Citrus Sinensis ID: 013568

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
Protein Sequence
MPLEETIKMSSLTFSTISILPLQNEIFSLTSLSSPLHSRIHRRPLTLIAGARRSYRRKPFKKKDMSVAVPITAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPSKSSPHESRYLSNGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVCIC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHEEcccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEc
Secondary Structure Prediction (SSPRO)
cccHHcEcccccccccEEEcccccccccccccccHHHHHHcccccEEEcccccccccccccccccEEEEcccccccccccccccccHHccccccccccEEccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccEEEHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mpleetikmssltfstisilplqNEIFsltslssplhsrihrrpltliagarrsyrrkpfkkkdmsvavpitapslrrdksekslldyesgagkgdmltrdtegemstpskssphesrylsngakffgvdlspdnFAVAMVYFVQGVLGLARLAVNFYlkddlhldpaetavisgfsslpwlikplygfisdslplfgyrrRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERargesqsvsgslqslcwgssafggivSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQqvlgpsrrqnlplgdpsffesSKQNMFQLWEAvkqpnvflpTLFVFLWqatphsdsamfyfttnelgftpeflGRVKFVTSVASLLGVGlyngflknvplrKIFLANTIFGTALGMTQVCIC
Flexible Loop (DISEMBL)
mpleetikmsslTFSTISILPLQNEIFSLTSlssplhsrihrrpltliagarrsyrrkpfkkkdmsvavpitapslrrdksekslldyesgagkgdmltrdtegemstpskssphesRYLSNGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARgesqsvsgslqslCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQvlgpsrrqnlpLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVCIC
Low Complexity Region (SEG)
MPLEETIKMSSLTFSTISILPLQNEIFSLTSLSSPLHSRIHRRPLTLIAGARRSYRRKPFKKKDMSVAVPITAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPSKSSPHESRYLSNGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRsylvlsgllgalswslMATIVESKYsaalsillgslsvaFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVCIC
Disordered region (IsUnstruct)
***********LTFSTISILPLQNEIFSLTSLSSPLHSRIHRRPLTLIAG***********************************************************************NGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVER**********SLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVL********************QNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVCI*
Disordered Region (DISOPRED)
********MSSLTF*************************************************************************************************************AKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVER*********GSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSR*******DPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVCIC
Disordered Region (DISEMBL)
********MSSLTFSTISILPLQNEIFSLTSLSSPLHSRIHRRPLTLIAGARRSYRRKPFKKKDMSVAVPITAPSLRRDKSEKSLLDYESGAGKGDMLT******************RYLSNGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVER***********LQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVCIC
Disordered Region (DISPRO)
*****TIKMSSLTFSTISILPLQNEIFSLTSLSSPLHSRIHRRPLTLIAGARRS**RK*********************************************GEMSTPSKSSPHESRYLSNGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGP******PLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVCIC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPLEETIKMSSLTFSTISILPLQNEIFSLTSLSSPLHSRIHRRPLTLIAGARRSYRRKPFKKKDMSVAVPITAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPSKSSPHESRYLSNGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVCIC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	440	2.2.26 [Sep-21-2011]
Q9SKZ5	560	Folate-biopterin transpor	yes	no	0.963	0.757	0.699	1e-159
Q55721	494	Folate-biopterin transpor	N/A	no	0.688	0.613	0.492	1e-81
Q9SQN2	497	Probable folate-biopterin	no	no	0.629	0.557	0.313	8e-33
Q8RWQ5	491	Probable folate-biopterin	no	no	0.640	0.574	0.288	9e-30
F4KIL8	492	Probable folate-biopterin	no	no	0.615	0.550	0.307	1e-29
Q5FV41	499	Probable folate-biopterin	no	no	0.665	0.587	0.287	9e-29
Q9XIQ7	442	Probable folate-biopterin	no	no	0.684	0.680	0.290	2e-21
Q9LEV7	503	Probable folate-biopterin	no	no	0.622	0.544	0.298	2e-21
F4I5Q2	542	Probable folate-biopterin	no	no	0.643	0.522	0.263	1e-12
O22780	538	Probable folate-biopterin	no	no	0.636	0.520	0.286	3e-12

>sp|Q9SKZ5|FBT1_ARATH Folate-biopterin transporter 1, chloroplastic OS=Arabidopsis thaliana GN=At2g32040 PE=2 SV=2

 Score =  561 bits (1447), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 309/442 (69%), Positives = 349/442 (78%), Gaps = 18/442 (4%)

Query: 9   MSSLTFSTISILPLQNEIFSLTSLSSPLHSRIHRRPLTLIAGARRSYRRKPFKK---KDM 65
           M+S +  +ISI P Q  +  L S+++       RR L + A + R  RRK  K+   +DM
Sbjct: 1   MASRSLFSISISPSQFTV--LPSINN------ERRRLAIAARSHRLSRRKIRKRPPDRDM 52

Query: 66  SVAVPITAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPS----KSSPHESRYLS 121
           S  V I     RRD  E  LLD      +GD    D EG+  T S    +  P + R LS
Sbjct: 53  SSIVSIPELPRRRDSEESLLLDSRISVAEGDTSNTDVEGDRDTTSSIRTQPPPRKGRNLS 112

Query: 122 NG-AKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLP 180
           +   KF+GV+LSPDN AVAMVYFVQGVLGLARLAV+FYLKDDLHLDPAETAVI+G SSLP
Sbjct: 113 SSRIKFYGVELSPDNVAVAMVYFVQGVLGLARLAVSFYLKDDLHLDPAETAVITGLSSLP 172

Query: 181 WLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSV 240
           WL+KPLYGFISDS+PLFGYRRRSYLVLSGLLGA SWSLMA  V+SKYSAA  ILLGSLSV
Sbjct: 173 WLVKPLYGFISDSVPLFGYRRRSYLVLSGLLGAFSWSLMAGFVDSKYSAAFCILLGSLSV 232

Query: 241 AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGV 300
           AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS+V++YGVRFVFGV
Sbjct: 233 AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGV 292

Query: 301 TALLPLITSGVAVLVKEQQVLGPS--RRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFL 358
           TALLPLITS VAVLV EQ+V+ P+  +++N+ L  P F ++SKQNM QLW A+KQPNVFL
Sbjct: 293 TALLPLITSAVAVLVNEQRVVRPASGQKENITLLSPGFLQTSKQNMIQLWGAIKQPNVFL 352

Query: 359 PTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPL 418
           PTLF+FLWQATPHSDSAMFYFTTN+LGFTPEFLGRVK VTS+ASLLGVGLYNGFLK VPL
Sbjct: 353 PTLFIFLWQATPHSDSAMFYFTTNKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPL 412

Query: 419 RKIFLANTIFGTALGMTQVCIC 440
           RKIFL  TIFGT LGMTQV + 
Sbjct: 413 RKIFLVTTIFGTGLGMTQVILV 434

Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin.
Arabidopsis thaliana (taxid: 3702)

>sp|Q55721|FBT_SYNY3 Folate-biopterin transporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0642 PE=1 SV=1

 Score =  304 bits (778), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 158/321 (49%), Positives = 212/321 (66%), Gaps = 18/321 (5%)

Query: 107 STPSKSSPHESRYLSNGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLD 166
           STP K    E   L N   +       +  A+  +YFVQGVLGL+RLAV+F+LKD+L L 
Sbjct: 15  STPLKRFLREKVLLGNAPSW-------ELLAILSIYFVQGVLGLSRLAVSFFLKDELGLS 67

Query: 167 PAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESK 226
           PA    + G  + PW++KP+ G +SD++PLFGYRRRSYL LSGL+G+  W L A  V S 
Sbjct: 68  PAAMGALIGLGAAPWILKPVLGLMSDTVPLFGYRRRSYLWLSGLMGSAGWLLFAAWVSSG 127

Query: 227 YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG 286
             A L +L  SLSVA  DV+VDS+VVERA+ ES +  GSLQSL WG++A GGI+++Y SG
Sbjct: 128 TQAGLVLLFTSLSVAIGDVIVDSLVVERAQRESLAQVGSLQSLTWGAAAVGGIITAYASG 187

Query: 287 SMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ 346
           ++++ +  R VF +TA+ PL+T G A L+ E   +  +  +  P          K  +  
Sbjct: 188 ALLEWFSTRTVFAITAIFPLLTVGAAFLISE---VSTAEEEEKP--------QPKAQIKL 236

Query: 347 LWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGV 406
           +W+AV+Q  + LPTLF+F WQATP ++SA FYFTTNELGF P+FLGRV+ VTSVA L+GV
Sbjct: 237 VWQAVRQKTILLPTLFIFFWQATPSAESAFFYFTTNELGFEPKFLGRVRLVTSVAGLIGV 296

Query: 407 GLYNGFLKNVPLRKIFLANTI 427
           GLY  FLK +P R I   +T+
Sbjct: 297 GLYQRFLKTLPFRVIMGWSTV 317

Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q9SQN2|FBT3_ARATH Probable folate-biopterin transporter 3 OS=Arabidopsis thaliana GN=At1g79710 PE=2 SV=1

 Score =  141 bits (356), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 155/293 (52%), Gaps = 16/293 (5%)

Query: 136 FAVAMVYFV-QGV-LGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDS 193
           F V +VY V QG+  GL++++  +Y KD+  + P++  +  G   +PW+IKPL+G ++D 
Sbjct: 51  FGVIIVYGVSQGLGKGLSKVSTQYYFKDEQKIQPSQAQIYVGLIQIPWIIKPLWGLLTDV 110

Query: 194 LPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILL-GSLSVAFSDVVVDSMVV 252
           +P+ GYRRR Y +L+G L  +S  ++        + ALS L+ GS  VA +DV +D+ V 
Sbjct: 111 VPVLGYRRRPYFILAGFLAMISMMVLWLHTNLHLALALSCLVAGSAGVAIADVTIDACVT 170

Query: 253 ERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVA 312
           + +     +++  +QSLC   S+ G +V    SG +V   G + V+G+      +T+G+ 
Sbjct: 171 QCSISHP-TLAADMQSLCGLCSSIGSLVGFSLSGVLVHLVGSKGVYGLLG----VTAGLL 225

Query: 313 VLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP-H 371
           V+V       PSR       +  F ++       +W+  +   V+ P LF+ L  A   H
Sbjct: 226 VVVGMVLKESPSRSLGRKHVNDKFLDAGS----AIWKTFQYGEVWRPCLFMLLSAAVSLH 281

Query: 372 SDSAMFYFTTNEL---GFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKI 421
               MFY+ T+      F+ E +G +    ++ SL+G+ LY  FLKN P R +
Sbjct: 282 IHEGMFYWYTDSKDGPSFSKEAVGSIMSFGAIGSLVGILLYQNFLKNFPFRNV 334

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWQ5|FBT4_ARATH Probable folate-biopterin transporter 4 OS=Arabidopsis thaliana GN=At5g54860 PE=2 SV=1

 Score =  131 bits (330), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 154/343 (44%), Gaps = 61/343 (17%)

Query: 138 VAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLF 197
           V ++YF QG       AV++ LKD L L P+ +  +   +  PW IKPLYG ISD +P+ 
Sbjct: 20  VCLIYFTQGFRSFVWTAVSYQLKDRLQLSPSASQFVFSVAFFPWSIKPLYGIISDCIPIG 79

Query: 198 GYRRRSYLVLSGLLGALSWSLMATIVESKYSA---ALSILLGSLSVAFSDVVVDSMVVER 254
           G +R  YLV+S +L  + W ++     S+ S+    + + + +L  A +DVV+D+M+ E 
Sbjct: 80  GKKRTPYLVISTVLSLVPWLVLGLDSTSRSSSLYLMIFLTVQNLGSAMADVVIDAMIAEA 139

Query: 255 ARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVL 314
            R E  S +G LQS+ W + A GG+  S   G  +    +  +F +  +LP +      L
Sbjct: 140 VRLEKASFAGDLQSVSWFAMAVGGVCGSLLGGYALSNLKIETIFLLFTVLPALQLLSCAL 199

Query: 315 VKEQQVLGPSRRQNLP-LGDPSFFE------------SSKQN------------------ 343
           V+E     P+  + LP L D + FE            +SK N                  
Sbjct: 200 VEES----PANNEPLPELLDSNEFEEKSLTSNDNYPDTSKSNTRRRKGQKKGKKGDSNGK 255

Query: 344 ----------------------MFQLWEAVKQPNVFLPTLFVFLWQAT-PHSDSAMFYFT 380
                                  F L  A KQP +  P  + F+   T P+  + MFY+ 
Sbjct: 256 SETQKKQSKSLASQWFQSLKAATFGLGRAFKQPIILRPMAWFFIAHITVPNLSTVMFYYQ 315

Query: 381 TNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFL 423
           T  L     FLG  + V  +  + G  +YN +L+++ LRK  L
Sbjct: 316 TEVLQLDAAFLGTARVVGWLGLMFGTFIYNRYLQDMTLRKSLL 358

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|F4KIL8|FBT5_ARATH Probable folate-biopterin transporter 5 OS=Arabidopsis thaliana GN=At5g25040 PE=2 SV=2

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 160/293 (54%), Gaps = 22/293 (7%)

Query: 150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS 208
           L  +A ++Y+KD   + P++   +S  + + W+I KPL+G ++D LP+FG+ RR Y +L+
Sbjct: 63  LGHVATDYYMKDVQKVQPSQYQALSAITRISWIIFKPLFGILTDVLPIFGFHRRPYFILA 122

Query: 209 GLLGALSWSLMATIVESK---YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGS 265
           G++G +  SL+   ++S    Y A   + + S ++A +DV +D+     +  +  S++  
Sbjct: 123 GVIGVV--SLLFISLQSNLHLYLALFWMTISSAAMAIADVTIDACTTYNSN-KHPSLASD 179

Query: 266 LQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSR 325
           +QSLC  S + G ++  + SG +V   G + VFG+      + S V VL  E +V G S 
Sbjct: 180 MQSLCSLSYSIGELLGFFMSGILVHLVGSKGVFGLLTFTFALVSVVGVLFSEPRVHGFSF 239

Query: 326 RQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQA--TPHSDSAMFYFTTNE 383
           +QN        F ++ + M   W  +K  +V+ P+L++F+ +A      +   ++FT ++
Sbjct: 240 KQN--------FTNAMKAM---WRTIKCSDVWQPSLYMFITRALGLDIKEGLFYWFTDSK 288

Query: 384 LG--FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGM 434
            G  F  E +G +  + S+ S+LGV LYN  LK+ P RK+FL   +     GM
Sbjct: 289 DGPLFAQETVGFILSIGSIGSILGVLLYNLRLKDHPFRKLFLWTQLLFALSGM 341

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5FV41|FBT2_ARATH Probable folate-biopterin transporter 2 OS=Arabidopsis thaliana GN=At5g25050 PE=2 SV=1

 Score =  128 bits (321), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 163/313 (52%), Gaps = 20/313 (6%)

Query: 136 FAVAMVYFVQGVLG--LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDS 193
           F V  +Y +   LG  L R+A  +Y+KD   + P+E+  ++  + +PW+IKPL+G ++D 
Sbjct: 47  FGVVSLYGINQGLGGSLGRVATEYYMKDVQKVQPSESQALTAITKIPWIIKPLWGILTDV 106

Query: 194 LPLFGYRRRSYLVLSGLLGALSWSLMATIVESK---YSAALSILLGSLSVAFSDVVVDSM 250
           LP+FG+ RR Y +L+G+LG +  SL+   + S    Y A   + + S ++A +DV +D+ 
Sbjct: 107 LPIFGFHRRPYFILAGVLGVV--SLLFISLHSNLHLYLALFWMTISSAAMAIADVTIDAC 164

Query: 251 VVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSG 310
               +  +  S++  +QSLC  SS+ G ++  + SG +V   G + VFG+      + S 
Sbjct: 165 TAYNSI-KHPSLASDMQSLCSLSSSIGALLGFFMSGILVHLVGSKGVFGLLTFPFALVSV 223

Query: 311 VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF--LWQA 368
           V ++  E  V G S +Q     +  F ++ K     +W  +K  +V+ P+L+++  L   
Sbjct: 224 VGIVFSEPHVPGFSYKQV----NQKFTDAGK----AMWRTMKCSDVWRPSLYMYISLTLG 275

Query: 369 TPHSDSAMFYFTTNELG--FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANT 426
               +   ++FT ++ G  F  E +G +  + S+ S+L   LY   LK+ P R + L   
Sbjct: 276 LNIHEGLFYWFTDSKDGPLFAQETVGFILSIGSIGSILAATLYQLVLKDHPFRGLCLWTQ 335

Query: 427 IFGTALGMTQVCI 439
           +     GM  + +
Sbjct: 336 LLFALSGMLDLIL 348

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIQ7|FBT7_ARATH Probable folate-biopterin transporter 7 OS=Arabidopsis thaliana GN=At1g64890 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 158/324 (48%), Gaps = 23/324 (7%)

Query: 106 MSTPSKSSPHESRYLSNGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHL 165
           MS+ S +   ESR+  N          P  + +   +FVQG  G   L  NF+L + L +
Sbjct: 1   MSSSSDTHAGESRHRRN----------PIRWLLGFGFFVQGFRGFPWLGANFFLTEQLRV 50

Query: 166 DPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVES 225
           +P+   ++   ++LP + KP+YG +SDS+  FG  R  Y+ +  LL A+SW  +A +  S
Sbjct: 51  NPSVLQLLQNSANLPMVAKPIYGVVSDSVYFFGQHRIPYIAVGALLQAISWLAIAFLSRS 110

Query: 226 KYSA-ALSI--LLGSLSVAFSDVVVDSMVVERARGE-SQSVSGSLQSLCWGSSAFGGIVS 281
             S  ALSI  LL +L  +  +V  D++V E  + + S++ SG L S  W  S+ GGI+ 
Sbjct: 111 NVSILALSIYLLLSNLGASLVEVANDAIVAESGKQKTSETQSGELPSFVWMVSSLGGILG 170

Query: 282 SYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSK 341
           +   G  +  +  +  F V  +L L+   V + ++E+ +       NLP  +PS     +
Sbjct: 171 NLLGGIAIKTFSAQSTFLVFGILALLQFLVTINIREKSL-------NLP-ENPSPAGGIR 222

Query: 342 QNMFQLWEAVKQPNVFLPTLFVFLWQA-TPHSDSAMFYFTTNELGFTPEFLGRVKFVTSV 400
           +++  L   +++P +     ++ +  A  P     MF++ T  L      LG  K    +
Sbjct: 223 KHLSDLSHVLRKPEISYSIAWIAVSTAVVPVLTGTMFFYQTKFLKIDASLLGISKVFGQI 282

Query: 401 ASLLGVGLYNGFLKNVPLRKIFLA 424
           A LL    YN +LK +  RK+  A
Sbjct: 283 AMLLWGFAYNRWLKAMRPRKLLTA 306

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LEV7|FBT6_ARATH Probable folate-biopterin transporter 6 OS=Arabidopsis thaliana GN=At5g10820 PE=2 SV=1

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 153/295 (51%), Gaps = 21/295 (7%)

Query: 145 QGVLG-LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRS 203
           QG  G + ++  ++Y KD   + P+   +  G   +PW+++P++G  +D  P+ GY+R+ 
Sbjct: 69  QGFSGSIFKVVTDYYWKDVQQVQPSVVQLYMGLYYIPWVMRPIWGLFTDVFPIKGYKRKP 128

Query: 204 YLVLSGLLGALSWSLMATIVESKYSA--ALSILLG-SLSVAFSDVVVDSMVVERARGESQ 260
           Y V+SG+LG +  S +A +V  K  A  ALS LLG S ++A +DVV+D+ +   +    +
Sbjct: 129 YFVVSGVLGLV--SAIAIVVLGKLPAALALSCLLGVSAAMAIADVVIDACIATNSI-NIR 185

Query: 261 SVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLP--LITSGVAVLVKEQ 318
           S++  +QSLC   S+ G +V    SG  V   G +   GV A  P  ++  G  +  K  
Sbjct: 186 SLAPDIQSLCMVCSSAGALVGYATSGVFVHQLGPQGALGVLAFSPATIVILGFFIYEKRS 245

Query: 319 QVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQA-TPHSDSAMF 377
             + P+++      D      + + M +    VK P V+ P+L++F+  A    +    F
Sbjct: 246 STV-PTQKTK---KDTDGLGVAVKGMCK---TVKYPEVWKPSLYMFISLALNISTHEGHF 298

Query: 378 YFTTNEL---GFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKI-FLANTIF 428
           Y+ T+      F+ EF+G +  V ++AS+ GV +Y+  LK    R I F A  ++
Sbjct: 299 YWYTDPTAGPAFSQEFVGIIYAVGALASMFGVLIYHKKLKGYSFRNILFFAQLLY 353

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|F4I5Q2|FBT8_ARATH Probable folate-biopterin transporter 8, chloroplastic OS=Arabidopsis thaliana GN=At1g04570 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 139/296 (46%), Gaps = 13/296 (4%)

Query: 142 YFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRR 201
           Y+VQG      LA+NF++   L L P+   ++    SLP + KPLYG +SD L +   RR
Sbjct: 95  YWVQGSRCFPWLALNFHMVHSLALQPSTLQLVQYSCSLPMVAKPLYGVLSDVLYIGSGRR 154

Query: 202 RSYLVLSGLLGALSWSLMATIVESKY---SAALSILLGSLSVAFSDVVVDSMVVERARGE 258
             Y+ +   L  L+W  M     ++    S    +LL +L  + ++V  D++V E   G 
Sbjct: 155 VPYIAIGVFLQVLAWGSMGIFQGAREVLPSLVACVLLSNLGASITEVAKDALVAE--YGL 212

Query: 259 SQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQ 318
              ++G LQS    +SA GG++ +   G ++     +  F V + L  +   V++  KE+
Sbjct: 213 RYRING-LQSYALMASAAGGVLGNLLGGYLLLTTPPKISFLVFSALLSLQLVVSLSSKEE 271

Query: 319 QVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQA-TPHSDSAMF 377
               P   +       S  ES K+ +  L EA++   +  P ++  +  A  P    ++F
Sbjct: 272 SFGLPRIAET-----SSVLESVKKQISNLKEAIQADEISQPLIWAVVSIAMVPLLSGSVF 326

Query: 378 YFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRK-IFLANTIFGTAL 432
            + T  L   P  +G  K +  +  L    +Y+ +LK +P+R  I +   ++G ++
Sbjct: 327 CYQTQVLNLDPSVIGMSKVIGQLMLLCLTVVYDRYLKTLPMRPLIHIIQLLYGLSI 382

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|O22780|FBT9_ARATH Probable folate-biopterin transporter 9, chloroplastic OS=Arabidopsis thaliana GN=At2g33280 PE=3 SV=2

 Score = 73.6 bits (179), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 139/290 (47%), Gaps = 10/290 (3%)

Query: 138 VAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLF 197
            A+ Y+VQG+   + LA+NF++   L+L P+   ++   +SLP + KPLYG +SD L + 
Sbjct: 88  CALGYWVQGLRCFSWLALNFHMAHCLNLKPSTLQLVQYTASLPMVAKPLYGVLSDVLYIG 147

Query: 198 GYRRRSYLVLSGLLGALSWSLMATIVESKY---SAALSILLGSLSVAFSDVVVDSMVVER 254
           G RR  Y+ +  LL  L+W  +A    ++    S    ILL +L  + ++V  D++V E 
Sbjct: 148 GARRVPYISVGVLLQGLAWGSLAIFPGAREVLPSLMAFILLSNLGASITEVSQDALVAE- 206

Query: 255 ARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVF-GVTALLPLITSGVAV 313
             G    ++G LQS    +SA GGI+ +   G  +     R +F   TALL L    V++
Sbjct: 207 -YGLRYQING-LQSYALMASAVGGILGNLLGGYCLLKTPPRILFLAFTALLSL-QLIVSL 263

Query: 314 LVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQA-TPHS 372
             KE+ V  P   +  P    S     K+    L   V+   +  P +++    A  P  
Sbjct: 264 SSKEESVNLPRIGEVTP-EISSVLGIVKKQFLDLKGIVQVDEISQPLIWIVSSIALVPLL 322

Query: 373 DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIF 422
             ++F + T  L   P  +G  K +  +  L    +Y+ + K +P+R + 
Sbjct: 323 SGSVFCYQTQVLNLDPSVIGMSKVIGQLMLLCLTVVYDRYWKKLPMRALI 372

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
224108011	559	predicted protein [Populus trichocarpa]	0.954	0.751	0.762	1e-167
225432704	482	PREDICTED: uncharacterized protein LOC10	0.8	0.730	0.823	1e-159
297822959	558	integral membrane transporter family pro	0.959	0.756	0.694	1e-157
18402856	560	major facilitator protein [Arabidopsis t	0.963	0.757	0.699	1e-157
297737073	538	unnamed protein product [Vitis vinifera]	0.918	0.750	0.713	1e-157
255552145	496	transporter, putative [Ricinus communis]	0.822	0.729	0.803	1e-156
356574412	505	PREDICTED: uncharacterized protein LOC10	0.786	0.685	0.789	1e-147
356535999	554	PREDICTED: uncharacterized protein LOC10	0.790	0.628	0.778	1e-147
449433309	546	PREDICTED: folate-biopterin transporter	0.879	0.708	0.693	1e-145
357111427	574	PREDICTED: uncharacterized protein LOC10	0.765	0.587	0.72	1e-140

>gi|224108011|ref|XP_002314687.1| predicted protein [Populus trichocarpa] gi|222863727|gb|EEF00858.1| predicted protein [Populus trichocarpa]

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 325/426 (76%), Positives = 365/426 (85%), Gaps = 6/426 (1%)

Query: 15  STISILP-LQNEIFSLTSLSSPLHSRIHRRPLTLIA--GARRSYRRKPFKKKDMSVAVPI 71
           S+ SILP  QN I S  +LS   H +IHR+ L++++    RR  RRK    KDMSVA+ +
Sbjct: 8   SSFSILPSHQNPILSSLTLSP--HFQIHRKRLSIVSHRRTRRRPRRKLAGGKDMSVAINM 65

Query: 72  TAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPSKSSPHESRYLSNGAKFFGVDL 131
             PS RRDKS+ S+LD  + AG+ +MLT D EGEMS+ SK++   S+YL +    FGVDL
Sbjct: 66  PTPSHRRDKSQDSVLDSTNSAGEREMLTADVEGEMSSTSKNAMRISKYLIS-RICFGVDL 124

Query: 132 SPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFIS 191
           SPDN AVAMVYFVQGVLGLARLAV+FYLKDDLHL+PAETAVISGFS+LPWLIKPLYGFIS
Sbjct: 125 SPDNIAVAMVYFVQGVLGLARLAVSFYLKDDLHLEPAETAVISGFSALPWLIKPLYGFIS 184

Query: 192 DSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMV 251
           DS+PLFGYRRRSYLVLSGLLGALSWSLM+T V+SKYSAA  ILLGSLSVAFSDVVVDSMV
Sbjct: 185 DSVPLFGYRRRSYLVLSGLLGALSWSLMSTFVDSKYSAAFCILLGSLSVAFSDVVVDSMV 244

Query: 252 VERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGV 311
           VERARGESQS+SGSLQSLCWGSSAFGGIVSSYFSGS+VDAYGVRFVFGVTALLPLITS V
Sbjct: 245 VERARGESQSMSGSLQSLCWGSSAFGGIVSSYFSGSLVDAYGVRFVFGVTALLPLITSAV 304

Query: 312 AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH 371
           AVLV+EQ+VLGP+   +L L    F ESSKQ++ QLW+AVKQPNVFLPTLF+FLWQATP 
Sbjct: 305 AVLVREQRVLGPASGPSLALPGSGFLESSKQHIVQLWDAVKQPNVFLPTLFIFLWQATPQ 364

Query: 372 SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA 431
           SDSAMF+FTTN+LGFTPEFLGRVK VTSVASLLGVGLYNGFLKNVPLRKIF+A T+ GTA
Sbjct: 365 SDSAMFFFTTNKLGFTPEFLGRVKLVTSVASLLGVGLYNGFLKNVPLRKIFVATTVTGTA 424

Query: 432 LGMTQV 437
           LGMTQV
Sbjct: 425 LGMTQV 430

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432704|ref|XP_002278798.1| PREDICTED: uncharacterized protein LOC100254579 [Vitis vinifera]

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 290/352 (82%), Positives = 317/352 (90%)

Query: 86  LDYESGAGKGDMLTRDTEGEMSTPSKSSPHESRYLSNGAKFFGVDLSPDNFAVAMVYFVQ 145
           ++   GAGKGDMLT + EGE  + S+ +P ++RYL +  K FGVDLSPDN AVAMVYFVQ
Sbjct: 1   MELVGGAGKGDMLTTNMEGETCSHSQVAPRKNRYLMSNVKCFGVDLSPDNVAVAMVYFVQ 60

Query: 146 GVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYL 205
           GVLGL+RLAV+FYLKDDLHLDPAETAVISGFS+LPWL+KPLYGFISDSLPLFGYRRRSYL
Sbjct: 61  GVLGLSRLAVSFYLKDDLHLDPAETAVISGFSALPWLVKPLYGFISDSLPLFGYRRRSYL 120

Query: 206 VLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGS 265
           VLSGLLGALSWSLMAT V+SKY AA  ILLGSLSVAFSDVVVDSMVVERARGESQS+SGS
Sbjct: 121 VLSGLLGALSWSLMATFVDSKYGAAFCILLGSLSVAFSDVVVDSMVVERARGESQSMSGS 180

Query: 266 LQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSR 325
           LQSLCWGSSAFGGIVSSYFSGS+V AYGVRFVFGVTALLPLITS VA+LVKEQ V GP+R
Sbjct: 181 LQSLCWGSSAFGGIVSSYFSGSLVGAYGVRFVFGVTALLPLITSAVAILVKEQPVAGPAR 240

Query: 326 RQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELG 385
            Q  PL  PSF+ESSKQN+ QLW+AV+Q N+FLPTLF+FLWQATPHSDSAMFYFTTN LG
Sbjct: 241 GQAFPLISPSFYESSKQNIIQLWDAVRQRNIFLPTLFIFLWQATPHSDSAMFYFTTNRLG 300

Query: 386 FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQV 437
           FTPEFLGRVK VTSVASL+GVGLYNGFLK+VPLRKIF   TIFG+ALGMTQV
Sbjct: 301 FTPEFLGRVKLVTSVASLIGVGLYNGFLKDVPLRKIFFVTTIFGSALGMTQV 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822959|ref|XP_002879362.1| integral membrane transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297325201|gb|EFH55621.1| integral membrane transporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 307/442 (69%), Positives = 348/442 (78%), Gaps = 20/442 (4%)

Query: 9   MSSLTFSTISILPLQNEIFSLTSLSS-----PLHSRIHRRPLTLIAGARRSYRRKPFKKK 63
           M+SL   +ISI P  ++I  L S+++      + +R HR P       RR  R++P   +
Sbjct: 1   MASLNLFSISISP--SQITLLPSINNGTRRLAIAARSHRVP-------RRKIRKRP-PDR 50

Query: 64  DMSVAVPITAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPS--KSSPHESRYLS 121
           DMS  V I     RRD  E  LLD      +GD    + E +  T S     P + R LS
Sbjct: 51  DMSSIVSIPELPRRRDSEESLLLDSRISVAEGDTSNTNVEEDRDTSSIRTQPPRKERNLS 110

Query: 122 -NGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLP 180
              +KF+GV+LSPDN AVAMVYFVQGVLGLARLAV+FYLKDDL LDPAETAVI+G SSLP
Sbjct: 111 ITRSKFYGVELSPDNVAVAMVYFVQGVLGLARLAVSFYLKDDLRLDPAETAVITGLSSLP 170

Query: 181 WLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSV 240
           WL+KPLYGFISDS+PLFGYRRRSYLVLSGLLGA SWSLMA  V+SKYSAA  ILLGSLSV
Sbjct: 171 WLVKPLYGFISDSVPLFGYRRRSYLVLSGLLGAFSWSLMAAFVDSKYSAAFCILLGSLSV 230

Query: 241 AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGV 300
           AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS+V++YGVRFVFGV
Sbjct: 231 AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGV 290

Query: 301 TALLPLITSGVAVLVKEQQVLGPS--RRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFL 358
           TALLPLITS VAVLV EQ+V+ P+  +++N+PL  P F ++SKQNM QLW A+KQPNVFL
Sbjct: 291 TALLPLITSAVAVLVNEQRVVRPASGQKENIPLVSPGFLQTSKQNMIQLWSAIKQPNVFL 350

Query: 359 PTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPL 418
           PTLF+FLWQATPHSDSAMFYFTTN+LGFTPEFLGRVK VTS+ASLLGVGLYNGFLK VPL
Sbjct: 351 PTLFIFLWQATPHSDSAMFYFTTNKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPL 410

Query: 419 RKIFLANTIFGTALGMTQVCIC 440
           RKIFL  TIFGT LGMTQV + 
Sbjct: 411 RKIFLVTTIFGTGLGMTQVILV 432

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402856|ref|NP_565734.1| major facilitator protein [Arabidopsis thaliana] gi|75206588|sp|Q9SKZ5.2|FBT1_ARATH RecName: Full=Folate-biopterin transporter 1, chloroplastic; Flags: Precursor gi|19698919|gb|AAL91195.1| unknown protein [Arabidopsis thaliana] gi|20197619|gb|AAD15400.2| expressed protein [Arabidopsis thaliana] gi|21553656|gb|AAM62749.1| unknown [Arabidopsis thaliana] gi|28059039|gb|AAO29981.1| unknown protein [Arabidopsis thaliana] gi|330253531|gb|AEC08625.1| major facilitator protein [Arabidopsis thaliana]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 309/442 (69%), Positives = 349/442 (78%), Gaps = 18/442 (4%)

Query: 9   MSSLTFSTISILPLQNEIFSLTSLSSPLHSRIHRRPLTLIAGARRSYRRKPFKK---KDM 65
           M+S +  +ISI P Q  +  L S+++       RR L + A + R  RRK  K+   +DM
Sbjct: 1   MASRSLFSISISPSQFTV--LPSINN------ERRRLAIAARSHRLSRRKIRKRPPDRDM 52

Query: 66  SVAVPITAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPS----KSSPHESRYLS 121
           S  V I     RRD  E  LLD      +GD    D EG+  T S    +  P + R LS
Sbjct: 53  SSIVSIPELPRRRDSEESLLLDSRISVAEGDTSNTDVEGDRDTTSSIRTQPPPRKGRNLS 112

Query: 122 NG-AKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLP 180
           +   KF+GV+LSPDN AVAMVYFVQGVLGLARLAV+FYLKDDLHLDPAETAVI+G SSLP
Sbjct: 113 SSRIKFYGVELSPDNVAVAMVYFVQGVLGLARLAVSFYLKDDLHLDPAETAVITGLSSLP 172

Query: 181 WLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSV 240
           WL+KPLYGFISDS+PLFGYRRRSYLVLSGLLGA SWSLMA  V+SKYSAA  ILLGSLSV
Sbjct: 173 WLVKPLYGFISDSVPLFGYRRRSYLVLSGLLGAFSWSLMAGFVDSKYSAAFCILLGSLSV 232

Query: 241 AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGV 300
           AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS+V++YGVRFVFGV
Sbjct: 233 AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGV 292

Query: 301 TALLPLITSGVAVLVKEQQVLGPS--RRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFL 358
           TALLPLITS VAVLV EQ+V+ P+  +++N+ L  P F ++SKQNM QLW A+KQPNVFL
Sbjct: 293 TALLPLITSAVAVLVNEQRVVRPASGQKENITLLSPGFLQTSKQNMIQLWGAIKQPNVFL 352

Query: 359 PTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPL 418
           PTLF+FLWQATPHSDSAMFYFTTN+LGFTPEFLGRVK VTS+ASLLGVGLYNGFLK VPL
Sbjct: 353 PTLFIFLWQATPHSDSAMFYFTTNKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPL 412

Query: 419 RKIFLANTIFGTALGMTQVCIC 440
           RKIFL  TIFGT LGMTQV + 
Sbjct: 413 RKIFLVTTIFGTGLGMTQVILV 434

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737073|emb|CBI26274.3| unnamed protein product [Vitis vinifera]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 309/433 (71%), Positives = 348/433 (80%), Gaps = 29/433 (6%)

Query: 9   MSSLTFSTISILPLQNEIFSLTSLSSPLHSRIHRRPLTLIAG----ARRSYRRKPFKKKD 64
           M+ LT + +S+LP QN  F      SP+ S+IHR+P T +AG      R  RRKP  +K 
Sbjct: 1   MAPLTSTPVSLLPFQNP-FLPLLSLSPILSQIHRKPATFLAGIHGITHRKTRRKP-PEKS 58

Query: 65  MSVAVPITAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPSKSSPHESRYLSNGA 124
           MSV+V +  PS RRD+ + + +D  + AGKGDMLT + EGE  + S+ +P ++RYL +  
Sbjct: 59  MSVSVQMPTPSHRRDRDDDTDVDSRNCAGKGDMLTTNMEGETCSHSQVAPRKNRYLMSNV 118

Query: 125 KFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIK 184
           K FGVDLSPDN AVAMVYFVQGVLGL+RLAV+FYLKDDLHLDPAETAVISGFS+LPWL+K
Sbjct: 119 KCFGVDLSPDNVAVAMVYFVQGVLGLSRLAVSFYLKDDLHLDPAETAVISGFSALPWLVK 178

Query: 185 PLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSD 244
           PLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMAT V+SKY AA  ILLGSLSVAFSD
Sbjct: 179 PLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATFVDSKYGAAFCILLGSLSVAFSD 238

Query: 245 VVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALL 304
           VVVDSMVVERARGESQS+SGSLQSLCWGSSAFGGIVSSYFSGS+V AYGVRFVFGVTALL
Sbjct: 239 VVVDSMVVERARGESQSMSGSLQSLCWGSSAFGGIVSSYFSGSLVGAYGVRFVFGVTALL 298

Query: 305 PLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF 364
           PLITS VA+LVKEQ                        N+ QLW+AV+Q N+FLPTLF+F
Sbjct: 299 PLITSAVAILVKEQ-----------------------PNIIQLWDAVRQRNIFLPTLFIF 335

Query: 365 LWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLA 424
           LWQATPHSDSAMFYFTTN LGFTPEFLGRVK VTSVASL+GVGLYNGFLK+VPLRKIF  
Sbjct: 336 LWQATPHSDSAMFYFTTNRLGFTPEFLGRVKLVTSVASLIGVGLYNGFLKDVPLRKIFFV 395

Query: 425 NTIFGTALGMTQV 437
            TIFG+ALGMTQV
Sbjct: 396 TTIFGSALGMTQV 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552145|ref|XP_002517117.1| transporter, putative [Ricinus communis] gi|223543752|gb|EEF45280.1| transporter, putative [Ricinus communis]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 294/366 (80%), Positives = 322/366 (87%), Gaps = 4/366 (1%)

Query: 74  PSLRRDKS-EKSLLDYESGAGKGDMLTRDTEGEMSTPSKSSPHESRYLSNGA-KFFGVDL 131
           PS RR++S E SLL  E+  GKG+M+ R    E    S S   ++R +S+G  K FGV+L
Sbjct: 4   PSHRRERSDETSLLISENSTGKGEMVARSEVEE--EGSYSGVRKNRKMSSGRLKCFGVEL 61

Query: 132 SPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFIS 191
           SPDN AVAMVYFVQGVLGL+RLAV+FYLKDDLHLDPAETAVISGFS+LPWL+KPLYGFIS
Sbjct: 62  SPDNVAVAMVYFVQGVLGLSRLAVSFYLKDDLHLDPAETAVISGFSALPWLVKPLYGFIS 121

Query: 192 DSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMV 251
           DS+PLFGYRRRSYLVLSGLLGALSWSLMA  V+SKY AA  ILLGSLSVAFSDVVVDSMV
Sbjct: 122 DSVPLFGYRRRSYLVLSGLLGALSWSLMAIFVDSKYGAAFCILLGSLSVAFSDVVVDSMV 181

Query: 252 VERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGV 311
           VERARGESQS+SGSLQSLCWGSSAFGGIVSSYFSGS+V AYGVRFVFGVTALLPL+TSGV
Sbjct: 182 VERARGESQSMSGSLQSLCWGSSAFGGIVSSYFSGSLVGAYGVRFVFGVTALLPLLTSGV 241

Query: 312 AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH 371
           AVLVKEQ++LGP R QNL LG   F ESSKQ++ QLW+AVKQPNVFLPTLF+FLWQATPH
Sbjct: 242 AVLVKEQRILGPIRGQNLTLGGNGFLESSKQHIIQLWDAVKQPNVFLPTLFIFLWQATPH 301

Query: 372 SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA 431
           SDSAMFYFTTN+LGFTPEFLGRVK VTS+ASL GVGLYNGFLKNVPLRKIF+  TI GTA
Sbjct: 302 SDSAMFYFTTNKLGFTPEFLGRVKLVTSIASLAGVGLYNGFLKNVPLRKIFVFTTISGTA 361

Query: 432 LGMTQV 437
           LGMTQV
Sbjct: 362 LGMTQV 367

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574412|ref|XP_003555342.1| PREDICTED: uncharacterized protein LOC100802771 [Glycine max]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 273/346 (78%), Positives = 300/346 (86%)

Query: 92  AGKGDMLTRDTEGEMSTPSKSSPHESRYLSNGAKFFGVDLSPDNFAVAMVYFVQGVLGLA 151
           AGK D LT DT+ E S+  + +  + +Y  +  K FGV+LSPDN AVAMVYFVQGVLGLA
Sbjct: 31  AGKDDALTADTDLEASSSGRIASRKQKYWVSSIKLFGVELSPDNVAVAMVYFVQGVLGLA 90

Query: 152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLL 211
           RLAVNFYLKDDLHLDPAE AVISGFS+LPWL+KPLYGFISDS+PLFGYRRRSYLVLSGLL
Sbjct: 91  RLAVNFYLKDDLHLDPAEAAVISGFSALPWLVKPLYGFISDSVPLFGYRRRSYLVLSGLL 150

Query: 212 GALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCW 271
           GALSWSLMAT V++KYSA   ILLGSLSVAFSDVVVDSMVVERARGESQS SGSLQSLCW
Sbjct: 151 GALSWSLMATFVDNKYSAGFCILLGSLSVAFSDVVVDSMVVERARGESQSTSGSLQSLCW 210

Query: 272 GSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPL 331
           GSSAFGGIVSSYFSGS++DAYGVRFVFGVT+LLPLITS VAVLVKEQ + G +R  N+  
Sbjct: 211 GSSAFGGIVSSYFSGSLLDAYGVRFVFGVTSLLPLITSVVAVLVKEQPMFGTTRGLNILF 270

Query: 332 GDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFL 391
             P F ESSKQ + QLW +V+Q +VFLPTLF+FLWQATP SDSAMFYFTTN LGFTPEFL
Sbjct: 271 AGPEFLESSKQRIIQLWGSVRQRSVFLPTLFIFLWQATPQSDSAMFYFTTNSLGFTPEFL 330

Query: 392 GRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQV 437
           GRVK VTS+ASLLGVGLYNGFLKNVPLRKIF A T+ G+ LGMTQV
Sbjct: 331 GRVKLVTSIASLLGVGLYNGFLKNVPLRKIFFATTLLGSTLGMTQV 376

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535999|ref|XP_003536528.1| PREDICTED: uncharacterized protein LOC100777034 [Glycine max]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 271/348 (77%), Positives = 305/348 (87%)

Query: 90  SGAGKGDMLTRDTEGEMSTPSKSSPHESRYLSNGAKFFGVDLSPDNFAVAMVYFVQGVLG 149
           +G   GD LT +T+ E+S+ S+ +  +++Y ++  K FGV+LSPDN AVAMVYFVQGVLG
Sbjct: 78  AGTDDGDALTTETDPEVSSSSRIAARKNKYRTSSIKLFGVELSPDNVAVAMVYFVQGVLG 137

Query: 150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSG 209
           LARLAVNFYLKDDLHLDPAE AV+SGFS+LPWL+KPLYGFISDS+PLFGYRRRSYLVLSG
Sbjct: 138 LARLAVNFYLKDDLHLDPAEAAVLSGFSALPWLVKPLYGFISDSVPLFGYRRRSYLVLSG 197

Query: 210 LLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSL 269
           LLGALSWSLMAT V++KYSA   ILLGSLSVAFSDVVVDSMVVERARGESQS SGSLQSL
Sbjct: 198 LLGALSWSLMATFVDNKYSAGFCILLGSLSVAFSDVVVDSMVVERARGESQSTSGSLQSL 257

Query: 270 CWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNL 329
           CWGSSAFGGIVSSYFSGS++DAYGVRFVFGVT+LLPLITS VAVLVKEQ ++G +R  NL
Sbjct: 258 CWGSSAFGGIVSSYFSGSLLDAYGVRFVFGVTSLLPLITSVVAVLVKEQPMIGTARGLNL 317

Query: 330 PLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPE 389
               P F ESSKQ + QLW +V+Q +VFLPTLF+FLWQATP SDSAMFYFTTN LGFTPE
Sbjct: 318 LFSGPEFLESSKQRIIQLWGSVRQRSVFLPTLFIFLWQATPQSDSAMFYFTTNSLGFTPE 377

Query: 390 FLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQV 437
           FLGRVK VTS+ASLLGVGLYNGFLKNVPLRK+F A T+ G+ LGMTQV
Sbjct: 378 FLGRVKLVTSIASLLGVGLYNGFLKNVPLRKVFFATTLLGSTLGMTQV 425

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433309|ref|XP_004134440.1| PREDICTED: folate-biopterin transporter 1, chloroplastic-like [Cucumis sativus]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 290/418 (69%), Positives = 328/418 (78%), Gaps = 31/418 (7%)

Query: 32  LSSPLHSRIHRRPLTLIAGA-RRSYRRKPFK--------KKDMSVAVPITAPSLRRDKSE 82
           LS P  S+I R+     +GA +RS +  P          K DMSVAVP+   SL   +S 
Sbjct: 24  LSFPPSSKIRRKLPPPGSGAFKRSPQSSPLTPSPCRDPPKDDMSVAVPMDDESLPNSRS- 82

Query: 83  KSLLDYESGAGKGDMLTRDTEGEMSTPS-KSSPHESRYLSNGAKFFGVDLSPDNFAVAMV 141
                           + D EG +S+ S K++ H+ +Y ++  K FGVDLSPDN AVAMV
Sbjct: 83  ----------------SNDMEGMVSSNSDKTTVHKKKYYTSTIKIFGVDLSPDNVAVAMV 126

Query: 142 YFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRR 201
           YFVQGVLGLARLAV+FYLKDDLHLDPAETAV+SGFS+ PWL+KPLYGFISDS+PLFGYRR
Sbjct: 127 YFVQGVLGLARLAVSFYLKDDLHLDPAETAVVSGFSAFPWLVKPLYGFISDSVPLFGYRR 186

Query: 202 RSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQS 261
           RSYL+LSGLLGALSW+LMAT+V+SKY AA  ILLGSLSVAFSDVVVDSMVVERARGESQS
Sbjct: 187 RSYLILSGLLGALSWTLMATLVDSKYGAAFCILLGSLSVAFSDVVVDSMVVERARGESQS 246

Query: 262 VSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVL 321
           +SGSLQSLCWGSSAFGGIVSSYFSGS+VDAYGVRFVFGVTALLPLITS VAVLVKEQ   
Sbjct: 247 MSGSLQSLCWGSSAFGGIVSSYFSGSLVDAYGVRFVFGVTALLPLITSVVAVLVKEQ--- 303

Query: 322 GPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTT 381
            P R  N P  +  F  SS+Q++ +LW AV Q NV LPTLF+FLWQATP SDSAMF+FTT
Sbjct: 304 -PVRGINRPSANYDFVRSSRQHVVELWGAVSQRNVLLPTLFIFLWQATPQSDSAMFFFTT 362

Query: 382 NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVCI 439
           N+LGFTPEFLGRVK VTS+ASLLGVGLYNGFLK VPLRKIFL  TIFG ALGM+QV +
Sbjct: 363 NKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKKVPLRKIFLVTTIFGCALGMSQVLL 420

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357111427|ref|XP_003557515.1| PREDICTED: uncharacterized protein LOC100844201 [Brachypodium distachyon]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 252/350 (72%), Positives = 289/350 (82%), Gaps = 13/350 (3%)

Query: 102 TEGEMSTPSKSSPHESRYL-SNG----------AKFFGVDLSPDNFAVAMVYFVQGVLGL 150
           TEG+ ST       +   L +NG          +K F VDLSPDN AVA VYFVQGVLGL
Sbjct: 109 TEGDNSTNGNLEGLQKNQLGTNGFSSSMSKSGYSKAFEVDLSPDNVAVATVYFVQGVLGL 168

Query: 151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGL 210
           +RLAV+FYLKD+L LDPAETAVI GFS+LPWL+KPLYGFISDS+PLFGYRRRSYL+LSGL
Sbjct: 169 SRLAVSFYLKDNLQLDPAETAVIYGFSALPWLVKPLYGFISDSIPLFGYRRRSYLILSGL 228

Query: 211 LGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLC 270
           LGA+SWSLMATIV+ KYSA L+I+LGSL+VAF+DVVVDSMVVERARGESQS SGSLQSLC
Sbjct: 229 LGAISWSLMATIVDDKYSATLAIILGSLAVAFADVVVDSMVVERARGESQSTSGSLQSLC 288

Query: 271 WGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLP 330
           WGSSAFGG+VS+YFSGS+VD YGVRFVFGVTA LPL+TS VAVLV EQ++  PSR +++ 
Sbjct: 289 WGSSAFGGVVSAYFSGSLVDTYGVRFVFGVTAFLPLMTSAVAVLVNEQRL--PSRERSIS 346

Query: 331 LGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEF 390
           +      ESSKQ + Q+W AVKQPN+FLPTLF+FLWQATP SDSAMFYF TN++GFTPEF
Sbjct: 347 VSGSGLIESSKQQIMQIWSAVKQPNIFLPTLFIFLWQATPQSDSAMFYFVTNKIGFTPEF 406

Query: 391 LGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVCIC 440
           LG V  VTSVASLLG+G+YN FLK VPLRKIFL  TI G+ LGMTQV + 
Sbjct: 407 LGHVTVVTSVASLLGIGIYNSFLKAVPLRKIFLVTTILGSVLGMTQVLLV 456

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
TAIR|locus:2045462	560	AT2G32040 "AT2G32040" [Arabido	0.961	0.755	0.639	8.5e-136
UNIPROTKB|Q55721	494	slr0642 "Folate-biopterin tran	0.715	0.637	0.432	4e-67
GENEDB_PFALCIPARUM|PF11_0172	455	PF11_0172 "folate/biopterin tr	0.625	0.604	0.286	1.6e-29
UNIPROTKB|Q8IIK1	455	PF11_0172 "Folate/biopterin tr	0.625	0.604	0.286	1.6e-29
TAIR|locus:2160150	491	AT5G54860 "AT5G54860" [Arabido	0.447	0.401	0.297	3e-26
TAIR|locus:2017814	497	AT1G79710 "AT1G79710" [Arabido	0.629	0.557	0.273	3.3e-25
TAIR|locus:2179285	499	AT5G25050 "AT5G25050" [Arabido	0.670	0.591	0.260	1.9e-23
GENEDB_PFALCIPARUM|MAL8P1.13	505	MAL8P1.13 "integral membrane p	0.625	0.544	0.25	3.3e-21
UNIPROTKB|Q8IBB7	505	MAL8P1.13 "Folate/biopterin tr	0.625	0.544	0.25	3.3e-21
TAIR|locus:2010911	442	AT1G64890 "AT1G64890" [Arabido	0.647	0.644	0.244	4.6e-18

TAIR|locus:2045462 AT2G32040 "AT2G32040" [Arabidopsis thaliana (taxid:3702)]

 Score = 1330 (473.2 bits), Expect = 8.5e-136, P = 8.5e-136
 Identities = 282/441 (63%), Positives = 322/441 (73%)

Query:     9 MSSLTFSTISILPLQNEIFSLTSLSSPLHSRIHRRPLTLIAGARRSYRRKPFKK---KDM 65
             M+S +  +ISI P Q  +  L S+++       RR L + A + R  RRK  K+   +DM
Sbjct:     1 MASRSLFSISISPSQFTV--LPSINN------ERRRLAIAARSHRLSRRKIRKRPPDRDM 52

Query:    66 SVAVPITAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPS----KSSPHESRYLS 121
             S  V I     RRD  E  LLD      +GD    D EG+  T S    +  P + R LS
Sbjct:    53 SSIVSIPELPRRRDSEESLLLDSRISVAEGDTSNTDVEGDRDTTSSIRTQPPPRKGRNLS 112

Query:   122 NGA-KFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLP 180
             +   KF+GV+LSPDN AVAMVYFVQGVLGLARLAV+FYLKDDLHLDPAETAVI+G SSLP
Sbjct:   113 SSRIKFYGVELSPDNVAVAMVYFVQGVLGLARLAVSFYLKDDLHLDPAETAVITGLSSLP 172

Query:   181 WLIKPLYGFISDSLPLFGYRRRXXXXXXXXXXXXXXXXMATIVESKYXXXXXXXXXXXXX 240
             WL+KPLYGFISDS+PLFGYRRR                MA  V+SKY             
Sbjct:   173 WLVKPLYGFISDSVPLFGYRRRSYLVLSGLLGAFSWSLMAGFVDSKYSAAFCILLGSLSV 232

Query:   241 XFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGV 300
              FSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS+V++YGVRFVFGV
Sbjct:   233 AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGV 292

Query:   301 TALLPLITSGVAVLVKEQQVLGPS--RRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFL 358
             TALLPLITS VAVLV EQ+V+ P+  +++N+ L  P F ++SKQNM QLW A+KQPNVFL
Sbjct:   293 TALLPLITSAVAVLVNEQRVVRPASGQKENITLLSPGFLQTSKQNMIQLWGAIKQPNVFL 352

Query:   359 PTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPL 418
             PTLF+FLWQATPHSDSAMFYFTTN+LGFTPEFLGRVK VTS+ASLLGVGLYNGFLK VPL
Sbjct:   353 PTLFIFLWQATPHSDSAMFYFTTNKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPL 412

Query:   419 RKIFLANTIFGTALGMTQVCI 439
             RKIFL  TIFGT LGMTQV +
Sbjct:   413 RKIFLVTTIFGTGLGMTQVIL 433

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0008517 "folic acid transporter activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0015231 "5-formyltetrahydrofolate transporter activity" evidence=IDA

GO:0015350 "methotrexate transporter activity" evidence=IDA

GO:0051958 "methotrexate transport" evidence=IDA

UNIPROTKB|Q55721 slr0642 "Folate-biopterin transporter" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 144/333 (43%), Positives = 199/333 (59%)

Query:   107 STPSKSSPHESRYLSNGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLD 166
             STP K    E   L N   +       +  A+  +YFVQGVLGL+RLAV+F+LKD+L L 
Sbjct:    15 STPLKRFLREKVLLGNAPSW-------ELLAILSIYFVQGVLGLSRLAVSFFLKDELGLS 67

Query:   167 PAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRXXXXXXXXXXXXXXXXMATIVESK 226
             PA    + G  + PW++KP+ G +SD++PLFGYRRR                 A  V S 
Sbjct:    68 PAAMGALIGLGAAPWILKPVLGLMSDTVPLFGYRRRSYLWLSGLMGSAGWLLFAAWVSSG 127

Query:   227 YXXXXXXXXXXXXXXFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG 286
                              DV+VDS+VVERA+ ES +  GSLQSL WG++A GGI+++Y SG
Sbjct:   128 TQAGLVLLFTSLSVAIGDVIVDSLVVERAQRESLAQVGSLQSLTWGAAAVGGIITAYASG 187

Query:   287 SMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ 346
             ++++ +  R VF +TA+ PL+T G A L+ E   +  +  +  P   P      K  +  
Sbjct:   188 ALLEWFSTRTVFAITAIFPLLTVGAAFLISE---VSTAEEEEKP--QP------KAQIKL 236

Query:   347 LWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGV 406
             +W+AV+Q  + LPTLF+F WQATP ++SA FYFTTNELGF P+FLGRV+ VTSVA L+GV
Sbjct:   237 VWQAVRQKTILLPTLFIFFWQATPSAESAFFYFTTNELGFEPKFLGRVRLVTSVAGLIGV 296

Query:   407 GLYNGFLKNVPLRKIFLANTIFGTALGMTQVCI 439
             GLY  FLK +P R I   +T+  + LG+T + +
Sbjct:   297 GLYQRFLKTLPFRVIMGWSTVISSLLGLTTLIL 329

GO:0008517 "folic acid transporter activity" evidence=IDA

GO:0015231 "5-formyltetrahydrofolate transporter activity" evidence=IMP;IDA

GO:0015350 "methotrexate transporter activity" evidence=IDA

GO:0015884 "folic acid transport" evidence=IDA

GO:0015885 "5-formyltetrahydrofolate transport" evidence=IMP;IDA

GO:0051958 "methotrexate transport" evidence=IDA

GENEDB_PFALCIPARUM|PF11_0172 PF11_0172 "folate/biopterin transporter, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 86/300 (28%), Positives = 147/300 (49%)

Query:   135 NFAVAMVYFV---QGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFIS 191
             +F   +VY V    G+  LA LA+ +  KD   L P + ++I  +  +P+++KP+   I+
Sbjct:    38 DFTQIVVYLVGLSDGLTHLASLAIYYLFKDYFRLTPYQVSLILMYPYIPFILKPVIALIT 97

Query:   192 DSLPLFGYRRRXXXXXXXXXXXXXXXXMATIVESKYXXXXXXXXXXXXXXFSDVVVDSMV 251
             DS  +FG RR+                +A +  S                F   V +++V
Sbjct:    98 DSFSIFGMRRKPYLFLFSLFQSLNFLALAFLNLSVIQASLILFFISLCASFCTTVAEALV 157

Query:   252 VERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGV 311
             VE + G++ S   +  +    S A G +  +YFSG  ++     ++F  T++ PLI S  
Sbjct:   158 VESSMGQTYSQGTNKVTEFIASKAIGSLSVAYFSGYFLEKMPREYIFIATSIFPLIISLS 217

Query:   312 AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMF-QLWEAVKQPN--VFL-PTLFVFLWQ 367
              + +KE++                   S+ +N+F QL + +K  N  +FL P L++F++ 
Sbjct:   218 CLFLKEKEY------------------STNRNIFNQLSDLIKFINTPIFLGPFLYIFVYM 259

Query:   368 ATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTI 427
             + P  D A F+F TN+LGF P F+G ++    +ASL+G+ +Y  FLKN  LRK  +  T+
Sbjct:   260 SGPDYDDAFFFFCTNKLGFRPSFMGTLRLTYGIASLIGIIIYRVFLKNCSLRKTLIITTL 319

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IIK1 PF11_0172 "Folate/biopterin transporter, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 86/300 (28%), Positives = 147/300 (49%)

Query:   135 NFAVAMVYFV---QGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFIS 191
             +F   +VY V    G+  LA LA+ +  KD   L P + ++I  +  +P+++KP+   I+
Sbjct:    38 DFTQIVVYLVGLSDGLTHLASLAIYYLFKDYFRLTPYQVSLILMYPYIPFILKPVIALIT 97

Query:   192 DSLPLFGYRRRXXXXXXXXXXXXXXXXMATIVESKYXXXXXXXXXXXXXXFSDVVVDSMV 251
             DS  +FG RR+                +A +  S                F   V +++V
Sbjct:    98 DSFSIFGMRRKPYLFLFSLFQSLNFLALAFLNLSVIQASLILFFISLCASFCTTVAEALV 157

Query:   252 VERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGV 311
             VE + G++ S   +  +    S A G +  +YFSG  ++     ++F  T++ PLI S  
Sbjct:   158 VESSMGQTYSQGTNKVTEFIASKAIGSLSVAYFSGYFLEKMPREYIFIATSIFPLIISLS 217

Query:   312 AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMF-QLWEAVKQPN--VFL-PTLFVFLWQ 367
              + +KE++                   S+ +N+F QL + +K  N  +FL P L++F++ 
Sbjct:   218 CLFLKEKEY------------------STNRNIFNQLSDLIKFINTPIFLGPFLYIFVYM 259

Query:   368 ATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTI 427
             + P  D A F+F TN+LGF P F+G ++    +ASL+G+ +Y  FLKN  LRK  +  T+
Sbjct:   260 SGPDYDDAFFFFCTNKLGFRPSFMGTLRLTYGIASLIGIIIYRVFLKNCSLRKTLIITTL 319

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160150 AT5G54860 "AT5G54860" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 3.0e-26, Sum P(2) = 3.0e-26
 Identities = 61/205 (29%), Positives = 92/205 (44%)

Query:   138 VAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLF 197
             V ++YF QG       AV++ LKD L L P+ +  +   +  PW IKPLYG ISD +P+ 
Sbjct:    20 VCLIYFTQGFRSFVWTAVSYQLKDRLQLSPSASQFVFSVAFFPWSIKPLYGIISDCIPIG 79

Query:   198 GYRRRXXXXXXXXXXXXXXXXM---ATIVESKYXXXXXXXXXXXXXXFSDVVVDSMVVER 254
             G +R                 +   +T   S                 +DVV+D+M+ E 
Sbjct:    80 GKKRTPYLVISTVLSLVPWLVLGLDSTSRSSSLYLMIFLTVQNLGSAMADVVIDAMIAEA 139

Query:   255 ARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVL 314
              R E  S +G LQS+ W + A GG+  S   G  +    +  +F +  +LP +      L
Sbjct:   140 VRLEKASFAGDLQSVSWFAMAVGGVCGSLLGGYALSNLKIETIFLLFTVLPALQLLSCAL 199

Query:   315 VKEQQVLGPSRRQNLP-LGDPSFFE 338
             V+E     P+  + LP L D + FE
Sbjct:   200 VEES----PANNEPLPELLDSNEFE 220

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2017814 AT1G79710 "AT1G79710" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 3.3e-25, P = 3.3e-25
 Identities = 80/293 (27%), Positives = 138/293 (47%)

Query:   136 FAVAMVYFV-QGV-LGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDS 193
             F V +VY V QG+  GL++++  +Y KD+  + P++  +  G   +PW+IKPL+G ++D 
Sbjct:    51 FGVIIVYGVSQGLGKGLSKVSTQYYFKDEQKIQPSQAQIYVGLIQIPWIIKPLWGLLTDV 110

Query:   194 LPLFGYRRRXXXXXXXXXXXXXXXXMATIVESKYXXXXX-XXXXXXXXXFSDVVVDSMVV 252
             +P+ GYRRR                +                        +DV +D+ V 
Sbjct:   111 VPVLGYRRRPYFILAGFLAMISMMVLWLHTNLHLALALSCLVAGSAGVAIADVTIDACVT 170

Query:   253 ERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVA 312
             + +     +++  +QSLC   S+ G +V    SG +V   G + V+G+      +T+G+ 
Sbjct:   171 QCSISHP-TLAADMQSLCGLCSSIGSLVGFSLSGVLVHLVGSKGVYGLLG----VTAGLL 225

Query:   313 VLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP-H 371
             V+V       PSR       +  F ++       +W+  +   V+ P LF+ L  A   H
Sbjct:   226 VVVGMVLKESPSRSLGRKHVNDKFLDAGSA----IWKTFQYGEVWRPCLFMLLSAAVSLH 281

Query:   372 SDSAMFY-FTTNELG--FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKI 421
                 MFY +T ++ G  F+ E +G +    ++ SL+G+ LY  FLKN P R +
Sbjct:   282 IHEGMFYWYTDSKDGPSFSKEAVGSIMSFGAIGSLVGILLYQNFLKNFPFRNV 334

GO:0005215 "transporter activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2179285 AT5G25050 "AT5G25050" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 1.9e-23, P = 1.9e-23
 Identities = 81/311 (26%), Positives = 147/311 (47%)

Query:   136 FAVAMVYFV-QGVLG-LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDS 193
             F V  +Y + QG+ G L R+A  +Y+KD   + P+E+  ++  + +PW+IKPL+G ++D 
Sbjct:    47 FGVVSLYGINQGLGGSLGRVATEYYMKDVQKVQPSESQALTAITKIPWIIKPLWGILTDV 106

Query:   194 LPLFGYRRRXXXXXXXXXXXXXXXXMATIVESK-YXXXXXXXXXXXXXXFSDVVVDSMVV 252
             LP+FG+ RR                ++       Y               +DV +D+   
Sbjct:   107 LPIFGFHRRPYFILAGVLGVVSLLFISLHSNLHLYLALFWMTISSAAMAIADVTIDACTA 166

Query:   253 ERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVA 312
               +  +  S++  +QSLC  SS+ G ++  + SG +V   G + VFG+      + S V 
Sbjct:   167 YNSI-KHPSLASDMQSLCSLSSSIGALLGFFMSGILVHLVGSKGVFGLLTFPFALVSVVG 225

Query:   313 VLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP-H 371
             ++  E  V G S +Q     +  F ++ K     +W  +K  +V+ P+L++++      +
Sbjct:   226 IVFSEPHVPGFSYKQV----NQKFTDAGKA----MWRTMKCSDVWRPSLYMYISLTLGLN 277

Query:   372 SDSAMFY-FTTNELG--FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIF 428
                 +FY FT ++ G  F  E +G +  + S+ S+L   LY   LK+ P R + L   + 
Sbjct:   278 IHEGLFYWFTDSKDGPLFAQETVGFILSIGSIGSILAATLYQLVLKDHPFRGLCLWTQLL 337

Query:   429 GTALGMTQVCI 439
                 GM  + +
Sbjct:   338 FALSGMLDLIL 348

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GENEDB_PFALCIPARUM|MAL8P1.13 MAL8P1.13 "integral membrane protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 270 (100.1 bits), Expect = 3.3e-21, P = 3.3e-21
 Identities = 74/296 (25%), Positives = 138/296 (46%)

Query:   139 AMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFG 198
             +++  +QGV  L  L++ + LKD+ HL PA  +++  F  +PW IK ++  ISD+ P+FG
Sbjct:    58 SLIAMLQGVEVLCNLSIIYLLKDNYHLHPASLSIVMCFIKIPWSIKLVWAVISDNYPIFG 117

Query:   199 YRRRXXXXXXXXXXXXXXXXMATIVESK-YXXXXXXXXXXXXXXFSDVVVDSMVVERARG 257
             YRR+                +  I  +  +                +V+ ++ VVE  R 
Sbjct:   118 YRRKYYLLLGSFLCILSLICLGLITHNNLFITILLLFIYFFGSSLCNVIGEAQVVESNRN 177

Query:   258 ESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPL--ITSGVAVLV 315
              S + S    SL +        + SY SG ++     + +F + + LP+   TSG  ++ 
Sbjct:   178 CSINSSARNVSLFFAFRKLSFAIMSYLSGYLLLLISKKHIFLIGSFLPICVFTSGFFIIE 237

Query:   316 KEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ-LWEAVKQPNVFLPTLFVFLWQATPHSDS 374
             K                  ++ +SS ++  + ++  +K   +    +F+F+  +TP   +
Sbjct:   238 KR-----------------NYTKSSIKDQIKCIYSIIKLSYLKNFIIFIFIMMSTPSCGN 280

Query:   375 AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGT 430
              +F++ TNEL F+P  LG++    S+AS + +  Y  F   + +RK+ L +TI  T
Sbjct:   281 TLFFYITNELKFSPNLLGKMAMFQSLASFISIISYMLFFTKIDIRKLLLYSTIIIT 336

GO:0016021 "integral to membrane" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IBB7 MAL8P1.13 "Folate/biopterin transporter, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 270 (100.1 bits), Expect = 3.3e-21, P = 3.3e-21
 Identities = 74/296 (25%), Positives = 138/296 (46%)

Query:   139 AMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFG 198
             +++  +QGV  L  L++ + LKD+ HL PA  +++  F  +PW IK ++  ISD+ P+FG
Sbjct:    58 SLIAMLQGVEVLCNLSIIYLLKDNYHLHPASLSIVMCFIKIPWSIKLVWAVISDNYPIFG 117

Query:   199 YRRRXXXXXXXXXXXXXXXXMATIVESK-YXXXXXXXXXXXXXXFSDVVVDSMVVERARG 257
             YRR+                +  I  +  +                +V+ ++ VVE  R 
Sbjct:   118 YRRKYYLLLGSFLCILSLICLGLITHNNLFITILLLFIYFFGSSLCNVIGEAQVVESNRN 177

Query:   258 ESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPL--ITSGVAVLV 315
              S + S    SL +        + SY SG ++     + +F + + LP+   TSG  ++ 
Sbjct:   178 CSINSSARNVSLFFAFRKLSFAIMSYLSGYLLLLISKKHIFLIGSFLPICVFTSGFFIIE 237

Query:   316 KEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ-LWEAVKQPNVFLPTLFVFLWQATPHSDS 374
             K                  ++ +SS ++  + ++  +K   +    +F+F+  +TP   +
Sbjct:   238 KR-----------------NYTKSSIKDQIKCIYSIIKLSYLKNFIIFIFIMMSTPSCGN 280

Query:   375 AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGT 430
              +F++ TNEL F+P  LG++    S+AS + +  Y  F   + +RK+ L +TI  T
Sbjct:   281 TLFFYITNELKFSPNLLGKMAMFQSLASFISIISYMLFFTKIDIRKLLLYSTIIIT 336

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

TAIR|locus:2010911 AT1G64890 "AT1G64890" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 73/298 (24%), Positives = 130/298 (43%)

Query:   132 SPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFIS 191
             +P  + +   +FVQG  G   L  NF+L + L ++P+   ++   ++LP + KP+YG +S
Sbjct:    17 NPIRWLLGFGFFVQGFRGFPWLGANFFLTEQLRVNPSVLQLLQNSANLPMVAKPIYGVVS 76

Query:   192 DSLPLFGYRRRXXXXXXXXXXXXXXXXMATIVESKYXXXXXXXXXXXX---XXFSDVVVD 248
             DS+  FG  R                 +A +  S                     +V  D
Sbjct:    77 DSVYFFGQHRIPYIAVGALLQAISWLAIAFLSRSNVSILALSIYLLLSNLGASLVEVAND 136

Query:   249 SMVVERARGE-SQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI 307
             ++V E  + + S++ SG L S  W  S+ GGI+ +   G  +  +  +  F V  +L L+
Sbjct:   137 AIVAESGKQKTSETQSGELPSFVWMVSSLGGILGNLLGGIAIKTFSAQSTFLVFGILALL 196

Query:   308 TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQ 367
                V + ++E+ +       NLP  +PS     ++++  L   +++P +     ++ +  
Sbjct:   197 QFLVTINIREKSL-------NLP-ENPSPAGGIRKHLSDLSHVLRKPEISYSIAWIAVST 248

Query:   368 AT-PHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLA 424
             A  P     MF++ T  L      LG  K    +A LL    YN +LK +  RK+  A
Sbjct:   249 AVVPVLTGTMFFYQTKFLKIDASLLGISKVFGQIAMLLWGFAYNRWLKAMRPRKLLTA 306

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SKZ5	FBT1_ARATH	No assigned EC number	0.6990	0.9636	0.7571	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020014001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (559 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00035640001	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (118 aa)			•						0.499
	GSVIVG00026973001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (166 aa)			•						0.496
	GSVIVG00002625001	SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (149 aa)			•						0.494
	GSVIVG00007397001	SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (251 aa)			•						0.493
	GSVIVG00027603001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (254 aa)			•						0.492
	GSVIVG00009465001	SubName- Full=Chromosome undetermined scaffold_235, whole genome shotgun sequence; (234 aa)			•						0.492
	GSVIVG00034898001	SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (285 aa)			•						0.491
	GSVIVG00020301001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (293 aa)			•						0.486
	GSVIVG00015682001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (381 aa)			•						0.483
	GSVIVG00026573001	SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (245 aa)			•						0.477

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	440
TIGR00788	468	TIGR00788, fbt, folate/biopterin transporter	1e-106
pfam03092	425	pfam03092, BT1, BT1 family	3e-99
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-05
TIGR02718	390	TIGR02718, sider_RhtX_FptX, siderophore transporte	4e-05

>gnl|CDD|233127 TIGR00788, fbt, folate/biopterin transporter

 Score =  323 bits (829), Expect = e-106
 Identities = 119/320 (37%), Positives = 166/320 (51%), Gaps = 8/320 (2%)

Query: 127 FGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPL 186
           F             V FV+G+ GL RL ++  L DDL LD A    + G SSL W +KP 
Sbjct: 20  FSFHPRVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF 79

Query: 187 YGFISDSLPLFGYRRRSYLVLSGLLG-ALSWSLMATIVESKYSAALSILLGSLSVAFSDV 245
            G +SD+ PLFGY +R YLVLSGLLG A+ + L+   V S   AA  I L +L+ A  DV
Sbjct: 80  AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDV 139

Query: 246 VVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLP 305
           +VDS+  ER R ES S   SL S  WG+SA GG++SS   G ++D    R +F +TA L 
Sbjct: 140 LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALL 198

Query: 306 LITSGVAVLVKEQQVLGPSR-----RQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPT 360
           L+   V+ L KE++     R       N+ L       + K  +  L  A++   +  P 
Sbjct: 199 LLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPL 258

Query: 361 LFVFL-WQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLR 419
           +F+FL +   P +  ++F  TT  L   P F G  K V ++ SL GVG Y+ FLK  P R
Sbjct: 259 IFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR 318

Query: 420 KIFLANTIFGTALGMTQVCI 439
            +F   T+  T   +  + +
Sbjct: 319 LLFGVTTLLYTLSSLFDLIL 338

The Folate-Biopterin Transporter (FBT) Family (TC 2.A.71)The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity [Cell envelope, Other]. Length = 468

>gnl|CDD|111933 pfam03092, BT1, BT1 family

 Score =  303 bits (777), Expect = 3e-99
 Identities = 128/304 (42%), Positives = 168/304 (55%), Gaps = 15/304 (4%)

Query: 145 QGVLG-LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRS 203
           QGV G L+RL+  F LKD L +DPA    +SG ++LPW+IKP  G +SD   LFGYRRR 
Sbjct: 1   QGVAGGLSRLSTQFMLKDRLGIDPARYQRLSGLATLPWVIKPFTGVLSDGFALFGYRRRP 60

Query: 204 YLVLSGLLG---ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQ 260
           YL LSGLLG   ALS+ L+     S   AA  I L SL  A  DV+ D++  ER R E  
Sbjct: 61  YLALSGLLGGAFALSYGLLPAKESSAAVAAAFIFLSSLGKALVDVLSDALYSERGRQEPL 120

Query: 261 SVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQV 320
           +   SL S  WG SA GGI+ S  SG ++D +  +  F VTA L L+T   A ++KE++V
Sbjct: 121 A-GPSLVSWIWGCSAVGGIIGSVLSGPLLDTFKPQISFLVTAALQLLTCVDAAVLKEEEV 179

Query: 321 LGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFV-FLWQATPHSDSA-MFY 378
           LG  R        P     +++ + + W+A + P +  PTL     W A      A MFY
Sbjct: 180 LGLGRPPV-----PCLLGLNREVISRNWKAFRYPEILAPTLTWISFWAAPLVIAKADMFY 234

Query: 379 FTTNELG---FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMT 435
           + TNELG   F+  F G VK + S+A LLGV LYN FLK  P R  F   T+     G+ 
Sbjct: 235 YQTNELGGPNFSYSFYGTVKVIGSIAGLLGVTLYNRFLKKHPYRLTFGVTTVLQVLSGLF 294

Query: 436 QVCI 439
            + +
Sbjct: 295 DLIL 298

Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters. One such protein, previously termed (and is still annotated as) ORFG, was shown to encode a biopterin transport protein using null mutants, thus being subsequently renamed BT1. The significant similarity of ORFG/BT1 to Trypanosoma brucei ESAG10 (a putative transmembrane protein and another member of this family) was previously noted. This family also contains five putative Arabidopsis thaliana proteins of unknown function. In addition, it also contains two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). Length = 425

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 58/300 (19%), Positives = 107/300 (35%), Gaps = 21/300 (7%)

Query: 136 FAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETA-VISGFSSLPWLIKPLYGFISDSL 194
            A  +    + +LG A   +  YL +DL + P E   +++ FS    L +PL G +SD  
Sbjct: 3   LAAFLAGLGRSLLGPA---LPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDR- 58

Query: 195 PLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVER 254
               + RR  L++  LL AL   L+           L +L G L          +++ + 
Sbjct: 59  ----FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG-LGGGALFPAAAALIADW 113

Query: 255 ARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVL 314
              E +  +  L S  +G    G  +     G +   +G R  F + A+L L+ + +A L
Sbjct: 114 FPPEERGRALGLLSAGFG---LGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL 170

Query: 315 VKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDS 374
           +          R       P   E +   +   W+ + +  V    L + L+     +  
Sbjct: 171 LL--------PRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALL 222

Query: 375 AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGM 434
                    LG +    G +  +  +   +G  L       +  R+  L   +      +
Sbjct: 223 TYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAAL 282

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 13/182 (7%)

Query: 138 VAMVYFVQGVLGLARLAVNFYL---KDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDS 193
           + +++    + GL R  ++  L    +DL L  ++  +I    SL + +   L G++SD 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD- 59

Query: 194 LPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVE 253
              FG RR   ++L GLL     SL+     S +   +   L  L          +++ E
Sbjct: 60  --RFGRRR---VLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114

Query: 254 RARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAV 313
               + +  +  L S  +G    G ++     G + ++ G R++F + A+L L+ + + +
Sbjct: 115 WFPPKERGRALGLFSAGFG---LGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL 171

Query: 314 LV 315
            +
Sbjct: 172 FL 173

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 9/160 (5%)

Query: 158 YLKDDLHLDPAETAVISGFSSLP-WLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSW 216
           YL++ L L  AE  ++     L   L   L G +SD L     RRR  L++  LL AL  
Sbjct: 201 YLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG----RRRLLLLIGLLLAALGL 256

Query: 217 SLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAF 276
            L+A            +LLG   + F+   + ++  E A        G+   L     + 
Sbjct: 257 LLLALAPSLALLLVALLLLG-FGLGFAFPALLTLASELA---PPEARGTASGLFNTFGSL 312

Query: 277 GGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVK 316
           GG +    +G ++D  G   VF + A L L+ + + +L+ 
Sbjct: 313 GGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|131765 TIGR02718, sider_RhtX_FptX, siderophore transporter, RhtX/FptX family

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 59/282 (20%), Positives = 108/282 (38%), Gaps = 37/282 (13%)

Query: 138 VAMVYFVQGV-LGLARLAVNFYLKDDLHLDPAETAVISGFS--SLPWLIKPLYGFISD-- 192
           + ++Y  QG+ +GLA  A+   L++D     A    ++      LPW++K L+  + D  
Sbjct: 6   LGLLYLSQGIPIGLAMDALPTLLRED----GAPLTALAFLPLVGLPWVVKFLWAPLVDNW 61

Query: 193 -SLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSI---LLGSLSVAFSDVVVD 248
            S  L   RRRS+++    L +   + +A +      A  ++      SL+ A  D+  D
Sbjct: 62  WSWRL--GRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATD 119

Query: 249 SMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLIT 308
            M  E   G + +   ++Q         G       +  +   +G R  F + A +PL +
Sbjct: 120 GMAAEHFNGRTLAKGNAVQI---AGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLAS 176

Query: 309 SGVAVLVKEQQV--LGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLW 366
               + +K++ V        +   L    FF              ++P  +       L 
Sbjct: 177 LVCVLWLKDRAVASPEAPLARRASLF--RFF--------------RRPLAWSLLALALLS 220

Query: 367 QATPHSDSAMFYFTTNELGFTPEFLGRVKFVTS-VASLLGVG 407
             T  S   +      + G+  E++GR+      V  LLG G
Sbjct: 221 AMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCG 262

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes [Transport and binding proteins, Cations and iron carrying compounds]. Length = 390

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	440
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.96
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.95
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.94
PRK11010	491	ampG muropeptide transporter; Validated	99.93
PRK11902	402	ampG muropeptide transporter; Reviewed	99.92
PRK03545	390	putative arabinose transporter; Provisional	99.92
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.92
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.91
PRK10091	382	MFS transport protein AraJ; Provisional	99.91
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.91
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.91
TIGR00891	405	2A0112 putative sialic acid transporter.	99.91
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.91
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.91
PRK11663	434	regulatory protein UhpC; Provisional	99.91
TIGR00901	356	2A0125 AmpG-related permease.	99.91
PRK12307	426	putative sialic acid transporter; Provisional	99.91
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.9
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.9
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.9
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.9
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.9
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.9
PRK10133	438	L-fucose transporter; Provisional	99.9
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.9
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.9
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.9
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.9
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.9
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.89
TIGR00893	399	2A0114 d-galactonate transporter.	99.89
PRK10642	490	proline/glycine betaine transporter; Provisional	99.89
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.89
PRK09705	393	cynX putative cyanate transporter; Provisional	99.89
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.89
PRK10504	471	putative transporter; Provisional	99.89
PRK11043	401	putative transporter; Provisional	99.89
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.88
PLN00028	476	nitrate transmembrane transporter; Provisional	99.88
PRK10489	417	enterobactin exporter EntS; Provisional	99.88
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.88
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.88
PRK03699	394	putative transporter; Provisional	99.88
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.88
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.88
PRK10054	395	putative transporter; Provisional	99.88
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.88
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.87
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.87
PRK05122	399	major facilitator superfamily transporter; Provisi	99.87
TIGR00895	398	2A0115 benzoate transport.	99.87
PRK12382	392	putative transporter; Provisional	99.87
PRK03633	381	putative MFS family transporter protein; Provision	99.87
PRK15011	393	sugar efflux transporter B; Provisional	99.87
PRK03893	496	putative sialic acid transporter; Provisional	99.86
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.86
PRK09952	438	shikimate transporter; Provisional	99.86
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.86
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.86
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.86
TIGR00805	633	oat sodium-independent organic anion transporter.	99.86
PRK09874	408	drug efflux system protein MdtG; Provisional	99.86
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.86
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.86
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.86
PRK15075	434	citrate-proton symporter; Provisional	99.85
KOG2533	495	consensus Permease of the major facilitator superf	99.84
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.84
PRK09669	444	putative symporter YagG; Provisional	99.84
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.83
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.83
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.83
PRK10429	473	melibiose:sodium symporter; Provisional	99.83
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.83
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.83
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.83
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.83
PRK09528	420	lacY galactoside permease; Reviewed	99.83
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.82
COG2211	467	MelB Na+/melibiose symporter and related transport	99.82
PF13347	428	MFS_2: MFS/sugar transport protein	99.81
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.81
PRK11462	460	putative transporter; Provisional	99.81
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.81
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.81
TIGR00898	505	2A0119 cation transport protein.	99.81
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.8
KOG0569	485	consensus Permease of the major facilitator superf	99.78
KOG2532	466	consensus Permease of the major facilitator superf	99.77
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.76
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.76
PRK09848	448	glucuronide transporter; Provisional	99.75
KOG0254	513	consensus Predicted transporter (major facilitator	99.75
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.75
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.73
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.72
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.7
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.69
KOG2615	451	consensus Permease of the major facilitator superf	99.69
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.67
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.66
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.65
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.63
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.62
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.62
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.58
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.58
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.54
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.53
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.51
PRK15011	393	sugar efflux transporter B; Provisional	99.47
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.47
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.45
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.44
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.44
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.43
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.43
PTZ00207	591	hypothetical protein; Provisional	99.42
PRK11663	434	regulatory protein UhpC; Provisional	99.41
PRK09528	420	lacY galactoside permease; Reviewed	99.4
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.39
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.37
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.37
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.36
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.36
PRK10642	490	proline/glycine betaine transporter; Provisional	99.36
KOG2563	480	consensus Permease of the major facilitator superf	99.35
PRK10489	417	enterobactin exporter EntS; Provisional	99.35
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.35
KOG3626	735	consensus Organic anion transporter [Secondary met	99.35
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.34
TIGR00893	399	2A0114 d-galactonate transporter.	99.34
PRK03699	394	putative transporter; Provisional	99.34
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.33
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.33
PRK09874	408	drug efflux system protein MdtG; Provisional	99.32
PRK03545	390	putative arabinose transporter; Provisional	99.32
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.31
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.31
PRK05122	399	major facilitator superfamily transporter; Provisi	99.3
PRK03633	381	putative MFS family transporter protein; Provision	99.3
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.28
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.28
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	99.25
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.23
PRK09705	393	cynX putative cyanate transporter; Provisional	99.23
PRK09952	438	shikimate transporter; Provisional	99.22
PRK10504	471	putative transporter; Provisional	99.21
PRK11010	491	ampG muropeptide transporter; Validated	99.2
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.2
PRK12382	392	putative transporter; Provisional	99.2
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.2
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.2
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.18
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.18
PRK03893	496	putative sialic acid transporter; Provisional	99.17
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.17
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.17
PLN00028	476	nitrate transmembrane transporter; Provisional	99.16
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.16
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.15
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.13
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.13
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.13
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.13
TIGR00891	405	2A0112 putative sialic acid transporter.	99.11
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.11
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.08
PRK10054	395	putative transporter; Provisional	99.08
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.08
KOG2532	466	consensus Permease of the major facilitator superf	99.07
PRK11902	402	ampG muropeptide transporter; Reviewed	99.07
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	99.05
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.05
TIGR00900	365	2A0121 H+ Antiporter protein.	99.05
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.04
PRK15075	434	citrate-proton symporter; Provisional	99.03
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.02
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.02
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.02
PRK10091	382	MFS transport protein AraJ; Provisional	99.01
KOG0637	498	consensus Sucrose transporter and related proteins	99.01
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.99
PRK12307	426	putative sialic acid transporter; Provisional	98.97
TIGR00895	398	2A0115 benzoate transport.	98.96
KOG0569	485	consensus Permease of the major facilitator superf	98.95
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.95
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.94
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.92
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.92
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.92
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.91
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.91
TIGR00898	505	2A0119 cation transport protein.	98.9
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.86
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.86
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.86
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.84
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.83
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.83
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.82
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.81
PRK10133	438	L-fucose transporter; Provisional	98.79
PF13347	428	MFS_2: MFS/sugar transport protein	98.77
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.76
PRK09848	448	glucuronide transporter; Provisional	98.76
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.75
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.74
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.67
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.62
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.6
PRK09669	444	putative symporter YagG; Provisional	98.57
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.57
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.56
PRK11043	401	putative transporter; Provisional	98.56
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.55
TIGR00901	356	2A0125 AmpG-related permease.	98.55
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.47
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.45
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.44
PRK10429	473	melibiose:sodium symporter; Provisional	98.4
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.37
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.33
KOG3762	618	consensus Predicted transporter [General function	98.32
COG2211	467	MelB Na+/melibiose symporter and related transport	98.26
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.24
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.23
COG0477	338	ProP Permeases of the major facilitator superfamil	98.22
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.21
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.21
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.15
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.12
KOG2533	495	consensus Permease of the major facilitator superf	98.09
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.07
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.02
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.99
PRK11462	460	putative transporter; Provisional	97.95
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.86
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.81
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.76
PF12832	77	MFS_1_like: MFS_1 like family	97.76
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.75
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.63
KOG0254	513	consensus Predicted transporter (major facilitator	97.63
COG3202	509	ATP/ADP translocase [Energy production and convers	97.52
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.51
PTZ00207	591	hypothetical protein; Provisional	97.09
PF12832	77	MFS_1_like: MFS_1 like family	97.08
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.01
KOG2615	451	consensus Permease of the major facilitator superf	97.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.89
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.79
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	96.7
KOG3762	618	consensus Predicted transporter [General function	96.42
PRK03612	521	spermidine synthase; Provisional	96.36
KOG3810	433	consensus Micronutrient transporters (folate trans	96.23
KOG2563	480	consensus Permease of the major facilitator superf	96.15
PRK15462	493	dipeptide/tripeptide permease D; Provisional	96.07
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.89
KOG2816	463	consensus Predicted transporter ADD1 (major facili	95.82
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.77
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.7
TIGR00805	633	oat sodium-independent organic anion transporter.	95.19
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	94.83
KOG1330	493	consensus Sugar transporter/spinster transmembrane	94.82
KOG2325	488	consensus Predicted transporter/transmembrane prot	94.81
KOG3097	390	consensus Predicted membrane protein [Function unk	94.69
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	94.59
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.25
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	94.01
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.81
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	92.27
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	90.58
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	89.92
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	88.55
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	88.4
KOG3626	735	consensus Organic anion transporter [Secondary met	88.34
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	86.22
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	85.36
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	85.06
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	83.42
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	82.75
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	82.54
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	81.3
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	80.4

