Citrus Sinensis ID: 013547
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 441 | ||||||
| 224139262 | 447 | predicted protein [Populus trichocarpa] | 0.988 | 0.975 | 0.778 | 0.0 | |
| 449466592 | 445 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 0.982 | 0.773 | 0.0 | |
| 255571457 | 467 | conserved hypothetical protein [Ricinus | 0.990 | 0.935 | 0.752 | 0.0 | |
| 297735616 | 444 | unnamed protein product [Vitis vinifera] | 0.988 | 0.981 | 0.783 | 0.0 | |
| 359481206 | 445 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.979 | 0.783 | 0.0 | |
| 449522141 | 445 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.990 | 0.982 | 0.771 | 0.0 | |
| 356495049 | 447 | PREDICTED: uncharacterized protein LOC10 | 0.938 | 0.926 | 0.776 | 0.0 | |
| 356506559 | 464 | PREDICTED: uncharacterized protein LOC10 | 0.938 | 0.892 | 0.756 | 0.0 | |
| 357468535 | 481 | hypothetical protein MTR_4g014430 [Medic | 0.995 | 0.912 | 0.681 | 0.0 | |
| 334187361 | 457 | protein trichome birefringence-like 35 [ | 0.993 | 0.958 | 0.684 | 0.0 |
| >gi|224139262|ref|XP_002323026.1| predicted protein [Populus trichocarpa] gi|222867656|gb|EEF04787.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/446 (77%), Positives = 387/446 (86%), Gaps = 10/446 (2%)
Query: 5 QRCNRKRTHSPLIALFFLVFIVCSILYNELSIQRIH------QDSHHDHQEAPVRYIQPN 58
QR +RK++H PL+A FL IVCSILYNE SIQ++H Q +H V Y++PN
Sbjct: 3 QRWHRKKSHFPLVAFIFLGIIVCSILYNESSIQQVHEEDPSNQGPNHQQHATTVTYVKPN 62
Query: 59 LFDRKS---EVLDRFSKCNATREYSGSKIGWADPRVKSGRRRVGSERCDVFSGKWVFDNA 115
L + +LDRFS CN+T EYSG +I W D +V+ GRR+ E CDVF+GKWVFD
Sbjct: 63 LGTHSNFAPVLLDRFSTCNSTSEYSGKRIRWGDSKVEKGRRK-SLESCDVFAGKWVFDRE 121
Query: 116 SYPLYNESQCPYMSDQLACHKHGRSDVRYQYWRWQPHNCNLKRWNATEMWEKLRGKRLMF 175
SYPLYNES CPYMSDQLACHKHGRSD+ YQ+WRWQPH+CNLKRWN TEMWEKLRGKRLMF
Sbjct: 122 SYPLYNESDCPYMSDQLACHKHGRSDLGYQHWRWQPHDCNLKRWNVTEMWEKLRGKRLMF 181
Query: 176 VGDSLNRGQWISMLCLLQSVIPENKRSITPNAQLTIFRAEEYNATVEFLWAPLLVESNSD 235
VGDSLNRGQWISM+CLLQSVIP +KRS++PNA LTIFRAEEYNAT+EFLWAPLLV+SNSD
Sbjct: 182 VGDSLNRGQWISMVCLLQSVIPADKRSMSPNAPLTIFRAEEYNATIEFLWAPLLVDSNSD 241
Query: 236 DPVNHRLDERIICPDSVLKHSSQWEQADILVFNSYLWWRQGPVKLLWSSEENGVCEELDG 295
DPVNHRLDERI+ PDSVLKHSS+WE ADILVFNSYLWWRQGPVKLLWS+EENG CEELDG
Sbjct: 242 DPVNHRLDERIMRPDSVLKHSSKWEHADILVFNSYLWWRQGPVKLLWSAEENGACEELDG 301
Query: 296 LGAMELAMSAWADWVASKLNPLKKRVFFVTMSPTHLWSREWQPGSEGNCYNEKIPIDLEG 355
LGAMELAM AWADWVASK++P KKRVFFVTMSPTHLWSREW+PGS GNCY+EK+PID EG
Sbjct: 302 LGAMELAMGAWADWVASKVDPQKKRVFFVTMSPTHLWSREWEPGSNGNCYSEKMPIDWEG 361
Query: 356 YWGSGSDLPTMRMLDKVLSKLGSKVTVLNITQLSEYRKDGHPSIYRKFWETLKPQQLSNP 415
YWGSGSD+PTMRM++KVL +LGSKV+VLNITQLSEYRKDGHPSIYRKFWETL P+QLSNP
Sbjct: 362 YWGSGSDMPTMRMVEKVLGRLGSKVSVLNITQLSEYRKDGHPSIYRKFWETLSPEQLSNP 421
Query: 416 PSYSDCIHWCLPGVPDVWNELLFHFL 441
SYSDCIHWCLPGVPDVWNELLFH L
Sbjct: 422 KSYSDCIHWCLPGVPDVWNELLFHLL 447
