Citrus Sinensis ID: 013530

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
MPEVISVEENERLRSTDFEICEEEKRRSRSRYLSKKAMSASTRLTHSLRRRGRRVSDSRCAPISIEDVRDAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGTCSCPNEGGCLKSNKGPWSDPGIMKLVHAGNAMCSRKTKRSSDFDDLEIKLFSSKVANSEKSSADSTLDVRSNTSGFIKLVPLNDNGRMSEPTSTSSVAEQTDVAGVHEAISTNRLPHGIISSIKLSSRISD
ccccccccHHHHHccccccccHHHHHHccccccccccccccHHHcHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHHHHHHccHHHHcccEEEEEccccHHHHHHHHcccccccccccEEEEccccHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHcccEEEEEcccccEEEEEcHHHccHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHccHHHHccEEEcccccHHHHcccccccccEHHHcccEcccHHHccccccccccccHHHHHHHHcccccccccEEEEccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccHHHHHcccc
MPEVISVeenerlrstdfeICEEEKRRSRSRYLSKKAMSASTRLTHSLRrrgrrvsdsrcapisiEDVRDAAEEKAVNGFRNALIardmlpsrhdDYHTMLRFLKARKFDIDKTFQMWVEMLNWRkengvdtimqDFVYEEydevqscyphgyhgvdkegrpvyierlgqidpsklmscTTVERFLKYHVQGFEKtfsekfpacsiaakrhidstiTILDVQGVNWMSFGKVAHDLVMRIQkidgdnypeILHQMFIVNAGSGFKLVWNtakgfldpkttAKIQVLGYKFHDKLLEVidssqlpdflggtcscpneggclksnkgpwsdpgiMKLVHAGnamcsrktkrssdfddlEIKLFSSKVansekssadstldvrsntsgfiklvplndngrmseptstssvaeqtdvagvheaistnrlphgiissiklssrisd
mpevisveenerlrstdfeiceeekrrsrsrylskkamsastrlthslrrrgrrvsdsrcapisiedvrdaAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLgqidpsklmSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGTCSCPNEGGCLKSNKGPWSDPGIMKLVHAGNAMCSrktkrssdfddLEIKLFSskvansekssadstldvrsntsgfiklvplndngrMSEPTSTSSVAEQTDVAGVHeaistnrlphgiissiklssrisd
MPEVISVEENERLRSTDFEICeeekrrsrsrylskkAMsastrlthslrrrgrrvsdsrCAPISIEDVRDAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGTCSCPNEGGCLKSNKGPWSDPGIMKLVHAGNAMCSRKTKRSSDFDDLEIKLFSSKVANSEKSSADSTLDVRSNTSGFIKLVPLNDNGRMSEPTSTSSVAEQTDVAGVHEAISTNRLPHGiissiklssrisD
***************************************************************************AVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGTCSCPNEGGCLKSNKGPWSDPGIMKLVHAGN*****************************************************************************************************
************************************************************************EEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGTCSCPNEGGCLKSNKGPWSDPGIMKLVHA****************************************************************************GVHEAISTN******************
MPEVISVEENERLRSTDFEIC*************************************RCAPISIEDVRDAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGTCSCPNEGGCLKSNKGPWSDPGIMKLVHAGNAMCSRKTKRSSDFDDLEIKLFSSK***************RSNTSGFIKLVPLNDNG**************TDVAGVHEAISTNRLPHGIISSIKLSSRISD
******************************RYLSKKAMSASTRLTHSLRRR***VSDSRCAPISIEDVRDAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGTCSCPNEGGCLKSNKGPWSDPGIMKLVHAGNAMCSRKTKRSSDF************************************************************AGVHEAISTNRLPHGII***********
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MPEVISVEENERLRSTDFEICEEEKRRSRSRYLSKKAMSASTRLTHSLRRRGRRVSDSRCAPISIEDVRDAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGTCSCPNEGGCLKSNKGPWSDPGIMKLVHAGNAMCSRKTKRSSDFDDLEIKLFSSKVANSEKSSADSTLDVRSNTSGFIKLVPLNDNGRMSEPTSTSSVAEQTDVAGVHEAISTNRLPHGIISSIKLSSRISD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query441 2.2.26 [Sep-21-2011]
Q10137286 Sec14 cytosolic factor OS yes no 0.528 0.814 0.421 5e-49
P46250301 SEC14 cytosolic factor OS N/A no 0.532 0.780 0.415 3e-44
P45816492 SEC14 cytosolic factor OS yes no 0.530 0.475 0.399 6e-44
P24280304 SEC14 cytosolic factor OS yes no 0.585 0.848 0.381 2e-43
P53989302 SEC14 cytosolic factor OS yes no 0.582 0.850 0.383 3e-43
P24859301 SEC14 cytosolic factor OS yes no 0.582 0.853 0.386 6e-43
Q75DK1308 SEC14 cytosolic factor OS yes no 0.535 0.766 0.401 2e-42
P33324310 CRAL-TRIO domain-containi no no 0.569 0.809 0.364 1e-38
Q92503715 SEC14-like protein 1 OS=H yes no 0.487 0.300 0.333 3e-27
O43304696 SEC14-like protein 5 OS=H no no 0.498 0.316 0.315 2e-26
>sp|Q10137|SEC14_SCHPO Sec14 cytosolic factor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec14 PE=4 SV=1 Back     alignment and function desciption
 Score =  195 bits (496), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 100/237 (42%), Positives = 144/237 (60%), Gaps = 4/237 (1%)