>TIGR00788 fbt folate/biopterin transporter

Probab=99.96  E-value=7.4e-27  Score=233.91  Aligned_cols=314  Identities=37%  Similarity=0.521  Sum_probs=240.0

Q ss_pred             cCCCcccccccCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHHHhhhhhhccccCcCCC
Q 013568          120 LSNGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGY  199 (440)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~g~l~Dr~~~~G~  199 (440)
                      +.++++.+.........++...|+.+|+.++....+++++++++|++.++++.+.++..+++.++|++|+++||++++|+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~   92 (468)
T TIGR00788        13 FLGYIPVFSFHPRVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGY   92 (468)
T ss_pred             HhhccccccCCcchHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            33344444333333455677789999998888889999999989999999999999999999999999999999999998


Q ss_pred             CcchhhhHHHHHHH-HHHHHHHhhhch-hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhH
Q 013568          200 RRRSYLVLSGLLGA-LSWSLMATIVES-KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFG  277 (440)
Q Consensus       200 ~rr~~l~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g  277 (440)
                      |||++++++.++.. ++...++ ..++ .....+++++.+++.+..+++..++..|..+ +++....++.+..+.+.++|
T Consensus        93 rRr~~l~~~~~l~~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G  170 (468)
T TIGR00788        93 TKRWYLVLSGLLGSAILYGLLP-GKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATG  170 (468)
T ss_pred             cchHHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHH
Confidence            88998888876663 4433333 2233 3344457899999999999999999999999 66666667777777766689


Q ss_pred             HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCC-----CCCCccchhhHHHHHHHHHHhc
Q 013568          278 GIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLP-----LGDPSFFESSKQNMFQLWEAVK  352 (440)
Q Consensus       278 ~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~  352 (440)
                      .++|+.++|++.+.++|+..|++.+++.++..+..++++|++.....+..+..     ....+..+..++..++.++.++
T Consensus       171 ~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  250 (468)
T TIGR00788       171 GLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQ  250 (468)
T ss_pred             HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999988887776666778886421111100000     0000111123444567778889


Q ss_pred             CcchhhhHHHHHh-hhccccccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          353 QPNVFLPTLFVFL-WQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       353 ~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      +|.++..+++.++ |.........++++..+.+|+++.++|.+..+.+++.++|..+.+++.+|++.|+++.++.++.++
T Consensus       251 ~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~  330 (468)
T TIGR00788       251 LLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTL  330 (468)
T ss_pred             cHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence            9999998888888 766555555556666678999999999999999999999999999999999999999998888877


Q ss_pred             Hhhh
Q 013568          432 LGMT  435 (440)
Q Consensus       432 ~~~~  435 (440)
                      ..+.
T Consensus       331 ~~~~  334 (468)
T TIGR00788       331 SSLF  334 (468)
T ss_pred             HHhC
Confidence            6544

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.4e-25  Score=212.77  Aligned_cols=271  Identities=17%  Similarity=0.156  Sum_probs=221.5

Q ss_pred             cHHHHHHHHHHHHHhh-hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVLG-LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .++.+.+..|+.+... .....+|+ +.+++|+|..++|+..+++.+++.+ .|+...+.||+     .||++++....+
T Consensus        14 ~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-----~Rr~lLl~~l~l   87 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-----ERRRLLLGLLAL   87 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----chHHHHHHHHHH
Confidence            5667778888888874 44445555 4555999999999999999999999 89999999995     699999999999


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc
Q 013568          212 GALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA  291 (440)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~  291 (440)
                      +.++.++.+ ++++++.+++.|++.|+..|...+...++..++.|+++|+++.++...+..   ++.++|..++.++-+.
T Consensus        88 Fi~~n~l~a-lAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~t---lA~v~GvPLGt~ig~~  163 (394)
T COG2814          88 FIVSNLLSA-LAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLT---LATVLGVPLGTFLGQL  163 (394)
T ss_pred             HHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHH---HHHHHhccHHHHHHHH
Confidence            999999888 899999999999999999999999999999999999999999999988888   9999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccc
Q 013568          292 YGVRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP  370 (440)
Q Consensus       292 ~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~  370 (440)
                      +|||+.|+..++++++.++ .+..+|  +...++.              .....++..+.+|+|.++...+..++...  
T Consensus       164 ~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~--------------~~~~~~~~~~~l~~p~v~~~l~~t~l~~~--  225 (394)
T COG2814         164 FGWRATFLAIAVLALLALLLLWKLLP--PSEISGS--------------LPGPLRTLLRLLRRPGVLLGLLATFLFMT--  225 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCC--------------CCcchhHHHHHhcCchHHHHHHHHHHHHc--
Confidence            9999999999999988777 556778  1111111              11233456688999999888776666544  


Q ss_pred             cccceeee----eeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhh
Q 013568          371 HSDSAMFY----FTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGM  434 (440)
Q Consensus       371 ~~~~~~~~----~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~  434 (440)
                       .....|.    +..+..|++...++++...++++.++|..++|++.|| +.|+.+.....+.++..+
T Consensus       226 -g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l  291 (394)
T COG2814         226 -GHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALL  291 (394)
T ss_pred             -chhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHH
Confidence             2222222    2337889999999999999999999999999999999 777777776555544433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=3.1e-25  Score=207.83  Aligned_cols=292  Identities=14%  Similarity=0.092  Sum_probs=222.1

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .++.+.++|...++. -.+..+.|..++| .++|.++.|.+.+++.+.|.+ +.+.|.++||.     +.|.++.+++++
T Consensus        30 if~~~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-----npr~fm~~gLil  103 (448)
T COG2271          30 IFLSIFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-----NPRYFMAFGLIL  103 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-----CCceeehHHHHH
Confidence            456677888877776 5777677766665 789999999999999999999 88999999993     588899999999


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHH--HHhh
Q 013568          212 GALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS--GSMV  289 (440)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~--g~l~  289 (440)
                      .+++.++++ +.++...+.++.++.|++.|.-.+++...+..++++++||+..++++.+..   +|+.+.|++.  +++.
T Consensus       104 sai~nil~G-fs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shN---iGGal~~~~~~la~~~  179 (448)
T COG2271         104 SAIVNILFG-FSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHN---IGGALAPLVALLAFFA  179 (448)
T ss_pred             HHHHHHHHh-hhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhh---cccchHHHHHHHHHHH
Confidence            999999999 777888999999999999999999999999999999999999999987777   9999999999  8898


Q ss_pred             hccchHHHHHHHHHHHHHHHH-hheeeccccccCCCcC----CCCCCCC-Cccchhh-HHHHHH-HHHHhcCcchhhhHH
Q 013568          290 DAYGVRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRR----QNLPLGD-PSFFESS-KQNMFQ-LWEAVKQPNVFLPTL  361 (440)
Q Consensus       290 ~~~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~----~~~~~~~-~~~~~~~-~~~~~~-~~~~l~~~~~~~~~l  361 (440)
                      .+.+||..|++.++++++..+ .++..+++|...-...    +++..+. ++..+.. ...++. ..-+++||.+|.+++
T Consensus       180 ~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~  259 (448)
T COG2271         180 FHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLAL  259 (448)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHH
Confidence            888999999999998887666 4556777665311100    0000000 0000110 111122 334689999998874


Q ss_pred             -HHHhhhccccccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccC--CchhHHHHHHHHHHHHhhh
Q 013568          362 -FVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNV--PLRKIFLANTIFGTALGMT  435 (440)
Q Consensus       362 -~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~--g~r~~l~~~~~~~~~~~~~  435 (440)
                       .+++|..-+....-.+.|+.+..|++...++.....+-++.+.|.+++||++||+  |||...-+...+...++++
T Consensus       260 a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~  336 (448)
T COG2271         260 ANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLV  336 (448)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence             4444555333344445566689999999999999999999999999999999996  5666655544444444433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.93  E-value=1e-23  Score=212.77  Aligned_cols=280  Identities=17%  Similarity=0.211  Sum_probs=207.6

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHHHhhhhhhcccc--CcCCCCcchhhhHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSL--PLFGYRRRSYLVLSGL  210 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~g~l~Dr~--~~~G~~rr~~l~~~~~  210 (440)
                      +.+.+++.++.++.. ......+|.++++ .|.+..++|.. +....++..++++|+++||+  +++| |||++++.+.+
T Consensus        13 ~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~-~~~~~~~~~~~l~gpl~Dr~~~~~~G-rrr~~ll~~~i   89 (491)
T PRK11010         13 NSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFF-SLVGQAYVFKFLWSPLMDRYTPPFLG-RRRGWLLATQL   89 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHH-HHHHHHHHHHHHHHHHHHcccccCCC-CchHHHHHHHH
Confidence            566788888888887 6777788999888 59999999986 66667777799999999996  4558 77778888888


Q ss_pred             HHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          211 LGALSWSLMATIV--ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       211 ~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      +.+++...+++..  .+.+.+.+.+++.+++.+...+...++..|++|+++|+++.++...++.   +|.++++.+++++
T Consensus        90 ~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~---lG~llg~~l~~~l  166 (491)
T PRK11010         90 LLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYR---LAMLVSGGLALWL  166 (491)
T ss_pred             HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            8877776666332  3566777888999999999999999999999999999999999988887   9999999999999


Q ss_pred             hh-ccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhh
Q 013568          289 VD-AYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQ  367 (440)
Q Consensus       289 ~~-~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~  367 (440)
                      .+ ..|||..|++.+++.++..+..+++||++...+. ++.          ..+...+.+++.++++..|...+..+++.
T Consensus       167 ~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~-~~~----------~~~~~~~~l~~~~~~~~~~~~ll~~~l~~  235 (491)
T PRK11010        167 ADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPV-PKT----------LEQAVVAPLRDFFGRNNAWLILLLIVLYK  235 (491)
T ss_pred             HhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-ccc----------hhhhHHHHHHHHHcCcCHHHHHHHHHHHH
Confidence            88 5799999999998877766655567775432111 000          00111234556667777666554444443


Q ss_pred             ccccc-cceeeeeeeccCCCChhhHHHHHH-HHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHH
Q 013568          368 ATPHS-DSAMFYFTTNELGFTPEFLGRVKF-VTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGT  430 (440)
Q Consensus       368 ~~~~~-~~~~~~~~~~~~g~s~~~~g~~~~-~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~  430 (440)
                      ..... ......++.+++|+++.+++.+.. ...++.++|.++++++.||+++|+.++.+.++.+
T Consensus       236 ~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~  300 (491)
T PRK11010        236 LGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQG  300 (491)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            32111 111223334568999999999874 5567999999999999999999887776554433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.92  E-value=1.4e-23  Score=207.15  Aligned_cols=276  Identities=18%  Similarity=0.217  Sum_probs=203.3

Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHHHhhhhhhcccc--CcCCCCcchhhhHHHHHHHH
Q 013568          138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSL--PLFGYRRRSYLVLSGLLGAL  214 (440)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~g~l~Dr~--~~~G~~rr~~l~~~~~~~~~  214 (440)
                      +...|+.+++. +.....+|.|++++ |+|.+++|++ .....++.++|++|+++||+  +.+| |||+++.++.++.++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~-~~~~~~~~~~~l~g~~~Dr~~~~~~g-~rr~~l~~~~~~~~l   80 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVE-GLDIQTIGFF-SLVGQAYIFKFLWAPLMDRYTPPLLG-RRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHH-HHHHHHHHHHHHHHHHHHcccccCCC-cchhHHHHHHHHHHH
Confidence            56778999997 78899999999995 9999999998 44445577799999999996  2237 777888888888877


Q ss_pred             HHHHHHhhh--chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc-
Q 013568          215 SWSLMATIV--ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA-  291 (440)
Q Consensus       215 ~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~-  291 (440)
                      +...++...  .+.+.+.+..++.+++.+...++.++++.|+.|+++|++++++...++.   +|.++++.+++++.+. 
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~---~g~i~g~~l~~~l~~~~  157 (402)
T PRK11902         81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYR---LAMLVSGGLALWLADRV  157 (402)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHH---HHHHHHhHHHHHHHhcc
Confidence            777666332  2355566666777888888999999999999999999999999988777   9999999999998885 


Q ss_pred             cchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccc
Q 013568          292 YGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH  371 (440)
Q Consensus       292 ~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~  371 (440)
                      +|||..|++.+++.++..+..+++||++..+++++           +..++..++.++++++|.++..++..+++.....
T Consensus       158 ~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~  226 (402)
T PRK11902        158 LGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPPR-----------SLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDA  226 (402)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc-----------hhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHH
Confidence            59999999988877666555556676543211110           0111233456677889988776665555443111


Q ss_pred             c-cceeeeeeeccCCCChhhHHHHHHHHH-HHHHHHHHHHHHhhccCCchhHHHHHHHHHH
Q 013568          372 S-DSAMFYFTTNELGFTPEFLGRVKFVTS-VASLLGVGLYNGFLKNVPLRKIFLANTIFGT  430 (440)
Q Consensus       372 ~-~~~~~~~~~~~~g~s~~~~g~~~~~~~-i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~  430 (440)
                      . .....++..+++|+++.++|++....+ ++.++|.++++++.||+++|+.+..+.++.+
T Consensus       227 ~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~  287 (402)
T PRK11902        227 FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQA  287 (402)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            1 111122334668999999999886654 4689999999999999999888766555443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.92  E-value=1.3e-23  Score=206.53  Aligned_cols=244  Identities=14%  Similarity=0.073  Sum_probs=187.2

Q ss_pred             HHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHH
Q 013568          154 AVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALS  232 (440)
Q Consensus       154 ~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (440)
                      .+|. +.+++|++..+.|++.+.+.+++.+ ++++|+++||   +|  ||+++..+.++..++.+.++ +.++++.++++
T Consensus        31 ~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr---~g--~r~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~  103 (390)
T PRK03545         31 LLSD-IAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN---VE--RRKLLIGLFVLFIASHVLSA-LAWNFTVLLIS  103 (390)
T ss_pred             chHH-HHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CC--hHHHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence            3454 5556999999999999999999887 7888999999   45  78888888888888877777 78899999999


Q ss_pred             HHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHh-
Q 013568          233 ILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGV-  311 (440)
Q Consensus       233 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~-  311 (440)
                      |++.|++.+...+...+++.|++|+++|+++.+++..+..   +|..+||.+++.+.+.+|||+.|++.+++.++..+. 
T Consensus       104 r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~---~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~  180 (390)
T PRK03545        104 RIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTA---LAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL  180 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHH---HHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888999999999999999999999888777   999999999999999999999999998877666553 


Q ss_pred             heeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccc-cccceeeeeeeccCCCChhh
Q 013568          312 AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP-HSDSAMFYFTTNELGFTPEF  390 (440)
Q Consensus       312 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~  390 (440)
                      ..++||+++++    +              ...++..+.+++|.++...+..++..... ........+..+..|+++.+
T Consensus       181 ~~~~~~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~  242 (390)
T PRK03545        181 IKLLPLLPSEH----S--------------GSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENF  242 (390)
T ss_pred             HHhCCCCCCCC----c--------------chHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccH
Confidence            33455532210    0              11234556788888765443333322111 01111222334567999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHH
Q 013568          391 LGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLAN  425 (440)
Q Consensus       391 ~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~  425 (440)
                      ++.+....+++.+++.++.+++.||+++|......
T Consensus       243 ~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~  277 (390)
T PRK03545        243 ATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAI  277 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            99999999999999999999999999987654443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=2.5e-23  Score=201.97  Aligned_cols=277  Identities=14%  Similarity=0.165  Sum_probs=201.9

Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHH
Q 013568          138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS  215 (440)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~  215 (440)
                      +....+...+. +.....+|.+..+ ++.+..+.+++.++..++..+ +|++|+++||   +|  ||+.++.+.++..++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr---~g--~r~~~~~~~~~~~~~   77 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADR---YD--RKKVMIGADLIRAVL   77 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh---hc--hhHHHHHHHHHHHHH
Confidence            34445555555 5666677777776 799999999999999999888 8999999999   45  777777777766666


Q ss_pred             HHHHHhhhc-----hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh
Q 013568          216 WSLMATIVE-----SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD  290 (440)
Q Consensus       216 ~~~~~~~~~-----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~  290 (440)
                      .+++. ...     +.+.+++.|++.|++.+...+...+++.|++|+++|++..++.+....   +|.++||.+++++.+
T Consensus        78 ~~~~~-~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~l~~~l~~  153 (365)
T TIGR00900        78 VAVLP-FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRS---LFYIVGPGIGGLMYA  153 (365)
T ss_pred             HHHHH-HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHH
Confidence            55555 344     788889999999999999999999999999999999999999988888   999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccc
Q 013568          291 AYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP  370 (440)
Q Consensus       291 ~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~  370 (440)
                      ..||++.|++.++..++..+..+++++++..++++++.   ++    +..++..+..+..+++|.++..++..+++....
T Consensus       154 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (365)
T TIGR00900       154 TLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQAL---SN----AVLRDTREGIKFVLKNPLLRTLLLLALLFNLVF  226 (365)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCcccccc---ch----hHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            99999999998876666555443333222111111100   00    111223334556678888777665555444322


Q ss_pred             c-cc-ceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          371 H-SD-SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       371 ~-~~-~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      . .. ....++..+.+|.++.+.+.+....+++.+++.++.+++.||+++|+.+..+.++.++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  289 (365)
T TIGR00900       227 APAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGL  289 (365)
T ss_pred             HHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence            1 11 2233444345899999999999999999999999999999999999888765544433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.92  E-value=3.2e-23  Score=203.01  Aligned_cols=270  Identities=15%  Similarity=0.122  Sum_probs=202.0

Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHH
Q 013568          138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS  215 (440)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~  215 (440)
                      +.+..+...+. ......+|.+. +++|.+..+.+++.+++.+++.+ ++++|+++||   +|  ||+++..+.++..++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~---~g--~r~~~~~~~~~~~~~   83 (385)
T TIGR00710        10 LGCLSILGPLGIDMYLPAFPEIA-ADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR---YG--RRPVLLLGLFIFALS   83 (385)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh---cC--ChHHHHHHHHHHHHH
Confidence            33344444454 45555555554 55899999999999999999888 8899999999   45  788888888888887


Q ss_pred             HHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchH
Q 013568          216 WSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVR  295 (440)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~  295 (440)
                      .+.+. ..++.+.+.+.|++.|++.+...+...+++.|++|+++|++..++.+....   +|..+++.+++++.+..|||
T Consensus        84 ~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~l~~~~~~~  159 (385)
T TIGR00710        84 SLGLA-LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLA---LAPAVAPLLGGYILVWLSWH  159 (385)
T ss_pred             HHHHH-HHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCHH
Confidence            77776 678888899999999999999999999999999999999999988887777   99999999999999989999


Q ss_pred             HHHHHHHHHHHHHHHh-heeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhc-ccccc
Q 013568          296 FVFGVTALLPLITSGV-AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQA-TPHSD  373 (440)
Q Consensus       296 ~~f~i~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~-~~~~~  373 (440)
                      +.|++.+++.++..+. .++.||++..+++             +..++..+..++.+++|+++...+...+... .....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (385)
T TIGR00710       160 AIFAFLSLAGILLSALIFFILPETLPYEAR-------------IQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFF  226 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCccc-------------CCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence            9999988777666553 4455665432111             0112334456677888887765543333221 11111


Q ss_pred             ceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHH
Q 013568          374 SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGT  430 (440)
Q Consensus       374 ~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~  430 (440)
                      ...++++.+.+|+++.+.+.+.....++.+++.++.+++.||+++|+.+..+.++..
T Consensus       227 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~  283 (385)
T TIGR00710       227 SGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFA  283 (385)
T ss_pred             HcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            222333445789999999999999999999999999999999999988776654443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.91  E-value=6.8e-23  Score=202.76  Aligned_cols=289  Identities=40%  Similarity=0.732  Sum_probs=231.4

Q ss_pred             hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHHHhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhc---hh
Q 013568          150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVE---SK  226 (440)
Q Consensus       150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~---~~  226 (440)
                      +......+++++++|+++++...+.++..+++.++|++|.++|.+|++|+|||++++++.++..++...++....   +.
T Consensus         7 l~~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~   86 (433)
T PF03092_consen    7 LSRLAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA   86 (433)
T ss_pred             hHHHHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence            566678889999999999999999999999999999999999999999999999999999888766666663433   45


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Q 013568          227 YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPL  306 (440)
Q Consensus       227 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~  306 (440)
                      ....++.++..+|.+..+.+..+++.|...++... +..+.+..+...++|.+++..++|.+.+..++++.|.+.+++..
T Consensus        87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~  165 (433)
T PF03092_consen   87 AIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPL  165 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHH
Confidence            56677788999999999999999999999887765 66777777777789999999999999999999999999988887


Q ss_pred             HHHHhheeeccccccCCCcCCC-CCCC-CCccchhhHHHHHHHHHHhcCcchhhhHH-HHHhhhccccccce-eeeeeec
Q 013568          307 ITSGVAVLVKEQQVLGPSRRQN-LPLG-DPSFFESSKQNMFQLWEAVKQPNVFLPTL-FVFLWQATPHSDSA-MFYFTTN  382 (440)
Q Consensus       307 ~~~~~~~~~~e~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~l-~~~~~~~~~~~~~~-~~~~~~~  382 (440)
                      +..+..+++.|++...+..+.. ...+ .+......++..++.++.+++|.+|...+ +.+++........+ .+|+.++
T Consensus       166 l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~  245 (433)
T PF03092_consen  166 LMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTD  245 (433)
T ss_pred             HHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEec
Confidence            7766555555542221111100 0000 01111225677888999999999999888 77777776655556 6777777


Q ss_pred             cCC---CChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhhhhhhc
Q 013568          383 ELG---FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVCI  439 (440)
Q Consensus       383 ~~g---~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~~~l~~  439 (440)
                      ..+   +++...|.+..+..++.++|..++.++..++..|+++.++.++.++..+..+++
T Consensus       246 ~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~l  305 (433)
T PF03092_consen  246 ALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLL  305 (433)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEE
Confidence            788   999999999999999999999999999999999999999998888877766543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.91  E-value=4.7e-23  Score=202.01  Aligned_cols=270  Identities=10%  Similarity=0.072  Sum_probs=201.7

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .++.+.+..+..+.. ......+|.+. +++|++.++.|++.+.+.+++.+ ++++|+++||   +|  ||+++..+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr---~g--~r~~~~~~~~~   77 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVLTELA-HDVGISIPAAGHMISYYALGVVVGAPIIALFSSR---YS--LKHILLFLVAL   77 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhChHHHH-HHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc---Cc--cHHHHHHHHHH
Confidence            456667777777776 45555666554 55899999999999999999988 8999999999   45  88888888888


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc
Q 013568          212 GALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA  291 (440)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~  291 (440)
                      ..++.++++ ++++++.+++.|++.|++.+...+....++.|+.++++|++..++...+..   +|..+++.+++++.+.
T Consensus        78 ~~~~~~l~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~l~~~l~~~  153 (382)
T PRK10091         78 CVIGNAMFT-LSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMT---VANLLGIPLGTYLSQE  153 (382)
T ss_pred             HHHHHHHHH-HhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHH---HHHHHhccHHHHHhhh
Confidence            888887777 788999999999999999998888888899999999999988888776666   9999999999999988


Q ss_pred             cchHHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhc-c
Q 013568          292 YGVRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQA-T  369 (440)
Q Consensus       292 ~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~-~  369 (440)
                      .|||+.|++.+++.++..+ ..+++||.++++   +.           ..+    +..+.++++..|......++... .
T Consensus       154 ~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~---~~-----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  215 (382)
T PRK10091        154 FSWRYTFLLIAVFNIAVLASIYFWVPDIRDEA---KG-----------GLR----EQFHFLRSPAPWLIFAATMFGNAGV  215 (382)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc-----------CHH----HHHHHhcChHHHHHHHHHHHHHHHH
Confidence            9999999998887666554 344566643210   00           111    12345677776655433332211 0


Q ss_pred             ccccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          370 PHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       370 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      .........++.+.+|+++.+.+++....+++.+++.++.+++.||+++|+.+..+..+.++
T Consensus       216 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i  277 (382)
T PRK10091        216 FAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVL  277 (382)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHH
Confidence            00011111223356899999999999999999999999999999999999888776655443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.91  E-value=6.4e-23  Score=202.91  Aligned_cols=277  Identities=11%  Similarity=0.058  Sum_probs=195.8

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG  212 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~  212 (440)
                      ++.+++.+++++++ .......+ .+++++|++..+.|++.+++.+++++ +++.|+++||   +|  ||+.+..+.++.
T Consensus        10 ~~~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr---~G--~r~~~~~~~~~~   83 (412)
T TIGR02332        10 IIFLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI---IG--ARRWIAGIMVLW   83 (412)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH---hC--hHHHHHHHHHHH
Confidence            44566677777776 44544444 67777999999999999999999988 8899999999   45  777888888888


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh--
Q 013568          213 ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD--  290 (440)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~--  290 (440)
                      .++.++.+ ++++.+.+++.|++.|++.+...+....++.|++|+++|+++.++++.+..   +|.++++.+++++.+  
T Consensus        84 ~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~---~g~~~~~~~~~~l~~~~  159 (412)
T TIGR02332        84 GIASTATM-FATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMP---VTMALGLILSGYILALD  159 (412)
T ss_pred             HHHHHHHH-HhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCC
Confidence            88887777 788899999999999999999888888999999999999999999988877   999999999998864  


Q ss_pred             ----ccchHHHHHHHHHHHHHHHH-hheeeccccccCC---CcCCC--------C--CCCC-CccchhhHHHHHHHHHHh
Q 013568          291 ----AYGVRFVFGVTALLPLITSG-VAVLVKEQQVLGP---SRRQN--------L--PLGD-PSFFESSKQNMFQLWEAV  351 (440)
Q Consensus       291 ----~~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~---~~~~~--------~--~~~~-~~~~~~~~~~~~~~~~~l  351 (440)
                          ..|||+.|++.++..++..+ .++++||++....   +++++        .  ..+. ++..+..+...++.++.+
T Consensus       160 ~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
T TIGR02332       160 GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREI  239 (412)
T ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHh
Confidence                36999999998887766544 5567788764311   00000        0  0000 000000000111222334


Q ss_pred             cCcchhhhHHHHHhhhccccc-cceeeeeeec-cCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhH
Q 013568          352 KQPNVFLPTLFVFLWQATPHS-DSAMFYFTTN-ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKI  421 (440)
Q Consensus       352 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~  421 (440)
                      ++|.+|...+..++....... ....+.++.+ ..|++..+.+.+.....++.++|.++.+++.||+++|+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~  311 (412)
T TIGR02332       240 FTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH  311 (412)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence            456666555433332221111 1112233323 347788888999999999999999999999999987764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.91  E-value=1.1e-22  Score=206.08  Aligned_cols=285  Identities=14%  Similarity=0.021  Sum_probs=206.8

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG  212 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~  212 (440)
                      +..+++.++...++ .+....+|.+.++ +|.+..+.+|+.+.+.+++.+ ++++|+++||   +|  ||+.++.+.++.
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~---~G--rk~~l~~~~~~~   81 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDR---IG--FKRLLMLGGTLF   81 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--cHHHHHHHHHHH
Confidence            44677777888887 6777788877665 899999999999999999887 8999999999   45  888888988888


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhh-cccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc
Q 013568          213 ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERA-RGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA  291 (440)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~  291 (440)
                      .++.+.++ .+++.+.++++|+++|++.+...+.....+.+.+ |+++|+++.+++.....   +|..+||.++|++.++
T Consensus        82 ~~~~~~~~-~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~---~g~~~gp~lgg~l~~~  157 (495)
T PRK14995         82 GLASLAAA-FSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGS---GGAAFGPLVGGILLEH  157 (495)
T ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcc
Confidence            88888877 7899999999999999999998887777777765 67889999999888877   9999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCC------------------CCccchhhH-----------
Q 013568          292 YGVRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLG------------------DPSFFESSK-----------  341 (440)
Q Consensus       292 ~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~------------------~~~~~~~~~-----------  341 (440)
                      .||||.|++...+.++.++ ..+++|+++.+++++  .+...                  .+.......           
T Consensus       158 ~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~--~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (495)
T PRK14995        158 FYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQP--LNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALL  235 (495)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC--CChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence            9999999998877666555 444566654321111  00000                  000000000           


Q ss_pred             ---HHHHH--------HHHHhcCcchhhhHHHHHhhhcccc-ccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHH
Q 013568          342 ---QNMFQ--------LWEAVKQPNVFLPTLFVFLWQATPH-SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLY  409 (440)
Q Consensus       342 ---~~~~~--------~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~  409 (440)
                         ....+        ..+++|+|.++...+..++...... .......++.+.+|+++.++|+...+..++..++..+.
T Consensus       236 l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~  315 (495)
T PRK14995        236 LGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIA  315 (495)
T ss_pred             HHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence               00001        1256677776555444443322110 11111223335689999999999999999999999999


Q ss_pred             HHhhccCCchhHHHHHHHHHHH
Q 013568          410 NGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       410 ~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      |++.||+|+|+.+..+.++.++
T Consensus       316 g~l~~r~g~~~~~~~g~~~~~~  337 (495)
T PRK14995        316 GILVSRLGLRLVATGGMALSAL  337 (495)
T ss_pred             HHHHHHcCchHHHHHHHHHHHH
Confidence            9999999998887766655443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.91  E-value=9.8e-23  Score=200.84  Aligned_cols=285  Identities=12%  Similarity=0.137  Sum_probs=196.0

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG  212 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~  212 (440)
                      +..+++.++..++. .......+. +++++|++..+.+++.+++.+++.+ +++.|+++||   +|  ||+.++.+.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr---~g--~r~~~~~~~~~~   87 (405)
T TIGR00891        14 FSAAWLGWLLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR---YG--RRLPMVTSIVLF   87 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH---hc--cHHHHHHHHHHH
Confidence            44566777777776 445544554 5566899999999999999999888 8999999999   45  777777887777


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhcc
Q 013568          213 ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY  292 (440)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~  292 (440)
                      +++.+++. +.++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..   +|.++++.+++.+.+..
T Consensus        88 ~~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~l~~~l~~~~  163 (405)
T TIGR00891        88 SAGTLACG-FAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYA---VGAVVAAQVYSLVVPVW  163 (405)
T ss_pred             HHHHHHHH-HhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence            77777776 678889999999999999999999999999999999999999999988877   99999999999988776


Q ss_pred             c--hHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCC--Ccc---chhhHHHHH----HHHHHhcC-cc-hhhh
Q 013568          293 G--VRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGD--PSF---FESSKQNMF----QLWEAVKQ-PN-VFLP  359 (440)
Q Consensus       293 g--w~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~----~~~~~l~~-~~-~~~~  359 (440)
                      +  ||+.|++.++..++..+....+||++..++.+++++...+  +..   .+..+...+    ..++..+. +. +...
T Consensus       164 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (405)
T TIGR00891       164 GDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYL  243 (405)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHH
Confidence            6  9999998776665555555567776532211111000000  000   000000001    11111111 11 1111


Q ss_pred             HHHHHhhhccc-cccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHH
Q 013568          360 TLFVFLWQATP-HSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFG  429 (440)
Q Consensus       360 ~l~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~  429 (440)
                      .+...+..... .....++.+..+++|+++.+.+.+....+++.+++.++.+++.||+++|+.+..+.++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~  314 (405)
T TIGR00891       244 VVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAG  314 (405)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHH
Confidence            11111111111 11122233344578999999999999999999999999999999999999887766544

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.91  E-value=8.2e-23  Score=199.83  Aligned_cols=260  Identities=16%  Similarity=0.131  Sum_probs=198.1

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY  227 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~  227 (440)
                      +...+.+|.+.++ +|++..+.+++.+++.++..+ ++++|+++||   +|  ||+++..+.++..++...+. ..++.+
T Consensus         8 ~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~g--~~~~~~~~~~~~~i~~~~~~-~~~~~~   80 (377)
T PRK11102          8 DMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADS---FG--RKPVILGGTLVFALAAVACA-LAQTID   80 (377)
T ss_pred             HHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh---cC--ChHHHHHHHHHHHHHHHHHH-HHccHH
Confidence            3445567777766 899999999999999999888 7899999999   44  78888888888888877776 678888


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      .+++.+++.|++.+...+...+++.|++++++|++..++......   +|..++|.+++.+.+.+||++.|++.+++.++
T Consensus        81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  157 (377)
T PRK11102         81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMT---IAPLLAPIIGGWLLVWFSWHAIFWVLALAAIL  157 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999988887777   99999999999999989999999998877766


Q ss_pred             HHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcc-ccccceeeeeeeccCC
Q 013568          308 TSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQAT-PHSDSAMFYFTTNELG  385 (440)
Q Consensus       308 ~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~g  385 (440)
                      ..+ ..+++||+++.+++++           ...++..++.++.+++|.++..++..++.... ........+++.+.+|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  226 (377)
T PRK11102        158 AAALVFFFIPETLPKERRQP-----------FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNG  226 (377)
T ss_pred             HHHHHHHhCCccCcccccCC-----------CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhC
Confidence            655 4456666543211110           01122334556678888776655433332211 1111111223335689


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHH
Q 013568          386 FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFG  429 (440)
Q Consensus       386 ~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~  429 (440)
                      +++.+.|.+.....++.+++.++.+++.||+|+|+.+..+..+.
T Consensus       227 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~  270 (377)
T PRK11102        227 VSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQ  270 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887766543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.91  E-value=8.9e-23  Score=198.85  Aligned_cols=259  Identities=17%  Similarity=0.185  Sum_probs=188.3

Q ss_pred             HHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHH
Q 013568          154 AVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALS  232 (440)
Q Consensus       154 ~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (440)
                      .+.+++++++|++..+.|++.+++.+++.+ +|++|+++||   +|  ||+.+..+.++..++.+.++ ++++.+.++++
T Consensus        24 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~---~G--~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   97 (377)
T TIGR00890        24 LLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK---FG--PRAVAMLGGILYGLGFTFYA-IADSLAALYLT   97 (377)
T ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH---cC--ccchhHHhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            445556667999999999999999999988 8999999999   46  77777788888888877777 77889999999


Q ss_pred             HHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHh-
Q 013568          233 ILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGV-  311 (440)
Q Consensus       233 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~-  311 (440)
                      |++.|++.+...+.....+.++++ ++|+++.++...+..   +|.++++.+.+.+.+..|||+.|++.+++.++..+. 
T Consensus        98 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  173 (377)
T TIGR00890        98 YGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYG---LGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLG  173 (377)
T ss_pred             HHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcc---hhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            999999999877777778888886 568888888887777   888877777777777889999999998887776654 


Q ss_pred             heeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccccccceeeeeeeccCCCChhhH
Q 013568          312 AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFL  391 (440)
Q Consensus       312 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~  391 (440)
                      .++++++++++..++.+           .++..++.++.+++|.++...+..++..........+...+.+++|.++.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (377)
T TIGR00890       174 AFLIGYPPGQLIKTNIE-----------VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFL  242 (377)
T ss_pred             HHheecCchhccccCcc-----------cchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            44555544321111100           0111123456778888776654444433211111111111225678888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013568          392 GRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALG  433 (440)
Q Consensus       392 g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~  433 (440)
                      +.+.....++.+++.++.+++.||+++|+.+..+.++.++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~  284 (377)
T TIGR00890       243 VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGM  284 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence            999999999999999999999999999998877665554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.91  E-value=1.1e-22  Score=202.78  Aligned_cols=270  Identities=11%  Similarity=0.090  Sum_probs=193.1

Q ss_pred             HHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHH
Q 013568          137 AVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGAL  214 (440)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~  214 (440)
                      ..++.+++..+. ......+|.+.++ +|++..+.|++.+.+.+++.+ +++.|+++||   +|  ||+++.++.++..+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr---~g--~r~~~~~~~~~~~~  100 (434)
T PRK11663         27 TMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDR---SN--ARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh---cC--CchhHHHHHHHHHH
Confidence            445555555554 4556666766665 899999999999999999988 8899999999   45  77788888888888


Q ss_pred             HHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccch
Q 013568          215 SWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGV  294 (440)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw  294 (440)
                      +.++++ ..++++.+++.|++.|++.+...+...+++.|++++++|++++++++.+..   +|.++++.+++++.+.+||
T Consensus       101 ~~~~~~-~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~---~g~~~~~~~~~~l~~~~gw  176 (434)
T PRK11663        101 INILFG-FSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHN---VGGALIPLVVGAIALHYGW  176 (434)
T ss_pred             HHHHHH-HHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcccH
Confidence            877776 678888888999999999998888899999999999999999999888777   9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCC----CCCccchhhHHHHHHHH--HHhcCcchhhhHHHHHhhh
Q 013568          295 RFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPL----GDPSFFESSKQNMFQLW--EAVKQPNVFLPTLFVFLWQ  367 (440)
Q Consensus       295 ~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~l~~~~~~  367 (440)
                      |+.|++.+++.++..+ ..++++|++.........++.    +.....+..+...++..  ..+++|.+|.+.+..++..
T Consensus       177 ~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (434)
T PRK11663        177 RYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVY  256 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            9999998877665443 445667665321100000000    00000000001112221  2567888777655444332


Q ss_pred             ccccccc-eeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 013568          368 ATPHSDS-AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNV  416 (440)
Q Consensus       368 ~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~  416 (440)
                      ....... ..+.+..+++|++..+.+.......++.++|.++.+++.||+
T Consensus       257 ~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~  306 (434)
T PRK11663        257 VVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL  306 (434)
T ss_pred             HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            2111111 123334467899999999999999999999999999999998

>TIGR00901 2A0125 AmpG-related permease

Probab=99.91  E-value=1.3e-22  Score=196.96  Aligned_cols=266  Identities=20%  Similarity=0.244  Sum_probs=186.2

Q ss_pred             hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHHHhhhhhhcccc--CcCCCCcchhhhHHHHHHHHHHHHHHhhh--ch
Q 013568          150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSL--PLFGYRRRSYLVLSGLLGALSWSLMATIV--ES  225 (440)
Q Consensus       150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~g~l~Dr~--~~~G~~rr~~l~~~~~~~~~~~~~~~~~~--~~  225 (440)
                      .....+|.+++| +|+|.+++|++... .+++.+++++|+++||+  +++| |||++++.+.++.+++..++++..  .+
T Consensus         6 ~~~~~~~~~~~~-~g~s~~~~g~~~~~-~~~~~~~~~~g~~~Dr~~~~~~G-rr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         6 LVGNTLPYWLRS-KNVSLKTIGFFSLV-GLPYSLKFLWSPLVDTVYLPFFG-RRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hHHhHHHHHHHH-cCCCHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCCCC-ccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            344566777776 79999999998544 67776799999999997  3468 777777777777777766665232  23


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccc--------hHHH
Q 013568          226 KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG--------VRFV  297 (440)
Q Consensus       226 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~g--------w~~~  297 (440)
                      .+.+....++.+++.+...++..+++.|++|+++|+++.++...+..   +|.++++.+++.+.+..|        ||..
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~---~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~  159 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYR---AGMLLSGSLALVLASPEFANTGLITLWGYI  159 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHH---HHHHHHHHHHHHHhhhcccccccccccHHH
Confidence            44456666778888888999999999999999999999999888877   999999999999988888        9999


Q ss_pred             HHHHHHHHHHHHHhhe-eeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcc---hhhhHHHHHhhhccccc-
Q 013568          298 FGVTALLPLITSGVAV-LVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPN---VFLPTLFVFLWQATPHS-  372 (440)
Q Consensus       298 f~i~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~l~~~~~~~~~~~-  372 (440)
                      |++.+++.++..+..+ ..||++..++. ++          +..++.....++++++|.   ++...+..+++...... 
T Consensus       160 f~i~ai~~l~~~~~~~~~~~e~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (356)
T TIGR00901       160 FFWTALLILPGLLVTLFLAKEPQEDASV-PK----------PLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAA  228 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCccccc-ch----------hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence            9999887776655444 34554321110 00          011122233445566664   55544444444332211 


Q ss_pred             cceeeeeeeccCCCChhhHHHHHHHHH-HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013568          373 DSAMFYFTTNELGFTPEFLGRVKFVTS-VASLLGVGLYNGFLKNVPLRKIFLANTIFGTALG  433 (440)
Q Consensus       373 ~~~~~~~~~~~~g~s~~~~g~~~~~~~-i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~  433 (440)
                      .....++.. ++|+++.+++.+....+ ++.++|.++++++.||+|+|+.++.+.++.++..
T Consensus       229 ~~~~~~~l~-~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~  289 (356)
T TIGR00901       229 TVLTTLFLL-DMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTN  289 (356)
T ss_pred             HHHHHHHHH-HcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            222233333 48999999998887665 5788999999999999999888877766655443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.91  E-value=1.1e-22  Score=202.42  Aligned_cols=285  Identities=16%  Similarity=0.208  Sum_probs=197.1

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHH
Q 013568          135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA  213 (440)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~  213 (440)
                      +..+.+.++..++.........+.+++++|++..+.+++.+++.+++.+ ++++|+++||   +|  ||+.++.+.++..
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr---~g--~r~~l~~~~~~~~   94 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK---FG--RKPLMMWSIVAYS   94 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--ChHHHHHHHHHHH
Confidence            4455566666666633334444556666999999999999999999988 8899999999   45  8888888888888


Q ss_pred             HHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccc
Q 013568          214 LSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG  293 (440)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~g  293 (440)
                      ++.++.+ +.++.+.++++|++.|++.+...+....++.|++|+++|+++.++...+..   +|.++++.+.+.+.+.+|
T Consensus        95 ~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---lg~~~~~~l~~~l~~~~~  170 (426)
T PRK12307         95 VGTGLSG-LASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFG---IGNIIAAYFMPSFAEAYG  170 (426)
T ss_pred             HHHHHHH-HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHh---HHHHHHHHHHHHHcccCC
Confidence            8877777 678889999999999999999999999999999999999999999888777   999999999999988899


Q ss_pred             hHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHh-hhc--cc
Q 013568          294 VRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFL-WQA--TP  370 (440)
Q Consensus       294 w~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~-~~~--~~  370 (440)
                      ||+.|++..+..++........||++...+.+.+......+   ...+......++.+++|.++...+.... +..  ..
T Consensus       171 w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (426)
T PRK12307        171 WRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQ---SAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGAN  247 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhccccccc---cchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence            99999886544333222222334433211110000000000   0001111234566777766543321111 111  00


Q ss_pred             c-ccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 013568          371 H-SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTAL  432 (440)
Q Consensus       371 ~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~  432 (440)
                      . .......+. ++.|+++...+.......++.+++.++.+++.||+++|+.+..+.++.++.
T Consensus       248 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~  309 (426)
T PRK12307        248 WPIFGLLPTYL-AGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLF  309 (426)
T ss_pred             HHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            0 011112222 356899989999888899999999999999999999999887776554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.90  E-value=1.6e-22  Score=196.92  Aligned_cols=283  Identities=15%  Similarity=0.100  Sum_probs=193.2

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .++..++.++..... ......+|.++++++|+|..+.+++.++..+++.+ ++++|+++||   +|  ||+.++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr---~g--~r~~~~~~~~~   76 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK---FG--PRYTTTLSLLL   76 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH---hC--chHHHHHHHHH
Confidence            345566666666555 45566666668888999999999999999999988 8899999999   45  77778888888


Q ss_pred             HHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh
Q 013568          212 GALSWSLMATIVE-SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD  290 (440)
Q Consensus       212 ~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~  290 (440)
                      ..++.++++ +.+ +++.+++.|++.|++.+.. .....++.|++|+++|+++.++......   +|..+++.+++.+..
T Consensus        77 ~~i~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~g~~~~~~i~~~l~~  151 (366)
T TIGR00886        77 LAIPCLWAG-LAVQSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGN---MGGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHHHHHHH-HHhhhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhH---HHHHHHHHHHHHHHH
Confidence            888877777 566 8888899999999986654 5678899999999999999888875555   777777776666554


Q ss_pred             ----------ccchHHHHH-HHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhh
Q 013568          291 ----------AYGVRFVFG-VTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFL  358 (440)
Q Consensus       291 ----------~~gw~~~f~-i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  358 (440)
                                +.+||+.|+ ..+++..+..+ ...+.+|++..++++++.......  .+..++..++.++.+++|+++.
T Consensus       152 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  229 (366)
T TIGR00886       152 SLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGAR--WSVGTGALGDQLKVFRDRHTWI  229 (366)
T ss_pred             HHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhccccccc--ccccchhHHHHHHHHhccchhh
Confidence                      348999994 43444443333 344555544322111111000000  0011122234566788888776


Q ss_pred             hHHHHHhhhccc-cccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHH
Q 013568          359 PTLFVFLWQATP-HSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIF  428 (440)
Q Consensus       359 ~~l~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~  428 (440)
                      ..+..+++.... ........+..+.+|+++.+.+.+.....++.+++.++.+++.||+|+|+.+..+...
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~  300 (366)
T TIGR00886       230 LALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLG  300 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHH
Confidence            655444432211 1122223344467899999999888888999999999999999999998766655433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.90  E-value=3.3e-23  Score=200.19  Aligned_cols=280  Identities=19%  Similarity=0.299  Sum_probs=197.6

Q ss_pred             HHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHH
Q 013568          139 AMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSW  216 (440)
Q Consensus       139 ~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~  216 (440)
                      ++.++...+. +.....++.++.+++|.+..+++++.+++.++..+ ++++|+++||   +|  ||+.+..+.++.+++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr---~g--~r~~l~~~~~~~~~~~   76 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR---FG--RRRVLIIGLLLFALGS   76 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH---S---HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--CeeeEeehhhhhhhHH
Confidence            3445555555 45566666577777999999999999999998887 8999999999   45  6668888888888884


Q ss_pred             HHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHH
Q 013568          217 SLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRF  296 (440)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~  296 (440)
                      .+.. ++++.+.++++|++.|++.+...+...+++.|++|+++|+++.++......   +|.+++|.+++++.+.+|||+
T Consensus        77 ~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~l~~~l~~~~~~~~  152 (352)
T PF07690_consen   77 LLLA-FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFS---LGSILGPLLGGFLISYFGWRW  152 (352)
T ss_dssp             HHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHH---HHHHHHHHHHHHCCCHCHHCC
T ss_pred             HHhh-hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhh---hhhhcccchhhhhhhcccccc
Confidence            4444 446667899999999999999999999999999999999999999988887   999999999999998899999


Q ss_pred             HHHHHHHHHHHHHHh-heeeccccccCCCcCCCCCCCCCccchhhHHHHHH-HHHHhcCcchhhhHHHHHhhhccc-ccc
Q 013568          297 VFGVTALLPLITSGV-AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ-LWEAVKQPNVFLPTLFVFLWQATP-HSD  373 (440)
Q Consensus       297 ~f~i~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~l~~~~~~~~~-~~~  373 (440)
                      .|++.+++.++..++ .+++++++..++.+++.+..      +..+..+++ .+...++|.+|...+..++..... ...
T Consensus       153 ~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (352)
T PF07690_consen  153 AFLISAILSLIAAILFILFLPEPPPPRERESPKESE------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFS  226 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhhhHhhhhhhcccccccccccccc------cccccccccccccccccchhhhhhhhhhHHHHHHHHhh
Confidence            999999988887663 34555544433222221100      001111122 334455665652222222222111 112


Q ss_pred             ceeeeeeeccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013568          374 SAMFYFTTNELGFT-PEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALG  433 (440)
Q Consensus       374 ~~~~~~~~~~~g~s-~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~  433 (440)
                      ...+.+..+.+|++ ..+.+.+....+++.+++.++.+++.||+++++..........+..
T Consensus       227 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  287 (352)
T PF07690_consen  227 FFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGA  287 (352)
T ss_dssp             HHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            22233345678888 7888999999999999999999999999998777666555554444

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.90  E-value=2.7e-22  Score=197.27  Aligned_cols=241  Identities=14%  Similarity=0.060  Sum_probs=181.6

Q ss_pred             HHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHH
Q 013568          152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAA  230 (440)
Q Consensus       152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  230 (440)
                      ...+|++. +++|+++++.++..+...++..+ +|++|+++||   +|  ||+.+..+.++..++.++.. ..++++.++
T Consensus        40 ~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr---~g--rr~~~~~~~~~~~~~~~~~~-~~~~~~~l~  112 (394)
T PRK10213         40 VSLLTPMA-QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA---TD--RRYVVILFAVLLTLSCLLVS-FANSFSLLL  112 (394)
T ss_pred             HhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cC--cHHHHHHHHHHHHHHHHHHH-HHChHHHHH
Confidence            33455554 45899999999999999988887 8899999999   45  78888888888888877777 678899999


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 013568          231 LSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSG  310 (440)
Q Consensus       231 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~  310 (440)
                      ++|++.|++.+...+...+++.|++|+++|+++.++......   +|.++||.+++++.+.+|||+.|++.+++.++..+
T Consensus       113 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~---~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        113 IGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVS---IALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888887777   99999999999999999999999998876665544


Q ss_pred             hh-eeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccccc-cceeeeeeeccCCCCh
Q 013568          311 VA-VLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHS-DSAMFYFTTNELGFTP  388 (440)
Q Consensus       311 ~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~g~s~  388 (440)
                      .. ...||++.++  ++            . .   +..++.+++|.++...+..++....... ......++.+++|+++
T Consensus       190 ~~~~~~p~~~~~~--~~------------~-~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~  251 (394)
T PRK10213        190 WIIKSLPSLPGEP--SH------------Q-K---QNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGV  251 (394)
T ss_pred             HHHHHCCCCCccc--cc------------c-h---hHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            32 2355543110  00            0 1   1234567888877655443332221101 1111122235679999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCchh
Q 013568          389 EFLGRVKFVTSVASLLGVGLYNGFLKNVPLRK  420 (440)
Q Consensus       389 ~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~  420 (440)
                      ...+......+++.+++.++.+++.||.+++.
T Consensus       252 ~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~  283 (394)
T PRK10213        252 DGLTLVLLSFGIASFVGTSLSSFILKRSVKLA  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence            99999999999999999999999999965443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.90  E-value=3.4e-22  Score=196.61  Aligned_cols=259  Identities=12%  Similarity=0.025  Sum_probs=192.5

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY  227 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~  227 (440)
                      ......+|.+.++ +|.+..+.++..+++.+++.+ +|+.|+++||   +|  ||++++.+.++..++...+. ..++.+
T Consensus        20 ~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr---~g--~r~~l~~~~~~~~i~~~~~~-~~~~~~   92 (392)
T PRK10473         20 DMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADR---SG--RKPVAIPGAALFIIASLLCS-LAETSS   92 (392)
T ss_pred             HHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH---hC--ChHHHHHHHHHHHHHHHHHH-HhCcHH
Confidence            4555566666555 899999999999999999888 8899999999   45  77888888888777777766 667888


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      .+++.|++.|++.+...+...+++.|.+++++|++..++.+....   +|.+++|.+++.+.+..||++.|++.+++.++
T Consensus        93 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~---i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i  169 (392)
T PRK10473         93 LFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITC---IIPVLAPVLGHLIMLKFPWQSLFYTMAAMGIL  169 (392)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCcChHHHHHHHHHHHHH
Confidence            888999999999999888999999999999999998888876666   89999999999988889999999998877766


Q ss_pred             HHHh-heeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHh-hhccccccceeeeeeeccCC
Q 013568          308 TSGV-AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFL-WQATPHSDSAMFYFTTNELG  385 (440)
Q Consensus       308 ~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~g  385 (440)
                      ..+. .+++||++..+++++              ....++.++.++++.++...+...+ +...........++..+++|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (392)
T PRK10473        170 VLLLSLFILKETRPARAPAA--------------SSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMG  235 (392)
T ss_pred             HHHHHHHHcCCCCCcccCCc--------------cchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcC
Confidence            6553 445666543211100              0112334456777775554332222 11110011112233335789


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          386 FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       386 ~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      +++.+.+.+....+++.+++.++.+++.||+|+|+.+..+.++..+
T Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~  281 (392)
T PRK10473        236 FSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLA  281 (392)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988776655443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.90  E-value=7.5e-23  Score=205.88  Aligned_cols=280  Identities=15%  Similarity=0.082  Sum_probs=193.5

Q ss_pred             HHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHH
Q 013568          137 AVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGAL  214 (440)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~  214 (440)
                      .+++.|+...+. ......+|.+. +++|++..+.|++.+.+.+++.+ +++.|+++||   +|  ||+++..+.++..+
T Consensus        33 ~~~~~~~~~y~~r~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr---~g--~r~~l~~~~~~~~~  106 (467)
T PRK09556         33 VVFIGYLTMYLIRKNFKAAQNDMI-STYGLSTTELGMIGLGFSITYGVGKTLVGYYADG---KN--TKQFLPFLLILSAI  106 (467)
T ss_pred             HHHHHHHHHHHHhcChhhhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc---cC--ccchHHHHHHHHHH
Confidence            444555555555 45555666554 55999999999999999999988 8999999999   45  77777666666555


Q ss_pred             HHHHHHh----hhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh
Q 013568          215 SWSLMAT----IVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD  290 (440)
Q Consensus       215 ~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~  290 (440)
                      ..+.++.    .+++.+.++++|++.|++.+...+....++.|++|+++|+++++++..+..   +|.++++.+..++..
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~---lG~~l~~~i~~~~~~  183 (467)
T PRK09556        107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHN---LGGAGAGGVALWGAN  183 (467)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccc---hhhhHHHHHHHHHHH
Confidence            5444442    257888999999999999999888999999999999999999999987777   999999988877766


Q ss_pred             cc---chHHHHHHHHHHHHHHHHh-heeeccccccCCCcCCCCCCC-----CCccchhhHHHHHH-H-HHHhcCcchhhh
Q 013568          291 AY---GVRFVFGVTALLPLITSGV-AVLVKEQQVLGPSRRQNLPLG-----DPSFFESSKQNMFQ-L-WEAVKQPNVFLP  359 (440)
Q Consensus       291 ~~---gw~~~f~i~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~-~~~l~~~~~~~~  359 (440)
                      .+   +|+..|.+.+++.++..++ +++.++++.+....+.++..+     .+...+..+....+ . ...+++|.+|..
T Consensus       184 ~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  263 (467)
T PRK09556        184 YFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLL  263 (467)
T ss_pred             hhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHH
Confidence            43   6999998888777665553 334455433211000000000     00000000001111 1 236789998887


Q ss_pred             HHHHHhhhccccccce-eeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHH
Q 013568          360 TLFVFLWQATPHSDSA-MFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLAN  425 (440)
Q Consensus       360 ~l~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~  425 (440)
                      .+..++.......... .+.|..+.+|++..+.++......++.++|.+++|++.||+++|+.+...
T Consensus       264 ~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~  330 (467)
T PRK09556        264 CFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVAC  330 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            7665554332211222 23344567899999999999889999999999999999999988776554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.90  E-value=5.8e-22  Score=196.08  Aligned_cols=251  Identities=14%  Similarity=0.075  Sum_probs=189.8

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY  227 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~  227 (440)
                      ......+|.. .+++|.+..+.++..+++.+++.+ ++++|+++||   +|  ||++++.+.++..++.+++. .+++.+
T Consensus        33 ~~~~p~l~~i-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr---~G--rr~~l~~~~~~~~~~~~~~~-~a~~~~  105 (413)
T PRK15403         33 DLIQPGIINV-VRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR---IG--RRPVLITGALIFTLACAATL-FTTSMT  105 (413)
T ss_pred             HhhccCHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH---cC--chHHHHHHHHHHHHHHHHHH-HcCCHH
Confidence            4666666664 455899999999999999999988 8899999999   45  77788888888888877777 778999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      .++++|+++|++.+...+...+++.|.+++++++++.++......   +|..+||.+++.+.++.|||+.|++.+++.++
T Consensus       106 ~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i  182 (413)
T PRK15403        106 QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVL---VAPIIGPLSGAALMHFVHWKVLFAIIAVMGLI  182 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            999999999999987777778889999999999988888887777   99999999999999888999999999888777


Q ss_pred             HHHh-heeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccc-cccceeeeeeeccCC
Q 013568          308 TSGV-AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP-HSDSAMFYFTTNELG  385 (440)
Q Consensus       308 ~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~g  385 (440)
                      ..+. .+++||++..++.  +          ...+...++.+++++||.+|...+..++..... ......+++..+.+|
T Consensus       183 ~~~~~~~~lp~~~~~~~~--~----------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g  250 (413)
T PRK15403        183 AFVGLLLAMPETVKRGAV--P----------FSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGG  250 (413)
T ss_pred             HHHHHHHhCCCCccccCC--C----------CChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcC
Confidence            6653 4457776432111  0          012234556778889999887665444433211 111222344446679


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhH
Q 013568          386 FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKI  421 (440)
Q Consensus       386 ~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~  421 (440)
                      +++.+.++......++.+++..+.+++.++..+++.
T Consensus       251 ~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~  286 (413)
T PRK15403        251 MTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF  286 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence            999999999888888888888888887755444443

>PRK10133 L-fucose transporter; Provisional

Probab=99.90  E-value=5.5e-22  Score=197.47  Aligned_cols=279  Identities=13%  Similarity=0.096  Sum_probs=193.9

Q ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568          134 DNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG  212 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~  212 (440)
                      .++.+.+.++..++.......+.+.+++++|++..+.|++.+.+.+++.+ +++.|+++||   +|  ||+.+..+.++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr---~G--~r~~l~~g~~~~  101 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK---LS--YKAGIITGLFLY  101 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--cHHHHHHHHHHH
Confidence            34556667777777644444444456778999999999999999999998 8899999999   45  888888888888


Q ss_pred             HHHHHHHH--hhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh
Q 013568          213 ALSWSLMA--TIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD  290 (440)
Q Consensus       213 ~~~~~~~~--~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~  290 (440)
                      +++.+++.  ..++++..++++|++.|++.+...+..+.++.|+.+++++...+++.+..+.   +|..+|+.+++.+..
T Consensus       102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~---~G~~~g~~~g~~l~~  178 (438)
T PRK10133        102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS---FGAIIAVVFGQSLIL  178 (438)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence            88876542  2567889999999999999999999999999998777776666777777777   899999988876430


Q ss_pred             -c-------------------------cchHHHHHHHHHHHH-HHHHh-heeeccccccCCCcCCCCCCCCCccchhhHH
Q 013568          291 -A-------------------------YGVRFVFGVTALLPL-ITSGV-AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQ  342 (440)
Q Consensus       291 -~-------------------------~gw~~~f~i~~~~~~-~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  342 (440)
                       .                         .+||++|+....+.. +..+. ....||.+.+++.  ++          ....
T Consensus       179 ~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~--~~----------~~~~  246 (438)
T PRK10133        179 SNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS--DA----------KQGS  246 (438)
T ss_pred             cCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc--cc----------cccc
Confidence             0                         256667764443332 22222 2234442211110  00          0011


Q ss_pred             HHHHHHHHhcCcchhhhHHHHHhhhcccccccee-e-eeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchh
Q 013568          343 NMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAM-F-YFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRK  420 (440)
Q Consensus       343 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~  420 (440)
                      ..++.++++++|.++...+..+++.........+ . |...+.+|+++.++++......++.++|.++++++.||+++|+
T Consensus       247 ~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~  326 (438)
T PRK10133        247 FSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK  326 (438)
T ss_pred             hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            2233456778888766555444444322111111 1 2223568999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 013568          421 IFLANTIFGTAL  432 (440)
Q Consensus       421 ~l~~~~~~~~~~  432 (440)
                      .+..+.++.++.
T Consensus       327 ~l~~~~~~~~~~  338 (438)
T PRK10133        327 VLAAYALIAMAL  338 (438)
T ss_pred             HHHHHHHHHHHH
Confidence            887776555433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.90  E-value=5.1e-22  Score=196.30  Aligned_cols=259  Identities=12%  Similarity=-0.007  Sum_probs=192.7

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY  227 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~  227 (440)
                      +.+...++.+.+ ++|++..+.++..+.+.+++.+ +++.|+++||   +|  ||+++..+.++..++.+.+. ..++.+
T Consensus        30 ~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr---~g--~r~~l~~~~~~~~~~~~~~~-~~~~~~  102 (406)
T PRK15402         30 DMIQPGMLAVVE-DFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR---IG--RRPVMLAGVAFFILTCLAIL-LAQSIE  102 (406)
T ss_pred             hhHhcchHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--ChHHHHHHHHHHHHHHHHHH-HHccHH
Confidence            455666666555 4899999999999999999888 7899999999   45  77788888777777777766 677888


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      .+++.|++.|++.+...+...+.+.|.+++++|.+..++......   +|..+||.+++++.+..+||+.|++.+++.++
T Consensus       103 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~  179 (406)
T PRK15402        103 QFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVAL---LAPLLGPLVGAALIHVLPWRGMFVLFAALAAL  179 (406)
T ss_pred             HHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccCccHHHHHHHHHHHH
Confidence            899999999999998888889999999999988877776665555   88999999999999889999999998887776


Q ss_pred             HHHh-heeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccc-ccceeeeeeeccCC
Q 013568          308 TSGV-AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH-SDSAMFYFTTNELG  385 (440)
Q Consensus       308 ~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~g  385 (440)
                      ..+. .++.||++...+++            ...++..++.+..+++|.++...+..++...... .....++++.+.+|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g  247 (406)
T PRK15402        180 SFFGLWRAMPETAGRVGEK------------LSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQ  247 (406)
T ss_pred             HHHHHHHhCCCCCcccccc------------ccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Confidence            6553 34566654321110            0112233455677889987776554443322111 11112333345689


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHH
Q 013568          386 FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFG  429 (440)
Q Consensus       386 ~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~  429 (440)
                      +++.+.+.......++.++|.++.+++.||+++|+.+..+.++.
T Consensus       248 ~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~  291 (406)
T PRK15402        248 LSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPM  291 (406)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999998888888889999999999999999998877765433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.90  E-value=1.2e-22  Score=205.56  Aligned_cols=289  Identities=13%  Similarity=0.112  Sum_probs=208.3

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG  212 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~  212 (440)
                      +..+++..+...+. ......+|.+.++ +|.+..+.+++.+.+.++..+ .+++|+++||   +|  ||+.++.+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr---~g--~r~~~~~~~~~~   77 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKR---FG--TRRLFLISTFAF   77 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH---hC--cHHHHHHHHHHH
Confidence            34556666777776 4566566665555 899999999999999999888 7899999999   45  788888888888


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhcc
Q 013568          213 ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY  292 (440)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~  292 (440)
                      .++.++++ ..++...+++.|++.|++.+...+...+++.|++|+++|+++.+++.....   +|..+||.+++++.+++
T Consensus        78 ~~~~~~~~-~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~---~g~~~g~~~~~~l~~~~  153 (485)
T TIGR00711        78 TLGSLLCG-VAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVL---VAPALGPTLGGWIIENY  153 (485)
T ss_pred             HHHHHHHh-CcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---HHhhhhhccHhHhccCc
Confidence            88877777 778899999999999999999999999999999999999999999888877   99999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHh-heeeccccccCCCcCCC-----------------CCCCCCccchhhH-------------
Q 013568          293 GVRFVFGVTALLPLITSGV-AVLVKEQQVLGPSRRQN-----------------LPLGDPSFFESSK-------------  341 (440)
Q Consensus       293 gw~~~f~i~~~~~~~~~~~-~~~~~e~~~~~~~~~~~-----------------~~~~~~~~~~~~~-------------  341 (440)
                      |||+.|++.+++.++..+. .+++||+++.+..+.+.                 .+..+.+......             
T Consensus       154 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (485)
T TIGR00711       154 HWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAII  233 (485)
T ss_pred             CceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHH
Confidence            9999999988777665553 34556543221111000                 0000000000000             


Q ss_pred             ----HHHH-----HHHHHhcCcchhhhHHHHHhhhcccc-ccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 013568          342 ----QNMF-----QLWEAVKQPNVFLPTLFVFLWQATPH-SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNG  411 (440)
Q Consensus       342 ----~~~~-----~~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~  411 (440)
                          ...+     ...+.+++|.++...+..++...... .....+.+..+.+|+++.+.|+...+..++.+++.++.++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~  313 (485)
T TIGR00711       234 AFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGR  313 (485)
T ss_pred             HHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0000     01245677776665544444333111 1222233444678999999999999999999999999999


Q ss_pred             hhccCCchhHHHHHHHHHHHHh
Q 013568          412 FLKNVPLRKIFLANTIFGTALG  433 (440)
Q Consensus       412 l~~r~g~r~~l~~~~~~~~~~~  433 (440)
                      +.||+++|+.+..+.++.++..
T Consensus       314 l~~r~~~~~~~~~g~~~~~~~~  335 (485)
T TIGR00711       314 MGDKIDPRKLVTIGLILYAVGF  335 (485)
T ss_pred             HHhhcCcHHHHHHHHHHHHHHH
Confidence            9999999998877765555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.90  E-value=3.7e-22  Score=197.28  Aligned_cols=273  Identities=17%  Similarity=0.099  Sum_probs=189.3

Q ss_pred             HHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHH
Q 013568          137 AVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGAL  214 (440)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~  214 (440)
                      ..++..+..++. .......|.+. +++|.+..+.+++.+...++..+ +++.|+++||   +|  ||+.+..+.++..+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr---~g--~r~~~~~~~~~~~~   92 (406)
T PRK11551         19 LCFLVALLEGLDLQSAGVAAPRMA-QEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR---IG--RKRILIVSVALFGL   92 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--CchhHHHHHHHHHH
Confidence            344455555665 44555555555 45899999999999999999888 7889999999   45  77777777777777


Q ss_pred             HHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccch
Q 013568          215 SWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGV  294 (440)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw  294 (440)
                      +.+.+. +.++++.+++.|++.|++.+...+...+++.|++++++|+++.++...+..   +|..+++.+++.+.+..+|
T Consensus        93 ~~~~~~-~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~  168 (406)
T PRK11551         93 FSLATA-QAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVP---FGGALASVIGVLAAGDAAW  168 (406)
T ss_pred             HHHHHH-HhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHccccCH
Confidence            766666 678888999999999999999999999999999999999999998887777   9999999999888888999


Q ss_pred             HHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccc-c
Q 013568          295 RFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH-S  372 (440)
Q Consensus       295 ~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~-~  372 (440)
                      ++.|++.+++.++..+ ...++||+++..+.+.+.+         ..+...+..++..+.+..+...+..++...... .
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (406)
T PRK11551        169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK---------QRAPVLRALFGEGRATATLLLWISYFFTLIVLYFL  239 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch---------hhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999998776655544 4456777654322111000         001111111111111222222111111111000 1


Q ss_pred             cceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHH
Q 013568          373 DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFG  429 (440)
Q Consensus       373 ~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~  429 (440)
                      ....+.+. ++.|+++.+.+......+++.+++.++.+++.||+++|+.+..+.+..
T Consensus       240 ~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~  295 (406)
T PRK11551        240 LNWLPSLL-VGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGI  295 (406)
T ss_pred             HHHHHHHH-HhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            11111222 457999999999999999999999999999999999998887654443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.90  E-value=5.9e-22  Score=193.47  Aligned_cols=267  Identities=16%  Similarity=0.174  Sum_probs=184.8

Q ss_pred             HHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHH
Q 013568          140 MVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWS  217 (440)
Q Consensus       140 ~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~  217 (440)
                      +.++..++. +.....++.++++++|.|..+.|++.+++.+...+ +|++|.++||   +| +||.++..+.++..++.+
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr---~g-~r~~~~~~~~~~~~~~~~   79 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY---QG-DRKGLILFCCLLAALACL   79 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cC-CchHHHHHHHHHHHHHHH
Confidence            446666666 67778888888888999999999999988887666 8999999999   46 555555555555555555


Q ss_pred             HHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccc--hhhhHHhhhhhhhHHHHHHHHHHHhhhccchH
Q 013568          218 LMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVS--GSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVR  295 (440)
Q Consensus       218 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~  295 (440)
                      +++ .+++++.+++.+++.|.+.+...+...++..|..++++|+..  .+.......   +|.++||.+++++.+.+|||
T Consensus        80 ~~~-~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~ig~~~~~~l~~~~~~~  155 (375)
T TIGR00899        80 LFA-WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQIS---LAWVIGPPLAFWLALGFGFT  155 (375)
T ss_pred             HHH-hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHh---HHHHHhhhHHHHHHHhcccH
Confidence            555 667888888888888887777778888888898877766533  344443444   99999999999999989999


Q ss_pred             HHHHHHHHHHHHHHHh-heeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHh-hhcccccc
Q 013568          296 FVFGVTALLPLITSGV-AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFL-WQATPHSD  373 (440)
Q Consensus       296 ~~f~i~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~-~~~~~~~~  373 (440)
                      +.|++.+++.++..+. .+++||.+..++++++             +   .+.++.+++|.++...+..++ +.......
T Consensus       156 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (375)
T TIGR00899       156 VMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT-------------R---LEVRGLLASRDTRLLFVACTLMWGCNILYI  219 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCcccccC-------------c---chhhhhhcCcchHHHHHHHHHHHHHHHHHH
Confidence            9999998877666554 4457775432211100             0   011234556655543332222 11110011


Q ss_pred             ceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHH
Q 013568          374 SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGT  430 (440)
Q Consensus       374 ~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~  430 (440)
                      ...+.+..+++|.++.+.+.+.....+..+++.++.+++.||+++|+.+..+.++..
T Consensus       220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~  276 (375)
T TIGR00899       220 INMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGV  276 (375)
T ss_pred             hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHH
Confidence            222333446789999999988877777778888999999999999998877655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.90  E-value=1.1e-21  Score=192.91  Aligned_cols=272  Identities=15%  Similarity=0.154  Sum_probs=194.5

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .++.+++..++..+. ......++...++ +|.+..+.+++.+.+.+++.+ +|++|+++||   +|  ||++++.+.++
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr---~g--rr~vl~~~~~~   77 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS---FP--KGRVMFIANGI   77 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc---cC--CchhhHHHHHH
Confidence            566677777777775 4555566666655 899999999999999999988 8999999999   45  88888888887


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc
Q 013568          212 GALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA  291 (440)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~  291 (440)
                      ..++.++++ +..+.   ++.|+++|++.+...++..+++.|++|+++|++++++.+....   +|.++||.++|++.+.
T Consensus        78 ~~~~~~~~~-~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~---~~~~~Gp~lgG~l~~~  150 (393)
T PRK11195         78 KLLGCLLML-FGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTI---AAILLGTVLGGALADP  150 (393)
T ss_pred             HHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            777665555 33332   6789999999999999999999999999999999999887777   9999999999999875


Q ss_pred             cchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhh-hccc
Q 013568          292 YGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLW-QATP  370 (440)
Q Consensus       292 ~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~-~~~~  370 (440)
                       .|+..+.+.+.+.++..+..+.+||++.+++..+.+ .   .   ...++..+..+.++++|.+........++ ....
T Consensus       151 -~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  222 (393)
T PRK11195        151 -HAEAALAVCALIYLLAALFNLFIPRLGARRPGQSWN-P---I---ALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGA  222 (393)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCC-H---H---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHH
Confidence             488888777766555555556777754322111100 0   0   01112223344566777655443322221 1111


Q ss_pred             cccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHH
Q 013568          371 HSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANT  426 (440)
Q Consensus       371 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~  426 (440)
                      ........+..+.+|.++.+.|++....+++.++|.++.+++.||.++++.+..+.
T Consensus       223 ~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~  278 (393)
T PRK11195        223 TLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI  278 (393)
T ss_pred             HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence            11111223344678999999999999999999999999999999988887666654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.89  E-value=9e-22  Score=196.09  Aligned_cols=268  Identities=15%  Similarity=0.088  Sum_probs=177.9

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcC---CChhhhHHHHHhhhhhHH---H-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          137 AVAMVYFVQGVLGLARLAVNFYLKDDLH---LDPAETAVISGFSSLPWL---I-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g---~s~~~~g~~~s~~~l~~~---~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      ..+++++...++........+++.++++   .+..+.+...+++.+.+.   + ++++|+++||   +|  ||+.+..+.
T Consensus        26 ~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr---~G--rr~~l~~~~  100 (432)
T PRK10406         26 GASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK---HG--RKKSMLISV  100 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--cHHHHHHHH
Confidence            3445566667764334455556666664   555555554444555544   5 6788999999   45  888888988


Q ss_pred             HHHHHHHHHHHhhhchh--------HHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHH
Q 013568          210 LLGALSWSLMATIVESK--------YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVS  281 (440)
Q Consensus       210 ~~~~~~~~~~~~~~~~~--------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig  281 (440)
                      ++..++.++++ +.+++        ..++++|+++|++.+...+...+++.|++|+++|++..++...+..   .|.+++
T Consensus       101 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~---~G~~~~  176 (432)
T PRK10406        101 CMMCFGSLVIA-CLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLI---GGQLLA  176 (432)
T ss_pred             HHHHHHHHHHh-hcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHH---HHHHHH
Confidence            88888888777 55544        3578999999999999999999999999999999988777766655   677777


Q ss_pred             HHHHHHhh--------hccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcC
Q 013568          282 SYFSGSMV--------DAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQ  353 (440)
Q Consensus       282 ~~i~g~l~--------~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  353 (440)
                      +.+...+.        ..+|||++|++.+++.++.+.+...+||++..++++.            .   .....++++++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~------------~---~~~~~~~l~~~  241 (432)
T PRK10406        177 LLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRAL------------K---EAGSLKGLWRN  241 (432)
T ss_pred             HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhh------------c---ccccHHHHHhh
Confidence            66654443        2579999999988777665545445666543211000            0   01123445667


Q ss_pred             cchhhhHHHHHhh-hccc-cccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHH
Q 013568          354 PNVFLPTLFVFLW-QATP-HSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIF  428 (440)
Q Consensus       354 ~~~~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~  428 (440)
                      ++.+...+..++. .... ......+.+..+.+|++..+.+.......++..++..+.|++.||+++|+.+....++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~  318 (432)
T PRK10406        242 RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSL  318 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            7665544322221 1111 0111122333356899988888888877777788888999999999999887765543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.89  E-value=1e-22  Score=199.46  Aligned_cols=260  Identities=17%  Similarity=0.135  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHH
Q 013568          151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSA  229 (440)
Q Consensus       151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~  229 (440)
                      .....| ++++++|++..+.+++.+++.++..+ ++++|+++||   +|  ||+.+..+.++..++.++++ +.++.+.+
T Consensus        13 ~~~~~~-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~g--~r~~~~~~~~~~~~~~~~~~-~~~~~~~~   85 (399)
T TIGR00893        13 LSFAAP-MLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR---FG--ARKTLAVFIVIWGVFTGLQA-FAGAYVSL   85 (399)
T ss_pred             hhHhHH-HHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh---cC--cceeeHHHHHHHHHHHHHHH-HHcCHHHH
Confidence            333344 46666999999999999999999888 8899999999   45  67777778777777777776 67788999


Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 013568          230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITS  309 (440)
Q Consensus       230 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~  309 (440)
                      +++|++.|++.+...+....++.|++|+++|++..++......   +|.++++.+++++.+..+||+.|++.+++.++..
T Consensus        86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQG---LGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998888777   9999999999999999999999999888777665


Q ss_pred             Hh-heeeccccccCCCcCCC---CCCC----CCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccccccc-eeeeee
Q 013568          310 GV-AVLVKEQQVLGPSRRQN---LPLG----DPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDS-AMFYFT  380 (440)
Q Consensus       310 ~~-~~~~~e~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~  380 (440)
                      +. .++.+|++..+....++   ...+    +....+..+......++.+++|+++...+..+++........ ....+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (399)
T TIGR00893       163 VLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYL  242 (399)
T ss_pred             HHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            54 44556554321110000   0000    000000111122335567788887776655555444221111 123334


Q ss_pred             eccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchh
Q 013568          381 TNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRK  420 (440)
Q Consensus       381 ~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~  420 (440)
                      .+.+|.++.+.+.+.....++.+++.++.+++.||+++|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       243 VQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4668999999999999999999999999999999999885

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.89  E-value=6e-22  Score=200.45  Aligned_cols=281  Identities=12%  Similarity=0.075  Sum_probs=178.5

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhh-hHH-----HHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhh
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAE-TAV-----ISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLV  206 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~-~g~-----~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~  206 (440)
                      ++...++++..+++ ..+.... +++.++++.+... .++     +.++..+++.+ ++++|+++||   +|  ||+.+.
T Consensus        18 ~~~~~~g~~~~~~d~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr---~G--rr~~l~   91 (490)
T PRK10642         18 ITAASLGNAMEWFDFGVYGFVA-YALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK---YG--RQKILA   91 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cc--cHHHHH
Confidence            44556677777777 4444444 4556657543322 122     13556677777 7788999999   45  888899


Q ss_pred             HHHHHHHHHHHHHHhhhchhHH--------HHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHH
Q 013568          207 LSGLLGALSWSLMATIVESKYS--------AALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGG  278 (440)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~  278 (440)
                      ++.+++.++.++++ +++++..        ++++|+++|++.+...+...+++.|++|+++|++..++...+..   +|.
T Consensus        92 ~~~~l~~i~~~~~a-~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~---~G~  167 (490)
T PRK10642         92 ITIVIMSISTFCIG-LIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSI---AGF  167 (490)
T ss_pred             HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHH---HHH
Confidence            99999999988888 6777653        78999999999999999999999999999999998888776665   677


Q ss_pred             HHHHHHHHHhh--------hccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHH
Q 013568          279 IVSSYFSGSMV--------DAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEA  350 (440)
Q Consensus       279 ~ig~~i~g~l~--------~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (440)
                      .+|+.+...+.        ..+|||++|++.+++.++.+++..++||++...+..++.++..++...+..+..   +.+.
T Consensus       168 ~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  244 (490)
T PRK10642        168 VLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVS---FKEI  244 (490)
T ss_pred             HHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCC---HHHH
Confidence            66665554432        257999999998766665555556788875421111000000000000000111   1222


Q ss_pred             hc-CcchhhhH-HHHHhhhccc-cccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHH
Q 013568          351 VK-QPNVFLPT-LFVFLWQATP-HSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTI  427 (440)
Q Consensus       351 l~-~~~~~~~~-l~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~  427 (440)
                      ++ +++.+... ...++..... ......+.++.+.+|++....++......++.+++.++.+++.||+|||+.+..+.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  324 (490)
T PRK10642        245 ATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSV  324 (490)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            22 22222211 1111111110 011222333345678888877777778888999999999999999999998877654


Q ss_pred             H
Q 013568          428 F  428 (440)
Q Consensus       428 ~  428 (440)
                      +
T Consensus       325 ~  325 (490)
T PRK10642        325 A  325 (490)
T ss_pred             H
Confidence            3

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.89  E-value=4.6e-22  Score=193.96  Aligned_cols=265  Identities=15%  Similarity=0.110  Sum_probs=189.5

Q ss_pred             HHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHH
Q 013568          142 YFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLM  219 (440)
Q Consensus       142 ~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~  219 (440)
                      |+...+. ......+| ++.+++|++..+.+++.++..+++.+ ++++|+++||   +|  ||+.++.+.++..++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr---~g--~r~~~~~~~~~~~~~~~~~   77 (379)
T TIGR00881         4 YAAYYLVRKNFALAMP-YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR---SN--PRVFLPIGLILCAIVNLFF   77 (379)
T ss_pred             hhHHHHhHHhhhhhhH-HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh---hC--CeehhHHHHHHHHHHHHHH
Confidence            4444444 34444445 45566899999999999999999888 8899999999   45  7778888888888887777


Q ss_pred             HhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHH-HHHHHhhhccchHHHH
Q 013568          220 ATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSS-YFSGSMVDAYGVRFVF  298 (440)
Q Consensus       220 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~-~i~g~l~~~~gw~~~f  298 (440)
                      + +.++.+.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..   +|.++++ .+++.+.+..+|++.|
T Consensus        78 ~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~  153 (379)
T TIGR00881        78 G-FSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHN---VGGGLLPPLVLFGIAELYSWHWVF  153 (379)
T ss_pred             H-HhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccch---hHHHHHHHHHHHHHHhcCCchhHH
Confidence            7 677888999999999999999999999999999999999999999888777   9999999 5777777788999999


Q ss_pred             HHHHHHHHHHHH-hheeeccccccCCCcCCC----CCCCC--CccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccc
Q 013568          299 GVTALLPLITSG-VAVLVKEQQVLGPSRRQN----LPLGD--PSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH  371 (440)
Q Consensus       299 ~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~  371 (440)
                      ++.+++.++..+ ..++.+|++..+...+.+    ++.+.  +...+..+......++.+++|.+|...+..++......
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (379)
T TIGR00881       154 IVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRT  233 (379)
T ss_pred             HHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            998877766544 455666654322111100    00000  00000011111234556788888776655444333111


Q ss_pred             -ccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 013568          372 -SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNV  416 (440)
Q Consensus       372 -~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~  416 (440)
                       .......+..+.+|+++.+.+.......++.+++.++.+++.||.
T Consensus       234 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~  279 (379)
T TIGR00881       234 GILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKL  279 (379)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence             122223334467899999999999999999999999999999975

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.89  E-value=7.9e-22  Score=194.01  Aligned_cols=253  Identities=13%  Similarity=0.094  Sum_probs=184.4

Q ss_pred             hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHH
Q 013568          150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYS  228 (440)
Q Consensus       150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~  228 (440)
                      .....+|. +++++|+|..+.+++.+++.+++.+ +++.|+++||   +|  ||+++..+..+..++.+.++ ++++++.
T Consensus        27 ~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr---~G--~r~~l~~~~~l~~~~~~~~~-~a~~~~~   99 (393)
T PRK09705         27 SVGPLLPQ-LRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH---VS--ERRSVAISLLLIAVGALMRE-LYPQSAL   99 (393)
T ss_pred             ccchhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH---hC--chHHHHHHHHHHHHHHHHHH-HCcchHH
Confidence            34445555 4455999999999999999999988 8899999999   45  88899999999999988888 7889999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHH
Q 013568          229 AALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY-GVRFVFGVTALLPLI  307 (440)
Q Consensus       229 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~-gw~~~f~i~~~~~~~  307 (440)
                      +++.|++.|++.+...+....++.+++| ++|+++++++..+..   +|..+|+.+++++.++. +||+.+.+.++..++
T Consensus       100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~---~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~  175 (393)
T PRK09705        100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALM---GGGGLGAAITPWLVQHSETWYQTLAWWALPAVV  175 (393)
T ss_pred             HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            9999999999999988888999999987 778988888887766   89999999999888875 899998776655544


Q ss_pred             HHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccc-ccceeeeeeeccCCC
Q 013568          308 TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH-SDSAMFYFTTNELGF  386 (440)
Q Consensus       308 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~g~  386 (440)
                      ..+..++..++++.++++++             .    ...+.+++++.|...+..++...... .....+.+. +++|+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~-------------~----~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l-~~~g~  237 (393)
T PRK09705        176 ALFAWWWQSAREVASSHKTT-------------T----TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFY-IEIGA  237 (393)
T ss_pred             HHHHHHHHhcCCCccccCCC-------------c----CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Confidence            43333322221111110000             0    01233456666655443333322111 111122223 34799


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          387 TPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       387 s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      +..++|......+++.++|.++.+++.||+++|+.++.+..+.++
T Consensus       238 s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~  282 (393)
T PRK09705        238 SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLV  282 (393)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888776555443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.89  E-value=1.6e-21  Score=189.41  Aligned_cols=240  Identities=13%  Similarity=0.020  Sum_probs=164.2

Q ss_pred             hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHH
Q 013568          150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYS  228 (440)
Q Consensus       150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~  228 (440)
                      .+...+|.+. +++|+|.++.|++.+.+.+++.+ +++.|+++||   +|  ||+++..+......+..... ..+++..
T Consensus         9 ~~~~~lp~i~-~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr---~g--rr~~~~~~~~~~~~~~~~~~-~~~~~~~   81 (368)
T TIGR00903         9 TFSPVLSLVA-EDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR---AF--KRWFLFGSLATFAAAAGRLL-DPFNYEW   81 (368)
T ss_pred             HHHhhHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cc--chHHHHHHHHHHHHHHHHHH-HhccHHH
Confidence            3444455544 45999999999999999999988 8889999999   45  66665555444434332222 3368889


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 013568          229 AALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLIT  308 (440)
Q Consensus       229 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~  308 (440)
                      ++++|++.|++.+.. ......++|++|+++|+++.++...+..   +|.++++.+++++.+++|||+.|++.+++.++.
T Consensus        82 l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~---lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~  157 (368)
T TIGR00903        82 LLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMY---LGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAG  157 (368)
T ss_pred             HHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence            999999999999864 4566667999999999999999988888   999999999999999999999999988877665


Q ss_pred             HH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccccccee-eeeeeccCCC
Q 013568          309 SG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAM-FYFTTNELGF  386 (440)
Q Consensus       309 ~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~g~  386 (440)
                      .+ ..+++||+++.+.+.  .          ..++..++.++++++|.+|...+..++..........+ +.++ ++.|+
T Consensus       158 ~~~~~~~lp~~p~~~~~~--~----------~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L-~~~g~  224 (368)
T TIGR00903       158 IILVLAALPALPFQAAEG--F----------GFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAAL-RPAGL  224 (368)
T ss_pred             HHHHHHHcCCCCCCCCCC--c----------chHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCC
Confidence            55 455788865432110  0          00112245667889999888876655544422222222 2333 34677


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 013568          387 TPEFLGRVKFVTSVASLLGVGLYNGFLKNVP  417 (440)
Q Consensus       387 s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g  417 (440)
                      +.. .+.......++..++   .+++.||..
T Consensus       225 s~~-~~~~~~l~~~~g~~g---~~~~~d~~~  251 (368)
T TIGR00903       225 EDI-AGDAVALAILAGLIG---VAVIPDRVA  251 (368)
T ss_pred             ChH-HHHHHHHHHHHHHHH---HHHhhHHhh
Confidence            754 555554444444444   355566554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10504 putative transporter; Provisional

Probab=99.89  E-value=6.5e-22  Score=199.43  Aligned_cols=290  Identities=14%  Similarity=0.096  Sum_probs=206.5

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .++.+++.+++..+. +....++|.+.++ +|.+..+.+++.+.+.++..+ .+++|+++||   +|  ||++++.+.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~g--~r~~~~~~~~~   84 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADR---VG--VRNIFFTAIVL   84 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--hHHHHHHHHHH
Confidence            566777777777776 5677788888776 899999999999888888777 8899999999   45  67777777777


