Citrus Sinensis ID: 013544

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
Protein Sequence
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNLNGHYEKAGNVTETFSSLADSSILENHSSSSNINPSLILDEHGYLSLQSSDMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHcccccccHHHHccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccEEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEEccEEEEccccccccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHccccHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccEEEEEEEccccEEEEEEEEccEEEEccccccccccccEcEEEEEc
Coil and Loop (DISEMBL)
MATLFLSSsfllplsshklwqwhpprkhlsfticcasssssnksssssssssrssrkvksnEELYNDLREFLSTvglseshvpsmkelsahgrddLANIVRRRGYKFIRQLLKsstkpgfngfVAEKslagsciktdlhsdiyslppteslsdpsfvgevspnlnghyekagnvteTFSSladssilenhssssninpslildehgylslqssDMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFatvnhplsedhlgtgvegadfdsseaRRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVagsfngwhhrikmdplpsssiiepirsrkSRLWSTVLWLYPGTYEIKFIVdgqwkvdpqresvtkggicnnilrvi
Flexible Loop (DISEMBL)
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCASssssnksssssssssrssrkvksnEELYNDLREFLSTVGLSESHVPSMkelsahgrddlaNIVRRRGYKFIRQLlksstkpgfnGFVAEKSLAGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNLNGHYEKAGNVTETFSSLADSSILENHSSSSNINPSLILDEHGYLSLQSSDMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALsvlqtkavteinkaeklisdkdeELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHrikmdplpsssiiepirsrksrlwSTVLWLYPGTYEIKFIVDGQWKVDpqresvtkggicnnilrvi
Low Complexity Region (SEG)
MATlflsssfllplssHKLWQWHPPRKHLSFTICCAsssssnksssssssssrssrkvksnEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNLNGHYEKAGNVTETFSSLADssilenhssssninpslilDEHGYLSLQSSDMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDplpsssiiepirsrksrLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Disordered region (IsUnstruct)
***LFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCA**********************************F***********************DLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAGSCIKTDLHSDIYS********************************************************ILDEHGYL*********KVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVN*********************************LKFML******************LALSVLQTKAVTEINKA**LI******LIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILR**
Disordered Region (DISOPRED)
*******SSFLLPLSSHKLWQWHPPRKH***********************************LYNDLREFLSTVGL**********LSAHGRDDLANIVRRRGY************************************************************************************************************************************************************************************************************************************************LSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSS*****RSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Disordered Region (DISEMBL)
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTIC***************************EELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNLNGHYEKAGNVTETFSSLADSSILENHSSSSNINPSLILDEHGYLSLQSSDMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Disordered Region (DISPRO)
**TLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCA***********************SNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEK****************************************************************SS*NINPSL****HGYLSLQSSDMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVN*******LGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMD*LPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNLNGHYEKAGNVTETFSSLADSSILENHSSSSNINPSLILDEHGYLSLQSSDMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAVTExxxxxxxxxxxxxxxxxxxxxLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	441	2.2.26 [Sep-21-2011]
Q9R078	270	5'-AMP-activated protein	yes	no	0.235	0.385	0.293	9e-05
P80386	270	5'-AMP-activated protein	yes	no	0.233	0.381	0.304	0.0001
P78789	298	Uncharacterized protein C	yes	no	0.117	0.174	0.363	0.0002
O43741	272	5'-AMP-activated protein	yes	no	0.167	0.272	0.340	0.0006
Q9Y478	270	5'-AMP-activated protein	no	no	0.224	0.366	0.297	0.0006
Q5BIS9	270	5'-AMP-activated protein	no	no	0.224	0.366	0.289	0.0007
Q9QZH4	271	5'-AMP-activated protein	no	no	0.167	0.273	0.340	0.0007
Q6PAM0	271	5'-AMP-activated protein	no	no	0.167	0.273	0.340	0.0007
Q5R801	270	5'-AMP-activated protein	yes	no	0.224	0.366	0.297	0.0007
P80387	122	5'-AMP-activated protein	no	no	0.165	0.598	0.340	0.0009

>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 22/126 (17%)

Query: 323 TEINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHR 375
            +I  +E++ + + EE +A +  L   +    Q       ++G G+ V ++GSFN W   
Sbjct: 44  ADIFHSEEIKAPEKEEFLAWQHDLEANDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKL 103

Query: 376 IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT-KGGIC 434
               PL          +R    +  +L L  G ++ KF VDGQW  DP    VT + G  
Sbjct: 104 ----PL----------TRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTV 149

Query: 435 NNILRV 440
           NNI++V
Sbjct: 150 NNIIQV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).
Mus musculus (taxid: 10090)

>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 22/125 (17%)

Query: 324 EINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRI 376
           +I   E++ + + EE +A +  L   E    Q       ++G G+ V ++GSFN W    
Sbjct: 45  DIFHTEEMKAPEKEEFLAWQHDLEVNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKL- 103

Query: 377 KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT-KGGICN 435
              PL          +R    +  +L L  G ++ KF VDGQW  DP    VT + G  N
Sbjct: 104 ---PL----------TRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVN 150

Query: 436 NILRV 440
           NI++V
Sbjct: 151 NIIQV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|P78789|YC63_SCHPO Uncharacterized protein C1919.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1919.03c PE=1 SV=2

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 14/66 (21%)

Query: 354 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 413
           I++ G GE+V V GSF+ W  +I++               KS  ++ +L L PGT   KF
Sbjct: 103 IRWRGGGEVVYVTGSFSRWKKKIQL--------------LKSEDYTVLLQLRPGTQRFKF 148

Query: 414 IVDGQW 419
           +VDG W
Sbjct: 149 LVDGIW 154

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)

Query: 354 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 413
           I++S  G+ V ++GSFN W  +I +           I+S     +  +L L  G ++ KF
Sbjct: 81  IRWSEGGKEVFISGSFNNWSTKIPL-----------IKSHND--FVAILDLPEGEHQYKF 127

Query: 414 IVDGQWKVDPQRESVT-KGGICNNILRV 440
            VDGQW  DP    VT + G  NN++ V
Sbjct: 128 FVDGQWVHDPSEPVVTSQLGTINNLIHV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 22/121 (18%)

Query: 328 AEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRIKMDP 380
           +E++ + + EE +A +  L   +    Q       ++G G+ V ++GSFN W       P
Sbjct: 49  SEEIKAPEKEEFLAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKL----P 104

Query: 381 LPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT-KGGICNNILR 439
           L          +R    +  +L L  G ++ KF VDGQW  DP    VT + G  NNI++
Sbjct: 105 L----------TRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQ 154

Query: 440 V 440
           V
Sbjct: 155 V 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 22/121 (18%)

Query: 328 AEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRIKMDP 380
           +E++ + + EE +A +  L   +    Q       ++G G+ V ++GSFN W       P
Sbjct: 49  SEEIKAPEKEEFLAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKL----P 104

Query: 381 LPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT-KGGICNNILR 439
           L          +R    +  +L L  G ++ KF VDGQW  DP    VT + G  NN+++
Sbjct: 105 L----------TRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPVVTSQLGTVNNVIQ 154

Query: 440 V 440
           V
Sbjct: 155 V 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Bos taurus (taxid: 9913)

>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)

Query: 354 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 413
           I++S  G+ V ++GSFN W  +I +           I+S     +  +L L  G ++ KF
Sbjct: 80  IRWSEGGKEVFISGSFNNWSTKIPL-----------IKSHND--FVAILDLPEGEHQYKF 126

Query: 414 IVDGQWKVDPQRESVT-KGGICNNILRV 440
            VDGQW  DP    VT + G  NN++ V
Sbjct: 127 FVDGQWVHDPSEPVVTSQLGTINNLIHV 154

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)

Query: 354 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 413
           I++S  G+ V ++GSFN W  +I +           I+S     +  +L L  G ++ KF
Sbjct: 80  IRWSEGGKEVFISGSFNNWSTKIPL-----------IKSHND--FVAILDLPEGEHQYKF 126

Query: 414 IVDGQWKVDPQRESVT-KGGICNNILRV 440
            VDGQW  DP    VT + G  NN++ V
Sbjct: 127 FVDGQWVHDPSEPVVTSQLGTINNLIHV 154

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Mus musculus (taxid: 10090)

>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 22/121 (18%)

Query: 328 AEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRIKMDP 380
           +E++ + + EE +A +  L   +    Q       ++G G+ V ++GSFN W       P
Sbjct: 49  SEEIKAPEKEEFLAWQRDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKL----P 104

Query: 381 LPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT-KGGICNNILR 439
           L          +R    +  +L L  G ++ KF VDGQW  DP    VT + G  NNI++
Sbjct: 105 L----------TRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQ 154

Query: 440 V 440
           V
Sbjct: 155 V 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Pongo abelii (taxid: 9601)

>sp|P80387|AAKB1_PIG 5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus scrofa GN=PRKAB1 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 15/88 (17%)

Query: 354 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 413
            +++G G+ V ++GSFN W        LP         +R    +  +L L  G ++ KF
Sbjct: 47  FRWTGGGKEVYLSGSFNNW------SKLP--------LTRSHNNFVAILDLPEGEHQYKF 92

Query: 414 IVDGQWKVDPQRESVT-KGGICNNILRV 440
           +VDGQW  DP    VT + G  NNI++V
Sbjct: 93  LVDGQWTHDPSEPVVTSQLGTVNNIIQV 120

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
297739960	471	unnamed protein product [Vitis vinifera]	0.848	0.794	0.522	1e-110
224068793	626	predicted protein [Populus trichocarpa]	0.712	0.501	0.472	1e-76
255556890	612	hypothetical protein RCOM_1354150 [Ricin	0.514	0.370	0.562	2e-76
356545991	622	PREDICTED: uncharacterized protein LOC10	0.616	0.437	0.540	2e-74
449451223	649	PREDICTED: uncharacterized protein LOC10	0.625	0.425	0.466	2e-69
186519755	598	5'-AMP-activated protein kinase-like pro	0.514	0.379	0.524	2e-60
297806299	636	hypothetical protein ARALYDRAFT_487117 [	0.498	0.345	0.505	2e-59
7378624	583	putative protein [Arabidopsis thaliana]	0.385	0.291	0.464	7e-32
168029298	548	predicted protein [Physcomitrella patens	0.367	0.295	0.395	2e-24
297790768	334	hypothetical protein ARALYDRAFT_359028 [	0.176	0.233	0.658	7e-17

>gi|297739960|emb|CBI30142.3| unnamed protein product [Vitis vinifera]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/444 (52%), Positives = 282/444 (63%), Gaps = 70/444 (15%)

Query: 46  SSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGY 105
           +SS    R+ RKVKS++EL ND+REF+S VGL E H+PSMKELS HGR DLANIVRRRGY
Sbjct: 47  ASSIKKPRARRKVKSDQELCNDIREFVSAVGLPEGHLPSMKELSQHGRTDLANIVRRRGY 106

Query: 106 KFIRQLLKSSTKPGFNGFVAEKSLAGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNLN 165
           K I+ LL S+TK   N F   +SL  +   T  + D       ES               
Sbjct: 107 KHIKDLLSSATKTDTNEFDVGESLTENQDATSDYED-------ES--------------T 145

Query: 166 GHYEKAGNVTETFSSLADSSILENHSSSSNINPSLILDEHGYLSLQS--SDMEEKVANFI 223
           G  EKA ++ E     +  SI+E+  +++NI+PS   DE   +   S  S  +EKVA FI
Sbjct: 146 GQDEKAKDLVEDVPLSSKGSIMESGVTNANIDPSFNNDEQSCIRESSTHSSFQEKVAKFI 205

Query: 224 QNGDLDIIEDR--------------------------------------------AMILN 239
           QNG+LD IED                                             A ILN
Sbjct: 206 QNGELDTIEDNDYGILSGAAAEEGKGVIDSENTIELESRPLAELHVEHASSGSNAAKILN 265

Query: 240 GSALTSKQIASFATVNHPLSEDHLGT-GVEGADFDS--SEARRRENQLEIDHLKFMLHQK 296
           GS L S QI    T N PL +D   + G+  ADFD+   E    ENQ+E++HLK MLHQK
Sbjct: 266 GSTLFSDQIVPPVTRNDPLGDDRFSSEGLISADFDNLGIETNEGENQVEVNHLKLMLHQK 325

Query: 297 EMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQY 356
           E+ELS+LK+QIEKEKLAL++LQTKA TEI+KA+K++ +KD EL AAEESLSGL+ V+IQY
Sbjct: 326 ELELSQLKKQIEKEKLALTILQTKAETEISKAQKIVLEKDAELNAAEESLSGLKEVQIQY 385

Query: 357 SGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD 416
           SGDGEIVEVAGSFNGWHHRIKMDP PSSS  EP+ SRKSRLWSTVLWLYPG YEIKF++D
Sbjct: 386 SGDGEIVEVAGSFNGWHHRIKMDPQPSSSSKEPVGSRKSRLWSTVLWLYPGLYEIKFVID 445

Query: 417 GQWKVDPQRESVTKGGICNNILRV 440
           GQW++DPQ E+VT+G I NNILRV
Sbjct: 446 GQWRIDPQSETVTRGTIDNNILRV 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068793|ref|XP_002326201.1| predicted protein [Populus trichocarpa] gi|222833394|gb|EEE71871.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 172/364 (47%), Positives = 222/364 (60%), Gaps = 50/364 (13%)

Query: 124 VAEKSLAGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNLNGHYEKAGNVTETFSSLAD 183
           +A+ +L    +  DL+S+  +  P E+ ++ SF  +V  + +   EK G   E  S  + 
Sbjct: 264 IADSNLGVLNVYPDLNSNEDTSMPVETSANFSFEEKVKYD-SVQDEKVGIGAEEMSLSSG 322

Query: 184 SSILENHSSSSNINPSLILDEHGYLSLQSSDMEEKVANFIQNGDLDIIEDR--------- 234
            S  + +++  NI  S ++D +      +S + EKVA FIQNGDLD IED          
Sbjct: 323 VSDTQYYANVKNI--SGLIDNNNSCMPANSSLVEKVAKFIQNGDLDTIEDNVYGLSNGSG 380

Query: 235 -----------------------------------AMILNGSALTSKQIASFATVNHPLS 259
                                              A  LN +  TS Q+    TV+  L 
Sbjct: 381 SGESKGFREPENMTEDHSKISSEENFENAVGESDTASTLNENLSTSMQVVPSVTVSRALR 440

Query: 260 EDHLGTGVEGADFDSS---EARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSV 316
            +    G+ GAD D     E  +++NQ+EI+HLKF+LHQKE+ELS+LKEQIEKEKLALS 
Sbjct: 441 NESPAEGLAGADVDQDLDIETNKKDNQIEINHLKFILHQKELELSQLKEQIEKEKLALSA 500

Query: 317 LQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRI 376
           LQTKA  EI+KA+KLIS+KD EL+ AEESLSGL  VE+ Y G+GE+VEVAGSFNGWHH +
Sbjct: 501 LQTKAEREISKAQKLISEKDAELLVAEESLSGLVEVEVAYCGNGEMVEVAGSFNGWHHPV 560

Query: 377 KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNN 436
           ++DP PSSSI +   SRKSRLWS +LWLYPG YEIKFIVDG W+VDPQ ESVTKGGICNN
Sbjct: 561 RLDPQPSSSIKDHFGSRKSRLWSAMLWLYPGVYEIKFIVDGHWRVDPQMESVTKGGICNN 620

Query: 437 ILRV 440
           +LRV
Sbjct: 621 VLRV 624

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556890|ref|XP_002519478.1| hypothetical protein RCOM_1354150 [Ricinus communis] gi|223541341|gb|EEF42892.1| hypothetical protein RCOM_1354150 [Ricinus communis]

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/274 (56%), Positives = 180/274 (65%), Gaps = 47/274 (17%)

Query: 215 MEEKVANFIQNGDLDIIEDRA--------------------------------------- 235
           +E+KVA FIQ+GDLD IED                                         
Sbjct: 338 LEDKVAKFIQSGDLDAIEDNVYAILDETAEESKGSSEPENETEIQSETPTSENDKHADNG 397

Query: 236 ----MILNGSALTSKQIASFATVNHPLSEDHL-GTGVEGADFDSS---EARRRENQLEID 287
               + LNGS   SK ++     NHP+  D L   G+   + D     E  +REN +EI+
Sbjct: 398 SNAPLALNGSISISKDVSPPMRANHPVRNDELPAEGLASFNVDKDLDVEISKRENHVEIN 457

Query: 288 HLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLS 347
           HLKFMLHQKE+ELS LKEQIEKEK+ALS LQ KA  EI KA+KLIS+KD EL+AAEESLS
Sbjct: 458 HLKFMLHQKELELSHLKEQIEKEKIALSDLQNKAEMEIKKAQKLISEKDAELLAAEESLS 517

Query: 348 GLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG 407
           GL  V+IQY+GDGEIVEVAGSFNGWHHRIKMDP PSSS+ +P  SRKS+LWS +LWLYPG
Sbjct: 518 GLMEVKIQYNGDGEIVEVAGSFNGWHHRIKMDPQPSSSVRDPAASRKSKLWSIMLWLYPG 577

Query: 408 TYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI 441
            YEIKFIVDG W +DPQ E VT+GGICNN+LRVI
Sbjct: 578 VYEIKFIVDGHWTIDPQGEMVTRGGICNNVLRVI 611

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545991|ref|XP_003541416.1| PREDICTED: uncharacterized protein LOC100805984 [Glycine max]

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 160/296 (54%), Positives = 204/296 (68%), Gaps = 24/296 (8%)

Query: 164 LNGHYEKAGNVTETFSSLADSSILENHSSSSNINP--------SLILDEHGYLSLQSSDM 215
           L G  +   ++ E  ++ ++ S+ EN S  + +N         S  LD    LSL+    
Sbjct: 330 LEGLDDSKDDIAEDVATTSEVSVRENLSDDNRLNSIVHSADSSSTNLDTLANLSLR---- 385

Query: 216 EEKVANFIQNGDLDIIE------DRAMILNGSALTSKQIASFATVN--HPLSEDHLGTGV 267
            EKVANFIQNGDLD +E      D  ++ +G++LTS Q+     ++    L +DHL    
Sbjct: 386 -EKVANFIQNGDLDPVEGTHLPEDNNVMAHGNSLTSNQVVPSGALDLDQSLWDDHLPHED 444

Query: 268 EGADFD---SSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTE 324
              DF+    +EA + +N+ EI+HLKFML+QKE+ELSRLKEQIEKEKLALSVLQTKA  E
Sbjct: 445 LTTDFNKDLDTEAPKVQNESEINHLKFMLYQKELELSRLKEQIEKEKLALSVLQTKAEAE 504

Query: 325 INKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSS 384
           I+KA KLIS+KD EL  AEESLSGL+ V+I++ GDG++VEVAGSFNGWHHRI+MD   S+
Sbjct: 505 ISKARKLISEKDAELHVAEESLSGLKEVQIEFCGDGDVVEVAGSFNGWHHRIEMDLQQST 564

Query: 385 SIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 440
           S I+   SR SR WST+LWLYPG YEIKF+VDG+W  DPQRESVT+G ICNNILRV
Sbjct: 565 SAIDLDGSRSSRCWSTMLWLYPGVYEIKFVVDGKWITDPQRESVTRGHICNNILRV 620

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451223|ref|XP_004143361.1| PREDICTED: uncharacterized protein LOC101203013 [Cucumis sativus] gi|449482584|ref|XP_004156334.1| PREDICTED: uncharacterized protein LOC101225132 [Cucumis sativus]

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 152/326 (46%), Positives = 196/326 (60%), Gaps = 50/326 (15%)

Query: 165 NGHYEKAGNVTETFSSLADSSILENHSSSSNINPSLILDEHGYLSLQSSD---MEEKVAN 221
           N   EK  N  +  S  A+ +I+++ SS  NI+ +L  ++     ++ S+   + EKVA 
Sbjct: 322 NEQVEKEDNCVDGVSLSAEMTIIDDRSSGLNIDRALAHEDSSDKLVKYSEELSLAEKVAR 381

Query: 222 FIQNGDLDIIEDR--------------------------------------------AMI 237
           FIQNGDLDI++D                                              M 
Sbjct: 382 FIQNGDLDIVDDNFDATLSESGAGKGNGSVAATNAEESEINFHVEAFSEDTTASRGSLMA 441

Query: 238 LNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFD---SSEARRRENQLEIDHLKFMLH 294
            NGSA       S  TV   + ++   T       +    +E +  ENQ+EID LKFMLH
Sbjct: 442 SNGSASEFDDKVSTTTVGQLIRDNQPSTEALNGQIEKVSGAEIKVSENQVEIDRLKFMLH 501

Query: 295 QKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEI 354
           QKE+ELS+LKEQIE++KLALS  Q+KA  EI+ A+KLI ++D EL+AAEE L GLE V+I
Sbjct: 502 QKELELSQLKEQIERDKLALSASQSKAEAEISLAQKLILERDSELVAAEECLYGLEEVQI 561

Query: 355 QYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFI 414
            YSG+GEIVEVAGSFNGWHH+IKMDP PSS+ ++ + S+K R WSTVLWLYPG YEIKF+
Sbjct: 562 HYSGEGEIVEVAGSFNGWHHKIKMDPQPSSNHLDSVNSKKHRHWSTVLWLYPGVYEIKFV 621

Query: 415 VDGQWKVDPQRESVTKGGICNNILRV 440
           VDG WK+DP RES+TKG I NNILRV
Sbjct: 622 VDGHWKIDPHRESLTKGAISNNILRV 647

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186519755|ref|NP_195962.2| 5'-AMP-activated protein kinase-like protein [Arabidopsis thaliana] gi|332003218|gb|AED90601.1| 5'-AMP-activated protein kinase-like protein [Arabidopsis thaliana]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 140/267 (52%), Positives = 163/267 (61%), Gaps = 40/267 (14%)

Query: 208 LSLQSSDMEEKVANFIQNGDLDII-EDRAMI----------------------------- 237
           LS  +S +EEK   FIQNG LD +  D   I                             
Sbjct: 335 LSSCTSSIEEKTTRFIQNGYLDTVGADENDIPNESCPEESSETTKGGEYIGDSLGGPRIM 394

