Citrus Sinensis ID: 013569

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
MEMPQYDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSSLGDTELKNQVKIEEGAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLPPLASYLDVFGDLVKLKGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMGSAHEMNSSSCPTGSLNSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATEEPPAKRKRIAPLSDGGSTLIKQVAHISTMVGPHVTAAAAEAAVAALCNESSCPREIFDGDEDYLANGLSSPTMVSDPERLIIL
cccccccccccccccEEEccccccccccccccHHHHHHcHHHcccccccccHHHHHHHHHHHHHHHHHcccccEEHHHHHHHccccHHHHHHHHHHHcccccEEccccccccccccccccccccccccccEEccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccHHHccccccccccccccccccc
cccccHHHccHHcccEEEEcccccHcccccHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHHHccccHHEEEHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccHHHHHccccccccccccccccccccccEEEEccccccccccHHHHHcccccccccccHEEEEccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHcccccccHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHcccccccccccccccccccccccEEEEc
mempqydpntkpefelytipshsswfrwddIHETERTALKeffdgssisrtpKIYKEYRDFMINKyreepsrrltFTQVRKSLVGDVSLLHKVFRLLDewglinfgavsrgddsdnrdsslgdtelknqvkieegapngvrvvalpnslkpisvpnsgadgsgngkvavagetgvklpplasyLDVFGDLVklkgfkcgscgeqcnsgcyeyskgsfvICEKcfkngnygedkskddfrfsdlggnslthgatwTEAETLLLLESVMRHgdnwelvaqnvptkskLDCISKLielpfgefmmgsahemnssscptgslnslkegqsassenqndvkmEDQVHDQMneskqngdaateeppakrkriaplsdggsTLIKQVAHISTMVGPHVTAAAAEAAVAALCnesscpreifdgdedylanglssptmvsdperliil
mempqydpntkpeFELYTIPSHSSWFRWDDIHETERTAlkeffdgssisrtpkiYKEYRDFMINKyreepsrrltftqVRKSLVGDVSLLHKVFRLLDEWGLINfgavsrgddsdnrdsslgdtelknqvkieegapngvRVVALPNSLKPisvpnsgadgsgNGKVAVAGETGVKLPPLASYLDVFGDLVKLKGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLLLESVMRHGDNWELVAqnvptksklDCISKLIELPFGEFMMGSAHEMNSSSCPTGSLNSLKEGQSASSENQNDVKMEDQVHDQMNESkqngdaateeppakrkriaplsdggSTLIKQVAHISTMVGPHVTAAAAEAAVAALCNESSCPREIFDGDEDYLAnglssptmvsdperliil
MEMPQYDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVsrgddsdnrdsslgdTELKNQVKIEEGAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLPPLASYLDVFGDLVKLKGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGatwteaetlllleSVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMGSAHEMNSSSCPTGSLNSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATEEPPAKRKRIAPLSDGGSTLIKQVAHISTMVGPHVTaaaaeaavaaLCNESSCPREIFDGDEDYLANGLSSPTMVSDPERLIIL
*************FELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV**********************************************************VAVAGETGVKLPPLASYLDVFGDLVKLKGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGED***DDFRFSDLGGNSLTHGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMM************************************************************************TLIKQVAHISTMVGPHVTAAAAEAAVAALCNESSCPREIFDGDEDYL*******************
****************YTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDD************LKNQVKIEEGAPNGVRVV***********************************************VKLKGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKN***************************WTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFM*****************************************************************************QVAHISTMVG*************************************************I**
*********TKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRG**********GDTELKNQVKIEEGAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLPPLASYLDVFGDLVKLKGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMGSAH*****************************KMEDQV********************KRKRIAPLSDGGSTLIKQVAHISTMVGPHVTAAAAEAAVAALCNESSCPREIFDGDEDYLANGLSSPTMVSDPERLIIL
*****YDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSSL*D*ELKNQVKIEEGAPNGVRV***************************************************KGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGG***THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMGS************************************************************RIAPLSDGGSTLIKQVAHISTMVGPHVTAAAAEAAVAALCN***********************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEMPQYDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSSLGDTELKNQVKIEEGAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLPPLASYLDVFGDLVKLKGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMGSAHEMNSSSCPTGSLNSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATEEPPAKRKRIAPLSDGGSTLIKQVAHISTMVGPHVTAAAAEAAVAALCNESSCPREIFDGDEDYLANGLSSPTMVSDPERLIIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query440 2.2.26 [Sep-21-2011]
Q8W475 512 SWI/SNF complex subunit S yes no 0.854 0.734 0.535 1e-106
Q84JG2469 SWI/SNF complex subunit S no no 0.679 0.637 0.270 3e-39
Q9XI07 807 SWI/SNF complex subunit S no no 0.827 0.451 0.272 3e-31
O14470503 SWI/SNF and RSC complexes yes no 0.690 0.604 0.297 6e-31
P43609557 Chromatin structure-remod yes no 0.595 0.470 0.311 1e-30
O13788527 SWI/SNF and RSC complexes no no 0.636 0.531 0.300 7e-30
Q8VY05 985 SWI/SNF complex subunit S no no 0.588 0.262 0.283 2e-21
Q6PDG5 1213 SWI/SNF complex subunit S yes no 0.225 0.081 0.432 3e-21
Q8TAQ2 1214 SWI/SNF complex subunit S yes no 0.225 0.081 0.432 3e-21
P32591 825 SWI/SNF complex subunit S no no 0.552 0.294 0.278 3e-20
>sp|Q8W475|SWI3A_ARATH SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1 Back     alignment and function desciption
 Score =  385 bits (989), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 227/424 (53%), Positives = 282/424 (66%), Gaps = 48/424 (11%)