Query: 93  RHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDEVQSCYPHG 152
           R DD  T+LRFL+ARKF++ ++ +M+++   WRKE GVD ++++F Y+E + V   YP  
Sbjct: 47  RLDD-ATLLRFLRARKFNLQQSLEMFIKCEKWRKEFGVDDLIKNFHYDEKEAVSKYYPQF 105

Query: 153 YHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHI 212
           YH  D +GRPVY+E+LG ID  KL   TT ER ++  V  +E    ++FPACS  A   I
Sbjct: 106 YHKTDIDGRPVYVEQLGNIDLKKLYQITTPERMMQNLVYEYEMLALKRFPACSRKAGGLI 165

Query: 213 DSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAK 272
           +++ TI+D++GV   S   V +  + +   I  D YPE + + +++NA  GF   +N  K
Sbjct: 166 ETSCTIMDLKGVGITSIHSV-YSYIRQASSISQDYYPERMGKFYVINAPWGFSSAFNLIK 224

Query: 273 GFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGTCSCPNEGGCLKSNKGPWSD 329
           GFLD  T  KI +LG  +   LLE I +  LP  LGG C CP  GGC  S+ GPW +
Sbjct: 225 GFLDEATVKKIHILGSNYKSALLEQIPADNLPAKLGGNCQCP--GGCELSDAGPWHE 279
Has a direct role in controlling cell septation and in forespore membrane formation.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|P46250|SEC14_CANAL SEC14 cytosolic factor OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC14 PE=2 SV=1 Back     alignment and function description
>sp|P45816|SEC14_YARLI SEC14 cytosolic factor OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|P24280|SEC14_YEAST SEC14 cytosolic factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC14 PE=1 SV=3 Back     alignment and function description
>sp|P53989|SEC14_CANGA SEC14 cytosolic factor OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC14 PE=3 SV=1 Back     alignment and function description
>sp|P24859|SEC14_KLULA SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|Q75DK1|SEC14_ASHGO SEC14 cytosolic factor OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|P33324|YKJ1_YEAST CRAL-TRIO domain-containing protein YKL091C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL091C PE=1 SV=2 Back     alignment and function description
>sp|Q92503|S14L1_HUMAN SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2 Back     alignment and function description
>sp|O43304|S14L5_HUMAN SEC14-like protein 5 OS=Homo sapiens GN=SEC14L5 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
255560139 598 transporter, putative [Ricinus communis] 0.956 0.705 0.72 1e-170
359479896 597 PREDICTED: uncharacterized protein LOC10 0.956 0.706 0.671 1e-167
297744366 611 unnamed protein product [Vitis vinifera] 0.952 0.687 0.671 1e-167
356524501 740 PREDICTED: uncharacterized protein LOC10 0.938 0.559 0.662 1e-162
356566380 598 PREDICTED: uncharacterized protein LOC10 0.882 0.650 0.701 1e-162
224065355336 predicted protein [Populus trichocarpa] 0.743 0.976 0.771 1e-155
11994666 627 phosphatidylinositol/phosphatidylcholine 0.959 0.674 0.611 1e-151
42565169 579 Sec14p-like phosphatidylinositol transfe 0.959 0.730 0.611 1e-150
297831368 583 hypothetical protein ARALYDRAFT_480002 [ 0.936 0.708 0.624 1e-149
356566269448 PREDICTED: sec14 cytosolic factor-like [ 0.759 0.747 0.732 1e-148
>gi|255560139|ref|XP_002521087.1| transporter, putative [Ricinus communis] gi|223539656|gb|EEF41238.1| transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 306/425 (72%), Positives = 355/425 (83%), Gaps = 3/425 (0%)