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc
Q 013568          212 GALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA  291 (440)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~  291 (440)
                      ..++.++++ +.++.+.+++.|++.|++.+...+...+++.|.+|+++|++..++......   +|..+||.++|++.++
T Consensus        85 ~~~~~~~~~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~g~l~~~  160 (471)
T PRK10504         85 FTLGSLFCA-LSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQ---VGPLLGPALGGLLVEY  160 (471)
T ss_pred             HHHHHHHHH-HhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHhh
Confidence            777766666 667888899999999999999988999999999999999988888776666   9999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHhhe-eeccccccCCCcCCC----------------CCCCCCccchh---------------
Q 013568          292 YGVRFVFGVTALLPLITSGVAV-LVKEQQVLGPSRRQN----------------LPLGDPSFFES---------------  339 (440)
Q Consensus       292 ~gw~~~f~i~~~~~~~~~~~~~-~~~e~~~~~~~~~~~----------------~~~~~~~~~~~---------------  339 (440)
                      .|||+.|++...+..+..+... ..|+.+....+.+..                ...+.......               
T Consensus       161 ~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (471)
T PRK10504        161 ASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLL  240 (471)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHH
Confidence            9999999998877666555333 334332211100000                00000000000               


Q ss_pred             --hHHH----HHHHHHHhcCcchhhhHHHHHhhhcccccc-ceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 013568          340 --SKQN----MFQLWEAVKQPNVFLPTLFVFLWQATPHSD-SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGF  412 (440)
Q Consensus       340 --~~~~----~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l  412 (440)
                        .++.    .....++++||.++..++..+++....... ....+|....+|.++...++...+..++.+++..+.+++
T Consensus       241 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l  320 (471)
T PRK10504        241 YLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQV  320 (471)
T ss_pred             HHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0000    000124678888777665555544421111 122344444689999999999999999999998999999


Q ss_pred             hccCCchhHHHHHHHHHHHHh
Q 013568          413 LKNVPLRKIFLANTIFGTALG  433 (440)
Q Consensus       413 ~~r~g~r~~l~~~~~~~~~~~  433 (440)
                      .||+|+|+++..+.++.++..
T Consensus       321 ~~r~g~~~~~~~~~~~~~~~~  341 (471)
T PRK10504        321 VNRFGYRRVLVATTLGLALVS  341 (471)
T ss_pred             HHHcCchHHHHHHHHHHHHHH
Confidence            999999999887766555443

>PRK11043 putative transporter; Provisional

Probab=99.89  E-value=3.6e-21  Score=189.96  Aligned_cols=250  Identities=14%  Similarity=0.139  Sum_probs=181.3

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY  227 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~  227 (440)
                      +.+.+.++.+ ++++|.+.++.+++.+++.+++.+ ++++|+++||   +|  ||+.+..+.++..++.+++. +.++.+
T Consensus        23 ~~~~p~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr---~g--~r~~~~~~~~~~~~~~~~~~-~~~~~~   95 (401)
T PRK11043         23 DMYLPAFKAI-QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR---YG--RKPVLLAGLSLFALGSLGML-WVESAA   95 (401)
T ss_pred             HHHHhhHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh---cC--CcHHHHHHHHHHHHHHHHHH-HhcCHH
Confidence            4555455554 455899999999999999999888 7899999999   45  77788888777777776666 678888


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      .+++.|++.|++.+...+...+++.|.++++++++..+.......   +|..++|.+++++.+.+|||+.|++.+++.++
T Consensus        96 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~  172 (401)
T PRK11043         96 QLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVA---LSPALAPLLGAWLLNHFGWQAIFATLFAITLL  172 (401)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            899999999999888877888999999998887766555554444   89999999999999999999999998887777


Q ss_pred             HHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcc-ccccceeeeeeeccCCC
Q 013568          308 TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQAT-PHSDSAMFYFTTNELGF  386 (440)
Q Consensus       308 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~g~  386 (440)
                      ..+..++++|++..++  +              ++...+.++.+++|..+...+...+.... .......+++ .+++|+
T Consensus       173 ~~~~~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~  235 (401)
T PRK11043        173 LILPTLRLKPSKKARK--Q--------------SQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFI-LEQMGY  235 (401)
T ss_pred             HHHHHHHcCCCCCccc--c--------------chHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHH-HHHcCC
Confidence            6665555555432111  0              01123455677787765433222221110 0011111222 245799


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHH
Q 013568          387 TPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLAN  425 (440)
Q Consensus       387 s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~  425 (440)
                      ++.+.|+......++.++|.++.+++.||+++|+.+...
T Consensus       236 s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~  274 (401)
T PRK11043        236 SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWL  274 (401)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            999999988888889999999999999999988865443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.88  E-value=2e-21  Score=193.91  Aligned_cols=273  Identities=18%  Similarity=0.221  Sum_probs=191.0

Q ss_pred             HHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-Hhhhhhhcccc-CcCCCCcchhhhHHHHHHHHHHHHH
Q 013568          143 FVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSL-PLFGYRRRSYLVLSGLLGALSWSLM  219 (440)
Q Consensus       143 ~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~-~~~G~~rr~~l~~~~~~~~~~~~~~  219 (440)
                      +...+. +.....+++++.+++|+++.++|++.++..+..++ +|+.|+++||+ +++| |||++++.+.+..+++.+++
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~G-rrr~~i~~~~~~~~i~~~~~   87 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWG-KFRPWLLIGAIPFSIVLVLL   87 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCC-CcchhHHHhHHHHHHHHHHH
Confidence            333443 56677888899998999999999999999999888 99999999998 5688 88999999888887776666


Q ss_pred             Hhhhch------hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhc-ccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh--
Q 013568          220 ATIVES------KYSAALSILLGSLSVAFSDVVVDSMVVERAR-GESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD--  290 (440)
Q Consensus       220 ~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~--  290 (440)
                      . ..++      ...+++.+++.+++.+....+..++..|+.+ +++|++..++...+..   +|.++++.+.+.+..  
T Consensus        88 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~---~g~~l~~~~~~~l~~~~  163 (437)
T TIGR00792        88 F-TTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGAT---LGGLLVAVIVLPLVSYF  163 (437)
T ss_pred             H-hCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence            5 3332      2345666778888888888888999999884 5788887777766655   777776666655542  


Q ss_pred             -----ccchHHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHH
Q 013568          291 -----AYGVRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF  364 (440)
Q Consensus       291 -----~~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  364 (440)
                           ..||++.+.+.+++.++..+ ..++.+|++...+.++++    +    ..   ..+..++++++|.++..++..+
T Consensus       164 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~----~----~~---~~~~~~~l~~~~~~~~~~~~~~  232 (437)
T TIGR00792       164 GGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEK----K----LS---LKQIFKALFKNDQLLILCLAYL  232 (437)
T ss_pred             CCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccccc----C----CC---HHHHHHHHhCCHHHHHHHHHHH
Confidence                 46899999998888776655 445667654211111000    0    01   1233456678888777665544


Q ss_pred             hhhcccc-ccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 013568          365 LWQATPH-SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTAL  432 (440)
Q Consensus       365 ~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~  432 (440)
                      +...... ......++....+| ++...+.+.....++.+++.++.+++.||+|+|+.+..+.++.++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~  300 (437)
T TIGR00792       233 FYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLG  300 (437)
T ss_pred             HHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            4333211 11222344444455 5566777777788999999999999999999999888776555443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.88  E-value=5.4e-21  Score=192.53  Aligned_cols=248  Identities=15%  Similarity=0.079  Sum_probs=167.8

Q ss_pred             HHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 013568          157 FYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILL  235 (440)
Q Consensus       157 ~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  235 (440)
                      +.+.+++|++..+.+++.+.+.+++.+ +++.|+++||   +|  ||+++..+.++..++.++.+ +.++...++++|++
T Consensus        60 ~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr---~G--~r~~~~~~~~~~~~~~~~~~-~~~s~~~l~~~r~l  133 (476)
T PLN00028         60 PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL---YG--PRYGSAFLLMLTAPAVFCMS-LVSSATGFIAVRFF  133 (476)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--ChHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHH
Confidence            345566999999999998888888887 7899999999   45  66777777777777776666 66788888899999


Q ss_pred             HHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhh----h-----ccchHHHHHHHHHHHH
Q 013568          236 GSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV----D-----AYGVRFVFGVTALLPL  306 (440)
Q Consensus       236 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~----~-----~~gw~~~f~i~~~~~~  306 (440)
                      .|++.+... ....++.|++|+++|+++.++......   +|..+++.+.+.+.    +     ..|||+.|++.+++.+
T Consensus       134 ~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~---~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l  209 (476)
T PLN00028        134 IGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGN---LGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHI  209 (476)
T ss_pred             HHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Confidence            999887653 455678999999999999888765444   56666655554432    2     2589999999998887


Q ss_pred             HHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcc-ccccceeeeeeeccCC
Q 013568          307 ITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQAT-PHSDSAMFYFTTNELG  385 (440)
Q Consensus       307 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~g  385 (440)
                      +..+..++++++++..+.++..++  .+   .......+.+++.++++++|...+..++.... .........++.+.+|
T Consensus       210 ~~~l~~~~~~~~~p~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g  284 (476)
T PLN00028        210 IMGILVLTLGQDLPDGNYRELKKS--GT---MPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFG  284 (476)
T ss_pred             HHHHHHHHHcCcCCCCchhhHHhc--Cc---cccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Confidence            766654444433221110000000  00   00011123456677888877665433322111 1111112233345689


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHhhccCCch
Q 013568          386 FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLR  419 (440)
Q Consensus       386 ~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r  419 (440)
                      +++.+++.+.....++.+++.+++|++.||+++|
T Consensus       285 ~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        285 LSLETAGAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            9999999999999999999999999999998765

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.88  E-value=5.9e-21  Score=189.42  Aligned_cols=277  Identities=14%  Similarity=0.092  Sum_probs=194.2

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .+..+.+..+...+. +.....+|.+.++ ++.+..+.|++.+...+++.+ +++.|+++||   +|  ||+.+..+.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr---~g--~~~~l~~~~~~   91 (417)
T PRK10489         18 AFRAVFIARFISIFGLGLLGVAVPVQIQM-MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR---YD--RKKLILLARGT   91 (417)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh---cC--CceEEEehHHH
Confidence            344444455555555 5666667777666 688999999999999999988 8899999999   45  66677766665


Q ss_pred             HHHHHHHHHh----hhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHH
Q 013568          212 GALSWSLMAT----IVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS  287 (440)
Q Consensus       212 ~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~  287 (440)
                      ..++...++.    ..++++.+++.+++.|++.+...+...+++.|+.|+++|+++.++......   +|..+||.+++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~l~g~  168 (417)
T PRK10489         92 CGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVR---LGSVISPALGGL  168 (417)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHh---HHHHhHHHHHHH
Confidence            5555443321    135667788899999999988888889999999999999998888877766   999999999999


Q ss_pred             hhhccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhh
Q 013568          288 MVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQ  367 (440)
Q Consensus       288 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~  367 (440)
                      +.+..||++.|++.++..++..+..+++|+.+.+++++  +         +..++..+..+..+++|.++...+..++..
T Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (417)
T PRK10489        169 LIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPR--E---------HPLRSLLAGFRFLLASPVVGGIALLGGLLT  237 (417)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc--c---------cchHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            99888999999988877776666666667654321110  0         011222233445567777655443333322


Q ss_pred             ccccccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHH
Q 013568          368 ATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGT  430 (440)
Q Consensus       368 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~  430 (440)
                      ...........+..+.+|.++...|++....+++.+++.++.+++.||.++++.+..+.++.+
T Consensus       238 ~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~  300 (417)
T PRK10489        238 MASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSF  300 (417)
T ss_pred             HHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHH
Confidence            211111122233335589999999999999999999999999999998777766666544433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.88  E-value=7.7e-21  Score=186.31  Aligned_cols=275  Identities=13%  Similarity=0.059  Sum_probs=187.7

Q ss_pred             HHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHH
Q 013568          136 FAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA  213 (440)
Q Consensus       136 ~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~  213 (440)
                      +.+.+.++..... +...+.+|.|+++ +|+|..++|++.++..+...+ +|++|+++||+   | |++...........
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~-~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~---~-~~~~~~~~~~~~~~   81 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLKG-IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA---N-HIIIALRLLALASA   81 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C-cHHHHHHHHHHHHH
Confidence            3455666666665 6778889999977 799999999999999888877 89999999993   4 32221111111111


Q ss_pred             HHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccc
Q 013568          214 LSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG  293 (440)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~g  293 (440)
                      +..+.+...+++++.+++.+++.+.+.+...+...++..+.  .++|++..+.......   +|.+++|.++|++.+++|
T Consensus        82 l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~s---lG~~~g~~l~g~l~~~~g  156 (382)
T TIGR00902        82 IFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGS---AAFIIGSALFGGLIGMFD  156 (382)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHH---HHHHHHHHHHHHHHHHcC
Confidence            22222222457788888899989988888778888887654  3566777777665555   999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccccc
Q 013568          294 VRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSD  373 (440)
Q Consensus       294 w~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~  373 (440)
                      ||+.|++.++..++..+.. .+++++++++++++.           .....++..+.+|+|++|...+..++........
T Consensus       157 ~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~  224 (382)
T TIGR00902       157 EQNILAILTAGLAFMLIGF-LIKPTIPPKDAIPED-----------ESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAY  224 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHH-HcCCCCCCCcccccc-----------ccccchhHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            9999988766533333333 333332111111000           0011234567789999888776666544422111


Q ss_pred             cee-eeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013568          374 SAM-FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALG  433 (440)
Q Consensus       374 ~~~-~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~  433 (440)
                      ..+ ..+. +++|.++..+|.+..+..++.+++.++.+++.||+|.|+.+..+.++..+..
T Consensus       225 ~~~~~~~l-~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~  284 (382)
T TIGR00902       225 YGFSAIYW-QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRW  284 (382)
T ss_pred             HHHHHHHH-HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHH
Confidence            122 2222 5689999999999999999999999999999999999999888777766543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.88  E-value=4.2e-21  Score=188.56  Aligned_cols=269  Identities=10%  Similarity=0.068  Sum_probs=176.6

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHH-HHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLA-VNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~-l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      +.+.+....+..++. ...... .+.+.++++|+|.++.+++.++..+.+.+ +.+.|++.||   +|  .|+++.++.+
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr---~G--~R~v~~~~~l  108 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI---FG--GRRWTVFSTA  108 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--ChHHHHHHHH
Confidence            444444444544444 444444 44444546999999999999999999888 6888999999   56  5556677777


Q ss_pred             HHHHHHHHHHhhh-----chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHH
Q 013568          211 LGALSWSLMATIV-----ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS  285 (440)
Q Consensus       211 ~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~  285 (440)
                      +..+..+.++ ++     ++++.+++.|++.|++ +...+.....+++++|+++||++.++.....   ++|..+++++.
T Consensus       109 l~~i~~~~~~-~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G---~~G~~l~~~l~  183 (462)
T PRK15034        109 ILIIPCVWLG-IAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLG---NLGVSVMQLVA  183 (462)
T ss_pred             HHHHHHHHHH-HHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHH---hhHHHHHHHHH
Confidence            7777766666 43     6888999999999998 5577788999999999999999999885222   25555444444


Q ss_pred             HHhh-----h-------------ccchHHHHHHHHHHHHHHHHhhe-eeccccccCCCcCCCCCCCCCccchhhHHHHHH
Q 013568          286 GSMV-----D-------------AYGVRFVFGVTALLPLITSGVAV-LVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ  346 (440)
Q Consensus       286 g~l~-----~-------------~~gw~~~f~i~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (440)
                      ..+.     .             ..+|+.++++.+++.++..+..+ +.++.+.    .               +...++
T Consensus       184 p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~----~---------------~~~~~~  244 (462)
T PRK15034        184 PLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS----S---------------RASIAD  244 (462)
T ss_pred             HHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc----c---------------ccCHHH
Confidence            3322     2             33478877777776666655444 3333221    0               112345


Q ss_pred             HHHHhcCcchhhhHHHHHh-hhccccccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHH
Q 013568          347 LWEAVKQPNVFLPTLFVFL-WQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLAN  425 (440)
Q Consensus       347 ~~~~l~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~  425 (440)
                      ..+.+|+|.+|..+++.++ |.........++++..+.+  +............+...++..++|+++||+|+++++.++
T Consensus       245 ~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~  322 (462)
T PRK15034        245 QLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLIN  322 (462)
T ss_pred             HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHH
Confidence            6678999999988766555 4332111112223333333  332222223344567778889999999999999998887


Q ss_pred             HHHHHHHh
Q 013568          426 TIFGTALG  433 (440)
Q Consensus       426 ~~~~~~~~  433 (440)
                      .++.+++.
T Consensus       323 ~i~~~i~~  330 (462)
T PRK15034        323 FIFMAIFS  330 (462)
T ss_pred             HHHHHHHH
Confidence            76555544

>PRK03699 putative transporter; Provisional

Probab=99.88  E-value=2.7e-21  Score=190.40  Aligned_cols=271  Identities=10%  Similarity=0.102  Sum_probs=190.3

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG  212 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~  212 (440)
                      .+...+.++..+.. ......+|.+. +++|+|.++.+++.+...+++.+ +++.|+++||   +|  ||+.+..+.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~g~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr---~g--~r~~~~~~~~~~   82 (394)
T PRK03699          9 TWISFLSYALTGALVIVTGMVMGPIA-EYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI---IP--LKRQLIFGFALM   82 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hh--HHHHHHHHHHHH
Confidence            44455566666555 45555566655 55899999999999999999888 7888999999   45  777788887777


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh-c
Q 013568          213 ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD-A  291 (440)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~-~  291 (440)
                      .++.++++ +.++.+.++++|++.|++.+...+....++.|++|+++|+.+.+.......   +|..++|.+.+++.. .
T Consensus        83 ~i~~~l~~-~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~---~g~~~~~~~~~~l~~~~  158 (394)
T PRK03699         83 ILAVAGLM-FSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFS---MAGMIFPIIAAYLLARS  158 (394)
T ss_pred             HHHHHHHH-HcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcc
Confidence            77777777 678888889999999999998888888999999999889888777766666   888999999888764 5


Q ss_pred             cchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccc
Q 013568          292 YGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH  371 (440)
Q Consensus       292 ~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~  371 (440)
                      .|||+.|.+.+++.++..+..++.+.++.. ++++++ .   +   +.    .    +...++.++...+..+++.....
T Consensus       159 ~gw~~~f~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~-~---~---~~----~----~~~~~~~~~~~~~~~~~~~~~~~  222 (394)
T PRK03699        159 IEWYWVYACIGLVYVAIFILTLFSEFPALG-KHAPKA-D---K---PV----A----KEKWGIGVLFLAIAALLYILAQL  222 (394)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhcCCcccc-ccCccc-c---C---cc----c----cccCChHHHHHHHHHHHHHHHHH
Confidence            799999999887776655443332211111 110000 0   0   00    0    00123445544443344333111


Q ss_pred             c-cceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          372 S-DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       372 ~-~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      . ....+.+..+.+|+++.+.+.+.....++.++|.++.+++.||+++|+.+.....+.++
T Consensus       223 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~  283 (394)
T PRK03699        223 TFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALV  283 (394)
T ss_pred             HHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence            1 12223344467899999999999999999999999999999999999888776554443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.88  E-value=7.9e-21  Score=187.50  Aligned_cols=280  Identities=12%  Similarity=0.107  Sum_probs=198.1

Q ss_pred             cHHHHHHHHHHHHHhh-hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVLG-LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .++.++..++..++.. .....+ +.+++++|++..+.|++.+.+.+++.+ .++.|++.||   +|  ||+.++++.++
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~-~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r---~G--~r~~~~~g~~l   77 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMV-PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK---LS--YKAGILLGLFL   77 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--chHHHHHHHHH
Confidence            4566777788888874 444444 455667999999999999999999988 7899999999   45  88888888888


Q ss_pred             HHHHHHHHHh--hhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhh
Q 013568          212 GALSWSLMAT--IVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV  289 (440)
Q Consensus       212 ~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~  289 (440)
                      .+++..++..  ..++++.+++.+++.|+|.+...+..+.++.++.|+++++++.++.+....   +|..+||.+++.+.
T Consensus        78 ~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---lG~~~g~~i~~~l~  154 (410)
T TIGR00885        78 YALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNP---FGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            8877666431  235788889999999999999999999999999999999988888887777   99999999988774


Q ss_pred             h--------------------------ccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHH
Q 013568          290 D--------------------------AYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQN  343 (440)
Q Consensus       290 ~--------------------------~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (440)
                      .                          ..+||++|++.+++.++..+...+.+.++.+++++++          +..+  
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~~~----------~~~~--  222 (410)
T TIGR00885       155 LSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSDAKQ----------ISFS--  222 (410)
T ss_pred             hcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc----------ccch--
Confidence            2                          2469999999888766655443333322211110000          0111  


Q ss_pred             HHHHHHHhcCcchhhhHHHHHhhhcccccccee-eeeeec-cCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhH
Q 013568          344 MFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAM-FYFTTN-ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKI  421 (440)
Q Consensus       344 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~-~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~  421 (440)
                       .+..+.+|+|.++...+..++|...+.....+ ..|..+ ..+.+....+........+..+|+++++++.||+++|+.
T Consensus       223 -~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~  301 (410)
T TIGR00885       223 -ASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKV  301 (410)
T ss_pred             -hhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence             12345678888887777777776643222111 111111 224444445555666667888999999999999999998


Q ss_pred             HHHHHHHHHHHhhh
Q 013568          422 FLANTIFGTALGMT  435 (440)
Q Consensus       422 l~~~~~~~~~~~~~  435 (440)
                      +.++.++++++.++
T Consensus       302 l~i~~~~~~~~~ll  315 (410)
T TIGR00885       302 LMAYAIIGMALCLG  315 (410)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777766665543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00897 2A0118 polyol permease family

Probab=99.88  E-value=6.9e-21  Score=187.98  Aligned_cols=270  Identities=14%  Similarity=0.059  Sum_probs=184.8

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .+....+..+..... +.....+++++++ +|++..+.|++.+.+.+++.+ ++++|+++||   +|  ||+.+..+..+
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr---~g--~k~~l~~~~~~   87 (402)
T TIGR00897        14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKA-LGLSPQQSASAFTLYGIAAAISAWISGVVAEI---IG--PLKTMMIGLLL   87 (402)
T ss_pred             hhhHHHHHHHHHHHhhhhHHHhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH---cC--cHHHHHHHHHH
Confidence            344455555554444 4556677888866 799999999999999999888 8999999999   45  77777777777


Q ss_pred             HHHHHHHHHh--h-hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHH-HHHHHHHHH
Q 013568          212 GALSWSLMAT--I-VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGG-IVSSYFSGS  287 (440)
Q Consensus       212 ~~~~~~~~~~--~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~-~ig~~i~g~  287 (440)
                      ..++.+++..  . ..+.+.+++.|++.|++.+...+...+.+.+.+++++|++++++...+..   +|. +++|.++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~---~g~~~~g~~~~~~  164 (402)
T TIGR00897        88 WCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYS---IGIGVFGSYYSSY  164 (402)
T ss_pred             HHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence            6666543321  2 34677778899999999888777778888999999999999999887776   886 689999999


Q ss_pred             hhhccchHHHHHHHHHHHHHHHHh-heeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhh
Q 013568          288 MVDAYGVRFVFGVTALLPLITSGV-AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLW  366 (440)
Q Consensus       288 l~~~~gw~~~f~i~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~  366 (440)
                      +.+.+||+..+|....+..+..++ .++.++.+.+++.+ ++         ++.++..+..+.++++|.++...+..++.
T Consensus       165 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (402)
T TIGR00897       165 AIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ-TR---------EKFSELGKAATILFTNPNVLLGGMVRIIN  234 (402)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHhccCCCCCccccc-CC---------cchhhHHHHHHHHHcChhHHHHHHHHHHH
Confidence            988889776666544433333332 33344432211111 00         01112223455677899887665443332


Q ss_pred             hccccccce-eeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHH
Q 013568          367 QATPHSDSA-MFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFL  423 (440)
Q Consensus       367 ~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~  423 (440)
                      ......... .+++. +++|+++.+.+.+.....++.+++.++.+++.||+++|+.+.
T Consensus       235 ~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~  291 (402)
T TIGR00897       235 TIGLFGFAVFLPMFV-AELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR  291 (402)
T ss_pred             HHHHHHHHHHHHHHH-HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            221111111 12222 568999999888888889999999999999999999887653

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10054 putative transporter; Provisional

Probab=99.88  E-value=5.5e-21  Score=188.06  Aligned_cols=272  Identities=13%  Similarity=0.092  Sum_probs=195.0

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .++.+.+..++.... +...+.++.++++++|++..++|++.++..+...+ +++.|+++||   +|  ||+++.++.++
T Consensus         8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr---~g--~k~~~~~~~~~   82 (395)
T PRK10054          8 STSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK---FD--KKRYMLLAITA   82 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cC--cchhHHHHHHH
Confidence            566666777777666 67777899999888999999999999998888777 8999999999   45  67777777777


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc
Q 013568          212 GALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA  291 (440)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~  291 (440)
                      ..++.+.++ +.++++.+++++++.|.+.+...+...++..|..++++|++..++......   +|.++||.+++++.+ 
T Consensus        83 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---lg~~igp~l~~~l~~-  157 (395)
T PRK10054         83 FASGFIAIP-LVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLN---IGWTVGPPLGTLLVM-  157 (395)
T ss_pred             HHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-
Confidence            777766666 667777777788888887777778889999999999999988887776665   999999999998875 


Q ss_pred             cchHHHHHHHHHHHHHHHHh-heeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccc
Q 013568          292 YGVRFVFGVTALLPLITSGV-AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP  370 (440)
Q Consensus       292 ~gw~~~f~i~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~  370 (440)
                      .||+..|++.+++.++..+. .+++++++.++++++              ++ ..+.++.+++|.++...+..++.....
T Consensus       158 ~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~  222 (395)
T PRK10054        158 QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATET--------------GS-VWSPSVLLQDKALLWFTCSGFLASFVS  222 (395)
T ss_pred             hccCcHHHHHHHHHHHHHHHHHHHHhccccccccch--------------hh-hhhhhhhccCceehHHHHHHHHHHHHH
Confidence            79999999988777766543 344555432211100              01 122356778888877665544433211


Q ss_pred             ccc-ceeeeeee--ccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHH
Q 013568          371 HSD-SAMFYFTT--NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGT  430 (440)
Q Consensus       371 ~~~-~~~~~~~~--~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~  430 (440)
                      ... .....+..  ++.+.+....+.+.....+..+...+..+++.||+++|+.+..+.++..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~  285 (395)
T PRK10054        223 GAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFV  285 (395)
T ss_pred             HHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHH
Confidence            111 11111111  3456667777877777777777777888899999999988776654443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.88  E-value=2.1e-20  Score=183.76  Aligned_cols=275  Identities=21%  Similarity=0.265  Sum_probs=189.1

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHHHhhhhhhcccc--CcCCCCcchhhhHHHHH
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSL--PLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~g~l~Dr~--~~~G~~rr~~l~~~~~~  211 (440)
                      +..+...|+.+++. ++..+.+|.++++ .|+|.+++|++ ++..+++.++++++++.||+  ++.| +||.+++...++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~-~~~~l~~~~~~l~~p~~~~~~~~~~g-~r~~~i~~~~~~   79 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFL-PLVGLPWVVKFLWAPLVDNWWSWRLG-RRRSWVLPMQCL   79 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHH-HHHHHHHHHHHHHHHHHhccccccCC-cchhHHHHHHHH
Confidence            45678889999998 7888999999998 59999999986 44556666666666666664  3467 666665555443


Q ss_pred             HHHHHHHHHhh--hch-hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          212 GALSWSLMATI--VES-KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       212 ~~~~~~~~~~~--~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      ..++...++.+  ..+ ....+...++.++..+..++..+++..|..++++++...+....+..   +|.++|+...+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~---lG~~~g~~~~~~l  156 (390)
T TIGR02718        80 VSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVM---IGFFGGGAGTLVL  156 (390)
T ss_pred             HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            33332233311  112 22334455666777888888999999998888888877777766656   8999999999999


Q ss_pred             hhccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhc
Q 013568          289 VDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQA  368 (440)
Q Consensus       289 ~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~  368 (440)
                      .+++|||..|++.+++.++..+..++++|++.++++ ++             +...++.++.+|+|.++..++..+++..
T Consensus       157 ~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~-~~-------------~~~~~~~~~~l~~~~~~~~~~~~~l~~~  222 (390)
T TIGR02718       157 FGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPE-AP-------------LARRASLFRFFRRPLAWSLLALALLSAM  222 (390)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccc-cc-------------hhhHHHHHHHHcCcCHHHHHHHHHHHHH
Confidence            999999999999998887766655555443321110 00             1122346678889987776666555544


Q ss_pred             cccccceeeeeeeccCCCChhhHHHHHHHHHH-HHHHHHHHHHHhhccCCchhHHHHHHHHH
Q 013568          369 TPHSDSAMFYFTTNELGFTPEFLGRVKFVTSV-ASLLGVGLYNGFLKNVPLRKIFLANTIFG  429 (440)
Q Consensus       369 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i-~~~~g~~~~~~l~~r~g~r~~l~~~~~~~  429 (440)
                      .......+...+.++.|++++++|.+....++ ..+++.++.+++.||+|+|+.+..+.++.
T Consensus       223 ~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~  284 (390)
T TIGR02718       223 TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLA  284 (390)
T ss_pred             HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            22112222212224579999999998887764 67788999999999999999888765544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.87  E-value=1e-20  Score=186.33  Aligned_cols=256  Identities=13%  Similarity=0.098  Sum_probs=186.3

Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHH
Q 013568          138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS  215 (440)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~  215 (440)
                      ....+++..+. ......+|.+.++ +|+|..+.+++.+++.+++.+ ++++|+++||   +|  ||+.+..+.++..++
T Consensus        13 ~~~~~~~~~~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr---~g--rr~~~~~~~~~~~~~   86 (394)
T PRK11652         13 LVLLVAVGQMAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR---VG--RRPVILVGMSIFILG   86 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh---cC--ChHHHHHHHHHHHHH
Confidence            33333333333 4555556665555 899999999999999999988 8899999999   45  777888887777777


Q ss_pred             HHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchH
Q 013568          216 WSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVR  295 (440)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~  295 (440)
                      .+... ..++.+.+++.|++.|++.+...+....+..|.+++++++++.++.+.+..   +|..++|.+++.+.+..|||
T Consensus        87 ~~~~~-~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~i~~~l~~~~g~~  162 (394)
T PRK11652         87 TLVAL-FAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGIL---VSPLLAPLIGGLLTTLFGWR  162 (394)
T ss_pred             HHHHH-HHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccChH
Confidence            76666 678888899999999999988888888889999998888888888877776   89999999999999889999


Q ss_pred             HHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccc-ccc
Q 013568          296 FVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP-HSD  373 (440)
Q Consensus       296 ~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~-~~~  373 (440)
                      +.|++.+++.++..+ ..++.||++..+++               ..+..+..++.+++|.++...+..+...... ...
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (394)
T PRK11652        163 ACYLFLLLLGAGVTFSMARWMPETRPADAR---------------RTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFE  227 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccCccccc---------------hhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            999998876665544 34566765432110               0112344556778887765544333322110 011


Q ss_pred             ceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 013568          374 SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPL  418 (440)
Q Consensus       374 ~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~  418 (440)
                      .....+..+.+|+++.+.+++.....++.+++.++.+++.||.++
T Consensus       228 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~  272 (394)
T PRK11652        228 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  272 (394)
T ss_pred             HhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112223335589999999999888889999999999999999873

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.87  E-value=1.6e-20  Score=184.13  Aligned_cols=265  Identities=17%  Similarity=0.110  Sum_probs=182.2

Q ss_pred             HHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcc---hhhhHHHHHHHHHH
Q 013568          142 YFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRR---SYLVLSGLLGALSW  216 (440)
Q Consensus       142 ~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr---~~l~~~~~~~~~~~  216 (440)
                      ++...+. +...+.+|.++++ +|.|..++|++.+++.++..+ +|++|+++||+   | |++   +.+.+...   +..
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~---g-~~~~~~~~~~~~~~---~~~   84 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP---S-QLIPALRLLALLTL---LFA   84 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh---c-chHHHHHHHHHHHH---HHH
Confidence            5555554 6778888999977 799999999999999999888 89999999994   4 321   22222211   111


Q ss_pred             HHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHH
Q 013568          217 SLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRF  296 (440)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~  296 (440)
                      ..+....++.+.+++.|++.|++.+...+...++..++.  ++|++..+.......   +|..+||.+++++.+++|||.
T Consensus        85 ~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~~~~a~~~~~~~~~---lg~~igp~lgg~l~~~~g~~~  159 (382)
T PRK11128         85 VAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQIGLDYGKVRLWGS---IAFVIGSALTGKLVSWFGEQA  159 (382)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hhccCCcchHHHHHH---HHHHHHHHHHHHHHHHcChhH
Confidence            222224577888888999999998888888888888773  446666666665555   999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccccccce-
Q 013568          297 VFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSA-  375 (440)
Q Consensus       297 ~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~-  375 (440)
                      .|++.++..++..+..++.||++++.+++ +.           .++..++.++.+|+|.+|...+..++.......... 
T Consensus       160 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~  227 (382)
T PRK11128        160 ILWILTAGVASMLLGQLLRPTIMPQGESR-QQ-----------ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGF  227 (382)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCCCccccc-cc-----------cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHH
Confidence            99988765554444444445432211110 00           001123456778899888766555544332111111 


Q ss_pred             eeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 013568          376 MFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTAL  432 (440)
Q Consensus       376 ~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~  432 (440)
                      ...+. ++.|+++.+.|.+.....++.+++.++.+++.||+++|+.+..+.++.++.
T Consensus       228 ~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~  283 (382)
T PRK11128        228 SAIYW-QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVR  283 (382)
T ss_pred             HHHHH-HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            11222 468999999999999888899999999999999999999988776665543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.87  E-value=1.8e-20  Score=184.89  Aligned_cols=267  Identities=13%  Similarity=0.041  Sum_probs=181.0

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      ++..+.+..+...+. ++....++.++++++|.|..+.|++.+++.+++.+ +|+.|+++||   +|  ||+.+..+.++
T Consensus        16 ~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr---~g--~r~~l~~~~~~   90 (399)
T PRK05122         16 RIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT---LG--PKKAVVFGLCG   90 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc---cC--CcchHHHHHHH
Confidence            566777777777776 67788888888888999999999999999999988 8999999999   45  77778887766


Q ss_pred             HHHHHHHHHh--hhc-----hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHH
Q 013568          212 GALSWSLMAT--IVE-----SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYF  284 (440)
Q Consensus       212 ~~~~~~~~~~--~~~-----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i  284 (440)
                      ..++.+.++.  ..+     +...+++.|++.|++.+...+....++.|..++++|+++.++.+....   +|.++|+.+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~g~~~g~~l  167 (399)
T PRK05122         91 CALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATY---GALAIGAPL  167 (399)
T ss_pred             HHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhh---HHHHHHHHH
Confidence            6655443331  111     455788999999999999988889999999999999999998877776   899999999


Q ss_pred             HHHhhhccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHH
Q 013568          285 SGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF  364 (440)
Q Consensus       285 ~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  364 (440)
                      ++.+.+.+||++.+++.+++.++..+.....|+++.   .+++     +    .+.++..++   ..+...  ...++.+
T Consensus       168 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~----~~~~~~~~~---~~~~~~--~~~~~~~  230 (399)
T PRK05122        168 GVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPP---VKGE-----R----LPFRRVLGR---VWPYGM--GLALASI  230 (399)
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCcc-----c----hhHHHHHHH---HHHHHH--HHHHHHH
Confidence            999999999999998877665544333322222211   1000     0    011111111   111110  0111111


Q ss_pred             hhhccccccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          365 LWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      .+..   .......++ .+.|+  ...+......+++.+++.++.+++.||+++|+.+..+.++.++
T Consensus       231 ~~~~---~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~  291 (399)
T PRK05122        231 GFGT---IATFITLYY-AARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEIL  291 (399)
T ss_pred             HHHH---HHHHHHHHH-HHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            1111   001111111 23454  2445666778888899999999999999999888766554443

>TIGR00895 2A0115 benzoate transport

Probab=99.87  E-value=3.9e-21  Score=188.81  Aligned_cols=277  Identities=16%  Similarity=0.165  Sum_probs=184.6

Q ss_pred             HHHHHHHHHHhh-hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHH
Q 013568          138 VAMVYFVQGVLG-LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS  215 (440)
Q Consensus       138 ~~~~~~~~~~~~-~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~  215 (440)
                      ..+.++..++.. ......|. +.+++|.+..+.+++.++..++..+ .++.|+++||   +|  ||+.+..+.++..++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~g--~~~~~~~~~~~~~~~   95 (398)
T TIGR00895        22 SFLIMLMDGYDLAAMGFAAPA-ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR---IG--RKRVLLWSILLFSVF   95 (398)
T ss_pred             HHHHHHHHHHHHHHHHhhHHH-HhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH---hh--hHHHHHHHHHHHHHH
Confidence            334445555543 33434444 4555899999999999999998888 7899999999   45  777888887777777


Q ss_pred             HHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchH
Q 013568          216 WSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVR  295 (440)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~  295 (440)
                      .+++. ..++.+.+++.+++.|++.+...+...+++.|++|+++|+++.++......   +|..+++.+++++.+..||+
T Consensus        96 ~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~g~~~~~~~~~~l~~~~g~~  171 (398)
T TIGR00895        96 TLLCA-LATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYP---IGAAVGGFLAGWLIPVFGWR  171 (398)
T ss_pred             HHHHH-HccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHH---HHHHHHHHHHHHHhhcccce
Confidence            76666 677888889999999999999999999999999999999999999888777   99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-hheeeccccccCCCcCC---------------CCCCCCCccchhhHHHHHHHHHHh-cC---cc
Q 013568          296 FVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQ---------------NLPLGDPSFFESSKQNMFQLWEAV-KQ---PN  355 (440)
Q Consensus       296 ~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l-~~---~~  355 (440)
                      +.|++.+++.++..+ ..+++||++.....+++               .+........+...+..++..+.+ ++   +.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (398)
T TIGR00895       172 SLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARI  251 (398)
T ss_pred             eehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHH
Confidence            999988755554444 45566765421100000               000000000000011112222222 22   22


Q ss_pred             hhhhHHHHHhhhccccccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHH
Q 013568          356 VFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLA  424 (440)
Q Consensus       356 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~  424 (440)
                      .+...+..++..........+..++.+++|+++.+.+.......++.+++.++.+++.||+++|+.+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  320 (398)
T TIGR00895       252 TVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALL  320 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            222221112211111111111112335789999999999999999999999999999999998855443

>PRK12382 putative transporter; Provisional

Probab=99.87  E-value=3.9e-20  Score=182.01  Aligned_cols=268  Identities=13%  Similarity=0.061  Sum_probs=177.2

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .++.+.+..+...+. +...+.+|.++++++|+|..++|++.+++.+++.+ +|++|+++||   +|  ||+.++.+.+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr---~g--~r~~l~~~~~~   90 (392)
T PRK12382         16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ---YG--AKRSALQGMLA   90 (392)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh---hc--chHHHHHHHHH
Confidence            555555555555555 67777888888878999999999999999999988 8999999999   45  67777776665


Q ss_pred             HHHHHHHH---Hh----hhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHH
Q 013568          212 GALSWSLM---AT----IVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYF  284 (440)
Q Consensus       212 ~~~~~~~~---~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i  284 (440)
                      ..++.+..   +.    ...+++.++++|++.|++.+...+...+++.|+.|+++|+++.++.+.+..   +|..+||.+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~---~g~~~g~~~  167 (392)
T PRK12382         91 CGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMY---GALAAGAPL  167 (392)
T ss_pred             HHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHH---HHHHHHHHH
Confidence            55443221   11    124667889999999999998888888999999999999999999887777   899999999


Q ss_pred             HHHhhhccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHH
Q 013568          285 SGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF  364 (440)
Q Consensus       285 ~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  364 (440)
                      ++++.+.+||++.+.+..+..++.++.....||.+.+   +++     +    ++.++    ..+.+..+.+... ++.+
T Consensus       168 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~----~~~~~----~~~~~~~~~~~~~-l~~~  230 (392)
T PRK12382        168 GLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPAH---AGE-----R----PSLWS----VVGLIWKPGLGLA-LQGV  230 (392)
T ss_pred             HHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCCCC---ccc-----C----chHHH----HHHHHHHhHHHHH-HHHH
Confidence            9999998999998876655444333322222332111   000     0    01111    1111222222111 1111


Q ss_pred             hhhccccccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 013568          365 LWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTAL  432 (440)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~  432 (440)
                      .+..   .......++ ++.|++  ..+......+++.+++.++.+++.||+|+|+.+..+..+.++.
T Consensus       231 ~~~~---~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~  292 (392)
T PRK12382        231 GFAV---IGTFVSLYF-ASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVG  292 (392)
T ss_pred             HHhH---HHHHHHHHH-HhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHH
Confidence            1111   011111111 234554  3456666677888899999999999999998887766554443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.87  E-value=1.5e-20  Score=184.30  Aligned_cols=268  Identities=13%  Similarity=0.098  Sum_probs=185.6

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .++.+++..+...+. +.....+|.+.++ +|+|..++|++.+.+.+++.+ ++++|+++||   +|  ||+.+..+.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr---~g--~k~~~~~~~~~   80 (381)
T PRK03633          7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR---IG--FNRSYYLASLI   80 (381)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HH--HHHHHHHHHHH
Confidence            466677777777776 6777788888876 799999999999999999988 8899999999   45  77788888888


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc
Q 013568          212 GALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA  291 (440)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~  291 (440)
                      ..++..+++ ..++++.++++|++.|++.+...+...+.+.+..++++|+++.+.+..+..   +|..+|+.+++.+.+.
T Consensus        81 ~~~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~l~~~  156 (381)
T PRK03633         81 FAAGCAGLG-LMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYY---LGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---HHHHHHHHHHhccccc
Confidence            887777766 678889999999999999998888888888899999999999888887777   9999999999988765


Q ss_pred             cchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccc
Q 013568          292 YGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH  371 (440)
Q Consensus       292 ~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~  371 (440)
                      ..|...+ ..+........+ ++.+.+++..+ +++           .     ++.++.+++|..+......+.......
T Consensus       157 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~-~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (381)
T PRK03633        157 LMSVLPW-VTGLVLAAILPL-LFTRILNQQAE-NHD-----------S-----TSIWPMLKLRQARLGVNGCIISGIVLG  217 (381)
T ss_pred             ccchHHH-HHHHHHHHHHHH-HHhcccCCCCC-CCC-----------C-----CCHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            4333222 222222111111 11122111111 000           0     112345667765544322222211100


Q ss_pred             -ccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          372 -SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       372 -~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                       .......+. ++.|.++..+|.......++.+++.+..+++.||+++|+.+..+..+..+
T Consensus       218 ~~~~~lp~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~  277 (381)
T PRK03633        218 SLYGLMPLYL-NHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVIL  277 (381)
T ss_pred             HHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHH
Confidence             111112222 45689999999988888899999999999999999999888765544443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.87  E-value=3.7e-20  Score=182.21  Aligned_cols=271  Identities=16%  Similarity=0.179  Sum_probs=174.6

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhh-hHHHHhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSL-PWLIKPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l-~~~~~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      +.+.+.+.+..+..++. ....+.++.++++++|+|.+++|++.+...+ ++.++++.|.++||   +| +||.++..+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr---~g-~r~~~~~~~~   89 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDK---RG-DRKSLIVFCC   89 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cc-chhHHHHHHH
Confidence            44667777778888887 6778889999998899999999998766544 56666666555999   56 5666566665


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccc--cchhhhHHhhhhhhhHHHHHHHHHHH
Q 013568          210 LLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQS--VSGSLQSLCWGSSAFGGIVSSYFSGS  287 (440)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~~~~g~~ig~~i~g~  287 (440)
                      ++..+...+.+ ++++++.+++.+.+.+...+...+...++..|..++++|.  ..+++.+.+..   +|.++||.++++
T Consensus        90 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---lg~~~g~~i~~~  165 (393)
T PRK15011         90 LLGVLACTLFA-WNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVS---LAWVIGPPLAYA  165 (393)
T ss_pred             HHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH---HHHHHhhHHHHH
Confidence            55555555555 5677776655554444444566777788888877665442  12234444444   999999999999


Q ss_pred             hhhccchHHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcc-hhhhH-HHHH
Q 013568          288 MVDAYGVRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPN-VFLPT-LFVF  364 (440)
Q Consensus       288 l~~~~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~-l~~~  364 (440)
                      +.+++|||+.|++.++..++..+ ..+++||.+..++..+++ .       +.       .   .++++ .+... +...
T Consensus       166 l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~-------~---~~~~~~~~~~~~~~~~  227 (393)
T PRK15011        166 LAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATGT-L-------EA-------P---RRNRRDTLLLFVICTL  227 (393)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccccc-c-------cc-------c---ccccccHHHHHHHHHH
Confidence            99999999999998877766655 445677764322111000 0       00       0   01211 12211 1111


Q ss_pred             hhhccccccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHH
Q 013568          365 LWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIF  428 (440)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~  428 (440)
                      .+..........+.+..+.+|+++.+.+.+.....++.+++.++.+++.||+++|+.+..+.+.
T Consensus       228 ~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~  291 (393)
T PRK15011        228 MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVA  291 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            1111000111223334456899998999888777778888999999999999999887765443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.86  E-value=2.7e-20  Score=188.86  Aligned_cols=285  Identities=14%  Similarity=0.181  Sum_probs=190.1

Q ss_pred             HHHHHHHHHHHHHhh-hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568          135 NFAVAMVYFVQGVLG-LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG  212 (440)
Q Consensus       135 ~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~  212 (440)
                      +..+++.++...+.. .....++ .+.+++|++..+.+++.+.+.+++.+ +++.|+++||   +|  ||+.++.+.++.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr---~g--~r~~~~~~~~~~   95 (496)
T PRK03893         22 FSAAWLGYLLDGFDFVLITLVLT-EVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR---YG--RRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--cHHHHHHHHHHH
Confidence            445666777777764 4444444 45566899999999999999999888 7889999999   45  777788887777


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhcc
Q 013568          213 ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY  292 (440)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~  292 (440)
                      +++.++++ +.++.+.+++.|++.|++.+...+....++.|.+++++|+++.++......   +|..+++.+++++.+.+
T Consensus        96 ~~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~g~~~~~~~~~~l~~~~  171 (496)
T PRK03893         96 SVGTLACG-FAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFS---IGAVVAAQVYSLVVPVW  171 (496)
T ss_pred             HHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccC
Confidence            77777777 678888999999999999999999999999999999999998888887777   99999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchh----hHHHHHH---------HHHHhc-------
Q 013568          293 GVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFES----SKQNMFQ---------LWEAVK-------  352 (440)
Q Consensus       293 gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---------~~~~l~-------  352 (440)
                      |||+.|++.++..++.++....+||++..++.+++....  ++..+.    .+.....         ....+.       
T Consensus       172 ~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (496)
T PRK03893        172 GWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPV--RTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAA  249 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccc--hhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            999999876554443333344556543321111111000  000000    0000000         000000       


Q ss_pred             --------------------C-cc--hhhhHHHHHhhhcccc-cc-ceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHH
Q 013568          353 --------------------Q-PN--VFLPTLFVFLWQATPH-SD-SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVG  407 (440)
Q Consensus       353 --------------------~-~~--~~~~~l~~~~~~~~~~-~~-~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~  407 (440)
                                          . ++  ....+....+...... .. .....+..+++|+++.+++.+.....++.+++.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~  329 (496)
T PRK03893        250 IVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCC  329 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence                                0 00  0000000000001000 00 1112333357899999999999999999999999


Q ss_pred             HHHHhhccCCchhHHHHHHHHHHH
Q 013568          408 LYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       408 ~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      +.+++.||+++|+.+..+.++..+
T Consensus       330 ~~g~l~dr~g~~~~~~~~~~~~~~  353 (496)
T PRK03893        330 VGGFLGDWLGTRKAYVCSLLISQL  353 (496)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHH
Confidence            999999999999888776554443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.86  E-value=1.1e-20  Score=189.46  Aligned_cols=256  Identities=12%  Similarity=0.006  Sum_probs=172.7

Q ss_pred             HHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhh---hchhHHHHH
Q 013568          156 NFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI---VESKYSAAL  231 (440)
Q Consensus       156 ~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~  231 (440)
                      .+++.++ |++..+.+++.+.+.+++.+ ++++|+++||   +|  ||+++..+.++.+++.+.++..   ..+...+++
T Consensus        52 ~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr---~g--~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  125 (452)
T PRK11273         52 MPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR---SN--PRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV  125 (452)
T ss_pred             hHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc---cC--CchhHHHHHHHHHHHHHHHHhhhcccccHHHHHH
Confidence            3456776 99999999999999999988 8999999999   45  6778888877777776666522   135667788


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHH-HHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 013568          232 SILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGG-IVSSYFSGSMVDAYGVRFVFGVTALLPLITSG  310 (440)
Q Consensus       232 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~-~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~  310 (440)
                      .|++.|++.+...+.....+.|++|+++|+++.++++.+..   +|. +++++++..+....|||+.|++.+++.++..+
T Consensus       126 ~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~  202 (452)
T PRK11273        126 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHN---VGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVAL  202 (452)
T ss_pred             HHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            89999999998878788889999999999999998877666   775 44555444443345999999998877666544


Q ss_pred             -hheeeccccccCCCcCC----CCCCCCCccchhhHHHHHH--HHHHhcCcchhhhHHHHHhhhccc-cccceeeeeeec
Q 013568          311 -VAVLVKEQQVLGPSRRQ----NLPLGDPSFFESSKQNMFQ--LWEAVKQPNVFLPTLFVFLWQATP-HSDSAMFYFTTN  382 (440)
Q Consensus       311 -~~~~~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~  382 (440)
                       ..+++||+++.....+.    .+........+..+...++  ....++++.+|...+..++..... ......+.++.+
T Consensus       203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~  282 (452)
T PRK11273        203 FAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKE  282 (452)
T ss_pred             HHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             45567776543111000    0000000000000001112  123568888887665554433211 112222344445


Q ss_pred             cCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccC--Cchh
Q 013568          383 ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNV--PLRK  420 (440)
Q Consensus       383 ~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~--g~r~  420 (440)
                      ..|++..+.+.+..+..++.+++.++.|++.||+  ++|.
T Consensus       283 ~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~  322 (452)
T PRK11273        283 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  322 (452)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence            6789988999888888999999999999999998  4443

>PRK09952 shikimate transporter; Provisional

Probab=99.86  E-value=2.1e-20  Score=186.52  Aligned_cols=277  Identities=15%  Similarity=0.198  Sum_probs=176.4

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhc--CCChhhhHHHHH--hhhhhH---HH-HhhhhhhccccCcCCCCcchhh
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDL--HLDPAETAVISG--FSSLPW---LI-KPLYGFISDSLPLFGYRRRSYL  205 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~--g~s~~~~g~~~s--~~~l~~---~~-~~~~g~l~Dr~~~~G~~rr~~l  205 (440)
                      ++...+.++..+++ .......+.++.+++  +.++. .+++.+  .+.+++   .+ +++.|+++||   +|  ||+.+
T Consensus        24 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr---~G--rr~~l   97 (438)
T PRK09952         24 ALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDR---LG--RKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh---hc--cHHHH
Confidence            34455566677776 344444555566555  67766 455432  223333   33 5677999999   45  78888


Q ss_pred             hHHHHHHHHHHHHHHhhhchhH--------HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhH
Q 013568          206 VLSGLLGALSWSLMATIVESKY--------SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFG  277 (440)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g  277 (440)
                      +++.++..++.++++ +++++.        .++++|+++|++.+...+....++.|++|+++|++..+....+..   +|
T Consensus        98 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~---~G  173 (438)
T PRK09952         98 MLTVWMMGIATALIG-LLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYG---VG  173 (438)
T ss_pred             HHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHH---HH
Confidence            888888888888887 677765        478899999999999988889999999999999988887777766   88


Q ss_pred             HHHHHHHHHHhh--------hccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHH
Q 013568          278 GIVSSYFSGSMV--------DAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWE  349 (440)
Q Consensus       278 ~~ig~~i~g~l~--------~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (440)
                      .+++..+..++.        ..+|||++|++.++..++...+....||++...+.+.+.++ .+    +.    ......
T Consensus       174 ~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~-~~----~~----~~~~~~  244 (438)
T PRK09952        174 LLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA-AK----KR----IPVIEA  244 (438)
T ss_pred             HHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc-cc----cc----CCHHHH
Confidence            888877766654        25799999998877665544344456665432111101000 00    00    001112


Q ss_pred             HhcCcchhhhHHH-HHhhhcc-ccccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHH
Q 013568          350 AVKQPNVFLPTLF-VFLWQAT-PHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTI  427 (440)
Q Consensus       350 ~l~~~~~~~~~l~-~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~  427 (440)
                      .+++|+.+...+. .++.... .........+..+.+|++......+....++..+++.++.+++.||+|+|+.+..+.+
T Consensus       245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~  324 (438)
T PRK09952        245 LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGAL  324 (438)
T ss_pred             HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            4456665554321 1111111 0011112233345678888766555556677778888999999999999998877655


Q ss_pred             HHH
Q 013568          428 FGT  430 (440)
Q Consensus       428 ~~~  430 (440)
                      +.+
T Consensus       325 ~~~  327 (438)
T PRK09952        325 IGT  327 (438)
T ss_pred             HHH
Confidence            433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.86  E-value=4.2e-20  Score=191.79  Aligned_cols=172  Identities=16%  Similarity=0.190  Sum_probs=137.8

Q ss_pred             HHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHH
Q 013568          140 MVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWS  217 (440)
Q Consensus       140 ~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~  217 (440)
                      +.++..++. ......+|. +.+++|++..+.+++.+++.+++++ .+++|+++||   +|  ||+.++++.++.+++.+
T Consensus       174 l~~~~~g~d~~~is~ilp~-i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR---~G--RR~~lii~lil~~i~~l  247 (742)
T TIGR01299       174 LALMADGVEVFVVGFVLPS-AEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK---LG--RKQCLLICLSVNGFFAF  247 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--cHHHHHHHHHHHHHHHH
Confidence            333444444 234444444 4455899999999999999999988 7889999999   46  77778888777777777


Q ss_pred             HHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc------
Q 013568          218 LMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA------  291 (440)
Q Consensus       218 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~------  291 (440)
                      +.+ ++++++.++++|++.|++.+...+...+++.|++|++.|++..++...++.   +|.++++.++..+...      
T Consensus       248 l~a-fa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~---iG~ila~~la~~il~~~G~~~~  323 (742)
T TIGR01299       248 FSS-FVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWM---IGGIYAAAMAWAIIPHYGWSFQ  323 (742)
T ss_pred             HHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccchhc
Confidence            666 678889999999999999999999999999999999999999888887777   8999998887766543      


Q ss_pred             -------cchHHHHHHHHHHHHHHHHhheeecccccc
Q 013568          292 -------YGVRFVFGVTALLPLITSGVAVLVKEQQVL  321 (440)
Q Consensus       292 -------~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~  321 (440)
                             .+||+.|++.++..++.++..+++||+|+.
T Consensus       324 ~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrw  360 (742)
T TIGR01299       324 MGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF  360 (742)
T ss_pred             cccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence                   368999998888777776677789998754

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.86  E-value=2.2e-20  Score=186.50  Aligned_cols=273  Identities=12%  Similarity=0.011  Sum_probs=182.4

Q ss_pred             HHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHH
Q 013568          136 FAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA  213 (440)
Q Consensus       136 ~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~  213 (440)
                      +.+.+.+...... ...... .+++++ +|++.++.+++.+++.+++.+ +++.|+++||   +|  ||+.+..+.++..
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~-~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr---~g--~~~~~~~~~~~~~  102 (438)
T TIGR00712        30 LGIFFGYAAYYLVRKNFALA-MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR---SN--PRVFLPAGLILSA  102 (438)
T ss_pred             HHHHHHHHHHHHHhccHHhh-hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc---cC--CceehHHHHHHHH
Confidence            3344444444443 233333 446666 599999999999999999888 7889999999   45  6667777777777


Q ss_pred             HHHHHHHhh---hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh
Q 013568          214 LSWSLMATI---VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD  290 (440)
Q Consensus       214 ~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~  290 (440)
                      ++.++++..   .++...+.+.|++.|++.+...+.....+.|++|+++|+++.++++....   +|..+++.+.+.+.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~---~g~~~~~~l~~~~~~  179 (438)
T TIGR00712       103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHN---IGGGIPPLLVLLGMA  179 (438)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHH---hHhHHHHHHHHHHHH
Confidence            776655522   24556677889999999998888888999999999999999999887777   899988887776444


Q ss_pred             -ccchHHHHHHHHHHHHHHHH-hheeeccccccCCCcC----CCCCCCCCccchhhHHHHHHH--HHHhcCcchhhhHHH
Q 013568          291 -AYGVRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRR----QNLPLGDPSFFESSKQNMFQL--WEAVKQPNVFLPTLF  362 (440)
Q Consensus       291 -~~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~l~  362 (440)
                       ..|||+.|++.+++.++..+ ..+++||++.....++    +.+..++....++.+...++.  ...++++.+|...+.
T Consensus       180 ~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (438)
T TIGR00712       180 WFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIA  259 (438)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHH
Confidence             56899999998888776554 4556777654211000    000000000000000011111  235788888877655


Q ss_pred             HHhhhccc-cccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 013568          363 VFLWQATP-HSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPL  418 (440)
Q Consensus       363 ~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~  418 (440)
                      .++..... ......+.+..+..|+++.+.++...+..++.+++.++++++.||+++
T Consensus       260 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~  316 (438)
T TIGR00712       260 NVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFK  316 (438)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44433211 111222233335679999999999999999999999999999999854

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.86  E-value=4.2e-22  Score=188.57  Aligned_cols=267  Identities=15%  Similarity=0.103  Sum_probs=194.5

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG  212 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~  212 (440)
                      ...+++..+++... +.+.. .-+-.++++|+++...|++.+.+.+.+.+ .|+.|+++||     |+||.++.++..+.
T Consensus        35 l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-----yNR~~v~~vG~~iW  108 (493)
T KOG1330|consen   35 LVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-----YNRKRVIAVGIFIW  108 (493)
T ss_pred             HHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-----cCcceEEeeHHHHH
Confidence            44555666666666 44443 33446677999999999999999999988 9999999999     47999999999999


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhcc
Q 013568          213 ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY  292 (440)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~  292 (440)
                      .++.++.+ +...+++++++|.+.|+|.+...++.+.+++|.++.++|++..++++++..   +|..+|-++++.+.+..
T Consensus       109 ~~Av~~~~-fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ip---vGsglG~vvgs~va~~~  184 (493)
T KOG1330|consen  109 TLAVFASG-FSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIP---VGSGLGYVVGSVVASLT  184 (493)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcc---cccceeEEeeeeeccCc
Confidence            99988888 679999999999999999999999999999999999999998888887776   99999998888888776


Q ss_pred             c-hHHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccc
Q 013568          293 G-VRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP  370 (440)
Q Consensus       293 g-w~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~  370 (440)
                      + |||.|+..+++.++..+ +.++++|+++....+.+.+..    ........+++++.+.+++.+....+-...+++..
T Consensus       185 ~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~----~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~  260 (493)
T KOG1330|consen  185 FWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENK----MVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVI  260 (493)
T ss_pred             cceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCc----CCCCccchHHHHHHHHccCceeeehHHHHHHHHhc
Confidence            6 99999999999988777 455777776532222111100    01233456778888888776555444444444422


Q ss_pred             ccccee----eeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013568          371 HSDSAM----FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKN  415 (440)
Q Consensus       371 ~~~~~~----~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r  415 (440)
                      ++...+    .++..+-.|++.....++..+..+++.+|.+++|.+.||
T Consensus       261 Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~  309 (493)
T KOG1330|consen  261 GSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDK  309 (493)
T ss_pred             cccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHH
Confidence            111111    121123345555555555566666777777777777776

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.86  E-value=4.2e-21  Score=198.37  Aligned_cols=283  Identities=12%  Similarity=0.046  Sum_probs=198.5

Q ss_pred             HHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHH
Q 013568          139 AMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSW  216 (440)
Q Consensus       139 ~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~  216 (440)
                      ++.++.+.+. +.....++. ++++|+++..+.|++.+.+.+++++ .++.|++.||   .  +||+++.++.++++++.
T Consensus        39 ~~~~~~~~~~~g~~~~~l~~-iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r---~--~r~~~i~~g~ll~~lg~  112 (633)
T TIGR00805        39 TCAQLQGLLYNGLVNSSLTT-IERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK---L--HRPIVIGIGCAIMGLGS  112 (633)
T ss_pred             HHHHHHHHHHHHHHHhhchh-hhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc---c--CcceEEEecHHHHHHHH
Confidence            3344555554 455555554 4555999999999999999999988 7889999999   3  48888888888888888


Q ss_pred             HHHHhhhc---------------------------------------------------hhHHHHHHHHHHHHHHHhhhh
Q 013568          217 SLMATIVE---------------------------------------------------SKYSAALSILLGSLSVAFSDV  245 (440)
Q Consensus       217 ~~~~~~~~---------------------------------------------------~~~~~~~~~~l~g~~~~~~~~  245 (440)
                      ++.+ +++                                                   .+..++++|++.|+|.+...+
T Consensus       113 ll~a-lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~  191 (633)
T TIGR00805       113 FLLS-LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFP  191 (633)
T ss_pred             HHHh-ChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchh
Confidence            7776 331                                                   134567899999999999999


Q ss_pred             hhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhcc----------------------chHHHHHHHHH
Q 013568          246 VVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY----------------------GVRFVFGVTAL  303 (440)
Q Consensus       246 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~----------------------gw~~~f~i~~~  303 (440)
                      ...+++.|++|+++|+.+.+++..+..   +|.++|+++++++.+.+                      +|+..|++.++
T Consensus       192 ~~~~~i~d~~~~~~~~~~~~i~~~~~~---iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~  268 (633)
T TIGR00805       192 LGISYIDDFAKSKNSPLYIGILESIAV---FGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGG  268 (633)
T ss_pred             cCchhhhccCCccccHHHHHHHHHHHH---hhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHH
Confidence            999999999999999999999888777   99999999999887532                      27778988888


Q ss_pred             HHHHHHHhheeeccccccCCC-cC-CCC--CC----CC---CccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccc-c
Q 013568          304 LPLITSGVAVLVKEQQVLGPS-RR-QNL--PL----GD---PSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP-H  371 (440)
Q Consensus       304 ~~~~~~~~~~~~~e~~~~~~~-~~-~~~--~~----~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~-~  371 (440)
                      +.++..+.++++|++.+.... .+ +..  +.    ..   ....+..++..+..+++++||.++...+..++..... .
T Consensus       269 l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~  348 (633)
T TIGR00805       269 VALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNG  348 (633)
T ss_pred             HHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            877766655566654321111 00 000  00    00   0000112233455778899998887766555543321 1


Q ss_pred             ccceeeeeeeccCCCChhhHHHHHHHHHH-HHHHHHHHHHHhhccCC--chhHHHHHHHHHHH
Q 013568          372 SDSAMFYFTTNELGFTPEFLGRVKFVTSV-ASLLGVGLYNGFLKNVP--LRKIFLANTIFGTA  431 (440)
Q Consensus       372 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~i-~~~~g~~~~~~l~~r~g--~r~~l~~~~~~~~~  431 (440)
                      .....+.|+.+.+|+++.+++++.....+ +.++|.+++|++.||++  .|+++..+.++..+
T Consensus       349 ~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~  411 (633)
T TIGR00805       349 YITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTL  411 (633)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHH
Confidence            22223344456799999999999887666 67899999999999988  44555555444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.86  E-value=5.1e-20  Score=181.98  Aligned_cols=272  Identities=18%  Similarity=0.230  Sum_probs=186.0

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhh-----hHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhh
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAE-----TAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLV  206 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~-----~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~  206 (440)
                      .+..+++..++.++. +.....+|.+.++ +|++..+     .|++.++..++..+ +|++|+++||   +|  ||+.+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr---~g--~r~~~~   88 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR---KG--RKIMLL   88 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hC--cHHHHH
Confidence            344555666666666 5677778888876 7998654     47888888888877 8999999999   45  677777


Q ss_pred             HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHH
Q 013568          207 LSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG  286 (440)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g  286 (440)
                      .+.++..++.+++. ..++.+.+++.|++.|++.+. .+....++.|..++++|+++.++......   +|.+++|.+++
T Consensus        89 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~  163 (408)
T PRK09874         89 RSALGMGIVMVLMG-LAQNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGV---SGALLGPLAGG  163 (408)
T ss_pred             HHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHH---HHHHHHHHHHH
Confidence            77777777766666 567888889999999988654 46677888999999999999888877766   99999999999


Q ss_pred             HhhhccchHHHHHHHHHHHHHHHHh-heeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHH-HHH
Q 013568          287 SMVDAYGVRFVFGVTALLPLITSGV-AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTL-FVF  364 (440)
Q Consensus       287 ~l~~~~gw~~~f~i~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l-~~~  364 (440)
                      .+.+.+||++.|++.+++.++..+. .++++|++.+.+++              .+...++..+.+++|+.+...+ ..+
T Consensus       164 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (408)
T PRK09874        164 LLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK--------------EMLHMREVVTSLKNPKLVLSLFVTTL  229 (408)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch--------------hhhHHHHHHHhCcCCchHHHHHHHHH
Confidence            9999899999999988877666553 44556543221110              0112234456677777654332 222


Q ss_pred             hhhccccc-cceeeeeeeccCCCChh----hHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          365 LWQATPHS-DSAMFYFTTNELGFTPE----FLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       365 ~~~~~~~~-~~~~~~~~~~~~g~s~~----~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      .+...... ...+..+..+..+ +..    ..+.+..+.+++.+++.+..+++.||+++|+.+..+.++..+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~  300 (408)
T PRK09874        230 IIQVATGSIAPILTLYVRELAG-NVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVL  300 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence            22221111 1111222222222 222    235555667788888899999999999999988877655443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.86  E-value=1.1e-20  Score=190.06  Aligned_cols=281  Identities=15%  Similarity=0.066  Sum_probs=182.2

Q ss_pred             HHHHHh-hhHHHHHHHHHHHhcCCC--------hhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568          143 FVQGVL-GLARLAVNFYLKDDLHLD--------PAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG  212 (440)
Q Consensus       143 ~~~~~~-~~~~~~l~~~l~~~~g~s--------~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~  212 (440)
                      +..++. ......++....+ ++.+        ..+.+++.+++.++..+ ++++|+++||   +|  ||++++++.++.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~---~g--rr~~~~~~~~~~  111 (481)
T TIGR00879        38 LMFGYDTGVIGGALALPAFE-FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR---FG--RKKSLLIIALLF  111 (481)
T ss_pred             HhcccccchhhhhhhcHHHH-HhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhh---hh--hHHHHHHHHHHH
Confidence            344444 3444444444333 5665        88999999999999988 8899999999   45  777888887777


Q ss_pred             HHHHHHHHhhh--chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHH---HH
Q 013568          213 ALSWSLMATIV--ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS---GS  287 (440)
Q Consensus       213 ~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~---g~  287 (440)
                      .++.++.....  .+.+.+++.|++.|++.+...+...+++.|++++++|+++.++.+.+..   +|.++++.++   +.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~---~G~~~~~~~~~~~~~  188 (481)
T TIGR00879       112 VIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAIT---FGILVAYGFGSGKVS  188 (481)
T ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHH---HHHHHHHHHHHHhhc
Confidence            77766664222  2344788999999999999999999999999999999999999887777   9999999998   66


Q ss_pred             hhhccchHHHHHHHHHHHHHHHHhheeeccccccC---CCcCCCC------CCCCCccchhhH-----------------
Q 013568          288 MVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLG---PSRRQNL------PLGDPSFFESSK-----------------  341 (440)
Q Consensus       288 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~------~~~~~~~~~~~~-----------------  341 (440)
                      +.+..|||+.|++.++..++..+..+++||++...   +..++..      ...+....+..+                 
T Consensus       189 ~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (481)
T TIGR00879       189 LNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQ  268 (481)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhcc
Confidence            66778999999997776666666667778765311   0000000      000000000000                 


Q ss_pred             HHHHHHHHHhcC--cc-hhhhHHHHHhhhccccccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 013568          342 QNMFQLWEAVKQ--PN-VFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPL  418 (440)
Q Consensus       342 ~~~~~~~~~l~~--~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~  418 (440)
                      ..+++.++..++  +. ++..++..+...........+..+..++.|++....+....+..++.+++.++.+++.||+++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  348 (481)
T TIGR00879       269 PSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGR  348 (481)
T ss_pred             ccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            000112221121  11 111122222221111111111111225679988888888889999999999999999999999


Q ss_pred             hhHHHHHHHHHHHH
Q 013568          419 RKIFLANTIFGTAL  432 (440)
Q Consensus       419 r~~l~~~~~~~~~~  432 (440)
                      |+.+..+.++.++.
T Consensus       349 ~~~~~~~~~~~~~~  362 (481)
T TIGR00879       349 RPLLLIGAAGMAIC  362 (481)
T ss_pred             hHHHHHHHHHHHHH
Confidence            99888765554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.86  E-value=1.1e-20  Score=190.95  Aligned_cols=287  Identities=14%  Similarity=0.107  Sum_probs=184.2

Q ss_pred             HHHHHHHHHHHh-hhHHHHHHHHHHHhc--------CCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhh
Q 013568          137 AVAMVYFVQGVL-GLARLAVNFYLKDDL--------HLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLV  206 (440)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~--------g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~  206 (440)
                      ...++.+..++. ..+....+. +++++        |.+..+.+++.+++.++..+ ++++|+++||   +|  ||+.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr---~G--rr~~~~   89 (479)
T PRK10077         16 VATLGGLLFGYDTAVISGTVES-LNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR---FG--RRDSLK   89 (479)
T ss_pred             HHHHHHHhcCcccceehHhHHH-HHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--cHHHHH
Confidence            344445555555 344444443 33334        88999999999999999988 7899999999   45  777888


Q ss_pred             HHHHHHHHHHHHHHhh-----------hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhh
Q 013568          207 LSGLLGALSWSLMATI-----------VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSA  275 (440)
Q Consensus       207 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  275 (440)
                      ++.++..++.+..+..           ......++++|+++|++.+...+...++++|++|+++|++++++.+.+..   
T Consensus        90 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~---  166 (479)
T PRK10077         90 IAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII---  166 (479)
T ss_pred             HHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH---
Confidence            8877777776655521           12245678999999999999999999999999999999999999887777   


Q ss_pred             hHHHHHHHHHHHhh--------hccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCC----CCCCccchhhHHH
Q 013568          276 FGGIVSSYFSGSMV--------DAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLP----LGDPSFFESSKQN  343 (440)
Q Consensus       276 ~g~~ig~~i~g~l~--------~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~~~  343 (440)
                      +|.++++.+++.+.        +.+|||+.|++.+++.++..+..+++||+++....+.+.++    .++....+..+..
T Consensus       167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  246 (479)
T PRK10077        167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA  246 (479)
T ss_pred             HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHH
Confidence            88888887766543        35799999999888777766667788887643111100000    0000000000111


Q ss_pred             HHHHHHHhc-----Ccchhhh----HHHH---Hhhhccccccceeeeee---eccCCCChhhHHHHHHHHHHHHHHHHHH
Q 013568          344 MFQLWEAVK-----QPNVFLP----TLFV---FLWQATPHSDSAMFYFT---TNELGFTPEFLGRVKFVTSVASLLGVGL  408 (440)
Q Consensus       344 ~~~~~~~l~-----~~~~~~~----~l~~---~~~~~~~~~~~~~~~~~---~~~~g~s~~~~g~~~~~~~i~~~~g~~~  408 (440)
                      .++.++.++     .+..+..    +...   ..+.... ......++.   .+..|++....++.....+++.+++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~  325 (479)
T PRK10077        247 LQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFV-GINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVL  325 (479)
T ss_pred             HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHh-ChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHH
Confidence            111212111     1111111    0100   0111100 111111111   1457888777777777888889999999


Q ss_pred             HHHhhccCCchhHHHHHHHHHHHHh
Q 013568          409 YNGFLKNVPLRKIFLANTIFGTALG  433 (440)
Q Consensus       409 ~~~l~~r~g~r~~l~~~~~~~~~~~  433 (440)
                      .+++.||+|+|++++.+.++.++..
T Consensus       326 ~g~l~dr~g~r~~~i~~~~~~~v~~  350 (479)
T PRK10077        326 AIMTVDKFGRKPLQIIGALGMAIGM  350 (479)
T ss_pred             HHHHHHHhcChHHHHHhHHHHHHHH
Confidence            9999999999999888776655543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.86  E-value=1.4e-19  Score=178.45  Aligned_cols=264  Identities=15%  Similarity=0.131  Sum_probs=184.5

Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHH
Q 013568          138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS  215 (440)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~  215 (440)
                      +....++.... ....+.++.++++++|+|..++|++.++..++..+ +++.|+++||   +|  ||+.++.+.++..++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr---~g--~k~~l~~~~~~~~~~   89 (400)
T PRK11646         15 LLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR---FG--AKPMIVTGMLMRAAG   89 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH---hC--chHHHHHHHHHHHHH
Confidence            44444454554 56677788888888999999999999998888776 8899999999   45  788888888888888


Q ss_pred             HHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchH
Q 013568          216 WSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVR  295 (440)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~  295 (440)
                      .+.+. ..++.+.+++.+++.|++.+...+...+++.|.+|+++|+++.++......   +|..+||.+++++. .+||+
T Consensus        90 ~~~~~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~g~~ig~~l~g~l~-~~g~~  164 (400)
T PRK11646         90 FATMA-IAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDS---AGAVIGALLGSWLL-QYDFR  164 (400)
T ss_pred             HHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HhhHH
Confidence            77776 677888889999999999998888899999999999999999999887777   99999999999998 68999


Q ss_pred             HHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccc-cc
Q 013568          296 FVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH-SD  373 (440)
Q Consensus       296 ~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~-~~  373 (440)
                      +.|++.++..++..+ ..++.||.+..   +.+             ++..++.++.+++|.++...+..+.+..... ..
T Consensus       165 ~~f~~~~~~~~~~~i~~~~~~~~~~~~---~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (400)
T PRK11646        165 LVCATGAVLFVLAAAFNAWLLPAYKLS---TVR-------------TPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVM  228 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccccc---ccc-------------hhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence            999998877665544 33445543211   000             0111234566788887654433332222110 11


Q ss_pred             ceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhh-ccCCchhHHHHHHHH
Q 013568          374 SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFL-KNVPLRKIFLANTIF  428 (440)
Q Consensus       374 ~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~-~r~g~r~~l~~~~~~  428 (440)
                      ...+++. ++.+.++.+.+.+....+++.+.+....+++. ||++.++.+..+.++
T Consensus       229 ~~~p~~~-~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  283 (400)
T PRK11646        229 LMLPIMV-NDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLI  283 (400)
T ss_pred             HhhhhhH-HhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            1122333 34444777888888777776665555555555 456655555444433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.85  E-value=5.6e-20  Score=183.32  Aligned_cols=272  Identities=15%  Similarity=0.113  Sum_probs=172.4

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHH-HHhh--hhhH---HH-HhhhhhhccccCcCCCCcchhhh
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVI-SGFS--SLPW---LI-KPLYGFISDSLPLFGYRRRSYLV  206 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~-~s~~--~l~~---~~-~~~~g~l~Dr~~~~G~~rr~~l~  206 (440)
                      ...+++..+...++ .......| .++++++.+..+.+.+ .+..  ...+   .+ +++.|+++||   +|  ||+.++
T Consensus        17 ~~~~~~~~~~~~~d~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr---~G--rr~~l~   90 (434)
T PRK15075         17 ILRVTSGNFLEMFDFFLFGFYAT-AIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR---VG--RRKGLI   90 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh---hc--hHHHHH
Confidence            44566777888887 45555555 4555589988776543 2222  2222   23 5677999999   45  777888


Q ss_pred             HHHHHHHHHHHHHHhhhchhH--------HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHH
Q 013568          207 LSGLLGALSWSLMATIVESKY--------SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGG  278 (440)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~  278 (440)
                      .+.++..++.++++ +.++..        .++++|++.|++.+...+....++.|++|+++|++..++......   +|.
T Consensus        91 ~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~---~g~  166 (434)
T PRK15075         91 VTLSIMASGTLLIA-FVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQ---VAV  166 (434)
T ss_pred             HHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHH---HHH
Confidence            88888888877777 666655        368899999999999888888999999999999999998876666   666


Q ss_pred             HHHHHHHHHh--------hhccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHH
Q 013568          279 IVSSYFSGSM--------VDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEA  350 (440)
Q Consensus       279 ~ig~~i~g~l--------~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (440)
                      .+++.+++.+        .+.+|||++|++..+...+........||++.....+++      .    +.++.   ....
T Consensus       167 ~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~------~----~~~~~---~~~~  233 (434)
T PRK15075        167 VFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR------P----SMREI---FRSL  233 (434)
T ss_pred             HHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc------c----ccccH---HHHH
Confidence            6666666654        246899999997654332222222233333210000000      0    00111   1122


Q ss_pred             hcCcchhhhHHH-HHhhhcccc-ccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHH
Q 013568          351 VKQPNVFLPTLF-VFLWQATPH-SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIF  428 (440)
Q Consensus       351 l~~~~~~~~~l~-~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~  428 (440)
                      .++++.+..... .++...... .....+.++.+.+|++..+.++......++.+++.++.|++.||+|+|+.++.+.++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~  313 (434)
T PRK15075        234 AANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVL  313 (434)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            334443332211 111111000 111123333355899998888888888999999999999999999999988775544


Q ss_pred             H
Q 013568          429 G  429 (440)
Q Consensus       429 ~  429 (440)
                      .
T Consensus       314 ~  314 (434)
T PRK15075        314 A  314 (434)
T ss_pred             H
Confidence            3

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.84  E-value=1.4e-20  Score=186.41  Aligned_cols=286  Identities=17%  Similarity=0.142  Sum_probs=204.8

Q ss_pred             HHHHHHHHHHh-h-hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHH
Q 013568          138 VAMVYFVQGVL-G-LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGAL  214 (440)
Q Consensus       138 ~~~~~~~~~~~-~-~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~  214 (440)
                      +++.|+..... . +....+.. ++++.++...+.+.+.+++.++|++ ++++|.+.||++     -...+....+...+
T Consensus        50 ~~~~y~~~~~d~~si~~a~l~g-~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~-----ls~~l~~~~~~w~~  123 (495)
T KOG2533|consen   50 LCYLYFHAYLDKSSIVNASLSG-LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFP-----LSKGLSVSGILWGL  123 (495)
T ss_pred             HHHHHHHHhcchhcchhHHHcC-CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCC-----hHHHHHHHHHHHHH
Confidence            34444444443 2 33333322 4566899999999999999999999 889999999962     23334444334333


Q ss_pred             HHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhh-----
Q 013568          215 SWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV-----  289 (440)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~-----  289 (440)
                      ..++.+ ..++++.+++.|++.|+..+...|....++..++.+++|+.+++++.....   +|.++|++++..+.     
T Consensus       124 ~~~~~~-~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~---~g~i~ggliA~g~~~~~~~  199 (495)
T KOG2533|consen  124 FGFLTA-AVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASAS---LGNIFGGLIAYGVFKLNGS  199 (495)
T ss_pred             HHHHHH-HHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcc---hhhHHHHHHHHHhhhhcCC
Confidence            333333 468899999999999999999999999999999999999999999988877   99999999998863     


Q ss_pred             -hccchHHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCC------CCC-CCccchhhHHHHHHHHHHhcCcchhhhH
Q 013568          290 -DAYGVRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNL------PLG-DPSFFESSKQNMFQLWEAVKQPNVFLPT  360 (440)
Q Consensus       290 -~~~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~  360 (440)
                       ...||||.|++.+++.++..+ +.+++|+.|.+..-..+.+      +.+ ........+...+++++.+++|.+|.++
T Consensus       200 ~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~  279 (495)
T KOG2533|consen  200 GGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFS  279 (495)
T ss_pred             CCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHH
Confidence             356899999999998888776 5668898876321111100      000 0001011114567888999999999998


Q ss_pred             HHHHhhhcccccccee-eeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCchhHHHHHHHHHHHHh
Q 013568          361 LFVFLWQATPHSDSAM-FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKN----VPLRKIFLANTIFGTALG  433 (440)
Q Consensus       361 l~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r----~g~r~~l~~~~~~~~~~~  433 (440)
                      +..++......+...+ +++..+..|++..+++.+..+..++.+++.+++++++||    ..+|........+..+.+
T Consensus       280 l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g  357 (495)
T KOG2533|consen  280 LCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIG  357 (495)
T ss_pred             HHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            8777765533222222 333334467999999999999999999999999999999    556666666555555555

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.84  E-value=5e-20  Score=173.26  Aligned_cols=278  Identities=18%  Similarity=0.188  Sum_probs=203.2

Q ss_pred             ccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      ++.+.+...++..++. ......+.+.+++++|+|+.|.+++.++..+..++ ..+.|.+.||   +| .|| +..++.+
T Consensus        13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr---fG-gR~-~~~~s~~   87 (417)
T COG2223          13 RRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR---FG-GRK-WTILSML   87 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc---cC-chH-HHHHHHH
Confidence            3555666667766666 56666777788888999999999999888877666 8999999999   56 455 4455555


Q ss_pred             HHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHH
Q 013568          211 LGALSWSLMATIV---ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS  287 (440)
Q Consensus       211 ~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~  287 (440)
                      +.++-.+.++ ++   ++.+.+++++++.|++.+.. ......++.++|+|++|.+++++.    .+|+|..+..+++..
T Consensus        88 l~~IP~~~~~-~a~~~~~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~qG~AlGI~g----~GN~G~av~q~~~P~  161 (417)
T COG2223          88 LLLIPCLGLA-FAVTYPSTWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEKQGLALGIAG----AGNLGVAVAQLVAPL  161 (417)
T ss_pred             HHHHHHHHHH-HHccCCchHHHHHHHHHHhccccee-hcccccccccCChhhhhHHHHHhc----cccccHHHHHHHHHH
Confidence            6566555555 33   33458889999999887654 477789999999999999999986    345888888888888


Q ss_pred             hhhccc---hHHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHH
Q 013568          288 MVDAYG---VRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFV  363 (440)
Q Consensus       288 l~~~~g---w~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~  363 (440)
                      ++...|   |+.+..+..+..++..+ .++...+.+..++..++            ...  .+++.+.+++.+|.+.++.
T Consensus       162 v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~------------~~~--~~~~~v~~~~~~W~lsllY  227 (417)
T COG2223         162 VAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKP------------QLP--AQLKAVFSNKDTWLLSLLY  227 (417)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccc------------cch--hHHHHHhcCcchHHHHHHH
Confidence            888888   99998888877777655 45555555443221111            011  4566677899999887544


Q ss_pred             Hh-hhccccccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhhh
Q 013568          364 FL-WQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMT  435 (440)
Q Consensus       364 ~~-~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~~  435 (440)
                      +. +.........+..++.+++|.++.++|.+.....+...+.+.++|+++||+|.+|.+....++++++..+
T Consensus       228 ~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~  300 (417)
T COG2223         228 FATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAAL  300 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHH
Confidence            44 4442222333344555789999999999888888888899999999999999998888877776665543

>PRK09669 putative symporter YagG; Provisional

Probab=99.84  E-value=4e-19  Score=177.73  Aligned_cols=276  Identities=16%  Similarity=0.111  Sum_probs=181.8

Q ss_pred             HHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-Hhhhhhhcccc-CcCCCCcchhhhHHHHHH
Q 013568          136 FAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSL-PLFGYRRRSYLVLSGLLG  212 (440)
Q Consensus       136 ~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~-~~~G~~rr~~l~~~~~~~  212 (440)
                      +...++-+..+.. .....+++.|+.|++|++...+|.+.++..+..++ +|+.|+++||. .++| |||++++.+.+..
T Consensus        12 ~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~G-rrrp~il~~~~~~   90 (444)
T PRK09669         12 IGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHG-QFRPYLLWFAIPF   90 (444)
T ss_pred             HhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCC-CcchhHHHHHHHH
Confidence            3344444444443 45567888999999999999999999999988888 99999999998 5788 8899999887777


Q ss_pred             HHHHHHHHhhhch------hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhc-ccccccchhhhHHhhhhhhhHHHHHHHHH
Q 013568          213 ALSWSLMATIVES------KYSAALSILLGSLSVAFSDVVVDSMVVERAR-GESQSVSGSLQSLCWGSSAFGGIVSSYFS  285 (440)
Q Consensus       213 ~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~g~~ig~~i~  285 (440)
                      +++.+++. ..++      .....+..++.+.+.+....+..++.+|+.+ +++|.+..+.......   +|..+++.+.
T Consensus        91 ~i~~~l~f-~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~---~G~~i~~~~~  166 (444)
T PRK09669         91 GVVCLLTF-YTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSF---IGGLIVSVIA  166 (444)
T ss_pred             HHHHHHHH-hCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            77765544 3322      2334445566677777888889999999984 4677766555554444   6766666555


Q ss_pred             HHhhh-------ccchHHHHHHHHHHHHHHHHh-heeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchh
Q 013568          286 GSMVD-------AYGVRFVFGVTALLPLITSGV-AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVF  357 (440)
Q Consensus       286 g~l~~-------~~gw~~~f~i~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  357 (440)
                      ..+..       ..||+..+.+.+++.++..+. ++..+|+..+++  ++            .....++++.+++||.++
T Consensus       167 ~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~--~~------------~~~~~~~~~~~~~n~~~~  232 (444)
T PRK09669        167 LPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEV--DN------------SSSVWKDLKLLLGNSQWR  232 (444)
T ss_pred             HHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCC--cC------------CCCHHHHHHHHhCCchHH
Confidence            44332       347888888888777665553 445555432211  00            012334566778999877


Q ss_pred             hhHHHHHhhhcccc-ccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          358 LPTLFVFLWQATPH-SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       358 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      ..++..+++..... ......|+.....+ ++...+.+.....++.+++.++.+++.||+|+|+.+.++.++.++
T Consensus       233 ~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~  306 (444)
T PRK09669        233 IMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVI  306 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            76654444322111 12222344333444 333445555666778888999999999999999988876654443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.83  E-value=3.5e-19  Score=180.88  Aligned_cols=176  Identities=13%  Similarity=0.110  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHh-hhHHHHHHHHHHHh----cCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          137 AVAMVYFVQGVL-GLARLAVNFYLKDD----LHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~l~~~l~~~----~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      .+.+..+..++. .......+.+-.+.    .+.+..+.+++.+...+++.+ ++++|+++||   +|  ||+.+.++.+
T Consensus        20 ~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~---~G--rr~~~~~~~~   94 (502)
T TIGR00887        20 IAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADK---LG--RKRVYGMELI   94 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hc--cHHHHHHHHH
Confidence            345555666666 34444444332221    235566778899999999888 7889999999   45  8888888877