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449466592|ref|XP_004151010.1| PREDICTED: uncharacterized protein LOC101214109 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|255571457|ref|XP_002526676.1| conserved hypothetical protein [Ricinus communis] gi|223533976|gb|EEF35698.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297735616|emb|CBI18110.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359481206|ref|XP_002264310.2| PREDICTED: uncharacterized protein LOC100246524 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449522141|ref|XP_004168086.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101214109 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356495049|ref|XP_003516393.1| PREDICTED: uncharacterized protein LOC100789791 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356506559|ref|XP_003522047.1| PREDICTED: uncharacterized protein LOC100789158 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357468535|ref|XP_003604552.1| hypothetical protein MTR_4g014430 [Medicago truncatula] gi|355505607|gb|AES86749.1| hypothetical protein MTR_4g014430 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|334187361|ref|NP_001190201.1| protein trichome birefringence-like 35 [Arabidopsis thaliana] gi|332002985|gb|AED90368.1| protein trichome birefringence-like 35 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 441 | ||||||
| TAIR|locus:2057145 | 410 | TBL34 "AT2G38320" [Arabidopsis | 0.775 | 0.834 | 0.54 | 5.1e-106 | |
| TAIR|locus:2063125 | 425 | TBL33 "AT2G40320" [Arabidopsis | 0.757 | 0.785 | 0.504 | 6e-99 | |
| TAIR|locus:2082078 | 487 | ESK1 "ESKIMO 1" [Arabidopsis t | 0.766 | 0.694 | 0.472 | 1.1e-91 | |
| TAIR|locus:2065069 | 424 | TBL28 "TRICHOME BIREFRINGENCE- | 0.770 | 0.801 | 0.466 | 3e-89 | |
| TAIR|locus:2179172 | 434 | TBL3 "TRICHOME BIREFRINGENCE-L | 0.773 | 0.785 | 0.463 | 2.3e-87 | |
| TAIR|locus:2080280 | 379 | TBL36 "AT3G54260" [Arabidopsis | 0.757 | 0.881 | 0.4 | 5.1e-67 | |
| TAIR|locus:2096094 | 475 | TBL6 "AT3G62390" [Arabidopsis | 0.755 | 0.701 | 0.393 | 2.6e-63 | |
| TAIR|locus:2036631 | 541 | TBL2 "AT1G60790" [Arabidopsis | 0.770 | 0.628 | 0.380 | 4.8e-62 | |
| TAIR|locus:2155874 | 457 | TBL4 "AT5G49340" [Arabidopsis | 0.770 | 0.743 | 0.371 | 7.1e-61 | |
| TAIR|locus:2088659 | 556 | TBL1 "AT3G12060" [Arabidopsis | 0.773 | 0.613 | 0.388 | 1.5e-60 |
| TAIR|locus:2057145 TBL34 "AT2G38320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
Identities = 189/350 (54%), Positives = 248/350 (70%)
Query: 99 GSERCDVFSGKWVFDNASYPLYNESQCPYMSDQLACHKHGRSDVRYQYWRWQPHNCNLKR 158
G E C++F GKWVFDN SYPLY E C +MSDQLAC K GR D+ Y++WRWQPH C+L R
Sbjct: 56 GRE-CNLFEGKWVFDNVSYPLYKEEDCKFMSDQLACEKFGRKDLSYKFWRWQPHTCDLPR 114
Query: 159 WNATEMWEKLRGKRLMFVGDSLNRGQWISMLCLLQSVIPENKRSITPN--AQLTIFRAEE 216
+N T++ E+LR KR+++VGDSLNRGQW+SM+C++ SVI K N + L F+A E
Sbjct: 115 FNGTKLLERLRNKRMVYVGDSLNRGQWVSMVCMVSSVITNPKAMYMHNNGSNLITFKALE 174
Query: 217 YNATVEFLWAPLLVESNSDDPVNHRLDERIICPDSVLKHSSQWEQADILVFNSYLWWRQG 276
YNAT+++ WAPLLVESNSDDP NHR +RI+ S+ KH+ W +DI+VFNSYLWWR
Sbjct: 175 YNATIDYYWAPLLVESNSDDPTNHRFPDRIVRIQSIEKHARHWTNSDIIVFNSYLWWRMP 234
Query: 277 PVKLLWSSEE--NGVCEELDGLGAMELAMSAWADWVASKLNPLKKRVFFVTMSPTHLWSR 334
+K LW S E +G+ +E++ + E+A+ + W+ +NP ++FF++MSPTH +
Sbjct: 235 HIKSLWGSFEKLDGIYKEVEMVRVYEMALQTLSQWLEVHVNPNITKLFFMSMSPTHERAE 294
Query: 335 EWQPGSEGNCYNEKIPIDLEGYWGSGSDLPTMRMLDKVLSKL---GSKVTVLNITQLSEY 391