Query: 238 ---LNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSS-EARRRENQLEIDHLKFML 293
              LNGSAL  K+I     VN          G  G D D   E R+RENQ+EID L+FML
Sbjct: 395 STPLNGSALALKEIIHATEVNSSDRNSDQRDGSVGLDTDPHHETRKRENQVEIDRLRFML 454

Query: 294 HQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVE 353
            QKE+ELSRLKEQIEKEKL+LSVLQ +A TEI KA+ LIS+K+ EL  AEESLSGL+ V 
Sbjct: 455 DQKELELSRLKEQIEKEKLSLSVLQRQAETEIQKAQMLISEKEVELQEAEESLSGLQEVV 514

Query: 354 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 413
           I+Y GDG  VEV GSFNGW HR+ M+   S SI       K + WST+LWLYPGTYEIKF
Sbjct: 515 IEYCGDGNAVEVTGSFNGWQHRVGMELQASKSI------GKQKCWSTLLWLYPGTYEIKF 568

Query: 414 IVDGQWKVDPQRESVTKGGICNNILRV 440
           IVDGQW  DPQ++SVT+G I NNIL+V
Sbjct: 569 IVDGQWITDPQKDSVTRGHISNNILKV 595

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806299|ref|XP_002871033.1| hypothetical protein ARALYDRAFT_487117 [Arabidopsis lyrata subsp. lyrata] gi|297316870|gb|EFH47292.1| hypothetical protein ARALYDRAFT_487117 [Arabidopsis lyrata subsp. lyrata]

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/263 (50%), Positives = 160/263 (60%), Gaps = 43/263 (16%)

Query: 215 MEEKVANFIQNGDLDIIEDR------------------------------------AMIL 238
           +EEK   FIQNG LD ++D                                     +M  
Sbjct: 378 IEEKTTRFIQNGYLDTVDDDENGIPNESCPEDTKEGVETTKGGAYIGDSYGGQRSISMPP 437

Query: 239 NGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDS-SEARRRENQLEIDHLKFMLHQKE 297
           NGSAL  +++     +N          G    D DS  E  +RENQ+EID L+FMLHQKE
Sbjct: 438 NGSALALEEVTHAKELNSSDRNSDQRDGSADLDTDSHDETMKRENQVEIDRLRFMLHQKE 497

Query: 298 MELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYS 357
           +ELSRLKEQIEKEKL+LSVLQ +A TEI KA+ LIS+K+ EL  AEESLSGL+ V I+Y 
Sbjct: 498 LELSRLKEQIEKEKLSLSVLQRQAETEIQKAQMLISEKEVELRDAEESLSGLQEVVIEYC 557

Query: 358 GDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDG 417
           GDG +VEV GSFNGW HR+ M+   S SI       K + WST+LWLYPGTYEIKFIVDG
Sbjct: 558 GDGNVVEVTGSFNGWQHRVGMELQASKSI------GKQKCWSTLLWLYPGTYEIKFIVDG 611

Query: 418 QWKVDPQRESVTKGGICNNILRV 440
           QW  DPQ++SVT+G I NNIL V
Sbjct: 612 QWITDPQKDSVTRGHITNNILIV 634

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7378624|emb|CAB83300.1| putative protein [Arabidopsis thaliana]

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 99/213 (46%), Positives = 114/213 (53%), Gaps = 43/213 (20%)

Query: 208 LSLQSSDMEEKVANFIQNGDLDII-EDRAMI----------------------------- 237
           LS  +S +EEK   FIQNG LD +  D   I                             
Sbjct: 335 LSSCTSSIEEKTTRFIQNGYLDTVGADENDIPNESCPEESSETTKGGEYIGDSLGGPRIM 394

Query: 238 ---LNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSS-EARRRENQLEIDHLKFML 293
              LNGSAL  K+I     VN          G  G D D   E R+RENQ+EID L+FML
Sbjct: 395 STPLNGSALALKEIIHATEVNSSDRNSDQRDGSVGLDTDPHHETRKRENQVEIDRLRFML 454

Query: 294 HQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVE 353
            QKE+ELSRLKEQIEKEK         A TEI KA+ LIS+K+ EL  AEESLSGL+ V 
Sbjct: 455 DQKELELSRLKEQIEKEK---------AETEIQKAQMLISEKEVELQEAEESLSGLQEVV 505

Query: 354 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSI 386
           I+Y GDG  VEV GSFNGW HR+ M+   S SI
Sbjct: 506 IEYCGDGNAVEVTGSFNGWQHRVGMELQASKSI 538

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168029298|ref|XP_001767163.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681659|gb|EDQ68084.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 103/167 (61%), Gaps = 5/167 (2%)

Query: 277 ARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKD 336
           A R +++ E+  L  +LH +EME  ++  ++E+ K  L++++ K   E+ +A+ +  +KD
Sbjct: 382 AGRTDSEAEVARLLALLHAREMENLKVLRELEETKAMLALVRAKHSAEMAQAKLVAVEKD 441

Query: 337 EELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPS-SSIIEPIR--SR 393
             L  AE++L  L++ ++ + G+G  VE+ GSFNGW H I++  LP  SS   P+R  + 
Sbjct: 442 LRLQVAEQALQSLKLTQVDWWGEGSRVELGGSFNGWEHHIQL--LPDLSSKSSPVRPGTP 499

Query: 394 KSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 440
              LW   LWLYPG YEIKFIVDG+W +D +RE V      NN+L V
Sbjct: 500 SPLLWRIELWLYPGVYEIKFIVDGKWVLDNRREIVQGHMGQNNLLHV 546

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790768|ref|XP_002863269.1| hypothetical protein ARALYDRAFT_359028 [Arabidopsis lyrata subsp. lyrata] gi|297309103|gb|EFH39528.1| hypothetical protein ARALYDRAFT_359028 [Arabidopsis lyrata subsp. lyrata]

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 62/79 (78%)

Query: 272 FDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKL 331
           F+  +  +RENQ+EI  L+FML QKE ELSRLKEQIEKEKL+LSVLQ +A  EI KA+ L
Sbjct: 239 FEMIQTMKRENQVEITRLRFMLRQKEQELSRLKEQIEKEKLSLSVLQRQAENEILKAQML 298

Query: 332 ISDKDEELIAAEESLSGLE 350
           +S KD EL  AEESLSGL+
Sbjct: 299 VSVKDVELQEAEESLSGLQ 317

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
TAIR|locus:2142669	598	AT5G03420 "AT5G03420" [Arabido	0.446	0.329	0.593	4.4e-78
TAIR|locus:2167067	273	AT5G39790 "AT5G39790" [Arabido	0.342	0.553	0.295	1.4e-08
UNIPROTKB|P80387	122	PRKAB1 "5'-AMP-activated prote	0.233	0.844	0.272	0.00035

TAIR|locus:2142669 AT5G03420 "AT5G03420" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 4.4e-78, Sum P(3) = 4.4e-78
 Identities = 121/204 (59%), Positives = 140/204 (68%)

Query:   238 LNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSS-EARRRENQLEIDHLKFMLHQK 296
             LNGSAL  K+I     VN          G  G D D   E R+RENQ+EID L+FML QK
Sbjct:   398 LNGSALALKEIIHATEVNSSDRNSDQRDGSVGLDTDPHHETRKRENQVEIDRLRFMLDQK 457

Query:   297 EMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQY 356
             E+ELSRLKEQIEKEKL+LSVLQ +A TEI KA+ LIS+K+ EL  AEESLSGL+ V I+Y
Sbjct:   458 ELELSRLKEQIEKEKLSLSVLQRQAETEIQKAQMLISEKEVELQEAEESLSGLQEVVIEY 517

Query:   357 SGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKFIVD 416
              GDG  VEV GSFNGW HR+ M+                  WST+LWLYPGTYEIKFIVD
Sbjct:   518 CGDGNAVEVTGSFNGWQHRVGMELQASKSIGKQK------CWSTLLWLYPGTYEIKFIVD 571

Query:   417 GQWKVDPQRESVTKGGICNNILRV 440
             GQW  DPQ++SVT+G I NNIL+V
Sbjct:   572 GQWITDPQKDSVTRGHISNNILKV 595

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2167067 AT5G39790 "AT5G39790" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 50/169 (29%), Positives = 84/169 (49%)

Query:   278 RRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQ-TKAVTEINKAEKLISDKD 336
             +R+E+  EI ++K  L   E+E+  L +  E E   L + Q ++ ++       L+S  D
Sbjct:   116 KRQEH--EITNIKTELALMELEVQALVKLAE-EIANLGIPQGSRKISGKYIQSHLLSRLD 172

Query:   337 EELIAAEESLSGLEV-----VEIQYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXX 391
                   +E + G+E      V + + G  E V+V GSF+GW  R  +             
Sbjct:   173 AVQKKMKEQIKGVEAAQSKEVHVFWIGMAESVQVMGSFDGWSQREDLSPEYSALFTK--- 229

Query:   392 XXXXXLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 440
                   +ST L+L PG YE+KF+VDG+W++ P+  +  +G + NN+L V
Sbjct:   230 ------FSTTLFLRPGRYEMKFLVDGEWQISPEFPTSGEGLMENNVLVV 272

GO:0009507 "chloroplast" evidence=IDA

GO:0030247 "polysaccharide binding" evidence=IDA

UNIPROTKB|P80387 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Sus scrofa (taxid:9823)]

 Score = 96 (38.9 bits), Expect = 0.00035, P = 0.00035
 Identities = 34/125 (27%), Positives = 57/125 (45%)

Query:   324 EINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRI 376
             ++  +E++ + + EE +A +  L   +    Q       ++G G+ V ++GSFN W    
Sbjct:    10 DLYHSEEIKAPEKEEFLAWQHDLEVNDKASAQARPTVFRWTGGGKEVYLSGSFNNWS--- 66

Query:   377 KMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKG-GICN 435
             K+                   +  +L L  G ++ KF+VDGQW  DP    VT   G  N
Sbjct:    67 KLPLTRSHNN-----------FVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVN 115

Query:   436 NILRV 440
             NI++V
Sbjct:   116 NIIQV 120


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      441       367   0.00084  117 3  11 23  0.44    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  241 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  36.13u 0.19s 36.32t   Elapsed:  00:00:02
  Total cpu time:  36.13u 0.19s 36.32t   Elapsed:  00:00:02
  Start:  Sat May 11 02:40:52 2013   End:  Sat May 11 02:40:54 2013

GO:0005634 "nucleus" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00280219 hypothetical protein (626 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	441
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	2e-23
cd07184	86	cd07184, E_set_Isoamylase_like_N, N-terminal Early	1e-04
cd02688	82	cd02688, E_set, Early set domain associated with t	9e-04

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score = 93.0 bits (232), Expect = 2e-23
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 14/91 (15%)

Query: 352 VEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYE 410
           V  ++ G  G+ V V GSF+ W   I ++                  +S  + L PG YE
Sbjct: 2   VTFRWPGPGGKEVYVTGSFDNWQQPIPLEKSGDGE------------FSATVELPPGRYE 49

Query: 411 IKFIVDGQWKVDPQRESVT-KGGICNNILRV 440
            KFIVDG+W  DP   +VT + G  NN+L V
Sbjct: 50  YKFIVDGEWVHDPDLPTVTDEFGNLNNVLEV 80

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 13/64 (20%)

Query: 363 VEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ-WK 420
           V + G FN W      DP        P++  K+  +S  L L  G  Y+ ++++DG+ W 
Sbjct: 16  VSLVGDFNDW------DPQA-----TPMKKLKNGTFSATLDLPAGREYQFRYLIDGERWV 64

Query: 421 VDPQ 424
            DP+
Sbjct: 65  NDPE 68

E or "early" set domains are associated with the catalytic domain of isoamylase-like proteins at the N-terminal end. Isoamylase is one of the starch-debranching enzymes that catalyze the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminal domain of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and the beta subunit of AMP-activated protein kinase. Length = 86

>gnl|CDD|199878 cd02688, E_set, Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 356 YSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 415
           ++   + V + GSFNGW     +          P+      +WS  + L  GTYE K+++
Sbjct: 7   FAPGAKSVYLIGSFNGWWQAQAL----------PMTKNGGGVWSATIPLPLGTYEYKYVI 56

Query: 416 DGQWKVDP 423
           DG   V P
Sbjct: 57  DGGKNVLP 64

The E or "early" set domains of sugar utilizing enzymes are associated with different types of catalytic domains at either the N-terminal or C-terminal end. These domains may be related to the immunoglobulin and/or fibronectin type III superfamilies. Members of this family include alpha amylase, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. A subset of these members were recently identified as members of the CBM48 (Carbohydrate Binding Module 48) family. Members of the CBM48 family include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, isoamylase, and the beta subunit of AMP-activated protein kinase. Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	441
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.9
cd02861	82	E_set_proteins_like E or "early" set-like proteins	99.75
KOG1616	289	consensus Protein involved in Snf1 protein kinase	99.56
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	99.23
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	98.86
cd02854	99	Glycogen_branching_enzyme_like_N_term Glycogen bra	98.38
PF02922	85	CBM_48: Carbohydrate-binding module 48 (Isoamylase	98.35
cd05808	95	CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2	97.73
cd02860	100	Pullulanase_N_term Pullulanase domain N-terminus.	97.7
cd02855	106	Glycogen_branching_enzyme_N_term Glycogen branchin	97.44
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	97.42
PF00686	96	CBM_20: Starch binding domain; InterPro: IPR002044	97.36
cd02856	103	Glycogen_debranching_enzyme_N_term Glycogen_debran	97.33
cd05814	120	CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-	97.17
cd05818	92	CBM20_water_dikinase Phosphoglucan water dikinase	97.17
PRK12313	633	glycogen branching enzyme; Provisional	97.17
PLN02447	758	1,4-alpha-glucan-branching enzyme	97.15
PRK12568	730	glycogen branching enzyme; Provisional	97.11
cd05820	103	CBM20_novamyl Novamyl (also known as acarviose tra	97.02
cd05811	106	CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g	97.02
cd02852	119	Isoamylase_N_term Isoamylase N-terminus domain. Is	96.96
cd05809	99	CBM20_beta_amylase Beta-amylase, C-terminal CBM20	96.95
PRK14705	1224	glycogen branching enzyme; Provisional	96.86
PRK14706	639	glycogen branching enzyme; Provisional	96.79
cd02853	85	MTHase_N_term Maltooligosyl trehalose synthase (MT	96.71
cd05817	100	CBM20_DSP Dual-specificity phosphatase (DSP), N-te	96.63
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	96.61
cd05467	96	CBM20 The family 20 carbohydrate-binding module (C	96.57
cd05813	95	CBM20_genethonin_1 Genethonin-1, C-terminal CBM20	96.57
PRK05402	726	glycogen branching enzyme; Provisional	96.56
cd05816	99	CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP	96.47
cd05807	101	CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat	96.44
PLN02316	1036	synthase/transferase	95.91
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	95.82
cd05810	97	CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol	95.8
PRK05402	726	glycogen branching enzyme; Provisional	95.77
cd05815	101	CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP	94.89
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	94.12
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	93.96
cd05806	112	CBM20_laforin Laforin protein tyrosine phosphatase	93.76
PLN02316	1036	synthase/transferase	93.6
PRK10439	411	enterobactin/ferric enterobactin esterase; Provisi	92.11
PLN02950	909	4-alpha-glucanotransferase	91.89
PF11806	122	DUF3327: Domain of unknown function (DUF3327); Int	91.84
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	91.4
PLN02950	909	4-alpha-glucanotransferase	89.04
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	88.1
PRK03705	658	glycogen debranching enzyme; Provisional	87.08
PLN02960	897	alpha-amylase	85.58
cd02857	116	CD_pullulan_degrading_enzymes_N_term CD and pullul	84.13
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	82.93

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.90  E-value=1.3e-23  Score=169.40  Aligned_cols=78  Identities=35%  Similarity=0.699  Sum_probs=71.6

Q ss_pred             ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCeeecCCCCCcc
Q 013544          349 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV  428 (441)
Q Consensus       349 L~~VTFtW~~~AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDGeW~~DPd~PtV  428 (441)
                      .++|+|+|+++|++|+|+|+|++|++.++|.+.            ..+ |++++.||||.|+|||+|||.|++||+.|++
T Consensus         1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~   67 (79)
T cd02859           1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE   67 (79)
T ss_pred             CeEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc
Confidence            368999999999999999999999988999975            334 9999999999999999999999999999999


Q ss_pred             cC-CCccceEEE
Q 013544          429 TK-GGICNNILR  439 (441)
Q Consensus       429 tD-~Gn~NNVL~  439 (441)
                      .+ .|+.||+|.
T Consensus        68 ~d~~G~~NN~i~   79 (79)
T cd02859          68 TDDEGNVNNVID   79 (79)
T ss_pred             CCCCCcEeeeEC
Confidence            87 799999984

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=99.75  E-value=3.7e-18  Score=137.31  Aligned_cols=77  Identities=39%  Similarity=0.689  Sum_probs=68.1

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCeee-cCCCCCc
Q 013544          350 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRES  427 (441)
Q Consensus       350 ~~VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDGeW~-~DPd~Pt  427 (441)
                      .+|+|+|.++ ++.|+|+|+|++|+ .++|.++            .+|.|++++.|+||.|+|||+|||.|. +||.++.
T Consensus         2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~------------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~   68 (82)
T cd02861           2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE------------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAA   68 (82)
T ss_pred             ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC------------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCc
Confidence            4799999998 69999999999998 5789874            569999999999999999999999998 9999997


Q ss_pred             cc-C-CCccceEEE
Q 013544          428 VT-K-GGICNNILR  439 (441)
Q Consensus       428 Vt-D-~Gn~NNVL~  439 (441)
                      .. + .|+.|+||.
T Consensus        69 ~~~~~~g~~n~v~~   82 (82)
T cd02861          69 YVDDGFGGKNAVFV   82 (82)
T ss_pred             eecCCCCccceEcC
Confidence            65 4 488899873

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=99.56  E-value=4.8e-15  Score=145.92  Aligned_cols=83  Identities=39%  Similarity=0.567  Sum_probs=75.1

Q ss_pred             ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCeeecCCCCCcc
Q 013544          349 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV  428 (441)
Q Consensus       349 L~~VTFtW~~~AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDGeW~~DPd~PtV  428 (441)
                      -.+|+|+|..+++.|+|.|+|++|...++|.+.-          +..|.|.+++.|++|.|+|||+|||+|.+|++.|++
T Consensus        79 ~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~----------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta  148 (289)
T KOG1616|consen   79 GRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG----------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTA  148 (289)
T ss_pred             CCceEEEecCCCceEEEecccccccccccceecC----------CCcccceeeEecCCceEEEEEecCCceecCCCCccc
Confidence            4689999999999999999999999989988641          244559999999999999999999999999999999


Q ss_pred             cC-CCccceEEEeC
Q 013544          429 TK-GGICNNILRVI  441 (441)
Q Consensus       429 tD-~Gn~NNVL~V~  441 (441)
                      .+ .|+.||+|.|.
T Consensus       149 ~d~~Gn~~N~i~v~  162 (289)
T KOG1616|consen  149 EDSLGNLNNILEVQ  162 (289)
T ss_pred             ccccCCcccceEec
Confidence            98 79999999984

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=99.23  E-value=4.8e-11  Score=97.43  Aligned_cols=77  Identities=25%  Similarity=0.368  Sum_probs=65.0

Q ss_pred             ceEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EcCCeeEEEEEEECCeeecCCCCC
Q 013544          349 LEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQWKVDPQRE  426 (441)
Q Consensus       349 L~~VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL-~LpPGrYEYKFIVDGeW~~DPd~P  426 (441)
                      ...|+|+..++ +++|.|.|+|++|.. ++|.++            +.|.|++++ .|.+|.|.|+|+|||.|+.||.++
T Consensus         5 ~~~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~------------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~   71 (85)
T cd02858           5 DRTVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD------------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNP   71 (85)
T ss_pred             CCcEEEEEECCCCCEEEEEeecCCCcc-EeCeEC------------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCC
Confidence            45799998887 899999999998864 789875            689999998 488999999999999999999999


Q ss_pred             ccc-CCCccceEE
Q 013544          427 SVT-KGGICNNIL  438 (441)
Q Consensus       427 tVt-D~Gn~NNVL  438 (441)
                      ... +.+..-|++
T Consensus        72 ~~~~~~~~~~~~~   84 (85)
T cd02858          72 TTKPGRQVDTSGV   84 (85)
T ss_pred             ceeecccccceee
Confidence            877 455555543

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=98.86  E-value=1.1e-08  Score=78.57  Aligned_cols=70  Identities=30%  Similarity=0.478  Sum_probs=60.6

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCC-eeEEEEEEECCeeecCCCCCc
Q 013544          350 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRES  427 (441)
Q Consensus       350 ~~VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpP-GrYEYKFIVDGeW~~DPd~Pt  427 (441)
                      ..|+|++.++ ++.|.|.+.|++|...++|.+.            ..|.|.+.+.+.. |.|.|+|+|||.|.+++.++.
T Consensus         4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~------------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~   71 (83)
T cd02688           4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV------------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPK   71 (83)
T ss_pred             ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC------------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChh
Confidence            4789999887 8999999999997677899864            5699999999887 999999999999999998866


Q ss_pred             ccCC
Q 013544          428 VTKG  431 (441)
Q Consensus       428 VtD~  431 (441)
                      ..+.
T Consensus        72 ~~~~   75 (83)
T cd02688          72 ADEG   75 (83)
T ss_pred             hhcC
Confidence            6653

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain

Probab=98.38  E-value=1.2e-06  Score=74.28  Aligned_cols=68  Identities=19%  Similarity=0.379  Sum_probs=52.3

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEc--------CCe-eEEEEEEE-CC
Q 013544          350 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL--------YPG-TYEIKFIV-DG  417 (441)
Q Consensus       350 ~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~L--------pPG-rYEYKFIV-DG  417 (441)
                      ..++|+..++ |+.|+|+|+||+|+.. ++|.+.            ..|+|++++..        +.| .|.|.+.. ||
T Consensus         5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~------------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G   72 (99)
T cd02854           5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD------------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG   72 (99)
T ss_pred             CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC------------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence            4688998887 9999999999999864 679874            58999999864        456 56666666 78


Q ss_pred             ee--ecCCCCCccc
Q 013544          418 QW--KVDPQRESVT  429 (441)
Q Consensus       418 eW--~~DPd~PtVt  429 (441)
                      +|  +.||-...+.
T Consensus        73 ~~~~~~DPyA~~~~   86 (99)
T cd02854          73 EWIDRIPAWIKYVT   86 (99)
T ss_pred             CEEEEcCcceeEEE
Confidence            76  4677665544

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi

>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3

Probab=98.35  E-value=4.9e-07  Score=71.84  Aligned_cols=59  Identities=27%  Similarity=0.435  Sum_probs=47.4

Q ss_pred             eEEEEEEecC-CceEEEEeeeCC-Cccc-cccCCCCCCCccccccccCCCcEEEEEE--cCCeeEEEEEEECCee
Q 013544          350 EVVEIQYSGD-GEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQW  419 (441)
Q Consensus       350 ~~VTFtW~~~-AksVeVaGSFNn-W~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~--LpPGrYEYKFIVDGeW  419 (441)
                      ..|+|+..++ |+.|.|.+.|++ |... ++|.+.           ...|+|++++.  +++|.++|+|.|||..
T Consensus        11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-----------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~   74 (85)
T PF02922_consen   11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-----------DDDGVWEVTVPGDLPPGGYYYKYRIDGDD   74 (85)
T ss_dssp             TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-----------CTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred             CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-----------CCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence            5899998886 999999999999 8654 789831           26899999998  8989888899888653

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....