Query: 1   MP-EVISVEENERL-RSTDFEICEEEKRRSRSRYLSKKAMSASTRLTHSLRRRGRRVSDS 58
           MP EVI  +E+ER  R  D E  E+++RR +SR L KKAMSASTRLTHSLR+RGRRV+D 
Sbjct: 1   MPGEVIWTQESERAARGMDLENSEDDRRRRKSRSLKKKAMSASTRLTHSLRKRGRRVADC 60

Query: 59  RCAPISIEDVRDAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMW 118
           R A ISI DVRDA EE AVN FR ALI +DMLP RHDDYHT+LRFL+ARKFD+DKT  MW
Sbjct: 61  RFAAISIHDVRDAKEEAAVNAFRQALILKDMLPPRHDDYHTLLRFLRARKFDLDKTLLMW 120

Query: 119 VEMLNWRKENGVDTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMS 178
            EM+NWRK+NGVD+I+QDFVY+EY+EVQ  YPHGYHGVDKEGRPVYIERLG+I+PSKLMS
Sbjct: 121 SEMINWRKDNGVDSIIQDFVYDEYEEVQRYYPHGYHGVDKEGRPVYIERLGKIEPSKLMS 180

Query: 179 CTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVM 238
            TTV+RFLKYHVQGFEKTF+EKFPACSIAAKRHIDSTITILDV G+    FGKVAHDLVM
Sbjct: 181 VTTVDRFLKYHVQGFEKTFTEKFPACSIAAKRHIDSTITILDVHGLVISDFGKVAHDLVM 240

Query: 239 RIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVI 298
           R+QKIDGDNYPE LHQMFIVNAGSGFKL+WNTAKGFLDPKTTAKI VLG KF +KLLE+I
Sbjct: 241 RMQKIDGDNYPETLHQMFIVNAGSGFKLLWNTAKGFLDPKTTAKINVLGNKFQNKLLEII 300

Query: 299 DSSQLPDFLGGTCSCPNEGGCLKSNKGPWSDPGIMKLVHAGNAMCSRKTKRSSDFDDLEI 358
           DSSQLP+FLGG+CSC +EGGCL+S+KGPW++P IMKLVHAG AM  RK K S D DDL+I
Sbjct: 301 DSSQLPEFLGGSCSCLHEGGCLRSDKGPWNNPEIMKLVHAGEAMYLRKMKSSDDDDDLDI 360

Query: 359 KLFSSKVANSEKSSADSTLDVRSNTSGFIKLVPLNDNGRMSEPTSTSSVAEQTDVAGVHE 418
           KL +SKV+ SE   ADS LD   NTSGF++ +P ++ GRM + +S+ S+ E    + V +
Sbjct: 361 KLSASKVSRSEIFPADSGLDTNPNTSGFVQQMPFSEKGRMGDSSSSRSLVEHIP-STVED 419