EW NCY E ID EGY G GSD MR+L+ VL L G + ++NITQLSEY
Sbjct: 295 EWGGILNQNCYGEASLIDKEGYTGRGSDPKMMRVLENVLDGLKNRGLNMQMINITQLSEY 354
Query: 392 RKDGHPSIYRKFWETLKPQQLSNPPSYSDCIHWCLPGVPDVWNELLFHFL 441
RK+GHPSIYRK W T+K ++SNP S +DCIHWCLPGVPDVWNELL+ ++
Sbjct: 355 RKEGHPSIYRKQWGTVKENEISNPSSNADCIHWCLPGVPDVWNELLYAYI 404
|
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| TAIR|locus:2063125 TBL33 "AT2G40320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2082078 ESK1 "ESKIMO 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2065069 TBL28 "TRICHOME BIREFRINGENCE-LIKE 28" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2179172 TBL3 "TRICHOME BIREFRINGENCE-LIKE 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2080280 TBL36 "AT3G54260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2096094 TBL6 "AT3G62390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2036631 TBL2 "AT1G60790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2155874 TBL4 "AT5G49340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2088659 TBL1 "AT3G12060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| estExt_fgenesh4_pg.C_LG_XVI1147 | hypothetical protein (447 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 441 | |||
| pfam13839 | 270 | pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera | 1e-100 | |
| PLN02629 | 387 | PLN02629, PLN02629, powdery mildew resistance 5 | 2e-85 | |
| pfam14416 | 55 | pfam14416, PMR5N, PMR5 N terminal Domain | 7e-24 |
| >gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
Score = 298 bits (766), Expect = e-100
Identities = 124/289 (42%), Positives = 168/289 (58%), Gaps = 22/289 (7%)
Query: 156 LKRWNATEMWEKLRGKRLMFVGDSLNRGQWISMLCLLQSVIPENKRSITPNAQLTIFRAE 215
L R++A + E+LRGKR++FVGDSL+R QW S++CLL V P +++ + +L FR +
Sbjct: 1 LPRFDAQQFLERLRGKRVVFVGDSLSRNQWESLVCLLSQVEPPKGKTLERDGRLFRFRFK 60
Query: 216 EYNATVEFLWAPLLVESNSDDPVNHRLDERIICPDSV-LKHSSQWEQADILVFNSYLWWR 274
+YN T+EF W+P LVES+ N +R++ DS+ K S W AD+LVFNS WW
Sbjct: 61 DYNVTIEFYWSPFLVESD-----NAEEGKRVLKLDSIDEKWSKLWPGADVLVFNSGHWWL 115
Query: 275 QGPVKLLWSSEENGVCEELDGLGAMELAMSAWADWVASKLNPLKKRVFFVTMSPTHLWSR 334
V + W + +E+ L A A+ WA WV L P K RVFF T SP H
Sbjct: 116 HRKVYIGWDYCQKSNYKEMGFLDAYRKALETWAKWVDVNLPPSKTRVFFRTFSPVHFEGG 175
Query: 335 EWQPGSEGNCYNEKIPIDLEGYWGSGSDLPTMRMLDKVLSK--LGSKVTVLNITQLSEYR 392
EW G G+CY E P+ G G + ++++VLS+ + + V +L+IT LS+YR
Sbjct: 176 EWNTG--GSCY-ETEPL--LGSEYKGLTPEMIDIVNEVLSRAAMKTPVKLLDITLLSQYR 230
Query: 393 KDGHPSIYRKFWETLKPQQLSNPPSYSDCIHWCLPGVPDVWNELLFHFL 441
KDGHPS+YRK K Q DC+HWCLPGVPD WNELL L
Sbjct: 231 KDGHPSVYRKPGPPKKEQ---------DCLHWCLPGVPDTWNELLLALL 270
|
The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270 |
| >gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 | Back alignment and domain information |
|---|
| >gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 441 | |||
| PLN02629 | 387 | powdery mildew resistance 5 | 100.0 | |
| PF13839 | 263 | PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f | 100.0 | |
| PF14416 | 55 | PMR5N: PMR5 N terminal Domain | 99.91 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 98.25 |