>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.73  E-value=0.00014  Score=59.34  Aligned_cols=63  Identities=27%  Similarity=0.556  Sum_probs=47.4

Q ss_pred             EEEEEEec---CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---CC-
Q 013544          351 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG-  417 (441)
Q Consensus       351 ~VTFtW~~---~AksVeVaGS---FNnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---DG-  417 (441)
                      +|+|....   .|..|+|+|+   +.+|++.  ++|...            ..+.|.+++.||+| .++|||++   +| 
T Consensus         2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~------------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~   69 (95)
T cd05808           2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA------------TYPVWSGTVDLPAGTAIEYKYIKKDGSGT   69 (95)
T ss_pred             eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC------------CCCCEEEEEEeCCCCeEEEEEEEECCCCc
Confidence            46666654   4899999996   6899864  678653            56889999999987 79999996   24 


Q ss_pred             -eeecCCCC
Q 013544          418 -QWKVDPQR  425 (441)
Q Consensus       418 -eW~~DPd~  425 (441)
                       .|...++.
T Consensus        70 ~~WE~~~nr   78 (95)
T cd05808          70 VTWESGPNR   78 (95)
T ss_pred             EEEecCCCE
Confidence             47666643

This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo

>cd02860 Pullulanase_N_term Pullulanase domain N-terminus

Probab=97.70  E-value=0.00012  Score=60.69  Aligned_cols=68  Identities=18%  Similarity=0.239  Sum_probs=53.4

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCe-----
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----  418 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~-----~~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDGe-----  418 (441)
                      .++|+..++ |++|.|.. |++|.     ..++|.+.            ..|+|++.+. +.+|.+ |+|.|+|.     
T Consensus         9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~   74 (100)
T cd02860           9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRG------------ENGVWSVTLDGDLEGYY-YLYEVKVYKGETN   74 (100)
T ss_pred             CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecC------------CCCEEEEEeCCccCCcE-EEEEEEEeceEEE
Confidence            578987777 99999987 88886     45788763            6899999986 666765 89999876     


Q ss_pred             eecCCCCCcccCCC
Q 013544          419 WKVDPQRESVTKGG  432 (441)
Q Consensus       419 W~~DPd~PtVtD~G  432 (441)
                      ...||-...+...|
T Consensus        75 ~~~DPyA~~~~~~~   88 (100)
T cd02860          75 EVVDPYAKALSANG   88 (100)
T ss_pred             EEcCcccEeEeeCC
Confidence            78899887776544

Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain

Probab=97.44  E-value=0.00078  Score=55.18  Aligned_cols=77  Identities=26%  Similarity=0.357  Sum_probs=50.6

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-cCCee-EEEEEEEC-Cee--ecCC
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGT-YEIKFIVD-GQW--KVDP  423 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~~-~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGr-YEYKFIVD-GeW--~~DP  423 (441)
                      .++|+...+ |+.|.|.|+|++|.. .++|.+.           ...|.|.+.+. +++|. |.|++..+ |.|  ..||
T Consensus        22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-----------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DP   90 (106)
T cd02855          22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-----------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADP   90 (106)
T ss_pred             CEEEEEECCCCCEEEEEEECCCCCCcceecEEC-----------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCC
Confidence            478887766 999999999999964 3678764           24899999886 66674 44444443 333  4466


Q ss_pred             CCCcccCCCccceEE
Q 013544          424 QRESVTKGGICNNIL  438 (441)
Q Consensus       424 d~PtVtD~Gn~NNVL  438 (441)
                      -..-+......++|+
T Consensus        91 Ya~~~~~~~~~~~~~  105 (106)
T cd02855          91 YAFYSELRPGTASIV  105 (106)
T ss_pred             CceeeEeCCCCeEEe
Confidence            555444433355554

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=97.42  E-value=0.00024  Score=77.67  Aligned_cols=67  Identities=25%  Similarity=0.459  Sum_probs=53.3

Q ss_pred             CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCe-----e
Q 013544          348 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----W  419 (441)
Q Consensus       348 gL~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDGe-----W  419 (441)
                      |...|+|...++ ++.|.|.|+||+|+.. .+|...           ++.|.|.++++ +++| +.|||.|++.     +
T Consensus        34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-----------~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~  101 (628)
T COG0296          34 GVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-----------KESGIWELFVPGAPPG-TRYKYELIDPSGQLRL  101 (628)
T ss_pred             CCCceEEEEECCCCCeEEEEeecCCccceecccccC-----------CCCceEEEeccCCCCC-CeEEEEEeCCCCceee
Confidence            566899998887 9999999999999873 344432           36799999998 9999 9999999754     3


Q ss_pred             ecCCCCC
Q 013544          420 KVDPQRE  426 (441)
Q Consensus       420 ~~DPd~P  426 (441)
                      +.||-.-
T Consensus       102 ~~DP~a~  108 (628)
T COG0296         102 KADPYAR  108 (628)
T ss_pred             ccCchhh
Confidence            6776543

>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3

Probab=97.36  E-value=0.00043  Score=57.22  Aligned_cols=58  Identities=22%  Similarity=0.427  Sum_probs=45.3

Q ss_pred             eEEEEEEec---CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE
Q 013544          350 EVVEIQYSG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  415 (441)
Q Consensus       350 ~~VTFtW~~---~AksVeVaGSFN---nW~~--~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV  415 (441)
                      +.|+|....   .+..|+|+|+..   +|++  .++|....        ++.....|++++.||.| .++|||+|
T Consensus         2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~i   68 (96)
T PF00686_consen    2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNE--------GTENYPIWSATVDLPAGTPFEYKYVI   68 (96)
T ss_dssp             EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBES--------SSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhcccccccc--------CCCCCCeEEEEEECcCCCEEEEEEEE
Confidence            467888754   489999999996   8997  47787531        01246899999999998 79999999

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....

>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain

Probab=97.33  E-value=0.00074  Score=56.59  Aligned_cols=53  Identities=17%  Similarity=0.278  Sum_probs=42.1

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEE-EcCCeeEEEEEEECC
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDG  417 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~--~~IpM~kd~ss~~~~~~~tkesG~FsttL-~LpPGrYEYKFIVDG  417 (441)
                      .++|+..++ |+.|.|.. |++|.  ..++|.++            ..|+|.+.+ .+.+|. .|+|.|||
T Consensus        10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~GvW~~~v~~~~~g~-~Y~y~i~g   66 (103)
T cd02856          10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE------------YGGVWHGFLPGIKAGQ-RYGFRVHG   66 (103)
T ss_pred             CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc------------cCCEEEEEECCCCCCC-EEEEEECC
Confidence            478987777 99999998 66664  34788764            579999998 467776 79999999

Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.17  E-value=0.0026  Score=55.13  Aligned_cols=55  Identities=24%  Similarity=0.558  Sum_probs=43.3

Q ss_pred             EEEEEEec----CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE
Q 013544          351 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  415 (441)
Q Consensus       351 ~VTFtW~~----~AksVeVaGS---FNnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV  415 (441)
                      .|+|....    .++.|+|+|+   +.+|++.  ++|....          ...+.|.+.+.||++ .++|||+|
T Consensus         2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~----------~~~~~W~~~v~lp~~~~veYkY~~   66 (120)
T cd05814           2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED----------DDCNLWKASIELPRGVDFQYRYFV   66 (120)
T ss_pred             eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC----------CcCCccEEEEEECCCCeEEEEEEE
Confidence            46666655    3899999999   8999854  5787531          145789999999998 89999999

Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.17  E-value=0.0022  Score=53.35  Aligned_cols=65  Identities=28%  Similarity=0.477  Sum_probs=49.4

Q ss_pred             eEEEEEEec---CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---CC--
Q 013544          350 EVVEIQYSG---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG--  417 (441)
Q Consensus       350 ~~VTFtW~~---~AksVeVaGSF---NnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---DG--  417 (441)
                      ..|+|...+   .|..|+|+|+-   .+|++..+|..             ..+.|.+.+.+|+| .++|||++   ||  
T Consensus         2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~-------------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v   68 (92)
T cd05818           2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW-------------TENGWVCDLELDGGELVEYKFVIVKRDGSV   68 (92)
T ss_pred             EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc-------------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCE
Confidence            356666655   38999999988   59997777764             24569999999988 79999999   44  


Q ss_pred             eeecCCCCCc
Q 013544          418 QWKVDPQRES  427 (441)
Q Consensus       418 eW~~DPd~Pt  427 (441)
                      .|...++.-.
T Consensus        69 ~WE~g~Nr~~   78 (92)
T cd05818          69 IWEGGNNRVL   78 (92)
T ss_pred             EEEeCCCEEE
Confidence            4877666543

This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>PRK12313 glycogen branching enzyme; Provisional

Probab=97.17  E-value=0.0012  Score=71.36  Aligned_cols=66  Identities=23%  Similarity=0.339  Sum_probs=49.6

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCe-eEEEEEEE-CCee--ecC
Q 013544          350 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KVD  422 (441)
Q Consensus       350 ~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPG-rYEYKFIV-DGeW--~~D  422 (441)
                      ..|+|+..++ |+.|+|.|+|++|... ++|.+.            ..|+|.+++. +.+| .|.|++.+ ||.|  ..|
T Consensus        38 ~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~------------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D  105 (633)
T PRK12313         38 KGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR------------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKID  105 (633)
T ss_pred             ccEEEEEECCCCCEEEEEEecCCCCccccccccc------------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCC
Confidence            4789998887 9999999999999864 678763            5799999997 5555 66666644 5765  456


Q ss_pred             CCCCc
Q 013544          423 PQRES  427 (441)
Q Consensus       423 Pd~Pt  427 (441)
                      |-...
T Consensus       106 Pya~~  110 (633)
T PRK12313        106 PFAFY  110 (633)
T ss_pred             CceEE
Confidence            55443

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=97.15  E-value=0.0023  Score=71.52  Aligned_cols=62  Identities=16%  Similarity=0.302  Sum_probs=46.7

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-------cCCeeEEEEEEEC---Ce
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ  418 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~-------LpPGrYEYKFIVD---Ge  418 (441)
                      .++|+..+| |+.|.|+|+||+|... .+|.+.            ..|+|++.+.       ++.|. .|||.|.   |.
T Consensus       115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~------------~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~  181 (758)
T PLN02447        115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN------------EFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGR  181 (758)
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCCCccCceeC------------CCCEEEEEECCccccccCCCCC-EEEEEEEeCCCc
Confidence            688887777 8999999999999864 679874            6899999986       44553 6777774   54


Q ss_pred             --eecCCCC
Q 013544          419 --WKVDPQR  425 (441)
Q Consensus       419 --W~~DPd~  425 (441)
                        ++.||-.
T Consensus       182 ~~~r~dpya  190 (758)
T PLN02447        182 WVDRIPAWI  190 (758)
T ss_pred             EEeecCchH
Confidence              3556643

>PRK12568 glycogen branching enzyme; Provisional

Probab=97.11  E-value=0.0016  Score=72.36  Aligned_cols=69  Identities=26%  Similarity=0.445  Sum_probs=52.7

Q ss_pred             CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEE---CCeee-
Q 013544          348 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQWK-  420 (441)
Q Consensus       348 gL~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIV---DGeW~-  420 (441)
                      |...|+|+..++ |+.|.|+|+||+|... ++|.+.            ..|+|++.+. +.+|. .|||.|   ||.+. 
T Consensus       136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~------------~~GVWelfipg~~~G~-~YKYeI~~~~G~~~~  202 (730)
T PRK12568        136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR------------IGGFWELFLPRVEAGA-RYKYAITAADGRVLL  202 (730)
T ss_pred             CCCcEEEEEECCCCCEEEEEEecCCCCccceecccC------------CCCEEEEEECCCCCCC-EEEEEEEcCCCeEee
Confidence            345789998887 9999999999999864 678763            6899999985 77883 577777   78764 


Q ss_pred             -cCCCCCccc
Q 013544          421 -VDPQRESVT  429 (441)
Q Consensus       421 -~DPd~PtVt  429 (441)
                       .||-.....
T Consensus       203 k~DPYA~~~e  212 (730)
T PRK12568        203 KADPVARQTE  212 (730)
T ss_pred             cCCCcceEee
Confidence             677655433

>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.02  E-value=0.0055  Score=51.99  Aligned_cols=69  Identities=23%  Similarity=0.352  Sum_probs=51.5

Q ss_pred             eEEEEEEec-----CCceEEEEeee---CCCcccc-----ccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE
Q 013544          350 EVVEIQYSG-----DGEIVEVAGSF---NGWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  415 (441)
Q Consensus       350 ~~VTFtW~~-----~AksVeVaGSF---NnW~~~I-----pM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV  415 (441)
                      ++|+|....     .|..|+|+|+-   .+|+...     +|..            .....|.+.+.||.| ..+|||++
T Consensus         3 ~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~------------~~~~~W~~~~~lp~~~~veyK~v~   70 (103)
T cd05820           3 IPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC------------PNWPDWFVVASVPAGTYIEFKFLK   70 (103)
T ss_pred             ccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc------------CCCCCEEEEEEcCCCCcEEEEEEE
Confidence            678898864     37899999987   4998632     4542            245789999999999 79999999


Q ss_pred             ---CCe--eecCCCCCcccC
Q 013544          416 ---DGQ--WKVDPQRESVTK  430 (441)
Q Consensus       416 ---DGe--W~~DPd~PtVtD  430 (441)
                         ||.  |...++.-....
T Consensus        71 ~~~~g~v~WE~g~Nr~~~~p   90 (103)
T cd05820          71 APADGTGTWEGGSNHAYTTP   90 (103)
T ss_pred             ECCCCCEEEEeCCCEeEECC
Confidence               553  877776554444

Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco

>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.02  E-value=0.0064  Score=51.01  Aligned_cols=71  Identities=30%  Similarity=0.590  Sum_probs=50.1

Q ss_pred             ceEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---C
Q 013544          349 LEVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D  416 (441)
Q Consensus       349 L~~VTFtW~~---~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---D  416 (441)
                      .+.|+|....   .|..|+|+|+-   .+|++.  ++|....        .+...+.|.+.+.||+| .++|||+|   |
T Consensus         6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~--------~t~~~~~W~~~v~lp~~~~veYKy~~~~~~   77 (106)
T cd05811           6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQ--------YTSSNPLWSVTIPLPAGTSFEYKFIRKESD   77 (106)
T ss_pred             EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCccccccc--------CccCCCcEEEEEEeCCCCcEEEEEEEEcCC
Confidence            3567887654   38999999987   489863  5675420        11245789999999988 59999996   2


Q ss_pred             C--eeecCCCCCc
Q 013544          417 G--QWKVDPQRES  427 (441)
Q Consensus       417 G--eW~~DPd~Pt  427 (441)
                      |  .|...++.-.
T Consensus        78 ~~~~WE~~~nr~~   90 (106)
T cd05811          78 GSVTWESDPNRSY   90 (106)
T ss_pred             CcEEEecCCCeEE
Confidence            3  3877765443

Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also

>cd02852 Isoamylase_N_term Isoamylase N-terminus domain

Probab=96.96  E-value=0.0026  Score=54.41  Aligned_cols=61  Identities=25%  Similarity=0.398  Sum_probs=45.1

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCc---c--ccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCeeec
Q 013544          350 EVVEIQYSGD-GEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQWKV  421 (441)
Q Consensus       350 ~~VTFtW~~~-AksVeVaGSFNnW~---~--~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDGeW~~  421 (441)
                      ..++|+..++ |+.|.|.. |++|.   +  .++|.++.         .+..|+|.+.+. +.+|. .|+|.|+|.|..
T Consensus         7 ~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~---------~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p   74 (119)
T cd02852           7 GGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSV---------NRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEP   74 (119)
T ss_pred             CCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcc---------cccCCEEEEEECCCCCCC-EEEEEECCCCCC
Confidence            3578987776 99999998 88886   2  35676531         124699999985 78886 699999986543

Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.95  E-value=0.0046  Score=51.91  Aligned_cols=70  Identities=23%  Similarity=0.348  Sum_probs=48.8

Q ss_pred             ceEEEEEEec----CCceEEEEe---eeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---C
Q 013544          349 LEVVEIQYSG----DGEIVEVAG---SFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D  416 (441)
Q Consensus       349 L~~VTFtW~~----~AksVeVaG---SFNnW~~~I-pM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---D  416 (441)
                      .++|+|....    .+..|+|+|   ++.+|+... +|..-.         ....+.|.+.+.||+| .++|||++   |
T Consensus         2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~---------~~~~~~W~~~~~lp~~~~veyKyv~~~~~   72 (99)
T cd05809           2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYY---------NSHSNDWRGTVHLPAGRNIEFKAIKKSKD   72 (99)
T ss_pred             ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhcccc---------CCCCCCEEEEEEecCCCcEEEEEEEEcCC
Confidence            3678888743    379999999   567998641 232210         0245789999999999 79999999   4


Q ss_pred             C---eeecCCCCCc
Q 013544          417 G---QWKVDPQRES  427 (441)
Q Consensus       417 G---eW~~DPd~Pt  427 (441)
                      |   .|...++.-.
T Consensus        73 ~~~~~WE~g~nr~~   86 (99)
T cd05809          73 GTNKSWQGGQQSWY   86 (99)
T ss_pred             CCeeEEecCCCeeE
Confidence            4   2876665443

Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1

>PRK14705 glycogen branching enzyme; Provisional

Probab=96.86  E-value=0.0035  Score=73.18  Aligned_cols=66  Identities=33%  Similarity=0.602  Sum_probs=50.2

Q ss_pred             CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEEC---Cee--
Q 013544          348 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQW--  419 (441)
Q Consensus       348 gL~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVD---GeW--  419 (441)
                      |...|.|...++ ++.|.|+|+||+|..+ .+|.+.           ...|+|++.+. +.+|. .|||.|.   |.|  
T Consensus       636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-----------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~  703 (1224)
T PRK14705        636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-----------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVE  703 (1224)
T ss_pred             CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC-----------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEe
Confidence            445788998777 9999999999999864 578763           25799999985 88895 5888884   555  


Q ss_pred             ecCCCC
Q 013544          420 KVDPQR  425 (441)
Q Consensus       420 ~~DPd~  425 (441)
                      +.||-.
T Consensus       704 k~DPyA  709 (1224)
T PRK14705        704 KADPLA  709 (1224)
T ss_pred             cCCccc
Confidence            456644

>PRK14706 glycogen branching enzyme; Provisional

Probab=96.79  E-value=0.0035  Score=68.59  Aligned_cols=67  Identities=31%  Similarity=0.451  Sum_probs=50.5

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECC---ee--ec
Q 013544          350 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---QW--KV  421 (441)
Q Consensus       350 ~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDG---eW--~~  421 (441)
                      ..|+|+..++ |+.|.|.|+||+|... ++|.+.            ..|+|.+.+. +.+| ..|||.|+|   .+  +.
T Consensus        38 ~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~------------~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~  104 (639)
T PRK14706         38 EGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL------------DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKM  104 (639)
T ss_pred             ccEEEEEECCCCCEEEEEEecCCccccccccccc------------CCCEEEEEECCCCCC-CEEEEEEECCCCCEEecc
Confidence            4689988777 9999999999999864 688864            5699999986 4566 468888865   43  66


Q ss_pred             CCCCCccc
Q 013544          422 DPQRESVT  429 (441)
Q Consensus       422 DPd~PtVt  429 (441)
                      ||-...+.
T Consensus       105 DPYa~~~~  112 (639)
T PRK14706        105 DPYGSFFE  112 (639)
T ss_pred             CcceEEEe
Confidence            77655443

>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain

Probab=96.71  E-value=0.0086  Score=48.59  Aligned_cols=73  Identities=14%  Similarity=0.043  Sum_probs=51.6

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEEC-CeeecCCCCCc
Q 013544          350 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD-GQWKVDPQRES  427 (441)
Q Consensus       350 ~~VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVD-GeW~~DPd~Pt  427 (441)
                      ..++|...++ |+.|.|....  |. .++|.++            ..|.|++++.--+|. .|+|.|+ |..+.||....
T Consensus         8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~------------~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~   71 (85)
T cd02853           8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD------------GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF   71 (85)
T ss_pred             CCEEEEEeCCCCCEEEEEecC--CC-cccCccC------------CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence            4588998877 9999999643  53 5789864            689999998533776 4777776 56889998887