Query: 419 AISTN 423
           + STN
Sbjct: 420 SSSTN 424

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479896|ref|XP_002271106.2| PREDICTED: uncharacterized protein LOC100265430 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744366|emb|CBI37336.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356524501|ref|XP_003530867.1| PREDICTED: uncharacterized protein LOC100780520 [Glycine max] Back     alignment and taxonomy information
>gi|356566380|ref|XP_003551410.1| PREDICTED: uncharacterized protein LOC100820317 [Glycine max] Back     alignment and taxonomy information
>gi|224065355|ref|XP_002301787.1| predicted protein [Populus trichocarpa] gi|222843513|gb|EEE81060.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|11994666|dbj|BAB02894.1| phosphatidylinositol/phosphatidylcholine transfer protein-like [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42565169|ref|NP_189128.2| Sec14p-like phosphatidylinositol transfer family protein [Arabidopsis thaliana] gi|332643431|gb|AEE76952.1| Sec14p-like phosphatidylinositol transfer family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297831368|ref|XP_002883566.1| hypothetical protein ARALYDRAFT_480002 [Arabidopsis lyrata subsp. lyrata] gi|297329406|gb|EFH59825.1| hypothetical protein ARALYDRAFT_480002 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356566269|ref|XP_003551356.1| PREDICTED: sec14 cytosolic factor-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
TAIR|locus:2087293 579 AT3G24840 [Arabidopsis thalian 0.802 0.611 0.646 2.4e-124
TAIR|locus:2049319 548 SFH3 "SEC14-like 3" [Arabidops 0.782 0.629 0.566 4.6e-105
TAIR|locus:2018416 668 AT1G75370 [Arabidopsis thalian 0.775 0.511 0.560 2e-104
TAIR|locus:2115265 543 SFH12 "AT4G36490" [Arabidopsis 0.637 0.517 0.647 3.2e-104
TAIR|locus:2053114 558 AT2G18180 "AT2G18180" [Arabido 0.641 0.507 0.632 1.4e-103
TAIR|locus:2136303 554 SEC14 "SECRETION 14" [Arabidop 0.804 0.640 0.536 2.3e-103
TAIR|locus:2050019 637 AT2G21520 [Arabidopsis thalian 0.795 0.551 0.539 2.9e-103
TAIR|locus:2136288 614 AT4G39170 [Arabidopsis thalian 0.709 0.509 0.588 6e-103
TAIR|locus:2013134 608 AT1G19650 [Arabidopsis thalian 0.784 0.569 0.537 2.1e-100
TAIR|locus:2139564 554 COW1 "CAN OF WORMS1" [Arabidop 0.639 0.509 0.609 3.2e-97
TAIR|locus:2087293 AT3G24840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1222 (435.2 bits), Expect = 2.4e-124, P = 2.4e-124
 Identities = 238/368 (64%), Positives = 286/368 (77%)

Query:    61 APISIEDVRDAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVE 120
             API IEDVRD  EEKAVN FR AL++ D+LP RHDDYHTMLRFLKAR+FD++KT QMW E
Sbjct:    65 APIVIEDVRDEEEEKAVNVFRKALVSLDLLPPRHDDYHTMLRFLKARRFDLEKTVQMWEE 124

Query:   121 MLNWRKENGVDTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCT 180
             ML WRKENGVDTI+QDFVY+EY+EVQ  YPHGYHGVD+EGRPVYIERLG+IDP KLM  T
Sbjct:   125 MLKWRKENGVDTIIQDFVYDEYEEVQQYYPHGYHGVDREGRPVYIERLGKIDPGKLMKVT 184

Query:   181 TVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRI 240
             T+ERFL+YHVQGFEKTFSEKFPACSIAAKRHI+S+ TI+DV GV+WMSF K+A DLVMR+
Sbjct:   185 TLERFLRYHVQGFEKTFSEKFPACSIAAKRHINSSTTIIDVHGVSWMSFRKLAQDLVMRM 244

Query:   241 QKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDS 300
             QKIDGDNYPE L+QM+I+NAG+GFKLVWNT KGFLDPKTT+KI VLG K+   LLE+ID 
Sbjct:   245 QKIDGDNYPETLNQMYIINAGNGFKLVWNTVKGFLDPKTTSKIHVLGNKYRSHLLEIIDP 304