Q ss_pred             HHHHHHHHHHhhhch------hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHH
Q 013568          211 LGALSWSLMATIVES------KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYF  284 (440)
Q Consensus       211 ~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i  284 (440)
                      +..++.++.+ +..+      ...++++|++.|++.+...+....++.|++|+++|+++.++......   +|.++++.+
T Consensus        95 ~~~v~~~~~~-~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~---~g~~~g~~~  170 (502)
T TIGR00887        95 IMIIATVASG-LSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQG---FGILAGAIV  170 (502)
T ss_pred             HHHHHHHHHH-HccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHH---HHHHHHHHH
Confidence            7777776666 4433      56889999999999999999999999999999999999999888877   888888888


Q ss_pred             HHHhhh-----------------------ccchHHHHHHHHHHHHHHHHhheeecccccc
Q 013568          285 SGSMVD-----------------------AYGVRFVFGVTALLPLITSGVAVLVKEQQVL  321 (440)
Q Consensus       285 ~g~l~~-----------------------~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~  321 (440)
                      +.++..                       .++||+.|.+.++..++.++..+++||+|+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~  230 (502)
T TIGR00887       171 ALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRY  230 (502)
T ss_pred             HHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            765532                       2479999988888777777777889998764

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.83  E-value=1.1e-18  Score=174.78  Aligned_cols=254  Identities=12%  Similarity=0.058  Sum_probs=170.7

Q ss_pred             HHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHH
Q 013568          151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSA  229 (440)
Q Consensus       151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~  229 (440)
                      ....++.+. +++|++..+.+++.+.+.+...+ +|++|+++||   +|  ||+.++.+.++..++.++++ ..++.+.+
T Consensus        38 ~~~~~~~i~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr---~g--~r~~l~~~~~~~~~~~~~~~-~~~~~~~l  110 (455)
T TIGR00892        38 VTVFFKELQ-QIFQATYSETAWISSIMLAVLYAGGPISSILVNR---FG--CRPVVIAGGLLASLGMILAS-FSSNVIEL  110 (455)
T ss_pred             hhhhHHHHH-HHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH---cC--chHHHHhhHHHHHHHHHHHH-HhhhHHHH
Confidence            344455544 55899999999999988877766 8899999999   45  67788888777777777766 56777766


Q ss_pred             HH-HHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 013568          230 AL-SILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLIT  308 (440)
Q Consensus       230 ~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~  308 (440)
                      ++ .|++.|++.+...+...+++.++++ ++|+++.++.+.+..   +|..++|.+++++.+.+|||+.|++.+++.++.
T Consensus       111 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~---~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~  186 (455)
T TIGR00892       111 YLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSP---VFLSTLAPLNQYLFESFGWRGSFLILGGLLLHC  186 (455)
T ss_pred             HHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhccc---HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            54 5688899988765667778889886 688999988887777   999999999999999999999999999877665


Q ss_pred             HHhheeecccccc----CCC-cCCCCCCCC-Cc-cchhhHHHHHHH--HHHhcCcchhhhHHHHHhhhcccccccee-ee
Q 013568          309 SGVAVLVKEQQVL----GPS-RRQNLPLGD-PS-FFESSKQNMFQL--WEAVKQPNVFLPTLFVFLWQATPHSDSAM-FY  378 (440)
Q Consensus       309 ~~~~~~~~e~~~~----~~~-~~~~~~~~~-~~-~~~~~~~~~~~~--~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-~~  378 (440)
                      .+..+++.+.+..    +++ ++....... +. ..+...+..++.  .+.+++|.++..++..++..........+ ..
T Consensus       187 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  266 (455)
T TIGR00892       187 CVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVP  266 (455)
T ss_pred             HHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHH
Confidence            5543333221111    000 000000000 00 000001111111  35678888776665444433321111111 12


Q ss_pred             eeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 013568          379 FTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNV  416 (440)
Q Consensus       379 ~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~  416 (440)
                      +. ++.|+++.+++.+..+.+++.+++.++.+++.||.
T Consensus       267 ~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  303 (455)
T TIGR00892       267 YA-KDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK  303 (455)
T ss_pred             HH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            22 45799999999999999999999999999999873

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.83  E-value=2.4e-19  Score=172.71  Aligned_cols=251  Identities=22%  Similarity=0.289  Sum_probs=194.6

Q ss_pred             HHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHH
Q 013568          137 AVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGAL  214 (440)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~  214 (440)
                      .+.+.++...+. .......+.+.++ +|.+..+.+++.+...++..+ +|++|+++||   +|  ||+.+..+.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~---~g--~r~~~~~~~~~~~~   76 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDR---FG--RRRVLLLGLLLFAL   76 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH---hC--CchhhHHHHHHHHH
Confidence            345556666665 5666677777766 799999999999999999887 8999999999   45  67788888888888


Q ss_pred             HHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccch
Q 013568          215 SWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGV  294 (440)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw  294 (440)
                      +.+.+. ..++.+.+++.+++.|++.+...+...+++.|++|+++|++..++......   +|..+++.+++.+.+..+|
T Consensus        77 ~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~  152 (352)
T cd06174          77 GSLLLA-FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFG---LGALLGPLLGGLLAESLGW  152 (352)
T ss_pred             HHHHHH-HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHH---HHHHHHHHHHHHHHHHhhH
Confidence            877777 668888999999999999999999999999999999999999999887777   9999999999999998999


Q ss_pred             HHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccc-cc
Q 013568          295 RFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH-SD  373 (440)
Q Consensus       295 ~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~-~~  373 (440)
                      ++.|++.+++.++..+..++++                                     |.++...+..++...... ..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~  195 (352)
T cd06174         153 RWLFLILAILGLLLALLLLFLL-------------------------------------RLLLLLALAFFLLSFGYYGLL  195 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHHHHHHhHHHHHH
Confidence            9999998888777666554443                                     223333333333222111 11


Q ss_pred             ceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchh-HHHHHHHHHHHHhh
Q 013568          374 SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRK-IFLANTIFGTALGM  434 (440)
Q Consensus       374 ~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~-~l~~~~~~~~~~~~  434 (440)
                      .....+..+.+|.+..+.+.......++.+++..+.+++.||+++|+ .+..+.++..+..+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  257 (352)
T cd06174         196 TYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL  257 (352)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            11222233445889999999999999999999999999999999998 77776665554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.83  E-value=7.2e-19  Score=177.16  Aligned_cols=281  Identities=13%  Similarity=0.168  Sum_probs=182.9

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-Hhhhhhhcccc-CcCCCCcchhhhHHHHH
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSL-PLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~-~~~G~~rr~~l~~~~~~  211 (440)
                      .+...++.+..++. .....+++.|+.+.+|++...+|.+..+..+.-++ .|++|.++||. .++| |||++++.+.+.
T Consensus         8 ~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~G-rrrp~il~g~i~   86 (473)
T PRK10429          8 KLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWG-KFKPWILIGTLA   86 (473)
T ss_pred             HHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCC-CcchhHhhhhHH
Confidence            34455555555554 56777889999999999999999998888888777 89999999987 6789 889999999888


Q ss_pred             HHHHHHHHHhhhch------hHHHHHHHHHHHHHHHhhhhhhhHHHHhhh-cccccccchhhhHHhhhhhhhHHHHHHHH
Q 013568          212 GALSWSLMATIVES------KYSAALSILLGSLSVAFSDVVVDSMVVERA-RGESQSVSGSLQSLCWGSSAFGGIVSSYF  284 (440)
Q Consensus       212 ~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~~g~~ig~~i  284 (440)
                      .+++..++. ..++      ...+++..++.+++.+...++..++..|+. ++++|.+..+....+..   +|+.+++.+
T Consensus        87 ~~i~~~llf-~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~---ig~~~~~~~  162 (473)
T PRK10429         87 NSVVLFLLF-SAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFAS---LAGFVTAGF  162 (473)
T ss_pred             HHHHHHHHH-cCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            877765554 3221      223445556677888889999999999999 57788876666443333   665555544


Q ss_pred             HHHhhh-------ccchHHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcch
Q 013568          285 SGSMVD-------AYGVRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNV  356 (440)
Q Consensus       285 ~g~l~~-------~~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  356 (440)
                      ...+.+       ..||+....+.+++.++..+ .++..+|++...+.+.+++  ++    ...+   +..+.+++||.+
T Consensus       163 ~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--~~----~~~~---~~~~~~~~n~~~  233 (473)
T PRK10429        163 TLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEG--SH----LTLK---DIVALIYKNDQL  233 (473)
T ss_pred             HHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccc--cC----CCHH---HHHHHHhcCHHH
Confidence            443322       23577777777766665544 3444666532211111000  00    0112   223345688877


Q ss_pred             hhhHHHHHhhhcccc-ccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHH
Q 013568          357 FLPTLFVFLWQATPH-SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGT  430 (440)
Q Consensus       357 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~  430 (440)
                      +.+++..+++..... ......|+.....| ++...+.+.....++.+++.++.+++.||+|+|+.+.++.++.+
T Consensus       234 ~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~  307 (473)
T PRK10429        234 SCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPV  307 (473)
T ss_pred             HHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            766655444333221 12222344333444 55666777777778889999999999999999999877665443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.83  E-value=5.1e-19  Score=174.31  Aligned_cols=281  Identities=13%  Similarity=0.118  Sum_probs=179.0

Q ss_pred             ccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      +.+|.+...+++.... +...+.++.|+++++|++..+.|++.++..+++.+ +|++|+++||   +|  ||+.++.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr---~g--rr~~~~~~~~   76 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK---LG--LKKHLLWIIS   76 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--cHHHHHHHHH
Confidence            3567777777777776 67888999999988999999999999999999988 8999999999   45  5666655444


Q ss_pred             HHHHHHHHHHh--hhc-----hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHH
Q 013568          211 LGALSWSLMAT--IVE-----SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSY  283 (440)
Q Consensus       211 ~~~~~~~~~~~--~~~-----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~  283 (440)
                      ..+++......  ..+     .....++.+++.|++.+...+....+..|..++  ++...+.....   +++|.++||.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~---~~~g~~~g~~  151 (396)
T TIGR00882        77 GLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMF---GCVGWALCAS  151 (396)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhh---cccHHHHHHH
Confidence            43333222110  111     122334556777777777777777776665432  22233333333   3499999999


Q ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHHhhee-eccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHH
Q 013568          284 FSGSMVDAYGVRFVFGVTALLPLITSGVAVL-VKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLF  362 (440)
Q Consensus       284 i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~  362 (440)
                      ++|.+.+ ++|++.|++.+++.++..+..++ .+|++++++ .++..+  .+    ..+...++..+.+|+|.++..+++
T Consensus       152 ~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~----~~~~~~~~~~~~l~~~~~~~~~l~  223 (396)
T TIGR00882       152 IAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSSAT-VANALG--AN----ASAFSLKLALELFRQRKFWMFVLY  223 (396)
T ss_pred             HHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhh-hhcccc--cc----cCCCCHHHHHHHHcCCcHHHHHHH
Confidence            9998765 69999999988877776654443 333322111 110000  00    011122456778899988766555


Q ss_pred             HHhhhcccc-ccceeeeeeec---cCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          363 VFLWQATPH-SDSAMFYFTTN---ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       363 ~~~~~~~~~-~~~~~~~~~~~---~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      .+....... .......|..+   ..+.+....|.......+...++....+++.||+++|+.+.++.++.++
T Consensus       224 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l  296 (396)
T TIGR00882       224 VVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSV  296 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            444322111 11112222222   2355666778888888888888999999999999999988887765554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.83  E-value=7.1e-19  Score=195.61  Aligned_cols=245  Identities=11%  Similarity=0.072  Sum_probs=173.0

Q ss_pred             hhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhH--HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhh
Q 013568          168 AETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVL--SGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSD  244 (440)
Q Consensus       168 ~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  244 (440)
                      ...++..+++.+++++ +|++|+++||   +|  ||+++..  ...+.......+++..++++.++++|+++|++.++..
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr---~~--rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~  126 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADK---YD--KAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFG  126 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhh---cc--HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc
Confidence            4467788889999887 8999999999   45  6655422  1111222222223234788999999999999999999


Q ss_pred             hhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhheeeccccccCCC
Q 013568          245 VVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPS  324 (440)
Q Consensus       245 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~  324 (440)
                      ++..+++.|+++++++++++++.+.+..   +|.++||.++|++.+..||++.|++.+++.++.+++.+++++++.....
T Consensus       127 p~~~a~l~~~~~~~~~~~a~~~~~~~~~---ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (1140)
T PRK06814        127 PIKYSILPDHLNKDELLGANALVEAGTF---IAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAAPD  203 (1140)
T ss_pred             hHHHHhhHhhcCccccchhhHHHHHHHH---HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence            9999999999999999999999998888   9999999999999999999999966555555555566677765432211


Q ss_pred             cCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccc-cccceeeeeeeccCCCChhhHHHHHHHHHHHHH
Q 013568          325 RRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP-HSDSAMFYFTTNELGFTPEFLGRVKFVTSVASL  403 (440)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~  403 (440)
                      .+..     .   ...++....++.+.++|.+|..++..++..+.. .....+..|..+.+|.++...|++.+..+++.+
T Consensus       204 ~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~  275 (1140)
T PRK06814        204 LKID-----R---NIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVA  275 (1140)
T ss_pred             Ceec-----c---chHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            1100     0   011223334556678888777665444433211 122233444456789999999999999999999


Q ss_pred             HHHHHHHHhhccCCchhHHHHHHHH
Q 013568          404 LGVGLYNGFLKNVPLRKIFLANTIF  428 (440)
Q Consensus       404 ~g~~~~~~l~~r~g~r~~l~~~~~~  428 (440)
                      +|.++.+++.++..+++.+..+.++
T Consensus       276 ig~~~~g~l~~~~~~~~~~~~~~~~  300 (1140)
T PRK06814        276 VGSFLASKLSEGRITLLYVPIGALL  300 (1140)
T ss_pred             HHHHHHHHHhCCceeeeeehHHHHH
Confidence            9999999999877666554444333

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.83  E-value=3.5e-20  Score=186.55  Aligned_cols=246  Identities=11%  Similarity=0.036  Sum_probs=178.2

Q ss_pred             hcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHh-hhchhHHHHHHHHHHHHH
Q 013568          162 DLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMAT-IVESKYSAALSILLGSLS  239 (440)
Q Consensus       162 ~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~  239 (440)
                      +++++..+.|++.+.+.+++.+ +++.|+++||   +|  ||+.+..+.++..++.++... ...+...+++.|++.|++
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr---~g--~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~  144 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK---YV--FKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLA  144 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH---hC--cchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHh
Confidence            5899999999999999999998 8899999999   45  677777777766666555431 234567788999999999


Q ss_pred             HHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHhhe-eecc
Q 013568          240 VAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY-GVRFVFGVTALLPLITSGVAV-LVKE  317 (440)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~-gw~~~f~i~~~~~~~~~~~~~-~~~e  317 (440)
                      .+...+....++.|++|+++|+++.++...+..   +|.++++.+++++.+.+ |||+.|++.+++.++..++++ +.+|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  221 (465)
T TIGR00894       145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQ---LGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD  221 (465)
T ss_pred             cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999998887777   99999999999999884 999999999888776666444 4445


Q ss_pred             ccccCCCcCCCCC------CCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccc-ccceeeeeeeccCCCChhh
Q 013568          318 QQVLGPSRRQNLP------LGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH-SDSAMFYFTTNELGFTPEF  390 (440)
Q Consensus       318 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~  390 (440)
                      +|..++...++++      ..++..  . .......++.++++.+|...+..+++..... .....+.++.+.+|++..+
T Consensus       222 ~p~~~~~~~~~~~~~i~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~  298 (465)
T TIGR00894       222 DPSIHPCISKFEKKYINSSLQGQKG--S-TRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKE  298 (465)
T ss_pred             CcccCCCCCHHHHHHHHhhcccccC--C-CCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH
Confidence            4432211110000      000000  0 0001124567788888877665555433211 1122233444678999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 013568          391 LGRVKFVTSVASLLGVGLYNGFLKNVPL  418 (440)
Q Consensus       391 ~g~~~~~~~i~~~~g~~~~~~l~~r~g~  418 (440)
                      .|+......++.+++.++.|++.||.++
T Consensus       299 ~g~~~~~~~~~~~i~~~~~g~l~d~~~~  326 (465)
T TIGR00894       299 NGLLSSLPYLFAWLCSIFAGYLADFLKS  326 (465)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998653

>TIGR00896 CynX cyanate transporter

Probab=99.83  E-value=4.2e-19  Score=172.26  Aligned_cols=250  Identities=12%  Similarity=0.079  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHH
Q 013568          151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSA  229 (440)
Q Consensus       151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~  229 (440)
                      ....+|.+. +++|++.++.|++.+++.+++.+ +++.|+++||   +|  ||+.+..+.++..++.+..  ..++.+.+
T Consensus        19 ~~~~lp~l~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr---~g--~r~~~~~~~~~~~~~~~~~--~~~~~~~l   90 (355)
T TIGR00896        19 VGPLLPQIR-SALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR---FG--EERSVAAGLLLIAAGILIR--SAPGTALL   90 (355)
T ss_pred             CcccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH---hC--chHHHHHHHHHHHHHHHHH--HhccHHHH
Confidence            344555544 45899999999999999999988 8899999999   45  6777777776666555443  45677788


Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHH
Q 013568          230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY--GVRFVFGVTALLPLI  307 (440)
Q Consensus       230 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~--gw~~~f~i~~~~~~~  307 (440)
                      ++.|++.|++.+...+.....+.|.++ ++|+++.++.+....   +|..+++.+++.+.+..  +||+.|.+.+++.++
T Consensus        91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896        91 FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALM---GGAALAAAATVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            899999999999888788888888886 578888888877766   99999999999887765  399999877665443


Q ss_pred             HHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccccc-cceeeeeeeccCCC
Q 013568          308 TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHS-DSAMFYFTTNELGF  386 (440)
Q Consensus       308 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~g~  386 (440)
                      ...  .++++.+.+++.+++.          . +   ...++.+|+|.+|...+..++....... ......+. ++.|+
T Consensus       167 ~~~--~~~~~~~~~~~~~~~~----------~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~-~~~g~  229 (355)
T TIGR00896       167 ALL--AWIPQVRRRVAANQTT----------T-R---LTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAIL-ISHGA  229 (355)
T ss_pred             HHH--HHhhhhccccCCCCCC----------C-C---CCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Confidence            322  2334433211111000          0 0   1123456777776654433332221111 11122222 35799


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHH
Q 013568          387 TPEFLGRVKFVTSVASLLGVGLYNGFLKNVP-LRKIFLANTIFG  429 (440)
Q Consensus       387 s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g-~r~~l~~~~~~~  429 (440)
                      ++.+.+.+.....++.+++.++.+++.||++ +|+.+..+.++.
T Consensus       230 ~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~  273 (355)
T TIGR00896       230 SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQ  273 (355)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Confidence            9999999999999999999999999999995 555554444333

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.83  E-value=6.2e-19  Score=175.09  Aligned_cols=285  Identities=14%  Similarity=0.142  Sum_probs=171.3

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      ++++|.+.+.+++..+. +...+.++.|+++++|++..++|++.++..+++.+ +|++|+++||   +|  ||+.++++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr---~g--~r~~~~~~~   83 (420)
T PRK09528          9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK---LG--LKKHLLWII   83 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--chHHHHHHH
Confidence            34677777777777775 67788999999998999999999999999999988 8999999999   45  666665544


Q ss_pred             HHHHHHHHHHHhhh-chh-H-HHHHHHHHHHHHHHhhhhhhhHHHHhhhc--ccccccchhhhHHhhhhhhhHHHHHHHH
Q 013568          210 LLGALSWSLMATIV-ESK-Y-SAALSILLGSLSVAFSDVVVDSMVVERAR--GESQSVSGSLQSLCWGSSAFGGIVSSYF  284 (440)
Q Consensus       210 ~~~~~~~~~~~~~~-~~~-~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~g~~ig~~i  284 (440)
                      .+.+++........ ... . ......++.++..+.........+.++.+  .++++...+.......   +|.+++|.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~---~g~~i~~~~  160 (420)
T PRK09528         84 SGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGS---LGWALCAFI  160 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhh---HHHHHHHHH
Confidence            44333322111010 111 0 11122223333333222222222233322  1234444444444444   999999999


Q ss_pred             HHHhhhccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHH
Q 013568          285 SGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF  364 (440)
Q Consensus       285 ~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  364 (440)
                      +|++.+ .+|++.|++.+++.++.++..+++++++.+++..+++++  +    +..+...++.++.+|+|.+|...++.+
T Consensus       161 ~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~l~~~~~~~l~l~~~  233 (420)
T PRK09528        161 AGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALG--A----NASAVSLKDALALLKLPKFWFLVLYVI  233 (420)
T ss_pred             HHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchh--c----ccccccHHHHHHHccCCCeEeehHHHH
Confidence            998876 589999999888777766655544433322111111000  0    011223445667888988766554433


Q ss_pred             hhhcccc-ccceeeeeeec---cCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          365 LWQATPH-SDSAMFYFTTN---ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       365 ~~~~~~~-~~~~~~~~~~~---~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      ....... ....+..+..+   ..+.+..+.|.+.....++..++.++.+++.||+|+|+.+..+.++.++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~  304 (420)
T PRK09528        234 GVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAV  304 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            3222110 11112222221   2356667788888888888999999999999999999988776665444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.82  E-value=3.2e-18  Score=172.17  Aligned_cols=280  Identities=20%  Similarity=0.230  Sum_probs=202.8

Q ss_pred             ccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      +.+..+++..++..++ .+....++.++.+ +.-|+..++++.....++..+ +++.|.++||+     .||++++.+.+
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~-lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-----drrrili~~~~   83 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQ-LTGSPLMVALVQAASTLPILLLSLFAGALADRF-----DRRRILILSQL   83 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cchHHHHHHHH
Confidence            3455567777777776 4556566666666 688899999999999999877 99999999994     58888888777


Q ss_pred             HHHHHHHHHHhhh----chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHH
Q 013568          211 LGALSWSLMATIV----ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG  286 (440)
Q Consensus       211 ~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g  286 (440)
                      +.++..+.++.+.    .+.+.+++..++.|++.++..++.++++.|+.|+++...++++.+....   +..++||.++|
T Consensus        84 ~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~n---iar~iGPalgG  160 (524)
T PF05977_consen   84 LRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFN---IARIIGPALGG  160 (524)
T ss_pred             HHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHH---HHHhccchHHH
Confidence            6655444433221    3567778888999999999999999999999999999999998888777   99999999999


Q ss_pred             HhhhccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHh-cCcchhhhHHHHHh
Q 013568          287 SMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAV-KQPNVFLPTLFVFL  365 (440)
Q Consensus       287 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~l~~~~  365 (440)
                      .++...|-.++|++.++..++..+....++.++..++..+           +.....+++-.+.. ++|.+...++..++
T Consensus       161 ~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~-----------e~~~~~l~~G~ryv~~~~~l~~~l~~~~~  229 (524)
T PF05977_consen  161 ILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSSLPR-----------ERFFSALREGLRYVRSSPPLRSVLLRSFL  229 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccch-----------hhhhhhHHHHHHHHhcchHHHHHHHHHHH
Confidence            9999999999999988877665554444443322111111           12222333333333 46665555444444


Q ss_pred             hhcccc-ccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 013568          366 WQATPH-SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTAL  432 (440)
Q Consensus       366 ~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~  432 (440)
                      +.+... ....++++..+.+|.++..+|++.+..++|.++|.++.+++.+|++.++++..+.++.++.
T Consensus       230 ~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~  297 (524)
T PF05977_consen  230 FNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALA  297 (524)
T ss_pred             HHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHH
Confidence            433221 1222344445778999999999999999999999999999999999888877766655543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.82  E-value=3.3e-18  Score=165.92  Aligned_cols=288  Identities=19%  Similarity=0.221  Sum_probs=211.5

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-Hhhhhhhcccc-CcCCCCcchhhhHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSL-PLFGYRRRSYLVLSGL  210 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~-~~~G~~rr~~l~~~~~  210 (440)
                      +.+....+-+..++. .....++..|+.|.+|+++..+|.++.+.-+--++ .|+.|.++||. .|+| ||||+++.+.+
T Consensus        13 eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~G-rfRP~lL~g~i   91 (467)
T COG2211          13 EKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWG-RFRPWLLWGAI   91 (467)
T ss_pred             HHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccc-cccHHHHHHhH
Confidence            344556666666665 67888999999999999999999998888888888 89999999999 7899 99999999988


Q ss_pred             HHHHHHHHHHhhhc------hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcc-cccccchhhhHHhhhhhhhHHHHHHH
Q 013568          211 LGALSWSLMATIVE------SKYSAALSILLGSLSVAFSDVVVDSMVVERARG-ESQSVSGSLQSLCWGSSAFGGIVSSY  283 (440)
Q Consensus       211 ~~~~~~~~~~~~~~------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~g~~ig~~  283 (440)
                      ..++...++. .++      ......+...+.+++++....+..++.+++.++ +||.+..+....+..   +|..+...
T Consensus        92 p~~i~~~l~F-~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~---~g~~l~~~  167 (467)
T COG2211          92 PFAIVAVLLF-ITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFAS---LGGLLVAV  167 (467)
T ss_pred             HHHHHHHHHH-cCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            8888777666 343      234556777899999999999999999999965 678877777766655   77666666


Q ss_pred             HHHHhhh-------ccchHHHHHHHHHHHHHHHHhhe-eeccccccCCCcCCCCCCCCCccchhhHHH-HHHHHHHhcCc
Q 013568          284 FSGSMVD-------AYGVRFVFGVTALLPLITSGVAV-LVKEQQVLGPSRRQNLPLGDPSFFESSKQN-MFQLWEAVKQP  354 (440)
Q Consensus       284 i~g~l~~-------~~gw~~~f~i~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~  354 (440)
                      +.+.+..       ..||+....+.+++..+..+.++ -.+|+..+....+.           ..+.. .+++...++|+
T Consensus       168 ~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~-----------~~~~~~~~~~~~~~~Nr  236 (467)
T COG2211         168 LFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT-----------GVKLKLKDSFLLIFKNR  236 (467)
T ss_pred             HHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc-----------cccccHHHHHHHHHccc
Confidence            6665542       35788888887777766666444 45665442221111           11222 23344567888


Q ss_pred             chhhhHHHHHhhhccc-cccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013568          355 NVFLPTLFVFLWQATP-HSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALG  433 (440)
Q Consensus       355 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~  433 (440)
                      .+...++..++..... ...+.+.||.+..+|.++............+.+++.++.+++.+|+|+|+++.++.++.++..
T Consensus       237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~  316 (467)
T COG2211         237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGY  316 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            8777665444433322 244445666667889888888888888888899989999999999999999999987777766


Q ss_pred             hhhh
Q 013568          434 MTQV  437 (440)
Q Consensus       434 ~~~l  437 (440)
                      +...
T Consensus       317 ~~~~  320 (467)
T COG2211         317 LLLY  320 (467)
T ss_pred             HHHH
Confidence            5543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.81  E-value=2.1e-19  Score=178.80  Aligned_cols=276  Identities=19%  Similarity=0.251  Sum_probs=198.7

Q ss_pred             HHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-Hhhhhhhcccc-CcCCCCcchhhhHHHHHHHHHHHHH
Q 013568          143 FVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSL-PLFGYRRRSYLVLSGLLGALSWSLM  219 (440)
Q Consensus       143 ~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~-~~~G~~rr~~l~~~~~~~~~~~~~~  219 (440)
                      +...+. .....++.+|+.+.+|+++..+|++..+..+..++ +|+.|.++||. .|+| |||++++.+.++.+++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~G-rrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWG-RRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccccc-ccceEeehhhHHHHHHHHHh
Confidence            444443 45666888888998999999999998888888777 99999999987 6789 99999999999998887777


Q ss_pred             Hhhh-c-------hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcc-cccccchhhhHHhhhhhhhHHHHHHHHHHHhhh
Q 013568          220 ATIV-E-------SKYSAALSILLGSLSVAFSDVVVDSMVVERARG-ESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD  290 (440)
Q Consensus       220 ~~~~-~-------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~  290 (440)
                      . .. +       ....+.+..++..++......+..++..|+.++ ++|.+..+....+..   +|.++...+.+.+.+
T Consensus        90 f-~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~---~g~~l~~~~~~~l~~  165 (428)
T PF13347_consen   90 F-SPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSM---IGSLLASFLAPILVS  165 (428)
T ss_pred             h-ccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHH---HHHHHHHHHhhhhhh
Confidence            6 33 2       112345666777899999999999999999975 678877777776666   677666666665553


Q ss_pred             cc-------chHHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHH
Q 013568          291 AY-------GVRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLF  362 (440)
Q Consensus       291 ~~-------gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~  362 (440)
                      ..       +|++..++.+++.++..+ ..+..+|++...+.+++            .....+..+..++||.++..++.
T Consensus       166 ~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~------------~~~~~~~~~~~~~nr~~~~l~~~  233 (428)
T PF13347_consen  166 WFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK------------KISLRDSLRSLFRNRPFRILLLA  233 (428)
T ss_pred             hhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc------------ccccccchhhhcccchHHHHHHH
Confidence            21       699999998888877666 45567772222111111            11223345667788887777666


Q ss_pred             HHhhhcccc-ccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhhhh
Q 013568          363 VFLWQATPH-SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQ  436 (440)
Q Consensus       363 ~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~~~  436 (440)
                      .++...... ......|+..+.+|.+ ...+.+.....++.+++.++.+++.||+|+|+.+..+.++.++..+..
T Consensus       234 ~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~  307 (428)
T PF13347_consen  234 FFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLL  307 (428)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHH
Confidence            555444322 2333345555566755 566777788888999999999999999999999998888777665543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.81  E-value=4e-18  Score=168.85  Aligned_cols=270  Identities=14%  Similarity=0.096  Sum_probs=176.3

Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHH
Q 013568          138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS  215 (440)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~  215 (440)
                      +++.+|..... +...+.++.++++++|++..++|++.++..++..+ ++++|.++||   +| +||+++.++.++..++
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr---~g-~~r~~~~~~~~~~~~~   82 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK---WL-SAQKVYAVCHFAGALL   82 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc-ccHHHHHHHHHHHHHH
Confidence            55666666665 67778899999888999999999999999999988 8999999999   45 5677777777666666


Q ss_pred             HHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhh--------hcccccccchhhhHHhhhhhhhHHHHHHHHHHH
Q 013568          216 WSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVER--------ARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS  287 (440)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~--------~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~  287 (440)
                      ..... +.++++.+.+.+++.+++.+...+...++..+.        .....|.+..+         ++|.++||.++|.
T Consensus        83 ~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G---------~lG~~ig~~l~g~  152 (418)
T TIGR00889        83 LFFAA-QVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG---------TIGFIAAMWAVSL  152 (418)
T ss_pred             HHHHH-HhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh---------hHHHHHHHHHHHH
Confidence            55555 567788888888888888776666655554322        22233333222         2788888888887


Q ss_pred             hhhccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhh
Q 013568          288 MVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQ  367 (440)
Q Consensus       288 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~  367 (440)
                      +.....|. .|++.+++.++..+..+++||++..+++++.       +   ..+....+..+.+|+|+++.+.+..++..
T Consensus       153 l~~~~~~~-~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-------~---~~~~~~~~~~~~~k~~~~~~~~~~~~~~~  221 (418)
T TIGR00889       153 LDIELSNI-QLYITAGSSALLGVFALTLPDIPVAKSTAKM-------S---IKVMLGLDAFILFKNKRMAIFFFFSMLLG  221 (418)
T ss_pred             hcccchhH-HHHHHHHHHHHHHHHHhcCCCCCCCcccccc-------C---HHHHhhhhHHHHhcCCCeeeHHHHHHHHH
Confidence            73333354 3556666555555555677776432111100       0   00111112345778998776665555533


Q ss_pred             ccccccceeeeeeeccCCCC--------hhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 013568          368 ATPHSDSAMFYFTTNELGFT--------PEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTAL  432 (440)
Q Consensus       368 ~~~~~~~~~~~~~~~~~g~s--------~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~  432 (440)
                      ........+...+.++.|.+        ....+.......++.+++.++.+++.||+|+|+++..+.++..+.
T Consensus       222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~  294 (418)
T TIGR00889       222 APLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALR  294 (418)
T ss_pred             hHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            31111111111111334443        356688888899999999999999999999999998887766554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11462 putative transporter; Provisional

Probab=99.81  E-value=4e-18  Score=170.74  Aligned_cols=270  Identities=16%  Similarity=0.127  Sum_probs=182.5

Q ss_pred             HHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-Hhhhhhhcccc-CcCCCCcchhhhHHHHHHH
Q 013568          137 AVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSL-PLFGYRRRSYLVLSGLLGA  213 (440)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~-~~~G~~rr~~l~~~~~~~~  213 (440)
                      ...++-+..++. .....++..|+.|.+|+++..+|.+..+..+.-++ .|+.|.++||. .++| ||||+++++.+..+
T Consensus        13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~G-r~rp~il~g~i~~~   91 (460)
T PRK11462         13 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWG-KFRPWVLFGALPFG   91 (460)
T ss_pred             hhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCC-CcchhHhHHHHHHH
Confidence            344444444444 56677888899999999999999998888888888 99999999998 6789 99999999988888


Q ss_pred             HHHHHHHhhhch------hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhc-ccccccchhhhHHhhhhhhhHHHHHHHHHH
Q 013568          214 LSWSLMATIVES------KYSAALSILLGSLSVAFSDVVVDSMVVERAR-GESQSVSGSLQSLCWGSSAFGGIVSSYFSG  286 (440)
Q Consensus       214 ~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g  286 (440)
                      ++.+++. ..+.      ...+.+..++..+++.....+..++.+|+.+ +++|.+..++...+..   +|..+++.+..
T Consensus        92 i~~~llf-~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~---iG~~~~~~~~~  167 (460)
T PRK11462         92 IVCVLAY-STPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLAT---AGGMLSTVLMM  167 (460)
T ss_pred             HHHHHHH-hCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            7766655 3332      2234555667788999999999999999997 5688888777776665   77777776665


Q ss_pred             Hhhhc-------cchHHHHHHHHHHHHHHHHhhe-eeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhh
Q 013568          287 SMVDA-------YGVRFVFGVTALLPLITSGVAV-LVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFL  358 (440)
Q Consensus       287 ~l~~~-------~gw~~~f~i~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  358 (440)
                      .+.+.       .||+....+.+++.++..++.+ ..+|++..+  +++          ..   ..+.++..++|+.++.
T Consensus       168 plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~--~~~----------~~---~~~~l~~~~~Nk~~~~  232 (460)
T PRK11462        168 PLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAP--PTT----------TS---MREDLRDIWQNDQWRI  232 (460)
T ss_pred             HHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCC--ccC----------CC---HHHHHHHHhCChHHHH
Confidence            55443       3577777777776655554333 445543211  100          01   2234556778887666


Q ss_pred             hHHHHHhhhcccc-ccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHH
Q 013568          359 PTLFVFLWQATPH-SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTI  427 (440)
Q Consensus       359 ~~l~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~  427 (440)
                      ++...++...... ......|+.....|. +...+.+....+++.+++..+++++.||+++|+.+..+..
T Consensus       233 l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~  301 (460)
T PRK11462        233 VGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNA  301 (460)
T ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence            5543333222111 122223333334453 3445566677888899999999999999999888764443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.81  E-value=7.5e-19  Score=172.19  Aligned_cols=244  Identities=17%  Similarity=0.184  Sum_probs=163.9

Q ss_pred             CChhhhHHHHHh--hhhhHH---H-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH--------HHH
Q 013568          165 LDPAETAVISGF--SSLPWL---I-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY--------SAA  230 (440)
Q Consensus       165 ~s~~~~g~~~s~--~~l~~~---~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~  230 (440)
                      .++++.+.+.+.  +..++.   + ++++|+++||   +|  ||+.++.+.++..++.++++ +.+++.        .++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr---~g--~r~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  100 (394)
T TIGR00883        27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR---IG--RKKTLVITLLMMGIGTLLIG-LLPSYATIGIWAPILLL  100 (394)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh---hh--hHHHHHHHHHHHHHHHHHHh-hCCChhhhHHHHHHHHH
Confidence            455666655443  233332   3 6788999999   45  77888888888888877776 555543        478


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhh--------hccchHHHHHHHH
Q 013568          231 LSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV--------DAYGVRFVFGVTA  302 (440)
Q Consensus       231 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~--------~~~gw~~~f~i~~  302 (440)
                      +.|++.|++.+...+....++.|++++++|++..++...+..   +|.++++.+++.+.        +.++||+.|++.+
T Consensus       101 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  177 (394)
T TIGR00883       101 LARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAP---VGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSA  177 (394)
T ss_pred             HHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHH
Confidence            889999999999888999999999999999998888887777   88888888776553        3578999999887


Q ss_pred             HHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcc--hhhhHHHHHhhhcccc-ccceeeee
Q 013568          303 LLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPN--VFLPTLFVFLWQATPH-SDSAMFYF  379 (440)
Q Consensus       303 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~l~~~~~~~~~~-~~~~~~~~  379 (440)
                      ++.++..+.....+|++..+..+++.+            +..++.++.+++++  ++...+..++...... .......+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (394)
T TIGR00883       178 VLVLIGLYLRRNLEETPVFEKAQEKHK------------KKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTY  245 (394)
T ss_pred             HHHHHHHHHHHhcCCChhHHHHHhccc------------cccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766665555455666543221111100            00111233444443  4443333333222111 11122333


Q ss_pred             eeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHH
Q 013568          380 TTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFG  429 (440)
Q Consensus       380 ~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~  429 (440)
                      ..+++|.++.+.+.......++.+++.++.+++.||+|+|+.+.....+.
T Consensus       246 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~  295 (394)
T TIGR00883       246 LTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLA  295 (394)
T ss_pred             HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            34668899999999999999999999999999999999999777544433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.81  E-value=3.8e-18  Score=190.16  Aligned_cols=284  Identities=11%  Similarity=0.039  Sum_probs=187.8

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCCh--hhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDP--AETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~--~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      .+..+++..++..+. ......+..++..+++.+.  ...+++.+++.+++.+ ++++|+++||   +|  ||+.++++.
T Consensus        10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr---~g--rk~~l~~~~   84 (1146)
T PRK08633         10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK---FS--KNRVIRIVK   84 (1146)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc---cc--HHHHHHHHH
Confidence            444455555555544 3444445555554466654  3468888889999888 8899999999   45  777777766


Q ss_pred             HHHHHHHHHHH--hhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHH
Q 013568          210 LLGALSWSLMA--TIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS  287 (440)
Q Consensus       210 ~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~  287 (440)
                      ++.++..++..  ...++++.++++|++.|++.+...++..+++.|++++++|++++++.+.+..   +|.++|+.++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~---ig~~lg~~l~~~  161 (1146)
T PRK08633         85 LFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTI---VAILAGTALFSF  161 (1146)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHH---HHHHHHHHHHHH
Confidence            54443333222  2346788899999999999999999999999999999999999999988887   999999999999


Q ss_pred             hhhc--------c-chHHHHHHHHHHH-HHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchh
Q 013568          288 MVDA--------Y-GVRFVFGVTALLP-LITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVF  357 (440)
Q Consensus       288 l~~~--------~-gw~~~f~i~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  357 (440)
                      +.+.        + +|.+.+.+.++.. ++.+++.+++||.+.......+..  .    ....+...+.+..++++|.++
T Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~l~~~~~~~  235 (1146)
T PRK08633        162 LFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKK--K----YLFPKLLWRNLKLLRSDRVLW  235 (1146)
T ss_pred             HHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccccc--c----cccHHHHHHHHHHHhcCcHHH
Confidence            8875        2 3445444443333 333344556676543322110000  0    011122334455567788777


Q ss_pred             hhHHHHHhhhcc-ccccceeeeeeeccCCCChh-hHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          358 LPTLFVFLWQAT-PHSDSAMFYFTTNELGFTPE-FLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       358 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~g~s~~-~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      ..++..+++... ......++.+..+.+|++.. ..|++....+++.++|.++.+++.||+++++.+.++.++.++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~  311 (1146)
T PRK08633        236 LAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLAL  311 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHH
Confidence            655443332221 11222233444467899988 899999999999999999999999999988777665544443

>TIGR00898 2A0119 cation transport protein

Probab=99.81  E-value=1e-18  Score=177.77  Aligned_cols=260  Identities=16%  Similarity=0.129  Sum_probs=179.7

Q ss_pred             HHHhcCCC---hhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 013568          159 LKDDLHLD---PAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSIL  234 (440)
Q Consensus       159 l~~~~g~s---~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (440)
                      +.+++|++   ..+.+++.+++.+++.+ .+++|+++||   +|  ||++++++.++..++.++.+ ++++++.++++|+
T Consensus       115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr---~G--rr~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~r~  188 (505)
T TIGR00898       115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR---FG--RKKVLLLSTLVTAVSGVLTA-FSPNYTVFLVFRL  188 (505)
T ss_pred             EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh---cc--chHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHH
Confidence            44568998   88999999999999998 7889999999   45  77888888888888877777 7789999999999


Q ss_pred             HHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhee
Q 013568          235 LGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVL  314 (440)
Q Consensus       235 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~  314 (440)
                      +.|++.+...+...+++.|++|+++|+...++...++.   +|.++++.+++.+.+   ||+.|++.++..++..+..++
T Consensus       189 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~---~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~  262 (505)
T TIGR00898       189 LVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFS---LGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWF  262 (505)
T ss_pred             HHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHH---HHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999888877777   899999988776643   999999999888777776678


Q ss_pred             eccccccCCCcCCC--------------CCCCCCcc-----chhhHHH--HHHHHHHhcCcchhhhHHHHHhhhcccc-c
Q 013568          315 VKEQQVLGPSRRQN--------------LPLGDPSF-----FESSKQN--MFQLWEAVKQPNVFLPTLFVFLWQATPH-S  372 (440)
Q Consensus       315 ~~e~~~~~~~~~~~--------------~~~~~~~~-----~~~~~~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~-~  372 (440)
                      +||+++....+.+.              ........     .+...+.  ....++++++|.++...+...+..+... .
T Consensus       263 ~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  342 (505)
T TIGR00898       263 VPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFS  342 (505)
T ss_pred             cCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            88876421110000              00000000     0000000  0134566778876655433322211100 1


Q ss_pred             cceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhh
Q 013568          373 DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGM  434 (440)
Q Consensus       373 ~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~  434 (440)
                      .....+ ....++.+.   .......++..+++.++.+++.||+|||+.+.++.++.++..+
T Consensus       343 ~~~~~~-~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l  400 (505)
T TIGR00898       343 YYGLVL-DLGNLGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALL  400 (505)
T ss_pred             HHHHhc-cccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            111111 113445443   2333456677888999999999999999998887766655543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.80  E-value=9.4e-18  Score=156.97  Aligned_cols=280  Identities=16%  Similarity=0.169  Sum_probs=216.3

Q ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568          134 DNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG  212 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~  212 (440)
                      .+..+...++..++.......+.+.+++.++++..+++++...+..+|.+ ..+.|++.+|   +|  +|.-++++..+.
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk---~g--yk~gi~lgL~l~   88 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK---LG--YKAGIVLGLLLY   88 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH---hh--hHHHHHHHHHHH
Confidence            45566677778888776677788888888999999999999999999998 6788999999   45  777888998888


Q ss_pred             HHHHHHHH--hhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh
Q 013568          213 ALSWSLMA--TIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD  290 (440)
Q Consensus       213 ~~~~~~~~--~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~  290 (440)
                      ++++.++.  ....++...+++.++.|.|.+...+..+.++..+.+++....++.+.+..++   +|.++||+++++++.
T Consensus        89 avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~---lGa~~gp~~g~~lil  165 (422)
T COG0738          89 AVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNG---LGAILGPLLGSSLIL  165 (422)
T ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhh---hHHHHHHHHHHHHHH
Confidence            88877664  1346777888899999999999999999999999999887888888888888   999999999998876


Q ss_pred             c-------------------cchHHHHHHHHHHHHHHHHhhee--eccccccCCCcCCCCCCCCCccchhhHHHHHHHHH
Q 013568          291 A-------------------YGVRFVFGVTALLPLITSGVAVL--VKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWE  349 (440)
Q Consensus       291 ~-------------------~gw~~~f~i~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (440)
                      +                   -.|+++|.+.+...++..+....  .|+.+...+...+.            +..  ...+
T Consensus       166 s~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~------------~~~--~~~~  231 (422)
T COG0738         166 SGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGAS------------GSA--GLSS  231 (422)
T ss_pred             hhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccccc------------ccc--hHHH
Confidence            2                   13788888777666555554433  33333222111110            000  3567


Q ss_pred             HhcCcchhhhHHHHHhhhcccccccee-eeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHH
Q 013568          350 AVKQPNVFLPTLFVFLWQATPHSDSAM-FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIF  428 (440)
Q Consensus       350 ~l~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~  428 (440)
                      ++++|.++...+..|+|...+.....+ ..+..+..|.+..+.+...+..+++.++|++++.++.+|+...|.+....++
T Consensus       232 l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~  311 (422)
T COG0738         232 LFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALI  311 (422)
T ss_pred             HHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            788999999999999998855433333 3334455899999999999999999999999999999999999988887766


Q ss_pred             HHHHhhh
Q 013568          429 GTALGMT  435 (440)
Q Consensus       429 ~~~~~~~  435 (440)
                      ..++++.
T Consensus       312 ~ill~~~  318 (422)
T COG0738         312 AILLLLA  318 (422)
T ss_pred             HHHHHHH
Confidence            6655543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.78  E-value=9.2e-18  Score=164.43  Aligned_cols=268  Identities=18%  Similarity=0.201  Sum_probs=188.7

Q ss_pred             HHhcC--CChhhhH----HHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHH--hhhchhHHHH
Q 013568          160 KDDLH--LDPAETA----VISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMA--TIVESKYSAA  230 (440)
Q Consensus       160 ~~~~g--~s~~~~g----~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~--~~~~~~~~~~  230 (440)
                      .+.+|  ++.++..    .+.+++.++.++ ..+.|+++||   +|  ||..+.+..++..++.+++.  ...+.+..++
T Consensus        46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~---~G--RK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li  120 (485)
T KOG0569|consen   46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADR---FG--RKNALLLSNLLAVLAALLMGLSKSAPSFEMLI  120 (485)
T ss_pred             HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hc--chHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34456  5555444    456667777777 5677999999   56  77777776666555544433  3457788999


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHH-hh-hccchHHHHHHHHHHHHHH
Q 013568          231 LSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS-MV-DAYGVRFVFGVTALLPLIT  308 (440)
Q Consensus       231 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~-l~-~~~gw~~~f~i~~~~~~~~  308 (440)
                      +.|++.|+..+.......-++.|+.|.+.||..+.+..++..   +|..+|..++.. +. +...|.+.+....+.+++.
T Consensus       121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~---~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~  197 (485)
T KOG0569|consen  121 LGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVV---IGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ  197 (485)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHH---HHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888888887   888888766653 22 3456999999999999999


Q ss_pred             HHhheeeccccccCCC----cCCC----CCCCCC----ccchhh-----HH-----HHHHHHHHhcCcchhhhH----HH
Q 013568          309 SGVAVLVKEQQVLGPS----RRQN----LPLGDP----SFFESS-----KQ-----NMFQLWEAVKQPNVFLPT----LF  362 (440)
Q Consensus       309 ~~~~~~~~e~~~~~~~----~~~~----~~~~~~----~~~~~~-----~~-----~~~~~~~~l~~~~~~~~~----l~  362 (440)
                      ++...++||+|+.--.    ++++    +..++.    ...+..     .+     ....+++++++|......    ..
T Consensus       198 l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v  277 (485)
T KOG0569|consen  198 LALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVV  277 (485)
T ss_pred             HHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHH
Confidence            9999999999864111    0000    000111    000000     00     111366778877655432    22


Q ss_pred             HHhhhccccccceeeeeee---ccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhhhhh
Q 013568          363 VFLWQATPHSDSAMFYFTT---NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQV  437 (440)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~---~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~~~l  437 (440)
                      .+..++  .+..+.++|.+   +..|++..++.++....++..++..+++.++.||+|||.+++.+..++.+..++..
T Consensus       278 ~~~qq~--sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~  353 (485)
T KOG0569|consen  278 SFAQQF--SGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMS  353 (485)
T ss_pred             HHHHHh--cCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            222222  23333333333   57899999999999999999999999999999999999999999988887776554

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.77  E-value=7.9e-19  Score=173.61  Aligned_cols=250  Identities=16%  Similarity=0.114  Sum_probs=186.9

Q ss_pred             HhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHH
Q 013568          161 DDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIV-ESKYSAALSILLGSL  238 (440)
Q Consensus       161 ~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~  238 (440)
                      ++++.+..+.+++.+.+..|+.+ +.+.|+++||   +|  -|+++..+.++.+++.++....+ .+++.++++|+++|+
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k---~G--~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl  140 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK---FG--ARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGL  140 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH---cC--chHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHH
Confidence            35789999999999999999999 7788999999   46  56677777777777776665333 344577999999999


Q ss_pred             HHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHhhe-eec
Q 013568          239 SVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA-YGVRFVFGVTALLPLITSGVAV-LVK  316 (440)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~-~gw~~~f~i~~~~~~~~~~~~~-~~~  316 (440)
                      +.+...++...+.+.|.|++||++..++...+..   +|.+++-.++|++.+. +||+++|++.++++++..++++ +..
T Consensus       141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q---~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQ---LGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999888887776   9999999999999988 9999999999999988877655 555


Q ss_pred             cccccCCCcCCCCC---CCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccc-cccceeeeeeeccCCCChhhHH
Q 013568          317 EQQVLGPSRRQNLP---LGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP-HSDSAMFYFTTNELGFTPEFLG  392 (440)
Q Consensus       317 e~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g  392 (440)
                      |+|.+++...+++.   .+++...+..+......+++++++.+|.+.+..+...... ......+.|+.+.+|++..+.|
T Consensus       218 d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G  297 (466)
T KOG2532|consen  218 DSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETG  297 (466)
T ss_pred             CCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhh
Confidence            55543221111000   0000000000001113567789999998887666654421 1222335556688999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCc
Q 013568          393 RVKFVTSVASLLGVGLYNGFLKNVPL  418 (440)
Q Consensus       393 ~~~~~~~i~~~~g~~~~~~l~~r~g~  418 (440)
                      ++.++..+.+.+..+++|.++||...
T Consensus       298 ~~salP~l~~~~~k~~~g~lsD~l~~  323 (466)
T KOG2532|consen  298 FLSALPFLAMAIVKFVAGQLSDRLTF  323 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999998644

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.76  E-value=5.7e-17  Score=163.19  Aligned_cols=175  Identities=11%  Similarity=0.126  Sum_probs=135.1

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhh-HHHHhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLP-WLIKPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~-~~~~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .++.+++..+...+. +.....++.|+++++|++.++.+++.+.+... +...+++|+++||+  +|  ||+.++.+.++
T Consensus        15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~--~G--~r~~~~~g~~~   90 (489)
T PRK10207         15 PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHL--LG--TKRTIVLGAIV   90 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhc--cc--hHHHHHHHHHH
Confidence            466666666666666 56777888999988999999999988887744 44477889999984  56  88888888888


Q ss_pred             HHHHHHHHHhhhch-hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccc--cccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          212 GALSWSLMATIVES-KYSAALSILLGSLSVAFSDVVVDSMVVERARGES--QSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       212 ~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      ..++.+.++ ++.+ ...++++|+++|+|.+...+...+++.|.+|+++  |+.+.+++.++..   +|.++||.++|++
T Consensus        91 ~~~g~~~~~-~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~n---ig~~~g~~l~g~l  166 (489)
T PRK10207         91 LAIGYFMTG-MSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSIN---IGSLISLSLAPVI  166 (489)
T ss_pred             HHHHHHHHH-HhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHH---HHHHHHHHHHHHH
Confidence            888887777 4444 3335578999999999998899999999998874  3555566665555   9999999999999


Q ss_pred             hhccchHHHHHHHHHHHHHHHHhheeec
Q 013568          289 VDAYGVRFVFGVTALLPLITSGVAVLVK  316 (440)
Q Consensus       289 ~~~~gw~~~f~i~~~~~~~~~~~~~~~~  316 (440)
                      .+++|||+.|++.++..++..+.+.+.+
T Consensus       167 ~~~~gw~~~F~i~~i~~~~~~~~~~~~~  194 (489)
T PRK10207        167 ADKFGYSVTYNLCGAGLIIALLVYFACR  194 (489)
T ss_pred             HHhhChHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999997654444444333333

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1e-18  Score=162.31  Aligned_cols=232  Identities=17%  Similarity=0.215  Sum_probs=183.2

Q ss_pred             cCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q 013568          163 LHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVA  241 (440)
Q Consensus       163 ~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  241 (440)
                      .+-+.+++|++++...+...+ +|+.|.+.||   .|  +|.-++++..++.++.++++ +.++++.++++|.++|+|.+
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~---iG--y~ipm~~Gl~vmf~sTilFa-fg~sy~~l~vAR~LQgvgsA  174 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDR---IG--YKIPMVAGLFVMFLSTILFA-FGNSYPMLFVARSLQGVGSA  174 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHH---hc--cccHHHHHHHHHHHHHHHHH-HcchhHHHHHHHHHhhhhHH
Confidence            466778899999999999887 9999999999   45  78788899999999998888 88999999999999999999


Q ss_pred             hhhhhhhHHHHhhhccc-ccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhheeeccccc
Q 013568          242 FSDVVVDSMVVERARGE-SQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQV  320 (440)
Q Consensus       242 ~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~  320 (440)
                      +..+...++++|.+|++ +|++++++.-.+.+   +|-++||.+||.+.+..|.+..|.+.+++.++...+.+++-|+.+
T Consensus       175 ~~~tsglamlAd~f~~d~er~~vmGialgfis---lG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~  251 (464)
T KOG3764|consen  175 FADTSGLAMLADVFPEDNERGSVMGIALGFIS---LGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE  251 (464)
T ss_pred             HHHhhhHHHHHHHcccchhhhHHHHHHHHHHh---ccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence            99999999999999987 57988888776777   999999999999999999999999999999888776665555433


Q ss_pred             cCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhc-cccccceeeeeeeccCCCChhhHHHHHHHHH
Q 013568          321 LGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQA-TPHSDSAMFYFTTNELGFTPEFLGRVKFVTS  399 (440)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~  399 (440)
                      .++...               ++-...++++++|.++.........+. .....-....|..+...-+..+.|+.+....
T Consensus       252 ~~~~~~---------------~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~  316 (464)
T KOG3764|consen  252 MDPDST---------------EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPAS  316 (464)
T ss_pred             cCcccc---------------ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccc
Confidence            222111               111236678899988776543333222 1112333334444666644558999999999


Q ss_pred             HHHHHHHHHHHHhhccCCc
Q 013568          400 VASLLGVGLYNGFLKNVPL  418 (440)
Q Consensus       400 i~~~~g~~~~~~l~~r~g~  418 (440)
                      +..++|..+.+.+.||++.
T Consensus       317 ~~y~ig~~lfg~la~k~~~  335 (464)
T KOG3764|consen  317 LSYAIGTNLFGKLADKYPH  335 (464)
T ss_pred             cchhccCchHHHHHHhcCc
Confidence            9999999999999999984

>PRK09848 glucuronide transporter; Provisional

Probab=99.75  E-value=4.9e-16  Score=155.65  Aligned_cols=280  Identities=14%  Similarity=0.104  Sum_probs=169.1

Q ss_pred             HHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-Hhhhhhhcccc-CcCCCCcchhhhHHHHHHH
Q 013568          137 AVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSL-PLFGYRRRSYLVLSGLLGA  213 (440)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~-~~~G~~rr~~l~~~~~~~~  213 (440)
                      ...++-+...+. +.....++.|+++.+|++..++|++.++..+..++ +|++|+++||. +++| |||++++.+.+...
T Consensus        12 ~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~G-r~~~~~~~~~~~~~   90 (448)
T PRK09848         12 GYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWG-KFRPFLLFGTAPLM   90 (448)
T ss_pred             hhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCc-CchHHHHHHHHHHH
Confidence            344444444444 45556677899998999999999999999998888 89999999998 6678 88888877766555


Q ss_pred             HHHHHHHhhh----ch--hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcc-cccccchhhhHHhhh--hhhhHHHHHHHH
Q 013568          214 LSWSLMATIV----ES--KYSAALSILLGSLSVAFSDVVVDSMVVERARG-ESQSVSGSLQSLCWG--SSAFGGIVSSYF  284 (440)
Q Consensus       214 ~~~~~~~~~~----~~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~--~~~~g~~ig~~i  284 (440)
                      +..+++....    .+  .....+..++.+++.+...++..++..++.++ ++|.+..+....+..  ..+++..++|.+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i  170 (448)
T PRK09848         91 IFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSI  170 (448)
T ss_pred             HHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5444432122    11  12234445677888888888888888887755 567766555443322  223555666666


Q ss_pred             HHHhhhcc--chHHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHH
Q 013568          285 SGSMVDAY--GVRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTL  361 (440)
Q Consensus       285 ~g~l~~~~--gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l  361 (440)
                      .+......  +|.....+.+++.++..+ .....+|+...+.  ++             ....+..+.+++||.++...+
T Consensus       171 ~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~--~~-------------~~~~~~~~~l~~n~~f~~~~~  235 (448)
T PRK09848        171 KNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIV--AQ-------------PSLKISLQTLKRNRPLFMLCI  235 (448)
T ss_pred             HHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCc--cC-------------CCHHHHHHHHhCCchHHHHHH
Confidence            55331111  121111222333333222 2334455432111  00             012233556789998777665


Q ss_pred             HHHhhhccc-cccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 013568          362 FVFLWQATP-HSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTAL  432 (440)
Q Consensus       362 ~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~  432 (440)
                      ..+++.... .......++..+.+|.++...++......++.+++.++.+++.||+|+|+.+.++.++.++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~  307 (448)
T PRK09848        236 GALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCG  307 (448)
T ss_pred             HHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            444433321 12223445555678876655555555556778889999999999999999988877655443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.75  E-value=2e-16  Score=161.00  Aligned_cols=254  Identities=19%  Similarity=0.211  Sum_probs=176.4

Q ss_pred             hhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhh
Q 013568          169 ETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVV  247 (440)
Q Consensus       169 ~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  247 (440)
                      +.+++.++..++..+ +++.|+++|+   +|  ||..++++.++..++.++.+ ++++..+++++|++.|+|.|....+.
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~---~G--Rk~~l~~~~~~~~iG~ii~~-~a~~~~~l~~GR~l~G~g~G~~~~~~  163 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDR---IG--RKKTLLLAVVLFLIGAIIIA-LAPSWYQLIVGRILTGLGVGGASVLA  163 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---hh--hHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHhccchhhhhhcc
Confidence            458999999999888 7889999999   46  88899999999999999888 88899999999999999999999999


Q ss_pred             hHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc--cchHHHHHHHHHHHHHHHHhheeeccccccCCCc
Q 013568          248 DSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA--YGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSR  325 (440)
Q Consensus       248 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~--~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~  325 (440)
                      ..+++|+.|++.||...+..+....   +|..++ .+.+...++  ++||..+.+..+.+++..+..+++||+|+.-.+.
T Consensus       164 piy~sEiap~~~RG~l~~~~~l~~~---~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~  239 (513)
T KOG0254|consen  164 PVYISEIAPAHIRGTLVSLYQLFIT---IGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEK  239 (513)
T ss_pred             hhhHhhcCChhhhHHHHHHHHHHHH---HHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHc
Confidence            9999999999999999888888877   888888 444544444  4899999999888888777778899988652221


Q ss_pred             CCCC-------CCCC--CccchhhHHHHH-----H--------HHHHhcCcchhh----hHHHHHhhhccccccceeeee
Q 013568          326 RQNL-------PLGD--PSFFESSKQNMF-----Q--------LWEAVKQPNVFL----PTLFVFLWQATPHSDSAMFYF  379 (440)
Q Consensus       326 ~~~~-------~~~~--~~~~~~~~~~~~-----~--------~~~~l~~~~~~~----~~l~~~~~~~~~~~~~~~~~~  379 (440)
                      .+..       ..++  +...+...+..+     .        .+.-+..|..+.    .+....+.++ . +.....+|
T Consensus       240 g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~-t-G~~~~~~Y  317 (513)
T KOG0254|consen  240 GRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQL-T-GINYVFYY  317 (513)
T ss_pred             CChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHH-h-CCceEEee
Confidence            1110       0111  000000000000     0        011111132222    2222223333 2 33333333


Q ss_pred             ee---ccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhhh
Q 013568          380 TT---NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMT  435 (440)
Q Consensus       380 ~~---~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~~  435 (440)
                      ..   +..|.+... .....+.++..+++..++.++.||+|||++++.+...+.+..++
T Consensus       318 ~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~  375 (513)
T KOG0254|consen  318 STTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVI  375 (513)
T ss_pred             hHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH
Confidence            33   456666443 45556677788888888899999999999999988777766553

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.75  E-value=7.3e-16  Score=152.70  Aligned_cols=287  Identities=17%  Similarity=0.187  Sum_probs=174.0

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-Hhhhhhhcccc-CcCCCCcchhhhHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSL-PLFGYRRRSYLVLSGL  210 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~-~~~G~~rr~~l~~~~~  210 (440)
                      +++.++...+...+. ......+++|+++ +|++....+++..+..+...+ +|++|+++||. .++| |||++++.+.+
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~G-RRrp~il~g~~   82 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFG-RRRPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCC-ChHHHHHHHHH
Confidence            444455555555555 5667777888766 899999999998888877766 99999999975 4588 88888877777


Q ss_pred             HHHHHHHHHHhhhchh-----------------HHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccc--ccchhhhHHhh
Q 013568          211 LGALSWSLMATIVESK-----------------YSAALSILLGSLSVAFSDVVVDSMVVERARGESQ--SVSGSLQSLCW  271 (440)
Q Consensus       211 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~  271 (440)
                      ..+++..+++ ++++.                 ...+++..+..++.+...++..++++|+.|+++|  +.+.++.+.+.
T Consensus        83 ~~~~~l~ll~-~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~  161 (477)
T TIGR01301        83 LVAFAVILIG-FAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFM  161 (477)
T ss_pred             HHHHHHHHHH-hCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHH
Confidence            7777766666 43332                 1223444455667888888999999999998865  46777777777


Q ss_pred             hhhhhHHHHHHHHHHHh--hhcc-------------chHHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCc
Q 013568          272 GSSAFGGIVSSYFSGSM--VDAY-------------GVRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPS  335 (440)
Q Consensus       272 ~~~~~g~~ig~~i~g~l--~~~~-------------gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~  335 (440)
                      .   +|.++|+.++++.  .+.+             +.++.|++.+++.++..+ ..++.+|.+...+++.++++.++..
T Consensus       162 ~---lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~  238 (477)
T TIGR01301       162 A---IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPS  238 (477)
T ss_pred             H---HHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhccccc
Confidence            7   9999999999875  2211             568899998887777665 5667888764322211100000000


Q ss_pred             cchhhHHHHHHHHHHhc-Cc-chhhhHHHHHhhhccccccceeeeeee-----ccCCCChh------h---HH-HHHHHH
Q 013568          336 FFESSKQNMFQLWEAVK-QP-NVFLPTLFVFLWQATPHSDSAMFYFTT-----NELGFTPE------F---LG-RVKFVT  398 (440)
Q Consensus       336 ~~~~~~~~~~~~~~~l~-~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~g~s~~------~---~g-~~~~~~  398 (440)
                       .......++++++.++ -| .++.+++..++..+   ....+.+|.+     +.++-++.      +   .| +.....
T Consensus       239 -~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~---a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~  314 (477)
T TIGR01301       239 -KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWI---AWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLN  314 (477)
T ss_pred             -ccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHH---HHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHH
Confidence             0011223344444443 23 35555544444222   1111111111     22332221      1   12 223445


Q ss_pred             HHHHHHHHHHHHHhhccCCc-hhHHHHHHHHHH
Q 013568          399 SVASLLGVGLYNGFLKNVPL-RKIFLANTIFGT  430 (440)
Q Consensus       399 ~i~~~~g~~~~~~l~~r~g~-r~~l~~~~~~~~  430 (440)
                      .+...+.+++..++.+|+|+ |+....+.++.+
T Consensus       315 s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~  347 (477)
T TIGR01301       315 SVVLGITSIGMEKLCRGWGAGKRLWGIVNIILA  347 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            55666777788889999985 555455543333

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.73  E-value=9.8e-16  Score=148.36  Aligned_cols=170  Identities=15%  Similarity=0.103  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCCChhh-hHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHH
Q 013568          138 VAMVYFVQGVLGLARLAVNFYLKDDLHLDPAE-TAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS  215 (440)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~-~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~  215 (440)
                      +|+..|+..+........| ++.+++|++.++ .|.+.+.+..+|++ +.+.|+++||+   |  -|+++.++.+...+.
T Consensus        32 lC~fGF~~e~R~n~s~a~p-~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl---G--~K~vL~l~~l~Wsl~  105 (511)
T TIGR00806        32 LCFYGFMAQFRPGESFITP-YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL---R--YKPVLVLQALSFVCV  105 (511)
T ss_pred             HHHHHHHHHhhchHHHHHH-HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh---C--chHHHHHHHHHHHHH
Confidence            4444455555545554444 555579999999 99999999999999 88999999994   4  778888888888888


Q ss_pred             HHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchH
Q 013568          216 WSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVR  295 (440)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~  295 (440)
                      .++++ ++++...+.++|++.|++.|... +...++..++|+++|+++.++...+..   +|.+++++++++ ...+|||
T Consensus       106 t~L~~-fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~---vG~~Ia~~L~ql-l~s~gWr  179 (511)
T TIGR00806       106 WLLLL-LGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVL---LGVFLSSVLGQL-LVTLGWI  179 (511)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHhcCch
Confidence            88888 77889999999999999999998 999999999999999999999887777   999999999999 4568998


Q ss_pred             HHHHHH---HHHHHHHHHhheeecccc
Q 013568          296 FVFGVT---ALLPLITSGVAVLVKEQQ  319 (440)
Q Consensus       296 ~~f~i~---~~~~~~~~~~~~~~~e~~  319 (440)
                      +-+.+.   .....+++++.+++|..+
T Consensus       180 ~y~~Ln~Isl~s~~~a~~~a~~LP~~~  206 (511)
T TIGR00806       180 SYSTLNIISLVFMTFSVFLALFLKRPK  206 (511)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            775443   333344555667777544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.72  E-value=9e-16  Score=154.37  Aligned_cols=173  Identities=16%  Similarity=0.154  Sum_probs=138.6

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHh--cCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDD--LHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~--~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      .++.+.+..+...+. +.....++.|++++  +|++..+.+++.+.+.+...+ .+++|+++||+  +|  ||+.++++.
T Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~--~G--~~~~l~~~~   86 (475)
T TIGR00924        11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRV--WG--TKKTMVLGG   86 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhh--cc--hHHHHHHHH
Confidence            456666667776666 56777899999887  899999999999999988777 67889999993  46  788888888


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccc---cccchhhhHHhhhhhhhHHHHHHHHHH
Q 013568          210 LLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGES---QSVSGSLQSLCWGSSAFGGIVSSYFSG  286 (440)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~ig~~i~g  286 (440)
                      ++.+++.++++ .+++.+.+.+.+++.|++.+...+...++++|++++++   |+.+.+++..   +.|+|.++||.+++
T Consensus        87 ~~~~~g~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~---~~niG~~ig~~l~g  162 (475)
T TIGR00924        87 IVLMLGHFMLA-MSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYM---SINIGSFISPLLAG  162 (475)
T ss_pred             HHHHHHHHHHH-hcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHH---HHHHHHHHHHHHHH
Confidence            88888877777 56667777888999999999988899999999998765   5555555444   44599999999999


Q ss_pred             HhhhccchHHHHHHHHHHHHHHHHhhee
Q 013568          287 SMVDAYGVRFVFGVTALLPLITSGVAVL  314 (440)
Q Consensus       287 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~  314 (440)
                      ++.+++||++.|++.++..++..+.+++
T Consensus       163 ~l~~~~g~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       163 VIAENYGYHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence            9999899999999988665555444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.70  E-value=7e-15  Score=148.79  Aligned_cols=170  Identities=12%  Similarity=0.116  Sum_probs=128.2

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .++.+++..++..+. +....+++.|+++++|++..+.+++.+.+...... .+++|+++||+  +|  ||+.++.+.++
T Consensus        22 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~--~G--~r~~~~~g~~~   97 (500)
T PRK09584         22 AFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKV--LG--TKRVIMLGAIV   97 (500)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cc--hHHHHHHHHHH
Confidence            466666666666665 57777899999888999999988877766544333 56889999993  36  77788888888


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccc--ccchhhhHHhhhhhhhHHHHHHHHHHHhh
Q 013568          212 GALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQ--SVSGSLQSLCWGSSAFGGIVSSYFSGSMV  289 (440)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~~~~g~~ig~~i~g~l~  289 (440)
                      ..++..+++...++...+.+.+++.|++.+...+...+++.|++|++++  ..+.+++..+.   ++|.++||.++|++.
T Consensus        98 ~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~---~iG~~~gp~i~g~l~  174 (500)
T PRK09584         98 LAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSI---NIGSFFSMLATPWLA  174 (500)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHH---HHHHHHHHHHHHHHH
Confidence            8877777663223455667788999999998888888999999986542  23444444444   499999999999999


Q ss_pred             hccchHHHHHHHHHHHHHHHH
Q 013568          290 DAYGVRFVFGVTALLPLITSG  310 (440)
Q Consensus       290 ~~~gw~~~f~i~~~~~~~~~~  310 (440)
                      +++|||+.|++.++..++..+
T Consensus       175 ~~~g~~~~F~i~~i~~~i~~i  195 (500)
T PRK09584        175 AKYGWSVAFALSVVGMLITVV  195 (500)
T ss_pred             HhhCHHHHHHHHHHHHHHHHH
Confidence            999999999998765555443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.69  E-value=5e-16  Score=149.45  Aligned_cols=281  Identities=16%  Similarity=0.173  Sum_probs=169.0

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhH-HHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVL-SGL  210 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~-~~~  210 (440)
                      .++.+...++...+. +...+..+.+++++.|+|.+++|.+.++..+...+ +|+.|.++||   .| .||..+.. +.+
T Consensus         8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk---lg-~kK~Ll~~i~~l   83 (412)
T PF01306_consen    8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK---LG-LKKHLLWFIAIL   83 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH---CT-TCSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch---hh-hhHHHHHHHHHH
Confidence            566777777777776 78888999999987799999999999998887777 9999999999   56 56655443 222


Q ss_pred             HHHHHHHHHHhh----hchhH-HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHH
Q 013568          211 LGALSWSLMATI----VESKY-SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS  285 (440)
Q Consensus       211 ~~~~~~~~~~~~----~~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~  285 (440)
                      +...+......+    ..+.. ..+++-+..++......++..++..+....+.-.     ++-....|++|.+++..++
T Consensus        84 ~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~fe-----YG~~R~wGSig~ai~s~~~  158 (412)
T PF01306_consen   84 LLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFE-----YGRARMWGSIGFAIASLLA  158 (412)
T ss_dssp             HHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCC-----cchHHHHhhHHHHHHHHHh
Confidence            222222111111    12221 1122222333444445556666666655443211     2222233458999999999


Q ss_pred             HHhhhccchHHHHHHHHHHHHHHHHhheeec-cccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHH
Q 013568          286 GSMVDAYGVRFVFGVTALLPLITSGVAVLVK-EQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF  364 (440)
Q Consensus       286 g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  364 (440)
                      |.+.+ .+-+..||+..+.+++..++.++.+ +.++..+..+....       ++.+...++..+++|+|++|.+.++..
T Consensus       159 G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~k~~~fw~~~l~v~  230 (412)
T PF01306_consen  159 GILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGA-------KKDKVSLKDVLSLFKMRNFWFFVLFVI  230 (412)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS-------------HHHHHHHTTSHHHHHHHHHHH
T ss_pred             heeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccccc-------CCCCCcHHHHHHHhcchhHHHHHHHHH
Confidence            99986 5677888887766655555443333 32221111111000       122345677889999999999887666


Q ss_pred             hhhccc-cccceeeeeee---ccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          365 LWQATP-HSDSAMFYFTT---NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       365 ~~~~~~-~~~~~~~~~~~---~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      .....+ .....+..|+.   +..+.+....|++.+..-+..++...+.+++.+|+|.|+.++++.+++++
T Consensus       231 g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~i  301 (412)
T PF01306_consen  231 GVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAI  301 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHH
Confidence            543322 12333322222   23344556789999999999999999999999999999999988777654

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.69  E-value=6.9e-16  Score=142.78  Aligned_cols=244  Identities=18%  Similarity=0.198  Sum_probs=157.7

Q ss_pred             CCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Q 013568          164 HLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAF  242 (440)
Q Consensus       164 g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  242 (440)
                      +.+..-.|.+-+.+.+...+ .|.||-++||   +|  ||++++++.+..+++..+.+ .+.++..+++.|++.|+..+.
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~---yG--Rkpvll~c~~~va~s~ll~~-~S~~F~afv~aR~l~Gi~kgn  137 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDR---YG--RKPVLLACLIGVALSYLLWA-LSRNFAAFVLARFLGGIFKGN  137 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhh---hC--chHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhccCc
Confidence            33455678888889999888 8999999999   45  99999999999999888877 888996666779999999887


Q ss_pred             hhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh---ccchHHHH---HHHHHHHHH-HHHhheee
Q 013568          243 SDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD---AYGVRFVF---GVTALLPLI-TSGVAVLV  315 (440)
Q Consensus       243 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~---~~gw~~~f---~i~~~~~~~-~~~~~~~~  315 (440)
                      .. +..++++|++++++|+.+++..+..++   +|.++||.+||++.+   ..|--+-+   ++..+++.. ..+..+++
T Consensus       138 l~-v~rAiisdV~sek~r~l~ms~v~~a~~---lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~l  213 (451)
T KOG2615|consen  138 LS-VIRAIISDVVSEKYRPLGMSLVGTAFG---LGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFL  213 (451)
T ss_pred             hH-HHHHHHHhhcChhhccceeeeeehhhh---cchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhC
Confidence            64 788999999999999999999999999   999999999999987   22311111   222222222 23355688


Q ss_pred             ccccccCCCcCCCCCCCC--CccchhhHHHHHHHHHHhcCcchhh------h-HHHHHhhhcccc-ccceeeeeeeccCC
Q 013568          316 KEQQVLGPSRRQNLPLGD--PSFFESSKQNMFQLWEAVKQPNVFL------P-TLFVFLWQATPH-SDSAMFYFTTNELG  385 (440)
Q Consensus       316 ~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~------~-~l~~~~~~~~~~-~~~~~~~~~~~~~g  385 (440)
                      ||+-+.++..+.+...++  ++..+..+.....-...++|+....      . .+-.++|..... .......+..+.+|
T Consensus       214 pETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg  293 (451)
T KOG2615|consen  214 PETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFG  293 (451)
T ss_pred             CccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccC
Confidence            887543322211111000  0011111111222223455553221      1 111222222111 11111222236799


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 013568          386 FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVP  417 (440)
Q Consensus       386 ~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g  417 (440)
                      +++.+.|.+....++.+++......+..+|.+
T Consensus       294 ~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~  325 (451)
T KOG2615|consen  294 YSSMQQGKVLSTTGLLMLVIQLALVPILPRYK  325 (451)
T ss_pred             CChhhheeeeehhhHHHHHHHHhccccccccc
Confidence            99999999998888877777766677677765

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.67  E-value=1.1e-14  Score=142.47  Aligned_cols=272  Identities=20%  Similarity=0.286  Sum_probs=178.8

Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHH
Q 013568          138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS  215 (440)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~  215 (440)
                      +...+|.+.+. +...+.++.|+++ .|+|.+++|.+.++..+...+ .|++|+++||.   + ++|+++.+..++.++.
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~---~-~~~~~l~~~~l~~~~~   81 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRF---G-SAKRILALLSLLSALA   81 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHh---h-hHHHHHHHHHHHHHHH
Confidence            55556666665 6777788999998 599999999999998888887 67999999994   3 5677776666665555


Q ss_pred             HHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHH-HHHhhhccc-
Q 013568          216 WSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYF-SGSMVDAYG-  293 (440)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i-~g~l~~~~g-  293 (440)
                      ..... ..++++.++++.++..+......+..+++..+...+++ ...+.....    |++|-+++... ++.+....+ 
T Consensus        82 ~~~~~-~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~-~~YG~iRlw----GSiGf~~~~~~~~~~~~~~~~~  155 (400)
T PF03825_consen   82 LLLLA-FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRG-KDYGRIRLW----GSIGFIVAALAFGGLLGGYLGI  155 (400)
T ss_pred             HHHHH-HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccc-CCCCcchhh----hhHHHHHHHHHHHHHHHhhhcc
Confidence            44444 55677777777788888888888888888888876432 223333321    22666666443 233333222 


Q ss_pred             --hHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccc
Q 013568          294 --VRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH  371 (440)
Q Consensus       294 --w~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~  371 (440)
                        ..+.+++.++..++.....+.+|+.+.+++.+++           ..+...++.++++|+|++..+.+..++.+....
T Consensus       156 ~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~-----------~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~  224 (400)
T PF03825_consen  156 SGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKES-----------VKKLLGLDALKLLKNPRFLVFLLAAFLIGISHA  224 (400)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhCCCCccccccCCC-----------cccccchHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence              3345666665555444455667776532221111           111223345678999998887776666655221


Q ss_pred             ccceeeeeeeccCC-CChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          372 SDSAMFYFTTNELG-FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       372 ~~~~~~~~~~~~~g-~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      ....+...+-++.| .+....|....+..++.++..+..+++.+|+|.++++.++.++.++
T Consensus       225 ~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~v  285 (400)
T PF03825_consen  225 AYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAV  285 (400)
T ss_pred             HHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            11122111225666 6777788888888889999999999999999999999888766543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.66  E-value=4.8e-15  Score=149.01  Aligned_cols=147  Identities=16%  Similarity=0.235  Sum_probs=113.7

Q ss_pred             HHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHH
Q 013568          154 AVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALS  232 (440)
Q Consensus       154 ~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (440)
                      ...+++..++|-+ ....|+.+...++.++ .|+.|.++|.   +|  ||.+++.+.++..++.++.+ .+++...++.+
T Consensus        65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl---fG--Rr~~~i~g~~l~vvG~Iv~a-tA~~~~~~iag  137 (599)
T PF06609_consen   65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL---FG--RRYFFIIGSLLGVVGSIVCA-TAQNMNTFIAG  137 (599)
T ss_pred             HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH---hc--chHHHHHHHHHHHhHHHHhh-cCCcHHHHHHH
Confidence            3334555557765 5566777777787777 8899999998   66  99999999999999998888 88999999999


Q ss_pred             HHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHh
Q 013568          233 ILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGV  311 (440)
Q Consensus       233 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~  311 (440)
                      ..+.|+|.|... .....++|+.|.+.|.....+......   +...+++.++..+..+.+|||.|++.+++..+.++.
T Consensus       138 ~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i---~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  138 MVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFI---ITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             HHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHH---hhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence            999999988776 455668999999988766555544333   444466777766666678999999999887776653

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.65  E-value=3.5e-14  Score=134.41  Aligned_cols=265  Identities=18%  Similarity=0.173  Sum_probs=180.3

Q ss_pred             HHHhcCCChhhhHHHHHhhhhhHHHHhhhhhhccccC-cCCCCcchhhhHHHHHHHHHHHHHHh----hhc-------hh
Q 013568          159 LKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLP-LFGYRRRSYLVLSGLLGALSWSLMAT----IVE-------SK  226 (440)
Q Consensus       159 l~~~~g~s~~~~g~~~s~~~l~~~~~~~~g~l~Dr~~-~~G~~rr~~l~~~~~~~~~~~~~~~~----~~~-------~~  226 (440)
                      +..|+++.....+.+.++..+..-..+.+|+.||+.+ .+|+||-|++..+..+...+..+...    ...       +.
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~   85 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF   85 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence            4456899999888886666555555889999999997 89989999999988877765444331    112       11


Q ss_pred             --H--HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHH
Q 013568          227 --Y--SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTA  302 (440)
Q Consensus       227 --~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~  302 (440)
                        +  ...++..+.|+|.+...+...+++.|..++++|++..++.-.+..   +|.+++..+.|.+.+.+...-...+..
T Consensus        86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli---~G~iv~ai~~g~lL~~~s~~rL~~v~~  162 (403)
T PF03209_consen   86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLI---VGIIVSAIVFGRLLDPFSPERLIQVIQ  162 (403)
T ss_pred             HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHH---HHHHHHHHHHHHHccccCHHHHHHHHH
Confidence              1  234667888999999999999999999999999999888877777   999999999999888776443333322


Q ss_pred             HHHHH---HHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccc-ccceeee
Q 013568          303 LLPLI---TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH-SDSAMFY  378 (440)
Q Consensus       303 ~~~~~---~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~~~  378 (440)
                      ...++   ..++..+-.|++..+.....++  ++    ...++   ...++..+|+...+.++.++...... -+...-.
T Consensus       163 ~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~--~~----~~f~~---a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEP  233 (403)
T PF03209_consen  163 GVALIALLLNLIALWGQEPRRSRRAAAAER--PR----PPFRE---AWRQVWASPQARRFFVFLFLGTLAFFMQDVILEP  233 (403)
T ss_pred             HHHHHHHHHHHHHHHhcccCCcccccCCCC--CC----ccHHH---HHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCC
Confidence            22222   2223334445444332211110  00    12233   33445578887777776666554222 2223334


Q ss_pred             eeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhc-cCCchhHHHHHHHHHHHHhhh
Q 013568          379 FTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLK-NVPLRKIFLANTIFGTALGMT  435 (440)
Q Consensus       379 ~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~-r~g~r~~l~~~~~~~~~~~~~  435 (440)
                      |--+.+|++..+...+....+.|.++|..+.+++.. |.++++.-.+++.++++...+
T Consensus       234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l  291 (403)
T PF03209_consen  234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL  291 (403)
T ss_pred             chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence            455789999999999999999999999999998875 677777776666666555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.63  E-value=2.8e-14  Score=131.96  Aligned_cols=256  Identities=16%  Similarity=0.145  Sum_probs=188.6

Q ss_pred             HHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHH
Q 013568          154 AVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALS  232 (440)
Q Consensus       154 ~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (440)
                      .+...+++++|+|.+.+|+++++..+.+.+ .|+..++..|   +|  -...+..+.++..++..+=.  ..+...++..
T Consensus        33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~---~g--~er~l~~~Llli~~G~~iR~--~~~~~~L~~g  105 (395)
T COG2807          33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR---FG--EERSLFLALLLIAAGILIRS--LGGLPLLFLG  105 (395)
T ss_pred             hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH---Hh--hHHHHHHHHHHHHHHHHHHh--cccHHHHHHH
Confidence            344456677999999999999999999887 8999999998   56  45566667666666654433  2356677888


Q ss_pred             HHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHh
Q 013568          233 ILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY-GVRFVFGVTALLPLITSGV  311 (440)
Q Consensus       233 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~-gw~~~f~i~~~~~~~~~~~  311 (440)
                      -.+.|.+.+..++..++++.+.+|++. +..+++|+....   +|..+++.+...+.++. |||.....-+.++++.+++
T Consensus       106 t~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~---~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~  181 (395)
T COG2807         106 TLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLG---AGAALAAALAVPLAQHSGGWRGALGFWALLALLALLI  181 (395)
T ss_pred             HHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHH---HHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999998875 678899998888   99999999999998877 7999999989888888776


Q ss_pred             heeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccccccceeeeeeeccCCCChhhH
Q 013568          312 AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFL  391 (440)
Q Consensus       312 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~  391 (440)
                      ++.-..+++ .+..+               ...++...++|+|..|.+.+|+-+....+.....+..-+..+.|+|+.++
T Consensus       182 WlPq~~r~~-~~~~~---------------~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~a  245 (395)
T COG2807         182 WLPQALREQ-AASIA---------------TKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEA  245 (395)
T ss_pred             Hhhhccccc-ccccc---------------cccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHh
Confidence            663321111 11100               01111234678999999998887755533333333221225789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhhhh
Q 013568          392 GRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQ  436 (440)
Q Consensus       392 g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~~~  436 (440)
                      |.......+..+...+..+.+.+|.+.++.+.+...++...+++-
T Consensus       246 G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G  290 (395)
T COG2807         246 GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVG  290 (395)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999988766665555555554444443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.62  E-value=3.1e-14  Score=142.81  Aligned_cols=255  Identities=16%  Similarity=0.179  Sum_probs=177.9

Q ss_pred             HHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHH
Q 013568          154 AVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALS  232 (440)
Q Consensus       154 ~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (440)
                      .+-..++++++.+..+++|+.++....+.+ +|+.+.+.||   +|  .|.+.+++.++..+++++.. ++++.+.+++.
T Consensus        67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r---fg--~R~v~i~G~~v~~~g~~lss-F~~~i~~l~lt  140 (509)
T KOG2504|consen   67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR---FG--CRTVMIAGGLVAALGLLLSS-FATSLWQLYLT  140 (509)
T ss_pred             hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh---cC--chHHHHHHHHHHHHHHHHHH-HHhhHHHHHHH
Confidence            334455666899999999999888776666 9999999999   55  88889999889989888777 67777666554


Q ss_pred             H-HHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHh
Q 013568          233 I-LLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGV  311 (440)
Q Consensus       233 ~-~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~  311 (440)
                      . ++.|+|.++........+..++++ +|+.+.++...+.+   +|.++-|.+..++.+.+|||+.+++.+.+.+-.++.
T Consensus       141 ~gvi~G~G~~~~~~paiviv~~YF~k-kR~lA~Gia~~GsG---~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~  216 (509)
T KOG2504|consen  141 FGVIGGLGLGLIYLPAVVILGTYFEK-KRALATGIAVSGTG---VGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVA  216 (509)
T ss_pred             HHHHhhccchhhhcchhhhhhhHhHH-HHHHHHhhhhccCC---cceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            4 899999999888888888867654 67889888888888   999999999999999999999999998887666554


Q ss_pred             heeecc-ccccCCC---------------------cC--CCCC-C-----------CCCccchhhHHHHHH---HHHHhc
Q 013568          312 AVLVKE-QQVLGPS---------------------RR--QNLP-L-----------GDPSFFESSKQNMFQ---LWEAVK  352 (440)
Q Consensus       312 ~~~~~e-~~~~~~~---------------------~~--~~~~-~-----------~~~~~~~~~~~~~~~---~~~~l~  352 (440)
                      ...+++ .+...+.                     ..  +... .           +.+...+........   -.++++
T Consensus       217 ~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~  296 (509)
T KOG2504|consen  217 GALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLK  296 (509)
T ss_pred             HHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHc
Confidence            443333 1110000                     00  0000 0           000000000011111   146788


Q ss_pred             CcchhhhHHHHHhhhccccccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 013568          353 QPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPL  418 (440)
Q Consensus       353 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~  418 (440)
                      +|.++.+.+...+....+........-+.+.+|++..+++.+..+.++..++|.++.|++.|+...
T Consensus       297 ~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~  362 (509)
T KOG2504|consen  297 DPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGI  362 (509)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcccc
Confidence            988777766555544421111111111225789999999999999999999999999999999873

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.62  E-value=1.2e-14  Score=148.47  Aligned_cols=261  Identities=15%  Similarity=0.060  Sum_probs=176.7