Q ss_pred             ccCCCccceEE
Q 013544          428 VTKGGICNNIL  438 (441)
Q Consensus       428 VtD~Gn~NNVL  438 (441)
                      ...+.+-++++
T Consensus        72 ~~~~~~~~s~v   82 (85)
T cd02853          72 QPEGVHGPSQV   82 (85)
T ss_pred             CCCCCCCCeEe
Confidence            55433334443

MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.63  E-value=0.0065  Score=51.08  Aligned_cols=45  Identities=24%  Similarity=0.428  Sum_probs=36.7

Q ss_pred             CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE
Q 013544          359 DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  415 (441)
Q Consensus       359 ~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV  415 (441)
                      .|..|+|+|+-   .+|++.  ++|...            ....|++++.||+| .++|||+|
T Consensus        12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~------------~~~~W~~~v~lp~~~~veYKY~i   62 (100)
T cd05817          12 FGEAVYISGNCNQLGNWNPSKAKRMQWN------------EGDLWTVDVGIPESVYIEYKYFV   62 (100)
T ss_pred             CCCEEEEEeCcHHHCCCCccccCcccCC------------CCCCEEEEEEECCCCcEEEEEEE
Confidence            38999999995   689854  567642            45689999999988 69999999

This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=96.61  E-value=0.0047  Score=66.08  Aligned_cols=70  Identities=14%  Similarity=0.119  Sum_probs=53.0

Q ss_pred             EEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECC-eeecCCCCCcc
Q 013544          352 VEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESV  428 (441)
Q Consensus       352 VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDG-eW~~DPd~PtV  428 (441)
                      |+|+..++ |++|.|.+.   + ..++|.+.            ..|+|++++. +.+| |.|+|.||| .-+.||-....
T Consensus         1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~------------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~   63 (542)
T TIGR02402         1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL------------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ   63 (542)
T ss_pred             CEEEEECCCCCEEEEEeC---C-CEEeCeEC------------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence            57887776 999999972   3 35789874            5799999996 7888 789999999 68889988875


Q ss_pred             cCCCccceEE
Q 013544          429 TKGGICNNIL  438 (441)
Q Consensus       429 tD~Gn~NNVL  438 (441)
                      ..+.+..++|
T Consensus        64 ~~~~~~~S~V   73 (542)
T TIGR02402        64 PDGVHGPSQV   73 (542)
T ss_pred             ccCCCCCeEE
Confidence            5432223444

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase)

Probab=96.57  E-value=0.0098  Score=48.28  Aligned_cols=46  Identities=26%  Similarity=0.535  Sum_probs=37.2

Q ss_pred             CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCC--e-eEEEEEEE
Q 013544          359 DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP--G-TYEIKFIV  415 (441)
Q Consensus       359 ~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpP--G-rYEYKFIV  415 (441)
                      .|..|+|+|+.   .+|++.  ++|...           ...+.|.+.+.+|+  | .++|||++
T Consensus        12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~-----------~~~~~W~~~v~~~~~~~~~~~yKy~~   65 (96)
T cd05467          12 FGQSVYVVGSHPELGNWDPAKALRLNTS-----------NSYPLWTGEIPLPAPEGQVIEYKYVI   65 (96)
T ss_pred             CCCEEEEEeCcHHhCCcChhcCccccCC-----------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence            48999999998   489853  678653           12689999999999  7 79999998

CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.57  E-value=0.0099  Score=49.17  Aligned_cols=53  Identities=28%  Similarity=0.511  Sum_probs=41.5

Q ss_pred             EEEEEEec----CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE
Q 013544          351 VVEIQYSG----DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  415 (441)
Q Consensus       351 ~VTFtW~~----~AksVeVaGSF---NnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV  415 (441)
                      +|+|...+    +++.|+|+|+-   .+|+..++|...            ..+.|.+.+.||+| .++|||++
T Consensus         2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~------------~~~~W~~~v~lp~~~~ieYky~~   62 (95)
T cd05813           2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV------------KDGFWSASVSLPVDTHVEWKFVL   62 (95)
T ss_pred             eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC------------CCCCEEEEEEecCCCcEEEEEEE
Confidence            56676654    35778899987   589887888642            45789999999999 59999998

Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.56  E-value=0.0075  Score=66.57  Aligned_cols=66  Identities=29%  Similarity=0.467  Sum_probs=49.0

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCe-eEEEEEEEC-Cee--ecC
Q 013544          350 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVD  422 (441)
Q Consensus       350 ~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPG-rYEYKFIVD-GeW--~~D  422 (441)
                      ..|+|+...+ |++|.|.|+||+|... .+|.+.           ...|+|.+.+. +++| .|.|++..+ |.|  ..|
T Consensus       131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D  199 (726)
T PRK05402        131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-----------GESGVWELFIPGLGEGELYKFEILTADGELLLKAD  199 (726)
T ss_pred             CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc-----------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCC
Confidence            3689998887 9999999999999754 578764           25799999985 6777 677776654 454  445


Q ss_pred             CCCC
Q 013544          423 PQRE  426 (441)
Q Consensus       423 Pd~P  426 (441)
                      |-.-
T Consensus       200 PYa~  203 (726)
T PRK05402        200 PYAF  203 (726)
T ss_pred             CceE
Confidence            5443

>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2

Probab=96.47  E-value=0.027  Score=47.17  Aligned_cols=64  Identities=27%  Similarity=0.591  Sum_probs=46.7

Q ss_pred             EEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe--eEEEEEEE--C--
Q 013544          352 VEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--D--  416 (441)
Q Consensus       352 VTFtW~~----~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG--rYEYKFIV--D--  416 (441)
                      |+|+...    .+..|+|+|+-   .+|++.  ++|...            ....|.+.+.+|++  .++|||++  +  
T Consensus         2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~~p~~~~~ieYKyvi~~~~~   69 (99)
T cd05816           2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDV------------GFPIWEADIDISKDSFPFEYKYIIANKDS   69 (99)
T ss_pred             EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCC------------CCCcEEEEEEeCCCCccEEEEEEEEeCCC
Confidence            5566544    38899999996   589853  578642            46789999999886  59999998  2  


Q ss_pred             C--eeecCCCCCc
Q 013544          417 G--QWKVDPQRES  427 (441)
Q Consensus       417 G--eW~~DPd~Pt  427 (441)
                      |  .|..-++.-.
T Consensus        70 ~~~~WE~g~nr~~   82 (99)
T cd05816          70 GVVSWENGPNREL   82 (99)
T ss_pred             CcEEEEcCCCeEE
Confidence            3  2777665544

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star

>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.44  E-value=0.024  Score=47.54  Aligned_cols=73  Identities=22%  Similarity=0.254  Sum_probs=50.0

Q ss_pred             ceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---
Q 013544          349 LEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---  415 (441)
Q Consensus       349 L~~VTFtW~~----~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---  415 (441)
                      .++|+|....    .+..|+|+|+-   .+|++.  +.|...        ......+.|.+.+.||.| .++|||++   
T Consensus         2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~--------~~~~~~~~W~~~~~lp~~~~~eyK~~~~~~   73 (101)
T cd05807           2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFN--------QVVYQYPNWYYDVSVPAGTTIEFKFIKKNG   73 (101)
T ss_pred             cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccc--------cCCCcCCcEEEEEEcCCCCcEEEEEEEECC
Confidence            4678888753    38999999987   499864  222211        001256789999999999 79999999   


Q ss_pred             CCe--eecCCCCCccc
Q 013544          416 DGQ--WKVDPQRESVT  429 (441)
Q Consensus       416 DGe--W~~DPd~PtVt  429 (441)
                      ||.  |...++.-...
T Consensus        74 ~~~~~WE~g~nr~~~~   89 (101)
T cd05807          74 DNTVTWESGSNHTYTA   89 (101)
T ss_pred             CCCEEEEeCCCEEEeC
Confidence            453  87766554433

CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific

>PLN02316 synthase/transferase

Probab=95.91  E-value=0.097  Score=60.71  Aligned_cols=64  Identities=13%  Similarity=0.357  Sum_probs=46.0

Q ss_pred             CCceEEEEEEec------CCceEEEEeeeCCCccccc--cCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE-CC
Q 013544          347 SGLEVVEIQYSG------DGEIVEVAGSFNGWHHRIK--MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG  417 (441)
Q Consensus       347 sgL~~VTFtW~~------~AksVeVaGSFNnW~~~Ip--M~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIV-DG  417 (441)
                      ..-.+|++.|+.      +..+|.|.|.||+|.+...  +..-       +...+.++.|.+++.+|+.-|-.-|+. ||
T Consensus       326 ~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~-------~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg  398 (1036)
T PLN02316        326 KAGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLV-------KSEEKDGDWWYAEVVVPERALVLDWVFADG  398 (1036)
T ss_pred             CCCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceee-------cccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence            334689999983      3689999999999987421  1110       111224558889999999999999997 66

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=95.82  E-value=0.027  Score=61.15  Aligned_cols=68  Identities=24%  Similarity=0.324  Sum_probs=50.5

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEEC---Ce--eec
Q 013544          350 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKV  421 (441)
Q Consensus       350 ~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVD---Ge--W~~  421 (441)
                      ..++|+..++ |+.|.|.|+||+|... .+|.+.           ...|+|++.+. +.+|. .|+|.|+   |.  ++.
T Consensus        28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~   95 (613)
T TIGR01515        28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-----------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKA   95 (613)
T ss_pred             CcEEEEEECCCCCEEEEEEecCCCCCceecceEe-----------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeC
Confidence            4688988777 9999999999999754 578753           24799999986 46675 5888884   54  467


Q ss_pred             CCCCCccc
Q 013544          422 DPQRESVT  429 (441)
Q Consensus       422 DPd~PtVt  429 (441)
                      ||-.-.+.
T Consensus        96 DPYA~~~~  103 (613)
T TIGR01515        96 DPYAFYAE  103 (613)
T ss_pred             CCCEeeec
Confidence            88665443

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=95.80  E-value=0.054  Score=45.68  Aligned_cols=65  Identities=26%  Similarity=0.447  Sum_probs=46.6

Q ss_pred             EEEEEEe-c---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---CC
Q 013544          351 VVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG  417 (441)
Q Consensus       351 ~VTFtW~-~---~AksVeVaGSFN---nW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---DG  417 (441)
                      .|+|... +   .+..|+|+|+..   +|++.  ++|...            ....|.+.+.||.| ..+|||++   +|
T Consensus         2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~lp~~~~veyKyv~~~~~~   69 (97)
T cd05810           2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT------------AYPTWSGSISLPASTNVEWKCLKRNETN   69 (97)
T ss_pred             eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC------------CCCeEEEEEEcCCCCeEEEEEEEEcCCC
Confidence            4566633 2   389999999884   99854  556532            45789999999999 79999998   22


Q ss_pred             -----eeecCCCCCc
Q 013544          418 -----QWKVDPQRES  427 (441)
Q Consensus       418 -----eW~~DPd~Pt  427 (441)
                           .|...++.-.
T Consensus        70 ~~~~v~WE~g~Nr~~   84 (97)
T cd05810          70 PTAGVQWQGGGNNQL   84 (97)
T ss_pred             CcceEEEeeCCCEEE
Confidence                 4766666543

Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>PRK05402 glycogen branching enzyme; Provisional

Probab=95.77  E-value=0.018  Score=63.58  Aligned_cols=62  Identities=21%  Similarity=0.095  Sum_probs=46.1

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE--CCe--eecCCCC
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ--WKVDPQR  425 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIV--DGe--W~~DPd~  425 (441)
                      -|+|+..+| |++|.|+|+||+ ....+|.+.           ...|+|++.+++..|.. |||.|  ||+  .+.||-.
T Consensus        29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-----------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya   95 (726)
T PRK05402         29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-----------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR   95 (726)
T ss_pred             cEEEEEECCCCeEEEEEeecCC-CccccceEc-----------CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence            567876666 999999999996 445688863           36799999999888843 55555  885  5557655

>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1

Probab=94.89  E-value=0.091  Score=43.93  Aligned_cols=65  Identities=18%  Similarity=0.410  Sum_probs=44.1

Q ss_pred             EEEEEec--C-CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---CCe-
Q 013544          352 VEIQYSG--D-GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DGQ-  418 (441)
Q Consensus       352 VTFtW~~--~-AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---DGe-  418 (441)
                      |+|...+  . |+.|+|+|+-   .+|+..  ++|...         .+.....|.+.+.+|++ .++|||+|   ||. 
T Consensus         2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~---------~~~~~~~W~~~v~~~~~~~veYky~v~~~~~~~   72 (101)
T cd05815           2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPS---------HQGDVLVWSGSISVPPGFSSEYNYYVVDDRKSV   72 (101)
T ss_pred             EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeec---------CCCCCCEEEEEEEeCCCCcEEEEEEEEcCCCcE
Confidence            4555443  3 8999999987   589754  567531         01234589999999988 69999999   342 


Q ss_pred             --eecCCCC
Q 013544          419 --WKVDPQR  425 (441)
Q Consensus       419 --W~~DPd~  425 (441)
                        |-..++.
T Consensus        73 ~~wE~g~nr   81 (101)
T cd05815          73 LRSESGEKR   81 (101)
T ss_pred             EEeecCCCE
Confidence              6555543

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol

>TIGR02104 pulA_typeI pullulanase, type I

Probab=94.12  E-value=0.15  Score=55.35  Aligned_cols=66  Identities=24%  Similarity=0.318  Sum_probs=47.0

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-cCCe-eEEEEEEECCe--ee
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVDGQ--WK  420 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~~-----~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPG-rYEYKFIVDGe--W~  420 (441)
                      .|+|+..++ |++|.|.+ |++|..     .++|.+.            ..|+|++.+. +.+| .|.|++-.+|.  ++
T Consensus        20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~------------~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~   86 (605)
T TIGR02104        20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG------------ENGVWSAVLEGDLHGYFYTYQVCINGKWRET   86 (605)
T ss_pred             eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC------------CCCEEEEEECCCCCCCEEEEEEEcCCCeEEE
Confidence            489988777 99999997 888853     4678763            5799999996 5666 44444444565  48


Q ss_pred             cCCCCCccc
Q 013544          421 VDPQRESVT  429 (441)
Q Consensus       421 ~DPd~PtVt  429 (441)
                      .||-...+.
T Consensus        87 ~DPya~~~~   95 (605)
T TIGR02104        87 VDPYAKAVT   95 (605)
T ss_pred             cCCCcceec
Confidence            888665543

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=93.96  E-value=0.13  Score=42.90  Aligned_cols=63  Identities=24%  Similarity=0.550  Sum_probs=39.0

Q ss_pred             EEEEEEec------CCceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE-CC--ee
Q 013544          351 VVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG--QW  419 (441)
Q Consensus       351 ~VTFtW~~------~AksVeVaGSFNnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIV-DG--eW  419 (441)
                      +|+|.|..      ++..|.+.+.|++|+..  +.|.+..        .....+.|.+++.+|..-|+..|+. ||  .|
T Consensus         3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~--------~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w   74 (87)
T PF03423_consen    3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMC--------VPDEGGWWKATVDVPEDAYVMDFVFNDGAGNW   74 (87)
T ss_dssp             EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEES--------S---TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred             EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceee--------eeecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence            68888843      36889999999999865  4565421        1123799999999999999999998 65  56


Q ss_pred             ec
Q 013544          420 KV  421 (441)
Q Consensus       420 ~~  421 (441)
                      -.
T Consensus        75 DN   76 (87)
T PF03423_consen   75 DN   76 (87)
T ss_dssp             ES
T ss_pred             eC
Confidence            43

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=93.76  E-value=0.54  Score=41.51  Aligned_cols=56  Identities=21%  Similarity=0.415  Sum_probs=38.3

Q ss_pred             EEecCCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe----eEEEEEEE
Q 013544          355 QYSGDGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG----TYEIKFIV  415 (441)
Q Consensus       355 tW~~~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG----rYEYKFIV  415 (441)
                      ++-.++.+|+|+|+-   .+|+..  ++|....-+     ........|.+.+.|++|    .++|||+.
T Consensus        10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt-----~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~   74 (112)
T cd05806          10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKA-----LSPQEPSLWLGEVELSEPGSEDTFWYKFLK   74 (112)
T ss_pred             eecCCCCEEEEEECchhcCCCCccccccccccccc-----ccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence            344468999999986   599854  556542000     000234579999999986    69999998

Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen

>PLN02316 synthase/transferase

Probab=93.60  E-value=0.28  Score=57.04  Aligned_cols=56  Identities=27%  Similarity=0.427  Sum_probs=44.1

Q ss_pred             ceEEEEEEecC------CceEEEEeeeCCCcccc------ccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE
Q 013544          349 LEVVEIQYSGD------GEIVEVAGSFNGWHHRI------KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV  415 (441)
Q Consensus       349 L~~VTFtW~~~------AksVeVaGSFNnW~~~I------pM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIV  415 (441)
                      -.+|++.|+..      ..+|++.|+||.|.+.-      +|.+.           ...+.|.+++.+|...|-..|+-
T Consensus       490 G~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~-----------~~g~~~~a~v~vP~da~~mdfvF  557 (1036)
T PLN02316        490 GTTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPA-----------DNGSHLKATVKVPLDAYMMDFVF  557 (1036)
T ss_pred             CCEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeec-----------CCCceEEEEEEccccceEEEEEE
Confidence            46899999752      58899999999998762      35543           23456689999999999999987

>PRK10439 enterobactin/ferric enterobactin esterase; Provisional

Probab=92.11  E-value=0.67  Score=48.37  Aligned_cols=81  Identities=19%  Similarity=0.220  Sum_probs=56.4

Q ss_pred             CCceEEEEEEecC-C-------ceEEEEeeeCCCc------cccccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEE
Q 013544          347 SGLEVVEIQYSGD-G-------EIVEVAGSFNGWH------HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEI  411 (441)
Q Consensus       347 sgL~~VTFtW~~~-A-------ksVeVaGSFNnW~------~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEY  411 (441)
                      .+.+.|||-|.++ +       ..|+|-  .|+..      ....|.+-+           .+.+|..++.||.. +-.|
T Consensus        36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~--~n~~tdh~~~~~~~~l~rl~-----------~tDvW~~~~~~p~~~r~sY  102 (411)
T PRK10439         36 DGMVRVTFWWRDPQGDEEHSTIRRVWIY--INGVTDHHQNSQPQSLQRIA-----------GTDVWQWSTELSANWRGSY  102 (411)
T ss_pred             CCcEEEEEEeeCCCCCcccccceeEEEe--CCCCCCcCccCCcchhhccC-----------CCceEEEEEEECcccEEEE
Confidence            4568999999985 2       258873  33333      333687763           57899999999999 8999


Q ss_pred             EEEEC---C-------------------------eeecCCCCCcccC--CCccceEEEe
Q 013544          412 KFIVD---G-------------------------QWKVDPQRESVTK--GGICNNILRV  440 (441)
Q Consensus       412 KFIVD---G-------------------------eW~~DPd~PtVtD--~Gn~NNVL~V  440 (441)
                      +|+++   .                         .=+.||.||....  .|...|+|++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l  161 (411)
T PRK10439        103 CFIPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM  161 (411)
T ss_pred             EEEeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence            99993   1                         1148999998653  2444577664

>PLN02950 4-alpha-glucanotransferase

Probab=91.89  E-value=0.91  Score=52.30  Aligned_cols=70  Identities=20%  Similarity=0.378  Sum_probs=52.2

Q ss_pred             ceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe--eEEEEEEE--
Q 013544          349 LEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--  415 (441)
Q Consensus       349 L~~VTFtW~~----~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG--rYEYKFIV--  415 (441)
                      .+.|+|+...    .|..|+|+|+-   .+|++.  ++|..            .....|.+.+.++.+  ..+|||++  
T Consensus       152 ~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~------------~~~p~W~~~v~lp~~~~~~EYKyv~~~  219 (909)
T PLN02950        152 EIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY------------TGDSIWEADCLVPKSDFPIKYKYALQT  219 (909)
T ss_pred             ceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc------------CCCCcEEEEEEecCCCceEEEEEEEEc
Confidence            4678888654    38999999987   599864  45653            246789999999988  59999998  


Q ss_pred             -CCe--eecCCCCCcccC
Q 013544          416 -DGQ--WKVDPQRESVTK  430 (441)
Q Consensus       416 -DGe--W~~DPd~PtVtD  430 (441)
                       +|.  |-..++.-....
T Consensus       220 ~~g~v~WE~g~NR~~~~p  237 (909)
T PLN02950        220 AEGLVSLELGVNRELSLD  237 (909)
T ss_pred             CCCceEEeeCCCceeecC
Confidence             453  877776655443

>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase

Probab=91.84  E-value=0.95  Score=40.10  Aligned_cols=79  Identities=22%  Similarity=0.281  Sum_probs=53.5

Q ss_pred             eEEEEEEe----cCCceEEEEeeeCCCcccc-----ccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEECCe-
Q 013544          350 EVVEIQYS----GDGEIVEVAGSFNGWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ-  418 (441)
Q Consensus       350 ~~VTFtW~----~~AksVeVaGSFNnW~~~I-----pM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIVDGe-  418 (441)
                      ..|||.|.    +....|.|-|..|++..+.     .|.+-           ..+.+|..++.||.+ +=.|.|+.+-. 
T Consensus         2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl-----------~gTDVW~~t~~lp~d~rgSY~~~p~~~~   70 (122)
T PF11806_consen    2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL-----------PGTDVWYWTYRLPADWRGSYSFIPDVPD   70 (122)
T ss_dssp             -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE------------TTSSEEEEEEEEETT-EEEEEEEEES-T
T ss_pred             cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC-----------CCCceEEEEEEECcccEEEEEEEecCcc
Confidence            47999999    3468899999999996542     46654           256899999999999 89999997533 


Q ss_pred             ---------------eecCCCCCccc-C----CCccceEEE
Q 013544          419 ---------------WKVDPQRESVT-K----GGICNNILR  439 (441)
Q Consensus       419 ---------------W~~DPd~PtVt-D----~Gn~NNVL~  439 (441)
                                     =+.||-||... .    .|..-++++
T Consensus        71 ~~~~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~  111 (122)
T PF11806_consen   71 ARGAQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE  111 (122)
T ss_dssp             -HHHHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred             cchhHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence                           36799999754 2    367777765