Query:   301 SQLPDFLGGTCSCPNEGGCLKSNKGPWSDPGIMKLVHAGNAMCSRKTKRSSDFDDLEI-K 359
             S+LP+FLGG C C +EGGC++ NKGPW+DP IMKLV + +AM   K K     ++ E+ K
Sbjct:   305 SELPEFLGGNCKCAHEGGCMRFNKGPWNDPEIMKLVRSRDAMY--KPKEMGLLENGEVAK 362

Query:   360 LFSSKVANSEKSSADSTLDVRSNTSGFIKLVPLNDNGRMSEPTSTSSVAEQTDVAGVHEA 419
             LFS +  N++ SS D    VR   S      P +D     +    S+ AE   V  + ++
Sbjct:   363 LFSLRHVNTDMSSPDGG-HVRERESH-----PEHD-----KRAQLSNQAEAVGVGRMEQS 411

Query:   420 ISTNRLPH 427
              ST+ LP+
Sbjct:   412 DSTSPLPN 419
GO:0005215 "transporter activity" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
TAIR|locus:2049319 SFH3 "SEC14-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018416 AT1G75370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115265 SFH12 "AT4G36490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053114 AT2G18180 "AT2G18180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136303 SEC14 "SECRETION 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050019 AT2G21520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136288 AT4G39170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013134 AT1G19650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139564 COW1 "CAN OF WORMS1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.II.2822.1
hypothetical protein (336 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 2e-40
smart00516158 smart00516, SEC14, Domain in homologues of a S 1e-37
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 8e-34
smart0110048 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom 6e-10
pfam0376548 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma 2e-09
pfam13716149 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain 6e-09
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information 
 Score =  141 bits (357), Expect = 2e-40
 Identities = 61/172 (35%), Positives = 81/172 (47%), Gaps = 15/172 (8%)

Query: 139 YEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFS 198
            EE  E+         G DKEGRPV I R G  D SK +     E  L+Y V   EK   
Sbjct: 1   LEELKELGKVG--YLGGRDKEGRPVLIIRAGNKDLSKSLD---SEELLRYLVYTLEKLLQ 55

Query: 199 EKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIV 258
           E                + I+D++G++          L+ +I KI  DNYPE L  ++I+
Sbjct: 56  EDDEQVE--------GFVVIIDLKGLSLSHLLPDP-SLLKKILKILQDNYPERLKAVYII 106

Query: 259 NAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGT 310
           N    FK++W   K FL  KT  KI  LG    ++LL+ ID  QLP+  GGT
Sbjct: 107 NPPWFFKVLWKIVKPFLSEKTRKKIVFLGSDK-EELLKYIDKEQLPEEYGGT 157

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 441
KOG1471317 consensus Phosphatidylinositol transfer protein SE 100.0
KOG1470324 consensus Phosphatidylinositol transfer protein PD 100.0
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 99.97
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.96
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.93
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.47
PF0376555 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr 98.71
KOG4406 467 consensus CDC42 Rho GTPase-activating protein [Sig 98.17
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-46  Score=376.55  Aligned_cols=269  Identities=45%  Similarity=0.729  Sum_probs=243.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCcccccchhhHhhhhhccc
Q 013530           71 AAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDEVQSCYP  150 (441)
Q Consensus        71 ~~E~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~v~~~~p  150 (441)
                      +.+++.++++| |+..+++++...+|+.+|||||||++||+++|++||.+++.||+++..+.|..++  .....+.+++|
T Consensus        20 ~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~--~~~~~~~~~~~   96 (317)
T KOG1471|consen   20 ESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDF--EEDDELLKYYP   96 (317)
T ss_pred             HHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhcc--ccchhhhhhcc
Confidence            55677777777 9989999997455557999999999999999999999999999999999998762  33344566899