Query: 3   MPQYDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFM 62
           M   DP+   E ELYTIP+ SSWF WDDIHE ER    EFF  SSI+RTPK+YKEYRDF+
Sbjct: 1   MEATDPSA--EIELYTIPAQSSWFLWDDIHEIERREFAEFFTESSITRTPKVYKEYRDFI 58

Query: 63  INKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDS----DNRD 118
           INK+RE+  RRLTFT VRK LVGDV+LL KVF  L++WGLINF +  + +D     DN  
Sbjct: 59  INKFREDTCRRLTFTSVRKFLVGDVNLLQKVFLFLEKWGLINFSSSLKKNDHLLSVDN-- 116

Query: 119 SSLGDTELKNQVKIEEGAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLP 178
                       KIE+G P G+RV A PNSL+PI+ P           V    ETG+K+P
Sbjct: 117 -----------AKIEQGTPAGIRVTATPNSLRPITAP---------PLVEERVETGIKVP 156

Query: 179 PLASYLDVFGDLVKLKG-FKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDD 237
           PL SY DVF DL K      C  CGE+C+S  Y+++KG   ICEKCFKNGNYGE+ + DD
Sbjct: 157 PLTSYSDVFSDLKKPDHVLVCAHCGERCDSPFYQHNKGIVNICEKCFKNGNYGENNTADD 216

Query: 238 FRFSDLGGNSLTHGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPF 297
           F+   L GNS    A WTE E LLLLESV++HGD+WEL++Q+V TKS+LDCISKLIELPF
Sbjct: 217 FK---LIGNS--AAAVWTEEEILLLLESVLKHGDDWELISQSVSTKSRLDCISKLIELPF 271

Query: 298 GEFMMGSAHEMNSSSCPTGSLNSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATE 357
           GEF+MGSA         +G LN          EN   V+ + Q H++    ++  D   E
Sbjct: 272 GEFLMGSA---------SGRLNP---SILTEDENTEQVQTDGQEHEETETREEKEDRVNE 319

Query: 358 -EPPAKRKRIAPLSDGGSTLIKQVAHISTMVGPHVTAAAAEAAVAALCNESSCPREIFDG 416
            EPPAKRKR+A +S+G S+L+KQVA +++ VGP V  AAA+AA+AALC+E+SCP+EIFD 
Sbjct: 320 DEPPAKRKRVALISEGDSSLMKQVAAMASKVGPSVATAAAKAALAALCDEASCPKEIFDT 379