The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=91.40  E-value=0.47  Score=52.80  Aligned_cols=55  Identities=22%  Similarity=0.371  Sum_probs=42.4

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCee
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW  419 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~~----~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDGeW  419 (441)
                      .|+|...++ |..|.|. .|++|..    .++|.+.            ..|+|.+.+. +.+|.| |+|.|+|.|
T Consensus        15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~g~~-Y~yrv~g~~   75 (688)
T TIGR02100        15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPER------------TDDIWHGYLPGAQPGQL-YGYRVHGPY   75 (688)
T ss_pred             cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccC------------CCCEEEEEECCCCCCCE-EEEEEeeee
Confidence            588988777 8999986 6776652    3578653            5799999995 788875 999999854

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>PLN02950 4-alpha-glucanotransferase

Probab=89.04  E-value=1.9  Score=49.82  Aligned_cols=67  Identities=18%  Similarity=0.440  Sum_probs=47.1

Q ss_pred             eEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---CC
Q 013544          350 EVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG  417 (441)
Q Consensus       350 ~~VTFtW~~---~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---DG  417 (441)
                      +.|+|..++   -|..|.|+|+-   .+|+..  ++|...         .+.....|++++.|+.| ..+|||+|   ||
T Consensus         9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~---------~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g   79 (909)
T PLN02950          9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPV---------HQGDELVWEGSVSVPEGFSCEYSYYVVDDNK   79 (909)
T ss_pred             EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccc---------cCCCCCeEEEEEEecCCCeEEEEEEEEeCCC
Confidence            556666554   38999999998   489754  667532         11234589999999988 69999995   44


Q ss_pred             e---eecCCCC
Q 013544          418 Q---WKVDPQR  425 (441)
Q Consensus       418 e---W~~DPd~  425 (441)
                      .   |-..++.
T Consensus        80 ~vi~WE~g~NR   90 (909)
T PLN02950         80 NVLRWEAGKKR   90 (909)
T ss_pred             ceeeeecCCCe
Confidence            3   7666643

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=88.10  E-value=1.2  Score=52.39  Aligned_cols=65  Identities=15%  Similarity=0.225  Sum_probs=47.5

Q ss_pred             EEEEEEecC-CceEEEEee-eCCCcc---ccccCCCCCCCccccccccCCCcEEEEEE-cCCe-----eEEEEEEECC--
Q 013544          351 VVEIQYSGD-GEIVEVAGS-FNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-----TYEIKFIVDG--  417 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGS-FNnW~~---~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPG-----rYEYKFIVDG--  417 (441)
                      .++|+..++ |..|.|.+- +++|..   .++|.+.            ..|+|++.+. +.+|     -|.|+|.|+|  
T Consensus       328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~------------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~  395 (1111)
T TIGR02102       328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG------------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGG  395 (1111)
T ss_pred             CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC------------CCCEEEEEECCcccCcccCCCceEEEEEECCC
Confidence            378988777 999999984 456653   4788863            6899999986 4443     3788999976  


Q ss_pred             --eeecCCCCCc
Q 013544          418 --QWKVDPQRES  427 (441)
Q Consensus       418 --eW~~DPd~Pt  427 (441)
                        ..+.||-...
T Consensus       396 ~~~~~~DPYA~a  407 (1111)
T TIGR02102       396 DKVLALDPYAKS  407 (1111)
T ss_pred             ceEEEeChhheE
Confidence              4577875543

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>PRK03705 glycogen debranching enzyme; Provisional

Probab=87.08  E-value=1.2  Score=49.44  Aligned_cols=55  Identities=24%  Similarity=0.399  Sum_probs=41.9

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCee
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW  419 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~--~~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDGeW  419 (441)
                      .|+|+..++ |..|.|.. |++|.  ..++|.+.            ..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus        20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~G~-~Y~yrv~g~~   78 (658)
T PRK03705         20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPAR------------SGDIWHGYLPGARPGL-RYGYRVHGPW   78 (658)
T ss_pred             CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeec------------cCCEEEEEECCCCCCC-EEEEEEcccc
Confidence            588988777 89999996 76653  34678652            5799999985 67775 4999999854

>PLN02960 alpha-amylase

Probab=85.58  E-value=0.77  Score=52.86  Aligned_cols=59  Identities=19%  Similarity=0.377  Sum_probs=41.6

Q ss_pred             EEEEE-EecCCceEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCcEEEEE--EcCCee-------EEEEEEEC
Q 013544          351 VVEIQ-YSGDGEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPGT-------YEIKFIVD  416 (441)
Q Consensus       351 ~VTFt-W~~~AksVeVaGSFNnW~~~I-pM~kd~ss~~~~~~~tkesG~FsttL--~LpPGr-------YEYKFIVD  416 (441)
                      .|.|. |--+|..+.|+|+||||.+.- .|.+       ..-++.+-|+|.+++  .|.+|.       -||.|..|
T Consensus       129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (897)
T PLN02960        129 RVDFMEWAPGARYCSLVGDFNNWSPTENRARE-------GYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD  198 (897)
T ss_pred             CeEEEEEcCCceeEEEeecccCCCcccchhhc-------ccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence            56665 544599999999999999763 3442       112345789999998  488882       36778775

>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain

Probab=84.13  E-value=4.7  Score=33.37  Aligned_cols=58  Identities=16%  Similarity=0.068  Sum_probs=38.0

Q ss_pred             eEEEEEEec---CCceEEEEeeeCC--Cc-cccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE
Q 013544          350 EVVEIQYSG---DGEIVEVAGSFNG--WH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV  415 (441)
Q Consensus       350 ~~VTFtW~~---~AksVeVaGSFNn--W~-~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIV  415 (441)
                      .+|+|+...   +...|.|.---+.  |. ..++|.+..+        +.....|.+++.++.|++.|.|+|
T Consensus        16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~--------~~~~~~~~~~i~~~~~~~~Y~F~l   79 (116)
T cd02857          16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGS--------DELFDYWEATLPPPTGRLRYYFEL   79 (116)
T ss_pred             CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeee--------CCceeEEEEEEecCCcEEEEEEEE
Confidence            456666643   3678888655443  22 2478876521        112246999999888999999999

Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=82.93  E-value=4.5  Score=46.87  Aligned_cols=68  Identities=19%  Similarity=0.236  Sum_probs=48.4

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEEC------Ce-
Q 013544          350 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ-  418 (441)
Q Consensus       350 ~~VTFtW~~~-AksVeVaGSFNnW~--~~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVD------Ge-  418 (441)
                      ..|+|+..++ |+.|.|.+.+++|.  ..++|.++           ...|+|++.+. ...|.| |+|.|+      |. 
T Consensus       135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-----------~~~GVWsv~v~g~~~G~~-Y~Y~V~v~~p~~G~v  202 (898)
T TIGR02103       135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-----------STSGVWSAEGGSSWKGAY-YRYEVTVYHPSTGKV  202 (898)
T ss_pred             CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-----------CCCCEEEEEECcCCCCCE-eEEEEEEecCCCCeE
Confidence            4689998887 89999997776664  24678764           25799999985 566653 777775      54 


Q ss_pred             ---eecCCCCCccc
Q 013544          419 ---WKVDPQRESVT  429 (441)
Q Consensus       419 ---W~~DPd~PtVt  429 (441)
                         .+.||-...+.
T Consensus       203 ~~~~v~DPYA~als  216 (898)
T TIGR02103       203 ETYLVTDPYSVSLS  216 (898)
T ss_pred             CCeEEeCcCcceEc
Confidence               36788665544

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	441
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	5e-19
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	2e-18
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	7e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	9e-05

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score = 81.1 bits (200), Expect = 5e-19
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 15/101 (14%)

Query: 341 AAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWST 400
             E++ +       +++G G+ V ++GSFN W  ++ M              R    +  
Sbjct: 2   VNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMT-------------RSQNNFVA 47

Query: 401 VLWLYPGTYEIKFIVDGQWKVDPQRESVTKG-GICNNILRV 440
           +L L  G ++ KF VDGQW  DP    VT   G  NNI++V
Sbjct: 48  ILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQV 88

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score = 83.5 bits (205), Expect = 2e-18
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 352 VEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEI 411
           VEI++   G  V V GSF  W   I + P              +  +   L L PGT+  
Sbjct: 6   VEIRWQQGGSKVYVTGSFTKWRKMIGLIPDS----------DNNGSFHVKLRLLPGTHRF 55

Query: 412 KFIVDGQWKVDPQRESVT-KGGICNNILRV 440
           +FIVD + +V     + T + G   N + V
Sbjct: 56  RFIVDNELRVSDFLPTATDQMGNFVNYIEV 85

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score = 67.9 bits (165), Expect = 7e-13
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 13/91 (14%)

Query: 353 EIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIK 412
                     VE++G   GW  RI +              + +  W     L  G +E K
Sbjct: 174 LTLKDKGFSRVEISGLDIGWGQRIPL-----------TLGKGTGFWILKRELPEGQFEYK 222

Query: 413 FIVDGQWKVDPQRESVT--KGGICNNILRVI 441
           +I+DG+W  +     +   K G  NN  +V+
Sbjct: 223 YIIDGEWTHNEAEPFIGPNKDGHTNNYAKVV 253

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 64/393 (16%), Positives = 123/393 (31%), Gaps = 105/393 (26%)

Query: 62  EELYNDLREFLSTVGLSESHVPSMK-ELSAHGRDDLAN---------IVRRRGYKFIRQL 111
           EE+     +FL +   +E   PSM   +    RD L N         + R + Y  +RQ 
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 112 LKSSTKPGFNGFVAEKSLAGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNLNGHYEKA 171
           L    +P     V    + G   KT +          +         +   +    +   
Sbjct: 144 LLE-LRP--AKNVLIDGVLG-SGKTWVAL--------DVCLSYKV--QCKMDFKIFWLNL 189

Query: 172 GNVTETFSSLADSSILENHSS-SSNINPSL-ILDEHGY-LSLQSSDMEEKVANFIQNGD- 227
            N           ++LE        I+P+     +H   + L+   ++ ++   +++   
Sbjct: 190 KNCNS------PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 228 ---LDIIED-------RAM-----ILNGSALTS--KQIASF---ATVNHPLSEDHLGTGV 267
              L ++ +        A      IL    LT+  KQ+  F   AT  H   + H  T  
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKIL----LTTRFKQVTDFLSAATTTHISLDHHSMT-- 297

Query: 268 EGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEK-LALSVLQTKAVTEIN 326
                   E         +  LK++    +     L  ++       LS++       + 
Sbjct: 298 ----LTPDEV------KSL-LLKYL----DCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 327 KAE---KLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPS 383
             +    +  DK   +I  E SL+ LE  E +                     ++   P 
Sbjct: 343 TWDNWKHVNCDKLTTII--ESSLNVLEPAEYR-----------------KMFDRLSVFPP 383

Query: 384 SSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD 416
           S+ I         L  +++W      ++  +V+
Sbjct: 384 SAHIPT-----ILL--SLIWFDVIKSDVMVVVN 409

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 8e-05
 Identities = 52/416 (12%), Positives = 112/416 (26%), Gaps = 101/416 (24%)

Query: 22  WHPPRKHLSFTICCASSS--------SSNKSSSSSSSSSRSSRKVKSNEELYNDLREFLS 73
           W      L+   C +  +              + +S S  SS        +  +LR  L 
Sbjct: 186 W------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 74  TVGLSES-----HVPSMKELSAHG---------RD-DLANIVRRRGYKFIRQLLKSSTKP 118
           +           +V + K  +A           R   + + +       I      S   
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI------SLDH 293

Query: 119 GFNGFVAEKSLA--GSCIKTDLHSDIYSLPPTESLSDP---SFVGEV---SPNLNGHYEK 170
                  ++  +         L      LP     ++P   S + E          +++ 
Sbjct: 294 HSMTLTPDEVKSLLLKY----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 171 AGNVTETFSSLADSSILENHSSSSNINPSLILDEHGYLSL----QSSDMEEKVANFI-QN 225
                +  +++ +SS+       + + P+       +  L     S+ +   + + I  +
Sbjct: 350 VNC--DKLTTIIESSL-------NVLEPAEY--RKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 226 GDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADF-----DSSEARRR 280
                +      L+  +L  KQ          +  +                D     + 
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 281 ENQ-----LEID-----HLKFMLHQKEMELSRLKEQIEKEKLALSVLQTK---------- 320
            +        +D     H+    H K +E            L    L+ K          
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGH--HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516

Query: 321 ------AVTEINKAEKLISDKD---EELIAA-EESLSGLEVVEIQYSGDGEIVEVA 366
                  + ++   +  I D D   E L+ A  + L  +E   I  S   +++ +A
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC-SKYTDLLRIA 571

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 14/80 (17%)

Query: 352 VEIQYSGDGEIVEVAGSFNGWH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYE 410
               +    + + + G F   +   +K+              +        L L+PG Y 
Sbjct: 22  FTRHWPQYAKNIYLIGEFTSLYPGFVKL-------------RKIEEQGIVYLKLWPGEYG 68

Query: 411 IKFIVDGQWKVDPQRESVTK 430
             F +D  ++     ++  K
Sbjct: 69  YGFQIDNDFENVLDPDNEEK 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	441
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.87
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	99.86
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	99.86
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	99.47
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	99.16
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	98.21
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	98.17
1ac0_A	108	Glucoamylase; hydrolase, starch binding domain; HE	97.86
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	97.46
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	97.28
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	97.14
2laa_A	104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	95.9
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	95.89
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	95.86
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	95.73
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	95.68
2vn4_A	599	Glucoamylase; hydrolase, carbohydrate binding, gly	95.61
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	95.5
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	95.3
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	95.2
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	95.17
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	94.85
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	94.65
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	93.79
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	93.67
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	93.14
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	92.36
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	91.76
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	91.39
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	91.23
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	91.2
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	91.13
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	90.92
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	87.83
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	86.11
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	86.1
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	85.64

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.87  E-value=3.3e-22  Score=165.56  Aligned_cols=81  Identities=35%  Similarity=0.593  Sum_probs=73.5

Q ss_pred             CCceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCeeecCCCCC
Q 013544          347 SGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRE  426 (441)
Q Consensus       347 sgL~~VTFtW~~~AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDGeW~~DPd~P  426 (441)
                      ...++|+|+|..+|+.|+|+|+||+|+ .++|.+.             .|.|++++.|++|.|+|||+|||.|++||..|
T Consensus         8 ~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~-------------~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~   73 (96)
T 1z0n_A            8 AQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRS-------------QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEP   73 (96)
T ss_dssp             --CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEE-------------TTEEEEEEEECSEEEEEEEEETTEEECCTTSC
T ss_pred             CCceEEEEEECCCCcEEEEEEEeCCCc-cccCEEC-------------CCEEEEEEEccCCCEEEEEEECCeEEcCCCCC
Confidence            456899999998899999999999999 7899863             48999999999999999999999999999999


Q ss_pred             cccC-CCccceEEEeC
Q 013544          427 SVTK-GGICNNILRVI  441 (441)
Q Consensus       427 tVtD-~Gn~NNVL~V~  441 (441)
                      ++.+ .|+.||+|.|.
T Consensus        74 ~~~d~~G~~Nnvi~V~   89 (96)
T 1z0n_A           74 IVTSQLGTVNNIIQVK   89 (96)
T ss_dssp             EEECTTSCEEEEEEEC
T ss_pred             eEECCCCCEeEEEEEc
Confidence            9887 79999999984

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=99.86  E-value=5.1e-22  Score=190.15  Aligned_cols=84  Identities=31%  Similarity=0.438  Sum_probs=77.2

Q ss_pred             CceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCeeecCCCCCc
Q 013544          348 GLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES  427 (441)
Q Consensus       348 gL~~VTFtW~~~AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDGeW~~DPd~Pt  427 (441)
                      .+++|+|+|.++|++|+|+|+|++|++.++|.+..          .++|.|++++.|+||+|+|||+|||+|++||++|+
T Consensus         2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~----------~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~   71 (252)
T 2qlv_B            2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDS----------DNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPT   71 (252)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECS----------SSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCE
T ss_pred             CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceecc----------CCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCE
Confidence            56899999999999999999999999889998741          25789999999999999999999999999999999


Q ss_pred             ccC-CCccceEEEeC
Q 013544          428 VTK-GGICNNILRVI  441 (441)
Q Consensus       428 VtD-~Gn~NNVL~V~  441 (441)
                      +.+ .|+.||+|.|.
T Consensus        72 ~~d~~G~~nNvi~V~   86 (252)
T 2qlv_B           72 ATDQMGNFVNYIEVR   86 (252)
T ss_dssp             EBCSSCCCEEEEEEC
T ss_pred             EecCCCcCcceeecc
Confidence            887 79999999984

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=99.86  E-value=3.4e-22  Score=192.50  Aligned_cols=83  Identities=25%  Similarity=0.460  Sum_probs=75.6

Q ss_pred             CceEEEEEEec-CCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCeeecCCCCC
Q 013544          348 GLEVVEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRE  426 (441)
Q Consensus       348 gL~~VTFtW~~-~AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDGeW~~DPd~P  426 (441)
                      ..++|+|+|++ +|++|+|+|+||||+.+++|.++           ..+|.|++++.||||+|+|||+|||+|++||++|
T Consensus       168 ~k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~-----------~~~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~  236 (294)
T 3nme_A          168 KRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLG-----------KGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEP  236 (294)
T ss_dssp             CCEEEEEEEECSSCSCEEEEETTTEEEEEEECEEC-----------TTTCEEEEEEEECSEEEEEEEEETTEEECCTTSC
T ss_pred             ccccceeeeccCCCCEEEEEEeccCCCCcccceEc-----------CCCCEEEEEEECCCceEEEEEEECCEEeeCCCCC
Confidence            34899999999 58999999999999988999986           2479999999999999999999999999999999


Q ss_pred             cc-cC-CCccceEEEeC
Q 013544          427 SV-TK-GGICNNILRVI  441 (441)
Q Consensus       427 tV-tD-~Gn~NNVL~V~  441 (441)
                      .+ .| .|+.||||.|.
T Consensus       237 ~~~~d~~G~~nn~~~v~  253 (294)
T 3nme_A          237 FIGPNKDGHTNNYAKVV  253 (294)
T ss_dssp             EECSCTTSCCEEEEEEC
T ss_pred             eeeECCCCCEeEEEEEC
Confidence            87 45 79999999984

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=99.47  E-value=4.2e-14  Score=149.08  Aligned_cols=79  Identities=19%  Similarity=0.221  Sum_probs=67.4

Q ss_pred             CCceEEEEEEec--CCceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCeee--c
Q 013544          347 SGLEVVEIQYSG--DGEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK--V  421 (441)
Q Consensus       347 sgL~~VTFtW~~--~AksVeVaGSFNnW~~-~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDGeW~--~  421 (441)
                      .+..+|+|+++.  +|+.|+|+|+||+|++ ..+|.+             .+|.|++++.||||+|+|||+|||+|.  +
T Consensus        15 ~~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~-------------~~~~~~~~~~L~~g~~~y~f~vdg~~~~~~   81 (696)
T 4aee_A           15 KGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRK-------------IEEQGIVYLKLWPGEYGYGFQIDNDFENVL   81 (696)
T ss_dssp             EEEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEE-------------ETTEEEEEEEECSEEEEEEEEETTCCSCCC
T ss_pred             CCcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEe-------------cCCeEEEEEEcCCceEEEEEEECCEEeecC
Confidence            356789999887  5899999999999975 367875             389999999999999999999999999  8


Q ss_pred             CCCCCccc---C-CCccceEE
Q 013544          422 DPQRESVT---K-GGICNNIL  438 (441)
Q Consensus       422 DPd~PtVt---D-~Gn~NNVL  438 (441)
                      ||++|...   + .|..|+|.
T Consensus        82 d~~~~~~~y~~~~~g~~n~~~  102 (696)
T 4aee_A           82 DPDNEEKKCVHTSFFPEYKKC  102 (696)
T ss_dssp             CTTCCCEEEEECSSCTTSEEE
T ss_pred             CCCCCcccccccCCcccccee
Confidence            89888644   3 58899885

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=99.16  E-value=3.8e-11  Score=125.10  Aligned_cols=68  Identities=22%  Similarity=0.510  Sum_probs=60.2

Q ss_pred             ceEEEEEEecCCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCeeecCCCCCc
Q 013544          349 LEVVEIQYSGDGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES  427 (441)
Q Consensus       349 L~~VTFtW~~~AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDGeW~~DPd~Pt  427 (441)
                      ...|.|.++..|+.|+|.|+||+|.+. .+|++             .++.|.+++.||||.|+|||+|||+|..||.+|.
T Consensus        16 ~~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~-------------~g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~   82 (645)
T 4aef_A           16 VAEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQ-------------EGKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPE   82 (645)
T ss_dssp             EEEEEEEEECCSSCEEEEETTTTTCTTSSEEEE-------------CSSEEEEEEEECSEEEEEEEEETTEEECCTTCCC
T ss_pred             EEEEEEecCCCCeEEEEEEcCCCCCCCcccceE-------------cCCEEEEEEEeCCceEEEEEEECCeEecCCCCCC
Confidence            457889999989999999999999864 56764             4689999999999999999999999999999986


Q ss_pred             cc
Q 013544          428 VT  429 (441)
Q Consensus       428 Vt  429 (441)
                      ..
T Consensus        83 ~~   84 (645)
T 4aef_A           83 RR   84 (645)
T ss_dssp             EE
T ss_pred             cc
Confidence            53

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=98.21  E-value=2.7e-06  Score=73.92  Aligned_cols=69  Identities=25%  Similarity=0.589  Sum_probs=53.5