Q ss_pred             ccccccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecCCCCcCCcc
Q 013530          151 HGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFG  230 (441)
Q Consensus       151 ~~~hG~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~G~sl~~~~  230 (441)
                      ++++|+|++|+||++.+.|..|...++..+...++.++++..+|+.+...++.|....+++++|+++|+|++|+++.++.
T Consensus        97 ~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~  176 (317)
T KOG1471|consen   97 QGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLL  176 (317)
T ss_pred             ccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHH
Confidence            99999999999999999999999999999999999999999999999998888887778899999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHhhcCCHhhhcceEEecCCchhHHHccCCCCCCCccCCCC
Q 013530          231 KVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGT  310 (441)
Q Consensus       231 ~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~lVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~LP~~yGGt  310 (441)
                      ...+.++++++.+++++||++++++||||+|++|+++|++|||||+++|++||++++.++.+.|+++|+++.||.+|||+
T Consensus       177 ~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP~~yGG~  256 (317)
T KOG1471|consen  177 KPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLPEEYGGT  256 (317)
T ss_pred             HHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCccccCCC
Confidence            99999999999999999999999999999999999999999999999999999977777899999999999999999999


Q ss_pred             CCCCC---CCCcccCCCCCCCChhhhhhhhcCccc
Q 013530          311 CSCPN---EGGCLKSNKGPWSDPGIMKLVHAGNAM  342 (441)
Q Consensus       311 ~~~~~---~ggc~~~~~gpw~dp~~~~~~~~~~~~  342 (441)
                      |.+.+   .++|..++.+||.++.+.+........
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (317)
T KOG1471|consen  257 CGDLDDPNGGGCDLSDEGPWKEPEIKKGKQEIEEF  291 (317)
T ss_pred             ccccccccCCcCccccccccccccccccccccccc
Confidence            99973   567999999999998877665554443

>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 7e-45
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 6e-40
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 3e-39
1olm_E403 Supernatant Protein Factor In Complex With Rrr-Alph 3e-20
1olm_A403 Supernatant Protein Factor In Complex With Rrr-Alph 3e-20
1o6u_A403 The Crystal Structure Of Human Supernatant Protein 6e-19
1oip_A278 The Molecular Basis Of Vitamin E Retention: Structu 4e-07
1r5l_A262 Crystal Structure Of Human Alpha-tocopherol Transfe 7e-07
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure 
Iteration: 1

 Score =  177 bits (450), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 100/262 (38%), Positives = 146/262 (55%), Gaps = 4/262 (1%)
Query: 70  DAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENG 129
           D+A+EKA+   R  L     +  R DD  T+LRFL+ARKFD+    +M+     WRK+ G
Sbjct: 27  DSAQEKALAELRKLLEDAGFI-ERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84
Query: 130 VDTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYH 189
            DTI+QDF Y+E   +   YP  YH  DK+GRPVY E LG ++  ++   T+ ER LK  
Sbjct: 85  TDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNL 144
Query: 190 VQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYP 249
           V  +E     + PACS AA   ++++ TI+D++G++ +S        V     I  + YP
Sbjct: 145 VWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGIS-ISSAYSVMSYVREASYISQNYYP 203
Query: 250 EILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGG 309
           E + + +I+NA  GF   +   K FLDP T +KI +LG  +  +LL+ I +  LP   GG
Sbjct: 204 ERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGG 263
Query: 310 TCSC-PNEGGCLKSNKGPWSDP 330
                 ++GG   S+ GPW DP
Sbjct: 264 KSEVDESKGGLYLSDIGPWRDP 285
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403 Back     alignment and structure
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278 Back     alignment and structure
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 1e-114
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 1e-109
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 7e-94
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 8e-85
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 3e-71
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 5e-04
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
 Score =  337 bits (866), Expect = e-114
 Identities = 101/267 (37%), Positives = 147/267 (55%), Gaps = 4/267 (1%)

Query: 70  DAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENG 129
           D+A+EKA+   R  L+       R DD  T+LRFL+ARKFD+    +M+     WRK+ G
Sbjct: 27  DSAQEKALAELR-KLLEDAGFIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84

Query: 130 VDTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYH 189
            DTI+QDF Y+E   +   YP  YH  DK+GRPVY E LG ++  ++   T+ ER LK  
Sbjct: 85  TDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNL 144