Query: 417 DEDY 420
           D DY
Sbjct: 380 D-DY 382
Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1 SV=1 Back     alignment and function description
>sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1 Back     alignment and function description
>sp|O14470|SSR2_SCHPO SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3 Back     alignment and function description
>sp|P43609|RSC8_YEAST Chromatin structure-remodeling complex protein RSC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSC8 PE=1 SV=1 Back     alignment and function description
>sp|O13788|SSR1_SCHPO SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr1 PE=1 SV=1 Back     alignment and function description
>sp|Q8VY05|SWI3D_ARATH SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3 Back     alignment and function description
>sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2 Back     alignment and function description
>sp|Q8TAQ2|SMRC2_HUMAN SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1 Back     alignment and function description
>sp|P32591|SWI3_YEAST SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query440
225456390 563 PREDICTED: SWI/SNF complex subunit SWI3A 0.954 0.746 0.595 1e-137
147858898 563 hypothetical protein VITISV_043833 [Viti 0.954 0.746 0.595 1e-137
224136238 570 chromatin remodeling complex subunit [Po 0.956 0.738 0.591 1e-136
255540147 547 DNA binding protein, putative [Ricinus c 0.95 0.764 0.580 1e-134
356509348527 PREDICTED: SWI/SNF complex subunit SWI3A 0.913 0.762 0.574 1e-130
357465011540 SWI/SNF complex subunit SMARCC2 [Medicag 0.922 0.751 0.583 1e-129
356518589522 PREDICTED: SWI/SNF complex subunit SWI3A 0.920 0.775 0.582 1e-127
449523928 566 PREDICTED: SWI/SNF complex subunit SWI3A 0.913 0.710 0.549 1e-119
449440963 566 PREDICTED: SWI/SNF complex subunit SWI3A 0.913 0.710 0.549 1e-119
30690734512 SWI/SNF complex subunit SWI3A [Arabidops 0.854 0.734 0.535 1e-104
>gi|225456390|ref|XP_002280389.1| PREDICTED: SWI/SNF complex subunit SWI3A [Vitis vinifera] gi|297734457|emb|CBI15704.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 262/440 (59%), Positives = 331/440 (75%), Gaps = 20/440 (4%)

Query: 7   DPNTK------PEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRD 60
           DP++K      PE +LYTIP HSSWF WD+IHE E+ +LKEFFDGSSISRTPKIYKEYRD
Sbjct: 6   DPSSKLTRHDEPELDLYTIPIHSSWFSWDEIHEKEKISLKEFFDGSSISRTPKIYKEYRD 65

Query: 61  FMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSS 120
           F+I+KYRE+PSRRLTF ++RKSLVGDVSLLHKVF  L+ WGLINFGA   G+DS    ++
Sbjct: 66  FIISKYREDPSRRLTFAEIRKSLVGDVSLLHKVFLFLERWGLINFGAPG-GEDS----AA 120

Query: 121 LGDTELKNQVKIEEGAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLPPL 180
           + +   +++V+ E+GAPNG+RVVA+PNSLKPI++P +      NG+V    E G +LPPL
Sbjct: 121 VAEGAERHRVRSEDGAPNGIRVVAMPNSLKPITMPLTL---DVNGEV---DENGFRLPPL 174

Query: 181 ASYLDVFGDLVKLKGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRF 240
           ASY DVF DL K KG  CG+CG+ C+SG Y   KGS VIC KCFKNGNYGE++S DDF+F
Sbjct: 175 ASYSDVFSDLTKEKGLVCGNCGDNCDSGHYNCLKGSPVICVKCFKNGNYGENRSVDDFKF 234