Q ss_pred             CCceEEEEEEecC---CceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE--
Q 013544          347 SGLEVVEIQYSGD---GEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--  415 (441)
Q Consensus       347 sgL~~VTFtW~~~---AksVeVaGS---FNnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV--  415 (441)
                      .....|+|+....   +..|+|+|+   +.+|++.  ++|....        .+...+.|.+++.||.| .+||||+|  
T Consensus         6 ~~~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~--------~~~~~~~W~~~v~lp~~~~~eYKyvi~~   77 (131)
T 2z0b_A            6 SGPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPEN--------DTGESMLWKATIVLSRGVSVQYRYFKGY   77 (131)
T ss_dssp             CCCEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECC--------TTCCSSEEEEEEEECTTCCEEEEEEEEE
T ss_pred             CCeEEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccc--------cCCCCCeEEEEEEcCCCCcEEEEEEEEe
Confidence            3457899998863   799999999   8999974  6787531        11257899999999998 59999999  


Q ss_pred             ------C-C-------eeecCC
Q 013544          416 ------D-G-------QWKVDP  423 (441)
Q Consensus       416 ------D-G-------eW~~DP  423 (441)
                            + |       .|...+
T Consensus        78 ~~~~~~~~g~~~v~~~~WE~g~   99 (131)
T 2z0b_A           78 FLEPKTIGGPCQVIVHKWETHL   99 (131)
T ss_dssp             EECCCC----CEEEEEEECCSS
T ss_pred             ecCccccCCccccceeeECCCC
Confidence                  5 3       688877

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=98.17  E-value=3.6e-06  Score=82.93  Aligned_cols=81  Identities=21%  Similarity=0.206  Sum_probs=64.3

Q ss_pred             CCceEEEEEEecC-C-------ceEEEEeeeCCCcc------ccccCCCCCCCccccccccCCCcEEEEEEcCCeeE-EE
Q 013544          347 SGLEVVEIQYSGD-G-------EIVEVAGSFNGWHH------RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTY-EI  411 (441)
Q Consensus       347 sgL~~VTFtW~~~-A-------ksVeVaGSFNnW~~------~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrY-EY  411 (441)
                      .+.+.|||.|.++ |       ++|+|.  +++|..      ...|.+.           ..+|+|..++.|++|.| .|
T Consensus        28 ~~~~~vtF~~~~p~a~~~~~~~~~V~~~--~~~~~d~~~~~~~~~m~r~-----------~~~~~W~~t~~l~~~~~~~Y   94 (403)
T 3c8d_A           28 DEMFEVTFWWRDPQGSEEYSTIKRVWVY--ITGVTDHHQNSQPQSMQRI-----------AGTDVWQWTTQLNANWRGSY   94 (403)
T ss_dssp             SSEEEEEEEEECTTCSTTTCCCCEEEEE--ETTTC-------CCBCEEC-----------TTSSEEEEEEEEETTCEEEE
T ss_pred             CCcEEEEEEeeCCCcccccCccceEEEE--CcCCCccccccCccccccC-----------CCCCeEEEEEEECCCcEEEE
Confidence            3467999999997 5       789998  344432      2468774           26899999999999999 99


Q ss_pred             EEEEC------------------------CeeecCCCCCcccC-C-CccceEEEe
Q 013544          412 KFIVD------------------------GQWKVDPQRESVTK-G-GICNNILRV  440 (441)
Q Consensus       412 KFIVD------------------------GeW~~DPd~PtVtD-~-Gn~NNVL~V  440 (441)
                      .|+||                        |..+.||.+|.... . |...|+|+|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~  149 (403)
T 3c8d_A           95 CFIPTERDDIFSAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEM  149 (403)
T ss_dssp             EEEEESCCSTTCCC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEEC
T ss_pred             EEEecCcccccccccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccC
Confidence            99999                        78899999998764 4 777888876

>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A

Probab=97.86  E-value=8.5e-06  Score=67.70  Aligned_cols=75  Identities=27%  Similarity=0.538  Sum_probs=56.0

Q ss_pred             CceEEEEEEecC---CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE-C-
Q 013544          348 GLEVVEIQYSGD---GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D-  416 (441)
Q Consensus       348 gL~~VTFtW~~~---AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV-D-  416 (441)
                      +...|+|.....   |+.|+|+|+.   .+|++.  ++|....        .+.+.+.|++++.||+| .+||||+| | 
T Consensus         5 ~~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~v~~~   76 (108)
T 1ac0_A            5 TAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADK--------YTSSDPLWYVTVTLPAGESFEYKFIRIES   76 (108)
T ss_dssp             CCCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSS--------SSSSCSSCEEEECCCSSSCEECCCEECCS
T ss_pred             CeEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccc--------cCCcCCeEEEEEEeCCCCeEEEEEEEEcC
Confidence            446788888763   7999999986   599864  6887531        11246899999999999 59999999 3 


Q ss_pred             -C--eeecCCCCCcccC
Q 013544          417 -G--QWKVDPQRESVTK  430 (441)
Q Consensus       417 -G--eW~~DPd~PtVtD  430 (441)
                       |  .|..+|+.-....
T Consensus        77 ~g~~~WE~g~nR~~~~p   93 (108)
T 1ac0_A           77 DDSVEWESDPNREYTVP   93 (108)
T ss_dssp             SSCCCCCCSSCCEECCC
T ss_pred             CCCEEeccCCCEEEECC
Confidence             4  4888887765544

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=97.46  E-value=0.0003  Score=73.57  Aligned_cols=68  Identities=24%  Similarity=0.357  Sum_probs=53.1

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEE---CCee--ec
Q 013544          350 EVVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQW--KV  421 (441)
Q Consensus       350 ~~VTFtW~~~-AksVeVaGSFNnW~~-~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIV---DGeW--~~  421 (441)
                      ..|+|+..++ |+.|.|.|+|++|.. .++|.+.           ...|+|++++. +.+|.+ |+|.|   ||.+  ..
T Consensus        25 ~gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~-----------~~~GvW~~~v~~~~~g~~-Y~f~i~~~~g~~~~~~   92 (617)
T 1m7x_A           25 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLR-----------KESGIWELFIPGAHNGQL-YKYEMIDANGNLRLKS   92 (617)
T ss_dssp             EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCC-----------TTTTEEEEEEETCCTTCE-EEEEEECTTSCEEEEC
T ss_pred             CcEEEEEECCCCCEEEEEEEeCCCCCceeEeEEC-----------CCCCEEEEEEcCCCCCCE-EEEEEEcCCCcEEEec
Confidence            5789987766 999999999999974 4789863           25799999997 788875 99999   6775  56


Q ss_pred             CCCCCccc
Q 013544          422 DPQRESVT  429 (441)
Q Consensus       422 DPd~PtVt  429 (441)
                      ||-...+.
T Consensus        93 DPya~~~~  100 (617)
T 1m7x_A           93 DPYAFEAQ  100 (617)
T ss_dssp             CTTCSSEE
T ss_pred             Cccceeec
Confidence            77655443

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=97.28  E-value=0.00038  Score=75.23  Aligned_cols=69  Identities=26%  Similarity=0.342  Sum_probs=53.6

Q ss_pred             ceEEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEE---CCee--e
Q 013544          349 LEVVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQW--K  420 (441)
Q Consensus       349 L~~VTFtW~~~-AksVeVaGSFNnW~~-~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIV---DGeW--~  420 (441)
                      ...|+|...++ |+.|.|.|+||+|+. .++|.+.           ...|+|.+.+. +.+|. .|||.|   ||+|  +
T Consensus       135 ~~g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~  202 (722)
T 3k1d_A          135 VSGVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVL-----------GPSGVWELFWPDFPCDG-LYKFRVHGADGVVTDR  202 (722)
T ss_dssp             EEEEEEEEECTTCSEEEEEEGGGTTCCCSCBCEEC-----------GGGCEEEEEEETCCTTC-EEEEEEECTTSCEEEE
T ss_pred             CceEEEEEECCCCCEEEEEeecCCCCCCcccCEEc-----------CCCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEe
Confidence            45689998777 999999999999985 4788764           24699999997 88885 588888   5764  6


Q ss_pred             cCCCCCccc
Q 013544          421 VDPQRESVT  429 (441)
Q Consensus       421 ~DPd~PtVt  429 (441)
                      .||-...+.
T Consensus       203 ~DPya~~~~  211 (722)
T 3k1d_A          203 ADPFAFGTE  211 (722)
T ss_dssp             CCTTCSSBC
T ss_pred             ecccceeec
Confidence            788766544

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=97.14  E-value=0.00052  Score=74.24  Aligned_cols=63  Identities=21%  Similarity=0.394  Sum_probs=49.2

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-------cCCeeEEEEEEEC---Ce
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ  418 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~~-~IpM~kd~ss~~~~~~~tkesG~FsttL~-------LpPGrYEYKFIVD---Ge  418 (441)
                      .|+|...++ |+.|.|.|+||+|.. .++|.+.            ..|+|.+.+.       +++|.+ |||.|+   |.
T Consensus        66 gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~------------~~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~  132 (755)
T 3aml_A           66 ATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKD------------KFGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGA  132 (755)
T ss_dssp             EEEEEEECTTCSEEEEEEGGGTTCCTTCBCEEC------------TTSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCC
T ss_pred             eEEEEEECCCCCEEEEEEecCCCCCceeeceeC------------CCCEEEEEEcccccccCCCCCCE-EEEEEECCCCc
Confidence            688987766 999999999999975 4788763            5799999998       788875 888886   45


Q ss_pred             ee--cCCCCC
Q 013544          419 WK--VDPQRE  426 (441)
Q Consensus       419 W~--~DPd~P  426 (441)
                      |.  .||-..
T Consensus       133 ~~~~~dpya~  142 (755)
T 3aml_A          133 WVDRIPAWIR  142 (755)
T ss_dssp             CEEECCTTCS
T ss_pred             EEecCCcchh
Confidence            53  466443

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A

Probab=95.90  E-value=0.016  Score=49.35  Aligned_cols=66  Identities=18%  Similarity=0.227  Sum_probs=51.2

Q ss_pred             eEEEEEEecCCceEEEEeeeC--CCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEECCe--eecC
Q 013544          350 EVVEIQYSGDGEIVEVAGSFN--GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ--WKVD  422 (441)
Q Consensus       350 ~~VTFtW~~~AksVeVaGSFN--nW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIVDGe--W~~D  422 (441)
                      ..|+|.|..+.+.|+|-..+.  +|...  ++|.+.           .-++.+..++.|+.| .++|+|. ||.  |-.+
T Consensus         5 ~~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~-----------~~~gw~~~TI~l~~g~~~~~~F~-dG~~~WDNn   72 (104)
T 2laa_A            5 NKVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDA-----------EISGYAKITVDIGSASQLEAAFN-DGNNNWDSN   72 (104)
T ss_dssp             CEEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEE-----------TTTTEEEEEEECTTCSCEEEEEE-CSSSCEEST
T ss_pred             CEEEEEEcCCCCcEEEEEcCCCCCCCcCCccccccc-----------cCCCeEEEEEECCCCCEEEEEEe-CCCCcCcCC
Confidence            578999998899999999984  89864  678653           113433699999976 8999995 874  9988


Q ss_pred             CCCCc
Q 013544          423 PQRES  427 (441)
Q Consensus       423 Pd~Pt  427 (441)
                      +....
T Consensus        73 ~g~Ny   77 (104)
T 2laa_A           73 NTKNY   77 (104)
T ss_dssp             TTSCE
T ss_pred             CCccE
Confidence            77654

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=95.89  E-value=0.0083  Score=64.53  Aligned_cols=56  Identities=9%  Similarity=0.094  Sum_probs=44.7

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-cC------CeeEEEEEEECC
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LY------PGTYEIKFIVDG  417 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~~-----~IpM~kd~ss~~~~~~~tkesG~FsttL~-Lp------PGrYEYKFIVDG  417 (441)
                      .|+|...++ |+.|+|.+ |++|..     .++|.+.            ..|+|.+.+. +.      +|.|.|+|.|+|
T Consensus        17 ~~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g   83 (750)
T 1bf2_A           17 NITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPA------------GSGVWAVTVPVSSIKAAGITGAVYYGYRAWG   83 (750)
T ss_dssp             EEEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEEC------------STTEEEEEEEHHHHHHTTCCSCCEEEEEEEB
T ss_pred             EEEEEEECCCCCEEEEEE-EccCCCCccceEEecccC------------CCCEEEEEECCcccccccCCCCEEEEEEEEe
Confidence            388887666 99999998 987653     4678753            4699999986 67      999999999998


Q ss_pred             ee
Q 013544          418 QW  419 (441)
Q Consensus       418 eW  419 (441)
                      .|
T Consensus        84 ~~   85 (750)
T 1bf2_A           84 PN   85 (750)
T ss_dssp             TT
T ss_pred             ee
Confidence            54

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=95.86  E-value=0.02  Score=60.44  Aligned_cols=70  Identities=21%  Similarity=0.398  Sum_probs=52.9

Q ss_pred             ceEEEEEEec-----CCceEEEEeee---CCCcc--------cc-ccCCCCCCCccccccccCCCcEEEEEEcCCe-eEE
Q 013544          349 LEVVEIQYSG-----DGEIVEVAGSF---NGWHH--------RI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYE  410 (441)
Q Consensus       349 L~~VTFtW~~-----~AksVeVaGSF---NnW~~--------~I-pM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYE  410 (441)
                      .+.|+|+...     .|..|+|+|+.   -+|++        .+ +|..            .....|++++.||+| .+|
T Consensus       581 ~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~------------~~~~~W~~~v~l~~~~~~e  648 (686)
T 1qho_A          581 QTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLA------------PNYPDWFYVFSVPAGKTIQ  648 (686)
T ss_dssp             EEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBC------------TTTTSEEEEEEEETTCEEE
T ss_pred             eEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhccccc------------CCCCcEEEEEEeCCCCeEE
Confidence            4678888775     37899999998   48987        23 5543            256799999999999 599


Q ss_pred             EEEEE---CC--eeecCCCCCcccC
Q 013544          411 IKFIV---DG--QWKVDPQRESVTK  430 (441)
Q Consensus       411 YKFIV---DG--eW~~DPd~PtVtD  430 (441)
                      |||+|   +|  .|...|+.-....
T Consensus       649 yKy~~~~~~~~~~We~~~nr~~~~~  673 (686)
T 1qho_A          649 FKFFIKRADGTIQWENGSNHVATTP  673 (686)
T ss_dssp             EEEEEECTTSCEEECCSSCEEEECC
T ss_pred             EEEEEEcCCCCEEeCCCCCeeEECC
Confidence            99998   34  4888877665544

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=95.73  E-value=0.032  Score=58.86  Aligned_cols=74  Identities=22%  Similarity=0.315  Sum_probs=54.9

Q ss_pred             CceEEEEEEec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE-
Q 013544          348 GLEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-  415 (441)
Q Consensus       348 gL~~VTFtW~~----~AksVeVaGSFN---nW~~~--I-pM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV-  415 (441)
                      +.+.|+|+...    .++.|+|+|+-.   +|++.  + +|...         .+.....|++++.||.| .+||||++ 
T Consensus       578 ~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~---------~~~~~~~W~~~v~lp~~~~~eyK~v~~  648 (680)
T 1cyg_A          578 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQ---------VVYSYPTWYIDVSVPEGKTIEFKFIKK  648 (680)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCS---------SSSCTTCEEEEEEEESSCEEEEEEEEE
T ss_pred             CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccc---------cCCCCCcEEEEEEeCCCCcEEEEEEEE
Confidence            35678898876    389999999874   99875  5 66541         01256799999999988 79999997 


Q ss_pred             --CC--eeecCCCCCcccC
Q 013544          416 --DG--QWKVDPQRESVTK  430 (441)
Q Consensus       416 --DG--eW~~DPd~PtVtD  430 (441)
                        +|  .|...++.-....
T Consensus       649 ~~~~~~~WE~g~Nr~~~~~  667 (680)
T 1cyg_A          649 DSQGNVTWESGSNHVYTTP  667 (680)
T ss_dssp             CTTSCEEECCSSCEEEECC
T ss_pred             eCCCCeEeCCCCCeeEECC
Confidence              44  4888776655444

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=95.68  E-value=0.0057  Score=63.22  Aligned_cols=61  Identities=13%  Similarity=0.073  Sum_probs=50.8

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCe-eecCCCCCc
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-WKVDPQRES  427 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDGe-W~~DPd~Pt  427 (441)
                      .|+|+..++ |+.|.|.|.|+   ..++|.+.            ..|+|.+.+. +.+|. .|||.|||. ...||-...
T Consensus        10 ~~~f~vwap~a~~v~l~~~~~---~~~~m~~~------------~~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~   73 (558)
T 3vgf_A           10 EVIFTLWAPYQKSVKLKVLEK---GLYEMERD------------EKGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRY   73 (558)
T ss_dssp             EEEEEEECTTCSCCEEEETTT---EEEECEEC------------TTCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSC
T ss_pred             cEEEEEECCCCCEEEEEEecC---ceeecccC------------CCCEEEEEECCCCCCC-EEEEEEeCCccccCcchhh
Confidence            678987776 99999999987   56899874            5799999996 88995 699999997 888986653

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*

Probab=95.61  E-value=0.024  Score=60.07  Aligned_cols=73  Identities=27%  Similarity=0.522  Sum_probs=53.5

Q ss_pred             eEEEEEEecC---CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---CC
Q 013544          350 EVVEIQYSGD---GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG  417 (441)
Q Consensus       350 ~~VTFtW~~~---AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---DG  417 (441)
                      +.|+|.....   |+.|+|+|+-   .+|++.  ++|....        .+..+..|++++.||+| .+||||+|   +|
T Consensus       497 v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~--------~t~~~~~W~~~v~lp~~~~~eYKyvv~~~~g  568 (599)
T 2vn4_A          497 VAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVN--------YADNHPLWIGTVNLEAGDVVEYKYINVGQDG  568 (599)
T ss_dssp             EEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCTT--------CBTTBCEEEEEEEEETTCEEEEEEEEECTTC
T ss_pred             EEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeeccccc--------CCCCCCcEEEEEEcCCCCcEEEEEEEECCCC
Confidence            5688888763   8999999988   489864  6787531        11124799999999998 59999998   34


Q ss_pred             --eeecCCCCCcccC
Q 013544          418 --QWKVDPQRESVTK  430 (441)
Q Consensus       418 --eW~~DPd~PtVtD  430 (441)
                        .|...|+.-....
T Consensus       569 ~~~WE~g~NR~~~~p  583 (599)
T 2vn4_A          569 SVTWESDPNHTYTVP  583 (599)
T ss_dssp             CEEECCSSCEEEECC
T ss_pred             ceEeCCCCCEEEecC
Confidence              3877776655443

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=95.50  E-value=0.014  Score=61.71  Aligned_cols=54  Identities=24%  Similarity=0.334  Sum_probs=44.0

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCe
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ  418 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~--~~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDGe  418 (441)
                      .|+|+..++ |+.|.|.+ |+++.  ..++|.+.            ..|+|.+.+. +.+|.+ |+|.|+|.
T Consensus        20 g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~------------~~g~w~~~v~~~~~g~~-Y~y~v~~~   77 (657)
T 2wsk_A           20 GVNFTLFSAHAERVELCV-FDANGQEHRYDLPGH------------SGDIWHGYLPDARPGLR-YGYRVHGP   77 (657)
T ss_dssp             EEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEE------------ETTEEEEEEETCCTTCE-EEEEEECC
T ss_pred             eEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCC------------CCCEEEEEECCCCCCCE-EEEEEeee
Confidence            588987766 99999999 98765  35889753            5699999985 788987 99999984

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=95.30  E-value=0.018  Score=61.60  Aligned_cols=55  Identities=20%  Similarity=0.318  Sum_probs=43.8

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCee
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW  419 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~-----~~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDGeW  419 (441)
                      .|+|...++ |+.|.|.+ |+.+.     ..++|.+.            ..|+|.+.+. +.+|.+ |+|.|+|.|
T Consensus        30 g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~v~g~~   91 (718)
T 2vr5_A           30 GVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNK------------TGDIWHVFVPGLRPGQL-YAYRVYGPY   91 (718)
T ss_dssp             EEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEE------------SSSEEEEEEETCCTTCE-EEEEEECCE
T ss_pred             eEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccC------------CCCEEEEEeCCCCCCCE-EEEEEeeec
Confidence            688987666 99999999 87554     24788753            5799999985 789988 999999864

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=95.20  E-value=0.019  Score=60.21  Aligned_cols=61  Identities=20%  Similarity=0.203  Sum_probs=48.9

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCeeecCCCCCcc
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV  428 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDGeW~~DPd~PtV  428 (441)
                      .|+|+..++ ++.|.|.|.    ...++|.+.            ..|+|++.+.+.+|.+ |+|.|||....||-...+
T Consensus        35 ~~~f~vwap~a~~v~l~~~----~~~~~m~~~------------~~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~   96 (602)
T 2bhu_A           35 GTRFRLWTSTARTVAVRVN----GTEHVMTSL------------GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFL   96 (602)
T ss_dssp             CEEEEEECSSCSSEEEEET----TEEEECEEE------------ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCC
T ss_pred             eEEEEEECCCCCEEEEEEc----CCEEeCeeC------------CCcEEEEEEECCCCcE-EEEEECCeEecCCCcccc
Confidence            688886666 999999994    246889863            4689999999889986 999999977778866554

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=95.17  E-value=0.038  Score=58.29  Aligned_cols=73  Identities=22%  Similarity=0.324  Sum_probs=53.0

Q ss_pred             ceEEEEEEec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE-C
Q 013544          349 LEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D  416 (441)
Q Consensus       349 L~~VTFtW~~----~AksVeVaGSFN---nW~~~--I-pM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV-D  416 (441)
                      .+.|+|+...    .+..|+|+|+-.   +|++.  + +|...         .+.....|++++.||.| .+||||++ |
T Consensus       583 ~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~---------~~~~~~~W~~~v~lp~~~~~eyK~~~~~  653 (683)
T 3bmv_A          583 QICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQ---------VVYQYPTWYYDVSVPAGTTIQFKFIKKN  653 (683)
T ss_dssp             EEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCS---------SSSCTTSEEEEEEEETTCEEEEEEEEES
T ss_pred             eEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccc---------CCCCCCcEEEEEEeCCCCcEEEEEEEEc
Confidence            5678898876    379999999885   99864  5 67641         01256799999999998 79999997 3