Query: 190 VQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYP 249
           V  +E     + PACS AA   ++++ TI+D++G++  S   V    V     I  + YP
Sbjct: 145 VWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVM-SYVREASYISQNYYP 203

Query: 250 EILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGG 309
           E + + +I+NA  GF   +   K FLDP T +KI +LG  +  +LL+ I +  LP   GG
Sbjct: 204 ERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGG 263

Query: 310 TCSCP-NEGGCLKSNKGPWSDPGIMKL 335
                 ++GG   S+ GPW DP  +  
Sbjct: 264 KSEVDESKGGLYLSDIGPWRDPKYIGP 290
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query441
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 100.0
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 99.22
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 98.97
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-57  Score=456.94  Aligned_cols=275  Identities=34%  Similarity=0.602  Sum_probs=247.5

Q ss_pred             ccccccccCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCcccccch
Q 013530           60 CAPISIEDVRDAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVY  139 (441)
Q Consensus        60 ~~~~~~ed~~d~~E~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~  139 (441)
                      .++....++ +++|+++|++||+||.+++ ++...|| .+|||||||++||+++|.+||.++++||++++++.+..++.+
T Consensus        27 ~~~g~~~~l-t~~q~~~l~~lR~~l~~~~-~~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~  103 (320)
T 3q8g_A           27 ALPGTPGNL-TKEQEEALLQFRSILLEKN-YKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYEN  103 (320)
T ss_dssp             SCTTSTTCC-CHHHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHH
T ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHHHhcC-CCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence            344444555 6889999999999999988 4566777 599999999999999999999999999999999988776554


Q ss_pred             h------hHhhhhhcccccccccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccC
Q 013530          140 E------EYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHID  213 (441)
Q Consensus       140 ~------el~~v~~~~p~~~hG~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~  213 (441)
                      .      +...+.+++++++||+|++||||+|+++|++|++++++.++.+++++++++.+|.+++..+|+|+...+..++
T Consensus       104 ~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve  183 (320)
T 3q8g_A          104 NKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIE  183 (320)
T ss_dssp             THHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCC
T ss_pred             ccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcc
Confidence            4      3445778899999999999999999999999999887778899999999999999998877888888888899


Q ss_pred             cEEEEEecCCCCcCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHhhcCCHhhhcceEEecCCchhH
Q 013530          214 STITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDK  293 (441)
Q Consensus       214 g~tvIiDl~G~sl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~lVKpfL~~kt~~KI~~lg~~~~~~  293 (441)
                      ++++|+|++|++++++++. +.+++.+++++|++||++|+++||||+|++|+++|++|++||+++|++||+|+++++.+.
T Consensus       184 ~~~~IiD~~g~sl~~~~~~-~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~  262 (320)
T 3q8g_A          184 TSCTVLDLKGISLSNAYHV-LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKE  262 (320)
T ss_dssp             CEEEEEECTTCCHHHHHHT-HHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHH
T ss_pred             eeEEEEECCCCCHHHHHHH-HHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHH
Confidence            9999999999999998753 788999999999999999999999999999999999999999999999999999888899


Q ss_pred             HHccCCCCCCCccCCCCCCCCC-CCCcccCCCCCCCChhhhhhhhc
Q 013530          294 LLEVIDSSQLPDFLGGTCSCPN-EGGCLKSNKGPWSDPGIMKLVHA  338 (441)
Q Consensus       294 L~e~Id~~~LP~~yGGt~~~~~-~ggc~~~~~gpw~dp~~~~~~~~  338 (441)
                      |.++||+++||++|||+++|.+ +|||+.+|.|||+||++++.-..
T Consensus       263 L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~~~~~  308 (320)
T 3q8g_A          263 LLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIGPEGE  308 (320)
T ss_dssp             HHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCCTTCC
T ss_pred             HHhhCChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcCCCCc
Confidence            9999999999999999999987 69999999999999988865433
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 441
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 2e-63
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 1e-52
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 9e-31
d1auaa193 a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl 1e-21
d1olma175 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), 2e-18
d1r5la166 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei 5e-12
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  201 bits (511), Expect = 2e-63
 Identities = 70/197 (35%), Positives = 104/197 (52%), Gaps = 2/197 (1%)