Q ss_pred             HhcCCChhhhHHHHHhhhhhHHHHh-hhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q 013568          161 DDLHLDPAETAVISGFSSLPWLIKP-LYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLS  239 (440)
Q Consensus       161 ~~~g~s~~~~g~~~s~~~l~~~~~~-~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  239 (440)
                      +.++.+.....+..+++.++..+++ ++|+++||   +|  ||++++++.++..++.++.+ ++++++.++++|++.|++
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~---~G--Rk~~~~~~~~~~~i~~~~~a-~a~~~~~~~~~Rfl~G~~  184 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR---FG--RKPVLLVSLLLFIIFGILTA-FAPNYWMFLIFRFLSGFF  184 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh---cc--cHHHHHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhh
Confidence            4467788888889999999999965 66999999   56  99999999999999888877 899999999999999999


Q ss_pred             HHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhheeecccc
Q 013568          240 VAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQ  319 (440)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~  319 (440)
                      .+.......+++.|+.+++.|+.+..+ .....   .++.+++..++++..  +||+.+++..+..++.++.+++.+|++
T Consensus       185 ~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~---~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~  258 (521)
T KOG0255|consen  185 GSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFF---VGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESP  258 (521)
T ss_pred             ccchhHHhHhhheeecCcchhhHHHHH-HHHHH---HHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcCh
Confidence            999999999999999999999998888 55555   788899999998887  899999999998888777777777887


Q ss_pred             ccCCCcCCCCC----------C--CCCccchhhHHH--H-----------HHHHHHhcCcchhhhHHHHHhhhcc-cccc
Q 013568          320 VLGPSRRQNLP----------L--GDPSFFESSKQN--M-----------FQLWEAVKQPNVFLPTLFVFLWQAT-PHSD  373 (440)
Q Consensus       320 ~~~~~~~~~~~----------~--~~~~~~~~~~~~--~-----------~~~~~~l~~~~~~~~~l~~~~~~~~-~~~~  373 (440)
                      +....+.+.++          .  ++....+.....  .           .....+++.|++....++..+.... ....
T Consensus       259 rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y  338 (521)
T KOG0255|consen  259 RWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVY  338 (521)
T ss_pred             HHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHH
Confidence            64222111100          0  000000000000  0           0123344444333333322221110 0000


Q ss_pred             ceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhhhhh
Q 013568          374 SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQV  437 (440)
Q Consensus       374 ~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~~~l  437 (440)
                      ....+ ....+|.+.   .......+.....+....+...++.|||.....+.++..+..+...
T Consensus       339 ~gl~~-~~~~lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~  398 (521)
T KOG0255|consen  339 YGLSL-NVSGLGGNI---YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFG  398 (521)
T ss_pred             Hhhhh-hhhhcCchH---HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            00001 112334332   3344444456777777778889999999988888777666655443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.58  E-value=4.8e-13  Score=133.26  Aligned_cols=171  Identities=18%  Similarity=0.162  Sum_probs=124.3

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .++.++...+...+. +.....++.|+++++|++..+.+.+.+.+.....+ .+++|+++||+  .|  ||+.++++.++
T Consensus        10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRi--lG--rrr~iliG~il   85 (493)
T PRK15462         10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKV--LG--NRMAVMLGALL   85 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cC--cHHHHHHHHHH
Confidence            455555555655555 56777899999888999999999998888877666 66889999994  36  77777788777


Q ss_pred             HHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccc--ccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          212 GALSWSLMATIVE-SKYSAALSILLGSLSVAFSDVVVDSMVVERARGE--SQSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       212 ~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      ..++.++++ ... +...+.+...+.++|.+...+...+++.|.+|++  +|..+.++..   ...++|+.++|.+.+++
T Consensus        86 ~~lg~lll~-~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y---~~~nlG~~iap~l~g~L  161 (493)
T PRK15462         86 MAIGHVVLG-ASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMY---AAGNVGSIIAPIACGYA  161 (493)
T ss_pred             HHHHHHHHH-HhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHH---HHHHHHHHHHHHHHHHH
Confidence            777766555 322 2223344444555666766677788999999876  4665555544   44559999999999999


Q ss_pred             hhccchHHHHHHHHHHHHHHHHhh
Q 013568          289 VDAYGVRFVFGVTALLPLITSGVA  312 (440)
Q Consensus       289 ~~~~gw~~~f~i~~~~~~~~~~~~  312 (440)
                      .+.+||++.|.+.++..+++++.+
T Consensus       162 ~~~~Gw~~~F~iaaigm~l~li~~  185 (493)
T PRK15462        162 QEEYSWAMGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             HhhhChHHHHHHHHHHHHHHHHHH
Confidence            999999999999776555544433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.58  E-value=5.8e-13  Score=132.85  Aligned_cols=255  Identities=21%  Similarity=0.271  Sum_probs=168.2

Q ss_pred             HHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHhhhhhhh
Q 013568          171 AVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIV-ESKYSAALSILLGSLSVAFSDVVVD  248 (440)
Q Consensus       171 g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~  248 (440)
                      ++..++..+..++ .|+.|.++|+   .| +||+++.+...+..++..++.+.. ++++...+..++..++.+......+
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~---~~-~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn  148 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADY---GG-RRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN  148 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcc---cc-cchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555 8899999997   34 777777777777777766666443 3444455666777788888999999


Q ss_pred             HHHHhhhcccccc--c---------------------chhhhHHhhhhhhhHHHHHHHHHHHhhh--------ccchHHH
Q 013568          249 SMVVERARGESQS--V---------------------SGSLQSLCWGSSAFGGIVSSYFSGSMVD--------AYGVRFV  297 (440)
Q Consensus       249 ~~~~~~~~~~~r~--~---------------------~~~~~~~~~~~~~~g~~ig~~i~g~l~~--------~~gw~~~  297 (440)
                      +++.|+.+++++-  .                     ...+.+.++..+++|+++.-++.-.+..        ..+-|..
T Consensus       149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~  228 (477)
T PF11700_consen  149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA  228 (477)
T ss_pred             HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence            9999999998771  0                     0245556667677888887776665532        1235888


Q ss_pred             HHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccc-ccce
Q 013568          298 FGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH-SDSA  375 (440)
Q Consensus       298 f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~  375 (440)
                      +.+.++..++..+ ..+++||.+.++......     .......++..+.+++..+.|.+..+++..++|.-... ....
T Consensus       229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~-----~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~  303 (477)
T PF11700_consen  229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGS-----SYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISF  303 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcch-----hHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877666655 556777776532111110     00112223333344445566777777666666554222 2222


Q ss_pred             eeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCch--hHHHHHHHHHHHHhh
Q 013568          376 MFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLR--KIFLANTIFGTALGM  434 (440)
Q Consensus       376 ~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r--~~l~~~~~~~~~~~~  434 (440)
                      ...|..+++|++..+...+.....+..++|.++++++.||+|.|  +.++.+.++..++.+
T Consensus       304 ~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~  364 (477)
T PF11700_consen  304 AGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL  364 (477)
T ss_pred             HHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            23444578999999999999999999999999999999999998  777776666544443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.54  E-value=4.7e-17  Score=163.12  Aligned_cols=255  Identities=16%  Similarity=0.250  Sum_probs=167.2

Q ss_pred             hhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhc---hhHHHHHHHHHHHHHHHhhh
Q 013568          169 ETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVE---SKYSAALSILLGSLSVAFSD  244 (440)
Q Consensus       169 ~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~  244 (440)
                      +.+++.+...++..+ .+++|.++||   +|  ||+.++++.++..++.++.+ +++   +...+.++|++.|++.|...
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~---~G--Rk~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~R~~~G~~~g~~~  120 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADR---YG--RKPALIISALLMIIGSILIA-FAPSYNNFWMLLIGRFLIGFGIGGAY  120 (451)
T ss_pred             HHHHHHHHHHhhhccccccccccccc---cc--cccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence            467788888888888 6788999999   56  77888888888888887777 677   88999999999999999999


Q ss_pred             hhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc---cchHHHHHHHHHHHHHHHHhheeecccccc
Q 013568          245 VVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA---YGVRFVFGVTALLPLITSGVAVLVKEQQVL  321 (440)
Q Consensus       245 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~---~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~  321 (440)
                      +....++.|..|++.|++...+.+..+.   +|.+++..++-.+...   .+||+.+++.++..++..+..+++||+|+.
T Consensus       121 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~---~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~w  197 (451)
T PF00083_consen  121 VVSPIYISEIAPPKHRGFLSSLFQLFWA---LGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRW  197 (451)
T ss_pred             cccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccce
Confidence            9999999999999999999998888877   8888877766544332   459999999998887777777899999865


Q ss_pred             CCCcCCCC-------CCCCCc----cchhhHHHH-------HHHHHHhcCcc----hhhhHHHHHhhhccccccceeeee
Q 013568          322 GPSRRQNL-------PLGDPS----FFESSKQNM-------FQLWEAVKQPN----VFLPTLFVFLWQATPHSDSAMFYF  379 (440)
Q Consensus       322 ~~~~~~~~-------~~~~~~----~~~~~~~~~-------~~~~~~l~~~~----~~~~~l~~~~~~~~~~~~~~~~~~  379 (440)
                      -..+.+.+       +.++++    ..++..+..       ....++++++.    +...+....+....  +.....++
T Consensus       198 L~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~--g~~~~~~~  275 (451)
T PF00083_consen  198 LLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFS--GINFIFYY  275 (451)
T ss_pred             ecccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccc--cccccccc
Confidence            22111110       000000    000000000       11223344432    11111111111111  11112222


Q ss_pred             ee---ccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhhhh
Q 013568          380 TT---NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQ  436 (440)
Q Consensus       380 ~~---~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~~~  436 (440)
                      ..   +..|.+..  -.......+..+++.+++.++.||+|||++++.+..+++++.+..
T Consensus       276 ~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~  333 (451)
T PF00083_consen  276 SPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLIL  333 (451)
T ss_pred             ccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            21   44565555  223344555666777777899999999999988877766655443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR01272 gluP glucose/galactose transporter

Probab=99.53  E-value=8.4e-14  Score=132.16  Aligned_cols=196  Identities=13%  Similarity=0.098  Sum_probs=143.5

Q ss_pred             hhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc----------
Q 013568          222 IVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA----------  291 (440)
Q Consensus       222 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~----------  291 (440)
                      ...++...++..++.|.|.+...+..+.+++++.++|++++++.+.+.+++   +|.++||++++.+...          
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~---~G~~~gP~i~~~~i~~~~~~~~~~~~   82 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNK---LGTTVAPLFGGSLILSGAGDLSMQVA   82 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhh---hHHHHHHHHHHHHHhcCCcchhhhhh
Confidence            346788889999999999999999999999999999999999999998988   9999999999987731          


Q ss_pred             ------cchHHHHHHHHHHHHHHHHhheee--ccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHH
Q 013568          292 ------YGVRFVFGVTALLPLITSGVAVLV--KEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFV  363 (440)
Q Consensus       292 ------~gw~~~f~i~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~  363 (440)
                            ..|+++|++.+++.++..+.+.+.  ||.+.+  +.++...          ++. .+.++.+++|.++...+..
T Consensus        83 ~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~--~~~~~~~----------~~~-~~~~~~~~~~~~~l~~~~~  149 (310)
T TIGR01272        83 TANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEA--DVARVSS----------GDT-TQKTSAFQFTHLVLGALGI  149 (310)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcc--ccccccc----------ccc-cchhhHHhhHHHHHHHHHH
Confidence                  479999997776655555544443  442221  1111000          000 0112356677777777777


Q ss_pred             Hhhhcccccccee-eeeee--ccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013568          364 FLWQATPHSDSAM-FYFTT--NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALG  433 (440)
Q Consensus       364 ~~~~~~~~~~~~~-~~~~~--~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~  433 (440)
                      ++|...+.....+ ..|..  +.+|+++.+.+.......++.++|+++++++.||++.|+.+.++.+++++..
T Consensus       150 f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~  222 (310)
T TIGR01272       150 FVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLS  222 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            7777644333333 23333  2479999999999999999999999999999999999998877766655544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.51  E-value=1.4e-13  Score=129.82  Aligned_cols=177  Identities=16%  Similarity=0.099  Sum_probs=145.2

Q ss_pred             ccCCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhh
Q 013568          129 VDLSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLV  206 (440)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~  206 (440)
                      ...++.+|.+++.++...+. ..+..|.|.|+.|..|+|...+++..+++-++... ..++||+|||+  +++||.+.-+
T Consensus       248 VL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDkl--fkgrR~p~~~  325 (448)
T COG2271         248 VLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKL--FKGRRGPMAL  325 (448)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cccccchHHH
Confidence            34567789999999888876 78888999999999999999999999999998888 55779999997  6437777777


Q ss_pred             HHHHHHHHHHHHHHhhhch--hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhh-HHHHHHH
Q 013568          207 LSGLLGALSWSLMATIVES--KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAF-GGIVSSY  283 (440)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-g~~ig~~  283 (440)
                      +..++..++.+... ..++  .....++.++.|+..-...........|..|++.-|.+.++.+.+..   + |...+..
T Consensus       326 i~~~~i~~~~~~~w-~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Y---l~Ga~~a~~  401 (448)
T COG2271         326 IFMLLITASLVLYW-LAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAY---LIGAALAGL  401 (448)
T ss_pred             HHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHH---HhhHHhcCC
Confidence            77777766665555 4443  46677888888988888778888899999999999999988876655   6 8888888


Q ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHHh
Q 013568          284 FSGSMVDAYGVRFVFGVTALLPLITSGV  311 (440)
Q Consensus       284 i~g~l~~~~gw~~~f~i~~~~~~~~~~~  311 (440)
                      ..|++.+.+||...|++..+.++++.++
T Consensus       402 ~~g~i~d~~gW~g~Fi~~~~~a~l~~ll  429 (448)
T COG2271         402 PLGYIADTWGWDGGFIVLSIAALLAILL  429 (448)
T ss_pred             cceeeEecCCCcchHHHHHHHHHHHHHH
Confidence            8999989899999999888777766553

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.47  E-value=4.7e-12  Score=124.67  Aligned_cols=159  Identities=14%  Similarity=0.195  Sum_probs=119.5

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY  227 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~  227 (440)
                      ..+..++|.|+++++|++..+.+++.+...+...+ .+++|+++||   +|  ||+.+..+.+...+....+. ..++.+
T Consensus       233 ~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr---~g--~~~~~~~~~~~~~~~~~~~~-~~~~~~  306 (393)
T PRK15011        233 SLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR---LG--KRFLMRVAAVAGVCFYAGML-MAHSPA  306 (393)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--hHHHHHHHHHHHHHHHHHHH-HHhhHH
Confidence            44556788899888999999999887766555555 6788999999   45  55555555444444433333 455666


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      ..++.+++.+++.+...+....+..|..|+ +++++.++++....   +|..+|+.++|++.+++||+..|++.+++.++
T Consensus       307 ~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~---lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~  382 (393)
T PRK15011        307 ILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSR---VGWIIAGSLAGIVAEIWNYHAVFWFALVMIIA  382 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            667777888887777666777788898875 47888888776655   99999999999999999999999998888888


Q ss_pred             HHHhheeecc
Q 013568          308 TSGVAVLVKE  317 (440)
Q Consensus       308 ~~~~~~~~~e  317 (440)
                      .++..+++||
T Consensus       383 ~~~~~~~~~~  392 (393)
T PRK15011        383 TLFCLLRIKD  392 (393)
T ss_pred             HHHHHHhhcC
Confidence            7777776664

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.47  E-value=1.1e-11  Score=119.90  Aligned_cols=178  Identities=17%  Similarity=0.218  Sum_probs=140.5

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcC----CChhhhHHHHHhh-hhhHHHHhhhhhhccccCcCCCCcchhhhH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLH----LDPAETAVISGFS-SLPWLIKPLYGFISDSLPLFGYRRRSYLVL  207 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g----~s~~~~g~~~s~~-~l~~~~~~~~g~l~Dr~~~~G~~rr~~l~~  207 (440)
                      .++.+...-+..-++ +.+...+..|+..+++    +|.+++.-+++.+ .+.|....++||++||+  +|  +|+.+++
T Consensus        22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~--LG--~~~tI~l   97 (498)
T COG3104          22 GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRV--LG--TRRTIVL   97 (498)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHh--cc--hhHHHHH
Confidence            566667666766666 5666677777776667    9998877666665 46666667889999997  88  6677888


Q ss_pred             HHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHH
Q 013568          208 SGLLGALSWSLMATIV-ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG  286 (440)
Q Consensus       208 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g  286 (440)
                      +.++++++.++++... .....+.+...+.++|.|..-+....++.|.+|+++.- +-+-++..+.+.|+|++++|++.+
T Consensus        98 Gail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr-rD~gFt~fY~~iNiGsl~~p~i~~  176 (498)
T COG3104          98 GAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR-RDGGFTLFYMGINIGSLIAPIITG  176 (498)
T ss_pred             HHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc-cCCCccEEEEEeehHHHHHHHHHH
Confidence            8899999999888332 45677788888888999999999999999999886532 445566666777799999999999


Q ss_pred             HhhhccchHHHHHHHHHHHHHHHHhheeec
Q 013568          287 SMVDAYGVRFVFGVTALLPLITSGVAVLVK  316 (440)
Q Consensus       287 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~  316 (440)
                      ++.+++||+..|.+.++-..++++.+++.+
T Consensus       177 ~~~~~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         177 LLAINYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999988888777665544

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.45  E-value=2.3e-12  Score=118.99  Aligned_cols=162  Identities=14%  Similarity=0.143  Sum_probs=129.2

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY  227 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~  227 (440)
                      ......+.+-+....|.+..+..++......++.+ ...||..+|+   .|  ||+-..+......+..++-+ ..+++.
T Consensus        94 ~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~---~g--rr~~f~~T~l~t~v~~~is~-~spnf~  167 (528)
T KOG0253|consen   94 MMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT---IG--RRKGFNLTFLVTGVFGVISG-ASPNFA  167 (528)
T ss_pred             HHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh---hh--cchhhhhhHHHHHHHHHhhc-CCCCee
Confidence            45555566667777888999999999999999988 6799999999   46  45445555445545544445 678999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      .+.+.|.+.|+|.|. .+...++-.|..|..+|..-+-+. ..+.   +|.++...+.-.++.++||||.....+....+
T Consensus       168 ~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~wa---ig~v~ea~law~vm~~~gwr~~l~~~~~pl~~  242 (528)
T KOG0253|consen  168 SLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWA---IGQVFEALLAWGVMSNFGWRYLLFTSSTPLMF  242 (528)
T ss_pred             hhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH
Confidence            999999999999999 778888899999999988776655 6667   99999999998888999999999888876666


Q ss_pred             HHHhheeecccccc
Q 013568          308 TSGVAVLVKEQQVL  321 (440)
Q Consensus       308 ~~~~~~~~~e~~~~  321 (440)
                      .+...++++|+++.
T Consensus       243 ~a~f~~w~~ESpRf  256 (528)
T KOG0253|consen  243 AARFLVWVYESPRF  256 (528)
T ss_pred             HHHHHhhcccCcch
Confidence            77778889998753

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.44  E-value=2.4e-12  Score=129.72  Aligned_cols=177  Identities=15%  Similarity=0.123  Sum_probs=122.8

Q ss_pred             CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568          131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      .++.+|.+++.+++.... .....++|.|+++++|++..+.++..++..++..+ .+++|+++||+   | +||. ++..
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~---g-~r~~-~~~~  330 (467)
T PRK09556        256 KNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA---N-GRRA-LVAC  330 (467)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C-CCch-HHHH
Confidence            345677777776665554 45677899999988999999999988888888777 78899999994   5 4443 3333


Q ss_pred             HHHHHHHHHHHH-hhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhh-HHHHHHHHHH
Q 013568          209 GLLGALSWSLMA-TIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAF-GGIVSSYFSG  286 (440)
Q Consensus       209 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-g~~ig~~i~g  286 (440)
                      ..+..++...+. ...++...+.+++++.|++.............|.+|++.++.+.++.+....   + |..++|.+.|
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~---l~g~~~~~~~~G  407 (467)
T PRK09556        331 IALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAY---LFGDSFAKVGLG  407 (467)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHH---HHhHHHHhhhHH
Confidence            222222221111 1234554555666777755433333344667799999999998888765544   5 7799999999


Q ss_pred             Hhhh------------ccchHHHHHHHHHHHHHHHHhheee
Q 013568          287 SMVD------------AYGVRFVFGVTALLPLITSGVAVLV  315 (440)
Q Consensus       287 ~l~~------------~~gw~~~f~i~~~~~~~~~~~~~~~  315 (440)
                      ++.+            ..||+..|++.+++.+++++..+++
T Consensus       408 ~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        408 MIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             HHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence            9998            5789999999887777766654433

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.44  E-value=4e-13  Score=127.57  Aligned_cols=177  Identities=13%  Similarity=0.130  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHh-hhHHHHHHHHHHHhcC-------CChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhH
Q 013568          137 AVAMVYFVQGVL-GLARLAVNFYLKDDLH-------LDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVL  207 (440)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~g-------~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~  207 (440)
                      +..+++|..+++ ..+....+.+-.-++|       ++....+.+..+..++.++ |.++|++.|+   +|  ||.++..
T Consensus        45 iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~---~G--RK~vYG~  119 (538)
T KOG0252|consen   45 IAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDK---FG--RKKVYGK  119 (538)
T ss_pred             HhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhh---hc--chhhhhH
Confidence            344555566665 3333333333233333       3455667777778888888 8899999999   56  8888888


Q ss_pred             HHHHHHHHHHHHHhhhc-------hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHH
Q 013568          208 SGLLGALSWSLMATIVE-------SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIV  280 (440)
Q Consensus       208 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~i  280 (440)
                      .++++.++.++++ ++.       -..++.+.|++.|+|.|.-+|...+..+|....+.||...+..-.+.+   .|...
T Consensus       120 ~liImIi~t~~~~-~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg---~Gila  195 (538)
T KOG0252|consen  120 ELIIMIICSALSG-LSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQG---FGILA  195 (538)
T ss_pred             HHHHHHHHHHHhc-cCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecc---hhHhh
Confidence            8888888887655 431       135678999999999999999999999999999999988776655555   55555


Q ss_pred             HHHHHHHhh---hc------------cchHHHHHHHHHHHHHHHHhheeeccccccC
Q 013568          281 SSYFSGSMV---DA------------YGVRFVFGVTALLPLITSGVAVLVKEQQVLG  322 (440)
Q Consensus       281 g~~i~g~l~---~~------------~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~  322 (440)
                      |.+++-.+.   ++            .=||..|.+.++.+++.+...+.+||+++..
T Consensus       196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~  252 (538)
T KOG0252|consen  196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYT  252 (538)
T ss_pred             ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHH
Confidence            544444332   11            1299999998888887777788899987643

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.43  E-value=7.4e-12  Score=118.50  Aligned_cols=270  Identities=19%  Similarity=0.207  Sum_probs=178.8

Q ss_pred             HHHHHHHHhcCC---Chh----hhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhc-
Q 013568          154 AVNFYLKDDLHL---DPA----ETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVE-  224 (440)
Q Consensus       154 ~l~~~l~~~~g~---s~~----~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~-  224 (440)
                      ..|+|+++..+.   ++.    ..+...++..+..++ .|+.|.++|.   .| .||+.+-+...+..++.+++.+..+ 
T Consensus        37 ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~---~g-~Rk~~~~~f~~i~i~~~~~L~~i~~~  112 (438)
T COG2270          37 IFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADY---PG-PRKKFFGFFTAIGIISTFLLWFIPPG  112 (438)
T ss_pred             hhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc---CC-CcchHHHHHHHHHHHHHHHHHHhCCC
Confidence            445555554333   332    344455555555444 8999999998   56 7888887777777777777774555 


Q ss_pred             -hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHH--hh------------
Q 013568          225 -SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS--MV------------  289 (440)
Q Consensus       225 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~--l~------------  289 (440)
                       ..+..++...+..++.....+..++++.++.++++-++.   .+.++..+++|+.+.-++.-.  +.            
T Consensus       113 s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~ri---S~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~  189 (438)
T COG2270         113 SYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRI---SGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLG  189 (438)
T ss_pred             chHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcc---cccccccccccchHHHHHHHHHHhcccccceeEEeec
Confidence             344556677888888889999999999999999877755   345566666777665544311  11            


Q ss_pred             ----hccchHHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHH
Q 013568          290 ----DAYGVRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF  364 (440)
Q Consensus       290 ----~~~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  364 (440)
                          +...-|..+.+.++..++..+ .++..++.+....+..       +...+..++.+..+++..+++.+..+++.-+
T Consensus       190 l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~-------~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~  262 (438)
T COG2270         190 LPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPP-------TALRNGFKELKSTFKEIRGRKNLVLFLIARF  262 (438)
T ss_pred             cCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccch-------HHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence                122357888888877777666 4556665543221110       1111234455555666667777777776666


Q ss_pred             hhhcccccccee-eeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhhhhh
Q 013568          365 LWQATPHSDSAM-FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQV  437 (440)
Q Consensus       365 ~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~~~l  437 (440)
                      +|+-.......+ -.|....+|++..+..++.....+..++|++++|++.+|+|.|++++.+.++..+.++..+
T Consensus       263 ~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~  336 (438)
T COG2270         263 FYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI  336 (438)
T ss_pred             HHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH
Confidence            665522111111 2333358999999999999999999999999999999999999998888877776665443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.43  E-value=1.3e-11  Score=120.30  Aligned_cols=159  Identities=15%  Similarity=0.220  Sum_probs=118.4

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY  227 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~  227 (440)
                      ......+|.++++++|.+..+.+++.+...+.... .++.|+++||   +|  ||+.+..+.++..+....+. ..++.+
T Consensus       216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r---~g--~~~~~~~~~~~~~~~~~~~~-~~~~~~  289 (375)
T TIGR00899       216 ILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR---FG--KRRLMLLAALAGVAFYTGLA-ADNSLW  289 (375)
T ss_pred             HHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH---hc--chhHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            34455678888887899999999877665544444 6788999999   45  56666665554444443333 445666


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      .+++..++.|++.+...+....+..|..|++ ++.+.++++....   +|..++|.++|.+.+..||+..|++.+++.++
T Consensus       290 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~  365 (375)
T TIGR00899       290 ALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGR---VGWIIAGSVGGILAERWSYHAVYWFAIVMLIV  365 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHH---HHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            6677778888888887778888888988764 5567777766655   99999999999999999999999999988887


Q ss_pred             HHHhheeecc
Q 013568          308 TSGVAVLVKE  317 (440)
Q Consensus       308 ~~~~~~~~~e  317 (440)
                      ..+..++++|
T Consensus       366 ~~~~~~~~~~  375 (375)
T TIGR00899       366 ALFCLLLIKD  375 (375)
T ss_pred             HHHHHheecC
Confidence            7776666654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PTZ00207 hypothetical protein; Provisional

Probab=99.42  E-value=2.1e-11  Score=123.63  Aligned_cols=154  Identities=16%  Similarity=0.109  Sum_probs=117.4

Q ss_pred             HHHHHHHHhcCCChhhhHHHHHhhhhhHHHHhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhh------chhH
Q 013568          154 AVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIV------ESKY  227 (440)
Q Consensus       154 ~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~------~~~~  227 (440)
                      ...+.+++++|++..+.+++.++......++++.|+++||   +|  +|++++++.++..++.++++ ++      .+.+
T Consensus        48 v~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr---~G--~R~vllig~ll~~iG~ll~a-la~~~~i~~s~~  121 (591)
T PTZ00207         48 LISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDY---LG--PRPIFVLSMTVFCLGTLLFA-LTFQEVIEGSVV  121 (591)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--cHHHHHHHHHHHHHHHHHHH-HHhcccccCcHH
Confidence            4444567779999999999876633222237788999999   45  88899999999988888877 44      5788


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHH-HHHHHHHhhhccchHHHHHHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIV-SSYFSGSMVDAYGVRFVFGVTALLPL  306 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~i-g~~i~g~l~~~~gw~~~f~i~~~~~~  306 (440)
                      .+.+.|++.|++.+...+.....+.+++| ++||++.++...+.+   +|.++ +++..+++.  .+|++.|++.+++.+
T Consensus       122 ~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~g---LGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~  195 (591)
T PTZ00207        122 RLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTG---LGSAILGSIQLAFFS--DNTSAYFFFLMSFAL  195 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHH---HHHHHHHHHHHHHHH--HhHHHHHHHHHHHHH
Confidence            88999999999999888888889999986 678999999888877   88865 555555443  468888888888777


Q ss_pred             HHHH-hheeecccc
Q 013568          307 ITSG-VAVLVKEQQ  319 (440)
Q Consensus       307 ~~~~-~~~~~~e~~  319 (440)
                      +..+ ..+++++++
T Consensus       196 vv~ll~~~~vr~p~  209 (591)
T PTZ00207        196 VVGILAIVFMRLPP  209 (591)
T ss_pred             HHHHHHHhheeCCc
Confidence            6655 344555543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.41  E-value=8.2e-12  Score=124.59  Aligned_cols=178  Identities=16%  Similarity=0.131  Sum_probs=116.9

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      ++.++.+.+.++..... .....++|.|+++++|++..+.++..+++.++..+ .++.|+++||+  .+.+|+.......
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~--~~~~r~~~~~~~~  319 (434)
T PRK11663        242 NPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL--FNGNRGPMNLIFA  319 (434)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh--ccCCccHHHHHHH
Confidence            34566665555554444 45667899999887899999999988888888777 77889999995  2212333322221


Q ss_pred             HHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          210 LLGALSWSLMATI-VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       210 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      +...+..+.+... ..+.....+..+..|++.............|.+++++|+...++.+....   +|.+++|.+.|++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~---~g~~~~p~~~g~l  396 (434)
T PRK11663        320 AGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAY---LGAALSGYPLAKV  396 (434)
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHH---HHHHHhcccHHHH
Confidence            1111111111111 12222233333444443332233344567899999999999888887776   9999999999999


Q ss_pred             hhccchHHHHHHHHHHHHHHHHhhee
Q 013568          289 VDAYGVRFVFGVTALLPLITSGVAVL  314 (440)
Q Consensus       289 ~~~~gw~~~f~i~~~~~~~~~~~~~~  314 (440)
                      .+++||+..|++.+++.++..+..++
T Consensus       397 ~~~~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        397 LEIWHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888777664443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.40  E-value=5.4e-12  Score=125.39  Aligned_cols=158  Identities=13%  Similarity=0.119  Sum_probs=118.0

Q ss_pred             HHHHHHHHHh---cCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHH
Q 013568          153 LAVNFYLKDD---LHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYS  228 (440)
Q Consensus       153 ~~l~~~l~~~---~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~  228 (440)
                      ...+.++.+.   .+.+..+.|++.++..+...+ .+++|+++||   +|  +|+.+..+.++..+...++. +.++.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr---~g--~~~~~~~~~~l~~~~~~l~~-~~~~~~~  317 (420)
T PRK09528        244 QQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR---IG--AKNALLLAGTIMAVRIIGSG-FATGPLE  317 (420)
T ss_pred             HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--cchhhHHHHHHHHHHHHHHH-hcccHHH
Confidence            3455555543   256777888888888877766 7888999999   45  56666666666666666666 5677777


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhh-hHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          229 AALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSL-QSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       229 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      +++++++.|++.+...+....++.+..|++.++...+. ++....   +|.++++.+.|++.+.+||+..|.+.+++.++
T Consensus       318 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i  394 (420)
T PRK09528        318 VSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQ---LGAVFLSTLAGNLYDSIGFQGTYLILGGIVLL  394 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHH---HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence            78888999998888777788899999998888766443 444445   99999999999999999999999998887766


Q ss_pred             HHHhh-eeecccc
Q 013568          308 TSGVA-VLVKEQQ  319 (440)
Q Consensus       308 ~~~~~-~~~~e~~  319 (440)
                      ..++. +++++++
T Consensus       395 ~~~~~~~~~~~~~  407 (420)
T PRK09528        395 FTLISVFTLSGDR  407 (420)
T ss_pred             HHHHHHHHhcCCc
Confidence            65543 3444433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.39  E-value=9.2e-12  Score=123.47  Aligned_cols=177  Identities=16%  Similarity=0.210  Sum_probs=127.3

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCCh--------hhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcch
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDP--------AETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRS  203 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~--------~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~  203 (440)
                      +++.+.+..++.... .......+.++++ .|.+.        ...+.+.++..+...+ .++.|+++||   +|  ||+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr---~g--~r~  282 (418)
T TIGR00889       209 RMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR---FG--IKK  282 (418)
T ss_pred             CeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---hC--cHH
Confidence            444444444443332 3444556777766 46543        5567777777777666 7788999999   45  777


Q ss_pred             hhhHHHHHHHHHHHHHHhhhc---hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhH-HhhhhhhhHHH
Q 013568          204 YLVLSGLLGALSWSLMATIVE---SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQS-LCWGSSAFGGI  279 (440)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~~g~~  279 (440)
                      .+..+.++..++...+.....   +...+++..++.|++.+...+....++.|.+|+++|++..++.+ ..+.   +|.+
T Consensus       283 ~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~---lg~~  359 (418)
T TIGR00889       283 VMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNG---FGSL  359 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh---hHHH
Confidence            888887777776655552222   23455677889999998888888899999999999999988886 4566   8999


Q ss_pred             HHHHHHHHhhhc------cchHHHHHHHHHHHHHHHH-hheeecccc
Q 013568          280 VSSYFSGSMVDA------YGVRFVFGVTALLPLITSG-VAVLVKEQQ  319 (440)
Q Consensus       280 ig~~i~g~l~~~------~gw~~~f~i~~~~~~~~~~-~~~~~~e~~  319 (440)
                      +||.++|++.++      +||+.+|.+.+++.++..+ ..++++|+.
T Consensus       360 iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       360 LGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999999999887      4699999998887777665 455667653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.37  E-value=1.6e-11  Score=119.46  Aligned_cols=167  Identities=16%  Similarity=0.164  Sum_probs=122.6

Q ss_pred             ccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      +.++.+...++..... .......+++.++ +|.+..+.+++.++..++..+ .++.|+++||+   |  ||+.+..+.+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~---g--~~~~~~~~~~  278 (377)
T TIGR00890       205 PQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI---G--RQKTMSIVFG  278 (377)
T ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h--hhhhhhHHHH
Confidence            3455555545444443 2334455666655 799998899888888888777 78889999994   4  6666767766


Q ss_pred             HHHHHHHHHHhhhchh--HHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          211 LGALSWSLMATIVESK--YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       211 ~~~~~~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      +..++.+.+. ..++.  ...++..++.+++.+...+....++.|.+|+++|++..++.+....   +|..++|.+.|.+
T Consensus       279 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~g~~~~~~~~g~l  354 (377)
T TIGR00890       279 ISAVGMAAML-FIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKA---VAGIFGGLIASHA  354 (377)
T ss_pred             HHHHHHHHHH-HcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHH---HHHHHHHHHHHHH
Confidence            6666655555 33322  2233456677777777777778899999999999999998887777   9999999999999


Q ss_pred             hhccchHHHHHHHHHHHHHHH
Q 013568          289 VDAYGVRFVFGVTALLPLITS  309 (440)
Q Consensus       289 ~~~~gw~~~f~i~~~~~~~~~  309 (440)
                      .+..||++.|.+.+++.++++
T Consensus       355 ~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       355 LTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HhhhchhhHHHHHHHHHHHhc
Confidence            999999999999887766543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.37  E-value=3.5e-11  Score=117.97  Aligned_cols=171  Identities=14%  Similarity=0.127  Sum_probs=134.2

Q ss_pred             CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568          131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      .+++++.+.+..++.... .....+.+.++++ +|.+..++|++.++..+...+ .++.+.+.||   +|  .|+.+.++
T Consensus       203 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r---~g--~~~~l~~~  276 (382)
T TIGR00902       203 KNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN---CS--ARDLLLIS  276 (382)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh---CC--HHHHHHHH
Confidence            345666655555544443 5666688899987 799999999987776666666 5677899998   45  77778888


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhH-HhhhhhhhHHHHHHHHHHH
Q 013568          209 GLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQS-LCWGSSAFGGIVSSYFSGS  287 (440)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~~g~~ig~~i~g~  287 (440)
                      .+...+.+..++ ..++.+.+++..++.|+..+...+....++.+. |++++++..++++ ...+   +|..+|+.++|+
T Consensus       277 ~~~~~~~~~~~~-~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g---~g~~~g~~~~G~  351 (382)
T TIGR00902       277 AIACVGRWAIIG-AIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMG---GLIAIFTAFAGF  351 (382)
T ss_pred             HHHHHHHHHHHH-hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            888888887777 678888888889999999999999999999988 8888887788775 4556   999999999999


Q ss_pred             hhhccchHHHHHHHHHHHHHHHHhhe
Q 013568          288 MVDAYGVRFVFGVTALLPLITSGVAV  313 (440)
Q Consensus       288 l~~~~gw~~~f~i~~~~~~~~~~~~~  313 (440)
                      +.+++|+ ..|++.+++.++++++..
T Consensus       352 l~~~~g~-~~~~~~~~~~~~~~~~~~  376 (382)
T TIGR00902       352 IYPTLGA-GTFVFMAIIAAAAFFLIP  376 (382)
T ss_pred             HHHhccH-HHHHHHHHHHHHHHHHHH
Confidence            9999986 668887777776655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.36  E-value=5.3e-10  Score=104.66  Aligned_cols=255  Identities=15%  Similarity=0.070  Sum_probs=150.0

Q ss_pred             HhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q 013568          161 DDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLS  239 (440)
Q Consensus       161 ~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  239 (440)
                      +++|++..+++.+.........+ +++.|.++||   +|  ||+..++..++..++++.-  ..+++..+++.|++.|++
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~---~G--rk~~cl~~cily~~scl~k--~~~~~~~L~~GRvlgGia  134 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR---YG--RKKACLLFCILYSLSCLTK--HSSNYPVLLLGRVLGGIA  134 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--chHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHH
Confidence            34899999999887776666655 9999999999   56  5555555555666665433  458899999999999999


Q ss_pred             HHhhhhhhhHHH-Hhhhccccc-ccchhhhHHhhhhhh-hHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHHhh-e
Q 013568          240 VAFSDVVVDSMV-VERARGESQ-SVSGSLQSLCWGSSA-FGGIVSSYFSGSMVDAYG--VRFVFGVTALLPLITSGVA-V  313 (440)
Q Consensus       240 ~~~~~~~~~~~~-~~~~~~~~r-~~~~~~~~~~~~~~~-~g~~ig~~i~g~l~~~~g--w~~~f~i~~~~~~~~~~~~-~  313 (440)
                      .+....+.-+++ .|....+.. ......+..+....| +-.+++.+++-++++..|  -..+|....++.+++.++. .
T Consensus       135 TSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~  214 (354)
T PF05631_consen  135 TSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILK  214 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHh
Confidence            999888888865 444222111 111222222211111 334445555555565554  4778888777776666644 4


Q ss_pred             eeccccccCCCcCCCCCCCCCccchhhHHHHHH-HHHHhcCcchhhhHHHHHhhhcc-ccccceeeeeeeccCCCChhhH
Q 013568          314 LVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ-LWEAVKQPNVFLPTLFVFLWQAT-PHSDSAMFYFTTNELGFTPEFL  391 (440)
Q Consensus       314 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~  391 (440)
                      ..+|+........            +.....++ ...+++||+++.+.+.-.++-.. +.+...+.... +..+ ...-.
T Consensus       215 ~W~ENyg~~~~~~------------~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL-~~~~-~~~P~  280 (354)
T PF05631_consen  215 TWPENYGDTSSSS------------SLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPAL-DPDD-EELPL  280 (354)
T ss_pred             cccccCCCccccc------------chHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeecee-cCCC-CCCCc
Confidence            5666643221111            12223333 33455789988877665554441 11111111111 2111 22346


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-cCCchhHHHHHHHHHHHHhhhh
Q 013568          392 GRVKFVTSVASLLGVGLYNGFLK-NVPLRKIFLANTIFGTALGMTQ  436 (440)
Q Consensus       392 g~~~~~~~i~~~~g~~~~~~l~~-r~g~r~~l~~~~~~~~~~~~~~  436 (440)
                      |+++..+.++.++|+.+..++.. +......+.....+.++...+.
T Consensus       281 GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~~l~~p  326 (354)
T PF05631_consen  281 GLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAVSLAIP  326 (354)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987664 4444455544444444443333

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.36  E-value=1.1e-11  Score=129.35  Aligned_cols=135  Identities=13%  Similarity=0.058  Sum_probs=106.3

Q ss_pred             hhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Q 013568          176 FSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVER  254 (440)
Q Consensus       176 ~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  254 (440)
                      +..++..+ .++.|+++||   +|  ||+.++++.++.+++.++++ +.++...+++++++.+++.+...+...++++|+
T Consensus       603 l~~l~~i~G~il~g~L~Dr---~G--Rr~~l~~~~~lsai~~ll~~-~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       603 LGTLAVLPGNIVSALLMDK---IG--RLRMLAGSMVLSCISCFFLS-FGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHH---hC--CHHHHHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555 5688999999   45  78888888888888777766 556666677777888888888888899999999


Q ss_pred             hcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhheeeccccc
Q 013568          255 ARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQV  320 (440)
Q Consensus       255 ~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~  320 (440)
                      +|.+.|+++.++......   +|.++||++++.+.+. +...+|++.+++.+++.++.+++||++.
T Consensus       677 ~Pt~~Rgta~Gi~~~~~r---lGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~~  738 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCK---AAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTRG  738 (742)
T ss_pred             cCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            999999999888887776   9999999999988764 4667788888777777676667787654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.36  E-value=4.4e-11  Score=121.27  Aligned_cols=164  Identities=14%  Similarity=0.097  Sum_probs=116.7

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHH-HHh-hhch
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSL-MAT-IVES  225 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~-~~~-~~~~  225 (440)
                      .....++|.++++.+|++..+.+++.....++..+ .++.|+++||   +|  ||+.++.+.++..++.+. +.. ..++
T Consensus       267 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr---~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~  341 (490)
T PRK10642        267 YMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR---FG--RRPFVILGSVALFVLAIPAFILINSNV  341 (490)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--cHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            45666899999887899988877777677777666 7788999999   45  666666655433322222 211 2334


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhh-hHHhhhhhhhHHHHHHHHHHHhhhcc-chHHHHHHHHH
Q 013568          226 KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSL-QSLCWGSSAFGGIVSSYFSGSMVDAY-GVRFVFGVTAL  303 (440)
Q Consensus       226 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~~~g~~ig~~i~g~l~~~~-gw~~~f~i~~~  303 (440)
                      ...+++++++.|++.+........++.|++|++.|+.+.++ ++.+.    +++.++|.+.+++.+.. +|+..+++..+
T Consensus       342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~----~~g~~~p~i~g~l~~~~~~~~~~~~~~~~  417 (490)
T PRK10642        342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISV----LVAGLTPTLAAWLVESTQNLMMPAYYLMV  417 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence            55667778888887777667778888999999999987775 44433    56788999999888755 47777777776


Q ss_pred             HHHHHHHhheeecccccc
Q 013568          304 LPLITSGVAVLVKEQQVL  321 (440)
Q Consensus       304 ~~~~~~~~~~~~~e~~~~  321 (440)
                      .+++.++..+++||++..
T Consensus       418 ~~~i~~~~~~~~pes~~~  435 (490)
T PRK10642        418 VAVIGLITGVTMKETANR  435 (490)
T ss_pred             HHHHHHHHHHHhccccCC
Confidence            666666666677998764

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.35  E-value=9.6e-11  Score=111.63  Aligned_cols=262  Identities=13%  Similarity=0.068  Sum_probs=159.2

Q ss_pred             HHHHHhhhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHh
Q 013568          143 FVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMAT  221 (440)
Q Consensus       143 ~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~  221 (440)
                      +.+++..+....+..+.++.|| +...+-|...++.+.+.. +..+-|+.|+   +|  -|...+++..+..++..+=..
T Consensus        55 ~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk---~G--LR~a~llgt~ln~iGa~Ir~i  128 (480)
T KOG2563|consen   55 FSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK---FG--LRTALLLGTVLNGIGAWIRLI  128 (480)
T ss_pred             hcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc---cc--hHHHHHHHHHHHHHHHHHhhh
Confidence            3344445666677778888888 666677777778777766 8888999999   56  566666666666666544331


Q ss_pred             hhc-----hhH--HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc---
Q 013568          222 IVE-----SKY--SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA---  291 (440)
Q Consensus       222 ~~~-----~~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~---  291 (440)
                      ...     .++  ....+-.+.+.+.-+....-.-+..-|+++++|..+..+-.+++-   +|..+|.++...++.+   
T Consensus       129 ss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~---LGvavg~llppilV~~~~~  205 (480)
T KOG2563|consen  129 SSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNP---LGVAVGFLLPPILVPSSKD  205 (480)
T ss_pred             ccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcch---HHHHHHhhccceecCCCCC
Confidence            222     222  334555555555555555555667779999999998888777777   7888877777766643   


Q ss_pred             ---cchHH--HHHHHHHHHHHHHHh-heeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHh
Q 013568          292 ---YGVRF--VFGVTALLPLITSGV-AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFL  365 (440)
Q Consensus       292 ---~gw~~--~f~i~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~  365 (440)
                         ..|..  .|+..+++..+.++. .+..+++|+.++...+..        +......+.+++.++|+++....+   +
T Consensus       206 ~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~--------~~~~~f~~si~~~~~n~~F~il~~---~  274 (480)
T KOG2563|consen  206 SEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAA--------LQDASFPKSIKSCFKNRQFIILAI---C  274 (480)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhh--------hhcCcHHHHHHHHHcCccHHHHHH---H
Confidence               34654  355455544444332 233334333222221110        011235567888899988655432   2


Q ss_pred             hhccccccceeeeeee---ccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHH
Q 013568          366 WQATPHSDSAMFYFTT---NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLA  424 (440)
Q Consensus       366 ~~~~~~~~~~~~~~~~---~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~  424 (440)
                      |.+..+.....+..+.   ..-|++....|+......+++++|+.+.|.+.||.++-+....
T Consensus       275 ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~  336 (480)
T KOG2563|consen  275 YGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTL  336 (480)
T ss_pred             HhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            2221111112211111   2345666788999999999999999999999999876444333

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.35  E-value=4.8e-11  Score=118.46  Aligned_cols=163  Identities=14%  Similarity=0.096  Sum_probs=126.2

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY  227 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~  227 (440)
                      .....++|.|+++.+|.+..+.|++.+...++..+ .++.+++.||.     ++++.+..+.++..++.+.+. ..++..
T Consensus       240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-----~~~~~l~~~~~~~~~~~~~~~-~~~~~~  313 (417)
T PRK10489        240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-----RPGLLMLLSTLGSFLAVGLFG-LMPMWI  313 (417)
T ss_pred             HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-----CcchHHHHHHHHHHHHHHHHH-ccchHH
Confidence            34455788888887899999999998888888777 67789999972     355566666666666655555 556666


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      ...++.++.|++.+...+...+++.|..|++.|++..+++.....   +|..+|+.+.|++.+.+|++..+++.+++.++
T Consensus       314 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~---~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~  390 (417)
T PRK10489        314 LAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNV---TGDAIGAALLGGLGAMMTPVASASASGFGLLI  390 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh---hhHhHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence            667778888888888777888899999999999999998887666   99999999999999999999888887766655


Q ss_pred             HHH-hheeeccccc
Q 013568          308 TSG-VAVLVKEQQV  320 (440)
Q Consensus       308 ~~~-~~~~~~e~~~  320 (440)
                      ..+ ..+.+++.+.
T Consensus       391 ~~~~~~~~~~~~~~  404 (417)
T PRK10489        391 IGVLLLLVLGELRR  404 (417)
T ss_pred             HHHHHHHhcccccc
Confidence            444 4555666543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.35  E-value=3e-11  Score=116.17  Aligned_cols=169  Identities=25%  Similarity=0.344  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcch-hhhHHHHHHHH
Q 013568          138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRS-YLVLSGLLGAL  214 (440)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~-~l~~~~~~~~~  214 (440)
                      ..+..+..... .......+.+.++.+|.+..+.+++.+...++..+ .+++|++.||+   |  ||+ .+..+..+..+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~--~~~~~~~~~~~~~~i  254 (352)
T cd06174         180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL---G--RRRLLLLIGLLLAAL  254 (352)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--hhhHHHHHHHHHHHH
Confidence            33334444443 46667788888887799999999998888888877 78889999994   4  666 77777777777


Q ss_pred             HHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccch
Q 013568          215 SWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGV  294 (440)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw  294 (440)
                      +.+.+. ..++.....+..++.|++.+...+....++.|..|+++|++..++.+....   +|..+++.+.|.+.+..+|
T Consensus       255 ~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~i~g~l~~~~~~  330 (352)
T cd06174         255 GLLLLA-LAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGS---LGGALGPLLAGLLLDTGGY  330 (352)
T ss_pred             HHHHHH-HhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccCc
Confidence            777666 556677788889999999999999999999999999999999999888777   9999999999999998999


Q ss_pred             HHHHHHHHHHHHHHHHhheee
Q 013568          295 RFVFGVTALLPLITSGVAVLV  315 (440)
Q Consensus       295 ~~~f~i~~~~~~~~~~~~~~~  315 (440)
                      ++.|++.+++.++..+..+++
T Consensus       331 ~~~~~~~~~~~~i~~i~~~~~  351 (352)
T cd06174         331 GGVFLILAALALLAALLLLLL  351 (352)
T ss_pred             chHHHHHHHHHHHHHHHheec
Confidence            999999999888877765543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.35  E-value=4.3e-11  Score=121.61  Aligned_cols=275  Identities=12%  Similarity=0.074  Sum_probs=192.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHH
Q 013568          135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA  213 (440)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~  213 (440)
                      +.++++.++.+++...+......-+++.|+++..+.|++.+.+-++..+ ..+..++.-|     ++|-+++-.+.++++
T Consensus        99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-----~HrPr~Ig~G~~~m~  173 (735)
T KOG3626|consen   99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-----GHRPRWIGIGLVLMG  173 (735)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-----cCccceeeechhHHH
Confidence            3356677788888744444444556777999999999999999999887 5577999888     367777888888888


Q ss_pred             HHHHHHHhhhc-------------------h---------------------------------hHHHHHHHHHHHHHHH
Q 013568          214 LSWSLMATIVE-------------------S---------------------------------KYSAALSILLGSLSVA  241 (440)
Q Consensus       214 ~~~~~~~~~~~-------------------~---------------------------------~~~~~~~~~l~g~~~~  241 (440)
                      ++.++.+ +.+                   +                                 +..++++.++.|+|..
T Consensus       174 lgsll~a-lPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T  252 (735)
T KOG3626|consen  174 LGSLLFA-LPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT  252 (735)
T ss_pred             HHHHHHh-ChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC
Confidence            8877766 320                   0                                 1134566688899999


Q ss_pred             hhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc------------------cc-hHHHHHHHH
Q 013568          242 FSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA------------------YG-VRFVFGVTA  302 (440)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~------------------~g-w~~~f~i~~  302 (440)
                      ...+....++=|-..+++-+...++...+..   +|+++|-++++++...                  .| |-..|++.+
T Consensus       253 pi~tlGisYiDDnvk~~~SplYlgi~~~~~~---lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g  329 (735)
T KOG3626|consen  253 PIFTLGISYIDDNVKKKNSPLYLGILYSMAI---LGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICG  329 (735)
T ss_pred             CCccCCCccccccccccCCcHHHHHHHHHHH---hhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHH
Confidence            9999999999999988887877777776666   9999999999987532                  12 666688888


Q ss_pred             HHHHHHHHhheeeccccccCCC----cCC----CC---CCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccc-
Q 013568          303 LLPLITSGVAVLVKEQQVLGPS----RRQ----NL---PLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP-  370 (440)
Q Consensus       303 ~~~~~~~~~~~~~~e~~~~~~~----~~~----~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~-  370 (440)
                      .+.++..+.++++|.+......    ++.    .+   ...+.++.+..++..+.++++++||.+...++...+..... 
T Consensus       330 ~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~  409 (735)
T KOG3626|consen  330 ALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAIT  409 (735)
T ss_pred             HHHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence            8888888877777765443211    000    00   01122333455666777889999998776665555544422 


Q ss_pred             cccceeeeeeeccCCCChhhHHHHHHHHHH-HHHHHHHHHHHhhccCCc
Q 013568          371 HSDSAMFYFTTNELGFTPEFLGRVKFVTSV-ASLLGVGLYNGFLKNVPL  418 (440)
Q Consensus       371 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i-~~~~g~~~~~~l~~r~g~  418 (440)
                      +....++-|..+++|.++..+..+....++ +..+|.+++|++++|+..
T Consensus       410 G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl  458 (735)
T KOG3626|consen  410 GYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKL  458 (735)
T ss_pred             hHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence            123333445557899999999888876666 677899999999998753

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.34  E-value=7e-12  Score=103.67  Aligned_cols=132  Identities=24%  Similarity=0.329  Sum_probs=106.6

Q ss_pred             hhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Q 013568          177 SSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERA  255 (440)
Q Consensus       177 ~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  255 (440)
                      +.++..+ +++.|++.||   +|  ||+.+..+..+..++.+.+. ..++.+...+.+++.|++.+...+....++.|..
T Consensus         7 ~~~~~~~~~~~~g~~~d~---~g--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   80 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDR---FG--RKPVLLVGLFIFVLSTAMFA-LSSNITVLIIARFLQGFGAAFALVAGAALIADIY   80 (141)
T ss_pred             ehhHHHHHHhhHHHHHhh---cc--hhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence            4455555 7888999999   44  66677777667767666665 5677788888999999999999999999999999


Q ss_pred             cccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhe-eecc
Q 013568          256 RGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAV-LVKE  317 (440)
Q Consensus       256 ~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~-~~~e  317 (440)
                      |+++|++..++......   +|..+++.+.+.+.+..+|++.|++.+++.++..+..+ +.||
T Consensus        81 ~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        81 PPEERGVALGLMSAGIA---LGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             ChhhhhHHHHHHHHhHH---HHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999998887777   99999999999999989999999998877776665443 4443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.34  E-value=2.3e-11  Score=118.89  Aligned_cols=173  Identities=23%  Similarity=0.271  Sum_probs=119.1

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      +++++.+.+..+..... .....+.+.++++++|.+..+.+++.+...++..+ .++.|+++||+   | +|+..+....
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~-~~~~~~~~~~  289 (399)
T TIGR00893       214 DRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL---L-RRGKSLVFAR  289 (399)
T ss_pred             CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---h-hcccchhHHH
Confidence            34566666666665555 56777889999888899999999988888887776 78889999994   4 3432222211


Q ss_pred             HHHHHH-----HHHHHh-hhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHH
Q 013568          210 LLGALS-----WSLMAT-IVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSY  283 (440)
Q Consensus       210 ~~~~~~-----~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~  283 (440)
                      ....++     ...... ..++....+....+.+++.+ ..+....++.|..|+++|++..++.+....   +|..++|.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~g~~~~~~  365 (399)
T TIGR00893       290 KTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGN---LGGIVGPI  365 (399)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHH---HhhhhhhH
Confidence            111111     111110 11233333333334444444 677889999999999999999988887777   99999999


Q ss_pred             HHHHhhhccc-hHHHHHHHHHHHHHHHHhh
Q 013568          284 FSGSMVDAYG-VRFVFGVTALLPLITSGVA  312 (440)
Q Consensus       284 i~g~l~~~~g-w~~~f~i~~~~~~~~~~~~  312 (440)
                      +.|++.+..| |++.|++.+++.++..+..
T Consensus       366 i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       366 VIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            9999999888 9999999888777665543

>PRK03699 putative transporter; Provisional

Probab=99.34  E-value=4.5e-11  Score=117.72  Aligned_cols=173  Identities=9%  Similarity=0.078  Sum_probs=122.1

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .++.+.+.+++.... .....++|.|+++++|++..+.+++.+++.++..+ .++.|+++||+   |  +|+.+.....+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~---~--~~~~l~~~~~~  280 (394)
T PRK03699        206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF---D--LQRILTVLAGL  280 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh---c--hhhHHHHHHHH
Confidence            455555555554444 45667999999888999999999998888888777 67889999994   4  55555555444


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc
Q 013568          212 GALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA  291 (440)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~  291 (440)
                      ..+...++. ..++...+.+..++.|++.+...+...++..+..+.+ ++...+.....   +++|..++|.+.|++.+.
T Consensus       281 ~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~---~~~g~~i~p~~~G~l~~~  355 (394)
T PRK03699        281 ALVLMYLFV-NTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTC---GTIGTMLTFVVTSPIVAH  355 (394)
T ss_pred             HHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHh---hhHHHHHHHHHHHHHHHH
Confidence            444444443 4455555566667788877777677777777766543 34444444433   349999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHhheeec
Q 013568          292 YGVRFVFGVTALLPLITSGVAVLVK  316 (440)
Q Consensus       292 ~gw~~~f~i~~~~~~~~~~~~~~~~  316 (440)
                      .||+..|++.+++.++..+....++
T Consensus       356 ~g~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        356 FGLQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             hCchhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999998888777766444444

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.33  E-value=3.7e-11  Score=117.66  Aligned_cols=164  Identities=21%  Similarity=0.174  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG  212 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~  212 (440)
                      ++......+..... .....++|.++++++|.+..+.+.+.+...++..+ .++.|+++||   +|  ||+.+.....+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr---~g--~~~~~~~~~~~~  295 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR---IG--RRPVLIIFTVLA  295 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--hHHHHHHHHHHH
Confidence            44444444444444 45667889999877899999999888888777776 7889999999   45  455444333222


Q ss_pred             -HHHHHHHHhh--hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhh-hHHhhhhhhhHHHHHHHHHHHh
Q 013568          213 -ALSWSLMATI--VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSL-QSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       213 -~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                       ..+...+...  .++.+...+..++.|++.+...+...+++.|.+|+++|+++.++ ++....   +|..++|.++|++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~g~~~~p~~~g~l  372 (394)
T TIGR00883       296 ALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGA---IFGGFAPYIAAAL  372 (394)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHH---HHhhHHHHHHHHH
Confidence             2221122112  23455556667888888888888899999999999999988886 344444   8889999999999


Q ss_pred             hhccc-hHHHHHHHHHHHH
Q 013568          289 VDAYG-VRFVFGVTALLPL  306 (440)
Q Consensus       289 ~~~~g-w~~~f~i~~~~~~  306 (440)
                      .++.| |++.++...+..+
T Consensus       373 ~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       373 VAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             HHHcCcchhHHHHHHHHHH
Confidence            99888 8888777665544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.33  E-value=3.5e-11  Score=118.88  Aligned_cols=168  Identities=14%  Similarity=0.073  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHH
Q 013568          138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS  215 (440)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~  215 (440)
                      +...++..... .....++|.++++ .|.+..+.+++.+...++..+ .++.|+++||+   |  ||+.+..+.+...++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~---g--~~~~~~~~~~~~~~~  298 (406)
T PRK11551        225 LWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL---R--PRRVVLLIYAGILAS  298 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH---h--HHHHHHHHHHHHHHH
Confidence            33333333333 4555678888887 699999999998888888777 77889999994   4  566665555555555


Q ss_pred             HHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhcc-ch
Q 013568          216 WSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY-GV  294 (440)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~-gw  294 (440)
                      ...+. ..++...+.+..++.|++.+...+...++..|.+|+++|++..++.+....   +|..+||.++|++.++. +|
T Consensus       299 ~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~---~g~~~g~~~~g~l~~~~~~~  374 (406)
T PRK11551        299 LAALA-AAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGR---LGSMAGPLLAGQLLALGRST  374 (406)
T ss_pred             HHHHH-hcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhh---HHHHHHhhhHhhhhccCCch
Confidence            44444 445555566666778887777778888999999999999999998887777   99999999999998765 46


Q ss_pred             HHHHHHHHHHHHHHHHhheee
Q 013568          295 RFVFGVTALLPLITSGVAVLV  315 (440)
Q Consensus       295 ~~~f~i~~~~~~~~~~~~~~~  315 (440)
                      ...+++.+.+.++..+..+++
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        375 VGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            666766666655555544433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.32  E-value=7.3e-11  Score=116.60  Aligned_cols=156  Identities=17%  Similarity=0.221  Sum_probs=116.2

Q ss_pred             hhHHHHHHHHHHHhcCCChhh----hHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhh
Q 013568          149 GLARLAVNFYLKDDLHLDPAE----TAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIV  223 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~----~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~  223 (440)
                      +.....++.|+.+..+ +..+    .+.+.++..++..+ .+++|+++||+   |  ||+.+..+..+..++.+.+. ..
T Consensus       236 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~---g--~~~~~~~~~~~~~~~~~~~~-~~  308 (408)
T PRK09874        236 GSIAPILTLYVRELAG-NVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI---G--PEKILITALIFSVLLLIPMS-FV  308 (408)
T ss_pred             HHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c--cchhHHHHHHHHHHHHHHHH-Hh
Confidence            4455567777776433 3222    34444455555555 67889999994   4  66666666666555555544 44


Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHH
Q 013568          224 ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTAL  303 (440)
Q Consensus       224 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~  303 (440)
                      ++.+.+++.+++.|++.+...+.....+.+..+++++++..++++....   +|..+||.++|++.+..||++.|++.++
T Consensus       309 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~g~~~gp~~~G~l~~~~g~~~~f~~~~~  385 (408)
T PRK09874        309 QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRD---IGNVTGPLMGAAISANYGFRAVFLVTAG  385 (408)
T ss_pred             ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHH---HHHHhhHHHHHHHHhhcchhHHHHHHHH
Confidence            5666777788899999998888888888899999999999888887766   9999999999999999999999999998


Q ss_pred             HHHHHHHhhee
Q 013568          304 LPLITSGVAVL  314 (440)
Q Consensus       304 ~~~~~~~~~~~  314 (440)
                      +.++..+..++
T Consensus       386 ~~l~~~~~~~~  396 (408)
T PRK09874        386 VVLFNAVYSWN  396 (408)
T ss_pred             HHHHHHHHHHH
Confidence            88777665443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.32  E-value=9e-11  Score=115.41  Aligned_cols=153  Identities=12%  Similarity=0.085  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHH
Q 013568          151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSA  229 (440)
Q Consensus       151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~  229 (440)
                      ...++++++++.+|.+..+.+++.+...++..+ .++.|+++||+   |  ||... .+..+..++...+....++.+.+
T Consensus       224 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~---~--~~~~~-~~~~~~~~~~~~l~~~~~~~~~~  297 (390)
T PRK03545        224 AYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH---P--SGFLL-IAIALLLVCLLLLLPAANSEWHL  297 (390)
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc---c--hhHHH-HHHHHHHHHHHHHHHHhchHHHH
Confidence            445677888887899999999988888877776 77889999993   4  55443 33333333333333245566666


Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 013568          230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITS  309 (440)
Q Consensus       230 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~  309 (440)
                      +++.++.|++.+...+.....+.+..| +.++++.++++....   +|..+||.++|++.+++|++..|++.+++.++++
T Consensus       298 ~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~---~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~  373 (390)
T PRK03545        298 SVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFN---IGIGAGALLGNQVSLHLGLSSIGYVGAALALAAL  373 (390)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH
Confidence            777788888887766677778888766 577887887776666   9999999999999999999999999998887776


Q ss_pred             Hhhe
Q 013568          310 GVAV  313 (440)
Q Consensus       310 ~~~~  313 (440)
                      +...
T Consensus       374 ~~~~  377 (390)
T PRK03545        374 VWSI  377 (390)
T ss_pred             HHHH
Confidence            6443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.31  E-value=6.3e-11  Score=118.89  Aligned_cols=175  Identities=14%  Similarity=0.031  Sum_probs=114.1

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcch-hhhHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRS-YLVLS  208 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~-~l~~~  208 (440)
                      ++.+|.+.+..++.... .....++|.|+++++|++..+.+++..++.++..+ .++.|+++||+   +.+||. ..+..
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~---~~~r~~~~~~~~  328 (452)
T PRK11273        252 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV---FRGNRGATGVFF  328 (452)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCCcchHHHHH
Confidence            44566655555544443 45667999999988899999999888777777766 77889999994   212333 22222


Q ss_pred             HHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHH-HHHHHHH
Q 013568          209 GLLGALSWSLMATI-VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGI-VSSYFSG  286 (440)
Q Consensus       209 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~-ig~~i~g  286 (440)
                      ..+..++.+.+... ..+....+++.++.|.+..........+..|.+|++.|+++.++.+....   +|+. ++|.+.|
T Consensus       329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~---~g~~~~g~~v~g  405 (452)
T PRK11273        329 MTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY---LGGSVAASAIVG  405 (452)
T ss_pred             HHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHH---HHHHHhhhhhHH
Confidence            22222222222211 22333333444444544333333344567899999999999988876555   6655 4799999


Q ss_pred             HhhhccchHHHHHHHHHHHHHHHHhh
Q 013568          287 SMVDAYGVRFVFGVTALLPLITSGVA  312 (440)
Q Consensus       287 ~l~~~~gw~~~f~i~~~~~~~~~~~~  312 (440)
                      ++.++.||+..|++.+++++++++..
T Consensus       406 ~l~~~~g~~~~f~~~~~~~~~~~~~~  431 (452)
T PRK11273        406 YTVDFFGWDGGFMVMIGGSILAVILL  431 (452)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            99999999999999888777766543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.31  E-value=1.9e-11  Score=122.66  Aligned_cols=172  Identities=14%  Similarity=0.125  Sum_probs=125.7

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhh-hHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYL-VLS  208 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l-~~~  208 (440)
                      ++.++.+.+..+...+. .....++++|+++ +|.+..+.+++.++..++..+ +++.|+++||.. .+ +|+..+ ..+
T Consensus       240 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~-~~-~~~~~~~~~~  316 (455)
T TIGR00892       240 HRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKW-IR-PHVQYLFSFA  316 (455)
T ss_pred             CchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cC-HHHHHHHHHH
Confidence            34555555544444444 3445678888877 799999999998888887776 889999999731 11 122222 223


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          209 GLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      .++..++.+.+. ..++.+.+++.+++.|++.+...+...+++.|.+|++++++..++++....   +|.++||.++|++
T Consensus       317 ~~~~~l~~ll~~-~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~---lg~~igp~i~G~l  392 (455)
T TIGR00892       317 LLFNGLTHLLCA-LAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVEC---CAVLIGPPLAGRL  392 (455)
T ss_pred             HHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHH---HHHHccccceeee
Confidence            333333333333 456777778888999999998888899999999999999999888887777   9999999999999


Q ss_pred             hhcc-chHHHHHHHHHHHHHHHH
Q 013568          289 VDAY-GVRFVFGVTALLPLITSG  310 (440)
Q Consensus       289 ~~~~-gw~~~f~i~~~~~~~~~~  310 (440)
                      .+.. +|++.|++.+++.++..+
T Consensus       393 ~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       393 VDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             ehhcCCcchHHHHhhHHHHHHHH
Confidence            9877 599999998876665544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.30  E-value=8.7e-11  Score=115.82  Aligned_cols=158  Identities=16%  Similarity=0.206  Sum_probs=119.3

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY  227 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~  227 (440)
                      +....+++.++.+ .|.+  ..++..+.+.++..+ .++.|++.||+   |  +|+.+..+..+..++.+++. ..++.+
T Consensus       233 ~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~---~--~~~~~~~~~~~~~~~~~~~~-~~~~~~  303 (399)
T PRK05122        233 GTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL---G--GLRVAIVSLLVEILGLLLLW-LAPSPW  303 (399)
T ss_pred             HHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh---c--cHHHHHHHHHHHHHHHHHHH-HhccHH
Confidence            3444566777766 4663  445555666677666 67889999993   4  66667666666666666655 456666


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      ..++..++.|++.+...+.......|..|+++|++..++++....   +|..+++.+.|++.+..||++.|++.+++.++
T Consensus       304 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~---~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  380 (399)
T PRK05122        304 MALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLD---LSLGITGPLAGLVASWFGYPSIFLAAALAALL  380 (399)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            677778899999988877777888899999999999998887777   89999999999999999999999998888777


Q ss_pred             HHHhheeeccc
Q 013568          308 TSGVAVLVKEQ  318 (440)
Q Consensus       308 ~~~~~~~~~e~  318 (440)
                      .++..++++++
T Consensus       381 ~~~~~~~~~~~  391 (399)
T PRK05122        381 GLALTWLLYRR  391 (399)
T ss_pred             HHHHHHHhccc
Confidence            76655544443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.30  E-value=1.2e-10  Score=114.07  Aligned_cols=154  Identities=14%  Similarity=0.121  Sum_probs=112.2

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY  227 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~  227 (440)
                      .....++|.|+++ .|.+..+.+++.++..++..+ +.+.|+++||+   |  +|+.+..+..+..++.+.+.   . ..
T Consensus       217 ~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~---~--~~~~l~~~~~~~~~~~~~~~---~-~~  286 (381)
T PRK03633        217 GSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF---G--RLLVLRVQVFVVILGSIAML---S-QA  286 (381)
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc---C--cHHHHHHHHHHHHHHHHHHh---h-hH
Confidence            3445567888877 699999999888877777776 77889999994   4  66666666655555443322   1 22


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      ....+.++.|++.....+...+.+.|..|+++++...+.+...+.   +|..+||.++|++.+++||++.|.+.+.+.++
T Consensus       287 ~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~  363 (381)
T PRK03633        287 AMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYT---VGSLLGPSFTAMLMQNYSDNLLFIMIASVSFI  363 (381)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            333456667777666677888888898888776656566655555   99999999999999999999999998887766


Q ss_pred             HHHhheee
Q 013568          308 TSGVAVLV  315 (440)
Q Consensus       308 ~~~~~~~~  315 (440)
                      ..+..++.
T Consensus       364 ~~~~~~~~  371 (381)
T PRK03633        364 YLLMLLRK  371 (381)
T ss_pred             HHHHHHhc
Confidence            65544443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.28  E-value=9.1e-13  Score=117.41  Aligned_cols=289  Identities=16%  Similarity=0.119  Sum_probs=176.2

Q ss_pred             CccHHHHHHHHH---HHHHhhhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhH
Q 013568          132 SPDNFAVAMVYF---VQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVL  207 (440)
Q Consensus       132 ~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~  207 (440)
                      .+|+.++.+.++   ...+++=...++..+.+.+.++..++..++.+++..+..+ ..++|++.||.  +| -|-..++.
T Consensus        40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~--fg-ir~gtii~  116 (459)
T KOG4686|consen   40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRR--FG-IRLGTIIL  116 (459)
T ss_pred             hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhh--hh-hhHHHHHH
Confidence            335555444443   3333444455677777777888889999999999999888 66789999994  77 33333333


Q ss_pred             HHHHHHHHHHHH--HhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHH
Q 013568          208 SGLLGALSWSLM--ATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS  285 (440)
Q Consensus       208 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~  285 (440)
                      +.+ ..++.+++  +...+.++++.+.|++.|+|.-...++-+.+..-++..++.+...+++.....   +|..+--.+.
T Consensus       117 ~~f-v~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR---~GstvNf~lm  192 (459)
T KOG4686|consen  117 CIF-VFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVAR---LGSTVNFLLM  192 (459)
T ss_pred             HHH-HHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHH---hhceeeeeec
Confidence            332 22333322  23457899999999999999988888899999999999999999998887777   7877776777


Q ss_pred             HHhhhccc------------hHHHHHH-HHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhc
Q 013568          286 GSMVDAYG------------VRFVFGV-TALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVK  352 (440)
Q Consensus       286 g~l~~~~g------------w~~~f~i-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  352 (440)
                      +++.+..+            --.+|-. .....++.+...-+ -+++.++...+++....     |.  .++.+.+  -.
T Consensus       193 ~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~-~D~rAerilh~e~g~~G-----e~--pkLtdv~--~f  262 (459)
T KOG4686|consen  193 PFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGL-SDDRAERILHLEEGFLG-----EE--PKLTDVN--TF  262 (459)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHhhhcCccc-----CC--ccccccc--cc
Confidence            77765432            1111111 11111122111112 12211110000000000     00  0000100  12


Q ss_pred             CcchhhhHHHHHhhhcccc-ccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          353 QPNVFLPTLFVFLWQATPH-SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       353 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      .|.+|.+.+..++|..... +...-..++.+.+|+|+..++.+.+..-....+...+.|.++||.|++...+.+..+..+
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl  342 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTL  342 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHH
Confidence            4678887776666554221 111223444578999999998888766666667778899999999998888777766666


Q ss_pred             Hhhhhh
Q 013568          432 LGMTQV  437 (440)
Q Consensus       432 ~~~~~l  437 (440)
                      .+-..+
T Consensus       343 ~~H~~l  348 (459)
T KOG4686|consen  343 LGHSGL  348 (459)
T ss_pred             HHhhhH
Confidence            554433

>TIGR00897 2A0118 polyol permease family

Probab=99.28  E-value=2.4e-10  Score=112.83  Aligned_cols=174  Identities=14%  Similarity=0.128  Sum_probs=121.0

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      ++.++...+.+++.... .....++|.|+++ +|++..+.+++.+...++..+ .++.|+++||+   | +||.....+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~---~-~~~~~~~~~~  295 (402)
T TIGR00897       221 NPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL---G-WMNTVRWFGG  295 (402)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh---c-chhHHHHHHH
Confidence            44566666666655554 4556688888876 799999999888888887777 78889999994   5 4444333333


Q ss_pred             HHHHHHHHHHHhh----hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHH
Q 013568          210 LLGALSWSLMATI----VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS  285 (440)
Q Consensus       210 ~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~  285 (440)
                      +...++.+.+...    .++.+..+++.++.|++.+...+ ....+.|..| ++|++..++.+....   +|..++|.++
T Consensus       296 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~---lg~~~gp~i~  370 (402)
T TIGR00897       296 VGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAG---LSAFLAPAIA  370 (402)
T ss_pred             HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHH---HHHHHHHHHH
Confidence            3333322222211    23445556667777877776543 4456667654 578988888887777   9999999999


Q ss_pred             HHhhhccchHHHHHHHHHHHHHHHHhheee
Q 013568          286 GSMVDAYGVRFVFGVTALLPLITSGVAVLV  315 (440)
Q Consensus       286 g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~  315 (440)
                      |.+.+.+||...|++.+++.++..+..+|+
T Consensus       371 g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       371 VLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998887776655554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=99.25  E-value=1.5e-10  Score=107.39  Aligned_cols=264  Identities=18%  Similarity=0.180  Sum_probs=167.7

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHHHhhhhhhcccc--CcCCCCcchhhhHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSL--PLFGYRRRSYLVLSGL  210 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~g~l~Dr~--~~~G~~rr~~l~~~~~  210 (440)
                      .++.+.+.|..||+- +... .+|..++. -|+|.+..+. ++...-++.+..+|+++.|.+  +++| |||.+++-+..
T Consensus        32 ~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~-fS~ay~P~sLKllWaPiVDs~y~k~~G-rrksWvvp~q~  107 (510)
T KOG3574|consen   32 SILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAI-FSFAYWPFSLKLLWAPIVDSVYSKRFG-RRKSWVVPCQY  107 (510)
T ss_pred             hHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhh-hhhhhhHHHHHHHHHhhhHHHHHHhhc-cccceeeehHH
Confidence            577889999999997 6665 88888886 4999998885 567778888899999999943  3478 89988887777


Q ss_pred             HHHHHHHHHHhhhc----------hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHH
Q 013568          211 LGALSWSLMATIVE----------SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIV  280 (440)
Q Consensus       211 ~~~~~~~~~~~~~~----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~i  280 (440)
                      +.......++...+          +...+....++..+..+.++.++.++.-.+..+++.|.+....+.+..   .|.++
T Consensus       108 llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~---~GyfL  184 (510)
T KOG3574|consen  108 LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQT---AGYFL  184 (510)
T ss_pred             HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHh---hhHHh
Confidence            76666555553332          122234456788899999999999999999999999988777766555   55555


Q ss_pred             HHHHHHHhhh-----c--cch---------HHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHH
Q 013568          281 SSYFSGSMVD-----A--YGV---------RFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNM  344 (440)
Q Consensus       281 g~~i~g~l~~-----~--~gw---------~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (440)
                      |..+.-.+..     .  .+|         ....+..+.+..+.-.+..+.++++.....++..         ...++..
T Consensus       185 ~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e~~---------~~i~~~y  255 (510)
T KOG3574|consen  185 GNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEELE---------LGIHESY  255 (510)
T ss_pred             hcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhh---------cCHHHHH
Confidence            5433322211     0  011         1112223333333333333334433322111100         2445667


Q ss_pred             HHHHHHhcCcchhhhHHHHHhhhccccccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 013568          345 FQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFL  413 (440)
Q Consensus       345 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~  413 (440)
                      +-++++++-|.+...+.+...+-..+....+.+..-.-+.|++..+.+++..+.....++.....|++.
T Consensus       256 k~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~t  324 (510)
T KOG3574|consen  256 KLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWT  324 (510)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeec
Confidence            778888888887777766666555433444443332247799888877766554445555555555554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.23  E-value=1.9e-10  Score=111.98  Aligned_cols=160  Identities=17%  Similarity=0.180  Sum_probs=110.4

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      ++.++.+.+.++..... .....+.|.++++.+|.+..+.+++.+...++..+ .++.|+++||.  .+ +||..+....
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~--~~-~~~~~~~~~~  291 (379)
T TIGR00881       215 NKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKL--FN-GRRGPLAVFF  291 (379)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHH--cC-CcchHHHHHH
Confidence            34566666665555554 56667889999888899999999988888887777 77889999983  22 2333322221


Q ss_pred             -HHHHHHHHHHHhh--hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHH
Q 013568          210 -LLGALSWSLMATI--VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG  286 (440)
Q Consensus       210 -~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g  286 (440)
                       ....++..... .  ..+.....++.++.|+...........+..|..|++.|+++.++.+....   +|..++|.+.|
T Consensus       292 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~---~g~~~~~~~~g  367 (379)
T TIGR00881       292 MALIIVSLLVYW-LNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAY---LGGILAGLPLG  367 (379)
T ss_pred             HHHHHHHHHHHh-cCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhh---hhhhhhhhhHH
Confidence             22222222222 2  22333444555666665555555667788999999999999998887777   99999999999


Q ss_pred             HhhhccchHHHH
Q 013568          287 SMVDAYGVRFVF  298 (440)
Q Consensus       287 ~l~~~~gw~~~f  298 (440)
                      .+.+++||++.|
T Consensus       368 ~l~~~~g~~~~f  379 (379)
T TIGR00881       368 YLADGFGWAGAF  379 (379)
T ss_pred             HHHHhhcccccC
Confidence            999999998764

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.23  E-value=6.6e-10  Score=109.38  Aligned_cols=177  Identities=8%  Similarity=-0.007  Sum_probs=119.9

Q ss_pred             ccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      ++.+.+.+.++..... .....++|+++++ +|.+..+.|...+++.++..+ .+++|++.||+   |  ||+.+..+..
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~---~--~~~~~~~~~~  278 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ---D--RRKLLMLALV  278 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc---c--chHHHHHHHH
Confidence            3555555555444444 4566788999987 799999999999998888877 77889999993   4  6666666655


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhc-ccccccchhhhHHhhhhhhhHHHHHHHHHHHhh
Q 013568          211 LGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERAR-GESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV  289 (440)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~  289 (440)
                      +..++..++.....+...+  ..++.|++.+...+.......+..+ ++++++..++.+....   ++..++|.+.|++.
T Consensus       279 l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~---~~~~~gp~~~G~l~  353 (393)
T PRK09705        279 LQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGF---IIAGLAPWFSGVLR  353 (393)
T ss_pred             HHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            5555544443233332222  2345677776666666666667765 4566766665554444   89999999999999


Q ss_pred             hccc-hHHHHHHHHHHHHHHHHh-heeeccccc
Q 013568          290 DAYG-VRFVFGVTALLPLITSGV-AVLVKEQQV  320 (440)
Q Consensus       290 ~~~g-w~~~f~i~~~~~~~~~~~-~~~~~e~~~  320 (440)
                      +..| |...|++.+++.++..+. ..+.||++.
T Consensus       354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        354 SISGNYLMDWAFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             HHhCCchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            9886 788888877776666554 445666543

>PRK09952 shikimate transporter; Provisional

Probab=99.22  E-value=7.2e-10  Score=110.74  Aligned_cols=169  Identities=17%  Similarity=0.178  Sum_probs=112.4

Q ss_pred             HHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHH
Q 013568          142 YFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLM  219 (440)
Q Consensus       142 ~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~  219 (440)
                      .++..+. .....+.+.|+++++|++......+..+..+...+ .+++|+++||   +|  ||+.+..+.++..++...+
T Consensus       259 ~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr---~g--rr~~~~~~~~~~~~~~~~~  333 (438)
T PRK09952        259 RLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR---FG--RRRVYITGALIGTLSAFPF  333 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--chHHHHHHHHHHHHHHHHH
Confidence            3333333 45566888899888899887655444444444444 6788999999   45  5566666555444433222


Q ss_pred             Hh-h-h-chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhh-HHhhhhhhhHHHHHHHHHHHhhhcc--c
Q 013568          220 AT-I-V-ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQ-SLCWGSSAFGGIVSSYFSGSMVDAY--G  293 (440)
Q Consensus       220 ~~-~-~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~~~~g~~ig~~i~g~l~~~~--g  293 (440)
                      .. . . ++...+++..++.+++.+...+..++++.|.+|.+.|+...++. +.+..   +|+.++|.+.+++.+..  +
T Consensus       334 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~---lgg~~~p~i~g~l~~~~~~~  410 (438)
T PRK09952        334 FMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASV---VGGGFTPFIAAALVTYFGGS  410 (438)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHH---HHHHHHHHHHHHHHHhcCCC
Confidence            21 1 1 22333344556667887777778899999999999887666653 33333   78999999999998744  4


Q ss_pred             hHHHHHHHHHHHHHHHHhheeeccc
Q 013568          294 VRFVFGVTALLPLITSGVAVLVKEQ  318 (440)
Q Consensus       294 w~~~f~i~~~~~~~~~~~~~~~~e~  318 (440)
                      |+..+.+.+++.++.++..+.++|+
T Consensus       411 ~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        411 WHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHcccc
Confidence            8888888888877777766666653

>PRK10504 putative transporter; Provisional

Probab=99.21  E-value=1.2e-09  Score=110.31  Aligned_cols=155  Identities=15%  Similarity=0.137  Sum_probs=112.1

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      ++.+.......++.... .......|.|++..+|.+..+.+++.....++..+ .+++|+++||   +|  ||+.+..+.
T Consensus       260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r---~g--~~~~~~~~~  334 (471)
T PRK10504        260 TRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR---FG--YRRVLVATT  334 (471)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--chHHHHHHH
Confidence            33455454545544444 44555677788776899999999887777666655 6889999999   45  666777666


Q ss_pred             HHHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHH
Q 013568          210 LLGALSWSLMATIV--ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS  287 (440)
Q Consensus       210 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~  287 (440)
                      .+..+...++....  ++...+.+..++.|++.+...+....+..+..|++.++.+.++.++...   +|..+|+.++|.
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~g~~ig~~i~g~  411 (471)
T PRK10504        335 LGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQ---LSMSIGVTIAGL  411 (471)
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHH---HHHHHHHHHHHH
Confidence            66666555544232  2233334556777888888888888999999999999999999888887   999999999998


Q ss_pred             hhhccch
Q 013568          288 MVDAYGV  294 (440)
Q Consensus       288 l~~~~gw  294 (440)
                      +.+..|+
T Consensus       412 ll~~~g~  418 (471)
T PRK10504        412 LLGLFGQ  418 (471)
T ss_pred             HHHHhhh
Confidence            8776655

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.20  E-value=3.8e-09  Score=106.99  Aligned_cols=162  Identities=12%  Similarity=0.158  Sum_probs=113.1

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHH-hhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHH---HHhhh
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISG-FSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSL---MATIV  223 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s-~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~---~~~~~  223 (440)
                      .....+.++|+.+++|++..+++++.. ...++..+ .+++|+++||   +|  +|+.+.++.++.+++.++   ++...
T Consensus       239 ~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr---~g--~~~~l~i~~~l~~l~~l~~~~l~~~~  313 (491)
T PRK11010        239 AFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR---LS--LFRALMIFGILQGVSNAGYWLLSITD  313 (491)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh--HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            344557788877778999999999874 44456666 6788999999   45  444444444433333222   22112


Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHH
Q 013568          224 ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTAL  303 (440)
Q Consensus       224 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~  303 (440)
                      ++...+.+..++..+..+...+...++..++.+++.+++..++.+....   +|.++++.+.|++.+.+||+..|.+.++
T Consensus       314 ~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~---lg~~~~~~~~G~l~~~~G~~~~f~~~~~  390 (491)
T PRK11010        314 KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSA---VGRVYVGPVAGWFVEAHGWPTFYLFSVA  390 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence            3443444455665555666666778888999999888877777766665   9999899999999999999999999988


Q ss_pred             HHHHHHHhheeeccc
Q 013568          304 LPLITSGVAVLVKEQ  318 (440)
Q Consensus       304 ~~~~~~~~~~~~~e~  318 (440)
                      +.+++++...+++++
T Consensus       391 ~~l~~l~~~~~~~~~  405 (491)
T PRK11010        391 AAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            888877766555554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.20  E-value=1.1e-09  Score=104.88  Aligned_cols=174  Identities=17%  Similarity=0.115  Sum_probs=130.0

Q ss_pred             CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568          131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      .+++++......++.... ....+++.+++++..|+|.+.++++...+.++..+ ..+.|.++||      +.|+.+...
T Consensus       209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr------~~~~~l~~~  282 (394)
T COG2814         209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR------GPRRALIAA  282 (394)
T ss_pred             cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc------cchhHHHHH
Confidence            344566555555444443 45566788899998999999999999999999888 7888999998      355566666


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          209 GLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      ..+.++....+....++....++..++.|+.............++ .-++.+..+++++...+.   +|..+|..++|.+
T Consensus       283 ~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~n---lgia~GA~lGG~v  358 (394)
T COG2814         283 LLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFN---LGIALGAALGGLV  358 (394)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            666666666666566666666677777777776655555555555 335566777888876666   9999999999999


Q ss_pred             hhccchHHHHHHHHHHHHHHHHhhee
Q 013568          289 VDAYGVRFVFGVTALLPLITSGVAVL  314 (440)
Q Consensus       289 ~~~~gw~~~f~i~~~~~~~~~~~~~~  314 (440)
                      .+++|+....++.+++.++++++.++
T Consensus       359 ~~~~g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         359 LDALGYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988887775543

>PRK12382 putative transporter; Provisional

Probab=99.20  E-value=5.9e-10  Score=109.63  Aligned_cols=152  Identities=15%  Similarity=0.180  Sum_probs=116.9

Q ss_pred             hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHH
Q 013568          150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYS  228 (440)
Q Consensus       150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~  228 (440)
                      ....+.+.++++ .|.+.  .++..+.+.++..+ +++.|++.||   +|  +|+.+..+..+..++.+++. ..++...
T Consensus       234 ~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r---~g--~~~~~~~~~~~~~~~~~~~~-~~~~~~~  304 (392)
T PRK12382        234 VIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR---FG--GVKVAIVSLLVETVGLLLLW-LAPTAWV  304 (392)
T ss_pred             HHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh---cC--CCeehHHHHHHHHHHHHHHH-HcccHHH
Confidence            444566777776 46654  45555555666555 6888999999   45  56666666666666666655 5566666