Q ss_pred             C---eeecCCCCCcccC
Q 013544          417 G---QWKVDPQRESVTK  430 (441)
Q Consensus       417 G---eW~~DPd~PtVtD  430 (441)
                      +   .|...++.-....
T Consensus       654 ~~~~~WE~g~Nr~~~~~  670 (683)
T 3bmv_A          654 GNTITWEGGSNHTYTVP  670 (683)
T ss_dssp             SSCCEECCSSCEEEECC
T ss_pred             CCceEecCCCCeeEECC
Confidence            2   4666665544443

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=94.85  E-value=0.054  Score=57.23  Aligned_cols=74  Identities=20%  Similarity=0.280  Sum_probs=52.8

Q ss_pred             CceEEEEEEec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE-
Q 013544          348 GLEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-  415 (441)
Q Consensus       348 gL~~VTFtW~~----~AksVeVaGSFN---nW~~~--I-pM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV-  415 (441)
                      ..+.|+|+...    .+..|+|+|+-.   +|++.  + +|...         .+.....|++++.||.| .+||||++ 
T Consensus       585 ~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~---------~~~~~~~W~~~v~lp~~~~~eyK~~~~  655 (686)
T 1d3c_A          585 DQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQ---------VVYQYPNWYYDVSVPAGKTIEFKFLKK  655 (686)
T ss_dssp             SEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCS---------SSSCTTCEEEEEEEETTCEEEEEEEEE
T ss_pred             CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccc---------cCCCCCeEEEEEEeCCCCcEEEEEEEE
Confidence            34678888866    389999999885   99874  5 56541         01256799999999998 79999997 


Q ss_pred             C-C--eeecCCCCCcccC
Q 013544          416 D-G--QWKVDPQRESVTK  430 (441)
Q Consensus       416 D-G--eW~~DPd~PtVtD  430 (441)
                      | +  .|...++.-....
T Consensus       656 ~~~~~~WE~g~Nr~~~~~  673 (686)
T 1d3c_A          656 QGSTVTWEGGSNHTFTAP  673 (686)
T ss_dssp             ETTEEEECCSSCEEEECC
T ss_pred             cCCceEecCCCCeEEECC
Confidence            3 2  3666665544433

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=94.65  E-value=0.063  Score=55.96  Aligned_cols=71  Identities=20%  Similarity=0.288  Sum_probs=51.9

Q ss_pred             ceEEEEEEec----CCceEEEEeeeC---CCccc---cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE-C
Q 013544          349 LEVVEIQYSG----DGEIVEVAGSFN---GWHHR---IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D  416 (441)
Q Consensus       349 L~~VTFtW~~----~AksVeVaGSFN---nW~~~---IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV-D  416 (441)
                      .+.|+|....    .|+.|+|+|+-.   +|++.   ++|...           ..++.|++++.||.| .+||||+| |
T Consensus       419 ~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~-----------~~p~~W~~~v~lp~~~~~eYKyv~~~  487 (516)
T 1vem_A          419 PVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYD-----------SHSNDWRGNVVLPAERNIEFKAFIKS  487 (516)
T ss_dssp             EEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEE-----------TTTTEEEEEEEEETTCCEEEEEEEEC
T ss_pred             ccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccC-----------CCCCEEEEEEEECCCCcEEEEEEEEe
Confidence            5788998865    289999999884   89875   356431           234599999999998 59999998 3


Q ss_pred             --C---eeecCCCCCcccC
Q 013544          417 --G---QWKVDPQRESVTK  430 (441)
Q Consensus       417 --G---eW~~DPd~PtVtD  430 (441)
                        |   .|...++.-....
T Consensus       488 ~~g~v~~WE~g~NR~~~~p  506 (516)
T 1vem_A          488 KDGTVKSWQTIQQSWNPVP  506 (516)
T ss_dssp             TTSCEEEECSSCEEESSCC
T ss_pred             CCCCeeEEeCCCCEEEecC
Confidence              3   4777766554443

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=93.79  E-value=0.072  Score=55.09  Aligned_cols=59  Identities=14%  Similarity=0.057  Sum_probs=42.1

Q ss_pred             eEEEEE-EecCCceEEE-EeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEEC
Q 013544          350 EVVEIQ-YSGDGEIVEV-AGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD  416 (441)
Q Consensus       350 ~~VTFt-W~~~AksVeV-aGSFNnW~~----~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVD  416 (441)
                      ..+.|. |...++.|.| .|+|++|+.    .++|.+...        +...|+|++.+......+.|||.|.
T Consensus        23 ~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~--------~~~~~~w~~~i~~~~~~~~Y~f~i~   87 (585)
T 1wzl_A           23 LRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGS--------DERFDYFEALLECSTKRVKYVFLLT   87 (585)
T ss_dssp             EEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEE--------CSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeec--------CCCEEEEEEEEECCCCeEEEEEEEE
Confidence            444554 3345899999 899999964    578986410        1124579999988777789999885

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=93.67  E-value=0.071  Score=56.84  Aligned_cols=66  Identities=18%  Similarity=0.201  Sum_probs=48.7

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEEC--Cee--ecCC
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD--GQW--KVDP  423 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~~-~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVD--GeW--~~DP  423 (441)
                      .|+|+..++ |..|.|.+.|++|.. .++|.+.            ..|+|.+.+. +.+|. .|+|.|+  |.|  ..||
T Consensus       114 ~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~------------~~g~w~~~v~~~~~g~-~Y~f~v~~~g~~~~~~DP  180 (718)
T 2e8y_A          114 HTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRL------------EKGVYAVTVTGDLHGY-EYLFCICNNSEWMETVDQ  180 (718)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTSCCEEEECEEC------------GGGEEEEEEESCCTTC-EEEEEEEETTEEEEECCT
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCcceEEeCccC------------CCCEEEEEECCCCCCC-eEEEEEEeCCeEEEecCC
Confidence            688987776 999999999998864 4789864            4689999987 56773 4666665  764  5687


Q ss_pred             CCCccc
Q 013544          424 QRESVT  429 (441)
Q Consensus       424 d~PtVt  429 (441)
                      -...+.
T Consensus       181 ya~~~~  186 (718)
T 2e8y_A          181 YAKAVT  186 (718)
T ss_dssp             TCSSBC
T ss_pred             cccccc
Confidence            665443

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=93.14  E-value=0.077  Score=59.94  Aligned_cols=68  Identities=18%  Similarity=0.105  Sum_probs=50.7

Q ss_pred             eEEEEEEecC-CceEEEEe-eeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEEC------Ce-
Q 013544          350 EVVEIQYSGD-GEIVEVAG-SFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ-  418 (441)
Q Consensus       350 ~~VTFtW~~~-AksVeVaG-SFNnW~~-~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVD------Ge-  418 (441)
                      ..|+|...++ |..|.|.+ +|++|.. .++|.+.           ...|+|.+.+. +.+|.| |+|.|+      |. 
T Consensus       304 ~gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~-----------~~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~  371 (1083)
T 2fhf_A          304 SGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRD-----------SASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKV  371 (1083)
T ss_dssp             TEEEEEEECTTCSEEEEEEECTTCCEEEEEECEEC-----------TTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEE
T ss_pred             CeEEEEEECCCCCEEEEEEEcCCCCccceEECeEC-----------CCCCEEEEEECCCCCCCE-EEEEEEeecCCCCcc
Confidence            3588987776 99999999 8899974 4788753           25699999985 788976 888885      43 


Q ss_pred             ---eecCCCCCccc
Q 013544          419 ---WKVDPQRESVT  429 (441)
Q Consensus       419 ---W~~DPd~PtVt  429 (441)
                         ...||-...+.
T Consensus       372 ~~~~~~DPYa~~~~  385 (1083)
T 2fhf_A          372 EQYEVTDPYAHSLS  385 (1083)
T ss_dssp             EEEEECCTTCSCBC
T ss_pred             ccceecCCccceec
Confidence               46787665443

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=92.36  E-value=0.1  Score=54.05  Aligned_cols=60  Identities=15%  Similarity=0.172  Sum_probs=42.7

Q ss_pred             ceEEEEE-EecCCceEEE-EeeeCCCcc------ccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEEC
Q 013544          349 LEVVEIQ-YSGDGEIVEV-AGSFNGWHH------RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD  416 (441)
Q Consensus       349 L~~VTFt-W~~~AksVeV-aGSFNnW~~------~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVD  416 (441)
                      ..++.|+ |...++.|.| .|+|++|+.      .++|.+..+        +...|+|++.+......+.|+|.|.
T Consensus        22 ~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~--------~~~~~~w~~~v~~~~~~~~Y~f~i~   89 (588)
T 1j0h_A           22 TLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGS--------DELFDYWFAEVKPPYRRLRYGFVLY   89 (588)
T ss_dssp             CEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEE--------CSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred             EEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeec--------CCCeEEEEEEEECCCcEEEEEEEEE
Confidence            3556665 3445999999 799999964      578986410        1124579999987777788899885

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=91.76  E-value=0.092  Score=58.06  Aligned_cols=65  Identities=17%  Similarity=0.197  Sum_probs=48.9

Q ss_pred             EEEEEecC-CceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEcCCee-----EEEEEEECC--e-
Q 013544          352 VEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGT-----YEIKFIVDG--Q-  418 (441)
Q Consensus       352 VTFtW~~~-AksVeVaG-SFNnW~~---~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGr-----YEYKFIVDG--e-  418 (441)
                      |.|+..++ |..|+|.+ ++++|..   .++|.+.            ..|+|.+.+.+.||.     +.|+|.|++  . 
T Consensus       146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~  213 (877)
T 3faw_A          146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKN------------NKGVWQTILDTKLGIKNYTGYYYLYEIKRGKDK  213 (877)
T ss_dssp             EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEEC------------TTSEEEEEECGGGTCSCCTTCEEEEEEEETTEE
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCccceeeeccccC------------CCCEEEEEECCCCCCccCCCeEEEEEEeeCCce
Confidence            88997776 99999998 6778853   5789763            579999999777762     678888863  3 


Q ss_pred             -eecCCCCCcc
Q 013544          419 -WKVDPQRESV  428 (441)
Q Consensus       419 -W~~DPd~PtV  428 (441)
                       ...||-...+
T Consensus       214 ~~~~DPYA~~~  224 (877)
T 3faw_A          214 VKILDPYAKSL  224 (877)
T ss_dssp             EEECCTTCSCB
T ss_pred             eEecCccceec
Confidence             5668876543

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=91.39  E-value=0.28  Score=51.78  Aligned_cols=62  Identities=19%  Similarity=0.232  Sum_probs=47.3

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EcCCeeEEEEEEEC-CeeecCCCCCc
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVD-GQWKVDPQRES  427 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL-~LpPGrYEYKFIVD-GeW~~DPd~Pt  427 (441)
                      .|+|+..++ |+.|.|.+   +|. .++|.+.            ..|.|.+.+ .+.+|. .|||.|+ |..+.||-...
T Consensus        43 ~~~F~vwap~a~~v~l~~---~~~-~~~m~~~------------~~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~  105 (618)
T 3m07_A           43 VVRFRLWATGQQKVMLRL---AGK-DQEMQAN------------GDGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRA  105 (618)
T ss_dssp             EEEEEEECTTCSCEEEEE---TTE-EEECEEC------------STTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSC
T ss_pred             cEEEEEECCCCCEEEEEE---CCC-cccCeec------------CCEEEEEEeCCCCCCC-EEEEEEeCCeEecccccee
Confidence            588987776 89999998   353 4789864            568999988 478886 5899995 56888987655


Q ss_pred             cc
Q 013544          428 VT  429 (441)
Q Consensus       428 Vt  429 (441)
                      ..
T Consensus       106 ~~  107 (618)
T 3m07_A          106 QK  107 (618)
T ss_dssp             BS
T ss_pred             ee
Confidence            43

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=91.23  E-value=0.24  Score=54.75  Aligned_cols=63  Identities=16%  Similarity=0.243  Sum_probs=46.6

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc----cccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEE--CCe--ee
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWH----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV--DGQ--WK  420 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~----~~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIV--DGe--W~  420 (441)
                      .|+|+..++ |..|.|.+ |++|.    ..++|.+.            ..|+|.+.+. +.+|.+ |+|.|  +|.  ..
T Consensus       326 gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~g~~-Y~y~v~~~g~~~~~  391 (921)
T 2wan_A          326 ATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKS------------DNGTWKLQVSGNLENWY-YLYQVTVNGTTQTA  391 (921)
T ss_dssp             EEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEEC------------GGGEEEEEEESCCTTCE-EEEEEECSSCEEEE
T ss_pred             eEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeC------------CCCEEEEEEccCCCCCE-EEEEEEeCCeEEEe
Confidence            688987776 99999997 99994    35789864            4689999986 567753 66666  565  45


Q ss_pred             cCCCCCc
Q 013544          421 VDPQRES  427 (441)
Q Consensus       421 ~DPd~Pt  427 (441)
                      .||-...
T Consensus       392 ~DPya~~  398 (921)
T 2wan_A          392 VDPYARA  398 (921)
T ss_dssp             CCTTCSS
T ss_pred             cCCccee
Confidence            6776543

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=91.20  E-value=0.16  Score=53.83  Aligned_cols=92  Identities=16%  Similarity=-0.004  Sum_probs=55.0

Q ss_pred             HhhhhhhhhhhhhhhcccccccccchHHHHHHHHhcCCc------eEEEEEEecC-CceEEEEeeeCCCcccc--ccCCC
Q 013544          311 KLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGL------EVVEIQYSGD-GEIVEVAGSFNGWHHRI--KMDPL  381 (441)
Q Consensus       311 K~~lsvlq~K~~~~i~~A~~Ll~eKd~~LdaAe~aLsgL------~~VTFtW~~~-AksVeVaGSFNnW~~~I--pM~kd  381 (441)
                      |.+|.|.+.-+.-.+..|..+=  -...||+.-.--..+      ..|+|...++ |+.|.|.+-+++|....  .|.+ 
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~q--~~~~~d~~~~y~~plGa~~~~~g~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~-  169 (884)
T 4aio_A           93 KCQLVVASFGADGKHVDVTGLQ--LPGVLDDMFAYTGPLGAVFSEDSVSLHLWAPTAQGVSVCFFDGPAGPALETVQLK-  169 (884)
T ss_dssp             TSEEEEEEECTTSSEEEEEEEE--CHHHHHHHHCCCSCCEEEECSSEEEEEEECTTCSEEEEEEESTTTSCEEEEEECE-
T ss_pred             hcceEEEEECCCCCEeeccccc--cCcccccccccCCCccCEEECCEEEEEEECCCCCEEEEEEEeCCCCCeeeeeeec-
Confidence            3456665544444444443221  123456544321112      3589997776 99999999655665542  2322 


Q ss_pred             CCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECC
Q 013544          382 PSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG  417 (441)
Q Consensus       382 ~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDG  417 (441)
                                 ...|+|++.+. +.+|.| |+|.|+|
T Consensus       170 -----------~~~g~W~~~~~~~~~g~~-Y~y~v~~  194 (884)
T 4aio_A          170 -----------ESNGVWSVTGPREWENRY-YLYEVDV  194 (884)
T ss_dssp             -----------EETTEEEEEEEGGGTTCE-EEEEEEE
T ss_pred             -----------CCCCEEEEEECCCCCCCE-EEEEEeC
Confidence                       25799999996 678864 8888875

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=91.13  E-value=0.22  Score=53.13  Aligned_cols=64  Identities=17%  Similarity=0.285  Sum_probs=46.7

Q ss_pred             EEEEEEecC-CceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEc--CCe-----eEEEEEEEC--
Q 013544          351 VVEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWL--YPG-----TYEIKFIVD--  416 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaG-SFNnW~~---~IpM~kd~ss~~~~~~~tkesG~FsttL~L--pPG-----rYEYKFIVD--  416 (441)
                      .|+|...++ |+.|.|.+ ++++|..   .++|.+.            ..|+|.+.+.-  .+|     -+.|+|.|+  
T Consensus        25 gv~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~   92 (714)
T 2ya0_A           25 QVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG------------ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQ   92 (714)
T ss_dssp             EEEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC------------GGGEEEEEECTTCSSSCSCCTTCEEEEEEEET
T ss_pred             EEEEEEECCCCCEEEEEEEeCCCCCccceEEeCccC------------CCCEEEEEECCccCCCccccCCcEEEEEEEeC
Confidence            388987766 99999999 7888864   5789763            46999998863  134     267888886  


Q ss_pred             Ce--eecCCCCC
Q 013544          417 GQ--WKVDPQRE  426 (441)
Q Consensus       417 Ge--W~~DPd~P  426 (441)
                      |.  -..||-..
T Consensus        93 ~~~~~~~DPya~  104 (714)
T 2ya0_A           93 GKTVLALDPYAK  104 (714)
T ss_dssp             TEEEEECCTTCS
T ss_pred             CceEEecCCcee
Confidence            64  35788654

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=90.92  E-value=0.043  Score=56.06  Aligned_cols=70  Identities=20%  Similarity=0.411  Sum_probs=0.0

Q ss_pred             ceEEEEEE-ec---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE-C-
Q 013544          349 LEVVEIQY-SG---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D-  416 (441)
Q Consensus       349 L~~VTFtW-~~---~AksVeVaGSFN---nW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV-D-  416 (441)
                      .+.|+|+. ..   .++.|+|+|+-.   +|++.  ++|...           .....|++++.||+| .+||||+| | 
T Consensus       430 ~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~-----------~~~~~W~~~v~lp~~~~~eyKy~~~~~  498 (527)
T 1gcy_A          430 LVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDT-----------SGYPTWKGSIALPAGQNEEWKCLIRNE  498 (527)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccC-----------CCCCeEEEEEEeCCCCcEEEEEEEEeC
Confidence            35677776 32   389999999885   89873  678631           146789999999999 59999996 3 


Q ss_pred             -C-----eeecCCCCCccc
Q 013544          417 -G-----QWKVDPQRESVT  429 (441)
Q Consensus       417 -G-----eW~~DPd~PtVt  429 (441)
                       |     .|...|+.-...
T Consensus       499 ~~~~~~~~We~g~nr~~~~  517 (527)
T 1gcy_A          499 ANATQVRQWQGGANNSLTP  517 (527)
T ss_dssp             -------------------
T ss_pred             CCCcceeEecCCCCeeEEC
Confidence             3     377666655433

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=87.83  E-value=0.53  Score=52.00  Aligned_cols=51  Identities=22%  Similarity=0.419  Sum_probs=37.9

Q ss_pred             cCCceEEEEeee-------CCCccccc---cCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCeee
Q 013544          358 GDGEIVEVAGSF-------NGWHHRIK---MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK  420 (441)
Q Consensus       358 ~~AksVeVaGSF-------NnW~~~Ip---M~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDGeW~  420 (441)
                      ..+..+.+.|+|       .+|++.-.   |.+            ..+|.|+.+-.||+|.||||+.++|.|.
T Consensus       161 ~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~~~~------------~~~~~y~~~~~l~~g~y~~kv~~~~~w~  221 (921)
T 2wan_A          161 ANPVTAVLVGDLQQALGAANNWSPDDDHTLLKK------------INPNLYQLSGTLPAGTYQYKIALDHSWN  221 (921)
T ss_dssp             CCCCCEEEEETTSGGGTCSSSSCTTCGGGBCEE------------EETTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred             ccccccccccchhhhccccccCCCCCCcceeec------------cCCcceeeeeccCCcceeEEEeecCccc
Confidence            345678888876       46765421   321            1478999999999999999999998884

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=86.11  E-value=0.64  Score=52.01  Aligned_cols=63  Identities=17%  Similarity=0.299  Sum_probs=45.6

Q ss_pred             EEEEEecC-CceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEcC--Ce-----eEEEEEEEC--C
Q 013544          352 VEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PG-----TYEIKFIVD--G  417 (441)
Q Consensus       352 VTFtW~~~-AksVeVaG-SFNnW~~---~IpM~kd~ss~~~~~~~tkesG~FsttL~Lp--PG-----rYEYKFIVD--G  417 (441)
                      |+|...++ |..|.|.+ +|++|..   .++|.+.            ..|+|.+.+.-.  +|     -+.|+|.|+  |
T Consensus       333 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~~~  400 (1014)
T 2ya1_A          333 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG------------ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQG  400 (1014)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC------------GGGEEEEEECTTCSSCCSCCTTCEEEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCccceEEecccC------------CCCEEEEEEcccccCCccccCCcEEEEEEEeCC
Confidence            78987776 99999999 7888864   5789763            568999988631  23     256788885  5


Q ss_pred             e--eecCCCCC
Q 013544          418 Q--WKVDPQRE  426 (441)
Q Consensus       418 e--W~~DPd~P  426 (441)
                      .  ...||-..
T Consensus       401 ~~~~~~DPYa~  411 (1014)
T 2ya1_A          401 KTVLALDPYAK  411 (1014)
T ss_dssp             EEEEECCTTCS
T ss_pred             eEEEecCccce
Confidence            4  45788543

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=86.10  E-value=0.34  Score=50.59  Aligned_cols=60  Identities=10%  Similarity=0.115  Sum_probs=41.3

Q ss_pred             eEEEEEEe----cC-CceEEEEeeeCCCccccccCC--CCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECC
Q 013544          350 EVVEIQYS----GD-GEIVEVAGSFNGWHHRIKMDP--LPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDG  417 (441)
Q Consensus       350 ~~VTFtW~----~~-AksVeVaGSFNnW~~~IpM~k--d~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDG  417 (441)
                      ..|+|+..    ++ ++.|.|.+.|++=...++|.+  ...        +...|+|++.+........|+|.|+|
T Consensus        30 ~~v~f~v~~~~~ap~a~~V~l~~~~~~~~~~~~m~~~~~~~--------~~~~~~w~~~i~~~~~g~~Y~f~i~~   96 (637)
T 1ji1_A           30 QSVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDP--------TGTFDYWKGTIPASPSIKYYRFQIND   96 (637)
T ss_dssp             CCEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEECT--------TSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred             CEEEEEEEEecCcCCeeEEEEEEecCCCEEEEEeEEeeccc--------cCCeeEEEEEEECCCceEEEEEEEEE
Confidence            35778755    44 899999999875223478976  210        12357999999865556679999975