Query: 241 SDLGGNSLTHGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEF 300
           +D   N    GA WTEAETLLLLESV++HGD+WELV QNV TK+KLDCISKLIELPFGE 
Sbjct: 235 NDCNENRGNRGAVWTEAETLLLLESVLKHGDDWELVVQNVQTKTKLDCISKLIELPFGEL 294

Query: 301 MMGSAHEMNSSSCPTGSLNSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATEEPP 360
           M+GS+  +  S     + +S+K  Q+ S E+Q ++K   Q  +Q+NES+QNGDA  + PP
Sbjct: 295 MLGSS--LGKSRASNDNTSSIKPVQT-SLESQENIKNGGQGDEQINESEQNGDAENQGPP 351

Query: 361 AKRKRIAPLSDGGSTLIKQVAHISTMVGPHVTAAAAEAAVAALCNESSCPREIFDGDEDY 420
            KRK I  LSD G +L++QVA ISTMVGPH++AAAA+AAVAALC+E+ C ++IFDG ED 
Sbjct: 352 LKRKCITSLSDAGISLMRQVAVISTMVGPHISAAAADAAVAALCDENPCVKDIFDGAEDN 411

Query: 421 LANGLSSPTMVSDPERLIIL 440
           +   L SP   +  ER +++
Sbjct: 412 VTEELGSPIRNNKLERSLMV 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147858898|emb|CAN80839.1| hypothetical protein VITISV_043833 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224136238|ref|XP_002322279.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222869275|gb|EEF06406.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255540147|ref|XP_002511138.1| DNA binding protein, putative [Ricinus communis] gi|223550253|gb|EEF51740.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356509348|ref|XP_003523412.1| PREDICTED: SWI/SNF complex subunit SWI3A-like [Glycine max] Back     alignment and taxonomy information
>gi|357465011|ref|XP_003602787.1| SWI/SNF complex subunit SMARCC2 [Medicago truncatula] gi|355491835|gb|AES73038.1| SWI/SNF complex subunit SMARCC2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356518589|ref|XP_003527961.1| PREDICTED: SWI/SNF complex subunit SWI3A-like [Glycine max] Back     alignment and taxonomy information
>gi|449523928|ref|XP_004168975.1| PREDICTED: SWI/SNF complex subunit SWI3A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449440963|ref|XP_004138253.1| PREDICTED: SWI/SNF complex subunit SWI3A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30690734|ref|NP_850476.1| SWI/SNF complex subunit SWI3A [Arabidopsis thaliana] gi|75331380|sp|Q8W475.1|SWI3A_ARATH RecName: Full=SWI/SNF complex subunit SWI3A; Short=AtSWI3A; AltName: Full=Transcription regulatory protein SWI3A gi|17065436|gb|AAL32872.1| putative SWI/SNF family transcription activator [Arabidopsis thaliana] gi|20148483|gb|AAM10132.1| putative SWI/SNF family transcription activator [Arabidopsis thaliana] gi|330255771|gb|AEC10865.1| SWI/SNF complex subunit SWI3A [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query440
TAIR|locus:2043263 512 SWI3A "SWITCH/sucrose nonferme 0.604 0.519 0.464 5.8e-103
TAIR|locus:2051028469 SWI3B "switch subunit 3" [Arab 0.227 0.213 0.43 3.3e-34
POMBASE|SPAC23H3.10503 ssr2 "SWI/SNF and RSC complex 0.197 0.172 0.517 1.6e-26
DICTYBASE|DDB_G0277033 1223 swi3 "SWIRM domain-containing 0.231 0.083 0.480 2.2e-25
POMBASE|SPAC17G6.10527 ssr1 "SWI/SNF and RSC complex 0.197 0.165 0.471 2.9e-23
ASPGD|ASPL0000005061 681 AN6705 [Emericella nidulans (t 0.197 0.127 0.505 7.5e-23
SGD|S000001933557 RSC8 "Component of the RSC chr 0.768 0.606 0.254 1.8e-22
CGD|CAL0002007 971 orf19.4488 [Candida albicans ( 0.231 0.105 0.476 4e-20
ZFIN|ZDB-GENE-080514-3 1089 smarcc1a "SWI/SNF related, mat 0.197 0.079 0.494 9.5e-19
MGI|MGI:1203524 1104 Smarcc1 "SWI/SNF related, matr 0.197 0.078 0.494 9.7e-19
TAIR|locus:2043263 SWI3A "SWITCH/sucrose nonfermenting 3A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 618 (222.6 bits), Expect = 5.8e-103, Sum P(2) = 5.8e-103
 Identities = 137/295 (46%), Positives = 180/295 (61%)