Query: 139 YEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFS 198
           Y+E   +   YP  YH  DK+GRPVY E LG ++  ++   T+ ER LK  V  +E    
Sbjct: 1   YDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQ 60

Query: 199 EKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIV 258
            + PACS AA   ++++ TI+D++G++  S   V    V     I  + YPE + + +I+
Sbjct: 61  YRLPACSRAAGHLVETSCTIMDLKGISISSAYSVM-SYVREASYISQNYYPERMGKFYII 119

Query: 259 NAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGTCSCPN-EG 317
           NA  GF   +   K FLDP T +KI +LG  +  +LL+ I +  LP   GG       +G
Sbjct: 120 NAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESKG 179

Query: 318 GCLKSNKGPWSDPGIMK 334
           G   S+ GPW DP  + 
Sbjct: 180 GLYLSDIGPWRDPKYIG 196
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query441
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 100.0
d1olma3199 Supernatant protein factor (SPF), middle domain {H 100.0
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 99.97
d1olma175 Supernatant protein factor (SPF), N-terminal domai 99.57
d1auaa193 N-terminal domain of phosphatidylinositol transfer 99.43
d1r5la166 Alpha-tocopherol transfer protein {Human (Homo sap 99.27
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-41  Score=315.02  Aligned_cols=190  Identities=35%  Similarity=0.622  Sum_probs=176.9

Q ss_pred             hhhhcccccccccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecCC
Q 013530          144 EVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQG  223 (441)
Q Consensus       144 ~v~~~~p~~~hG~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~G  223 (441)
                      .+.+|||+++||+|++||||+|+++|++|+.++++..+.+++++++++.+|.+++..++.++.....+++++++|+|++|
T Consensus         6 ~~~~~~p~~~~G~Dk~GrpV~~~r~g~~~~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~~g   85 (203)
T d1auaa2           6 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKG   85 (203)
T ss_dssp             HHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred             HHHHHCCCcCCCCCCCCCEEEEEECCCCChHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEEECCC
Confidence            46789999999999999999999999999999998899999999999999999987777666666778999999999999


Q ss_pred             CCcCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHhhcCCHhhhcceEEecCCchhHHHccCCCCCC
Q 013530          224 VNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQL  303 (441)
Q Consensus       224 ~sl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~lVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~L  303 (441)
                      +++++++. ...+++.++++++++||++++++||||+|++|+++|+++++||+++|++||+|+++++.+.|.++||+++|
T Consensus        86 ~s~~~~~~-~~~~~k~~~~~~q~~yPe~l~~i~ivN~P~~~~~~~~~vk~fl~~~t~~KI~~~~~~~~~~L~~~id~~~L  164 (203)
T d1auaa2          86 ISISSAYS-VMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENL  164 (203)
T ss_dssp             CCHHHHHH-HHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSS
T ss_pred             CChHHhhh-HHHHHHHHHHHHHHhChHhhcceEEECCcHHHHHHHHHHHhhcCHHHhhceeecCCCCHHHHHhhCCHhhC
Confidence            99999864 46889999999999999999999999999999999999999999999999999998888999999999999


Q ss_pred             CccCCCCCCCCC-CCCcccCCCCCCCChhhhh
Q 013530          304 PDFLGGTCSCPN-EGGCLKSNKGPWSDPGIMK  334 (441)
Q Consensus       304 P~~yGGt~~~~~-~ggc~~~~~gpw~dp~~~~  334 (441)
                      |.+|||+|.|.+ .|+|+..+.|||+||++.+
T Consensus       165 P~~~GG~~~~~~~~g~~~~~~~~~~~~p~~~~  196 (203)
T d1auaa2         165 PVKFGGKSEVDESKGGLYLSDIGPWRDPKYIG  196 (203)
T ss_dssp             BGGGTSCBCCCGGGCCSTTCCCSGGGCGGGCC
T ss_pred             hHHhCCCCcCCCCCCCccccCCCCCCChhhcC
Confidence            999999999974 4899999999999997763
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure