
T Consensus 8 ii~tyn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~--~~~---~~~-~-~~-~~~~---------~g~~ 70 (265)
T d1omza_ 8 IMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSL--GPH---PIP-V-IF-KPQT---------ANKM 70 (265)
T ss_dssp EEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHT--CCC---SSC-E-EE-EECS---------SCCG
T ss_pred EEEcCCCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHh--ccc---ceE-E-EE-ecCC---------CCch
Confidence 45666765688899999987654 4566665544432222332222 111 000 1 11 1121 3666
Q ss_pred HHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcE
Q 013483 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADI 159 (442)
Q Consensus 112 ~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~ 159 (442)
.+.-.+..... .+.++++.+|.+...+ +..+++.+.+.+...
T Consensus 71 ~a~n~~~~~a~------ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 113 (265)
T d1omza_ 71 RNRLQVFPEVE------TNAVLMVDDDTLISAQDLVFAFSIWQQFPDQI 113 (265)
T ss_dssp GGGGSCCTTCC------SSEEEEECTTEEECHHHHHHHHHHHTTSTTSE
T ss_pred hhhhhhHHhCC------cCEEEEeCcccCCCHHHHHHHHHHHHhCCCcc
Confidence 67666665554 5899999999988776 778888776665543
|