Query:   128 NQVKIEEGAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLPPLASYLDVF 187
             +  KIE+G P G+RV A PNSL+PI+ P    +     +V    ETG+K+PPL SY DVF
Sbjct:   115 DNAKIEQGTPAGIRVTATPNSLRPITAPPLVEE-----RV----ETGIKVPPLTSYSDVF 165

Query:   188 GDLVKLKG-FKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGN 246
              DL K      C  CGE+C+S  Y+++KG   ICEKCFKNGNYGE+ + DDF+   L GN
Sbjct:   166 SDLKKPDHVLVCAHCGERCDSPFYQHNKGIVNICEKCFKNGNYGENNTADDFK---LIGN 222

Query:   247 SLTHGXXXXXXXXXXXXXSVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMGSAH 306
             S                 SV++HGD+WEL++Q+V TKS+LDCISKLIELPFGEF+MGSA 
Sbjct:   223 SAA--AVWTEEEILLLLESVLKHGDDWELISQSVSTKSRLDCISKLIELPFGEFLMGSA- 279

Query:   307 EMNSSSCPTGSLNSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATE-EPPAKRKR 365
                     +G LN          EN   V+ + Q H++    ++  D   E EPPAKRKR
Sbjct:   280 --------SGRLNP---SILTEDENTEQVQTDGQEHEETETREEKEDRVNEDEPPAKRKR 328

Query:   366 IAPLSDGGSTLIKQVAHISTMVGPHVTXXXXXXXXXXLCNESSCPREIFDGDEDY 420
             +A +S+G S+L+KQVA +++ VGP V           LC+E+SCP+EIFD D DY
Sbjct:   329 VALISEGDSSLMKQVAAMASKVGPSVATAAAKAALAALCDEASCPKEIFDTD-DY 382
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006338 "chromatin remodeling" evidence=ISS
GO:0016514 "SWI/SNF complex" evidence=ISS
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0040029 "regulation of gene expression, epigenetic" evidence=RCA
TAIR|locus:2051028 SWI3B "switch subunit 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC23H3.10 ssr2 "SWI/SNF and RSC complex subunit Ssr2" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277033 swi3 "SWIRM domain-containing protein Swi3" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPAC17G6.10 ssr1 "SWI/SNF and RSC complex subunit Ssr1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000005061 AN6705 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000001933 RSC8 "Component of the RSC chromatin remodeling complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0002007 orf19.4488 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080514-3 smarcc1a "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1203524 Smarcc1 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8W475SWI3A_ARATHNo assigned EC number0.53530.85450.7343yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CHB905
chromatin remodeling complex subunit (570 aa)
(Populus trichocarpa)
Predicted Functional Partners:
CHE901
condensin complex components subunit (244 aa)
    • • 0.544

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
COG5259531 COG5259, RSC8, RSC chromatin remodeling complex su 4e-45
pfam0443380 pfam04433, SWIRM, SWIRM domain 2e-29
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 1e-07
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 2e-07
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 6e-06
>gnl|CDD|227584 COG5259, RSC8, RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information 
 Score =  163 bits (415), Expect = 4e-45
 Identities = 88/286 (30%), Positives = 137/286 (47%), Gaps = 23/286 (8%)

Query: 19  IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
           IPS++ WF    IHE E+ +  EFF+G S S+TP++YK+YR+FMIN YR  P+  LT T 
Sbjct: 54  IPSYAEWFDGSKIHEIEKRSNPEFFNGRSPSKTPEVYKDYRNFMINSYRLNPNEYLTVTA 113