| >PLN02629 powdery mildew resistance 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-113 Score=873.00 Aligned_cols=333 Identities=40% Similarity=0.837 Sum_probs=300.9
Q ss_pred CCCCCCcccccCccccCCCCCCCcCCCCCC-CCcCCccccCCCCCCcccceeeeecCCCCCCCCCHHHHHHHHcCCcEEE
Q 013547 97 RVGSERCDVFSGKWVFDNASYPLYNESQCP-YMSDQLACHKHGRSDVRYQYWRWQPHNCNLKRWNATEMWEKLRGKRLMF 175 (441)
Q Consensus 97 ~~~~~~Cdl~~G~WV~d~~~~PlY~~~~Cp-~i~~~~~C~~nGRpD~~yl~WrWqP~~C~LprFda~~fLe~LRgKri~F 175 (441)
..+.++||+|+|+||+|+ ++|+|++++|| ||++++||++|||||++|++|||||++|+||||||.+||++||||+|||
T Consensus 47 ~~~~~~CD~f~G~WV~D~-s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~F 125 (387)
T PLN02629 47 QANQSTCALFVGTWVRDD-SYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMF 125 (387)
T ss_pred CCCccccCCCCCeEecCC-CCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEE
Confidence 455788999999999995 78999999999 9999999999999999999999999999999999999999999999999
Q ss_pred EecchhHHHHHHHHHhhccccCCCccccccCCceEEEEEeecCeEEEEEEcccccccCCCCCCCCCcccceecccccccc
Q 013547 176 VGDSLNRGQWISMLCLLQSVIPENKRSITPNAQLTIFRAEEYNATVEFLWAPLLVESNSDDPVNHRLDERIICPDSVLKH 255 (441)
Q Consensus 176 VGDSl~Rnq~eSLlCLL~~~~p~~~~~~~~~~~~~~~~f~~~NvTV~f~wsPfLV~~~~~~~~~~~~~~~~l~lD~id~~ 255 (441)
|||||+|||||||+|||++++|...+.+..++++.+|+|++||+||+|||+||||+.+.+. ..+++++|+++++
T Consensus 126 VGDSL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~~------~~~~l~LD~id~~ 199 (387)
T PLN02629 126 VGDSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVSISFYKAPYLVDIDAVQ------GKRVLKLEEISGN 199 (387)
T ss_pred eccccchhHHHHHHHHhhccCCCCceeeecCCceEEEEeccCCEEEEEEecceEEeeecCC------CceeEEecCcchh
Confidence 9999999999999999999998765555566788999999999999999999999976432 1347999999988
Q ss_pred ccccCCccEEEEecceecccCCccccccccccCc--cccCCHHHHHHHHHHHHHHHHHhhcCCCcceEEEeeCCCCCCCC
Q 013547 256 SSQWEQADILVFNSYLWWRQGPVKLLWSSEENGV--CEELDGLGAMELAMSAWADWVASKLNPLKKRVFFVTMSPTHLWS 333 (441)
Q Consensus 256 ~~~w~~~DVLV~ntG~Ww~~~~~~~~~~~~~~~~--~~~~~~~~Ayr~al~t~~~~v~~~~~~~kt~VffRT~SP~Hf~~ 333 (441)
++.|.++|||||||||||+++.....++++++|+ +++|++.+||++||+||++||++++++.+|+|||||+||+||+|
T Consensus 200 a~~w~~~DvlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~Hfe~ 279 (387)
T PLN02629 200 ANAWRDADVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYNP 279 (387)
T ss_pred hhhhccCCEEEEeCccccCCCCeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCcccccC
Confidence 9999999999999999999988766777887776 78999999999999999999999998899999999999999999
Q ss_pred CCCCCC---CCCCCCCCCccCCCCCcCCCCCChhhHHHHHHHHHhcCCceEEeeccccccccccCCCCcccccccccCcc
Q 013547 334 REWQPG---SEGNCYNEKIPIDLEGYWGSGSDLPTMRMLDKVLSKLGSKVTVLNITQLSEYRKDGHPSIYRKFWETLKPQ 410 (441)
Q Consensus 334 g~W~~~---~gg~C~~~t~P~~~~~~~~~~~d~~~~~vv~~~~~~~~~~v~lLDIT~ls~~R~DgHps~y~~~~~~~~~~ 410 (441)
|+||++ .+|+|+++|+|+.++++. +....+++++++++++++.+|++||||+||++|||||||+|+ ++++++
T Consensus 280 g~Wn~gg~~~~~~C~~et~P~~~~~~~--~~~~~~~~~ve~v~~~~~~~v~lLDIT~ls~lR~DgHPs~Y~---~~~~~~ 354 (387)
T PLN02629 280 SEWSAGASTTTKNCYGETTPMSGMTYP--GAYPDQMRVVDEVIRGMHNPAYLLDITLLSELRKDGHPSIYS---GDLSPS 354 (387)