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 013568          229 AALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLIT  308 (440)
Q Consensus       229 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~  308 (440)
                      .+++.++.|++.+...+.....+.|.+++++|++..++++....   +|..+||.+.|++.++.||++.|.+.+++.++.
T Consensus       305 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~---~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~  381 (392)
T PRK12382        305 ALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQD---IAYGVSGPLAGMLATSFGYPSVFLAGAISAVLG  381 (392)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            77788889999888878888888999999999999998887777   999999999999999999999999998887776


Q ss_pred             HHhhe
Q 013568          309 SGVAV  313 (440)
Q Consensus       309 ~~~~~  313 (440)
                      .+..+
T Consensus       382 ~~~~~  386 (392)
T PRK12382        382 IIVTI  386 (392)
T ss_pred             HHHHH
Confidence            66443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.20  E-value=1.5e-12  Score=131.70  Aligned_cols=280  Identities=13%  Similarity=0.095  Sum_probs=2.8

Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHH
Q 013568          138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS  215 (440)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~  215 (440)
                      +++..+.+... +.....+.. +++.|+++.++.|++.+.+-++..+ ..+..++.+|     ++|-+++-.+.++++++
T Consensus         8 ~~~~~~~q~~~~g~~~~~ltt-iErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-----~hrprwig~g~~~~~~g   81 (539)
T PF03137_consen    8 LCLLGLFQMMVSGYVNSSLTT-IERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-----GHRPRWIGIGALLMGLG   81 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cCCcceeeecHHHHHHH
Confidence            45555666444 444444544 5566999999999999999999888 6677999987     26777777888888887


Q ss_pred             HHHHHhhhc----h----------------------------------------------hHHHHHHHHHHHHHHHhhhh
Q 013568          216 WSLMATIVE----S----------------------------------------------KYSAALSILLGSLSVAFSDV  245 (440)
Q Consensus       216 ~~~~~~~~~----~----------------------------------------------~~~~~~~~~l~g~~~~~~~~  245 (440)
                      .++++ +++    .                                              +..++++.++.|+|.+...+
T Consensus        82 ~~l~~-lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t  160 (539)
T PF03137_consen   82 SLLFA-LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT  160 (539)
T ss_dssp             -----------------------------------------------------------------------SSS------
T ss_pred             HHHHh-ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence            76665 221    0                                              11345777899999999999


Q ss_pred             hhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc---------------------cc-hHHHHHHHHH
Q 013568          246 VVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA---------------------YG-VRFVFGVTAL  303 (440)
Q Consensus       246 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~---------------------~g-w~~~f~i~~~  303 (440)
                      ...+++=|..+++.-+...++...+..   +|+++|-++++.+...                     .| |-..|.+.++
T Consensus       161 LG~tYiDDnv~~~~splYiGi~~~~~~---lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~  237 (539)
T PF03137_consen  161 LGITYIDDNVSKKNSPLYIGILYAMSI---LGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGI  237 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeeeccccccccCccchhhhhHHhh---ccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHH
Confidence            999999999999998888888877766   8999998888876521                     12 5455666666


Q ss_pred             HHHHHHHhheeeccccccC----CC---cC-CCCCCCCC---------ccchhhHHHHHHHHHHhcCcchhhhHHHHHhh
Q 013568          304 LPLITSGVAVLVKEQQVLG----PS---RR-QNLPLGDP---------SFFESSKQNMFQLWEAVKQPNVFLPTLFVFLW  366 (440)
Q Consensus       304 ~~~~~~~~~~~~~e~~~~~----~~---~~-~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~  366 (440)
                      +.++..+..++.|++-+..    +.   ++ +......+         ...+..++..+.++++++||.+....+.....
T Consensus       238 ~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~  317 (539)
T PF03137_consen  238 LLFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFE  317 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHH
Confidence            6666666555556433222    00   00 00000000         01123345556677888999876666555444


Q ss_pred             hccc-cccceeeeeeeccCCCChhhHHHHHHHHHH-HHHHHHHHHHHhhccCCc--hhHHHHHHH
Q 013568          367 QATP-HSDSAMFYFTTNELGFTPEFLGRVKFVTSV-ASLLGVGLYNGFLKNVPL--RKIFLANTI  427 (440)
Q Consensus       367 ~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i-~~~~g~~~~~~l~~r~g~--r~~l~~~~~  427 (440)
                      .... +.....+-|...+++.++.++.++.....+ +.++|.+++|++.+|++.  |+.+....+
T Consensus       318 ~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v  382 (539)
T PF03137_consen  318 SFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIV  382 (539)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHH
Confidence            3322 223333455567899999998888766555 788999999999998753  444444333

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.20  E-value=5.8e-10  Score=111.43  Aligned_cols=180  Identities=12%  Similarity=0.056  Sum_probs=113.9

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      ++.++.+.+..++.... .....++|.|+++..|.+..+.+++.+++.+...+ .++.|+++||+   | ++|+... +.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~---~-~~~~~~~-~~  324 (438)
T TIGR00712       250 NKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV---F-KGNRGAT-GV  324 (438)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh---c-cCcccHH-HH
Confidence            34555554444444333 45556889999987899999999988888777776 78889999994   3 2332222 21


Q ss_pred             HHH---HHHHHHHHhh-hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhH-HHHHHHH
Q 013568          210 LLG---ALSWSLMATI-VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFG-GIVSSYF  284 (440)
Q Consensus       210 ~~~---~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g-~~ig~~i  284 (440)
                      .+.   .++...+... ..+.....+..++.|++.............|.+|+++|+.+.++.+....   +| .++||.+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~---~gg~~~gp~l  401 (438)
T TIGR00712       325 FFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY---LGGSVAASAI  401 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHH---hhhhhhcchh
Confidence            111   1111111111 12223333334444444322222333567799999999999998875544   66 4689999


Q ss_pred             HHHhhhccchHHHHHHHHHHHHHHHH-hheeecccc
Q 013568          285 SGSMVDAYGVRFVFGVTALLPLITSG-VAVLVKEQQ  319 (440)
Q Consensus       285 ~g~l~~~~gw~~~f~i~~~~~~~~~~-~~~~~~e~~  319 (440)
                      .|.+.++.||...|++.+++.+++.+ ..++++|++
T Consensus       402 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       402 VGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999988777666655 455667664

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.18  E-value=4.9e-10  Score=112.87  Aligned_cols=184  Identities=13%  Similarity=0.045  Sum_probs=115.7

Q ss_pred             CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcch-h--h
Q 013568          131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRS-Y--L  205 (440)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~-~--l  205 (440)
                      .++.+|.+++.+++.... ..+..++|.|+++.+|.+..+.+++.++..++..+ .++.|+++||+.+.+..++. .  +
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~  338 (465)
T TIGR00894       259 KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKI  338 (465)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            445677777777777665 56777999999998999999999998887777766 78889999985111100111 1  1


Q ss_pred             hHHHHHH--HHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHH
Q 013568          206 VLSGLLG--ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSY  283 (440)
Q Consensus       206 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~  283 (440)
                      ..+....  .+..+.......+....+++..+.+.+.+...+.......|..|+ ..|...++.+....   +|++++|.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~---l~~~i~p~  414 (465)
T TIGR00894       339 FNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGF---IGGLIAST  414 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHH---HHHHHHHH
Confidence            1111111  111111111122333334444555555555545555556677665 66766666665555   99999999


Q ss_pred             HHHHhhhc---cchHHHHHHHHHHHHHHHHhheeeccc
Q 013568          284 FSGSMVDA---YGVRFVFGVTALLPLITSGVAVLVKEQ  318 (440)
Q Consensus       284 i~g~l~~~---~gw~~~f~i~~~~~~~~~~~~~~~~e~  318 (440)
                      +.|++.+.   .+|+..|++.++..++..+...+....
T Consensus       415 l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~  452 (465)
T TIGR00894       415 LAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSA  452 (465)
T ss_pred             hhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence            99988764   348999999988887777655554433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.18  E-value=5e-10  Score=106.19  Aligned_cols=175  Identities=19%  Similarity=0.156  Sum_probs=127.9

Q ss_pred             cCCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhH
Q 013568          130 DLSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVL  207 (440)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~  207 (440)
                      ..+++.|.+++.|+...-. -.+..++|.|++++||+++.+.|.+...+.+...+ .|++|+++||   +| ++|. ++.
T Consensus       215 ~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR---~G-g~rv-~~~  289 (417)
T COG2223         215 FSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR---IG-GRRV-TLA  289 (417)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh---cc-chhH-HHH
Confidence            3456889999999876554 46777999999999999999999888877776666 9999999999   45 4554 444


Q ss_pred             HHHHHHHHHHHHHhhh------chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHH
Q 013568          208 SGLLGALSWSLMATIV------ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVS  281 (440)
Q Consensus       208 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig  281 (440)
                      ....++++..+.....      .+....++..+..++..+.-......++..+++++. |...++.+...+   +|+..-
T Consensus       290 ~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~-G~v~G~vga~G~---lGGf~l  365 (417)
T COG2223         290 VFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKET-GAVTGIVGAIGG---LGGFFL  365 (417)
T ss_pred             HHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhh-hHHHHHHHHhcc---ccccch
Confidence            4445555555555233      333444454556666666667777888888887744 555666665555   999999


Q ss_pred             HHHHHHhhhccc-hHHHHHHHHHHHHHHHHhhe
Q 013568          282 SYFSGSMVDAYG-VRFVFGVTALLPLITSGVAV  313 (440)
Q Consensus       282 ~~i~g~l~~~~g-w~~~f~i~~~~~~~~~~~~~  313 (440)
                      |...|...+..| +..+|++...+.+++.+..+
T Consensus       366 p~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~  398 (417)
T COG2223         366 PLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTW  398 (417)
T ss_pred             hHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999888887 99999999888887777544

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.17  E-value=6.9e-10  Score=112.70  Aligned_cols=150  Identities=16%  Similarity=0.153  Sum_probs=107.0

Q ss_pred             hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhh-chhH
Q 013568          150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIV-ESKY  227 (440)
Q Consensus       150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~-~~~~  227 (440)
                      .....+|.|+++++|++..+.+++.+...++..+ .++.|+++||   +|  ||+.+..+.++..+..+.+.... .+.+
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr---~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW---LG--TRKAYVCSLLISQLLIIPVFAIGGANVW  367 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--chHHHHHHHHHHHHHHHHHhhccccHHH
Confidence            3456789999877899999999999988888777 6788999999   45  55566555544444433332122 2333


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      .+.+..++.++......+....++.|.+|+++|++..++......   +|..+||.++|++.+.+||+..+.+.++...+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        368 VLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGA---LGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhh---HHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            333444444433333445677788999999999999888876666   99999999999999999999888766544433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.17  E-value=1.8e-09  Score=106.46  Aligned_cols=171  Identities=10%  Similarity=0.080  Sum_probs=118.7

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhc---CCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhh
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDL---HLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLV  206 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~---g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~  206 (440)
                      ++.++.+.+..+..... .....+.+.|+++.+   +.+....|.+.++..+...+ .+..|++.||   +|  ||+.++
T Consensus       214 ~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r---~g--~~~~l~  288 (396)
T TIGR00882       214 QRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR---IG--AKNALL  288 (396)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--cchhHH
Confidence            34555444433333322 344456778887754   45566778777776666655 6778999999   45  666777


Q ss_pred             HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhh-hHHhhhhhhhHHHHHHHHH
Q 013568          207 LSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSL-QSLCWGSSAFGGIVSSYFS  285 (440)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~~~g~~ig~~i~  285 (440)
                      ++.++..+...+.. ..++.+.++++.++.|++..........+..+..+++.++...+. ++....   +|.++++.++
T Consensus       289 ~~~~l~~l~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~---lg~~~~~~l~  364 (396)
T TIGR00882       289 IAGTIMSVRIIGSS-FATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQ---LAMIFLSTLA  364 (396)
T ss_pred             HHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHH---HHHHHHHHhH
Confidence            77776666665555 566777777788888888766655555666666676666655444 444445   9999999999


Q ss_pred             HHhhhccchHHHHHHHHHHHHHHHHh
Q 013568          286 GSMVDAYGVRFVFGVTALLPLITSGV  311 (440)
Q Consensus       286 g~l~~~~gw~~~f~i~~~~~~~~~~~  311 (440)
                      |++.+.+||+.+|.+.+++.++..+.
T Consensus       365 G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       365 GNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999998887776553

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.17  E-value=2.3e-09  Score=105.12  Aligned_cols=167  Identities=16%  Similarity=0.147  Sum_probs=119.0

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      +++++.+.+..+..... ......++.|+++ .|.+..+.|.+.++..+...+ +++.|++.||   +|  +|+.+..+.
T Consensus       204 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r---~~--~~~~l~~~~  277 (382)
T PRK11128        204 EPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR---WS--ARDLLLLSA  277 (382)
T ss_pred             ChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH---CC--HHHHHHHHH
Confidence            44566555544443333 3455566778866 799999999988877666555 6788999998   44  666777777


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhH-HhhhhhhhHHHHHHHHHHHh
Q 013568          210 LLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQS-LCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~~g~~ig~~i~g~l  288 (440)
                      +...++.+.+. ..++.+.+++..++.|++.+...+....++.+. +++++++..++.+ ....   +|..+||.++|.+
T Consensus       278 ~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~g~~ig~~i~G~l  352 (382)
T PRK11128        278 ICGVVRWGLMG-STTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMG---GSIAIMTVLSGFL  352 (382)
T ss_pred             HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            77777766666 567777778888999999988877888877776 4555566666554 3333   7889999999999


Q ss_pred             hhccchHHHHHHHHHHHHHHHH
Q 013568          289 VDAYGVRFVFGVTALLPLITSG  310 (440)
Q Consensus       289 ~~~~gw~~~f~i~~~~~~~~~~  310 (440)
                      .+.+|+ ..|+..+++.+++++
T Consensus       353 ~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        353 YQHLGA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHhccH-HHHHHHHHHHHHHHH
Confidence            999988 466666666655443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.16  E-value=8.5e-10  Score=111.36  Aligned_cols=180  Identities=17%  Similarity=0.135  Sum_probs=109.2

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-Hhhhhhhcccc-CcCCCC-cchhhhH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSL-PLFGYR-RRSYLVL  207 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~-~~~G~~-rr~~l~~  207 (440)
                      ++++|.+++.++..... .....++|.|+.+++|++..+.+.+.++..++..+ .+++|+++||+ ++.+.+ |+..+.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~  330 (476)
T PLN00028        251 NYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWI  330 (476)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHH
Confidence            44566666655544333 34566788898887899999999988888887777 78899999995 112211 1222222


Q ss_pred             HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHH
Q 013568          208 SGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS  287 (440)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~  287 (440)
                      ..++..++.+++. ..++....++..++.+++.+.......++..++.| +.++...++.+.+..   +|+++++.+.+ 
T Consensus       331 ~~~l~~i~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~---lg~~i~~~l~~-  404 (476)
T PLN00028        331 VQTLGGVFCIWLG-RANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGN---VGAVLTQLLFF-  404 (476)
T ss_pred             HHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhcccc---HHHHHHHHHHH-
Confidence            3222223223333 33444444555566666666555566666666654 567766666543332   66666655443 


Q ss_pred             hhhccchHHHHHHHHHHHHHHHHhheeecc
Q 013568          288 MVDAYGVRFVFGVTALLPLITSGVAVLVKE  317 (440)
Q Consensus       288 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e  317 (440)
                      .....+|+..|++.+++.+++.++.++++.
T Consensus       405 ~~~~~~y~~~f~~~~~~~~i~~~~~~~~~~  434 (476)
T PLN00028        405 TGSSYSTETGISLMGVMIIACTLPVAFIHF  434 (476)
T ss_pred             hcCCccHhhHHHHHHHHHHHHHHHHHheec
Confidence            112346999999998888777776665543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.16  E-value=1.4e-09  Score=106.54  Aligned_cols=181  Identities=17%  Similarity=0.141  Sum_probs=123.9

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHH-hcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKD-DLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~-~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      .++...+..+..+.. +++....-+|+++ |.+.+.+..|++.+...++.++ .|.+|+++.|.   |+-||| ++.+.+
T Consensus        35 si~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~---~~~k~P-li~s~i  110 (488)
T KOG2325|consen   35 SIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT---GSVKKP-LIVSFL  110 (488)
T ss_pred             hHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc---CCcccC-HHHHHH
Confidence            345555556666665 4555555566665 3577788899999999999988 89999999983   422555 455556


Q ss_pred             HHHHHHHHHH---hhhc-hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHH
Q 013568          211 LGALSWSLMA---TIVE-SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG  286 (440)
Q Consensus       211 ~~~~~~~~~~---~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g  286 (440)
                      +.+++.++..   ..++ ..+.++++|++.|+|.+.. ...-+++++....++|.++.+..+.+..   +|.++||.+..
T Consensus       111 i~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~v---lg~ilGp~~q~  186 (488)
T KOG2325|consen  111 IAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFV---LGIILGPTIQL  186 (488)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHH---HHHHHhHHHHH
Confidence            6666655552   2233 5678899999999998765 4788999998888888888777766555   66666666655


Q ss_pred             Hhhh----cc---------chHHHHHHHHHHHHHHHH-hheeeccccccC
Q 013568          287 SMVD----AY---------GVRFVFGVTALLPLITSG-VAVLVKEQQVLG  322 (440)
Q Consensus       287 ~l~~----~~---------gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~  322 (440)
                      .+..    .+         -+..+-|+++++.++.++ +.++++|.....
T Consensus       187 ~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  187 AFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             HHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence            4431    11         134556777777766665 455677776544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.15  E-value=5.9e-10  Score=112.02  Aligned_cols=173  Identities=14%  Similarity=0.091  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHH
Q 013568          138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS  215 (440)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~  215 (440)
                      .++.++..... .....+.+.++++ +|.+..+.++......+...+ .+++|+++||   +|  ||+.+..+.++..++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~~--~~~~~~~~~~~~~~~  362 (481)
T TIGR00879       289 VVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR---FG--RRPLLLIGAAGMAIC  362 (481)
T ss_pred             HHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--chHHHHHHHHHHHHH
Confidence            33333333333 3344455555555 799998888887777777666 7788999999   45  666666666655555


Q ss_pred             HHHHHhh---h-c------hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHH
Q 013568          216 WSLMATI---V-E------SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS  285 (440)
Q Consensus       216 ~~~~~~~---~-~------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~  285 (440)
                      .+++...   . +      +...+....++.+.......+....++.|.+|+++|+++.++......   +|.+++|.+.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---lg~~i~~~~~  439 (481)
T TIGR00879       363 LFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANW---LANFIVGFLF  439 (481)
T ss_pred             HHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            4444311   1 1      222222222222222223345666778999999999999888887777   9999999999


Q ss_pred             HHhhhccchHHHHHHHHHHHHHHHHhh-eeecccc
Q 013568          286 GSMVDAYGVRFVFGVTALLPLITSGVA-VLVKEQQ  319 (440)
Q Consensus       286 g~l~~~~gw~~~f~i~~~~~~~~~~~~-~~~~e~~  319 (440)
                      +++.++.||++.|++.++++++.++.. ++.||++
T Consensus       440 ~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       440 PTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence            999998999999999888877776644 4566654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.13  E-value=3e-09  Score=106.36  Aligned_cols=181  Identities=17%  Similarity=0.146  Sum_probs=134.5

Q ss_pred             ccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      +......+.+++..-. +.+......|.++++|++..+...+..+..+..++ ..++|++.||   +|.++|+.++.+.+
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r---~g~k~~~~l~~~l~  357 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR---FGPKTKRTLLISLI  357 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCchhHHHHHHHH
Confidence            3444455555543333 44455666777878999999988776666666666 6688999999   56222356655554


Q ss_pred             HHHHHHHHHHhh--------hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHH
Q 013568          211 LGALSWSLMATI--------VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSS  282 (440)
Q Consensus       211 ~~~~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~  282 (440)
                      +..+..+... +        .++.+.+.+.-++.|++.|...+...++.+++.|+++.+...+++.+..-   ...++||
T Consensus       358 ~~~~i~~~g~-~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk---~ss~lGP  433 (477)
T PF11700_consen  358 LWIIIPLYGL-FGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGK---ASSWLGP  433 (477)
T ss_pred             HHHHHHHHHH-HHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHH---HHHHHHH
Confidence            4433322222 3        45667778888899999999999999999999999999988898887777   9999999


Q ss_pred             HHHHHhhhccc-hHHHHHHHHHHHHHHHHhheeeccccc
Q 013568          283 YFSGSMVDAYG-VRFVFGVTALLPLITSGVAVLVKEQQV  320 (440)
Q Consensus       283 ~i~g~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~e~~~  320 (440)
                      ++.|.+.+..| -|+.+....++.++++++.++++.++.
T Consensus       434 ll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g  472 (477)
T PF11700_consen  434 LLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKG  472 (477)
T ss_pred             HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhh
Confidence            99999998886 889999888888888887777777654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.13  E-value=6.2e-09  Score=103.10  Aligned_cols=231  Identities=16%  Similarity=0.143  Sum_probs=149.1

Q ss_pred             HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH--HHhhhhhhhHHHHhhhcccccc
Q 013568          184 KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLS--VAFSDVVVDSMVVERARGESQS  261 (440)
Q Consensus       184 ~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~~~~~~r~  261 (440)
                      .|+.|.++||   +|  ||..+........+...++. +.. ++..+    +.++.  .+.......++++|....++|.
T Consensus        79 s~~iG~lSD~---~g--rk~~L~~~~~~~~l~~~~~~-~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~  147 (463)
T KOG2816|consen   79 SPLIGALSDR---YG--RKVVLLLPLFGTILPALCLL-FQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERS  147 (463)
T ss_pred             HhhhHHhhhh---hh--hhhhHHHHHHHHHHhHHHHH-HHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHH
Confidence            7899999999   45  88888887777766655555 222 22222    22222  2334557788999999999999


Q ss_pred             cchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH-hheeeccccccCCCcC-CCCC-CCCCccch
Q 013568          262 VSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRR-QNLP-LGDPSFFE  338 (440)
Q Consensus       262 ~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~-~~~~-~~~~~~~~  338 (440)
                      .+.++.+..+.   .+..++|.+++.+.+..|.-.+|++..+..++..+ ..+++||+..+++... .... ..+....+
T Consensus       148 ~~~gll~~~~~---~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~  224 (463)
T KOG2816|consen  148 SSIGLLSGTFG---AGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSS  224 (463)
T ss_pred             HHHHHHHHHHH---HHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccch
Confidence            99999888777   99999999999999999999999999988888777 5668888765443331 1000 00111111


Q ss_pred             hhHHHHHHHHHHhcCcchhhhHHHHHh-hhccccccc-eeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHH-Hhhcc
Q 013568          339 SSKQNMFQLWEAVKQPNVFLPTLFVFL-WQATPHSDS-AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYN-GFLKN  415 (440)
Q Consensus       339 ~~~~~~~~~~~~l~~~~~~~~~l~~~~-~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~-~l~~r  415 (440)
                      ...+..+...+.-.+|..+.+++..++ +..-..... ..+++....+|+++.+.+.+.+..++...++.++.. .+...
T Consensus       225 ~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~  304 (463)
T KOG2816|consen  225 HVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI  304 (463)
T ss_pred             hhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222233333332234444444433333 222111222 346666678999999999888877777777776666 56677


Q ss_pred             CCchhHHHHHHHH
Q 013568          416 VPLRKIFLANTIF  428 (440)
Q Consensus       416 ~g~r~~l~~~~~~  428 (440)
                      ++.+++...+...
T Consensus       305 l~~~~~i~lGl~~  317 (463)
T KOG2816|consen  305 LGEKRLISLGLLS  317 (463)
T ss_pred             HhhhhHhhHHHHH
Confidence            7888855555433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.13  E-value=3.8e-09  Score=106.81  Aligned_cols=154  Identities=16%  Similarity=0.185  Sum_probs=127.4

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY  227 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~  227 (440)
                      +.....+|.+.++.+|.+....|++.+.+.+|..+ ..+.+.+.+|+     +++..+..+.++.+++.+.++ +.++.+
T Consensus       235 ~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-----~~~~lv~~~~~~~a~~~~~la-l~~~~~  308 (524)
T PF05977_consen  235 SAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-----SSRRLVLLASLLFALALLLLA-LSPSFW  308 (524)
T ss_pred             hHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CcchhhHHHHHHHHHHHHHHh-cchHHH
Confidence            34455678888888999999999999999999888 45668888873     355666677777777777777 778888


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      ...++.++.|++........++.+-...|++.||+..+++.....   .+..+|.++.|.+.+.+|.+..+.+.++..++
T Consensus       309 ~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~---g~~~lGsll~G~la~~~g~~~al~~a~~~lll  385 (524)
T PF05977_consen  309 LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFF---GGMPLGSLLWGFLADHFGVRTALLIAGAALLL  385 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            888888999999999888899999999999999999999987777   78899999999999999999999887766555


Q ss_pred             HHHh
Q 013568          308 TSGV  311 (440)
Q Consensus       308 ~~~~  311 (440)
                      ..++
T Consensus       386 ~~~~  389 (524)
T PF05977_consen  386 SALI  389 (524)
T ss_pred             HHHH
Confidence            5443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.13  E-value=2.9e-09  Score=104.68  Aligned_cols=169  Identities=12%  Similarity=0.056  Sum_probs=112.3

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhh-hHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSL-PWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l-~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      .++......++.... .......++|++| .|++.+++|++.....+ ...+ ..+.|++.||   +|  +|+.+..+..
T Consensus       209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r---~g--~~~~l~~~~~  282 (390)
T TIGR02718       209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR---AG--LWRTFILGVG  282 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hh--HHHHHHHHHH
Confidence            444444444444333 4445567888887 69999999998777654 3444 4678999999   45  5556655544


Q ss_pred             HHHHHHHHHHhh-----hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcc-cccccchhhhHHhhhhhhhHHHHHHHH
Q 013568          211 LGALSWSLMATI-----VESKYSAALSILLGSLSVAFSDVVVDSMVVERARG-ESQSVSGSLQSLCWGSSAFGGIVSSYF  284 (440)
Q Consensus       211 ~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~g~~ig~~i  284 (440)
                      +..+..+.....     ..+...+.....+.+++.+...+.......+..++ +.+++..++.+....   +|..+||.+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---lg~~~g~~~  359 (390)
T TIGR02718       283 LAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRD---LGELIASSI  359 (390)
T ss_pred             HHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH---HHHHHHHHH
Confidence            432222211101     12222334444555666777777777787777766 778888888877766   999999999


Q ss_pred             HHHhhhccchHHHHHHHHHHHHHHHHh
Q 013568          285 SGSMVDAYGVRFVFGVTALLPLITSGV  311 (440)
Q Consensus       285 ~g~l~~~~gw~~~f~i~~~~~~~~~~~  311 (440)
                      +|++.+..||+..|++.+++.++..+.
T Consensus       360 ~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       360 AGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            999999999999999888776665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.11  E-value=1.5e-09  Score=106.78  Aligned_cols=145  Identities=19%  Similarity=0.195  Sum_probs=107.1

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY  227 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~  227 (440)
                      .....++|.++++++|++..+.+++.+...++..+ .++.|+++||   +|  ||+.+.++.++..+..+......++..
T Consensus       255 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr---~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (405)
T TIGR00891       255 HPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW---LG--RRKAYVCSLLAGQLLIIPVFAIGANVA  329 (405)
T ss_pred             hhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--chhhhHHHHHHHHHHHHHHHHhCCchH
Confidence            34556788888888899999999998888888777 7788999999   45  555555554443232222221334444


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccc-hHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG-VRFVFGVT  301 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~g-w~~~f~i~  301 (440)
                      .+.+..++.+++.+...+...+++.|.+|+++|++..++.+....   +|..++|.++|++.++.| |+..+...
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       330 VLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGN---LGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             HHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHH---HHHHHHHHHHHHHHHhccccchhHHhh
Confidence            555555666666666667778899999999999998888776665   999999999999999988 87776653

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.11  E-value=3.7e-09  Score=102.92  Aligned_cols=175  Identities=14%  Similarity=0.077  Sum_probs=113.3

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHHHhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      ++.+|.+++.+++.... .....|+|.|+++ .|++.. .+...++..+...  +..++++||+.+.| +|+.......+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~--~g~~~~~d~~~r~~-~r~~~~~~~~~  265 (368)
T TIGR00903       191 RKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL--IGVAVIPDRVARAG-LRSIYIRAAAL  265 (368)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH--HHHHHhhHHhhhhh-hHHHHHHHHHH
Confidence            45677777777666554 5667899999977 588764 4554333333222  23488888863334 33333332333


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh
Q 013568          211 LGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD  290 (440)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~  290 (440)
                      +.++....++ ...+....+++..+.+++.....+..+++..|.+|++.|+++.++.+....   +|++++|.+.+.+..
T Consensus       266 ~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~---~~~~~~~~~~~~~~~  341 (368)
T TIGR00903       266 LIAAFFLALA-FELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSR---AISVALALAAMLFIS  341 (368)
T ss_pred             HHHHHHHHHH-HccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHH---HHHHHHHHHHHHHhc
Confidence            3333333333 333333445555666777776767788999999999999999998876655   999999999887773


Q ss_pred             ccchHHHHHHHHHHHHHHHHhheeecc
Q 013568          291 AYGVRFVFGVTALLPLITSGVAVLVKE  317 (440)
Q Consensus       291 ~~gw~~~f~i~~~~~~~~~~~~~~~~e  317 (440)
                        |-+..|.+.++..++..+..+++++
T Consensus       342 --~~~~~f~~~~~~~~i~~~~~~~~~~  366 (368)
T TIGR00903       342 --SAEAYFTFLAILITIAFAIALLLPN  366 (368)
T ss_pred             --CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence              7777888887777776665444344

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.08  E-value=5.9e-09  Score=103.99  Aligned_cols=177  Identities=19%  Similarity=0.242  Sum_probs=102.9

Q ss_pred             ccHHHHHHHHHHH-HHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          133 PDNFAVAMVYFVQ-GVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       133 ~~~~~~~~~~~~~-~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      ++.+.+.+.+++. ... .....++|.++++++|.+..+.++..++..+...+ +++.|+++||+   |  ||+.+..+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~---g--rr~~~~~~~  316 (432)
T PRK10406        242 RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI---G--RRTSMLCFG  316 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C--chHHHHHHH
Confidence            3445444443332 332 45667899999887899998888877776666555 78889999994   5  555554443


Q ss_pred             HHHHHHHHHHHh-h--hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHH
Q 013568          210 LLGALSWSLMAT-I--VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG  286 (440)
Q Consensus       210 ~~~~~~~~~~~~-~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g  286 (440)
                      ++..+..+.+.. .  .++....+....+.+++.+...+..+.+..|++|++.|+.+.++......  .+++...|.+.+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~--~~~g~~~p~~~~  394 (432)
T PRK10406        317 SLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVAN--ALFGGSAEYVAL  394 (432)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHH--HHHHhHHHHHHH
Confidence            333222221110 1  12222222222333344444445677889999999999988887653221  133444777777


Q ss_pred             Hhhhccc-hHHHHHHHHHHHHHHHHhheeecc
Q 013568          287 SMVDAYG-VRFVFGVTALLPLITSGVAVLVKE  317 (440)
Q Consensus       287 ~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~e  317 (440)
                      .+ +..| |...++..++..++.++..+++++
T Consensus       395 ~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l~~  425 (432)
T PRK10406        395 SL-KSIGMETAFFWYVTLMAVVAFLVSLMLHR  425 (432)
T ss_pred             HH-HHhCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence            55 4455 555666666666665555444443

>PRK10054 putative transporter; Provisional

Probab=99.08  E-value=5.2e-09  Score=103.08  Aligned_cols=178  Identities=12%  Similarity=0.009  Sum_probs=118.8

Q ss_pred             ccHHHHHHHHHHHHHh-hhHHHHHHHHHHH--hcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568          133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKD--DLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~--~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      ++++.+.+..++..+. +....+.+.++..  +.+.+....+++.++..+.... +++.|.+.||.   |  +|+.+..+
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~---~--~~~~l~~~  280 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA---N--IRPLMTAG  280 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC---C--chhHHHHH
Confidence            3444444444433332 3333355555532  2456666677776666554444 67889999983   3  67777777


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          209 GLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      .++..++...+....++.+.++++.++.+++.+...+.....+.+..|++.+++..+..+. ..   +|..+||.++|.+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~-~~---~G~~~Gp~~~G~l  356 (395)
T PRK10054        281 TLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQSL-GW---LGAAINPLVSGVI  356 (395)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHHH-HH---HHHHHHHHHHHHH
Confidence            6666666555552234555666778899999888888888899999999999887665542 23   7999999999999


Q ss_pred             hhccchHHHHHHHHHHHHHHHHhhe-eecccc
Q 013568          289 VDAYGVRFVFGVTALLPLITSGVAV-LVKEQQ  319 (440)
Q Consensus       289 ~~~~gw~~~f~i~~~~~~~~~~~~~-~~~e~~  319 (440)
                      .++.|....|++.+....+..+..+ ..+|+|
T Consensus       357 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (395)
T PRK10054        357 LTTLPPWSLFVILALAIVAAWLLMLKGMRARP  388 (395)
T ss_pred             HHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence            9999999999887776665555333 334433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.08  E-value=1.5e-09  Score=107.62  Aligned_cols=166  Identities=14%  Similarity=0.158  Sum_probs=108.4

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHh-cCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDD-LHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~-~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      .+.+|...+.+++.... .....++|.++++. .|.+..+.+++.+...++..+ ..++|+++||+   | +||..+...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~---~-~r~~~~~~~  316 (412)
T TIGR02332       241 TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL---K-ERKHHTALP  316 (412)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc---C-ccHHHHHHH
Confidence            34566666666665554 56677999999872 467888888887778888777 66789999994   4 455444433


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          209 GLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      .++..++.+... ...+....+.+.++.+++.....+.......|.+|+++|+.+.++.+....   +|.+++|.+.|.+
T Consensus       317 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~---~g~~~~p~~~g~i  392 (412)
T TIGR02332       317 YLFAAAGWLLAS-ATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGN---IGSALSPFLIGIL  392 (412)
T ss_pred             HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhh---hhhhhhhhhcccc
Confidence            333333332222 222222222222333333333333444555677888999988888877766   9999999999999


Q ss_pred             hhccc-hHHHHHHHHHHH
Q 013568          289 VDAYG-VRFVFGVTALLP  305 (440)
Q Consensus       289 ~~~~g-w~~~f~i~~~~~  305 (440)
                      .+..| |++.|++.+++.
T Consensus       393 ~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       393 KDATGSFNSGLWFVAALL  410 (412)
T ss_pred             cccCCCCchhHHHHHHHH
Confidence            98875 999998776644

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.07  E-value=1e-09  Score=109.04  Aligned_cols=188  Identities=18%  Similarity=0.128  Sum_probs=124.5

Q ss_pred             cccccccCCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCC---
Q 013568          124 AKFFGVDLSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFG---  198 (440)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G---  198 (440)
                      .|+.....++.+|++.+..++.... ..+..++|.|+++.+|++..+.|++.++..+...+ ..++|.++||....+   
T Consensus       249 vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~  328 (466)
T KOG2532|consen  249 VPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSE  328 (466)
T ss_pred             CCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCch
Confidence            3344445666899999999998887 78888999999999999999999998888877766 889999999972101   


Q ss_pred             -CCcchhhhHHHHHHHHHHHHHHhhhchhH-HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhh
Q 013568          199 -YRRRSYLVLSGLLGALSWSLMATIVESKY-SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAF  276 (440)
Q Consensus       199 -~~rr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  276 (440)
                       .+||..-.++....+++++++++...... ..+++..+.-...|...+....-..|..|++ -+..+++.+....   +
T Consensus       329 t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~-a~~l~g~~~~~~~---~  404 (466)
T KOG2532|consen  329 TTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQH-AGFVMGIINFVGA---L  404 (466)
T ss_pred             HhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchH-HHHHHHHHHHHHH---H
Confidence             13444445566666666666663332222 2222222222222223333333333334333 3445555554444   9


Q ss_pred             HHHHHHHHHHHhhh---ccchHHHHHHHHHHHHHHHHhheee
Q 013568          277 GGIVSSYFSGSMVD---AYGVRFVFGVTALLPLITSGVAVLV  315 (440)
Q Consensus       277 g~~ig~~i~g~l~~---~~gw~~~f~i~~~~~~~~~~~~~~~  315 (440)
                      .++++|.+.|.+.+   ...|+++|++.+++.++..+++.+.
T Consensus       405 ~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  405 AGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            99999999999984   3479999999999888877655544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.07  E-value=5.6e-09  Score=103.12  Aligned_cols=151  Identities=20%  Similarity=0.191  Sum_probs=94.1

Q ss_pred             HHHHHHHHhcCCChhhhHHHHHhhhh-hHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHH---HhhhchhHH
Q 013568          154 AVNFYLKDDLHLDPAETAVISGFSSL-PWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLM---ATIVESKYS  228 (440)
Q Consensus       154 ~l~~~l~~~~g~s~~~~g~~~s~~~l-~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~---~~~~~~~~~  228 (440)
                      ..++++.+++|++.++++++.+...+ +..+ .++.|++.||+   |  +|+.+..+.++..+..+.+   +...++.+.
T Consensus       231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~---g--~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~  305 (402)
T PRK11902        231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL---G--LYRSLMLFGVLQAVSNLGYWVLAVTPKHLWT  305 (402)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---h--HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence            44556666689999999998765544 3455 67889999994   4  5555555444444332222   212234444


Q ss_pred             HHHHHHH----HHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHH
Q 013568          229 AALSILL----GSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALL  304 (440)
Q Consensus       229 ~~~~~~l----~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~  304 (440)
                      ++++.++    .|++.+...+....++.+..|.++    .++++....   +|.++++.++|.+.+++||+..|.+.+++
T Consensus       306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---l~~~~~~~~~G~l~~~~G~~~~f~~~~~~  378 (402)
T PRK11902        306 MALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALAS---VGRVYVGPTSGYLVEAYGWPGFYLMTVVI  378 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            4444433    344444445555555555555443    344444444   78877777899999999999999999888


Q ss_pred             HHHHHHhheeec
Q 013568          305 PLITSGVAVLVK  316 (440)
Q Consensus       305 ~~~~~~~~~~~~  316 (440)
                      +++..++....+
T Consensus       379 ~~~~~~~~~~~~  390 (402)
T PRK11902        379 ALPGLALLWLMR  390 (402)
T ss_pred             HHHHHHHHHHHh
Confidence            877766554333

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=99.05  E-value=1.5e-08  Score=98.11  Aligned_cols=273  Identities=19%  Similarity=0.199  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHHHh-hhHHHHHHHHHHH-hcCCChhhhHHHHHhhhhhHHHHhhhhhhcccc--CcCCCCcchhhhHHHHH
Q 013568          136 FAVAMVYFVQGVL-GLARLAVNFYLKD-DLHLDPAETAVISGFSSLPWLIKPLYGFISDSL--PLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       136 ~~~~~~~~~~~~~-~~~~~~l~~~l~~-~~g~s~~~~g~~~s~~~l~~~~~~~~g~l~Dr~--~~~G~~rr~~l~~~~~~  211 (440)
                      ..+.+.|+.||+- ++....+|..+++ .-++|.++.|. +++...+|.+..+|+++.|-+  +++| |||.+++-...+
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~-fSla~~PfSlKlLWaPiVDs~y~~~~G-RRKSWiiP~Q~l   80 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAI-FSLASYPFSLKLLWAPIVDSVYSKRIG-RRKSWIIPIQYL   80 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhHhee-eeeeechhHHHHhhhhhhhhhcccccC-CcchhhhHHHHH
Confidence            4578889999997 7766788888877 13789998884 677888999999999999997  7899 899998877766


Q ss_pred             HHHHHHHHHhhhc-----------------------hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhH
Q 013568          212 GALSWSLMATIVE-----------------------SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQS  268 (440)
Q Consensus       212 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  268 (440)
                      .++..+.++....                       +...+..+.++.-+..+.++.++.++.-.+..++.++.+....+
T Consensus        81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt  160 (544)
T PF13000_consen   81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT  160 (544)
T ss_pred             HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence            6665555442220                       01123455567777888899999999999999999988777776


Q ss_pred             HhhhhhhhHHHHHHHHHHHhhh-----c--------cc---hHHHHHHHHHHHHH-HHHhheeeccccccCCCc--C---
Q 013568          269 LCWGSSAFGGIVSSYFSGSMVD-----A--------YG---VRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSR--R---  326 (440)
Q Consensus       269 ~~~~~~~~g~~ig~~i~g~l~~-----~--------~g---w~~~f~i~~~~~~~-~~~~~~~~~e~~~~~~~~--~---  326 (440)
                      ++..   +|.+++-.+.-.+-+     .        .|   -..-....+.+.++ ...+.++-+|++..+...  +   
T Consensus       161 vG~~---~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~  237 (544)
T PF13000_consen  161 VGQT---AGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPIN  237 (544)
T ss_pred             hHhh---hhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccccccc
Confidence            6655   666665544333321     0        11   01111122222222 233455556654221100  0   


Q ss_pred             ----CCCC----CCCC-----ccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccccccceeeeeeeccCCCChhhHHH
Q 013568          327 ----QNLP----LGDP-----SFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGR  393 (440)
Q Consensus       327 ----~~~~----~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~  393 (440)
                          +.++    .++.     ......++..+.+++++|.|.+..+++..+..-+......+....-.-+.|++.++.++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlEkG~~KE~LAl  317 (544)
T PF13000_consen  238 KSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLEKGLSKEDLAL  317 (544)
T ss_pred             cccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHHcCCCHHHhHH
Confidence                0000    0000     01123456677888999999988877776666553322222222111368999988887


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 013568          394 VKFVTSVASLLGVGLYNGFL  413 (440)
Q Consensus       394 ~~~~~~i~~~~g~~~~~~l~  413 (440)
                      +..+..-..++..+..+++.
T Consensus       318 ~~li~~P~qii~~~~~~Kws  337 (544)
T PF13000_consen  318 LVLIDFPFQIILPYYIGKWS  337 (544)
T ss_pred             HHHHhhhHHHHHHHHhhhhh
Confidence            77665555555556666654

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.05  E-value=2.4e-09  Score=108.89  Aligned_cols=173  Identities=12%  Similarity=0.041  Sum_probs=104.7

Q ss_pred             HHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHH------------HHHhhhhhHHH-HhhhhhhccccCcCCCCcchh
Q 013568          139 AMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAV------------ISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSY  204 (440)
Q Consensus       139 ~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~------------~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~  204 (440)
                      ...++...+. .....+.|.++++ .|++..+.+.            ...+..++..+ ..+.++++||   +|  ||+.
T Consensus       294 ~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr---~g--RR~~  367 (502)
T TIGR00887       294 AGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI---IG--RKPI  367 (502)
T ss_pred             HHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hc--chhH
Confidence            3344444333 3344467777866 6886543211            11112222333 4567999999   45  7777


Q ss_pred             hhHHHHHHHHHHHHHHhhhc--hhHHHHHHHHH-HHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHH
Q 013568          205 LVLSGLLGALSWSLMATIVE--SKYSAALSILL-GSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVS  281 (440)
Q Consensus       205 l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig  281 (440)
                      ++++.++..++.++++....  +....++..++ ..++.....+..+.+.+|++|.+.|+++.++.+....   +|.+++
T Consensus       368 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~---~~~~~~  444 (502)
T TIGR00887       368 QLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGK---AGAIIG  444 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhh---hHHHHH
Confidence            77766666655544442221  11111111111 1222222345667788999999999999988887777   999999


Q ss_pred             HHHHHHhhhc----------cchHHHHHHHHHHHHHHHHhheeeccccc
Q 013568          282 SYFSGSMVDA----------YGVRFVFGVTALLPLITSGVAVLVKEQQV  320 (440)
Q Consensus       282 ~~i~g~l~~~----------~gw~~~f~i~~~~~~~~~~~~~~~~e~~~  320 (440)
                      |.+.+++.+.          .++...|++.+++.++..+..+++||++.
T Consensus       445 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~  493 (502)
T TIGR00887       445 QFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKG  493 (502)
T ss_pred             HHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence            9999998873          34566788887777776666678898764

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.05  E-value=2.8e-09  Score=103.23  Aligned_cols=151  Identities=9%  Similarity=0.001  Sum_probs=114.3

Q ss_pred             cHHHHHHHHHHHHHh-h-hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          134 DNFAVAMVYFVQGVL-G-LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~-~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      .++.+....+..... . ......|.+.++.+|.+..+.+++.+...++..+ .++.|++.||+   |  ||+.+..+..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~--~~~~~~~~~~  285 (365)
T TIGR00900       211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF---K--RMALMTGAIF  285 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c--hhHHHHHHHH
Confidence            444444444443333 2 3336778888877899999999998888888777 77889999983   4  6666666655


Q ss_pred             HHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhh
Q 013568          211 LGALSWSLMATIVE-SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV  289 (440)
Q Consensus       211 ~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~  289 (440)
                      +..++...+. ..+ +.+..+++.++.|++.+...+...+++.|..|+++|++..++.+....   +|..+++.++|++.
T Consensus       286 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~g~~~~g~l~  361 (365)
T TIGR00900       286 VIGLAILVVG-LTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSH---AAWPLGLILAGPLA  361 (365)
T ss_pred             HHHHHHHHHH-hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            5555555555 344 366677788999999999888999999999999999999998887777   99999999999998


Q ss_pred             hccc
Q 013568          290 DAYG  293 (440)
Q Consensus       290 ~~~g  293 (440)
                      +.+|
T Consensus       362 ~~~g  365 (365)
T TIGR00900       362 DHLG  365 (365)
T ss_pred             HHcC
Confidence            8654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.04  E-value=1.9e-08  Score=99.09  Aligned_cols=168  Identities=14%  Similarity=0.070  Sum_probs=111.1

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      ++.++...+..+..... .....++++++.+++|++..+.+++.....++..+ ..+.|++.||.      +|+.++.+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~------~~~~l~~~~  288 (394)
T PRK10213        215 RPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS------VKLALAGAP  288 (394)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc------chhHHHHHH
Confidence            34455444433333332 22334554444455799999999988888887777 66779999982      333333333


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhh
Q 013568          210 LLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV  289 (440)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~  289 (440)
                      .+..++...+....++.+.+.+..++.|++.+...+...+++.+..|+ ++++..++......   +|..+|+.++|++.
T Consensus       289 ~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---lg~~~G~~l~G~l~  364 (394)
T PRK10213        289 LVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQ---LANTCGAAIGGYAL  364 (394)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            333333223322445566666777888999988888888888888774 44556665555555   99999999999999


Q ss_pred             hccchHHHHHHHHHHHHHHH
Q 013568          290 DAYGVRFVFGVTALLPLITS  309 (440)
Q Consensus       290 ~~~gw~~~f~i~~~~~~~~~  309 (440)
                      +..|++..++..+++.++..
T Consensus       365 ~~~g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        365 DNIGLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             hccChhhHHHHHHHHHHHHH
Confidence            99999998888776554443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.03  E-value=1.8e-08  Score=100.64  Aligned_cols=139  Identities=21%  Similarity=0.154  Sum_probs=94.0

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHH-HHHh--hhc
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWS-LMAT--IVE  224 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~-~~~~--~~~  224 (440)
                      .....++|.|+++.+|++..+.++...+..++..+ .+++|+++||   +|  ||+.++.+..+..+... ....  ..+
T Consensus       255 ~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr---~g--~r~~~~~~~~~~~~~~~~~~~~~~~~~  329 (434)
T PRK15075        255 YLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR---IG--RRPVLIAFTVLAILTAYPALSWLVAAP  329 (434)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--chHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            45677899999987899999988887777777666 7788999999   45  55555544333222111 1111  122


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhh-HHhhhhhhhHHHHHHHHHHHhhhccchH
Q 013568          225 SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQ-SLCWGSSAFGGIVSSYFSGSMVDAYGVR  295 (440)
Q Consensus       225 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~~~~g~~ig~~i~g~l~~~~gw~  295 (440)
                      +...+.+..++.+++.+...+....++.|.+|++.|+.+.++. +.+..   +++.++|.+.|++.+..|++
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~---~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATA---IFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHH---HHhhhHHHHHHHHHHhcCCc
Confidence            3333334445556666666666778899999999999887774 33333   45778999999999988854

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.02  E-value=2.1e-08  Score=98.26  Aligned_cols=179  Identities=21%  Similarity=0.283  Sum_probs=124.7

Q ss_pred             CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcC-CChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhH
Q 013568          131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLH-LDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVL  207 (440)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g-~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~  207 (440)
                      .+++++...+..+..+.. +.+....+.|+++ .| .+....+.+.++..++=.. -.+.+++..|   +|  -|+++.+
T Consensus       205 k~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~-~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r---~g--~~~ll~~  278 (400)
T PF03825_consen  205 KNPRFLVFLLAAFLIGISHAAYYTFFSIYLQE-LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR---FG--IKWLLLL  278 (400)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--HHHHHHH
Confidence            344566555555555555 6777888899988 46 7777777665444443333 2345777777   45  7778888


Q ss_pred             HHHHHHHHHHHHHhhhchhHHHHHH----HHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHh-hhhhhhHHHHHH
Q 013568          208 SGLLGALSWSLMATIVESKYSAALS----ILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLC-WGSSAFGGIVSS  282 (440)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~g~~ig~  282 (440)
                      +.+..++=+.+.+...++.+...+.    ..+.|+..+........++.+..|++.|+++.++++.. .+   +|..+|.
T Consensus       279 a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~G---lg~~iG~  355 (400)
T PF03825_consen  279 ALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFG---LGGAIGS  355 (400)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhh---HHHHHHH
Confidence            8888888777777443554443333    34699999999999999999999999999999988754 56   9999999


Q ss_pred             HHHHHhhhccchH------HHHHHHHHHHHHHHHh-heeeccc
Q 013568          283 YFSGSMVDAYGVR------FVFGVTALLPLITSGV-AVLVKEQ  318 (440)
Q Consensus       283 ~i~g~l~~~~gw~------~~f~i~~~~~~~~~~~-~~~~~e~  318 (440)
                      .++|++.+++|-+      ..+.+.+++.++..++ +++.||+
T Consensus       356 ~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  356 LIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            9999999987644      4455555555554443 3344443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.02  E-value=1e-08  Score=91.86  Aligned_cols=162  Identities=15%  Similarity=0.104  Sum_probs=115.5

Q ss_pred             CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568          131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      +.+.+|.+.+.+++.... .-+...-+.++++.+|+|+...+.+.+......+. .|++|.++||   .| ++-.++..+
T Consensus       262 f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk---~G-~n~~wv~~a  337 (459)
T KOG4686|consen  262 FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK---YG-FNLWWVASA  337 (459)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh---hc-ceehhHHHH
Confidence            345678777777766665 34444567778888999999999887766555555 8999999999   46 344444445


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          209 GLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      .+...++...+.+   +.+.-.....+.|+.++......+..++.+.|+++.|++.++.+   ...|+|-.+.|+++|++
T Consensus       338 ~~~tl~~H~~l~F---t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~q---sIqNLgla~i~Iiag~i  411 (459)
T KOG4686|consen  338 CILTLLGHSGLFF---TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQ---SIQNLGLAFIPIIAGFI  411 (459)
T ss_pred             HHHHHHHhhhHHh---hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHH---HHHhhhhhHHhhhhhee
Confidence            5555566555552   23334556678899999888888999999999999997766555   44559999999999999


Q ss_pred             hhccc---hHHHHHHHH
Q 013568          289 VDAYG---VRFVFGVTA  302 (440)
Q Consensus       289 ~~~~g---w~~~f~i~~  302 (440)
                      .++-|   |--.|.+..
T Consensus       412 ~d~~g~y~~le~ffl~~  428 (459)
T KOG4686|consen  412 ADGDGSYDNLEAFFLII  428 (459)
T ss_pred             ecCCCchhhHHHHHHHH
Confidence            97654   444444433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.02  E-value=1.8e-09  Score=107.77  Aligned_cols=154  Identities=15%  Similarity=0.237  Sum_probs=103.9

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      ++.++.+.+.++..... .......+.+.++.++ +....+++.++..++..+ .+++++++||   +|  ||+.+..+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r---~g--~~~~~~~~~  294 (437)
T TIGR00792       221 NDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK---FG--RKILFAGGI  294 (437)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--cHHHHHHHH
Confidence            44555555555544443 3333334445554444 455667666666666666 7888999999   45  666777777


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhc-------ccccccchhhhHHhhhhhhhHHHHHH
Q 013568          210 LLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERAR-------GESQSVSGSLQSLCWGSSAFGGIVSS  282 (440)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~g~~ig~  282 (440)
                      ++.+++.+.+....++.+..++..++.|++.+...+..+++++|..+       ++.+|...++++....   +|..+++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~---~g~~lg~  371 (437)
T TIGR00792       295 LLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRK---LGQALAG  371 (437)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHH---HHHHHHH
Confidence            66666665555333455556667788889998888889999999876       3345666677776666   9999999


Q ss_pred             HHHHHhhhccch
Q 013568          283 YFSGSMVDAYGV  294 (440)
Q Consensus       283 ~i~g~l~~~~gw  294 (440)
                      .+.|++.+..||
T Consensus       372 ~i~g~ll~~~G~  383 (437)
T TIGR00792       372 FLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHcCC
Confidence            999999876665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.01  E-value=2.3e-08  Score=98.03  Aligned_cols=149  Identities=12%  Similarity=0.155  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHH
Q 013568          152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAA  230 (440)
Q Consensus       152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  230 (440)
                      ...+++++++.+|.+..+.+++.+...++..+ .++.|++.||   +|  +|+.+..+..+..++.+.+....++.+..+
T Consensus       219 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r---~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  293 (382)
T PRK10091        219 FSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR---YS--PLRIAAVTDFIIVLALLMLFFFGGMKTASL  293 (382)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc---cC--chhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            34567778777899999999998888888777 7888999999   44  556666665565555544432334444445


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHh-hhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHH
Q 013568          231 LSILLGSLSVAFSDVVVDSMVVE-RARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA-YGVRFVFGVTALLPLIT  308 (440)
Q Consensus       231 ~~~~l~g~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~-~gw~~~f~i~~~~~~~~  308 (440)
                      ++.++.+++.....+.......+ ..+++.++..  .......   +|..+||.++|++.+. .+|++.+.+.+++.++.
T Consensus       294 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~  368 (382)
T PRK10091        294 IFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFN---LGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAA  368 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHH---HHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHH
Confidence            55555555554433333333333 3333333322  2233344   9999999999999985 68999999887766655


Q ss_pred             HH
Q 013568          309 SG  310 (440)
Q Consensus       309 ~~  310 (440)
                      ..
T Consensus       369 ~~  370 (382)
T PRK10091        369 MS  370 (382)
T ss_pred             HH
Confidence            44

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.01  E-value=3.6e-09  Score=101.04  Aligned_cols=148  Identities=20%  Similarity=0.223  Sum_probs=109.4

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhh-hhHHHHhhhhhhcccc-CcCCCCcchhhhHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSS-LPWLIKPLYGFISDSL-PLFGYRRRSYLVLSGL  210 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~-l~~~~~~~~g~l~Dr~-~~~G~~rr~~l~~~~~  210 (440)
                      +.+.+....+...+. ..-...+++|+++ +|++....+.+-.+.- .+..+||+.|..+||. .++| ||||++..+..
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~G-RRRPfI~~~s~  110 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYG-RRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceecccccccccccccccc-cccchHHHhhH
Confidence            344444444544444 4666788899988 7999998887654443 4445599999999999 7899 99999999988


Q ss_pred             HHHHHHHHHHhhhchhH-----------------HHHHHHHHHHHHHHhhhhhhhHHHHhhhccccccc-chhhhHHhhh
Q 013568          211 LGALSWSLMATIVESKY-----------------SAALSILLGSLSVAFSDVVVDSMVVERARGESQSV-SGSLQSLCWG  272 (440)
Q Consensus       211 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~  272 (440)
                      ..+++.+++. .+.+..                 ..++...+.-+.......+.-+++.|+...+++.+ +++.++.+.+
T Consensus       111 ~i~~~l~Lig-~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~a  189 (498)
T KOG0637|consen  111 LIAVSLFLIG-YAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMA  189 (498)
T ss_pred             HHHHHHhhhh-hHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHH
Confidence            8888877766 333221                 22344455556667788889999999998877776 8999998888


Q ss_pred             hhhhHHHHHHHHHHH
Q 013568          273 SSAFGGIVSSYFSGS  287 (440)
Q Consensus       273 ~~~~g~~ig~~i~g~  287 (440)
                         +|+.+|-..+++
T Consensus       190 ---vGnvLGY~~g~y  201 (498)
T KOG0637|consen  190 ---VGNVLGYALGSY  201 (498)
T ss_pred             ---hcceeeeecccc
Confidence               888888877764

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.99  E-value=2.9e-08  Score=98.12  Aligned_cols=170  Identities=9%  Similarity=-0.113  Sum_probs=112.7

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      +++++.+.+..+..... .......|.++.+++|.+..+.++......++..+ .++.|+++||+   |  +|+.+.++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~---~--~~~~~~~~~  288 (406)
T PRK15402        214 NRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR---P--LRSLIRMGL  288 (406)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--HHHHHHHHH
Confidence            33455544444433332 23344567777777899999999876666666666 67889999993   4  566666666


Q ss_pred             HHHHHHHHHHHhh----hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHH
Q 013568          210 LLGALSWSLMATI----VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS  285 (440)
Q Consensus       210 ~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~  285 (440)
                      ++..++...+...    ..+...+++..++.|++.+...+......... +++++++..++.+....   +|..+|+.++
T Consensus       289 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~---~~~~~g~~~~  364 (406)
T PRK15402        289 WPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSM---LIFTVGIELS  364 (406)
T ss_pred             HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHH---HHHHHHHHHH
Confidence            6555554444421    12444556677888888887766655555433 45788988888887777   8999999999


Q ss_pred             HHhhhccchHHHHHHHHHHHHHHHH
Q 013568          286 GSMVDAYGVRFVFGVTALLPLITSG  310 (440)
Q Consensus       286 g~l~~~~gw~~~f~i~~~~~~~~~~  310 (440)
                      +.+.+..++....+..++..++..+
T Consensus       365 ~~l~~~~~~~~~~~~~~~~~~~~~~  389 (406)
T PRK15402        365 KHAYLGGGNGLFNLFNLANGLLWLL  389 (406)
T ss_pred             HhcccCCchHHHHHHHHHHHHHHHH
Confidence            9998887776655555544444433

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.97  E-value=1.4e-08  Score=101.09  Aligned_cols=143  Identities=13%  Similarity=0.077  Sum_probs=96.6

Q ss_pred             hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHH
Q 013568          150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYS  228 (440)
Q Consensus       150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~  228 (440)
                      ....++|.++++ .|.+..+.+.+.++..++..+ .+++|+++||+   |  ||+.+..+.++..+..+.+.....+.. 
T Consensus       249 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-  321 (426)
T PRK12307        249 PIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI---G--LKKTFSIGLLMSFLFIFPLFRIPQDNY-  321 (426)
T ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c--cHHHHHHHHHHHHHHHHHHHHHccccH-
Confidence            355678888887 599999999888877777766 78889999994   5  666666665555444433331222211 


Q ss_pred             HHHHHHHHHHHH--HhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHH
Q 013568          229 AALSILLGSLSV--AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTA  302 (440)
Q Consensus       229 ~~~~~~l~g~~~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~  302 (440)
                      ..+..++.+++.  ....+....++.|.+|++.|+++.++......   +|+.++|.+.|++.+.+|+....++..
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~---~~~~~gp~~~g~l~~~~g~~~~~~~~~  394 (426)
T PRK12307        322 LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAA---TSGTFNSMAATWLGITMGLGAALTFIV  394 (426)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHh---HHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            222222333322  22334566788999999999999887765555   899999999999999888766544433

>TIGR00895 2A0115 benzoate transport

Probab=98.96  E-value=1e-08  Score=100.48  Aligned_cols=144  Identities=15%  Similarity=0.109  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG  212 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~  212 (440)
                      .+.+.+.++..... .....++|.+. +++|.+..+.+++.++..++..+ .++.|+++||+   |  ||..+.... +.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~--~~~~~~~~~-~~  324 (398)
T TIGR00895       252 TVLLWLLYFMLLVGVYFLTNWLPKLM-VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL---G--PRVTALLLL-LG  324 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---c--hHHHHHHHH-HH
Confidence            33344444443333 44555677444 45899999999988888888777 77889999994   4  554443333 33


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          213 ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      .+...++.....+....+++.++.|++.+...+...+++.|.+|+++|+++.++......   +|..+||.++|++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~---~g~~~g~~~~G~l  397 (398)
T TIGR00895       325 AVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGR---LGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHHHHhHHhc
Confidence            333333332245556667777889999999889999999999999999998888877666   9999999999875

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.95  E-value=7.5e-09  Score=102.10  Aligned_cols=177  Identities=18%  Similarity=0.124  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHh--hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          135 NFAVAMVYFVQGVL--GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       135 ~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      ....+...+.+.+.  .........++++ -|++..++.+......+...+ ..+...+.||   .|  ||+.++.+..+
T Consensus       271 ~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~---~g--RRpLll~~~~~  344 (485)
T KOG0569|consen  271 LLIGIVVSFAQQFSGINAIFFYSTSIFKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR---LG--RRPLLLISLSL  344 (485)
T ss_pred             HHHHHHHHHHHHhcCcceeHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--CcHHHHHHHHH
Confidence            44455555666665  3444445555666 599999888887666666666 6788999999   45  99999998888


Q ss_pred             HHHHHHHHHhhh---chh--H---HHHHHHHHHHHHHHh-hhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHH
Q 013568          212 GALSWSLMATIV---ESK--Y---SAALSILLGSLSVAF-SDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSS  282 (440)
Q Consensus       212 ~~~~~~~~~~~~---~~~--~---~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~  282 (440)
                      ..++.+++....   +..  +   ..+++.++..++.+. ..+..+-+.+|++|++.|+.+.++......   +..++-.
T Consensus       345 ~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w---~~~fiv~  421 (485)
T KOG0569|consen  345 MAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNW---LSNFIVG  421 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHH---HHHHHHH
Confidence            877766655221   111  1   123444555555544 467888899999999999988888877777   7777766


Q ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHHH-hheeecccccc
Q 013568          283 YFSGSMVDAYGVRFVFGVTALLPLITSG-VAVLVKEQQVL  321 (440)
Q Consensus       283 ~i~g~l~~~~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~  321 (440)
                      .....+.+.+|- +.|.+..+..++..+ ++..+||++.+
T Consensus       422 ~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  422 FAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR  460 (485)
T ss_pred             HHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence            666667677776 667777766666655 67789998753

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.95  E-value=3.9e-08  Score=99.36  Aligned_cols=157  Identities=15%  Similarity=0.077  Sum_probs=103.7

Q ss_pred             HHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhh-chh--HHH
Q 013568          154 AVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIV-ESK--YSA  229 (440)
Q Consensus       154 ~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~-~~~--~~~  229 (440)
                      ..|.+.++ +|.+....++......+...+ .++.|+++||   +|  ||+.++.+.++.+++.++++... .+.  ...
T Consensus       293 ~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr---~g--~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~  366 (479)
T PRK10077        293 YAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDK---FG--RKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA  366 (479)
T ss_pred             HHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH---hc--ChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence            44555555 788877766665555555555 7788999999   45  77778887777777666554221 111  122


Q ss_pred             HHHHHHHHHHHHh-hhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHH------HhhhccchHHHHHHHH
Q 013568          230 ALSILLGSLSVAF-SDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG------SMVDAYGVRFVFGVTA  302 (440)
Q Consensus       230 ~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g------~l~~~~gw~~~f~i~~  302 (440)
                      ..+.++.+++.+. ..+....++.|.+|+++|+.+.++......   +|.++++.+.+      ++.+.++|++.|++.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~---~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  443 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQW---IANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG  443 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHH---HHHHHHHHHhHHHHhccchhhhccCccHHHHHH
Confidence            2333444444443 335678999999999999999988877666   77777655544      4446788999999888


Q ss_pred             HHHHHHHHh-heeecccc
Q 013568          303 LLPLITSGV-AVLVKEQQ  319 (440)
Q Consensus       303 ~~~~~~~~~-~~~~~e~~  319 (440)
                      ++.++.++. +++.||++
T Consensus       444 ~~~~~~~~~~~~~~~e~~  461 (479)
T PRK10077        444 CMGVLAALFMWKFVPETK  461 (479)
T ss_pred             HHHHHHHHHHHhccccCC
Confidence            777666654 44566654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.94  E-value=3.5e-08  Score=110.43  Aligned_cols=168  Identities=10%  Similarity=-0.000  Sum_probs=122.6

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      ++.++.+.+.++...+. +....++|.|+++.+|.+..+.|++.+.+.++.++ +++.|+++|+.   +  ++..+..+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~---~--~~~~~~~~~  298 (1140)
T PRK06814        224 DKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR---I--TLLYVPIGA  298 (1140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc---e--eeeeehHHH
Confidence            34566655555554444 56667899999998999999999999999999888 77889999873   2  333444443


Q ss_pred             HHHHHHHHHHHhh-------------------hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHh
Q 013568          210 LLGALSWSLMATI-------------------VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLC  270 (440)
Q Consensus       210 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  270 (440)
                      ++..++.+.+++.                   ..+.+.++++.++.|++.+...+...+++.+.+|++.+|+++++.++.
T Consensus       299 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~  378 (1140)
T PRK06814        299 LLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVL  378 (1140)
T ss_pred             HHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHH
Confidence            4443333323311                   145566677788889999998889999999999999999999999888


Q ss_pred             hhhhhhHHHHHHHHHHHhhh-ccchHHHHHHHHHHHHH
Q 013568          271 WGSSAFGGIVSSYFSGSMVD-AYGVRFVFGVTALLPLI  307 (440)
Q Consensus       271 ~~~~~~g~~ig~~i~g~l~~-~~gw~~~f~i~~~~~~~  307 (440)
                      ..   +|..++++++|.+.+ ..++...|++.+++.++
T Consensus       379 ~~---~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~  413 (1140)
T PRK06814        379 NA---AFMVAGTIILALLQALGFSIPWIILFIALANLI  413 (1140)
T ss_pred             HH---HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            77   999999999998874 45677777665554333

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.92  E-value=3.6e-08  Score=110.45  Aligned_cols=164  Identities=18%  Similarity=0.090  Sum_probs=119.9

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChh-hhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPA-ETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~-~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      .++.+.+..++.... .....+++.++++.+|++.. +.+++.++..++.++ .+++|+++||+   +  ++..+.++.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~---~--~~~~~~~~~~  307 (1146)
T PRK08633        233 VLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH---I--ELGLVPLGAL  307 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---e--EccchhHHHH
Confidence            344444433333333 45666788899888999999 999998888888777 67889999984   4  5556666666


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh
Q 013568          211 LGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD  290 (440)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~  290 (440)
                      +.+++.+++. ...+.+.++++.++.|++.+...+...+++.+..|++.|++..++.++...   +|.++++.+++.+..
T Consensus       308 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~---lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        308 GLALSLFLLP-TAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQN---VGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            6666665555 455666777778889999998888889999999999999999998887777   888888877776643


Q ss_pred             -ccchHHHHHHHHHHHH
Q 013568          291 -AYGVRFVFGVTALLPL  306 (440)
Q Consensus       291 -~~gw~~~f~i~~~~~~  306 (440)
                       .+++...|++.+.+.+
T Consensus       384 ~~~~~~~~~~~~~~~~~  400 (1146)
T PRK08633        384 LGLSPAGLFYLIALVTL  400 (1146)
T ss_pred             hccCHHHHHHHHHHHHH
Confidence             2456666666554443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.92  E-value=3.2e-08  Score=97.71  Aligned_cols=152  Identities=14%  Similarity=0.087  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHH
Q 013568          151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSA  229 (440)
Q Consensus       151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~  229 (440)
                      ....+|.++++. +.++.+.+++.++..+.... ..+.+++.||.  ++  .++.+..+.++..++..+++ ..++.+.+
T Consensus       227 ~~~~~p~~~~~~-~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r--~~--~~~~~~~~~~~~~~~~~~l~-~~~~~~~~  300 (400)
T PRK11646        227 VMLMLPIMVNDI-AGSPSAVKWMYAIEACLSLTLLYPIARWSEKR--FR--LEHRLMAGLLIMSLSMFPIG-MVSNLQQL  300 (400)
T ss_pred             HHHhhhhhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cc--hhHHHHHHHHHHHHHHHHHH-HhhhHHHH
Confidence            345678888875 44778888887766655443 44446666651  23  34445556556666655555 45666666


Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhcc---c-hHHHHHHHHHHH
Q 013568          230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY---G-VRFVFGVTALLP  305 (440)
Q Consensus       230 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~---g-w~~~f~i~~~~~  305 (440)
                      ++..++.+++.+...+...+++.+..|+++|++..++++....   +|..+||.++|++.++.   + ....|++.+++.
T Consensus       301 ~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~---~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~  377 (400)
T PRK11646        301 FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLA---LGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIG  377 (400)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHH---HHHHhcccchHHHHHHHhhcCCcchHHHHHHHHH
Confidence            6666778888888888888999999999999999999988877   99999999999998764   3 245555555555


Q ss_pred             HHHHHh
Q 013568          306 LITSGV  311 (440)
Q Consensus       306 ~~~~~~  311 (440)
                      ++..+.
T Consensus       378 ~~~~~~  383 (400)
T PRK11646        378 LITLLA  383 (400)
T ss_pred             HHHHHH
Confidence            544443

>TIGR00896 CynX cyanate transporter

Probab=98.92  E-value=4e-08  Score=95.24  Aligned_cols=151  Identities=12%  Similarity=0.049  Sum_probs=101.5

Q ss_pred             ccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      +.++.+.+.+++.... .....++|.++++ .|.+..+.+.+.++..++..+ +++.|+++||+   | +||..+..+.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~---~-~~~~~~~~~~~  271 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRV---K-DQRGIVAVLAV  271 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhh---c-cchHHHHHHHH
Confidence            3455444444433333 4455688889887 699999999999998888887 78889999994   3 46666666666


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcc-cccccchhhhHHhhhhhhhHHHHHHHHHHHhh
Q 013568          211 LGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARG-ESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV  289 (440)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~  289 (440)
                      +..++.+.+. ...+.... ...++.|++.+...+...+.+.+..++ ++++...++.+   ..+++|..++|.+.|++.
T Consensus       272 ~~~~~~~~~~-~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~gp~~~G~l~  346 (355)
T TIGR00896       272 LQLVGLCGLL-FAPMHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQ---SIGYLLAALGPLFVGVLH  346 (355)
T ss_pred             HHHHHHHHHH-HhhhhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            6666655555 33322222 244677888888777777776665543 44555555444   333488899999999999


Q ss_pred             hccc
Q 013568          290 DAYG  293 (440)
Q Consensus       290 ~~~g  293 (440)
                      ++.|
T Consensus       347 ~~~g  350 (355)
T TIGR00896       347 DISG  350 (355)
T ss_pred             HHhc
Confidence            8776

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.91  E-value=8.3e-08  Score=91.18  Aligned_cols=146  Identities=16%  Similarity=0.182  Sum_probs=106.2

Q ss_pred             hhHHHHHHHHHHHh--cCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhch
Q 013568          149 GLARLAVNFYLKDD--LHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVES  225 (440)
Q Consensus       149 ~~~~~~l~~~l~~~--~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~  225 (440)
                      .....|++.|+++.  +|++..+.++..+.+..++.+ ..+.++++||   +|  +|+.+.++..+..++.++.. ..++
T Consensus       157 ~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r---~g--~~~~l~~~~~l~~~~~~l~~-~~~~  230 (310)
T TIGR01272       157 VSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM---IS--QGRYLAFNAFLAVLLSIGAA-LTHG  230 (310)
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--HHHHHHHHHHHHHHHHHHHH-HcCC
Confidence            56778999999863  699999999999999998888 6788999999   45  44455566555555544333 3333


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHH
Q 013568          226 KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLP  305 (440)
Q Consensus       226 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~  305 (440)
                      . ......++.|++.+...+...+...+..+++. +.+.++..    .+.+|+.++|.+.|.+.+..|.+..|++..++.
T Consensus       231 ~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-~~asai~~----~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~  304 (310)
T TIGR01272       231 Y-VAMWFVLALGLFNSIMFPTIFSLALNALGRHT-SQGSGILC----LAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY  304 (310)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhHHHHH----HHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            2 23345668889999999998888888777643 44555542    234899999999999999999999888655443


Q ss_pred             H
Q 013568          306 L  306 (440)
Q Consensus       306 ~  306 (440)
                      +
T Consensus       305 ~  305 (310)
T TIGR01272       305 L  305 (310)
T ss_pred             H
Confidence            3

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.91  E-value=2.6e-08  Score=100.32  Aligned_cols=178  Identities=17%  Similarity=0.235  Sum_probs=142.0

Q ss_pred             CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568          131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      .++.++.+++...+..+. ......++.+.++ +|++..+.+.+.++..+...+ .++.|+++|+.   ..+++.+..++
T Consensus       296 ~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~---~~~~~~~~~~~  371 (509)
T KOG2504|consen  296 KDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP---GIRALVLFLLT  371 (509)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc---ccchHHHHHHH
Confidence            344566666655555555 4555677788876 799999999999999998888 78899999984   11344455556


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          209 GLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      .++.+++.+.+. +.+++..+...-.+.|+..+.........+.|+...++-..+.++..+..+   ++.++||.+.|++
T Consensus       372 ll~~gl~~~~~p-~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~g---i~~l~gpPiag~~  447 (509)
T KOG2504|consen  372 LLIAGLARLFLP-FATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQG---IGALVGPPIAGLL  447 (509)
T ss_pred             HHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhH---HHHHcCcccceee
Confidence            666666665555 678888888888999999999888888899999999999999999988888   9999999999999


Q ss_pred             hhccc-hHHHHHHHHHHHHHHHHhheeec
Q 013568          289 VDAYG-VRFVFGVTALLPLITSGVAVLVK  316 (440)
Q Consensus       289 ~~~~g-w~~~f~i~~~~~~~~~~~~~~~~  316 (440)
                      .+..| |...|+..++..+++...+++.+
T Consensus       448 ~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  448 YDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            88887 99999999998888887777666

>TIGR00898 2A0119 cation transport protein

Probab=98.90  E-value=3.2e-08  Score=100.82  Aligned_cols=145  Identities=17%  Similarity=0.123  Sum_probs=101.7

Q ss_pred             cCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHH
Q 013568          163 LHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVES-KYSAALSILLGSLSV  240 (440)
Q Consensus       163 ~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~  240 (440)
                      ++.+......+   ..+.... .++.++++||   +|  ||+.+.++.++.+++.+++...... .....+..++.+++.
T Consensus       353 ~~~~~~~~~~~---~~~~~i~~~~~~~~l~dr---~g--rr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  424 (505)
T TIGR00898       353 LGGNIYLDLFI---SGLVELPAKLITLLLIDR---LG--RRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGI  424 (505)
T ss_pred             cCCChHHHHHH---HHHHHHHHHHHHHHHHHH---hC--CHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            45554333333   2333333 5567999999   45  7777777777766666655533322 134445556666777


Q ss_pred             HhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhheeeccccc
Q 013568          241 AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQV  320 (440)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~  320 (440)
                      +...+....+..|.+|.+.|+.+.++.+....   +|.+++|.+.+ + ...++...+++.+++.++..+..+++||++.
T Consensus       425 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~---ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~  499 (505)
T TIGR00898       425 TSAFQMVYLYTAELYPTVVRNLGVGVCSTMAR---VGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETKG  499 (505)
T ss_pred             HHHHHHHHHHhcccccHHHHhhhHhHHHHHHH---HHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence            77777888999999999999999888887766   99999999998 4 4466778888888887777777778888654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.86  E-value=7.4e-08  Score=95.36  Aligned_cols=178  Identities=13%  Similarity=0.059  Sum_probs=108.2

Q ss_pred             ccCCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhh
Q 013568          129 VDLSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLV  206 (440)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~  206 (440)
                      ..++++.|.+++.|++..-. ..+..++|.|+++.++  .........+..+...+ .|++|+++||   +|  +++++.
T Consensus       248 vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADR---iG--~~~vl~  320 (462)
T PRK15034        248 VLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDK---FG--GVRVTL  320 (462)
T ss_pred             HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHh---cC--chHHHH
Confidence            34556788888888876655 3456688999888653  22222222223333344 8999999999   45  556666


Q ss_pred             HHHHHHHHHHHHH-Hhhh----chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcc------c------------ccccc
Q 013568          207 LSGLLGALSWSLM-ATIV----ESKYSAALSILLGSLSVAFSDVVVDSMVVERARG------E------------SQSVS  263 (440)
Q Consensus       207 ~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~------------~r~~~  263 (440)
                      ++.+...++...+ ....    .+.....+..+...++.|........++.+++|+      +            .|...
T Consensus       321 ~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (462)
T PRK15034        321 INFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTET  400 (462)
T ss_pred             HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHH
Confidence            6655555443322 2122    1334444444444455566666777788888874      1            01123


Q ss_pred             hhhhHHhhhhhhhHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHhhe
Q 013568          264 GSLQSLCWGSSAFGGIVSSYFSGSMVDAYG-VRFVFGVTALLPLITSGVAV  313 (440)
Q Consensus       264 ~~~~~~~~~~~~~g~~ig~~i~g~l~~~~g-w~~~f~i~~~~~~~~~~~~~  313 (440)
                      .+..++....+.+|+++-|.+.|...+..| +...|+...+..+++.++.+
T Consensus       401 g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        401 AAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            344444445555888899988888776654 88888888888877776544

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.86  E-value=2e-07  Score=88.78  Aligned_cols=156  Identities=16%  Similarity=0.123  Sum_probs=121.8

Q ss_pred             HHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 013568          155 VNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSI  233 (440)
Q Consensus       155 l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (440)
                      ...|-+.++|++..+..++.....+..++ ..++|++.||   +|  -|++++.+.++..+.++... +........++-
T Consensus       275 ~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r---fg--~k~vl~~~lvi~~~~~~~~~-~~~~~~~f~i~g  348 (438)
T COG2270         275 GGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER---FG--SKPVLMIGLVILSIAALYLI-FLEGELDFWILG  348 (438)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--CceeehHHHHHHHHHHHHHH-HccccHHHHHHH
Confidence            34455656999999998876666666565 6788999998   45  55677777666655544444 445555566677


Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHhh
Q 013568          234 LLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG-VRFVFGVTALLPLITSGVA  312 (440)
Q Consensus       234 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~g-w~~~f~i~~~~~~~~~~~~  312 (440)
                      ++.|+..|..+....++..++.|+++-++..+++++..-   .+.++||...+.+.+..| -|..+....++.++.+++.
T Consensus       349 ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgr---a~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         349 LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGR---AASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhh---HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence            889999999999999999999999999999999998877   999999999999887655 6777777777777777777


Q ss_pred             eeecccc
Q 013568          313 VLVKEQQ  319 (440)
Q Consensus       313 ~~~~e~~  319 (440)
                      +++|++.
T Consensus       426 ~~v~~~~  432 (438)
T COG2270         426 LRVKVPG  432 (438)
T ss_pred             EeecCCC
Confidence            7887763

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.86  E-value=1.5e-07  Score=87.73  Aligned_cols=173  Identities=18%  Similarity=0.155  Sum_probs=126.3

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      ++..|.+.+.+-.+... +....|+|.++.| .|+|..+.|++.++..+.... +...-.+.+|.    .++|+..+...
T Consensus       207 ~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~----~n~r~~~~~~~  281 (395)
T COG2807         207 SPLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRS----KNQRPLVVLAL  281 (395)
T ss_pred             CchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHh----cccchHHHHHH
Confidence            34556566555566665 7888899999999 599999999998888877666 45555666663    26788888877


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhh
Q 013568          210 LLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV  289 (440)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~  289 (440)
                      ....++.+.+. +.+.... +...++.|+|.+...+..-.++.+-.++.++  +..+.++..+.+++=..+||.+.|++-
T Consensus       282 ~~~l~G~~G~~-~~P~~~~-~lw~~llG~G~G~~F~laL~li~~rs~~a~~--Aa~LSgmaQg~GYllAa~GP~l~G~lh  357 (395)
T COG2807         282 LLMLVGLVGLL-LAPGQLP-ILWALLLGLGQGGAFPLALTLILLRSSDAAI--AAALSGMAQGVGYLLAAFGPWLFGFLH  357 (395)
T ss_pred             HHHHHHHHHHH-HhhhhHH-HHHHHHHhCccchHHHHHHHHHHhhcCChHH--HHHHHHHhhhhhHHHHhhhhhhHhHHH
Confidence            78888877776 3333222 2225899999999888888898888766543  445666677766677888999999999


Q ss_pred             hccc-hHHHHHHHHHHHHHHHHhhe
Q 013568          290 DAYG-VRFVFGVTALLPLITSGVAV  313 (440)
Q Consensus       290 ~~~g-w~~~f~i~~~~~~~~~~~~~  313 (440)
                      |..| |+...+..+...++..+.-+
T Consensus       358 Da~gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         358 DATGSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             HhcCChHHHHHHHHHHHHHHHHHHh
Confidence            8764 99888887776666655444

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.84  E-value=2.5e-07  Score=95.77  Aligned_cols=157  Identities=15%  Similarity=0.164  Sum_probs=117.9

Q ss_pred             HHHHHHHHHhcCCChhhhHHHHHhh-hhhHHHHhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhch------
Q 013568          153 LAVNFYLKDDLHLDPAETAVISGFS-SLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVES------  225 (440)
Q Consensus       153 ~~l~~~l~~~~g~s~~~~g~~~s~~-~l~~~~~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~------  225 (440)
                      ..+..|+.+.+|.+.+.+..+...+ .+.+....++|+++|++  +|  |++.++++.++..++..+++..+.+      
T Consensus         8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~--lG--~~~tIl~~~ii~~lG~~llai~a~~~~~~~~   83 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGW--LG--KFKTILYLSIVYVVGHALLSFGAIPSSGHPL   83 (654)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hh--hHHHHHHHHHHHHHHHHHHHhccCcccccch
Confidence            3455566666899988877665554 34455566889999996  77  6666667767777776666522111      


Q ss_pred             -hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhcc-------chHHH
Q 013568          226 -KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY-------GVRFV  297 (440)
Q Consensus       226 -~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~-------gw~~~  297 (440)
                       ....+++..+.++|.++.-+...+...|.++++++.+..+++++.+.+.|+|.++++.+.+++.+.+       +|...
T Consensus        84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~a  163 (654)
T TIGR00926        84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLA  163 (654)
T ss_pred             HHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHH
Confidence             1235567788889999999999999999998776666788899999999999999999999987443       69999


Q ss_pred             HHHHHHHHHHHHHhhe
Q 013568          298 FGVTALLPLITSGVAV  313 (440)
Q Consensus       298 f~i~~~~~~~~~~~~~  313 (440)
                      |.+.+++.++++++..
T Consensus       164 F~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       164 FGVPAILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999988887766543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.83  E-value=1.5e-07  Score=91.99  Aligned_cols=160  Identities=13%  Similarity=0.072  Sum_probs=98.7

Q ss_pred             ccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      ++++...+.+...... .......|.++++++|.++.+.+++.+...++..+ +++.|++.||   +|  +|+.+..+..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~---~~--~~~~~~~~~~  280 (385)
T TIGR00710       206 KMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK---WG--AKSLLRMGLI  280 (385)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--HHHHHHHHHH
Confidence            3444444333332222 34445667778877899999999988888877776 7888999999   44  5555555555


Q ss_pred             HHHHHHHHHHhhh----chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHH
Q 013568          211 LGALSWSLMATIV----ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG  286 (440)
Q Consensus       211 ~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g  286 (440)
                      +..++.+.+....    .....+++..++.|++.+...+.......|..| ++++++.++.+....  .+|.+.++.++ 
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~--~~g~i~~~~~~-  356 (385)
T TIGR00710       281 LFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRL--VLGAIVGYLVS-  356 (385)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHH--HHHHHHHHHHH-
Confidence            5555444433111    223344455677888888877777788888776 567877777664443  14555555544 


Q ss_pred             HhhhccchHHHHHHH
Q 013568          287 SMVDAYGVRFVFGVT  301 (440)
Q Consensus       287 ~l~~~~gw~~~f~i~  301 (440)
                      .+.+..+|...+...
T Consensus       357 ~~~~~~~~~~~~~~~  371 (385)
T TIGR00710       357 LIHGNTAWPMSLSCL  371 (385)
T ss_pred             hccccChHHHHHHHH
Confidence            444444555544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.83  E-value=1.1e-07  Score=96.65  Aligned_cols=149  Identities=16%  Similarity=0.113  Sum_probs=112.2

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      .+....+..+..... ......+|.|+++.+|.++.+.|+......++..+ .++.|++.||   +|  +|+.+..+.++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r---~g--~~~~~~~g~~~  334 (495)
T PRK14995        260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR---LG--LRLVATGGMAL  334 (495)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--chHHHHHHHHH
Confidence            444444444444333 34455788899988899999999998888888777 7889999999   45  66677777766


Q ss_pred             HHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhh
Q 013568          212 GALSWSLMATIV--ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV  289 (440)
Q Consensus       212 ~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~  289 (440)
                      ..++.+++....  .+.+...+..++.|++.+...+.....+.+..|+++++.+.++++....   +|..+|+.+.|.+.
T Consensus       335 ~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---lG~~~G~ai~g~i~  411 (495)
T PRK14995        335 SALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYE---LGAGLGIAIFGLLL  411 (495)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            666655444222  3444556677889999999888888888899999999999998888877   99999999999886


Q ss_pred             h
Q 013568          290 D  290 (440)
Q Consensus       290 ~  290 (440)
                      +
T Consensus       412 ~  412 (495)
T PRK14995        412 S  412 (495)
T ss_pred             H
Confidence            5

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.82  E-value=1.2e-07  Score=95.94  Aligned_cols=154  Identities=12%  Similarity=0.125  Sum_probs=113.7

Q ss_pred             ccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      +.++...+..+..++. ......+|.|+++.+|.+..+.+++.....++..+ .++.|++.||+   |  ||+.+.++..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~---~--~~~~~~~g~~  329 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI---D--PRKLVTIGLI  329 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---C--cHHHHHHHHH
Confidence            3444444444444443 34455788899888899999999998888887777 78889999994   4  6667777766


Q ss_pred             HHHHHHHHHHh-hh--chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHH
Q 013568          211 LGALSWSLMAT-IV--ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS  287 (440)
Q Consensus       211 ~~~~~~~~~~~-~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~  287 (440)
                      +..++...+.. ..  .+........++.|++.+...+.......+..|+++++.+.++.+....   +|+.+|+.+.+.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~g~~ig~~i~g~  406 (485)
T TIGR00711       330 LYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQ---LGGSIGTALITT  406 (485)
T ss_pred             HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            66666555441 11  2344556667888999988777777777888899999999998888777   999999999998


Q ss_pred             hhhccch
Q 013568          288 MVDAYGV  294 (440)
Q Consensus       288 l~~~~gw  294 (440)
                      +.++..+
T Consensus       407 ~~~~~~~  413 (485)
T TIGR00711       407 ILTNRTQ  413 (485)
T ss_pred             HHHHHHH
Confidence            8765433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.81  E-value=3.3e-07  Score=90.09  Aligned_cols=141  Identities=14%  Similarity=0.055  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHH
Q 013568          151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSA  229 (440)
Q Consensus       151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~  229 (440)
                      .....|.++++++|.+..+.+.+.+...++..+ .++.|++.||   +|  ||+.+..+..+..++.+.+. ...+....
T Consensus       222 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r---~g--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  295 (392)
T PRK10473        222 FVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI---FK--PRTLMLTSQVLFLAAGITLA-LSPSHAVS  295 (392)
T ss_pred             HHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--HHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            334556677777899999999888777777666 7788999999   45  66677777666666655555 33333333


Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHH
Q 013568          230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLP  305 (440)
Q Consensus       230 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~  305 (440)
                      +....+.+.+.+...+.  ....+..|.++|+   +..+....   ++..+|+.+++++.+++|+.....+.+.+.
T Consensus       296 ~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~---g~~~~~~~---~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~  363 (392)
T PRK10473        296 LFGITLICAGFSVGFGV--AMSQALGPFSLRA---GVASSTLG---IAQVCGSSLWIWLAAVLGISAWNMLIGILI  363 (392)
T ss_pred             HHHHHHHHHHHHHHhHH--HHHHHhccCcccc---cHHHHHHH---HHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            33333333333332222  2333444544443   34444444   788888999999888888776555555433

>PRK10133 L-fucose transporter; Provisional

Probab=98.79  E-value=3e-07  Score=91.86  Aligned_cols=149  Identities=13%  Similarity=0.049  Sum_probs=107.3

Q ss_pred             hHHHHHHHHH-HHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH
Q 013568          150 LARLAVNFYL-KDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY  227 (440)
Q Consensus       150 ~~~~~l~~~l-~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~  227 (440)
                      ....+++.|+ ++.+|+++.+.++....+.+++.+ .++.|++.||   +|  +|+.+..+.++..+...+.. +.++. 
T Consensus       276 ~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r---~g--~~~~l~~~~~~~~~~~~~~~-~~~~~-  348 (438)
T PRK10133        276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR---FA--PHKVLAAYALIAMALCLISA-FAGGH-  348 (438)
T ss_pred             HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--HHHHHHHHHHHHHHHHHHHH-HcCCh-
Confidence            3445677775 566899999999999999998888 6788999999   45  55566666555444433333 33332 


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccc-hHHHHHHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG-VRFVFGVTALLPL  306 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~g-w~~~f~i~~~~~~  306 (440)
                      ..+....+.|++.+...+...+...+..+++ .+.+.++... ..   +|+.++|.+.|.+.+..| -+..|++..++.+
T Consensus       349 ~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~---~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~  423 (438)
T PRK10133        349 VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TI---IGGGIVTPVMGFVSDAAGNIPTAELIPALCFA  423 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-Hh---ccchHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            3345667899999999999999998887664 4566666653 33   688889999999999887 7888887666555


Q ss_pred             HHHH
Q 013568          307 ITSG  310 (440)
Q Consensus       307 ~~~~  310 (440)
                      ...+
T Consensus       424 ~~~~  427 (438)
T PRK10133        424 VIFI  427 (438)
T ss_pred             HHHH
Confidence            4443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.77  E-value=2.3e-07  Score=92.50  Aligned_cols=154  Identities=16%  Similarity=0.233  Sum_probs=111.7

Q ss_pred             CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568          131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      .++.+..+...+++..+. .......+.|.++.+|.+ ...+.+..+..++..+ .|++++++||   +|  ||+.+..+
T Consensus       223 ~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r---~g--k~~~~~~~  296 (428)
T PF13347_consen  223 RNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR---FG--KKKVYIIG  296 (428)
T ss_pred             ccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH---cc--ceeehhhh
Confidence            345566666667766665 556666777777777766 4566666666666666 7899999999   45  66677777


Q ss_pred             HHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccc-------cccchhhhHHhhhhhhhHHHH
Q 013568          209 GLLGALSWSLMATIV-ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGES-------QSVSGSLQSLCWGSSAFGGIV  280 (440)
Q Consensus       209 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~~~~g~~i  280 (440)
                      .++.+++.+++.+.. ++.+..++..++.|++.+.......++++|..+.++       .|...+++++..-   +|..+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k---~~~~l  373 (428)
T PF13347_consen  297 LLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIK---IGQGL  373 (428)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhH---HHHHH
Confidence            777777777666444 577888888999999999999999999999987543       2344455554444   99999


Q ss_pred             HHHHHHHhhhccc
Q 013568          281 SSYFSGSMVDAYG  293 (440)
Q Consensus       281 g~~i~g~l~~~~g  293 (440)
                      ++.+.+.+.+..|
T Consensus       374 a~~i~g~~l~~~G  386 (428)
T PF13347_consen  374 AGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHHHHHHHhC
Confidence            9998888765444

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.76  E-value=3.3e-07  Score=88.87  Aligned_cols=183  Identities=11%  Similarity=0.116  Sum_probs=127.0

Q ss_pred             ccCCccHHHHHHHHHHHH-HhhhHHHHHHHHHHHhcC---CChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcch
Q 013568          129 VDLSPDNFAVAMVYFVQG-VLGLARLAVNFYLKDDLH---LDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRS  203 (440)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~g---~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~  203 (440)
                      ....+++|.+.+...... ....+....+.|.++.++   .+....|.+.++..+.=++ -.+..++.+|   +|  .|+
T Consensus       216 l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r---ig--~k~  290 (412)
T PF01306_consen  216 LFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR---IG--AKN  290 (412)
T ss_dssp             HTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHH
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh---cC--hHh
Confidence            344557776555444332 234555567777776433   2334566665555444444 3456888888   45  777


Q ss_pred             hhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhh-HHhhhhhhhHHHHHH
Q 013568          204 YLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQ-SLCWGSSAFGGIVSS  282 (440)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~~~~g~~ig~  282 (440)
                      .++++..++.+=+++++ +.++.+.+.+...+.++-.+.......-++.+.+|++..++...+. ++..+   +|.++.+
T Consensus       291 ~Lllag~i~~iRi~~~~-~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~---~~~~i~s  366 (412)
T PF01306_consen  291 LLLLAGVIMAIRIIGSG-FATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQ---IGIIILS  366 (412)
T ss_dssp             HHHHHHHHHHHHHHHHH-T--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHH---HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHH---HHHHHHh
Confidence            88888888888888888 7888889999999999999999999999999999988765544442 34444   9999999


Q ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHHHh-heeeccccc
Q 013568          283 YFSGSMVDAYGVRFVFGVTALLPLITSGV-AVLVKEQQV  320 (440)
Q Consensus       283 ~i~g~l~~~~gw~~~f~i~~~~~~~~~~~-~~~~~e~~~  320 (440)
                      .++|.+.++.|.+.+|++++.+.++..++ .+.++++++
T Consensus       367 ~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  367 PLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             hhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            99999999999999999999887766554 444554433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09848 glucuronide transporter; Provisional

Probab=98.76  E-value=1.8e-07  Score=93.74  Aligned_cols=156  Identities=13%  Similarity=0.118  Sum_probs=103.7

Q ss_pred             CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568          131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      .++.++.+.+..++.... .......+.|+++.+|.+....++......++..+ .+++++++||   +|  +|+.+.++
T Consensus       226 ~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r---~g--~~~~~~~g  300 (448)
T PRK09848        226 RNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR---IG--KKNTFLIG  300 (448)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--cHHHHHHH
Confidence            344555555544444443 34444566677777787665555444333454444 7889999999   45  66777777


Q ss_pred             HHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccc-------cccchhhhHHhhhhhhhHHHH
Q 013568          209 GLLGALSWSLMATIV-ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGES-------QSVSGSLQSLCWGSSAFGGIV  280 (440)
Q Consensus       209 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~~~~g~~i  280 (440)
                      .++.+++.+.+.... .+.+.+.+..++.|+|.+...+...++..|..+.++       +|...+++++...   +|..+
T Consensus       301 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~k---lg~ai  377 (448)
T PRK09848        301 ALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRK---CGQAI  377 (448)
T ss_pred             HHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHH---HHHHH
Confidence            777666655555222 245555666788899999999999999999987653       3666667776666   99999


Q ss_pred             HHHHHHHhhhccch
Q 013568          281 SSYFSGSMVDAYGV  294 (440)
Q Consensus       281 g~~i~g~l~~~~gw  294 (440)
                      |+.+.+.+.+..|+
T Consensus       378 g~~i~g~~l~~~G~  391 (448)
T PRK09848        378 GGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHcCC
Confidence            99999887755444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.75  E-value=6.6e-06  Score=80.76  Aligned_cols=289  Identities=16%  Similarity=0.121  Sum_probs=152.7

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH-
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL-  211 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~-  211 (440)
                      .+.+...++..... .+.....+.++.+-+.-+---.+.....-.+...+ +|..|.+.||.     .|.+.+-.+.+. 
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-----~Rl~~~~~~l~~Q   78 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-----PRLKVIRTSLVVQ   78 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-----cchhhHHHHHHHH
Confidence            34566677777776 47777778888775433322222222223333333 88999999994     455554443322 


Q ss_pred             ---HHHHHHHHHh-hh-ch-----hHHHHHHHH---HHHHHHHhhh-hhhhHHHHhhhc---ccccccchhhhHHhhhhh
Q 013568          212 ---GALSWSLMAT-IV-ES-----KYSAALSIL---LGSLSVAFSD-VVVDSMVVERAR---GESQSVSGSLQSLCWGSS  274 (440)
Q Consensus       212 ---~~~~~~~~~~-~~-~~-----~~~~~~~~~---l~g~~~~~~~-~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~  274 (440)
                         .++++.++.. +. +.     .+....+..   +.|....... ....+.=.||..   .++......+.+.+...-
T Consensus        79 n~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRID  158 (432)
T PF06963_consen   79 NLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRID  158 (432)
T ss_pred             HHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHH
Confidence               2222222110 11 11     112222221   2221111111 111111223321   222333344555555545


Q ss_pred             hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHh-hee-------eccccccCCCcCCCCCCC---------CCccc
Q 013568          275 AFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGV-AVL-------VKEQQVLGPSRRQNLPLG---------DPSFF  337 (440)
Q Consensus       275 ~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~-~~~-------~~e~~~~~~~~~~~~~~~---------~~~~~  337 (440)
                      .+.-+++|++.|.+.+..+......+.++..++..++ +++       .|+-..+++.+..+...+         .....
T Consensus       159 L~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (432)
T PF06963_consen  159 LFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSIL  238 (432)
T ss_pred             HHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHH
Confidence            5889999999999999899998888888877776653 222       121111111000000000         00011


Q ss_pred             hhhHHHH----HHHHHHhcCcchhhhHHHHHhhhccccccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 013568          338 ESSKQNM----FQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFL  413 (440)
Q Consensus       338 ~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~  413 (440)
                      +...+..    +..+..+++|.+...+.+.++|...-+....+..|. ...|+++..+|.+-....+..+.|.++++++.
T Consensus       239 ~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~TVLsf~~lmt~yl-~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~  317 (432)
T PF06963_consen  239 KRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFTVLSFGGLMTAYL-KSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLM  317 (432)
T ss_pred             HHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHHHhcCcHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111112    223334577776666666666665333344443333 24599999999999999999999999999999


Q ss_pred             ccCCchhHHHHHHHHH
Q 013568          414 KNVPLRKIFLANTIFG  429 (440)
Q Consensus       414 ~r~g~r~~l~~~~~~~  429 (440)
                      +|+|..+.-.++...-
T Consensus       318 ~riGlvr~G~~~l~~q  333 (432)
T PF06963_consen  318 KRIGLVRAGLWSLWWQ  333 (432)
T ss_pred             HHhcchhhHHHHHHHH
Confidence            9999877766655433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.74  E-value=5.6e-07  Score=88.61  Aligned_cols=151  Identities=15%  Similarity=0.031  Sum_probs=104.8

Q ss_pred             hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHH
Q 013568          150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYS  228 (440)
Q Consensus       150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~  228 (440)
                      .....++.++++.+|.+..+.|++.+...++..+ +++.+++.||   .+  +++.+..+. +..+....+. ..++.+.
T Consensus       223 ~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~---~~--~~~~~~~g~-~~~~~~~~~~-~~~~~~~  295 (393)
T PRK11195        223 TLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL---ET--VLRVLPAGI-LMGLVVLLMA-LQHSLLP  295 (393)
T ss_pred             HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC---Cc--ccchHHHHH-HHHHHHHHHH-HHhHHHH
Confidence            3344566778888999999999999888888877 6777999997   34  455555553 3333333333 3455555


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHhhhcccc-cccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          229 AALSILLGSLSVAFSDVVVDSMVVERARGES-QSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       229 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      .+++.++.|++.+...+...+.+.+..|++. +|+..++.+....   +|..++..+.+.+ ..+|-+..+++.++..++
T Consensus       296 ~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  371 (393)
T PRK11195        296 AYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNEN---LAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLV  371 (393)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHH---HHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHH
Confidence            6667778899888877788888888765554 6777777776666   9999999888855 567766666665544444


Q ss_pred             HHHh
Q 013568          308 TSGV  311 (440)
Q Consensus       308 ~~~~  311 (440)
                      .+.+
T Consensus       372 ~~~~  375 (393)
T PRK11195        372 ALAM  375 (393)
T ss_pred             HHHH
Confidence            4443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.67  E-value=1.6e-06  Score=86.01  Aligned_cols=279  Identities=13%  Similarity=0.027  Sum_probs=149.4

Q ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC-----ChhhhHHHHHhhhhhHHH--HhhhhhhccccCcCCCCcchhhh
Q 013568          134 DNFAVAMVYFVQGVLGLARLAVNFYLKDDLHL-----DPAETAVISGFSSLPWLI--KPLYGFISDSLPLFGYRRRSYLV  206 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~-----s~~~~g~~~s~~~l~~~~--~~~~g~l~Dr~~~~G~~rr~~l~  206 (440)
                      +++...+.+|+..+.+    .+.--++|.+.+     +.+.+.++.+...++.++  .++.+++++|+     +|++++-
T Consensus         8 k~~~~~l~fF~il~~Y----~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-----~~~~lf~   78 (472)
T TIGR00769         8 KFLPLFLMFFCILFNY----TILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-----SKEALFY   78 (472)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHhHH
Confidence            3444455555544442    222236777766     336788888888887766  68899999994     3556655


Q ss_pred             HHHHHHHHHHHHHHhhh----ch--------------------------hHHHHHHHHHHHHHHHhhhh-hhhHHHHhhh
Q 013568          207 LSGLLGALSWSLMATIV----ES--------------------------KYSAALSILLGSLSVAFSDV-VVDSMVVERA  255 (440)
Q Consensus       207 ~~~~~~~~~~~~~~~~~----~~--------------------------~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~  255 (440)
                      .....+.+.+.+++++-    +.                          .|...+..+..-+-...... ..++++.|++
T Consensus        79 ~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~  158 (472)
T TIGR00769        79 TVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQIT  158 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            54445544444444221    00                          11122333333444444444 8899999999


Q ss_pred             cccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc-------c-chH----HHHHHHHHHHHHHHHhheeeccccccCC
Q 013568          256 RGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA-------Y-GVR----FVFGVTALLPLITSGVAVLVKEQQVLGP  323 (440)
Q Consensus       256 ~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~-------~-gw~----~~f~i~~~~~~~~~~~~~~~~e~~~~~~  323 (440)
                      +.++-.+..++.+.+..   +|.++|+.+..++.+.       . .|.    ..+.+.+++..+...+..++.+....++
T Consensus       159 t~~qakRfy~l~~~gan---lg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~  235 (472)
T TIGR00769       159 TIDEAKRFYALFGLGAN---VALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDP  235 (472)
T ss_pred             CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence            99887766666665555   8888888888877621       1 242    2333333333333333333322221111


Q ss_pred             CcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccccccceeeeeee---ccCCCChhh----HHHHHH
Q 013568          324 SRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTT---NELGFTPEF----LGRVKF  396 (440)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~g~s~~~----~g~~~~  396 (440)
                      ...+.++..++  .+........++.++++|.++.+++++++|+..   .+.....+.   ....-++.+    .|.+..
T Consensus       236 ~~~~~~~~~~k--~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~---~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~  310 (472)
T TIGR00769       236 RSYNPALKEKK--VKPKMSTMESLKFLVSSPYILDLALLVIAYGIS---INLVEVTWKSKLKAQYPSPNEYSAFMGDFST  310 (472)
T ss_pred             cccchhhcccc--CCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            10000000000  001112234456678899888888888888762   222211111   111123322    344455


Q ss_pred             HHHHHHHHHHHHHHHhhccCCchhHHHHHHHHH
Q 013568          397 VTSVASLLGVGLYNGFLKNVPLRKIFLANTIFG  429 (440)
Q Consensus       397 ~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~  429 (440)
                      ..++..++..++.+++.+|+|.+....+.-++.
T Consensus       311 ~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~  343 (472)
T TIGR00769       311 WTGVVSVTMMLLSGNVIRKYGWLTAALITPLVM  343 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            566666666677799999999886665544333

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.62  E-value=1.6e-07  Score=90.47  Aligned_cols=137  Identities=19%  Similarity=0.242  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhcCCC-hhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHH
Q 013568          138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLD-PAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGAL  214 (440)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s-~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~  214 (440)
                      +....+...+. .....++|.|+++++|.+ ..+.+.+.++..+...+ .++.|+++||+   |  +++.+........+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~--~~~~~~~~~~~~~~  285 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF---G--RRRRLLIAILLLIL  285 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---T--CHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C--cHHHHHHHHHHHHH
Confidence            33333444333 456778888867778999 78889888888777766 78889999994   4  44444444444444


Q ss_pred             HHHHHHhhh--chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHH
Q 013568          215 SWSLMATIV--ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSS  282 (440)
Q Consensus       215 ~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~  282 (440)
                      ..+.+....  ++....++..++.|++.+...+....++.|..|++++++..++.+....   +|..+||
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~---~~~~igP  352 (352)
T PF07690_consen  286 GALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGS---LGGIIGP  352 (352)
T ss_dssp             HHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHH---HHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---HHHHHCC
Confidence            433333122  2345566677889999999999999999999999999999998887777   8888887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=1.6e-07  Score=88.50  Aligned_cols=161  Identities=17%  Similarity=0.201  Sum_probs=116.4

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhH-HHHHHHHHHHHHHhhhchh
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVL-SGLLGALSWSLMATIVESK  226 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~-~~~~~~~~~~~~~~~~~~~  226 (440)
                      ++..+.++.++.|.+..+.-++|+.+.-..+.|.+ .+++|.++||+   + +-|+.+.. +.+...++..... +.+++
T Consensus       287 afLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~---~-~~~wl~~~~gl~~~G~~~~~iP-~~~~~  361 (464)
T KOG3764|consen  287 AFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY---P-HLRWLLSLGGLATVGVSSGPIP-FATSI  361 (464)
T ss_pred             HHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc---C-chhHHHHHHHHHHHHHHhchhH-hhhhH
Confidence            67777888888887875555888877777888888 78999999994   4 23344433 3333334444444 66888


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccc---cchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHH
Q 013568          227 YSAALSILLGSLSVAFSDVVVDSMVVERARGESQS---VSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTAL  303 (440)
Q Consensus       227 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~---~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~  303 (440)
                      .++++-++..+++.+..+.........+.+.++-.   ..+..+.++..+..+|..+||.++|.+++.+|++|...+.++
T Consensus       362 ~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~  441 (464)
T KOG3764|consen  362 AQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGI  441 (464)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHH
Confidence            88888888888888887776666666665554433   555666666555669999999999999999999999999888


Q ss_pred             HHHHHHHhhee
Q 013568          304 LPLITSGVAVL  314 (440)
Q Consensus       304 ~~~~~~~~~~~  314 (440)
                      ..++-.-+..+
T Consensus       442 ~n~iyapvl~l  452 (464)
T KOG3764|consen  442 LNLIYAPVLLL  452 (464)
T ss_pred             HHHHHHHHHHH
Confidence            87765544433

>PRK09669 putative symporter YagG; Provisional

Probab=98.57  E-value=8.3e-07  Score=88.91  Aligned_cols=158  Identities=12%  Similarity=-0.025  Sum_probs=89.8

Q ss_pred             CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568          131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      .++.++.++..++..... .........|.+..++ +....+.+.....++..+ .+++++++||   +|  ||+.+..+
T Consensus       227 ~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r---~g--k~~~~~~~  300 (444)
T PRK09669        227 GNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGK---FD--RVRAFKWT  300 (444)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--hHHHHHHH
Confidence            344555555555544443 2223223333333222 223333344444455445 5788999999   45  55555555


Q ss_pred             HHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccc--ccc--hhhhHHhhhhhhhHHHHHHH
Q 013568          209 GLLGALSWSLMATI-VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQ--SVS--GSLQSLCWGSSAFGGIVSSY  283 (440)
Q Consensus       209 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r--~~~--~~~~~~~~~~~~~g~~ig~~  283 (440)
                      .++..++...+... .++.+.+++..++.|++.+...+..+++++|..+.++.  |++  +..++....+..+|..+|+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~  380 (444)
T PRK09669        301 IVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGA  380 (444)
T ss_pred             HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHH
Confidence            54444332222212 34555566777889999999999999999999874331  221  12223333333499999999


Q ss_pred             HHHHhhhccch
Q 013568          284 FSGSMVDAYGV  294 (440)
Q Consensus       284 i~g~l~~~~gw  294 (440)
                      ++|++.+..|+
T Consensus       381 i~g~ll~~~Gy  391 (444)
T PRK09669        381 VVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHcCC
Confidence            99998876555

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.57  E-value=2.5e-06  Score=83.24  Aligned_cols=129  Identities=10%  Similarity=0.018  Sum_probs=76.3

Q ss_pred             hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHH---Hhhhch
Q 013568          150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLM---ATIVES  225 (440)
Q Consensus       150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~---~~~~~~  225 (440)
                      ....+.|.++.+.+|.+..+.+++.+...+...+ .++.|++.||   +|  ||+.+..+..+..+..+.+   .....+
T Consensus       212 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r---~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (377)
T PRK11102        212 SFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR---VG--ALNMLRFGLWIQFIMGIWLVVSALLDLG  286 (377)
T ss_pred             HHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4444567777777899999999998888887776 7888999999   45  6666665554433322221   111123


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHH
Q 013568          226 KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG  286 (440)
Q Consensus       226 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g  286 (440)
                      .+...++..+.+.+.+.........+.|..| +.++...++......  .+|..+++++++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~--~~g~~~g~~~~~  344 (377)
T PRK11102        287 FWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRF--GIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHH--HHHHHHHHHHHh
Confidence            3333333334444444444444555666655 667777666543211  266677776654

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.56  E-value=1.8e-05  Score=76.60  Aligned_cols=256  Identities=13%  Similarity=0.074  Sum_probs=150.5

Q ss_pred             HHHHHHHHHHh-cCCChhhhHH-HHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHH
Q 013568          152 RLAVNFYLKDD-LHLDPAETAV-ISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYS  228 (440)
Q Consensus       152 ~~~l~~~l~~~-~g~s~~~~g~-~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~  228 (440)
                      .+.+.+|+.+. .|++..++.- +.-+..-.+.. -.+...+.|.+     |.||++++..+...+..+++. +.++...
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-----~Ykpviil~~~~~i~t~~lll-~~~sv~~   96 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-----RYKPVIILQALSYIITWLLLL-FGTSVLA   96 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHH-HHCcHHH
Confidence            44566677664 7899888752 32222223333 45668999984     589999999888888877776 7788888


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh--ccchHHHHHHHHHHHH
Q 013568          229 AALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD--AYGVRFVFGVTALLPL  306 (440)
Q Consensus       229 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~--~~gw~~~f~i~~~~~~  306 (440)
                      +-+.-++.|++.+. ..+..+++-...++++-.++.+.......   +|..++.++|-.++.  ...++..+++......
T Consensus        97 mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l---~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~  172 (412)
T PF01770_consen   97 MQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATL---VGRFISSLLGQLLVSFGGVSYFQLNYISLASVS  172 (412)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            88899999998877 46777888878777766566555555555   777777777766654  3456777777666666


Q ss_pred             HHHHhheeecccccc----CCC---------cCCC-CCCCC-------------CccchhhHHHHHHHHHHhcCcchhhh
Q 013568          307 ITSGVAVLVKEQQVL----GPS---------RRQN-LPLGD-------------PSFFESSKQNMFQLWEAVKQPNVFLP  359 (440)
Q Consensus       307 ~~~~~~~~~~e~~~~----~~~---------~~~~-~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~~  359 (440)
                      +++++.+++|..++.    +..         +.+. .+..+             .......+..++++++..++|.++..
T Consensus       173 ~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~W  252 (412)
T PF01770_consen  173 LALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLW  252 (412)
T ss_pred             HHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHH
Confidence            666666677764421    000         0000 00000             00011223345667777788876555


Q ss_pred             HHHHHhhhccccccceeeeeee--ccC---CCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCch
Q 013568          360 TLFVFLWQATPHSDSAMFYFTT--NEL---GFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLR  419 (440)
Q Consensus       360 ~l~~~~~~~~~~~~~~~~~~~~--~~~---g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r  419 (440)
                      .++-.+..+.  ......|...  ++.   +-....-|.+-++..+.+.++.+..|++-.++.+.
T Consensus       253 SlWWa~atcg--y~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~  315 (412)
T PF01770_consen  253 SLWWAFATCG--YYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW  315 (412)
T ss_pred             HHHHHHHHhH--HHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH
Confidence            4332221110  0111111111  112   22233346666777777777788888875555443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK11043 putative transporter; Provisional

Probab=98.56  E-value=3.8e-06  Score=82.82  Aligned_cols=136  Identities=11%  Similarity=0.005  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHH---HHh-hhc
Q 013568          150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSL---MAT-IVE  224 (440)
Q Consensus       150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~---~~~-~~~  224 (440)
                      ....+.|.++++ +|.+..+.|+......++..+ +.+.+++.||   +|  +|+.+....+...++.+.   ... ..+
T Consensus       221 ~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (401)
T PRK11043        221 AWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQK---WG--GEQLLPWLLVLFAVSVIAIWLASLLSHP  294 (401)
T ss_pred             HHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            344567777766 799999999876666666655 5567889998   34  444333333332222221   111 123


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchH
Q 013568          225 SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVR  295 (440)
Q Consensus       225 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~  295 (440)
                      +....++...+.|++.+...+...+...+..| ++++++.++++....   .+..+++.+.|.+.+.....
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~---~~~~~~~~~~g~l~~~~~~~  361 (401)
T PRK11043        295 SLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQL---GLCFLASLLVSALISTPLLT  361 (401)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHH---HHHHHHHHHHHHccCCChhH
Confidence            34444555667778887777777777777765 568888888886655   78888888888887643333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.55  E-value=5.4e-06  Score=75.25  Aligned_cols=159  Identities=16%  Similarity=0.182  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHhcCCChhhhHHHHHhhhhhHHHHhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhh------ch
Q 013568          152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIV------ES  225 (440)
Q Consensus       152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~------~~  225 (440)
                      .....+.+++.+|+|.++...+.....++..++.+.|.+.|+   +|  .+.++.++.+...++...+....      .+
T Consensus        21 Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~---~g--p~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~   95 (250)
T PF06813_consen   21 FSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDR---FG--PWVVLLIGAVLGFVGYGLLWLAVSGRIPSLP   95 (250)
T ss_pred             hhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHh---cc--hHHHHHHHHHHHHHHHHHHHHHHhCccCccc
Confidence            335566678889999999999988888888789999999999   44  77788888888888876665222      24


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHH
Q 013568          226 KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLP  305 (440)
Q Consensus       226 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~  305 (440)
                      .+.+.+..++.|.+.+..+.+......+.+|+ +||.+.++.-...+   +++.+-..+...+.+.-.-...+.+.....
T Consensus        96 ~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~G---LSaai~t~i~~~~f~~~~~~fll~la~~~~  171 (250)
T PF06813_consen   96 VWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFG---LSAAIFTQIYSAFFGDDPSSFLLFLAVLPA  171 (250)
T ss_pred             hHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHH---hHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            45566666777777776666666667778875 78999998887777   777666655555544422334333333334


Q ss_pred             HHHHHhheeecccc
Q 013568          306 LITSGVAVLVKEQQ  319 (440)
Q Consensus       306 ~~~~~~~~~~~e~~  319 (440)
                      ++.++..++++..+
T Consensus       172 ~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  172 VVCLVAMFFVRPVP  185 (250)
T ss_pred             HHHHHHhhheeccC
Confidence            44444555555443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.55  E-value=1.4e-06  Score=84.55  Aligned_cols=130  Identities=15%  Similarity=0.171  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhh-hHHH-HhhhhhhccccCcCCCCcchhhhHHHHH
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSL-PWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL  211 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l-~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~  211 (440)
                      ++.+.+..+..... ......+++|+++ +|.+.++.+.+.++... +..+ .+++|+++||   +|  ||+.++.+.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r---~g--~~~~l~~~~~~  284 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP---LN--ILYALLLFGIV  284 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh---hh--HHHHHHHHHHH
Confidence            44444444444443 4566788899888 89999999988776653 4445 6788999999   45  66666666666


Q ss_pred             HHHHHHHHHhhh----------chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHh
Q 013568          212 GALSWSLMATIV----------ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLC  270 (440)
Q Consensus       212 ~~~~~~~~~~~~----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  270 (440)
                      ..+...+.....          ++.+.+..+.++.+++.+...+...+++.|.+|+++|++..++++..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  353 (356)
T TIGR00901       285 QALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSL  353 (356)
T ss_pred             HHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence            555544444222          23455667778889999999999999999999999999888877644

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.47  E-value=4.9e-06  Score=81.86  Aligned_cols=137  Identities=10%  Similarity=0.021  Sum_probs=88.3

Q ss_pred             hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhh-HHHHHHHHHHHHHHhh-hchh
Q 013568          150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLV-LSGLLGALSWSLMATI-VESK  226 (440)
Q Consensus       150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~-~~~~~~~~~~~~~~~~-~~~~  226 (440)
                      ......+.++++.+|.+..+.+++.....++..+ ..+.+++.||+   |  ++.... .......+........ ..+.
T Consensus       225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (394)
T PRK11652        225 VFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF---S--TLMWQSVICCLLAGLLMWIPGWFGVMNV  299 (394)
T ss_pred             HHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            3444566778887899999999887766666665 56778888873   2  222221 1111111111111111 2244


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchH
Q 013568          227 YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVR  295 (440)
Q Consensus       227 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~  295 (440)
                      +.+.+..++.+++.+...+....+..|..|+ +++...++.+....   +|..+++.+++.+.....+.
T Consensus       300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~---lg~~~~~~~~~~~~~~~~~~  364 (394)
T PRK11652        300 WTLLVPAALFFFGAGMLFPLATSGAMEPFPY-LAGTAGALLGGLQN---IGSGLAALLSAMLPQTGQFS  364 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHH---HHHHHHHHHHHHccCCchHH
Confidence            5566677888888888888888888888874 56777777776655   99999999998876554333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.45  E-value=5.4e-06  Score=83.66  Aligned_cols=156  Identities=17%  Similarity=0.166  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHhcCCChhh----hHHHHHhhhhhHHH-Hhhhh----hhccccCcCCCCcchhh--hHHHHHHHHHHHH
Q 013568          150 LARLAVNFYLKDDLHLDPAE----TAVISGFSSLPWLI-KPLYG----FISDSLPLFGYRRRSYL--VLSGLLGALSWSL  218 (440)
Q Consensus       150 ~~~~~l~~~l~~~~g~s~~~----~g~~~s~~~l~~~~-~~~~g----~l~Dr~~~~G~~rr~~l--~~~~~~~~~~~~~  218 (440)
                      -..+.++.+.++..+.+...    .+++.++..+...+ +|+..    ++.||-  .  +.+...  .++.++..++...
T Consensus       290 Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~--~--~~~~~~k~~~G~~l~~~~~~~  365 (475)
T TIGR00924       290 QMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKG--K--DPTTPLKFTLGMLFCGASFLT  365 (475)
T ss_pred             HhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC--C--CCCcHHHHHHHHHHHHHHHHH
Confidence            33444566665543433222    55666666655544 66544    455541  1  123333  5666777666655


Q ss_pred             HHhh--------hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh
Q 013568          219 MATI--------VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD  290 (440)
Q Consensus       219 ~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~  290 (440)
                      ++..        ..+.+.+++..++.++|.....+...+++.+..|++.||++++++.....   +|..+++.+......
T Consensus       366 ~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~---~g~~l~~~~~~~~~~  442 (475)
T TIGR00924       366 FAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQA---MGSLLGGYLATFGAV  442 (475)
T ss_pred             HHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence            5421        35778888999999999999999999999999999999999999988887   999999888887776


Q ss_pred             ccchHHHHHHHHHHHHHHHHhh
Q 013568          291 AYGVRFVFGVTALLPLITSGVA  312 (440)
Q Consensus       291 ~~gw~~~f~i~~~~~~~~~~~~  312 (440)
                      ..+|.+.|...++..++..++.
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~  464 (475)
T TIGR00924       443 PQGVTGVFGKIGLVTLLVGVVM  464 (475)
T ss_pred             ccchhhHHHHHHHHHHHHHHHH
Confidence            6788888888887766655543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.44  E-value=2.4e-06  Score=79.79  Aligned_cols=124  Identities=15%  Similarity=0.115  Sum_probs=90.6

Q ss_pred             hhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchh
Q 013568          186 LYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGS  265 (440)
Q Consensus       186 ~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~  265 (440)
                      +.+++.||   +|  ||+.|.++.+++.++.+++. .+.+.....+..+..-++.+....+.+.+..|++|...|+.+.+
T Consensus       400 It~~iver---lG--RKkTMal~l~~f~iflfll~-~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvG  473 (528)
T KOG0253|consen  400 ITGVIVER---LG--RKKTMALSLILFGIFLFLLT-TCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVG  473 (528)
T ss_pred             HHHHHHHH---hc--chhHHHHHHHHHHHHHHHHH-HhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchh
Confidence            55999999   56  89999999888888877766 34433344444455556666666688899999999999999999


Q ss_pred             hhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhheeeccccc
Q 013568          266 LQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQV  320 (440)
Q Consensus       266 ~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~  320 (440)
                      ..+.+..   +|+++.|+++  +.....-..+..+.+.+.+++.+..+++|-+++
T Consensus       474 tcSsmaR---IggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtk  523 (528)
T KOG0253|consen  474 TCSSMAR---IGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETK  523 (528)
T ss_pred             hhhhHHh---hhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccC
Confidence            8888777   9999999998  333333344455556666677777777775543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.40  E-value=1.1e-05  Score=81.44  Aligned_cols=154  Identities=14%  Similarity=0.131  Sum_probs=93.2

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      ++.++.+...++..... .......+.|.+. ..-+....+++.++..++..+ .+++++++||   +|  ||+.+.++.
T Consensus       230 n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y-~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r---~g--kk~~~~~~~  303 (473)
T PRK10429        230 NDQLSCLLGMALAYNIASNIINGFAIYYFTY-VIGDADLFPYYLSYAGAANLVTLILFPRLVKS---LS--RRILWAGAS  303 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhheeeEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--cHHHHHHHH
Confidence            34455555555544444 3333344434443 333455566666555566555 7888999999   45  666666655


Q ss_pred             HHHHHHHHHHHh----hhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccc--c-----ccchhhhHHhhhhhhhHH
Q 013568          210 LLGALSWSLMAT----IVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGES--Q-----SVSGSLQSLCWGSSAFGG  278 (440)
Q Consensus       210 ~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--r-----~~~~~~~~~~~~~~~~g~  278 (440)
                      ++.+++.+.+..    ..++.+.+++..++.|++.+...+...++++|..+.++  .     |...+..++..-   +|.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K---~~~  380 (473)
T PRK10429        304 IFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVK---GGS  380 (473)
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHH---HHH
Confidence            554444333321    12344555666678889999888899999999976432  2     223444444444   899


Q ss_pred             HHHHHHHHHhhhccch
Q 013568          279 IVSSYFSGSMVDAYGV  294 (440)
Q Consensus       279 ~ig~~i~g~l~~~~gw  294 (440)
                      .+|+.+.|++.+..|+
T Consensus       381 al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        381 AFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999988765443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.37  E-value=3.4e-06  Score=81.90  Aligned_cols=133  Identities=18%  Similarity=0.113  Sum_probs=84.1

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      +++++.+.+.++..... .....+.+.|+++.+|.+..+.+++.++..+...+ .+++|+++||   +|  ||+.+..+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r---~g--~~~~~~~~~  298 (366)
T TIGR00886       224 DRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR---LG--GARKLLMSF  298 (366)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh---hc--cchhHHHHH
Confidence            34555555555444333 45566788899888999999999888777777666 7788999999   45  444444443


Q ss_pred             HHHHHHHHHHHhh-hc--hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHh
Q 013568          210 LLGALSWSLMATI-VE--SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLC  270 (440)
Q Consensus       210 ~~~~~~~~~~~~~-~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  270 (440)
                      .....+..++... .+  +....++..++.+++.+.......+++.+..| ++++...++.+..
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~  361 (366)
T TIGR00886       299 LGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAI  361 (366)
T ss_pred             HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHh
Confidence            3443433333312 22  44444555566666666666677788888887 4667666665543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.33  E-value=2.8e-05  Score=74.01  Aligned_cols=147  Identities=18%  Similarity=0.258  Sum_probs=107.0

Q ss_pred             hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH
Q 013568          149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY  227 (440)
Q Consensus       149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~  227 (440)
                      ....++++.|+.+..|++..+.+...+.+..+..+ ..+..++..|+     +..+++.+..+...+.++..+ +.++. 
T Consensus       253 va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-----~~~k~Laf~a~~~ill~~~~~-l~~g~-  325 (422)
T COG0738         253 VAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-----KPEKYLAFYALIAILLLLAVA-LIGGV-  325 (422)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHHHH-HhcCh-
Confidence            57888999999987799999999998888888888 66777777785     344555555444444444444 45553 


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      ..+.+.++.|++.+...|...+...+..+ ++-....++..+ ..   +|+.+.|.+-|++.+..|-...+.+...++.+
T Consensus       326 v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~m-ai---vGGAiiP~l~G~i~d~~g~~~~~~~~pllc~l  400 (422)
T COG0738         326 VALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVM-AI---VGGAIIPPLQGVIADMFGIQLTFLIVPLLCYL  400 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeee-he---ecchHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            44556688999999999999999999988 333444444433 34   89999999999999999988887754444433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.32  E-value=2.7e-06  Score=83.31  Aligned_cols=165  Identities=16%  Similarity=0.148  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHH
Q 013568          138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS  215 (440)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~  215 (440)
                      +++..+..|.. +...+.+--+++| ++-.+...|.....-..+-++ -++.+++.+|   .|  +-.++.+++....+=
T Consensus       376 ff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k---iG--Hv~v~~lgLa~~~~R  449 (618)
T KOG3762|consen  376 FFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEK---IG--HVNVMYLGLACNVGR  449 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHH---hc--ccceeeehhhHHHHH
Confidence            33444444554 5666677677777 676677777443333344333 4566999998   45  777888888888777


Q ss_pred             HHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhH-HhhhhhhhHHHHHHHHHHHhhhccch
Q 013568          216 WSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQS-LCWGSSAFGGIVSSYFSGSMVDAYGV  294 (440)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~~g~~ig~~i~g~l~~~~gw  294 (440)
                      ++.+. ...|.|+.+-.-+++|+..+....+..+++++..|++.+..+.++.. ...+   +|--+|.+++|.+.+.+|-
T Consensus       450 f~~~S-~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~G---lG~g~GslIGG~~v~~fg~  525 (618)
T KOG3762|consen  450 FLYYS-YLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHG---LGKGLGSLIGGFVVERFGA  525 (618)
T ss_pred             HHHHH-HhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcc---cCcchhhhhhhhhheeehh
Confidence            77777 67888999999999999999999999999999999999888877664 4445   8889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 013568          295 RFVFGVTALLPLITSGVA  312 (440)
Q Consensus       295 ~~~f~i~~~~~~~~~~~~  312 (440)
                      +..|.+.++.+++.++..
T Consensus       526 ~ttf~~~giAcl~~l~~~  543 (618)
T KOG3762|consen  526 RTTFRIFGIACLVTLALF  543 (618)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999888777766543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.26  E-value=2.4e-05  Score=76.86  Aligned_cols=155  Identities=13%  Similarity=0.157  Sum_probs=104.1

Q ss_pred             CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568          131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      .++.+..+++.+++.... .+.......|.+..+|-+.....+.......+..+ .+++..+++|   +|  ||+.+.++
T Consensus       234 ~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~---~g--kk~~~~~~  308 (467)
T COG2211         234 KNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK---FG--KKKLFLIG  308 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH---hc--hHHHHHHH
Confidence            444555555555555555 45555566666655666666666655555555555 5788999998   56  77777788


Q ss_pred             HHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccc-------cccchhhhHHhhhhhhhHHHH
Q 013568          209 GLLGALSWSLMATIV-ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGES-------QSVSGSLQSLCWGSSAFGGIV  280 (440)
Q Consensus       209 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~~~~g~~i  280 (440)
                      .++.+++.+++.+.. ++...+++..++.+++.+...+..+++++|..+-+|       -|...+.+.+..=   +|..+
T Consensus       309 ~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K---~g~al  385 (467)
T COG2211         309 LLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRK---LGLAL  385 (467)
T ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHH---HHHHH
Confidence            888887777766444 356667777899999999999999999999886532       2222333333333   88888


Q ss_pred             HHHHHHHhhhccc
Q 013568          281 SSYFSGSMVDAYG  293 (440)
Q Consensus       281 g~~i~g~l~~~~g  293 (440)
                      +..+.|++....|
T Consensus       386 a~~~~g~~L~~~G  398 (467)
T COG2211         386 AGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHcC
Confidence            8888888765443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.24  E-value=5.5e-05  Score=74.92  Aligned_cols=147  Identities=10%  Similarity=0.034  Sum_probs=95.3

Q ss_pred             hHHHHHHHHHHHh-cCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH
Q 013568          150 LARLAVNFYLKDD-LHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY  227 (440)
Q Consensus       150 ~~~~~l~~~l~~~-~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~  227 (440)
                      .....++.|.++. .+.+....+...+.+...+.+ ..+.|++.||+   +  +|+++.+..++..++.++.. ..++..
T Consensus       250 ~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~---~--~~~~l~i~~~~~~~~~ll~~-~~~~~~  323 (410)
T TIGR00885       250 MCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL---A--AHKVLMAYAIIGMALCLGSI-FAGGHV  323 (410)
T ss_pred             HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C--HHHHHHHHHHHHHHHHHHHH-HcCChH
Confidence            4456788888653 134444444445555555556 67889999994   3  55566666556555555554 444433


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhcc------chHHHHHHH
Q 013568          228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY------GVRFVFGVT  301 (440)
Q Consensus       228 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~------gw~~~f~i~  301 (440)
                       .+.+.++.|++.+...+...++..+..+++... ..+... +..   +|+.++|.+.|++.|..      +.+..|++.
T Consensus       324 -~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~-~s~~l~-~~~---~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~  397 (410)
T TIGR00885       324 -GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKY-GAAGLV-MAI---IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP  397 (410)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hHHHHH-HHH---hccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence             356667788888888889999998888776532 222222 223   89999999999999854      477888876


Q ss_pred             HHHHHHH
Q 013568          302 ALLPLIT  308 (440)
Q Consensus       302 ~~~~~~~  308 (440)
                      .++.+..
T Consensus       398 ~~~~~~~  404 (410)
T TIGR00885       398 LLCFAVI  404 (410)
T ss_pred             HHHHHHH
Confidence            5554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.23  E-value=4.6e-05  Score=75.59  Aligned_cols=168  Identities=8%  Similarity=-0.087  Sum_probs=96.4

Q ss_pred             CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568          131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      .++.++...+.++..... .......|.++++.+|.+..+.++.......+..+ ..+.+.+.++.   + ++|.. ...
T Consensus       216 ~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~---~-~~~~~-~~~  290 (413)
T PRK15403        216 RNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP---T-EPRFI-WRA  290 (413)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC---C-chhHH-HHH
Confidence            345666555554444443 34555678888888899999999986656666555 55666655431   1 23332 111


Q ss_pred             HHHHHHHHHHHH----hhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHH
Q 013568          209 GLLGALSWSLMA----TIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYF  284 (440)
Q Consensus       209 ~~~~~~~~~~~~----~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i  284 (440)
                      ..+..++.+++.    ...++....++..++.++|.+...+......- .-.+..+|++.++.+....   .+..+++..
T Consensus       291 ~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~---~~~~~~~~~  366 (413)
T PRK15403        291 VPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVIL---MVMAVSVEI  366 (413)
T ss_pred             HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHH---HHHHHHHHH
Confidence            112222211111    11233333456667778887776665554221 2223356888888877666   778888888


Q ss_pred             HHHhhhccchHHHHHHHHHHHHHH
Q 013568          285 SGSMVDAYGVRFVFGVTALLPLIT  308 (440)
Q Consensus       285 ~g~l~~~~gw~~~f~i~~~~~~~~  308 (440)
                      ++++.++ +-++.|...+++..+.
T Consensus       367 ~g~~~~~-~~~~~~~~~~~~~~~~  389 (413)
T PRK15403        367 GRWLWFN-GGRLPFHLLAVVAGVI  389 (413)
T ss_pred             HHHHHHc-CCchHHHHHHHHHHHH
Confidence            8888664 5667776665554443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.22  E-value=0.00011  Score=68.33  Aligned_cols=149  Identities=25%  Similarity=0.274  Sum_probs=102.5

Q ss_pred             hHHHHHHHHHHHhcCCCh--hhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhc--
Q 013568          150 LARLAVNFYLKDDLHLDP--AETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVE--  224 (440)
Q Consensus       150 ~~~~~l~~~l~~~~g~s~--~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~--  224 (440)
                      ......+.+..+ ++.+.  ...++..+...++..+ .+++|.++||   +|  ||+.+..+.....++.+..+ +..  
T Consensus        20 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~g--~~~~~~~~~~~~~~~~~~~~-~~~~~   92 (338)
T COG0477          20 LLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR---YG--RRKVLIIGLLLFLLGTLLLA-LAPNV   92 (338)
T ss_pred             hHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc---cc--chHHHHHHHHHHHHHHHHHH-hCccc
Confidence            444455555555 45555  4788888888888877 5788999998   36  55566655544344433444 333  


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcc-cccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc--cchHHHHHHH
Q 013568          225 SKYSAALSILLGSLSVAFSDVVVDSMVVERARG-ESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA--YGVRFVFGVT  301 (440)
Q Consensus       225 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~--~gw~~~f~i~  301 (440)
                      ....+++.|++.|++.+...+...+++.|+.++ ++|+...+.....  ...+|.++++.+++.+...  .+|++.|.+.
T Consensus        93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (338)
T COG0477          93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLG--AGALGLALGPLLAGLLLGALLWGWRAAFLLA  170 (338)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            477788888889999999999999999999987 5566665655542  2237888888777776643  5799977776


Q ss_pred             HHHHHH
Q 013568          302 ALLPLI  307 (440)
Q Consensus       302 ~~~~~~  307 (440)
                      ......
T Consensus       171 ~~~~~~  176 (338)
T COG0477         171 ALLGLL  176 (338)
T ss_pred             HHHHHH
Confidence            655543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.21  E-value=7.4e-05  Score=71.62  Aligned_cols=157  Identities=18%  Similarity=0.222  Sum_probs=117.7

Q ss_pred             hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHHHh-hhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHH--hhhchh
Q 013568          150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKP-LYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMA--TIVESK  226 (440)
Q Consensus       150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~-~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~--~~~~~~  226 (440)
                      .-...+.||-.+.||++..+...+......+..++. +.|++..|  +.|  ++....++....++++.++.  ....+.
T Consensus       226 ~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~--~~~--~~~~a~~G~~~~~~~f~lii~a~~~~~~  301 (403)
T PF03209_consen  226 MQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR--RLG--KKRTAALGCLLGALAFALIILAGPLGSP  301 (403)
T ss_pred             hhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC--chHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            344456788889999999999999888888887755 55888775  244  44455556555555544433  233566


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc----------cchHH
Q 013568          227 YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA----------YGVRF  296 (440)
Q Consensus       227 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~----------~gw~~  296 (440)
                      +.+....++.|++.|......-+.+.|+..+++.|.+++.++....   ++..+|..++|.+.|.          .+|..
T Consensus       302 ~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA---~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~  378 (403)
T PF03209_consen  302 WLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQA---IARGLGTFLGGALRDLVRALFGNSPALAYGV  378 (403)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccCCcchHHHH
Confidence            7778888999999999999999999999999999999999988887   8888888888877542          35778


Q ss_pred             HHHHHHHHHHHHHHhhe
Q 013568          297 VFGVTALLPLITSGVAV  313 (440)
Q Consensus       297 ~f~i~~~~~~~~~~~~~  313 (440)
                      +|.+.+++.++++++..
T Consensus       379 VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  379 VFALEAVLLLAALVLLG  395 (403)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888777666655443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.21  E-value=3.1e-08  Score=99.29  Aligned_cols=130  Identities=21%  Similarity=0.130  Sum_probs=80.9

Q ss_pred             HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHH---hh-hch----hHHHHHHHHHHHHHHH-hhhhhhhHHHHhh
Q 013568          184 KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMA---TI-VES----KYSAALSILLGSLSVA-FSDVVVDSMVVER  254 (440)
Q Consensus       184 ~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~---~~-~~~----~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~  254 (440)
                      ..+...++||   +|  ||+.++.+..+.+++.+.++   .. .++    ....+++..+...+.+ ...+..+.+..|+
T Consensus       303 ~~~~~~~~~~---~G--Rr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~El  377 (451)
T PF00083_consen  303 TLLAIFLIDR---FG--RRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAEL  377 (451)
T ss_pred             cccccccccc---cc--cccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccc
Confidence            3455699999   45  77777777776666655443   11 111    1111222222222222 3345666888999


Q ss_pred             hcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH-hheeecccccc
Q 013568          255 ARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSG-VAVLVKEQQVL  321 (440)
Q Consensus       255 ~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~  321 (440)
                      +|.+.|+++.++......   ++.++++.+...+.+..+-...|++.+++.++..+ ..+++||++..
T Consensus       378 fPt~~R~~~~~~~~~~~~---i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~  442 (451)
T PF00083_consen  378 FPTKVRSTGIGLSYAVGR---IGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGK  442 (451)
T ss_pred             cccccccccccccccccc---ccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCC
Confidence            999999988887776655   88888888888777766634445555555555444 66789998763

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=98.15  E-value=6.7e-06  Score=82.83  Aligned_cols=149  Identities=14%  Similarity=0.091  Sum_probs=105.3

Q ss_pred             HhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhh---------chhHHHH
Q 013568          161 DDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIV---------ESKYSAA  230 (440)
Q Consensus       161 ~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~  230 (440)
                      +.+|.++.+.|++.....++..+ ..+.+.+.+|   ++  .|+.+.++.++.+++........         ++...++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~---~~--~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~  355 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT---FP--YRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVL  355 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh---CC--HHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeee
Confidence            45899999999998888777766 5667888777   44  67777777666666543321111         2223445


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccc-----hHHHHHHHHHH-
Q 013568          231 LSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG-----VRFVFGVTALL-  304 (440)
Q Consensus       231 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~g-----w~~~f~i~~~~-  304 (440)
                      ..-++.+++.+....+...++.+..|++.+++..++.+....   +|..+++.++|++.++.|     ++..+....+. 
T Consensus       356 ~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~---lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~  432 (468)
T TIGR00788       356 GDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILH---LGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHS  432 (468)
T ss_pred             ehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHH
Confidence            556788888888888999999999999999988888876666   999999999999988776     54444433333 


Q ss_pred             --HHHHHHhheeecc
Q 013568          305 --PLITSGVAVLVKE  317 (440)
Q Consensus       305 --~~~~~~~~~~~~e  317 (440)
                        .++.+...+++|+
T Consensus       433 ~~~l~~l~~~~llP~  447 (468)
T TIGR00788       433 LAPLLPLPLLHLLPR  447 (468)
T ss_pred             HHHHHHHHHHHhCCC
Confidence              3333334447785

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.12  E-value=7.9e-05  Score=66.83  Aligned_cols=255  Identities=15%  Similarity=0.119  Sum_probs=130.0

Q ss_pred             HHHHHhcCCChhhhHHHHHhhhhh-HHHHhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 013568          157 FYLKDDLHLDPAETAVISGFSSLP-WLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILL  235 (440)
Q Consensus       157 ~~l~~~~g~s~~~~g~~~s~~~l~-~~~~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  235 (440)
                      .|+.+.+|....++|.+.-...-. ..++-+.|-++|+   .|  ||+.-+.-.+...+++  +.-.++.+-.++++|.+
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk---qG--RKracvtycitYiLsC--iTKhSpqYkVLmVGR~L  133 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK---QG--RKRACVTYCITYILSC--ITKHSPQYKVLMVGRVL  133 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh---hc--cccceeeehHHHHHHH--HhhcCCceEEEeehhhh
Confidence            445566899999988763332222 2337788999998   56  5544444334444442  22134566678999999


Q ss_pred             HHHHHHhhhhhhhHH-HHhhhcccccccchh----hhHHhhhhh-hhHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHH
Q 013568          236 GSLSVAFSDVVVDSM-VVERARGESQSVSGS----LQSLCWGSS-AFGGIVSSYFSGSMVDAY--GVRFVFGVTALLPLI  307 (440)
Q Consensus       236 ~g~~~~~~~~~~~~~-~~~~~~~~~r~~~~~----~~~~~~~~~-~~g~~ig~~i~g~l~~~~--gw~~~f~i~~~~~~~  307 (440)
                      .|+..+....+.-++ +.|..+  +|+.-.-    .++-....+ -+-.+++.+.+-.+++.+  |.-.+|-..+.+..+
T Consensus       134 GGiaTsLLFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLai  211 (454)
T KOG4332|consen  134 GGIATSLLFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAI  211 (454)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence            999999877777665 445442  3332221    222122101 133445555555566654  445556555544444


Q ss_pred             HHHhhe-eeccccccCCCcCCCCCCCCCccchhhHHHHHH-HHHHhcCcchhhhHHHHHhhhccccccceeeeeeeccCC
Q 013568          308 TSGVAV-LVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ-LWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELG  385 (440)
Q Consensus       308 ~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g  385 (440)
                      +..+.+ -..|+..++. +.           +.....++. ...+..++++..+..+-.++-.   ....+.+..+..+.
T Consensus       212 gmAvil~~W~ENygdps-~~-----------kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~---smytFVFLWTPaLs  276 (454)
T KOG4332|consen  212 GMAVILSSWSENYGDPS-EN-----------KDLLTQFKGAARAIASDEKIALLGAIQSLFEG---SMYTFVFLWTPALS  276 (454)
T ss_pred             HHHHHHhhhhhccCChh-hh-----------HHHHHHhhHhHHHHhcchHHHHHHHHHHHHhh---hhheeeeeecccCC
Confidence            433332 2334322111 11           112222222 2233456665554433333322   12222122222232


Q ss_pred             CChhh--HHHHHHHHHHHHHHHHHHHHHhhccC--CchhHHHHHHHHHHHHhhh
Q 013568          386 FTPEF--LGRVKFVTSVASLLGVGLYNGFLKNV--PLRKIFLANTIFGTALGMT  435 (440)
Q Consensus       386 ~s~~~--~g~~~~~~~i~~~~g~~~~~~l~~r~--g~r~~l~~~~~~~~~~~~~  435 (440)
                      -++..  -|.+++.+..+.++|.-+..++..|-  .....+.+..++.++..++
T Consensus       277 pn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~L  330 (454)
T KOG4332|consen  277 PNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLL  330 (454)
T ss_pred             CCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHH
Confidence            22222  37888889999999999998887543  3344555544444444333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.09  E-value=7.9e-06  Score=81.81  Aligned_cols=177  Identities=16%  Similarity=0.152  Sum_probs=102.7

Q ss_pred             CCcccccccCCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCC
Q 013568          122 NGAKFFGVDLSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGY  199 (440)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~  199 (440)
                      ++..+......+++|..++.+++.... +.+..++|.++++..|.|..+.+.+...+.++.++ .++.|+++||..... 
T Consensus       262 ~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-  340 (495)
T KOG2533|consen  262 KWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-  340 (495)
T ss_pred             CHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-
Confidence            344455556777899999999988887 67888999999985579999999888878777777 678899999931001 


Q ss_pred             CcchhhhHHHHH-HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccccccc-chhhhHHhhhhhhhH
Q 013568          200 RRRSYLVLSGLL-GALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSV-SGSLQSLCWGSSAFG  277 (440)
Q Consensus       200 ~rr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~~g  277 (440)
                      ++|........+ ..++.+.+. ............+....+.....+.......+....+.|.. ..+....+.  ++.|
T Consensus       341 ~~~~~~~~~~~~~~~~g~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~--~s~~  417 (495)
T KOG2533|consen  341 ARRLLFIVFLCLYAIIGAISLL-AAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGT--GSAG  417 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcch--hHHH
Confidence            244443333333 333333333 22223333333333444444455566666666665544332 122222221  2233


Q ss_pred             HHHHHHHHHHhhhccchHHHHHHHH
Q 013568          278 GIVSSYFSGSMVDAYGVRFVFGVTA  302 (440)
Q Consensus       278 ~~ig~~i~g~l~~~~gw~~~f~i~~  302 (440)
                      .+.++..-+.....++|.+.|+...
T Consensus       418 ~~~~~~~~~~~ap~y~~~~~f~~~~  442 (495)
T KOG2533|consen  418 AISGQLFRSLDAPRYGWGAVFYMLV  442 (495)
T ss_pred             HhhhhhcccccCcchhhhhHHHHHH
Confidence            3334444444455678988885443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.07  E-value=9.7e-06  Score=78.08  Aligned_cols=127  Identities=16%  Similarity=0.077  Sum_probs=94.7

Q ss_pred             hhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhch-h---HHHHHHHHHHH-HHHHhhhhhhhHHHHhhhccccc
Q 013568          186 LYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVES-K---YSAALSILLGS-LSVAFSDVVVDSMVVERARGESQ  260 (440)
Q Consensus       186 ~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~r  260 (440)
                      +...++|+   .|  ||+..+.+.+++.+..+.++ ...+ .   ....++..+.. ++.-........+.+|.+|.+-|
T Consensus       367 ~tv~~id~---iG--Rk~iq~~GF~~~~i~~~~~~-~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR  440 (538)
T KOG0252|consen  367 FTVYFIDI---IG--RKYIQLMGFFIMTIFFFVIA-GPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVR  440 (538)
T ss_pred             EEEEEeeh---hh--hHHHHHhhHHHHHHHHHHHc-CCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHh
Confidence            45888998   45  88888888888888777666 4333 1   11223332322 33334555667788999999999


Q ss_pred             ccchhhhHHhhhhhhhHHHHHHHHHHHhhh-----ccchHHHHHHHHHHHHHHHHhheeecccccc
Q 013568          261 SVSGSLQSLCWGSSAFGGIVSSYFSGSMVD-----AYGVRFVFGVTALLPLITSGVAVLVKEQQVL  321 (440)
Q Consensus       261 ~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~-----~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~  321 (440)
                      +..-++.....=   +|.++|.....++.+     ..|.+++|++.+++.++..+..+++||++..
T Consensus       441 ~t~hGIsAA~GK---~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~  503 (538)
T KOG0252|consen  441 STCHGISAASGK---AGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGK  503 (538)
T ss_pred             hhhhhHHHHhcc---chHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccccc
Confidence            988777765555   999999999999988     7789999999999999998888999987654

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.02  E-value=0.00015  Score=73.81  Aligned_cols=135  Identities=10%  Similarity=0.019  Sum_probs=86.5

Q ss_pred             hHHHHHhhhhhHHH-Hhhhhhhcccc-CcCCCCcchhhhHHHHHHHHHHHHHHhhhch---------hHHHHHHHHHHHH
Q 013568          170 TAVISGFSSLPWLI-KPLYGFISDSL-PLFGYRRRSYLVLSGLLGALSWSLMATIVES---------KYSAALSILLGSL  238 (440)
Q Consensus       170 ~g~~~s~~~l~~~~-~~~~g~l~Dr~-~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~g~  238 (440)
                      .+++.++..+...+ +|+.+++-+|. .+.+  ....+.++.++.+++++.++ ....         .+.++...++.++
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~--~~~~~~~G~~l~~l~f~~l~-~~~~~~~~~~~vs~~~~~~~~~l~~~  394 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLP--MPHKFAIGMVLCSGAFLVLP-LGAKFANDAGIVSVNWLIASYGLQSI  394 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCC--cHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCccCHHHHHHHHHHHHH
Confidence            44555555544444 56554443332 0122  34456667777777766655 3322         3467888999999


Q ss_pred             HHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhh----------hccchHHHHHHHHHHHHHH
Q 013568          239 SVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV----------DAYGVRFVFGVTALLPLIT  308 (440)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~----------~~~gw~~~f~i~~~~~~~~  308 (440)
                      |.....+...+++.+..|++.||+.++++.....   +|..++..+.+...          ...+..+.|...++..++.
T Consensus       395 ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a---~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  471 (500)
T PRK09584        395 GELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTA---GAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVI  471 (500)
T ss_pred             HHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987765555   55555555543221          0123677887777666544


Q ss_pred             HH
Q 013568          309 SG  310 (440)
Q Consensus       309 ~~  310 (440)
                      .+
T Consensus       472 a~  473 (500)
T PRK09584        472 AV  473 (500)
T ss_pred             HH
Confidence            43

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.00021  Score=70.38  Aligned_cols=241  Identities=13%  Similarity=0.039  Sum_probs=136.0

Q ss_pred             hhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Q 013568          176 FSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVER  254 (440)
Q Consensus       176 ~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  254 (440)
                      +....+.+ +.+.+.+.|++   |  .|..++++...........  +-.|.+.+++.-.+.|+|.+........++++.
T Consensus        58 iiY~~ftv~~l~~psiv~~i---~--~K~~lv~ga~~y~~f~~gf--l~~N~y~~yfssallG~Gaallw~GqG~ylt~~  130 (461)
T KOG3098|consen   58 IIYAFFTVSCLFAPSIVNFL---G--PKWALVIGATCYAAFPLGF--LFPNSYYLYFSSALLGFGAALLWTGQGGYLTSN  130 (461)
T ss_pred             HHHHHHHHHHHhhHHHHHHh---h--HHHHHHHHhHHHHHHHHHH--HhcchHHHHHHHHHhhhhHHheecccceehhhc
Confidence            33444444 66779999984   4  8888888887777665444  345667788888999999999998999999999


Q ss_pred             hcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc--------cchH-H----------HHHHHHHH---HHHHHHhh
Q 013568          255 ARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA--------YGVR-F----------VFGVTALL---PLITSGVA  312 (440)
Q Consensus       255 ~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~--------~gw~-~----------~f~i~~~~---~~~~~~~~  312 (440)
                      .+++.+.+..++.   |+.+..+.++|..+-..+...        .+-+ +          +..+.+++   ..+..+..
T Consensus       131 st~~tie~Nisi~---Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~  207 (461)
T KOG3098|consen  131 STRETIERNISIF---WAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINF  207 (461)
T ss_pred             CChhhHHHHHHHH---HHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhhe
Confidence            9988877655444   443336666665444333211        1111 0          11111111   11222223


Q ss_pred             eeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhccccccc-eee--eeeeccCCCChh
Q 013568          313 VLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDS-AMF--YFTTNELGFTPE  389 (440)
Q Consensus       313 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~-~~~--~~~~~~~g~s~~  389 (440)
                      .+.|.+......+..+         +...+.++...+++++|+...+..+.+..++...... .++  +..+...+.+..
T Consensus       208 ~~~p~~~~~~~~~~~~---------~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~  278 (461)
T KOG3098|consen  208 DFLPSKDVVNCKSSSE---------TSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTT  278 (461)
T ss_pred             eecCccchhhhhhhcc---------ccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcch
Confidence            3444322211111100         2456677778888888886665543333322110111 111  111123444433


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHhhc---cCCchhHHHHHHHHHHHHhhh
Q 013568          390 -FLGRVKFVTSVASLLGVGLYNGFLK---NVPLRKIFLANTIFGTALGMT  435 (440)
Q Consensus       390 -~~g~~~~~~~i~~~~g~~~~~~l~~---r~g~r~~l~~~~~~~~~~~~~  435 (440)
                       ..+......+++.+++....+.+.+   ++|++..+.++.++..+.+++
T Consensus       279 ~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~l  328 (461)
T KOG3098|consen  279 YLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLL  328 (461)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHH
Confidence             3456667788888888888887764   467777777766655554443

>PRK11462 putative transporter; Provisional

Probab=97.95  E-value=0.00025  Score=71.39  Aligned_cols=155  Identities=12%  Similarity=-0.042  Sum_probs=82.0

Q ss_pred             ccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      +.+..+...+++.... .........|.+..+|. ....+.+.+++.++..+ .+++++++||   +|  ||..+..+..
T Consensus       228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r---~g--kk~~~~~~~~  301 (460)
T PRK11462        228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDW---KC--KVTIFWWTNA  301 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--hHHHHHHHHH
Confidence            3444444444444444 33333344444443443 33445555556666555 6788999999   45  4544443333


Q ss_pred             HHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhccc-----ccccchhhhHHhhhhhhhHHHHHHHH
Q 013568          211 LGALSWSLMATIVE-SKYSAALSILLGSLSVAFSDVVVDSMVVERARGE-----SQSVSGSLQSLCWGSSAFGGIVSSYF  284 (440)
Q Consensus       211 ~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-----~r~~~~~~~~~~~~~~~~g~~ig~~i  284 (440)
                      +..+..+++..... +...+++..++.|++.+...+..++++.|..+.+     +|.... .++....+..+|..+|+.+
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~-~~a~~~f~~Klg~alg~~i  380 (460)
T PRK11462        302 LLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGI-SFAGTLFVLKLGLAFGGAL  380 (460)
T ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHH-HHHHHHHHHHHHHHHHHHH
Confidence            33232222221222 2223344456677777777777788888887632     222221 1233233445899999988


Q ss_pred             HHHhhhccch
Q 013568          285 SGSMVDAYGV  294 (440)
Q Consensus       285 ~g~l~~~~gw  294 (440)
                      +|++.+..|+
T Consensus       381 ~g~iL~~~Gy  390 (460)
T PRK11462        381 IGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHcCC
Confidence            8887754443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.86  E-value=0.00071  Score=67.75  Aligned_cols=127  Identities=15%  Similarity=0.156  Sum_probs=92.0

Q ss_pred             hhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhc---h-----------------hHHHHHHHHHHHHHHHhhhh
Q 013568          186 LYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVE---S-----------------KYSAALSILLGSLSVAFSDV  245 (440)
Q Consensus       186 ~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~---~-----------------~~~~~~~~~l~g~~~~~~~~  245 (440)
                      +.-++.++   +| +||.+..++.++.+++.....+...   +                 .+..++...+.|+..+....
T Consensus       324 ~l~~l~~~---~g-~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~s  399 (477)
T TIGR01301       324 GMEKLCRG---WG-AGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYS  399 (477)
T ss_pred             HHHHHHHH---hc-cchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHH
Confidence            33445555   56 5677777887777777665552221   1                 25566777889999999999


Q ss_pred             hhhHHHHhhhcc--cccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHH-hheeecccc
Q 013568          246 VVDSMVVERARG--ESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG--VRFVFGVTALLPLITSG-VAVLVKEQQ  319 (440)
Q Consensus       246 ~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~g--w~~~f~i~~~~~~~~~~-~~~~~~e~~  319 (440)
                      .-.+++++..++  +..|..+++++.+..   +.+++..+..|.+.+.+|  -.+++.+.++..+++.+ ..+.+|+++
T Consensus       400 iPfal~s~~~~~~~~~~G~~mgilN~~I~---lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       400 IPFALASIRSSNLGAGQGLSMGVLNLAIV---IPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             HhHHHHHHHccccCCCCcchhhHHHHHHH---HHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999985  455888999998888   999999988888665554  56677888888877776 445667654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.81  E-value=0.00014  Score=71.05  Aligned_cols=111  Identities=15%  Similarity=0.140  Sum_probs=88.0

Q ss_pred             hhhHHHHHHHHHHHHHHh--hhchh------HHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhh
Q 013568          204 YLVLSGLLGALSWSLMAT--IVESK------YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSA  275 (440)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  275 (440)
                      .++++.++..++.+++..  .....      ..+.++.++.++|.|+.-+....+..|.++++++.+..+.++..+.+.|
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in   82 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN   82 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence            355666677777666331  22222      4577888899999999999999999999998866777888888899899


Q ss_pred             hHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhee
Q 013568          276 FGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVL  314 (440)
Q Consensus       276 ~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~  314 (440)
                      +|..++..+.+++-+++||.+.|.+.++..+++.+.++.
T Consensus        83 ~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   83 IGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999888877765543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.76  E-value=0.00043  Score=70.64  Aligned_cols=179  Identities=13%  Similarity=0.135  Sum_probs=115.5

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCCh---hhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDP---AETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~---~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      .+.+.++..|+.+.. .......|......++-+.   ...+++.....++..+ +.+.|.+.-++   | +-|..++++
T Consensus       311 ~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i---r-~~Kw~li~~  386 (599)
T PF06609_consen  311 GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI---R-HIKWQLIFG  386 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc---c-chhHHHHHH
Confidence            344555555665554 2333345555554455554   2466666666666555 56678888764   3 566666677


Q ss_pred             HHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHH
Q 013568          209 GLLGALSWSLMATI-VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS  287 (440)
Q Consensus       209 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~  287 (440)
                      .+++.+++.+++.. .++....+...++.|++.+...........-..|++..+.+.++......   +|+.+|..+..-
T Consensus       387 ~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~---~GGsIg~aIy~~  463 (599)
T PF06609_consen  387 SVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRS---IGGSIGYAIYNA  463 (599)
T ss_pred             HHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHH---HhhHHHHHHHHH
Confidence            66666554455422 34555566777889999988877777777777788888888877776666   777766655543


Q ss_pred             hhhc--------------------------------------------------------------cchHHHHHHHHHHH
Q 013568          288 MVDA--------------------------------------------------------------YGVRFVFGVTALLP  305 (440)
Q Consensus       288 l~~~--------------------------------------------------------------~gw~~~f~i~~~~~  305 (440)
                      +...                                                              .++|++|+....++
T Consensus       464 I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG  543 (599)
T PF06609_consen  464 IFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFG  543 (599)
T ss_pred             HHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3200                                                              24789999988888


Q ss_pred             HHHHHhheeecccc
Q 013568          306 LITSGVAVLVKEQQ  319 (440)
Q Consensus       306 ~~~~~~~~~~~e~~  319 (440)
                      +++.+..+|+++..
T Consensus       544 ~vaiiaa~fl~d~~  557 (599)
T PF06609_consen  544 VVAIIAALFLGDID  557 (599)
T ss_pred             HHHHHHHHHcCChH
Confidence            88888888888754

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.76  E-value=0.00012  Score=53.49  Aligned_cols=65  Identities=31%  Similarity=0.575  Sum_probs=48.7

Q ss_pred             HHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568          139 AMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       139 ~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      ...||..... +...+.++.|+++ .|++..++|.+.++..+...+ .|++|+++||+   | ++|..+..+
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~---~-~~~~~l~~~   72 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF---G-KRKVILLGS   72 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C-ccHHHHHHH
Confidence            3444444443 6777889999998 699999999998888877777 78999999994   4 555554444

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.75  E-value=0.0024  Score=64.07  Aligned_cols=274  Identities=14%  Similarity=0.132  Sum_probs=136.4

Q ss_pred             cHHHHHHHHHHHHHhh-hHHHHHHHHHHHhc---CCChhhhHHHHHhhhhhHHH--HhhhhhhccccCcCCCCcchhhhH
Q 013568          134 DNFAVAMVYFVQGVLG-LARLAVNFYLKDDL---HLDPAETAVISGFSSLPWLI--KPLYGFISDSLPLFGYRRRSYLVL  207 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~---g~s~~~~g~~~s~~~l~~~~--~~~~g~l~Dr~~~~G~~rr~~l~~  207 (440)
                      +++.+.+.+|+..+.+ +..     -++|.+   ..+++.+..+=....++.++  ..+...+++++   +  |.+++-+
T Consensus        25 k~~~l~~m~f~i~f~y~~lR-----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~---s--~~~lFy~   94 (491)
T PF03219_consen   25 KFLPLALMFFFILFNYTILR-----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL---S--REKLFYI   94 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C--HHHHHHH
Confidence            4566666666665542 222     234432   22455666666666677665  55779999984   3  5555554


Q ss_pred             HHHHHHHHHHHHHhh--------hchh----------------------HHHHHHHHHHHHHHHhh-hhhhhHHHHhhhc
Q 013568          208 SGLLGALSWSLMATI--------VESK----------------------YSAALSILLGSLSVAFS-DVVVDSMVVERAR  256 (440)
Q Consensus       208 ~~~~~~~~~~~~~~~--------~~~~----------------------~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~  256 (440)
                      ....+...+.+.+++        +++.                      |...+..+..-+-.+.. ....+++..|+++
T Consensus        95 ~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt  174 (491)
T PF03219_consen   95 IIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITT  174 (491)
T ss_pred             HHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            444444444444422        1111                      01111111112222222 3357899999999


Q ss_pred             ccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh---------ccchHHHHHHH----HHHHHHHHHhheeeccccccCC
Q 013568          257 GESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD---------AYGVRFVFGVT----ALLPLITSGVAVLVKEQQVLGP  323 (440)
Q Consensus       257 ~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~---------~~gw~~~f~i~----~~~~~~~~~~~~~~~e~~~~~~  323 (440)
                      .+|-.+..++++.+..   +|.++++.+..++.+         ...|...+...    .+.+.+......++.+....++
T Consensus       175 ~~eAKRfYpl~g~gan---igli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~  251 (491)
T PF03219_consen  175 VEEAKRFYPLFGLGAN---IGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDP  251 (491)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence            8887766666665444   888888877777766         12354433221    1222222222222222111111


Q ss_pred             Cc-CCCCCCCCCccchhhHHHH-HHHHHHhcCcchhhhHHHHHhhhcccc-ccceeeeeeeccCCCChh----hHHHHHH
Q 013568          324 SR-RQNLPLGDPSFFESSKQNM-FQLWEAVKQPNVFLPTLFVFLWQATPH-SDSAMFYFTTNELGFTPE----FLGRVKF  396 (440)
Q Consensus       324 ~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~g~s~~----~~g~~~~  396 (440)
                      .. +......+    +..+... ..++.+++.|.+..+++...+|+.... ....+-....+.+ -++.    ..|....
T Consensus       252 ~~~~~~~~~kk----~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~-~~~~~ysafmG~~~~  326 (491)
T PF03219_consen  252 RFYPSAKKKKK----KKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLY-PDPNDYSAFMGKFSS  326 (491)
T ss_pred             ccchhhhcccc----cCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            00 00000000    1112222 334456688888888877777776321 1111110000111 1222    2355556


Q ss_pred             HHHHHHHHHHHHHHHhhccCCchhHHHHH
Q 013568          397 VTSVASLLGVGLYNGFLKNVPLRKIFLAN  425 (440)
Q Consensus       397 ~~~i~~~~g~~~~~~l~~r~g~r~~l~~~  425 (440)
                      ..++..++-.++++.+.+|+|.+....+.
T Consensus       327 ~tGivtii~~~l~~~iir~~GW~~~Alit  355 (491)
T PF03219_consen  327 WTGIVTIIMMFLSSNIIRRFGWRTAALIT  355 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            67777777778889999999988776664

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.63  E-value=0.0015  Score=66.18  Aligned_cols=133  Identities=17%  Similarity=0.131  Sum_probs=88.7

Q ss_pred             HHHHhhhhhHHH-HhhhhhhccccCcCCCCcch------hhhHHHHHHHHHHHHHH----hhh-----chhHHHHHHHHH
Q 013568          172 VISGFSSLPWLI-KPLYGFISDSLPLFGYRRRS------YLVLSGLLGALSWSLMA----TIV-----ESKYSAALSILL  235 (440)
Q Consensus       172 ~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~------~l~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~l  235 (440)
                      ++.++..+...+ .|+.|++.||+   | +|+.      -+.++.++.+++.+.++    ...     .+.+.++...++
T Consensus       313 ~~~~~n~~~iii~~pl~~~l~~rl---~-~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l  388 (489)
T PRK10207        313 SFQALNPFWVVVASPILAGIYTHL---G-SKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLF  388 (489)
T ss_pred             HHHhHhHHHHHHHHHHHHHHHHHH---h-hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHH
Confidence            344444444434 88889999984   4 3331      24455555555543221    011     245667778899


Q ss_pred             HHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh----------ccchHHHHHHHHHHH
Q 013568          236 GSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD----------AYGVRFVFGVTALLP  305 (440)
Q Consensus       236 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~----------~~gw~~~f~i~~~~~  305 (440)
                      .|+|..+..+...+++.+..|++.++.+++++.....   +|..+|..++.....          .-.+.+.|...++..
T Consensus       389 ~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~---ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  465 (489)
T PRK10207        389 QSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQA---AAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVT  465 (489)
T ss_pred             HHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987777   888888877765421          112456677766666


Q ss_pred             HHHHHh
Q 013568          306 LITSGV  311 (440)
Q Consensus       306 ~~~~~~  311 (440)
                      ++..++
T Consensus       466 ~~~~v~  471 (489)
T PRK10207        466 LGVAVV  471 (489)
T ss_pred             HHHHHH
Confidence            555443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.63  E-value=0.00081  Score=68.71  Aligned_cols=161  Identities=17%  Similarity=0.085  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhch---
Q 013568          150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVES---  225 (440)
Q Consensus       150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~---  225 (440)
                      ......+.+++. .|.+... .+...+..+...+ ..+...+.||   +|  ||+.++.+.+.+.++.++++.....   
T Consensus       313 ~~~~Y~~~if~~-~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~---~g--Rr~lll~s~~~m~~~~~~~~~~~~~~~~  385 (513)
T KOG0254|consen  313 YVFYYSTTIFKS-AGLKSDT-FLASIILGVVNFLGTLVATYLVDR---FG--RRKLLLFGAAGMSICLVILAVVGVFALY  385 (513)
T ss_pred             eEEeehHHHHHh-cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH---hc--cHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence            444455555666 4666443 2222223333333 3455899999   45  8999999988888887776622110   


Q ss_pred             --------hHHHHH-HHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHH
Q 013568          226 --------KYSAAL-SILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRF  296 (440)
Q Consensus       226 --------~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~  296 (440)
                              ....++ ..+..........+..+.+.+|++|.+-|+.+.++......   +...+-....-.+.+..++..
T Consensus       386 ~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~---~~~~~v~~~~~~~~~~~~~~~  462 (513)
T KOG0254|consen  386 YPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNW---LWNFLISFFFPFITEALGIGG  462 (513)
T ss_pred             CCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHhccccc
Confidence                    011111 11222222233455666788999999999988776655444   333332333323333333345


Q ss_pred             HHHHHHHHHHHHHH--hheeeccccc
Q 013568          297 VFGVTALLPLITSG--VAVLVKEQQV  320 (440)
Q Consensus       297 ~f~i~~~~~~~~~~--~~~~~~e~~~  320 (440)
                      .|...+....+..+  +.+++||++.
T Consensus       463 ~f~~f~~~~~~~~~~fv~~~~pETkg  488 (513)
T KOG0254|consen  463 TFGYFGGICLLSLIIFVFFFVPETKG  488 (513)
T ss_pred             hHHHHHHHHHHHHHHHheEEcccCCC
Confidence            55555555544444  6678899875

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.52  E-value=0.021  Score=56.15  Aligned_cols=273  Identities=13%  Similarity=0.092  Sum_probs=141.7

Q ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCC---hhhhHHHHHhhhhhHHH--HhhhhhhccccCcCCCCcchhhhHH
Q 013568          134 DNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLD---PAETAVISGFSSLPWLI--KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s---~~~~g~~~s~~~l~~~~--~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      +++-+.+.+++..+...    +.--++|.+.++   ++.+.++-++..+|.++  .++.++++++.     .+..++-..
T Consensus        28 kflpl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-----t~~~vF~~~   98 (509)
T COG3202          28 KFLPLALLFFCILFNYN----LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-----TREKVFYII   98 (509)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-----CHHHHHHHH
Confidence            34445555555555421    222356666544   56677777778887665  77889999985     355555554


Q ss_pred             HHHHHHHHHHHHhhh--------ch-----------h------------HHHHHHHHHHHHHHHh-hhhhhhHHHHhhhc
Q 013568          209 GLLGALSWSLMATIV--------ES-----------K------------YSAALSILLGSLSVAF-SDVVVDSMVVERAR  256 (440)
Q Consensus       209 ~~~~~~~~~~~~~~~--------~~-----------~------------~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~  256 (440)
                      ...+..++++++..-        ++           .            |...+.....=+-.+. ..-..+....|+++
T Consensus        99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt  178 (509)
T COG3202          99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT  178 (509)
T ss_pred             HHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            444544444444221        11           0            1111222222222222 33367888999999


Q ss_pred             ccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhcc-c---------hHHHHHHHHHHHHHHHHhheeec----cccccC
Q 013568          257 GESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY-G---------VRFVFGVTALLPLITSGVAVLVK----EQQVLG  322 (440)
Q Consensus       257 ~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~-g---------w~~~f~i~~~~~~~~~~~~~~~~----e~~~~~  322 (440)
                      .++-.+..++++....   ++.+++..+..++.++. .         -+..+.+.++.++++..+..++.    +++...
T Consensus       179 ~~eakRFy~lf~l~~n---i~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~  255 (509)
T COG3202         179 IEEAKRFYPLFGLGAN---ISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFY  255 (509)
T ss_pred             HHHhhhhHHHHHHHHH---HHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchh
Confidence            9888877777765555   88888887777776521 1         23444444444444444333322    222210


Q ss_pred             -CCc-CCCCCCCCCccchhhHHHH-HHHHHHhcCcchhhhHHHHHhhhcccc-ccceeeeeeeccCCC---ChhhHHHHH
Q 013568          323 -PSR-RQNLPLGDPSFFESSKQNM-FQLWEAVKQPNVFLPTLFVFLWQATPH-SDSAMFYFTTNELGF---TPEFLGRVK  395 (440)
Q Consensus       323 -~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~g~---s~~~~g~~~  395 (440)
                       +.. +++.+        ..+..+ ...+.+++.|-++.+++...+|+.... ....+=--..+.+--   -....|.+.
T Consensus       256 ~~~~~kk~~~--------k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~  327 (509)
T COG3202         256 LRAKKKKKKK--------KLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQ  327 (509)
T ss_pred             HHHhcccccc--------cccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHH
Confidence             111 11111        111222 234445678888888888888877322 111110000000100   112334455


Q ss_pred             HHHHHH-HHHHHHHHHHhhccCCchhHHHHHH
Q 013568          396 FVTSVA-SLLGVGLYNGFLKNVPLRKIFLANT  426 (440)
Q Consensus       396 ~~~~i~-~~~g~~~~~~l~~r~g~r~~l~~~~  426 (440)
                      ...++. .++...+++.+.+|.|.....++.-
T Consensus       328 ~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitP  359 (509)
T COG3202         328 IWTGVVSLVVFLFPGSNLIRRVGWFTGALITP  359 (509)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHH
Confidence            556665 6677788899999999765555433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.51  E-value=0.021  Score=55.56  Aligned_cols=130  Identities=25%  Similarity=0.224  Sum_probs=81.9

Q ss_pred             HHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHH
Q 013568          173 ISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMV  251 (440)
Q Consensus       173 ~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  251 (440)
                      +...-.++..+ ..++-++.+|++   |+.|..  ...++..++.++.+ ++++.+.-+++..+.+++.|......-++.
T Consensus        64 Vlladi~P~l~~Kl~aP~fi~~v~---y~~Ri~--~~~~l~~~g~l~va-~~~~v~~~l~Gv~las~ssg~GE~tfL~lt  137 (402)
T PF02487_consen   64 VLLADILPSLLVKLIAPFFIHRVP---YWIRIL--ICVALSAAGMLLVA-FSPSVWVRLLGVVLASLSSGLGEVTFLSLT  137 (402)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhcc---chHHHH--HHHHHHHHHHhhee-eccchhHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            44344556555 666777888863   224433  33345666666666 678888888888888988888777776664


Q ss_pred             HhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHHhhe-eecc
Q 013568          252 VERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG--VRFVFGVTALLPLITSGVAV-LVKE  317 (440)
Q Consensus       252 ~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~g--w~~~f~i~~~~~~~~~~~~~-~~~e  317 (440)
                      . .+++    ...+.++.+.+   .++++|+..-..+.+ .|  .|..+.+...+.++.++.++ .++.
T Consensus       138 ~-~y~~----~~l~~wssGTG---~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  138 H-FYGK----SSLSAWSSGTG---GAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             H-hcCc----cccccccCCcC---hhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4 4443    23445555555   778888876666655 54  47778777777665555433 4443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PTZ00207 hypothetical protein; Provisional

Probab=97.09  E-value=0.011  Score=60.74  Aligned_cols=180  Identities=8%  Similarity=0.056  Sum_probs=106.3

Q ss_pred             cccccCCccHHHHHHHHHHHHHhh-hHHHHHHHHHHHhc-CCCh-hh-hHHHHHhhhhhHHH-HhhhhhhccccCcCC-C
Q 013568          126 FFGVDLSPDNFAVAMVYFVQGVLG-LARLAVNFYLKDDL-HLDP-AE-TAVISGFSSLPWLI-KPLYGFISDSLPLFG-Y  199 (440)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-g~s~-~~-~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G-~  199 (440)
                      ++....+..+|++++.+++..-.+ .....+-+..+. + |.+. .+ ..+++++..++..+ ....|.++..+.+.+ .
T Consensus       346 ~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~s-l~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~  424 (591)
T PTZ00207        346 FIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTA-LAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAE  424 (591)
T ss_pred             HHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHH-hcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccc
Confidence            333445567999888888765543 333344444444 5 6522 32 22256677777776 455566662211111 0


Q ss_pred             C--cchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhH
Q 013568          200 R--RRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFG  277 (440)
Q Consensus       200 ~--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g  277 (440)
                      +  .|+..+....++.++.++++ +.-+...+.+.-++.|++.|...++....++|++- ++-|   ..+++...+.-+|
T Consensus       425 ~r~prt~~l~~~~~~~~~~lll~-~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g---~~yN~~~~a~pig  499 (591)
T PTZ00207        425 DRVPITIALFIPSVCIITMLTLF-LTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPA---KHYNFCFLGSVLS  499 (591)
T ss_pred             cccchhHHHHHHHHHHHHHHHHH-HHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchH---HHhhHHhHHHHHH
Confidence            0  12333332223445555555 33333578889999999999999999999999998 5545   4566555433355


Q ss_pred             HHHH-HHHHHHhhhcc----------c---hHHHHHHHHHHHHHHHHh
Q 013568          278 GIVS-SYFSGSMVDAY----------G---VRFVFGVTALLPLITSGV  311 (440)
Q Consensus       278 ~~ig-~~i~g~l~~~~----------g---w~~~f~i~~~~~~~~~~~  311 (440)
                      .++- ..+.|.+.++.          |   .+..|.+++.+++++.+.
T Consensus       500 s~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~  547 (591)
T PTZ00207        500 AIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFIT  547 (591)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHH
Confidence            5554 34556555431          2   678899888888777663

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.08  E-value=0.0012  Score=48.26  Aligned_cols=48  Identities=21%  Similarity=0.420  Sum_probs=42.9