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=85.64  E-value=0.19  Score=52.07  Aligned_cols=59  Identities=19%  Similarity=0.240  Sum_probs=40.9

Q ss_pred             eEEEEE-EecCCceEEE-EeeeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEEC
Q 013544          350 EVVEIQ-YSGDGEIVEV-AGSFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD  416 (441)
Q Consensus       350 ~~VTFt-W~~~AksVeV-aGSFNnW~~---~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVD  416 (441)
                      ..+.|. |...+++|.| .|+|++|..   .++|.+...        +...|+|++.+......+.|||.|.
T Consensus        23 ~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~--------~~~~~~w~~~i~~~~~~~~Y~f~i~   86 (583)
T 1ea9_C           23 VHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLAT--------DELFDYWECEVTPPYRRVKYGFLLQ   86 (583)
T ss_dssp             EECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEE--------CSSCEEECCEECCTTSCEEECBCCE
T ss_pred             EEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEec--------cCCeEEEEEEEECCCceEEEEEEEE
Confidence            444454 3345899999 799999975   478986410        1124679999987767778888773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	441
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	3e-18
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	1e-15

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 77.3 bits (190), Expect = 3e-18
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 15/90 (16%)

Query: 352 VEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEI 411
              +++G G+ V ++GSFN W               +   +R    +  +L L  G ++ 
Sbjct: 4   TVFRWTGGGKEVYLSGSFNNWS--------------KLPMTRSQNNFVAILDLPEGEHQY 49

Query: 412 KFIVDGQWKVDPQRESVTKG-GICNNILRV 440
           KF VDGQW  DP    VT   G  NNI++V
Sbjct: 50  KFFVDGQWTHDPSEPIVTSQLGTVNNIIQV 79

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 69.7 bits (170), Expect = 1e-15
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 347 SGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP 406
           S +  VEI++   G  V V GSF  W   I + P   ++            +   L L P
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGS----------FHVKLRLLP 50

Query: 407 GTYEIKFIVDGQWKVDPQRESVTKG-GICNNILRV 440
           GT+  +FIVD + +V     + T   G   N + V
Sbjct: 51  GTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEV 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	441
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.93
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.91
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	98.27
d1m7xa1	110	1,4-alpha-glucan branching enzyme, N-terminal doma	98.19
d1kula_	108	Glucoamylase, granular starch-binding domain {Aspe	97.79
d1qhoa2	110	Cyclodextrin glycosyltransferase, C-terminal domai	97.78
d1cyga2	106	Cyclodextrin glycosyltransferase, C-terminal domai	97.68
d3bmva2	105	Cyclodextrin glycosyltransferase, C-terminal domai	97.64
d1eh9a1	90	Glycosyltrehalose trehalohydrolase, N-terminal dom	97.44
d1vema1	99	beta-amylase {Bacillus cereus [TaxId: 1396]}	96.99
d2fhfa1	115	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	95.34
d1bf2a1	162	Isoamylase, N-terminal domain N {Pseudomonas amylo	94.98

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.93  E-value=3.9e-26  Score=183.16  Aligned_cols=84  Identities=31%  Similarity=0.438  Sum_probs=76.1

Q ss_pred             CceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCeeecCCCCCc
Q 013544          348 GLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES  427 (441)
Q Consensus       348 gL~~VTFtW~~~AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDGeW~~DPd~Pt  427 (441)
                      .++||+|+|+++|++|+|+|+||+|++.++|.+..          ..+|.|.+++.|+||.|+|||+|||+|++||++|+
T Consensus         2 ~~vpv~f~w~~~g~~V~v~GsFn~W~~~~~~~~~~----------~~~g~~~~~l~l~~G~y~YKFiVDG~w~~d~~~p~   71 (87)
T d2qlvb1           2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDS----------DNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPT   71 (87)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECS----------SSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCE
T ss_pred             eEEEEEEEECCCCeEEEEEEEecCcCccccccccc----------CCCccEEEEEeCCCCCEEEEEEECCcEEcCCCCCe
Confidence            47899999999999999999999999887765432          35789999999999999999999999999999999


Q ss_pred             ccC-CCccceEEEeC
Q 013544          428 VTK-GGICNNILRVI  441 (441)
Q Consensus       428 VtD-~Gn~NNVL~V~  441 (441)
                      +.+ .|+.||+|.|+
T Consensus        72 ~~d~~G~~nnvi~V~   86 (87)
T d2qlvb1          72 ATDQMGNFVNYIEVR   86 (87)
T ss_dssp             EBCSSCCCEEEEEEC
T ss_pred             eECCCCCEeEEEEEE
Confidence            887 69999999985

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.91  E-value=4.6e-25  Score=177.86  Aligned_cols=78  Identities=36%  Similarity=0.621  Sum_probs=72.0

Q ss_pred             eEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCeeecCCCCCccc
Q 013544          350 EVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT  429 (441)
Q Consensus       350 ~~VTFtW~~~AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDGeW~~DPd~PtVt  429 (441)
                      +||+|+|+++|++|+|+|||++|++ .+|.+             .+|.|.+++.|+||.|+|||+|||+|++||+.|++.
T Consensus         2 ~P~~f~w~~~a~~V~v~Gsfn~W~~-~~~~~-------------~~g~~~~tl~L~~G~y~YKFiVDG~w~~d~~~~~~~   67 (87)
T d1z0na1           2 RPTVFRWTGGGKEVYLSGSFNNWSK-LPMTR-------------SQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVT   67 (87)
T ss_dssp             EEEEEEECSCCSCEEEEEGGGTTCC-EECEE-------------ETTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEE
T ss_pred             CCEEEEEcCCCEEEEEEEEeCCCCc-ccccc-------------CCCcEEEEEECCCceEEEEEEECCEEEeCCCCCeeE
Confidence            6999999999999999999999985 66753             579999999999999999999999999999999988


Q ss_pred             C-CCccceEEEeC
Q 013544          430 K-GGICNNILRVI  441 (441)
Q Consensus       430 D-~Gn~NNVL~V~  441 (441)
                      + .|+.||+|.|+
T Consensus        68 d~~G~~Nnvi~V~   80 (87)
T d1z0na1          68 SQLGTVNNIIQVK   80 (87)
T ss_dssp             CTTSCEEEEEEEC
T ss_pred             CCCCCEEEEEEEC
Confidence            7 79999999985

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.27  E-value=2.9e-07  Score=74.66  Aligned_cols=63  Identities=19%  Similarity=0.182  Sum_probs=52.4

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCeeecCCCCCcc
Q 013544          350 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV  428 (441)
Q Consensus       350 ~~VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDGeW~~DPd~PtV  428 (441)
                      ..|+|+..++ |++|.|.|.+.    .++|.+.            ..|.|.+++.+.+|.+ |+|.|||.|+.||-....
T Consensus        21 ~g~~FrvwAP~A~~V~l~~~~~----~~~m~~~------------~~G~w~~~~~~~~G~~-Y~y~vdg~~~~DPyar~~   83 (97)
T d2bhua1          21 AGTRFRLWTSTARTVAVRVNGT----EHVMTSL------------GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFL   83 (97)
T ss_dssp             CCEEEEEECSSCSSEEEEETTE----EEECEEE------------ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCC
T ss_pred             CeEEEEEECCCCCEeEEEeeCC----ccCCEEc------------cCEEEEEEcCCCCCCE-EEEEECCeEccCCchhcC
Confidence            3589998887 99999999654    3578874            6799999999999986 999999999999986554


Q ss_pred             c
Q 013544          429 T  429 (441)
Q Consensus       429 t  429 (441)
                      .
T Consensus        84 ~   84 (97)
T d2bhua1          84 P   84 (97)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=1.8e-06  Score=70.46  Aligned_cols=68  Identities=21%  Similarity=0.280  Sum_probs=51.1

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE---CCeee--cC
Q 013544          350 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV---DGQWK--VD  422 (441)
Q Consensus       350 ~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIV---DGeW~--~D  422 (441)
                      .-|+|+..++ |+.|+|.|+||+|... .+|.+.           ...|.|++.+.....-..|||.|   ||+|.  .|
T Consensus        20 ~Gv~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~-----------~~~G~W~~~i~~~~~G~~Y~y~v~~~~G~~~~~~D   88 (110)
T d1m7xa1          20 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLR-----------KESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSD   88 (110)
T ss_dssp             EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCC-----------TTTTEEEEEEETCCTTCEEEEEEECTTSCEEEECC
T ss_pred             ceEEEEEECCCCCEEEEEEECCCCCCceEEeEEe-----------cCCCcEEEEecCCCCCCEEEEEEEcCCCcEeEEcC
Confidence            4588986666 9999999999999754 578653           35789999998655555788877   78866  47


Q ss_pred             CCCCcc
Q 013544          423 PQRESV  428 (441)
Q Consensus       423 Pd~PtV  428 (441)
                      |-.-..
T Consensus        89 PYA~~~   94 (110)
T d1m7xa1          89 PYAFEA   94 (110)
T ss_dssp             TTCSSE
T ss_pred             hhhccc
Confidence            765543

>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Glucoamylase, granular starch-binding domain
species: Aspergillus niger [TaxId: 5061]

Probab=97.79  E-value=1.7e-05  Score=64.32  Aligned_cols=74  Identities=28%  Similarity=0.550  Sum_probs=54.3

Q ss_pred             CceEEEEEEecC---CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---
Q 013544          348 GLEVVEIQYSGD---GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---  415 (441)
Q Consensus       348 gL~~VTFtW~~~---AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---  415 (441)
                      ..+.|+|.....   |+.|+|+|+.   .+|++.  ++|....        .....+.|..++.|++| .+||||+|   
T Consensus         5 ~~v~V~F~v~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~--------~~~~~~~w~~~v~~~~~~~~eYKyvi~~~   76 (108)
T d1kula_           5 TAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADK--------YTSSDPLWYVTVTLPAGESFEYKFIRIES   76 (108)
T ss_dssp             TCCCEEEECCCCCCSSCEEEEECSSGGGTTTCTTTSEECBCTT--------CSSSSCCCBCEECCCSCCEECCEEEEECS
T ss_pred             CEEEEEEEEEeEcCCCCEEEEEeChHHhCCCCHHHCccceEcc--------ccCCCCCEEEEEEeCCCCeEEEEEEEECC
Confidence            456788888763   8999999997   499764  6786531        11246789999999999 69999998   


Q ss_pred             CCe--eecCCCCCccc
Q 013544          416 DGQ--WKVDPQRESVT  429 (441)
Q Consensus       416 DGe--W~~DPd~PtVt  429 (441)
                      ||.  |...++.-...
T Consensus        77 ~g~~~WE~g~NR~~~~   92 (108)
T d1kula_          77 DDSVEWESDPNREYTV   92 (108)
T ss_dssp             SSCEEECCSSCCCEEC
T ss_pred             CCCEEEccCCCEEEEe
Confidence            463  77666555443

>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=97.78  E-value=8.7e-05  Score=60.21  Aligned_cols=73  Identities=19%  Similarity=0.403  Sum_probs=49.9

Q ss_pred             eEEEEEEec-----CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---
Q 013544          350 EVVEIQYSG-----DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---  415 (441)
Q Consensus       350 ~~VTFtW~~-----~AksVeVaGSFN---nW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---  415 (441)
                      ..|+|++..     .|..|+|+|+..   +|++.  ++|....     ...-....+.|++++.||+| .+||||+|   
T Consensus         6 ~~V~f~v~~~~~T~~Gq~v~ivG~~~~LG~W~~~~a~~l~~~~-----~~~~~~~~~~W~~~v~lp~~~~~eYKyvi~~~   80 (110)
T d1qhoa2           6 TSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQ-----GPLLAPNYPDWFYVFSVPAGKTIQFKFFIKRA   80 (110)
T ss_dssp             EEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCB-----CCCBCTTTTSEEEEEEEETTCEEEEEEEEECT
T ss_pred             eEEEEEEeCcccCCCCCEEEEEeCcHHHCCCChhhcccccccc-----CccccccCCeEEEEEEECCCCEEEEEEEEEcC
Confidence            578888764     379999999974   89875  5676421     00011245689999999999 69999986   


Q ss_pred             CCe--eecCCCCCc
Q 013544          416 DGQ--WKVDPQRES  427 (441)
Q Consensus       416 DGe--W~~DPd~Pt  427 (441)
                      ||.  |--.|+.-.
T Consensus        81 ~g~~~WE~g~NR~~   94 (110)
T d1qhoa2          81 DGTIQWENGSNHVA   94 (110)
T ss_dssp             TSCEEECCSSCEEE
T ss_pred             CCCEEEcCCCCEEE
Confidence            453  655554433

>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.68  E-value=8.5e-05  Score=59.91  Aligned_cols=73  Identities=19%  Similarity=0.280  Sum_probs=53.2

Q ss_pred             CceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE--
Q 013544          348 GLEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--  415 (441)
Q Consensus       348 gL~~VTFtW~~----~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV--  415 (441)
                      ...+|+|....    .|..|+|+|+.   .+|++.  ++|.....        +...+.|.+++.+|.| .++|||+|  
T Consensus         4 ~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~--------~~~~~~w~~~v~~~~~~~~eYKyvi~~   75 (106)
T d1cyga2           4 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQV--------VYSYPTWYIDVSVPEGKTIEFKFIKKD   75 (106)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSS--------SSCTTCEEEEEEEESSCEEEEEEEEEC
T ss_pred             CEEEEEEEEcceEcCCCCEEEEEcCHHHHCCCCHHHCccceeccC--------cCCCCeEEEEEEeCCCCeEEEEEEEEc
Confidence            34789999853    48999999996   699754  67875321        1235689999999999 79999998  


Q ss_pred             -CCe--eecCCCCCcc
Q 013544          416 -DGQ--WKVDPQRESV  428 (441)
Q Consensus       416 -DGe--W~~DPd~PtV  428 (441)
                       ||.  |-..|+.-.+
T Consensus        76 ~~g~~~WE~g~NR~~~   91 (106)
T d1cyga2          76 SQGNVTWESGSNHVYT   91 (106)
T ss_dssp             TTSCEEECCSSCEEEE
T ss_pred             CCCCEEEcCCCCEEEE
Confidence             564  6656655443

>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Thermoanaerobacterium [TaxId: 28895]

Probab=97.64  E-value=7.6e-05  Score=60.31  Aligned_cols=72  Identities=19%  Similarity=0.251  Sum_probs=52.0

Q ss_pred             ceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEEC--
Q 013544          349 LEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVD--  416 (441)
Q Consensus       349 L~~VTFtW~~----~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIVD--  416 (441)
                      ...|+|+...    .|..|+|+|+.   .+|++.  ++|....        +....+.|++++.||+| .+||||++.  
T Consensus         5 ~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKyv~~~~   76 (105)
T d3bmva2           5 QICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQ--------VVYQYPTWYYDVSVPAGTTIQFKFIKKNG   76 (105)
T ss_dssp             EEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCS--------SSSCTTSEEEEEEEETTCEEEEEEEEESS
T ss_pred             EEEEEEEEcccccCCCCEEEEEeCcHHHCCCCHHHCccccccc--------ccCCCCeEEEEEEECCCCeEEEEEEEEcC
Confidence            3678998864    38999999996   499754  6787531        11245789999999999 599999983  


Q ss_pred             C--eeecCCCCCcc
Q 013544          417 G--QWKVDPQRESV  428 (441)
Q Consensus       417 G--eW~~DPd~PtV  428 (441)
                      |  .|-..|+.-..
T Consensus        77 ~~~~WE~g~NR~~~   90 (105)
T d3bmva2          77 NTITWEGGSNHTYT   90 (105)
T ss_dssp             SCCEECCSSCEEEE
T ss_pred             CeEEEcCCCCEEEE
Confidence            3  27666655443

>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=97.44  E-value=2.1e-05  Score=62.42  Aligned_cols=61  Identities=15%  Similarity=0.110  Sum_probs=48.8

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EcCCeeEEEEEEECCe-eecCCCCCc
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQ-WKVDPQRES  427 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL-~LpPGrYEYKFIVDGe-W~~DPd~Pt  427 (441)
                      .|+|+..++ |+.|+|.|.+.+|   ++|.+.            ..|+|++++ .+.+| +.|+|.|||. ++.||-...
T Consensus        10 gv~FrvwAP~A~~V~l~~~~~~~---~~m~~~------------~~G~W~~~v~~~~~G-~~Y~y~v~~~~~~~DP~s~~   73 (90)
T d1eh9a1          10 EVIFTLWAPYQKSVKLKVLEKGL---YEMERD------------EKGYFTITLNNVKVR-DRYKYVLDDASEIPDPASRY   73 (90)
T ss_dssp             CEECCEECTTCSCCBCCCSSSCC---CCCCCC------------TTSEECCEESSCCSC-CEECEECTTSCEECCTTCSC
T ss_pred             CEEEEEECCCCCEEEEEeecCCc---ccceeC------------CCCEEEEEeCCCCCC-ceeEEEEeCCcCcCCccHhc
Confidence            489998887 9999999875444   688874            689999999 48899 5699999875 678886654

>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=96.99  E-value=0.00062  Score=54.45  Aligned_cols=71  Identities=20%  Similarity=0.268  Sum_probs=47.8

Q ss_pred             eEEEEEEec----CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---C
Q 013544          350 EVVEIQYSG----DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D  416 (441)
Q Consensus       350 ~~VTFtW~~----~AksVeVaGSFN---nW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---D  416 (441)
                      ..++|...+    .|+.|+|+|+..   +|++.  +.|...          ....+.|++.+.||+| .+||||+|   |
T Consensus         3 v~~~~~v~~~~T~~Gq~v~vvGs~~eLG~W~~~ka~~l~~~----------~~~~~~W~~~v~lp~~~~~eYKyvi~~~~   72 (99)
T d1vema1           3 VMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYY----------DSHSNDWRGNVVLPAERNIEFKAFIKSKD   72 (99)
T ss_dssp             EEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEE----------ETTTTEEEEEEEEETTCCEEEEEEEECTT
T ss_pred             eeEEEEEeeeEcCCCCEEEEEeCcHHHCCCChhhheeeeec----------cCCCCCEEEEEEEcCCCcEEEEEEEEeCC
Confidence            345666654    389999999986   99864  222111          1245689999999999 69999998   5


Q ss_pred             Ce---eecCCCCCcccC
Q 013544          417 GQ---WKVDPQRESVTK  430 (441)
Q Consensus       417 Ge---W~~DPd~PtVtD  430 (441)
                      |.   |...++.-....
T Consensus        73 g~~~~WE~g~Nr~~~~p   89 (99)
T d1vema1          73 GTVKSWQTIQQSWNPVP   89 (99)
T ss_dssp             SCEEEECSSCEEESSCC
T ss_pred             CCEEEecCCCCEEEECC
Confidence            63   665554443333

>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.34  E-value=0.01  Score=47.76  Aligned_cols=68  Identities=16%  Similarity=0.051  Sum_probs=44.8

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCe--------
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ--------  418 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDGe--------  418 (441)
                      .|.|+..++ |+.|.|.--..+|...  ..|..+           ...|+|++.+. +.+|.+ |+|.|+|.        
T Consensus        18 g~~F~lwAP~A~~V~L~l~~~~~~~~~~~~~~~~-----------~~~GvW~~~i~~~~~G~~-Y~y~v~~~~~~~~~~~   85 (115)
T d2fhfa1          18 GVTFRVWAPTAQQVELVIYSADKKVIASHPMTRD-----------SASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVE   85 (115)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTCCEEEEEECEEC-----------TTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEE
T ss_pred             cEEEEEECCCCCEEEEEEECCCCCccceeeeeEc-----------CCCCEEEEEECCCCCCCE-EEEEEEcccccccCCc
Confidence            588998887 9999998443333221  234322           25799999995 788976 88888754        


Q ss_pred             --eecCCCCCcccC
Q 013544          419 --WKVDPQRESVTK  430 (441)
Q Consensus       419 --W~~DPd~PtVtD  430 (441)
                        ...||-..-+..
T Consensus        86 ~~~~~DPYA~a~~~   99 (115)
T d2fhfa1          86 QYEVTDPYAHSLST   99 (115)
T ss_dssp             EEEECCTTCSCBCG
T ss_pred             ceEecceeeEEEcc
Confidence              345776655443

>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Isoamylase, N-terminal domain N
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=94.98  E-value=0.016  Score=49.06  Aligned_cols=57  Identities=11%  Similarity=0.143  Sum_probs=43.2

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEE--------cCCeeEEEEEEECC
Q 013544          351 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW--------LYPGTYEIKFIVDG  417 (441)
Q Consensus       351 ~VTFtW~~~-AksVeVaGSFNnW~~----~IpM~kd~ss~~~~~~~tkesG~FsttL~--------LpPGrYEYKFIVDG  417 (441)
                      .|+|...++ |+.|.|.--..+|..    .++|.+            ...|+|.+.+.        +.+|.| |.|.|||
T Consensus        17 ~v~F~vwAp~A~~V~L~ly~~~~~~~~~~~~~l~~------------~~~gvW~~~v~~~~~~~~g~~~G~~-Y~yrv~G   83 (162)
T d1bf2a1          17 NITFRVYSSQATRIVLYLYSAGYGVQESATYTLSP------------AGSGVWAVTVPVSSIKAAGITGAVY-YGYRAWG   83 (162)
T ss_dssp             EEEEEEECSSCSEEEEEEESSSSSCCCSEEEECEE------------CSTTEEEEEEEHHHHHHTTCCSCCE-EEEEEEB
T ss_pred             eEEEEEECCCCCEEEEEEEcCCCCCcceeEEEccc------------ccccEEEEEecccccccccCCCCcE-EEEEEcc
Confidence            478987665 999999986667753    255664            26799999985        778865 8899999


Q ss_pred             eee
Q 013544          418 QWK  420 (441)
Q Consensus       418 eW~  420 (441)
                      .|.
T Consensus        84 p~~   86 (162)
T d1bf2a1          84 PNW   86 (162)
T ss_dssp             TTB
T ss_pred             ccC
Confidence            753