T ss_pred CCcCCCCCCCCCCCccCCccCcCcccc--CcchHHHHHHHHHHHhcCCceEEEechhhhhcCCCCCccccc---CCCchh
Confidence 999983 236799999999877664 345566779999999999999999999999999999999997 345566
Q ss_pred cCCCCCCCCCcccccCCCcchHHHHHHHhhC
Q 013547 411 QLSNPPSYSDCIHWCLPGVPDVWNELLFHFL 441 (441)
Q Consensus 411 ~~~~~~~~~DClHWCLPGv~DtWNelL~~~L 441 (441)
++++|..++||+||||||||||||||||++|
T Consensus 355 ~~~~p~~~~DC~HWCLPGvpDTWNelL~a~L 385 (387)
T PLN02629 355 QRANPDRSADCSHWCLPGLPDTWNQLFYTAL 385 (387)
T ss_pred hccCCCCCCCcccccCCCCCccHHHHHHHHH
Confidence 7777888899999999999999999999986
|
|
| >PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
| >PF14416 PMR5N: PMR5 N terminal Domain | Back alignment and domain information |
|---|
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 441 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-08 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 1e-08
Identities = 70/516 (13%), Positives = 137/516 (26%), Gaps = 159/516 (30%)
Query: 44 HHDHQEAPVRYIQPNLFDRKSEVLDRFSK---CNATREYSGSKIGWAD-------PRVKS 93
HH H + Q D S D F C ++ S + + S
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 94 GRRRV-------GSERCDVFSGKWVFDNASYPLYNESQCPYMSDQLACHKHGRSD--VRY 144
G R+ E F + + N Y ++ + + S Y
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRIN-----Y-----KFLMSPIKTEQRQPSMMTRMY 112
Query: 145 QYWRWQPHNCN--LKRWNAT--EMWEKLRGKRLMFVGDSLNRGQWIS---ML-----CLL 192
R + +N N ++N + + + KLR + L+ L + + +L +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLR-QALL----ELRPAKNVLIDGVLGSGKTWVA 167
Query: 193 QSVIPENKRSITPNAQ---LTIFRAEEYNATVEFLWAPLLVESNSDDPVNHRLDERIICP 249
V K + + L + +E L LL D R D
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-LL--YQIDPNWTSRSD-----H 219
Query: 250 DSVLKHSSQWEQADILVFNSYLWWRQGPVKLL-----WSSEE----NGVC---------- 290
S +K QA++ L + LL +++ N C
Sbjct: 220 SSNIKLRIHSIQAEL---RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 291 ----------------EELDGLGAMELAMSAWADWVASKLNPLKKRVFFVTMSPTHL--- 331
L E S ++ + L + V +T +P L
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDLPREV--LTTNPRRLSII 333
Query: 332 ----------WSREWQ-------------------PGSEGNCY--------NEKIPID-L 353
W W+ P + + IP L
Sbjct: 334 AESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 354 EGYWGSGSDLPTMRMLDKVLSKL-------GSKVTVLNITQLSEYRKDGHPSIYRKFWET 406
W M +++K+ S +++ +I + + + +++R +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD- 451
Query: 407 LKPQQLSNPPSYSDCIHWCLPG-VPDVWNELLFHFL 441
Y+ + +P ++ + +
Sbjct: 452 ----------HYNIPKTFDSDDLIPPYLDQYFYSHI 477
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 441 | |||
| 4h08_A | 200 | Putative hydrolase; GDSL-like lipase/acylhydrolase | 96.12 |
| >4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.018 Score=51.54 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=36.3
Q ss_pred CCccEEEEecceecccCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhcCCCcceEEEeeCCCCC
Q 013547 260 EQADILVFNSYLWWRQGPVKLLWSSEENGVCEELDGLGAMELAMSAWADWVASKLNPLKKRVFFVTMSPTH 330 (441)
Q Consensus 260 ~~~DVLV~ntG~Ww~~~~~~~~~~~~~~~~~~~~~~~~Ayr~al~t~~~~v~~~~~~~kt~VffRT~SP~H 330 (441)
..+|+|||+.|..= .. ...+.|+..|+++++.+.+. ..+++|++-+..|-.