Q ss_pred             ccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHH
Q 013568          382 NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFG  429 (440)
Q Consensus       382 ~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~  429 (440)
                      ++.|+++.++|.+.++..+..+++..++|++.||.++++.+.....++
T Consensus        28 ~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   28 KQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            568999999999999999999999999999999999988877765543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.01  E-value=0.027  Score=47.35  Aligned_cols=101  Identities=12%  Similarity=0.031  Sum_probs=71.9

Q ss_pred             hhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhc
Q 013568          178 SLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERAR  256 (440)
Q Consensus       178 ~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  256 (440)
                      ...+.+ .++...+.++   .|  .|..++++.+...+-....  +-++.+.++.+-.+.|++.+...++...++.+..+
T Consensus        47 Y~~~~~s~l~~P~iv~~---lg--~K~sm~lg~~~y~~y~~~~--~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~  119 (156)
T PF05978_consen   47 YGSFAISCLFAPSIVNK---LG--PKWSMILGSLGYAIYIASF--FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST  119 (156)
T ss_pred             HHHHHHHHHhHHHHHHH---Hh--hHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence            333444 5555677777   45  7888888877776543332  44667788888899999999999999999999999


Q ss_pred             ccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          257 GESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       257 ~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      ++.+++..+++-....   .+.++|.++.-.+
T Consensus       120 ~~~~~~~~~ifw~i~~---~s~i~G~~~~~~~  148 (156)
T PF05978_consen  120 EETIGRNTGIFWAIFQ---SSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHhhHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            9888876665543333   6777777665544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.00  E-value=0.0055  Score=58.20  Aligned_cols=129  Identities=16%  Similarity=0.133  Sum_probs=92.6

Q ss_pred             HHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 013568          155 VNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSI  233 (440)
Q Consensus       155 l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (440)
                      ...+..+.+|.++.+.|-+.+...+...+ +....+..||.  .| .-+.++..+..++.-..+.+. .......+.+..
T Consensus       284 ~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~--~~-~~~a~l~~~l~~~vP~~llls-~~~~~~~l~~~s  359 (451)
T KOG2615|consen  284 VLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRY--KG-NIKAVLLFSLLLIVPAFLLLS-LARTPVVLYLGS  359 (451)
T ss_pred             HHHhhcCccCCChhhheeeeehhhHHHHHHHHhcccccccc--cc-chhhHHHHHHHHHHHHHHHHh-ccccchhhhHHH
Confidence            33333456899999999887777776665 77778888873  22 234444444444433333444 556667777888


Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh
Q 013568          234 LLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD  290 (440)
Q Consensus       234 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~  290 (440)
                      .+..+..+...+....++....|.++||..+++......   ++-++||+++|.+..
T Consensus       360 ~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~a---laRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  360 TLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGA---LARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHH---HHHHhhhhhhheeEE
Confidence            888888888888888899999999999987777665555   999999999998764

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.89  E-value=0.042  Score=56.26  Aligned_cols=127  Identities=17%  Similarity=0.115  Sum_probs=84.9

Q ss_pred             hhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhH--HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccc
Q 013568          186 LYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY--SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVS  263 (440)
Q Consensus       186 ~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~  263 (440)
                      ..+.+.|+   +|  ||.....+.++..++.++.++......  ...+...+..++.+........+..|+.|...|..+
T Consensus       369 ~~~~~~~~---~g--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~  443 (521)
T KOG0255|consen  369 RNGLLLPE---FG--RRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTA  443 (521)
T ss_pred             HHHHHHHH---hC--cHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            33678887   45  888888888888888777774443333  344555566666666666778899999999999988


Q ss_pred             hhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH-hheeecccccc
Q 013568          264 GSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSG-VAVLVKEQQVL  321 (440)
Q Consensus       264 ~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~  321 (440)
                      .+..+....   +|.+++|.+...... +.....+.+.+....+..+ ..+++||++..
T Consensus       444 ~~~~~~~~~---~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~  498 (521)
T KOG0255|consen  444 VGAISAAAR---LGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGK  498 (521)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            888887777   888888887765543 2222222223444444444 44788998754

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.79  E-value=0.0094  Score=44.14  Aligned_cols=75  Identities=23%  Similarity=0.187  Sum_probs=53.1

Q ss_pred             HHhhhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHHH-hhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhc
Q 013568          146 GVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIK-PLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVE  224 (440)
Q Consensus       146 ~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~~-~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~  224 (440)
                      |+.-+..+.+.|.+.++.++|.++.|++.+...++|.++ .....+.++.     +++..+..+.+...++...++ +.+
T Consensus         5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~ma-~~~   78 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-----RPRRLLRAGLLLTVLSTAAMA-LTH   78 (85)
T ss_pred             hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHH-HHh
Confidence            333233344555556668999999999999999999995 4557777752     466777778888888877777 444


Q ss_pred             hh
Q 013568          225 SK  226 (440)
Q Consensus       225 ~~  226 (440)
                      +.
T Consensus        79 ~~   80 (85)
T PF06779_consen   79 SF   80 (85)
T ss_pred             ch
Confidence            43

Note that many members are hypothetical proteins.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=96.70  E-value=0.015  Score=59.69  Aligned_cols=157  Identities=15%  Similarity=0.081  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHhcCCChhhhHHHHHhhhhhHHHH-hhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhh------c
Q 013568          152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLIK-PLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIV------E  224 (440)
Q Consensus       152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~~-~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~------~  224 (440)
                      ...+..|+.+++|.+...+.-....+.-..... .+.++++|-+  +|  |-+.+.++.++..++.+++...+      +
T Consensus        57 ~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f--~g--ry~tI~~~s~i~~~G~~~lt~~a~~~~l~p  132 (571)
T KOG1237|consen   57 VSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSF--LG--RYFTINIGSLISLLGLFGLTLSAMIPALLP  132 (571)
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            446667788888988876666555554444444 4679999997  77  66666666555555543332111      0


Q ss_pred             ---------------h---hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhc---ccccccchhhhHHhhhhhhhHHHHHHH
Q 013568          225 ---------------S---KYSAALSILLGSLSVAFSDVVVDSMVVERAR---GESQSVSGSLQSLCWGSSAFGGIVSSY  283 (440)
Q Consensus       225 ---------------~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~g~~ig~~  283 (440)
                                     +   ...+.....+..+|.+..-+...++-+|-++   ++++......++..+...++|..++..
T Consensus       133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t  212 (571)
T KOG1237|consen  133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQT  212 (571)
T ss_pred             ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHH
Confidence                           0   0133455566667788888888889899888   444444557777777777899999998


Q ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHHhh
Q 013568          284 FSGSMVDAYGVRFVFGVTALLPLITSGVA  312 (440)
Q Consensus       284 i~g~l~~~~gw~~~f~i~~~~~~~~~~~~  312 (440)
                      +..++-+..||.+.|.+..+..+++.+++
T Consensus       213 ~~vyiq~~~~w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  213 VLVYIQDNVGWKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             HHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence            88888888999999999887776665543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.42  E-value=0.0014  Score=64.74  Aligned_cols=74  Identities=31%  Similarity=0.483  Sum_probs=55.8

Q ss_pred             HHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHH
Q 013568          142 YFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLM  219 (440)
Q Consensus       142 ~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~  219 (440)
                      ++..+.. +.+.+.++.|.++ +|+++.++|.++.+--+...+ .|++|+++||+    .++|+.++.+.+..+.+.+++
T Consensus        20 ~~~~~~~~g~l~pll~vy~kQ-LGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~----r~~r~lllgsl~~~v~a~fll   94 (618)
T KOG3762|consen   20 YLFFGARFGSLFPLLAVYFKQ-LGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY----RKRRPLLLGSLLLSVTATFLL   94 (618)
T ss_pred             eeeeeecccccchHHHHHHHH-cCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH----HhcCchhHHHHHHHHHHHHhe
Confidence            3433343 5566678888888 899999999998887777777 89999999996    357777777777766666665


Q ss_pred             H
Q 013568          220 A  220 (440)
Q Consensus       220 ~  220 (440)
                      .
T Consensus        95 ~   95 (618)
T KOG3762|consen   95 V   95 (618)
T ss_pred             e
Confidence            5

>PRK03612 spermidine synthase; Provisional

Probab=96.36  E-value=0.22  Score=50.84  Aligned_cols=154  Identities=12%  Similarity=0.089  Sum_probs=74.9

Q ss_pred             HHHHHHHHHhh-hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHH---HH
Q 013568          139 AMVYFVQGVLG-LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL---GA  213 (440)
Q Consensus       139 ~~~~~~~~~~~-~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~---~~  213 (440)
                      ....|..++.+ .+.....-.+.-.+|-+....+.+.+++.++.++ ..+.+.+.++.      .+.+...-..+   ..
T Consensus        20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~------~~~~~~~e~~i~l~~~   93 (521)
T PRK03612         20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA------AAGFVAVELLLALLGG   93 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHHHHH
Confidence            33444555554 3444444555666888888899999999999887 34555555331      22222221111   11


Q ss_pred             HHHHHHHhhh---chh-HHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhh
Q 013568          214 LSWSLMATIV---ESK-YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV  289 (440)
Q Consensus       214 ~~~~~~~~~~---~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~  289 (440)
                      ++..++....   ... ..+....++.++..|+..|....+..+...++.....+.++. ...   +|.++|.++.+++.
T Consensus        94 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~-~nt---lGa~~G~l~~~~vL  169 (521)
T PRK03612         94 LSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLA-ADY---LGALVGGLAFPFLL  169 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHh-HHh---HHHHHHHHHHHHHH
Confidence            1111111000   011 112233345556666665555555443322112122223332 333   89999999988754


Q ss_pred             -hccchHHHHHHHH
Q 013568          290 -DAYGVRFVFGVTA  302 (440)
Q Consensus       290 -~~~gw~~~f~i~~  302 (440)
                       ..+|-....++.+
T Consensus       170 lp~lG~~~t~~~~a  183 (521)
T PRK03612        170 LPRLGLIRTAALTG  183 (521)
T ss_pred             HHhcchHHHHHHHH
Confidence             4566443333333

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=96.23  E-value=0.026  Score=52.96  Aligned_cols=121  Identities=15%  Similarity=0.164  Sum_probs=80.4

Q ss_pred             hhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhH
Q 013568          189 FISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQS  268 (440)
Q Consensus       189 ~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  268 (440)
                      .+.|-+     |.||++++-.+....++.++. +.++.+.+-+.-++.|...+. ..+..+++-+..+++++.+..+...
T Consensus        64 lLTD~l-----rYKPvivlq~ls~v~~w~~lv-~g~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~R  136 (433)
T KOG3810|consen   64 LLTDYL-----RYKPVVVLQALSGVPVWIMLV-FGPSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRVTGYCR  136 (433)
T ss_pred             HHhhhh-----hcceeeeeeccchhHHHHHHH-hcCCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHHHHHhH
Confidence            567874     689998887777777777766 778887777777777776655 3577788888888887776666555


Q ss_pred             HhhhhhhhHHHHHHHHHHHhhh--ccchHHHHHHHHHHHHHHHHhheeecccc
Q 013568          269 LCWGSSAFGGIVSSYFSGSMVD--AYGVRFVFGVTALLPLITSGVAVLVKEQQ  319 (440)
Q Consensus       269 ~~~~~~~~g~~ig~~i~g~l~~--~~gw~~~f~i~~~~~~~~~~~~~~~~e~~  319 (440)
                      ....   .|-.+|...+-.++.  ..++...-.+......++.+..+++|..+
T Consensus       137 aA~L---~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~  186 (433)
T KOG3810|consen  137 AAFL---VGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVK  186 (433)
T ss_pred             HHHH---HHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCc
Confidence            4444   666666666666553  23344444454444445555667777665

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.15  E-value=0.018  Score=56.04  Aligned_cols=182  Identities=12%  Similarity=0.065  Sum_probs=94.9

Q ss_pred             cCCccHHHHHHHHHHH-HHhhhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhH
Q 013568          130 DLSPDNFAVAMVYFVQ-GVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVL  207 (440)
Q Consensus       130 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~  207 (440)
                      ..++++..+.+.|... +..+.....+...+.. -|.+....|.+..+..++..+ ..+.|.+.||.   . +-|..+.+
T Consensus       263 ~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt---k-~fk~~~~v  337 (480)
T KOG2563|consen  263 FKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMIVAGMLGALASGIIADKT---K-KFKLTTLV  337 (480)
T ss_pred             HcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhh---h-hHHHHHHH
Confidence            3455666666555332 2223334344434444 367777788876666666666 66789999994   1 23344444


Q ss_pred             HHHHHHHHHHHHHhhhc---hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHH
Q 013568          208 SGLLGALSWSLMATIVE---SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYF  284 (440)
Q Consensus       208 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i  284 (440)
                      ......++...+..+..   ....+...-.+.|++.....+...-+..|..-+..-+...|+.++...   +-+++-..+
T Consensus       338 ~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq---~f~~~~~~~  414 (480)
T KOG2563|consen  338 LYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQ---IFGVILVFI  414 (480)
T ss_pred             HHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehh---HHHHHHHHH
Confidence            33333333222221111   112233444566677777777888888887766554555555543333   444444555


Q ss_pred             HHHhhhccc---hHH-HHHHHHHHHHHHHHhheeecccc
Q 013568          285 SGSMVDAYG---VRF-VFGVTALLPLITSGVAVLVKEQQ  319 (440)
Q Consensus       285 ~g~l~~~~g---w~~-~f~i~~~~~~~~~~~~~~~~e~~  319 (440)
                      -+...+..+   |.+ .-+......++.+++..++++..
T Consensus       415 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y  453 (480)
T KOG2563|consen  415 MGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDY  453 (480)
T ss_pred             HHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhH
Confidence            555555554   333 33333444444445444555443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=96.07  E-value=0.38  Score=48.64  Aligned_cols=134  Identities=13%  Similarity=0.069  Sum_probs=80.9

Q ss_pred             hHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcc----hh-hhHHHHHHHHHHHHHHhhh--------chhHHHHHHHHH
Q 013568          170 TAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRR----SY-LVLSGLLGALSWSLMATIV--------ESKYSAALSILL  235 (440)
Q Consensus       170 ~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr----~~-l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l  235 (440)
                      .++..++..+...+ +|+.+++=.|.   +.++|    +. +.++.++..+++..+....        .+...+++..++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l---~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~  386 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKES---VAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAV  386 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHH---hcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence            44555555554444 77766664442   10111    11 4556666666665553111        245667888899


Q ss_pred             HHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh------------ccchHHHHHHHHH
Q 013568          236 GSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD------------AYGVRFVFGVTAL  303 (440)
Q Consensus       236 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~------------~~gw~~~f~i~~~  303 (440)
                      ..+|.-...|+..++++++.|++.++..++++....  +.+|..++..+++....            ...+...|...++
T Consensus       387 ~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  464 (493)
T PRK15462        387 MGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLS--GAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITW  464 (493)
T ss_pred             HHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHH
Confidence            999999999999999999999999998888874311  11455554444443321            0124556776666


Q ss_pred             HHHHH
Q 013568          304 LPLIT  308 (440)
Q Consensus       304 ~~~~~  308 (440)
                      ..++.
T Consensus       465 ~~~~~  469 (493)
T PRK15462        465 GALAC  469 (493)
T ss_pred             HHHHH
Confidence            55444

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.89  E-value=0.23  Score=49.33  Aligned_cols=151  Identities=15%  Similarity=0.110  Sum_probs=91.4

Q ss_pred             cCCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHh--cCCChhhh-HHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchh
Q 013568          130 DLSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDD--LHLDPAET-AVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSY  204 (440)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~--~g~s~~~~-g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~  204 (440)
                      ..+++.+.+...++..|+. +......|..+.-.  .+.+.... ++..-...++..+ +.+++.+++|++++|  |++.
T Consensus       237 ~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg--~~~~  314 (461)
T KOG3098|consen  237 LKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFG--RKPT  314 (461)
T ss_pred             hcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc--cCcc
Confidence            3455666677777777665 44444444443321  23333332 2222223444444 678899999987777  7888


Q ss_pred             hhHHHHHHHHHHHHHHhhhc-----------------hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhh
Q 013568          205 LVLSGLLGALSWSLMATIVE-----------------SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQ  267 (440)
Q Consensus       205 l~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  267 (440)
                      +.++..+..+..++.-...+                 +.....++-++.|++-+........++.+.. +++|..+.+++
T Consensus       315 ~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~  393 (461)
T KOG3098|consen  315 VLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLF  393 (461)
T ss_pred             hhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHH
Confidence            77777666665544431111                 1335567778899999998888999999998 55566676777


Q ss_pred             HHhhhhhhhHHHHHHHHHH
Q 013568          268 SLCWGSSAFGGIVSSYFSG  286 (440)
Q Consensus       268 ~~~~~~~~~g~~ig~~i~g  286 (440)
                      .+-..   ++..++-....
T Consensus       394 kfyq~---~~s~v~~f~~~  409 (461)
T KOG3098|consen  394 KFYQS---VASCVAFFFSP  409 (461)
T ss_pred             HHHHH---HHHHHHhhhhh
Confidence            66655   55555444443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=95.82  E-value=0.055  Score=54.09  Aligned_cols=125  Identities=18%  Similarity=0.191  Sum_probs=94.8

Q ss_pred             HHHHHHHhcCCChhhhHHHHHhhhhhHHH-Hhhhh-hhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHH
Q 013568          155 VNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYG-FISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALS  232 (440)
Q Consensus       155 l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g-~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (440)
                      ++.|++..++.+..+.+.+.+.......+ +.+.. .+.-.   +|  .|.++.++...-.+.....+ ++...+++...
T Consensus       264 ~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~---l~--~~~~i~lGl~~~~~~~~~~a-f~~~~w~~~~~  337 (463)
T KOG2816|consen  264 LLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI---LG--EKRLISLGLLSEFLQLLLFA-FATETWMMFAA  337 (463)
T ss_pred             EEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh--hhhHhhHHHHHHHHHHHHHH-HhccchhhhHH
Confidence            35667777999999999877777766666 55554 44444   55  44477888888878877777 77777777776


Q ss_pred             HHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhh
Q 013568          233 ILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV  289 (440)
Q Consensus       233 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~  289 (440)
                      ..+.++. ....+...++++.+..++++|+..++.+....   +.++++|.+-+.+.
T Consensus       338 ~v~~~~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~---l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  338 GVVVALA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEG---LSGVVSPALYGNIF  390 (463)
T ss_pred             HHHHHhh-cchhHHHHhHHHhhcccccccchhhHHHHHHH---HhhhhhHHHHHHHH
Confidence            6655554 44567889999999999999999999888777   88899998888765

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.77  E-value=0.096  Score=51.03  Aligned_cols=63  Identities=16%  Similarity=0.072  Sum_probs=51.8

Q ss_pred             hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          223 VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       223 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      .++.+.+++..+..|+..|...+-....+.|-.++++|..+++..+++..   +|..++.+++-++
T Consensus       332 ipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds---~GI~lAgll~l~l  394 (402)
T PF02487_consen  332 IPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDS---LGILLAGLLGLPL  394 (402)
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH
Confidence            35667777788899999999888888888988899999999999888877   7877777776554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.70  E-value=0.039  Score=52.44  Aligned_cols=54  Identities=13%  Similarity=0.064  Sum_probs=47.6

Q ss_pred             ccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhhh
Q 013568          382 NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMT  435 (440)
Q Consensus       382 ~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~~  435 (440)
                      +.+|++..+++.++....+..++.+.+.|.+.||+|||+..+..+++.++.++.
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~  115 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT  115 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            578999999999999988888888888999999999999999888888777754

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.19  E-value=0.096  Score=54.93  Aligned_cols=82  Identities=18%  Similarity=0.214  Sum_probs=55.7

Q ss_pred             CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhh-HHH-HhhhhhhccccCcCCCCcchhhhH
Q 013568          131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLP-WLI-KPLYGFISDSLPLFGYRRRSYLVL  207 (440)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~-~~~-~~~~g~l~Dr~~~~G~~rr~~l~~  207 (440)
                      .++.++...+..++.... ..+..++|.|+++.+|++..+++++.++..++ .++ .++.|+++||+   +.+.|..+.+
T Consensus       328 ~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~---~~~~~~~~~~  404 (633)
T TIGR00805       328 CNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF---KLNVKKAAYF  404 (633)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee---cccHHHHHHH
Confidence            455666666666555544 56777999999999999999999998877764 445 67889999995   3123444444


Q ss_pred             HHHHHHHH
Q 013568          208 SGLLGALS  215 (440)
Q Consensus       208 ~~~~~~~~  215 (440)
                      +.++..++
T Consensus       405 ~~~~~~~~  412 (633)
T TIGR00805       405 AICLSTLS  412 (633)
T ss_pred             HHHHHHHH
Confidence            44433333

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=94.83  E-value=0.12  Score=46.79  Aligned_cols=101  Identities=12%  Similarity=0.105  Sum_probs=51.0

Q ss_pred             cccccchhhhHHhhhhhhhHHHHHHHHHHHh---h--hccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCC
Q 013568          258 ESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM---V--DAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLG  332 (440)
Q Consensus       258 ~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l---~--~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  332 (440)
                      ++|+..+.+...++.   +|.++.....-.-   .  ..-.|++++.+.+++.++-++++.++ +++-+...++++++..
T Consensus         2 k~K~~~s~~n~~gf~---iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if-Gk~fd~~~~~~k~~k~   77 (267)
T PF07672_consen    2 KKKSILSQFNPWGFN---IGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF-GKNFDIYSPKEKQEKE   77 (267)
T ss_pred             Cccceeeeeccccch---hhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccCcccccccc
Confidence            344555555555555   7776654332211   1  12359999999998887777655543 2221111111000000


Q ss_pred             CCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhh
Q 013568          333 DPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQ  367 (440)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~  367 (440)
                      +     ...+......+.+|++..|..++....+.
T Consensus        78 ~-----~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL  107 (267)
T PF07672_consen   78 N-----STLSKKPSYKSILKEKETWKWILIYGIWL  107 (267)
T ss_pred             c-----ccccccchHHHHHccchHHHHHHHHHHHh
Confidence            0     00111245677899999888765444433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=94.82  E-value=0.11  Score=50.80  Aligned_cols=155  Identities=17%  Similarity=0.220  Sum_probs=75.9

Q ss_pred             HHHHHHHHHH-hhhHHHHHHHHH---HHhcCCChhhhHHHHHhhhhhHHHH-hhhhhhcccc----CcCCCCcchhhhHH
Q 013568          138 VAMVYFVQGV-LGLARLAVNFYL---KDDLHLDPAETAVISGFSSLPWLIK-PLYGFISDSL----PLFGYRRRSYLVLS  208 (440)
Q Consensus       138 ~~~~~~~~~~-~~~~~~~l~~~l---~~~~g~s~~~~g~~~s~~~l~~~~~-~~~g~l~Dr~----~~~G~~rr~~l~~~  208 (440)
                      ..+.+....+ .+.+.-|.|.++   .+..|.+..+.-++..++..+..++ .++|.++|++    +..| +-|.--+.+
T Consensus       249 ~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~-~~~~~q~~~  327 (493)
T KOG1330|consen  249 SSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSG-TLRASQLSA  327 (493)
T ss_pred             ehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhccccc-chhHHHHHH
Confidence            3444443333 344444444333   2323434433334444445555554 4669999985    2222 111111111


Q ss_pred             H---HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh-hhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHH
Q 013568          209 G---LLGALSWSLMATIVESKYSAALSILLGSLSVAF-SDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYF  284 (440)
Q Consensus       209 ~---~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i  284 (440)
                      .   .+.+....+......+.....+..++.|..... ......-+..++.|++.|..+.++......  .+|..-+|.+
T Consensus       328 ~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h--~fgd~~~p~i  405 (493)
T KOG1330|consen  328 ALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEH--IFGDAASPYI  405 (493)
T ss_pred             hhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHH--HhccCCCcce
Confidence            1   111112222221222222233333444444433 344555567888899999988877754433  4677778878


Q ss_pred             HHHhhhcc-chH
Q 013568          285 SGSMVDAY-GVR  295 (440)
Q Consensus       285 ~g~l~~~~-gw~  295 (440)
                      .|.+.++. ||+
T Consensus       406 vGilsd~l~g~~  417 (493)
T KOG1330|consen  406 VGILSDKLRGYK  417 (493)
T ss_pred             ehhHHHHhhCCC
Confidence            89888753 565

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=94.81  E-value=0.072  Score=53.02  Aligned_cols=74  Identities=16%  Similarity=0.222  Sum_probs=58.2

Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 013568          234 LLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSG  310 (440)
Q Consensus       234 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~  310 (440)
                      ++.|.+.-.......++.+++..+.+++...+++++...   ++..+||++...+....|.|+...+.+...++...
T Consensus       396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s---~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~  469 (488)
T KOG2325|consen  396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGS---IARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAA  469 (488)
T ss_pred             heeccccccccchHHHHHHHHhCCccccceeEEEEeccc---hhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHH
Confidence            444555555566788899999999999999999988877   99999999999998888988887776655544433

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=94.69  E-value=1.4  Score=41.51  Aligned_cols=44  Identities=9%  Similarity=0.093  Sum_probs=35.9

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHH
Q 013568          385 GFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIF  428 (440)
Q Consensus       385 g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~  428 (440)
                      ++.-..+|.++..++++..+.+.+.|-+.+++||-.++..+.+.
T Consensus       306 ~~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv  349 (390)
T KOG3097|consen  306 ALGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVV  349 (390)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHH
Confidence            44557889999999999888888999999999988877665443

>TIGR00806 rfc RFC reduced folate carrier

Probab=94.59  E-value=0.045  Score=54.34  Aligned_cols=80  Identities=13%  Similarity=0.071  Sum_probs=59.7

Q ss_pred             hhhhHHHHHhhhccccccceeeeeeeccCCCChhh-HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhh
Q 013568          356 VFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEF-LGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGM  434 (440)
Q Consensus       356 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~  434 (440)
                      ...+|+|.|+-.+=........ ++.+++|++..+ .|.+...+..+.++..++.|++.||+|.|+++.++.++..++.+
T Consensus        29 ~~~lC~fGF~~e~R~n~s~a~p-~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~  107 (511)
T TIGR00806        29 VLYLCFYGFMAQFRPGESFITP-YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWL  107 (511)
T ss_pred             HHHHHHHHHHHHhhchHHHHHH-HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            3445666666554222111222 334689999999 99999999999999999999999999999999988877766655


Q ss_pred             hh
Q 013568          435 TQ  436 (440)
Q Consensus       435 ~~  436 (440)
                      +.
T Consensus       108 L~  109 (511)
T TIGR00806       108 LL  109 (511)
T ss_pred             HH
Confidence            43

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.25  E-value=0.013  Score=60.03  Aligned_cols=156  Identities=15%  Similarity=0.172  Sum_probs=0.0

Q ss_pred             CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH--HhhhhhhccccCcCCCCcchhhhH
Q 013568          131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI--KPLYGFISDSLPLFGYRRRSYLVL  207 (440)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~--~~~~g~l~Dr~~~~G~~rr~~l~~  207 (440)
                      .++.++...+......+. ..+...+|.|++.+|++++.+++++.++..++.+.  ..++|++..|+. .+  .|..+..
T Consensus       303 ~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~k-l~--~~~~~~~  379 (539)
T PF03137_consen  303 TNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFK-LS--ARGAAKF  379 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEec-Cc--HHHHHHH
Confidence            344455555555555554 56777999999999999999999999888887665  457799999972 22  2222222


Q ss_pred             HHHHHHHHHHH---HHh--hh--------chh----------------------------------------HHHHHHHH
Q 013568          208 SGLLGALSWSL---MAT--IV--------ESK----------------------------------------YSAALSIL  234 (440)
Q Consensus       208 ~~~~~~~~~~~---~~~--~~--------~~~----------------------------------------~~~~~~~~  234 (440)
                      ..+...++.+.   ..+  +.        .++                                        ...++..+
T Consensus       380 ~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~  459 (539)
T PF03137_consen  380 CIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLF  459 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHH
Confidence            22222111111   110  00        000                                        01122223


Q ss_pred             HHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc
Q 013568          235 LGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA  291 (440)
Q Consensus       235 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~  291 (440)
                      +..+..+...+......-...++++|+.+.++......  .+|.+-||++.|.+++.
T Consensus       460 ~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~r--llg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  460 ILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIR--LLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ---------------------------------------------------------
T ss_pred             HHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHH--hhcCcchHHHHhHHHhh
Confidence            33333344444555566678888999999888865443  37888899999988874

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=94.01  E-value=0.25  Score=36.63  Aligned_cols=55  Identities=13%  Similarity=0.152  Sum_probs=46.8

Q ss_pred             eccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhhh
Q 013568          381 TNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMT  435 (440)
Q Consensus       381 ~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~~  435 (440)
                      .++.++|..+.|++.+...+|.++|.+...++.++.+.++.+..+.++..+....
T Consensus        19 ~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~   73 (85)
T PF06779_consen   19 QADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAA   73 (85)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            3788999999999999999999999999999988878788888777766655543

Note that many members are hypothetical proteins.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.81  E-value=0.22  Score=49.74  Aligned_cols=147  Identities=17%  Similarity=0.206  Sum_probs=84.8

Q ss_pred             CChhhhHHHHHhhhhhHHHH-hhh-hhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhc---------hhHHHHHHH
Q 013568          165 LDPAETAVISGFSSLPWLIK-PLY-GFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVE---------SKYSAALSI  233 (440)
Q Consensus       165 ~s~~~~g~~~s~~~l~~~~~-~~~-g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~  233 (440)
                      .++...|.+..+..++..++ .++ -++.++      +.|.++....++.++..+.-..+..         +.+..+.--
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~------~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~  325 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNW------SWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDT  325 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhH
Confidence            88888887765555555553 344 555554      3455555554444433221110111         112223333


Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccc--------hHHHHHHHHHHH
Q 013568          234 LLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG--------VRFVFGVTALLP  305 (440)
Q Consensus       234 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~g--------w~~~f~i~~~~~  305 (440)
                      ++..+.......+...+++++.|+...|...++.   .+..|+|..++..++..+.+.++        -.+..++..++.
T Consensus       326 ~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall---~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~  402 (433)
T PF03092_consen  326 ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALL---ASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQ  402 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHH
Confidence            5566666666777888999999998777554444   45556999999999998876554        223344445555


Q ss_pred             HHHHHhheeeccccc
Q 013568          306 LITSGVAVLVKEQQV  320 (440)
Q Consensus       306 ~~~~~~~~~~~e~~~  320 (440)
                      ++.+.+..++|++++
T Consensus       403 ll~l~ll~lLp~~~~  417 (433)
T PF03092_consen  403 LLPLPLLFLLPPQKR  417 (433)
T ss_pred             HHHHHHHHHcCCCch
Confidence            444445556676443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=92.27  E-value=3.1  Score=41.55  Aligned_cols=83  Identities=23%  Similarity=0.176  Sum_probs=58.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHH------hhhccchHHHH
Q 013568          225 SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS------MVDAYGVRFVF  298 (440)
Q Consensus       225 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~------l~~~~gw~~~f  298 (440)
                      +.+.++...+++++|.=+..+...+++....|+.-.+..++.+-....   .|..++..+++.      ..+.......|
T Consensus       393 s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a---~~~~l~g~va~~~~~~~~~~~~~~~~~~F  469 (498)
T COG3104         393 SVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVA---AGQTLGGQVAGLTAVTDPAYTAFIEGRVF  469 (498)
T ss_pred             CHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHH---HHHHhhceecccccccchhhhhhhhhhhH
Confidence            456778888999999999999999999999999777766666655444   555555555542      22234456677


Q ss_pred             HHHHHHHHHHHH
Q 013568          299 GVTALLPLITSG  310 (440)
Q Consensus       299 ~i~~~~~~~~~~  310 (440)
                      +..+....+..+
T Consensus       470 ~~~g~v~i~~~~  481 (498)
T COG3104         470 GTIGVVAIVIGI  481 (498)
T ss_pred             HHHHHHHHHHHH
Confidence            777766655444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=90.58  E-value=2.8  Score=41.66  Aligned_cols=124  Identities=16%  Similarity=0.168  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHH--HHHh-hhch--
Q 013568          152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWS--LMAT-IVES--  225 (440)
Q Consensus       152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~--~~~~-~~~~--  225 (440)
                      ...+..|++.. |+++..+|..-+...+.... ..++.++.+|   .| -.|.-+ .+...-.++..  ...+ ...+  
T Consensus       278 ~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r---iG-lvr~G~-~~l~~q~~~L~~~v~~~~~~~~~~  351 (432)
T PF06963_consen  278 GGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR---IG-LVRAGL-WSLWWQWVCLALCVVSFWAPGSPF  351 (432)
T ss_pred             cHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc-chhhHH-HHHHHHHHHHHHHHHHHhcCCCCc
Confidence            44566778885 99999999886666665555 4566777777   45 233222 22222111111  1111 1221  


Q ss_pred             ----hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHH
Q 013568          226 ----KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYF  284 (440)
Q Consensus       226 ----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i  284 (440)
                          ...++.+..+.=+|.=..+....-++-|..|+++||..+++......   +-..+.-.+
T Consensus       352 ~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~---lf~ll~~~~  411 (432)
T PF06963_consen  352 SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQS---LFELLSFVL  411 (432)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHH---HHHHHHHHH
Confidence                12223333444455556777888889999999999998888876666   555554443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=89.92  E-value=10  Score=37.34  Aligned_cols=96  Identities=15%  Similarity=0.100  Sum_probs=55.3

Q ss_pred             hhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhh
Q 013568          169 ETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVV  247 (440)
Q Consensus       169 ~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  247 (440)
                      -.|.+-++..+..++ ....|.+..++.++|   ...+....++.+.+.++++ ..++.+...++.++.+..+.+..+.+
T Consensus       286 YNG~VeA~~tllgA~~al~~g~v~~~w~~~~---~l~l~~~S~l~a~~L~lm~-~t~~Iwv~Y~~yIif~~~y~fliTiA  361 (412)
T PF01770_consen  286 YNGAVEAASTLLGAIAALLAGYVKVNWDRWG---ELALGVFSLLQAGLLFLMS-FTGNIWVCYAGYIIFRSLYMFLITIA  361 (412)
T ss_pred             cchHHHHHHHHHHHHHHHHHhHhhcchHHHH---HHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346665555555454 556688755432222   1122222233344444555 67888888888888888887777776


Q ss_pred             hHHHHhhhcccccccchhhhH
Q 013568          248 DSMVVERARGESQSVSGSLQS  268 (440)
Q Consensus       248 ~~~~~~~~~~~~r~~~~~~~~  268 (440)
                      ..-++.-...+.-+...++..
T Consensus       362 ~~qIA~~l~~e~yaLVFGiNt  382 (412)
T PF01770_consen  362 SFQIAKNLSEERYALVFGINT  382 (412)
T ss_pred             HHHHHHhccccceeeeeeeHH
Confidence            666666666665554444443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=88.55  E-value=6.8  Score=35.73  Aligned_cols=93  Identities=15%  Similarity=0.154  Sum_probs=39.9

Q ss_pred             hHHHHhhh-hhhccccCcCCCCcchhhhHH----HHHHHHHHHHHHhhhch----hHHHHHHHHHHHHHHHhhhhhhhHH
Q 013568          180 PWLIKPLY-GFISDSLPLFGYRRRSYLVLS----GLLGALSWSLMATIVES----KYSAALSILLGSLSVAFSDVVVDSM  250 (440)
Q Consensus       180 ~~~~~~~~-g~l~Dr~~~~G~~rr~~l~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~~l~g~~~~~~~~~~~~~  250 (440)
                      ++.++|+. |++...-    ++||+++...    .++.+++.++......+    .....+.-++.|++.=..+++.-.+
T Consensus       153 g~~~G~~~ig~~nkt~----~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ViL~l  228 (267)
T PF07672_consen  153 GYFLGPFTIGLWNKTN----YKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVILNL  228 (267)
T ss_pred             HHhhhceeeccchhhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHHhcC
Confidence            33446644 7776542    4688877642    33333333332222222    2223334444444432232222222


Q ss_pred             HHhhhcccccccchhhhHHhhhhhhhH
Q 013568          251 VVERARGESQSVSGSLQSLCWGSSAFG  277 (440)
Q Consensus       251 ~~~~~~~~~r~~~~~~~~~~~~~~~~g  277 (440)
                      .-| ++.....+.+-.++..++.|++.
T Consensus       229 PhE-yK~~~pk~ig~~Fg~iWGfGY~~  254 (267)
T PF07672_consen  229 PHE-YKGYNPKKIGIQFGLIWGFGYIF  254 (267)
T ss_pred             hhh-hcCCCcceehhHHHHHHHHHHHH
Confidence            222 22333344556667777733333

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=88.40  E-value=2.2  Score=33.96  Aligned_cols=43  Identities=26%  Similarity=0.204  Sum_probs=31.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          389 EFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       389 ~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      ...+.......++..++..+.+.+.+..+.+..+.....+..+
T Consensus        87 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (141)
T TIGR00880        87 VALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA  129 (141)
T ss_pred             HHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHH
Confidence            3456667778888999999999999988877766665544443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.34  E-value=1.4  Score=46.15  Aligned_cols=65  Identities=14%  Similarity=0.168  Sum_probs=51.4

Q ss_pred             CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-H-hhhhhhccccC
Q 013568          131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-K-PLYGFISDSLP  195 (440)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~-~~~g~l~Dr~~  195 (440)
                      .++.++...+...+.... ..+..++|.|++++||++...+..+++...++.+. + .++|.+..|+.
T Consensus       390 ~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk  457 (735)
T KOG3626|consen  390 SNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK  457 (735)
T ss_pred             cCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence            445566666666666665 57778999999999999999999999888888765 5 46799999973

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=86.22  E-value=38  Score=33.79  Aligned_cols=31  Identities=6%  Similarity=-0.077  Sum_probs=21.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcc
Q 013568          226 KYSAALSILLGSLSVAFSDVVVDSMVVERARG  257 (440)
Q Consensus       226 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  257 (440)
                      +...++..++.|++.+.......++.+.. |+
T Consensus       106 f~~~~~~v~~~g~~~~~~q~s~~gla~~f-p~  136 (437)
T TIGR00939       106 FVTTMASVVIINSGMALLQGSLFGLAGVF-PS  136 (437)
T ss_pred             HHHHHHHHHHHHhhhhhhcccchhhcccC-CH
Confidence            34445666778888888877777777644 44

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=85.36  E-value=2.6  Score=38.27  Aligned_cols=123  Identities=13%  Similarity=0.259  Sum_probs=71.0

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHHHhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLG  212 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~  212 (440)
                      .+.-+.+.|+..-.. .+....++.+..++++++....+++   ..+.|..+.....+-.-.+--|.|.|.+.-.+.+..
T Consensus       202 ~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAll---P~v~Yl~SF~VS~v~~eipwngkrlKayYsaGgiiw  278 (412)
T KOG4830|consen  202 QFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALL---PMVAYLSSFSVSMVNSEIPWNGKRLKAYYSAGGIIW  278 (412)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhh---HHHHHHhhhhHHhhcccCCcCcceeeeeeecccHHH
Confidence            345566677666554 5666677777777777777766665   334444333333333333333434455555566555


Q ss_pred             HHHHHHHHhhhchhH-HHHHHHHHHHHHHHhhhhhhhHHHHhhhcccc
Q 013568          213 ALSWSLMATIVESKY-SAALSILLGSLSVAFSDVVVDSMVVERARGES  259 (440)
Q Consensus       213 ~~~~~~~~~~~~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  259 (440)
                      ..|...+....+..- .+++.-++.|++.+........+.+++...+.
T Consensus       279 ifcga~ilLlpr~i~symyAisvfIGIAnAimlvtslsitavli~~~~  326 (412)
T KOG4830|consen  279 IFCGAVILLLPRGIKSYMYAISVFIGIANAIMLVTSLSITAVLINKNT  326 (412)
T ss_pred             HHhhhheeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            555444432344332 23445577888888887777777777776654

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=85.06  E-value=10  Score=37.78  Aligned_cols=58  Identities=14%  Similarity=0.146  Sum_probs=45.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHH
Q 013568          225 SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS  285 (440)
Q Consensus       225 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~  285 (440)
                      +-+..++..++.|+..|........+..+..++++|..++.+.+++..   +|-.+|..++
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~---~Gl~~Gs~l~  428 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLL---VGLALGAVLS  428 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            334556677899999999888888888888888899888888877776   7777766654

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=83.42  E-value=16  Score=36.79  Aligned_cols=62  Identities=16%  Similarity=0.120  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccch
Q 013568          230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGV  294 (440)
Q Consensus       230 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw  294 (440)
                      ++.-++..+......++..++-+.+.++.--|+.|.+.+....   +|+---..+.-++++.+.+
T Consensus       409 I~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSN---LGGtWP~~~vL~lVD~fT~  470 (544)
T PF13000_consen  409 IIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSN---LGGTWPRTFVLWLVDYFTV  470 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHh---cCCCchHHHHHHHhhhccc
Confidence            3444566666666778888899999999988888887775544   7765544455455544443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=82.75  E-value=1.2  Score=40.69  Aligned_cols=57  Identities=12%  Similarity=0.113  Sum_probs=43.3

Q ss_pred             eeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhh
Q 013568          378 YFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGM  434 (440)
Q Consensus       378 ~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~  434 (440)
                      |+.-+.+|+...++|.+++......++.+.+.|-+.||-|||+.-+..++...++++
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi  117 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI  117 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH
Confidence            444467899999999988776666666667788899999999987776666555544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=82.54  E-value=3.5  Score=37.62  Aligned_cols=53  Identities=15%  Similarity=0.181  Sum_probs=44.8

Q ss_pred             ccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhhh
Q 013568          382 NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMT  435 (440)
Q Consensus       382 ~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~~  435 (440)
                      +.+|+|..+...+.....+|..+| ++.|.+.|++|.+..+.++.+...+.+..
T Consensus        30 ~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~   82 (250)
T PF06813_consen   30 SRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGL   82 (250)
T ss_pred             HHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            678999999999999989988876 78899999999999988887777665544

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=81.30  E-value=0.49  Score=42.80  Aligned_cols=75  Identities=21%  Similarity=0.332  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-Hhhhhhhccc------cCcCCCCcchhhhHHH
Q 013568          138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDS------LPLFGYRRRSYLVLSG  209 (440)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr------~~~~G~~rr~~l~~~~  209 (440)
                      ..++.+.+-+. +.-.+.+..++++ .|+++...+.+..+..+.-++ .|+.|.++|.      +.++| ||+.+-..+.
T Consensus        22 yGvGHmlNDitAScWFTYlllfltq-iglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G-~~~~wh~~gt   99 (412)
T KOG4830|consen   22 YGVGHMLNDITASCWFTYLLLFLTQ-IGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIG-RRMSWHLIGT   99 (412)
T ss_pred             echhHHHhhHHHHHHHHHHHHHHHH-hcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhc-ceeeeeeccc
Confidence            44455555554 3444456667777 599998887776666666666 6676755543      12367 7776666665


Q ss_pred             HHHHH
Q 013568          210 LLGAL  214 (440)
Q Consensus       210 ~~~~~  214 (440)
                      ++..+
T Consensus       100 ~lVsl  104 (412)
T KOG4830|consen  100 VLVSL  104 (412)
T ss_pred             EEEEE
Confidence            44433

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=80.40  E-value=60  Score=31.62  Aligned_cols=165  Identities=16%  Similarity=0.158  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhH-HHHhhhhhhccccCcCCCCcchhhhHHHHH----
Q 013568          138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPW-LIKPLYGFISDSLPLFGYRRRSYLVLSGLL----  211 (440)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~-~~~~~~g~l~Dr~~~~G~~rr~~l~~~~~~----  211 (440)
                      +.++|+..... -.-......++.+-.|-|-..++..-.+-.... .++|+.|...|+.     .|++++.....+    
T Consensus        32 Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~-----sr~Kvi~~~L~lqNlS  106 (503)
T KOG2601|consen   32 LYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGM-----SRVKVIQTWLLLQNLS  106 (503)
T ss_pred             hhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcch-----hHHHHHHHHHhhccHH
Confidence            45556655554 233334444555533322222222111122222 2388889999984     466666544332    


Q ss_pred             --HHHHHHHHHhhhc-----hhHHHHHHHHHHHHHHHhhhh--hhhH--HHHhhh----cccccccchhhhHHhhhhhhh
Q 013568          212 --GALSWSLMATIVE-----SKYSAALSILLGSLSVAFSDV--VVDS--MVVERA----RGESQSVSGSLQSLCWGSSAF  276 (440)
Q Consensus       212 --~~~~~~~~~~~~~-----~~~~~~~~~~l~g~~~~~~~~--~~~~--~~~~~~----~~~~r~~~~~~~~~~~~~~~~  276 (440)
                        .+.+.++..+..+     +...+..+.++.-...+....  ....  +-.||.    ..+.+.....+.+.....-..
T Consensus       107 v~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~  186 (503)
T KOG2601|consen  107 VIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQS  186 (503)
T ss_pred             HHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhh
Confidence              2222222222333     444444554444333332211  1111  112221    334444333333333333336


Q ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 013568          277 GGIVSSYFSGSMVDAYGVRFVFGVTALLPLI  307 (440)
Q Consensus       277 g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~  307 (440)
                      -.+++|.+.|.+++..+-|..-.+.++..++
T Consensus       187 tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  187 TNLLAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             hhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence            6788999999998887777655555544444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	440
2cfq_A	417	Lactose permease; transport, transport mechanism,	1e-05
2cfq_A	417	Lactose permease; transport, transport mechanism,	2e-04
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 36/276 (13%), Positives = 87/276 (31%), Gaps = 25/276 (9%)

Query: 158 YLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS- 215
           +L D  H+  ++T +I    SL  L+ +PL+G +SD     G R+    +++G+L   + 
Sbjct: 33  WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK---LGLRKYLLWIITGMLVMFAP 89

Query: 216 ----WSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCW 271
                            + +  +            V++ + + +R  +       ++  +
Sbjct: 90  FFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFG---RARMF 146

Query: 272 GSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPL 331
           G    G  + +   G M         +  +    ++   +                +  +
Sbjct: 147 GC--VGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAK-------TDAPSSATV 197

Query: 332 GDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFY-FTT---NELGFT 387
            +      S  ++    E  +QP ++  +L+V     T       F  F T         
Sbjct: 198 ANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQG 257

Query: 388 PEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFL 423
               G V  +  + +   +      +  +  +   L
Sbjct: 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALL 293

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 5/115 (4%)

Query: 202 RSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQS 261
           ++ L+L+G + ++     +    S     +   L    V F  V     +  +       
Sbjct: 289 KNALLLAGTIMSVRIIGSS-FATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR--- 344

Query: 262 VSGSLQSLCWG-SSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLV 315
            S ++  +C+        I  S  +G+M ++ G +  + V  L+ L  + ++V  
Sbjct: 345 FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 25/181 (13%), Positives = 62/181 (34%), Gaps = 14/181 (7%)

Query: 157 FYLKDDLHLDPAETAVISGFSSLPWLI----KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212
            YLK+  H    +++       L          L G++SD +            ++ +  
Sbjct: 277 TYLKEVKHFALDKSSW---AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 333

Query: 213 ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWG 272
           A           +     + +++    +    +++    +E A  ++   +     L   
Sbjct: 334 ATI-VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF-- 390

Query: 273 SSAFGGIVSSYFSGSMVDAYG---VRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNL 329
               G + +S   G  VD +G      V    ++L +I   + V++ E++      ++ +
Sbjct: 391 GYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL-IVVMIGEKRRHEQLLQELV 449

Query: 330 P 330
           P
Sbjct: 450 P 450

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 63/416 (15%), Positives = 122/416 (29%), Gaps = 107/416 (25%)

Query: 60  FKKKDMSVAVPITAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPSKSSPHESRY 119
           ++ KD+   + +   +   +   K + D      K  +   + +  + +    S   +  
Sbjct: 16  YQYKDI---LSVFEDAFVDNFDCKDVQDMP----KSILSKEEIDHIIMSKDAVS--GTLR 66

Query: 120 LSNGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNF-YLKDDLHLDPAETAVIS-GFS 177
           L      F   LS     V    FV+ VL      +N+ +L   +  +  + ++++  + 
Sbjct: 67  L------FWTLLSKQEEMVQK--FVEEVL-----RINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 178 SLPWLIKPLYG----FISDSLP-----------LFGYRRRSYLVLSGLLGALSWSLMATI 222
                   LY     F   ++            L   R    +++ G+LG+    +   +
Sbjct: 114 EQ---RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 223 VES-----------------KYSAALSIL--LGSLSVAFS---DVVVDSMVVERARGESQ 260
             S                   ++  ++L  L  L            D       +    
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS--SNIKLRIH 228

Query: 261 SVSGSLQSLCWGSSAFGG---IVSSYFSGSMVDAYGV--------RFVFGVTALLPLITS 309
           S+   L+ L   S  +     ++ +  +    +A+ +        RF   VT  L   T+
Sbjct: 229 SIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK-QVTDFLSAATT 286

Query: 310 GVAVLVKEQQVLGPS------------RRQNLP----LGDP---SFFESSKQNMFQLWEA 350
               L      L P             R Q+LP      +P   S    S ++    W+ 
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 351 VKQPNV--FLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLL 404
            K  N       +   L    P     MF      L   P         T + SL+
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFD----RLSVFPP---SAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	440
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.93
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.9
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.88
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.83
2xut_A	524	Proton/peptide symporter family protein; transport	99.78
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.78
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.48
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.36
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.34
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.04
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.9
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.84
2xut_A	524	Proton/peptide symporter family protein; transport	98.37

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=8.5e-26  Score=223.49  Aligned_cols=278  Identities=14%  Similarity=0.141  Sum_probs=212.3

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG  212 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~  212 (440)
                      ++.+++.++..++. +.....+|. +.+++|++..+.|++.+++.+++.+ ++++|+++||   +|  ||+.++++.++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr---~g--~r~~l~~~~~~~  101 (438)
T 3o7q_A           28 FALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK---LS--YKAGIITGLFLY  101 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH---SC--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH---hc--chHHHHHHHHHH
Confidence            44556666777776 455555555 5555999999999999999999988 8999999999   45  888888888888


Q ss_pred             HHHHHHH---HhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhh
Q 013568          213 ALSWSLM---ATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV  289 (440)
Q Consensus       213 ~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~  289 (440)
                      +++.+++   . ..++++.++++|++.|++.+...+...+++.|++|+++|+++.++.+.+..   +|.++++.+++++.
T Consensus       102 ~~~~~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          102 ALGAALFWPAA-EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS---FGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHH---HHHHHHHHHTTHHH
T ss_pred             HHHHHHHHhcc-ccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            8887776   5 678899999999999999999999999999999999999999898888887   99999999999988


Q ss_pred             -hccc-------------------------hHHHHHHHHHHHHHHHHhheee--ccccccCCCcCCCCCCCCCccchhhH
Q 013568          290 -DAYG-------------------------VRFVFGVTALLPLITSGVAVLV--KEQQVLGPSRRQNLPLGDPSFFESSK  341 (440)
Q Consensus       290 -~~~g-------------------------w~~~f~i~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~  341 (440)
                       +..+                         ||+.|++.+++.++..+..++.  ||++..+++++            +.+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------------~~~  245 (438)
T 3o7q_A          178 LSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA------------KQG  245 (438)
T ss_dssp             HTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS------------STT
T ss_pred             hcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc------------ccc
Confidence             5544                         9999988877766655544433  33332111111            111


Q ss_pred             HHHHHHHHHhcCcchhhhHHHHHhhhcccccc-ceeeee-eeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCch
Q 013568          342 QNMFQLWEAVKQPNVFLPTLFVFLWQATPHSD-SAMFYF-TTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLR  419 (440)
Q Consensus       342 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r  419 (440)
                      ...+..++.+++|.++..++..+++....... .....+ ..+.+|+++.+.+.+.....++.+++.++.+++.||+++|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  325 (438)
T 3o7q_A          246 SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH  325 (438)
T ss_dssp             SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            22345667789999888776655544422112 222333 4466799999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhh
Q 013568          420 KIFLANTIFGTALGM  434 (440)
Q Consensus       420 ~~l~~~~~~~~~~~~  434 (440)
                      +.+..+.++.++..+
T Consensus       326 ~~~~~~~~~~~~~~~  340 (438)
T 3o7q_A          326 KVLAAYALIAMALCL  340 (438)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            998887776665544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.93  E-value=1.7e-25  Score=222.05  Aligned_cols=285  Identities=11%  Similarity=0.004  Sum_probs=211.9

Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568          135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG  212 (440)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~  212 (440)
                      ++.+++.++..++. ......++.+.++ + .+..+.|++.+++.+++.+ ++++|+++||   +|  ||++++++.++.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr---~g--~r~~l~~~~~~~  102 (451)
T 1pw4_A           30 FLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDR---SN--PRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH---SC--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh---cC--chHHHHHHHHHH
Confidence            44555666666665 4555556655554 7 9999999999999999988 8899999999   45  888888998888


Q ss_pred             HHHHHHHHhh----hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          213 ALSWSLMATI----VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       213 ~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      +++.++++ +    .++++.++++|++.|++.+...+...+++.|++|+++|+++.++...+..   +|.+++|.+++++
T Consensus       103 ~~~~~~~~-~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~---~g~~~g~~~~~~l  178 (451)
T 1pw4_A          103 AAVMLFMG-FVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHN---VGGGIPPLLFLLG  178 (451)
T ss_dssp             HHHHHHHH-HCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHH---HHHTSHHHHHHHH
T ss_pred             HHHHHHHH-hhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            88888877 6    78889999999999999999999999999999999999999999988887   9999999999998


Q ss_pred             hhccc-hHHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCC-C-cc--chhhHHHHHH--HHHHhcCcchhhhH
Q 013568          289 VDAYG-VRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGD-P-SF--FESSKQNMFQ--LWEAVKQPNVFLPT  360 (440)
Q Consensus       289 ~~~~g-w~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~~--~~~~l~~~~~~~~~  360 (440)
                      .+.+| ||+.|++.+++.++..+ ..+++||++......+.++.... + ..  .+..+...++  .++.+++|.++...
T Consensus       179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (451)
T 1pw4_A          179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIA  258 (451)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHH
Confidence            88898 99999999988776655 45567776553221111110000 0 00  0000111111  34567888888776


Q ss_pred             HHHHhhhccccc-cceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccC--CchhHHHHHHHHHH
Q 013568          361 LFVFLWQATPHS-DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNV--PLRKIFLANTIFGT  430 (440)
Q Consensus       361 l~~~~~~~~~~~-~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~--g~r~~l~~~~~~~~  430 (440)
                      +..++....... ......+..+.+|+++.+.+++....+++.+++.++.+++.||+  ++|+.+..+.++..
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          259 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            665554442211 22223344456899999999999999999999999999999999  99988877766655

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.90  E-value=2.3e-23  Score=201.93  Aligned_cols=257  Identities=12%  Similarity=0.073  Sum_probs=196.1

Q ss_pred             HHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHH
Q 013568          137 AVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGAL  214 (440)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~  214 (440)
                      .+++..+..++. +.....+|.+. +++|.+..+.+++.++..+++.+ ++++|+++||   +|  ||+.++.+.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr---~g--~r~~~~~~~~~~~~   77 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR---VG--RRPVILVGMSIFML   77 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT---SC--CCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--CchhHHHHHHHHHH
Confidence            345555666665 45555666654 55899999999999999999988 8899999999   45  77788888888888


Q ss_pred             HHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccch
Q 013568          215 SWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGV  294 (440)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw  294 (440)
                      +.+.++ +.++.+.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....   +|.+++|.+++++.+.+||
T Consensus        78 ~~~~~~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~l~~~~~~  153 (375)
T 2gfp_A           78 ATLVAV-TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGIL---VSPLLAPLIGGLLDTMWNW  153 (375)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHH---HHHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHH-HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHhccH
Confidence            877777 678889999999999999999999999999999999999999999988887   9999999999999998999


Q ss_pred             HHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccc-c
Q 013568          295 RFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH-S  372 (440)
Q Consensus       295 ~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~-~  372 (440)
                      |+.|++.+++.++..+ ..+++||++..++++++.            +   +..++.+++|.++...+..++...... .
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (375)
T 2gfp_A          154 RACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRL------------L---TSYKTLFGNSGFNCYLLMLIGGLAGIAAF  218 (375)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCCT------------T---TCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCcccCCCCcccccH------------H---HHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence            9999999888777766 455677765432211110            0   112234556666665554444333211 1


Q ss_pred             cceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 013568          373 DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPL  418 (440)
Q Consensus       373 ~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~  418 (440)
                      ......+..+.+|+++.+.+.+....+++.+++.++.+++.||+++
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~  264 (375)
T 2gfp_A          219 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  264 (375)
T ss_dssp             HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222333334578889999999999999999999999999999876

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.88  E-value=1.5e-21  Score=196.12  Aligned_cols=172  Identities=19%  Similarity=0.181  Sum_probs=144.0

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHh-----cCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhh
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDD-----LHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLV  206 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~-----~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~  206 (440)
                      .++.+.+..+...+. ......++.|++++     +|++..+.+++.+++.++..+ ++++|+++||+  +|  ||+.+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--~g--~r~~~~   89 (491)
T 4aps_A           14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRI--IG--ARPAVF   89 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SC--HHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cc--chHHHH
Confidence            455566666666665 46667888888887     999999999999999999888 88999999982  25  888888


Q ss_pred             HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccc--cccchhhhHHhhhhhhhHHHHHHHH
Q 013568          207 LSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGES--QSVSGSLQSLCWGSSAFGGIVSSYF  284 (440)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~~~~g~~ig~~i  284 (440)
                      .+.++..++.++++ ++++.+.++++|++.|++.+...+...+++.|++|+++  |+.+.++++....   +|.+++|.+
T Consensus        90 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~g~~~~~~~  165 (491)
T 4aps_A           90 WGGVLIMLGHIVLA-LPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGIN---LGAFIAPLI  165 (491)
T ss_dssp             HHHHHHHHHHHHHH-SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHH---HHHHHHHHH
Confidence            88888888888777 78889999999999999999999999999999999988  5556666666666   999999999


Q ss_pred             HHHhhhccchHHHHHHHHHHHHHHHHhhe
Q 013568          285 SGSMVDAYGVRFVFGVTALLPLITSGVAV  313 (440)
Q Consensus       285 ~g~l~~~~gw~~~f~i~~~~~~~~~~~~~  313 (440)
                      ++++.+..|||+.|++.++..++..+..+
T Consensus       166 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998877766655444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.83  E-value=2e-19  Score=180.48  Aligned_cols=283  Identities=13%  Similarity=0.094  Sum_probs=189.1

Q ss_pred             HHHHHHHHh-hhHHHHHHHHHHHhcCC--------ChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          140 MVYFVQGVL-GLARLAVNFYLKDDLHL--------DPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       140 ~~~~~~~~~-~~~~~~l~~~l~~~~g~--------s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      ++.+..|++ +.+...++..- ++++.        +..+.|++.+.+.++..+ .+++|+++||   +|  ||+.++++.
T Consensus        19 lg~~~~Gyd~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr---~G--Rk~~l~~~~   92 (491)
T 4gc0_A           19 LGGLLFGYDTAVISGTVESLN-TVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR---FG--RRDSLKIAA   92 (491)
T ss_dssp             HHHHHHHHHHHGGGGTHHHHH-HHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH---TC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--CHHHHHHHH
Confidence            445666666 45555555443 33432        235678888999999988 6788999999   56  888999998


Q ss_pred             HHHHHHHHHHHh-----------------hhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhh
Q 013568          210 LLGALSWSLMAT-----------------IVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWG  272 (440)
Q Consensus       210 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  272 (440)
                      ++..++.++.++                 ++++.+.++++|++.|++.|...+....+++|+.|+++|++..++.+.+..
T Consensus        93 ~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~  172 (491)
T 4gc0_A           93 VLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAII  172 (491)
T ss_dssp             HHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhh
Confidence            888888777663                 367889999999999999999999999999999999999999999888877


Q ss_pred             hhhhHHHHHHHHHHHhhh--------ccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCC----CCC---Cccc
Q 013568          273 SSAFGGIVSSYFSGSMVD--------AYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLP----LGD---PSFF  337 (440)
Q Consensus       273 ~~~~g~~ig~~i~g~l~~--------~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~----~~~---~~~~  337 (440)
                         +|.++++.++..+..        ..+||+.+.+..+..++.++..+++||+|+....+.+.++    .++   +...
T Consensus       173 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~  249 (491)
T 4gc0_A          173 ---FGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLA  249 (491)
T ss_dssp             ---HHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ---hhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence               888888877776643        2458888888888877777788889998754221111100    000   0000


Q ss_pred             -hh---hHHHHHH------HHHHhcCcchhhhHHHHHhhhccccccceeeee---eeccCCCChhhHHHHHHHHHHHHHH
Q 013568          338 -ES---SKQNMFQ------LWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYF---TTNELGFTPEFLGRVKFVTSVASLL  404 (440)
Q Consensus       338 -~~---~~~~~~~------~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~g~s~~~~g~~~~~~~i~~~~  404 (440)
                       +.   .++....      .....+.++........++.+..  ......++   ..+..+.+...........++..++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (491)
T 4gc0_A          250 TQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFV--GINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLT  327 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHh--hhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHH
Confidence             00   0000000      01112233333333222222221  11111111   1245677777777777888899999


Q ss_pred             HHHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013568          405 GVGLYNGFLKNVPLRKIFLANTIFGTALG  433 (440)
Q Consensus       405 g~~~~~~l~~r~g~r~~l~~~~~~~~~~~  433 (440)
                      +.++++++.||+|||+.++.+..++.+..
T Consensus       328 ~~~~~~~l~dr~Grr~~~~~~~~~~~~~~  356 (491)
T 4gc0_A          328 FTVLAIMTVDKFGRKPLQIIGALGMAIGM  356 (491)
T ss_dssp             HHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCcchhccchHHHHHHH
Confidence            99999999999999999887766655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.78  E-value=2.4e-18  Score=174.24  Aligned_cols=175  Identities=16%  Similarity=0.167  Sum_probs=143.6

Q ss_pred             cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcC------CChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhh
Q 013568          134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLH------LDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYL  205 (440)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g------~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l  205 (440)
                      .++.+.+..++..+. ......++.|+++++|      ++..+.+++.+++.+++.+ .+++|+++||+  +|  ||+.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~--~g--~r~~~   88 (524)
T 2xut_A           13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRF--FG--KYNTI   88 (524)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTS--SC--SHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc--chHHH
Confidence            444455555555555 5666788889988899      9999999999999999888 78999999992  27  77788


Q ss_pred             hHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHH
Q 013568          206 VLSGLLGALSWSLMATIVE-SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYF  284 (440)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i  284 (440)
                      .++.++..++.++++ +.+ +.+.+++.|++.|++.+...+...+++.|++|+++|+++.+.++......++|.++||.+
T Consensus        89 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~  167 (524)
T 2xut_A           89 LWLSLIYCVGHAFLA-IFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS  167 (524)
T ss_dssp             HHHHHHHHHHHHHHH-HTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888877777 566 888899999999999999999999999999999999887777444444455999999999


Q ss_pred             HHHhhhccchHHHHHHHHHHHHHHHHhhe
Q 013568          285 SGSMVDAYGVRFVFGVTALLPLITSGVAV  313 (440)
Q Consensus       285 ~g~l~~~~gw~~~f~i~~~~~~~~~~~~~  313 (440)
                      ++++.+..||++.|++.+++.++..+..+
T Consensus       168 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          168 MPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             STHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            99999889999999998887766655443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.78  E-value=1.4e-19  Score=178.09  Aligned_cols=285  Identities=15%  Similarity=0.164  Sum_probs=162.9

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG  209 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~  209 (440)
                      ++.++.+...++..... +.....++.|+++++|++..+.|++.+++.+++.+ +|++|+++||   +|  ||+.++.+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr---~G--rr~~l~~~~   80 (417)
T 2cfq_A            6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK---LG--LRKYLLWII   80 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT---ST--TCCHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--chHHHHHHH
Confidence            34566666655555544 56677889999888999999999999999999888 8999999999   56  666666655


Q ss_pred             HHHHHHHHHHH--hhhchh-HHHHHHHHHHHHHHHhhhhhhhHHHHhhhcc--cccccchhhhHHhhhhhhhHHHHHHHH
Q 013568          210 LLGALSWSLMA--TIVESK-YSAALSILLGSLSVAFSDVVVDSMVVERARG--ESQSVSGSLQSLCWGSSAFGGIVSSYF  284 (440)
Q Consensus       210 ~~~~~~~~~~~--~~~~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~ig~~i  284 (440)
                      .+..++...+.  ...... ......+++.+++.+...+.......++.++  ++++...+.......   +|..++|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~g~~~~~~l  157 (417)
T 2cfq_A           81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGC---VGWALGASI  157 (417)
T ss_dssp             HHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTT---THHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHH---HHHHHHHHH
Confidence            54433211111  011111 0112233333333332222222333333332  234444444444444   899999999


Q ss_pred             HHHhhhccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHH
Q 013568          285 SGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF  364 (440)
Q Consensus       285 ~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  364 (440)
                      ++++.+ .+|++.|++.++..++..+..++.+|++.+..+++++.+.+++      +...++.++.+++|.++...+..+
T Consensus       158 ~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  230 (417)
T 2cfq_A          158 VGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHS------AFSLKLALELFRQPKLWFLSLYVI  230 (417)
T ss_dssp             HHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCC------CCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccc------cccHHHHHHHhcCCchhhHHHHHH
Confidence            999886 5899999987766544444444444433211100000000000      011234456778888776654433


Q ss_pred             hhhcccc-ccceeeeeeeccCC---CChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568          365 LWQATPH-SDSAMFYFTTNELG---FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA  431 (440)
Q Consensus       365 ~~~~~~~-~~~~~~~~~~~~~g---~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~  431 (440)
                      ....... ....+..++.+.++   .+....++......++.+++.++.+++.||+|+|+.+..+.++.++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~  301 (417)
T 2cfq_A          231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSV  301 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence            3221100 11112222223333   2244557777778888889999999999999999988876665554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.48  E-value=2.5e-13  Score=134.17  Aligned_cols=177  Identities=14%  Similarity=0.081  Sum_probs=138.1

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcC-CCCcchhhhHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLF-GYRRRSYLVLS  208 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~-G~~rr~~l~~~  208 (440)
                      ++.++.+.+..++.... .....++|.++++.+|.+..+.+++.++..++..+ .++.|+++||+  . |  ||+.+..+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~--~~~--~~~~~~~~  326 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV--FRG--NRGATGVF  326 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--STT--CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcC--CchhHHHH
Confidence            44666666666666655 56777889999887899999999999888888777 78889999993  1 4  56666555


Q ss_pred             HHHHH-HHHHHHHhhh--chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhh-HHHHHHHH
Q 013568          209 GLLGA-LSWSLMATIV--ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAF-GGIVSSYF  284 (440)
Q Consensus       209 ~~~~~-~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-g~~ig~~i  284 (440)
                      ..+.. ++.+.+. +.  .+.+.+.++.++.|++.+...+....++.|..|+++|+++.++.+....   + |..++|.+
T Consensus       327 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~g~~~~~~~  402 (451)
T 1pw4_A          327 FMTLVTIATIVYW-MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY---LGGSVAASAI  402 (451)
T ss_dssp             HHHHHHHHHHHTT-SCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHH---HHHHHHHHHH
Confidence            55544 5544444 33  2556667777888888888888888999999999999999998887777   8 99999999


Q ss_pred             HHHhhhccchHHHHHHHHHHHHHHHHhheeec
Q 013568          285 SGSMVDAYGVRFVFGVTALLPLITSGVAVLVK  316 (440)
Q Consensus       285 ~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~  316 (440)
                      .|++.+..||+..|++.+++.++..+..++++
T Consensus       403 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          403 VGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888877766554433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.36  E-value=1.1e-11  Score=121.66  Aligned_cols=180  Identities=11%  Similarity=0.063  Sum_probs=123.6

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCC---ChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhh
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHL---DPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLV  206 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~---s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~  206 (440)
                      +++++...+..+..... .....++|.|+.+.++.   +....++..++..+...+ .++.|+++||   +|  ||+.+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr---~g--~~~~l~  293 (417)
T 2cfq_A          219 QPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR---IG--GKNALL  293 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HC--HHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--HHHHHH
Confidence            34455444443333322 34445678888775543   234456666666666555 6788999999   45  666776


Q ss_pred             HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhh-hHHhhhhhhhHHHHHHHHH
Q 013568          207 LSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSL-QSLCWGSSAFGGIVSSYFS  285 (440)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~~~g~~ig~~i~  285 (440)
                      .+.++.+++.+.++ +.++.+.+++..++.+++.+...+....++.|.+|++.|+++.++ ++....   +|.+++|.++
T Consensus       294 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~---lg~~~gp~l~  369 (417)
T 2cfq_A          294 LAGTIMSVRIIGSS-FATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQ---LAMIFMSVLA  369 (417)
T ss_dssp             HHHHHHHHHHHHHT-TCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHH---HHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh---HHHHHhhhhH
Confidence            77666666655555 455666666666777777776666778899999999999887776 355555   9999999999


Q ss_pred             HHhhhccchHHHHHHHHHHHHHHHHh-heeeccccc
Q 013568          286 GSMVDAYGVRFVFGVTALLPLITSGV-AVLVKEQQV  320 (440)
Q Consensus       286 g~l~~~~gw~~~f~i~~~~~~~~~~~-~~~~~e~~~  320 (440)
                      |++.+..|+...|.+.+++.+++.+. .++.+|+++
T Consensus       370 G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          370 GNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            99999889999999988887777664 444555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.34  E-value=1.8e-11  Score=120.31  Aligned_cols=170  Identities=12%  Similarity=0.003  Sum_probs=126.5

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHH-HHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFY-LKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~-l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      ++.++...+..++.... .....+++.| +++.+|.+..+.+++.++..++..+ .++.|+++||+   |  ||+.+..+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~---~--~~~~~~~~  331 (438)
T 3o7q_A          257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF---A--PHKVLAAY  331 (438)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---C--HHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh---c--chHHHHHH
Confidence            44566555555555444 5666788999 8887899999999999888888777 78889999994   4  67777777


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568          209 GLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM  288 (440)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l  288 (440)
                      .++..++.+++. ..++... +++.++.|++.+...+...++..|..|++ ++.+.++.. ...   +|..++|.+.|++
T Consensus       332 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~---~g~~~~~~~~g~l  404 (438)
T 3o7q_A          332 ALIAMALCLISA-FAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTI---IGGGIVTPVMGFV  404 (438)
T ss_dssp             HHHHHHHHHHHH-HCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTT---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHH---HHHHHHHHHHHHH
Confidence            777766666555 4455444 34447888888888888999989998876 666666554 333   8999999999999


Q ss_pred             hhccc-hHHHHHHHHHHHHHHHHhhe
Q 013568          289 VDAYG-VRFVFGVTALLPLITSGVAV  313 (440)
Q Consensus       289 ~~~~g-w~~~f~i~~~~~~~~~~~~~  313 (440)
                      .+..| ++..|++.+++.++.++..+
T Consensus       405 ~~~~g~~~~~~~~~~~~~~~~~~~~~  430 (438)
T 3o7q_A          405 SDAAGNIPTAELIPALCFAVIFIFAR  430 (438)
T ss_dssp             HHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            99999 99999887666555444333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.04  E-value=1.7e-09  Score=107.95  Aligned_cols=174  Identities=14%  Similarity=0.065  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhh----hHHH
Q 013568          136 FAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYL----VLSG  209 (440)
Q Consensus       136 ~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l----~~~~  209 (440)
                      +.+.+..+..... ......++.+.++.++.+....+++.+...+...+ .++.|+++||+   | ||+...    ..+.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~---~-~r~~~~~~~~~~~~  361 (491)
T 4aps_A          286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW---K-KNQPSSPTKFAVGL  361 (491)
T ss_dssp             HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT---T-TC---CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH---h-ccCCCchHHHHHHH
Confidence            3333333333333 45556778888887788767777776666666666 78889999994   5 443222    1454


Q ss_pred             HHHHHHHHHHHhhh--------chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHH
Q 013568          210 LLGALSWSLMATIV--------ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVS  281 (440)
Q Consensus       210 ~~~~~~~~~~~~~~--------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig  281 (440)
                      ++..++.+++....        .+....++..++.|++.+...+....++.|..|++.|+.+.++.+....   +|..++
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~---~g~~i~  438 (491)
T 4aps_A          362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS---VGSALN  438 (491)
T ss_dssp             HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH---HHHHHH
Confidence            55555544443111        2555667778889999998888999999999999999999999888777   999999


Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHHHhhe-eecc
Q 013568          282 SYFSGSMVDAYGVRFVFGVTALLPLITSGVAV-LVKE  317 (440)
Q Consensus       282 ~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~-~~~e  317 (440)
                      +.+.+++.+ .++.+.|++.+++.++..+..+ +.++
T Consensus       439 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          439 AQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             HHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988765 4677788887777766655433 4343

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.90  E-value=1.9e-08  Score=100.32  Aligned_cols=163  Identities=14%  Similarity=0.053  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhh---ch
Q 013568          150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIV---ES  225 (440)
Q Consensus       150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~---~~  225 (440)
                      ....+.+.+.++ .+.+.........+..+...+ .++.+++.||   +|  ||+.++.+.....++.+.++...   .+
T Consensus       295 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr---~G--rr~~~~~~~~~~~~~~~~l~~~~~~~~~  368 (491)
T 4gc0_A          295 VVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDK---FG--RKPLQIIGALGMAIGMFSLGTAFYTQAP  368 (491)
T ss_dssp             HHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HC--SHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHh---hc--CcchhccchHHHHHHHHHHHHHHhcccc
Confidence            334344444444 688877776665555565555 6788999999   45  77777776666666555443221   11


Q ss_pred             hHHHHHHHHHHHHHHH-hhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh------ccchHHHH
Q 013568          226 KYSAALSILLGSLSVA-FSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD------AYGVRFVF  298 (440)
Q Consensus       226 ~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~------~~gw~~~f  298 (440)
                      ....++..++...+.+ ...+..+.+.+|++|.+.|+++.++......   +|.++++.+.+.+.+      ..++.+.|
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~---~~~~i~~~~~p~l~~~~~~~~~~~~~~~~  445 (491)
T 4gc0_A          369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQW---LANYFVSWTFPMMDKNSWLVAHFHNGFSY  445 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHH---HHHHHHHTHHHHHCHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            2222222222222222 2345677899999999999998888776666   888888877766543      34567788


Q ss_pred             HHHHHHHHHHHH-hheeecccccc
Q 013568          299 GVTALLPLITSG-VAVLVKEQQVL  321 (440)
Q Consensus       299 ~i~~~~~~~~~~-~~~~~~e~~~~  321 (440)
                      ++.++++++..+ .++++||++..
T Consensus       446 ~i~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          446 WIYGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             HHHHHHHHHHHHHHHheecCCCCC
Confidence            888888777766 56789998754

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.84  E-value=1.1e-09  Score=105.41  Aligned_cols=160  Identities=9%  Similarity=-0.062  Sum_probs=115.1

Q ss_pred             ccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568          133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL  210 (440)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~  210 (440)
                      ++++...+..+..... .....++|.++++.+|.+..+.+++.+...++..+ .++.+++.||+   |  +  .+..+..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~---~--~--~~~~~~~  271 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF---S--T--LMWQSVI  271 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH---H--H--HHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--H--HHHHHHH
Confidence            3455555555555554 56667788888887899999999998888888777 77889999983   3  3  2333322


Q ss_pred             H-HHHHHH--HHHhh-hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHH
Q 013568          211 L-GALSWS--LMATI-VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG  286 (440)
Q Consensus       211 ~-~~~~~~--~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g  286 (440)
                      . ...+..  ..... .++.+.+.+..++.|++.+...+....++.|..| ++|+++.++.+....   +|..++|.+.|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~---~g~~~~~~~~g  347 (375)
T 2gfp_A          272 CCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQN---IGSGVLASLSA  347 (375)
T ss_dssp             HHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHH---HHHHCCSTTCT
T ss_pred             HHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHH---HHHHHHHHHHH
Confidence            2 222211  11111 2355556677788899999989999999999998 789988888887766   99999999999


Q ss_pred             HhhhccchHHHHHHHHH
Q 013568          287 SMVDAYGVRFVFGVTAL  303 (440)
Q Consensus       287 ~l~~~~gw~~~f~i~~~  303 (440)
                      .+.+..+|...+++.++
T Consensus       348 ~l~~~~~~~~~~~~~~~  364 (375)
T 2gfp_A          348 MLPQTGQGSLGLLMTLM  364 (375)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCcccHHHHHHHH
Confidence            99888788888776543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.37  E-value=2.3e-06  Score=85.88  Aligned_cols=141  Identities=16%  Similarity=0.146  Sum_probs=91.4

Q ss_pred             hhHHHHHhhhhhHHH-Hhhhhhhc-cccCcCCCCc---chhhhHHHHHHHHHHHHHHhhh--------chhHHHHHHHHH
Q 013568          169 ETAVISGFSSLPWLI-KPLYGFIS-DSLPLFGYRR---RSYLVLSGLLGALSWSLMATIV--------ESKYSAALSILL  235 (440)
Q Consensus       169 ~~g~~~s~~~l~~~~-~~~~g~l~-Dr~~~~G~~r---r~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l  235 (440)
                      ..+++.....++..+ .++.+.+. ++..+.| +|   +..+.++.++.+++.++++...        .+.+.+++..++
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  414 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMG-VKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYAL  414 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Confidence            355555555555444 55666553 2211122 11   2344556566666655554221        255566777889


Q ss_pred             HHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhcc--ch---------HHHHHHHHHH
Q 013568          236 GSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY--GV---------RFVFGVTALL  304 (440)
Q Consensus       236 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~--gw---------~~~f~i~~~~  304 (440)
                      .|++.+...+....++.|..|++.|++++++.+....   +|.++||.+.|.+.+..  +|         +..|++.+++
T Consensus       415 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~---~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (524)
T 2xut_A          415 LTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVT---VGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGF  491 (524)
T ss_dssp             HHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHH---HHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHH---HHHHHHHHHHHHhcccccccccccccccccccHHHHHHHH
Confidence            9999999999999999999999999999999988877   99999999999987642  23         3347777766


Q ss_pred             HHHHHHhhe
Q 013568          305 PLITSGVAV  313 (440)
Q Consensus       305 ~~~~~~~~~  313 (440)
                      .++..++.+
T Consensus       492 ~~~~~~~~~  500 (524)
T 2xut_A          492 AILAAIVFA  500 (524)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            666655444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	440
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.9
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.76
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.38
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.25

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.4e-23  Score=205.03  Aligned_cols=276  Identities=10%  Similarity=-0.035  Sum_probs=194.0

Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHH
Q 013568          138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS  215 (440)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~  215 (440)
                      +++.++..++. ..+. .+.++++| +|+|.++.|++.+++.+++.+ ++++|+++||   +|  ||+.+..+.++..++
T Consensus        30 ~~~~~~~~~~~~~~~~-~~~p~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr---~g--~r~~~~~~~~~~~~~  102 (447)
T d1pw4a_          30 IFFGYAAYYLVRKNFA-LAMPYLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDR---SN--PRVFLPAGLILAAAV  102 (447)
T ss_dssp             HHHHHHHHHHHHTSHH-HHHHHTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH---SC--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--chHHHHHHHHHHHHH
Confidence            34444444444 2333 44456666 799999999999999999988 8899999999   45  888888888888777


Q ss_pred             HHHHHhh---hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhc-
Q 013568          216 WSLMATI---VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA-  291 (440)
Q Consensus       216 ~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~-  291 (440)
                      .++++..   ..+...++++|++.|++.+...+...+++.|++|+++|+++.++.+.+..   +|.++++.+++.+... 
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~---~g~~i~~~~~~~~~~~~  179 (447)
T d1pw4a_         103 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHN---VGGGIPPLLFLLGMAWF  179 (447)
T ss_dssp             HHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHH---HHHTSHHHHHHHHHHHT
T ss_pred             HhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccc---hhhhhhhhhhhhHhhhh
Confidence            7666522   24667889999999999999999999999999999999999999888887   9999999998887664 


Q ss_pred             cchHHHHHHHHHHHHHHHHh-heeeccccccCCCcCCCCCCCC------CccchhhHHHHHHHHHHhcCcchhhhHHHHH
Q 013568          292 YGVRFVFGVTALLPLITSGV-AVLVKEQQVLGPSRRQNLPLGD------PSFFESSKQNMFQLWEAVKQPNVFLPTLFVF  364 (440)
Q Consensus       292 ~gw~~~f~i~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  364 (440)
                      .+|++.|++.+++.++..++ +++.++++........++...+      +...+.........+..++++.++......+
T Consensus       180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (447)
T d1pw4a_         180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV  259 (447)
T ss_dssp             CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHH
T ss_pred             hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhh
Confidence            47999999988877766554 4455555443222111111000      0000000111122445667887777665555


Q ss_pred             hhhcccc-ccceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHH
Q 013568          365 LWQATPH-SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFL  423 (440)
Q Consensus       365 ~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~  423 (440)
                      +...... .......+..+.+|++..+.+.......++.+++.++.+++.||+++++...
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  319 (447)
T d1pw4a_         260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA  319 (447)
T ss_dssp             HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred             hhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccc
Confidence            4333211 1222234445678999999999999999999999999999999998765433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.7e-18  Score=165.49  Aligned_cols=288  Identities=14%  Similarity=0.105  Sum_probs=170.0

Q ss_pred             CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568          131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS  208 (440)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~  208 (440)
                      .++.+|.+.+.+|...+. +...+.++.|++|++|+|.+++|++.++..+++.+ +|++|+++||   +|  ||+.++++
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr---~g--rr~~l~~~   79 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK---LG--LRKYLLWI   79 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH---HT--TCTHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--chHHHHHH
Confidence            345788888888887776 67777889999988999999999999999999988 8999999999   45  67777777


Q ss_pred             HHHHHHHHHHHHhhhchhHHH----HHHHHHHHHHHHhhhhhhhHHHHhhhccc--ccccchhhhHHhhhhhhhHHHHHH
Q 013568          209 GLLGALSWSLMATIVESKYSA----ALSILLGSLSVAFSDVVVDSMVVERARGE--SQSVSGSLQSLCWGSSAFGGIVSS  282 (440)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~~~~g~~ig~  282 (440)
                      ..+..++..++. ...+....    ++.+.+.+.+.+...........+..+++  ++....+.......   .+..+++
T Consensus        80 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  155 (417)
T d1pv7a_          80 ITGMLVMFAPFF-IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGC---VGWALGA  155 (417)
T ss_dssp             HHHHHHTHHHHH-HHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHH---HHHHHHH
T ss_pred             HHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhc---ccccccc
Confidence            666666655555 33333332    23333333333333333333333333322  23334444444445   8889999


Q ss_pred             HHHHHhhhccchHHHHHHHHHHHH-HHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHH
Q 013568          283 YFSGSMVDAYGVRFVFGVTALLPL-ITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTL  361 (440)
Q Consensus       283 ~i~g~l~~~~gw~~~f~i~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l  361 (440)
                      .+++.+.+. +|++.+........ +..+..++.+|++...+.++++.....       +.......+..+++..+....
T Consensus       156 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  227 (417)
T d1pv7a_         156 SIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHS-------AFSLKLALELFRQPKLWFLSL  227 (417)
T ss_dssp             HHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCC-------CCCHHHHHHHTTSSHHHHHHH
T ss_pred             ccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcc-------cccccccccccccccccchhh
Confidence            999988765 45555555444444 444455666665543322211110000       011122333444444333322


Q ss_pred             HHHhhhcccc-cccee---eeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHhhh
Q 013568          362 FVFLWQATPH-SDSAM---FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMT  435 (440)
Q Consensus       362 ~~~~~~~~~~-~~~~~---~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~~~~~  435 (440)
                      ..+....... .....   .....+..+.+....+.......++..++..+.+++.||.++++.+..+.++.++..+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~  305 (417)
T d1pv7a_         228 YVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG  305 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhc
Confidence            2222111000 01111   11111233445556677778888899999999999999999999998887777665543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=9.9e-13  Score=126.98  Aligned_cols=174  Identities=13%  Similarity=0.027  Sum_probs=122.8

Q ss_pred             CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH-
Q 013568          132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS-  208 (440)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~-  208 (440)
                      ++.++.+....++.... .....+.+.++.+.++.+..+.++..++..+...+ .++.|+++||+   + +++...... 
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~-~~~~~~~~~~  323 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV---F-RGNRGATGVF  323 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---S-TTCHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc---c-ccccccccch
Confidence            44566666555555554 56677889999888899999999998888888777 67889999994   3 232222221 


Q ss_pred             -HHHHHHHHHHHHh-hhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhh-HHHHHHHHH
Q 013568          209 -GLLGALSWSLMAT-IVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAF-GGIVSSYFS  285 (440)
Q Consensus       209 -~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-g~~ig~~i~  285 (440)
                       ..+..++...... ...+.+...++.++.|++.+...+....+..|.+|++.|+++.++.+....   + |.+++|.+.
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~---~~g~~~~~~~~  400 (447)
T d1pw4a_         324 FMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY---LGGSVAASAIV  400 (447)
T ss_dssp             HHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence             1111122111110 123455666777888888888888889999999999999988887765444   5 567789999


Q ss_pred             HHhhhccchHHHHHHHHHHHHHHHHhh
Q 013568          286 GSMVDAYGVRFVFGVTALLPLITSGVA  312 (440)
Q Consensus       286 g~l~~~~gw~~~f~i~~~~~~~~~~~~  312 (440)
                      |++.+.+||+..|++.+++.++..++.
T Consensus       401 g~~~~~~g~~~~~~~~~~~~~~~~~~~  427 (447)
T d1pw4a_         401 GYTVDFFGWDGGFMVMIGGSILAVILL  427 (447)
T ss_dssp             HHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            999999999999998887776665533

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=2.2e-12  Score=122.19  Aligned_cols=144  Identities=13%  Similarity=0.085  Sum_probs=113.2

Q ss_pred             ChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhh
Q 013568          166 DPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSD  244 (440)
Q Consensus       166 s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  244 (440)
                      +....+...+...++..+ ..+.+++.||+   |  +|+.+.++.++..++.+.+. ..++.+.+++..++.|++.+...
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~---~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~  330 (417)
T d1pv7a_         257 GTRVFGYVTTMGELLNASIMFFAPLIINRI---G--GKNALLLAGTIMSVRIIGSS-FATSALEVVILKTLHMFEVPFLL  330 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHH---C--HHHHHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhcccccccccccccchhhhhhhhccc---c--cccchhhhHHHHHHhhhccc-cccccchhhHHHHHHHHHHHHHH
Confidence            334455555555555555 66889999993   4  77778888777777777777 67788888888899999999999


Q ss_pred             hhhhHHHHhhhcccccccchhhh-HHhhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhh-eeeccc
Q 013568          245 VVVDSMVVERARGESQSVSGSLQ-SLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVA-VLVKEQ  318 (440)
Q Consensus       245 ~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~~~~g~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~-~~~~e~  318 (440)
                      +...+++.|.+|++.|++..++. +....   +|..++|.++|++.+.+||++.|++.+++.++..++. ++++++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         331 VGCFKYITSQFEVRFSATIYLVCFCFFKQ---LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHSCGGGHHHHHHHHHTTTHH---HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHCCHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999887764 44555   8999999999999999999999999988877766644 444433