T Consensus 73 ~~pd~Vvi~~G~ND----~~--------------~~~~~~~~~l~~ii~~l~~~--~p~~~ii~~~~~P~~ 123 (200)
T 4h08_A 73 TKFDVIHFNNGLHG----FD--------------YTEEEYDKSFPKLIKIIRKY--APKAKLIWANTTPVR 123 (200)
T ss_dssp SCCSEEEECCCSSC----TT--------------SCHHHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCE
T ss_pred CCCCeEEEEeeeCC----CC--------------CCHHHHHHHHHHHHHHHhhh--CCCccEEEeccCCCc
Confidence 46799999988641 00 12567888888888887663 346788898888864
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Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 441 | |||
| d2o14a2 | 208 | Hypothetical protein YxiM {Bacillus subtilis [TaxI | 96.48 | |
| d3dc7a1 | 207 | Uncharacterized protein Lp3323 {Lactobacillus plan | 96.35 |
| >d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: SGNH hydrolase family: YxiM C-terminal domain-like domain: Hypothetical protein YxiM species: Bacillus subtilis [TaxId: 1423]
Probab=96.48 E-value=0.0048 Score=53.58 Aligned_cols=94 Identities=9% Similarity=-0.023 Sum_probs=48.2
Q ss_pred ccCCccEEEEecceecccCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhcCCCcceEEEeeCCCCCCCCCCCC
Q 013547 258 QWEQADILVFNSYLWWRQGPVKLLWSSEENGVCEELDGLGAMELAMSAWADWVASKLNPLKKRVFFVTMSPTHLWSREWQ 337 (441)
Q Consensus 258 ~w~~~DVLV~ntG~Ww~~~~~~~~~~~~~~~~~~~~~~~~Ayr~al~t~~~~v~~~~~~~kt~VffRT~SP~Hf~~g~W~ 337 (441)
.....|+|||..|.= .. .. ..-...+.|+..|+++++.+.+ . ...+++-+..|. +. +.
T Consensus 68 ~~~~~D~vvi~~G~N---D~-~~----------~~~~~~~~~~~~l~~li~~~~~---~-~~~~vl~~~~~~-~~---~~ 125 (208)
T d2o14a2 68 YIKPGDYFMLQLGIN---DT-NP----------KHKESEAEFKEVMRDMIRQVKA---K-GADVILSTPQGR-AT---DF 125 (208)
T ss_dssp TCCTTCEEEEECCTG---GG-CG----------GGCCCHHHHHHHHHHHHHHHHT---T-TCEEEEECCCCC-TT---CB
T ss_pred hcCCCCEEEEEcCCC---cc-cc----------cccccHHHHHHHHHHHHHHHHh---c-CCceeecccccc-cc---cc
Confidence 345679999987732 10 00 0012367788888888887654 2 333444333332 11 00
Q ss_pred CCCCCCCCCCCccCCCCCcCCCCCChhhHHHHHHHHHhcCCceEEeecccccc
Q 013547 338 PGSEGNCYNEKIPIDLEGYWGSGSDLPTMRMLDKVLSKLGSKVTVLNITQLSE 390 (441)
Q Consensus 338 ~~~gg~C~~~t~P~~~~~~~~~~~d~~~~~vv~~~~~~~~~~v~lLDIT~ls~ 390 (441)
....... ....+.+.+++++.++ ..+.++|++.++.
T Consensus 126 -----~~~~~~~----------~~~~~~~~~~~~~a~~--~~v~~vD~~~~~~ 161 (208)
T d2o14a2 126 -----TSEGIHS----------SVNRWYRASILALAEE--EKTYLIDLNVLSS 161 (208)
T ss_dssp -----CTTSCBC----------CTTSTTHHHHHHHHHH--TTCEEECHHHHHH
T ss_pred -----ccccchH----------HHHHHHHHHHHHhhcc--CCcEEeccHHHHH
Confidence 0000000 0112345667777666 4688899887764
|
| >d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|