Query: 79  VRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSSLGDTELKNQVKIEEGAPN 138
            R+++ GDV+ + +V R L++WGLIN+       D   R S++G   L +  +     P 
Sbjct: 114 CRRNVAGDVAAIVRVHRFLEKWGLINYQV-----DPGTRPSTIGPP-LTSHFQDLHDTPR 167

Query: 139 GVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLPPLASYL-------DVFGDLV 191
           G+          PI+    GA            +     P L S         D   D  
Sbjct: 168 GLSPFLPWG---PINQRVLGAKEIEYETH----KEENYSPSLKSPKKESQGKVDELKDHS 220

Query: 192 KLKGFKCGSCGEQCNSGCYEYSKGS-FVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTH 250
           +     C  CG +  +  Y   +   +  C +C+  G +  + +  DF+   +       
Sbjct: 221 EKHPSSCSCCGNKSFNTRYHNLRAEKYNSCSECYDQGRFPSEFTSSDFKPVTISLLIRDK 280

Query: 251 GATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELP 296
              W+  E LLLLE +  +GD+W+ VA++V TK+K  CI   ++LP
Sbjct: 281 --NWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLP 324

Length = 531
>gnl|CDD|203011 pfam04433, SWIRM, SWIRM domain Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 440
COG5259 531 RSC8 RSC chromatin remodeling complex subunit RSC8 100.0
KOG1279 506 consensus Chromatin remodeling factor subunit and 100.0
PF0443386 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM 99.94
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 99.87
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 99.77
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.15
cd0233645 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present 99.09
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 98.94
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.89
PLN03000 881 amine oxidase 98.83
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.81
PLN02328 808 lysine-specific histone demethylase 1 homolog 98.72
PLN03212249 Transcription repressor MYB5; Provisional 98.37
PLN02529 738 lysine-specific histone demethylase 1 98.25
PLN03091 459 hypothetical protein; Provisional 98.17
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 98.17
cd0233549 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present 97.98
KOG0048238 consensus Transcription factor, Myb superfamily [T 97.92
PLN03212249 Transcription repressor MYB5; Provisional 97.91
cd0224946 ZZ Zinc finger, ZZ type. Zinc finger present in dy 97.89
smart0029144 ZnF_ZZ Zinc-binding domain, present in Dystrophin, 97.74
PLN03091 459 hypothetical protein; Provisional 97.66
cd0234148 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present 97.65
cd0234043 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre 97.58
cd0234549 ZZ_dah Zinc finger, ZZ type. Zinc finger present i 97.56
cd0233849 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre 97.46
cd0234348 ZZ_EF Zinc finger, ZZ type. Zinc finger present in 97.44
PF0056946 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc 97.43
cd0233449 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr 97.32
KOG0048238 consensus Transcription factor, Myb superfamily [T 97.14
cd0234445 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present 97.1
KOG0049 939 consensus Transcription factor, Myb superfamily [T 97.09
cd0233945 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre 96.91
cd0233741 ZZ_CBP Zinc finger, ZZ type. Zinc finger present i 96.46
PLN02976 1713 amine oxidase 96.35
cd0234243 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre 96.09
KOG0049 939 consensus Transcription factor, Myb superfamily [T 96.0
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 95.88
KOG0051607 consensus RNA polymerase I termination factor, Myb 94.68
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 93.68
KOG0051607 consensus RNA polymerase I termination factor, Myb 93.39
KOG4582278 consensus Uncharacterized conserved protein, conta 92.91
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 91.89
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 91.51
KOG4167907 consensus Predicted DNA-binding protein, contains 91.09
KOG1280 381 consensus Uncharacterized conserved protein contai 89.55
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 89.07
COG5147 512 REB1 Myb superfamily proteins, including transcrip 88.9
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 88.55
KOG4329445 consensus DNA-binding protein [General function pr 87.96
KOG4286 966 consensus Dystrophin-like protein [Cell motility; 87.33
KOG4282345 consensus Transcription factor GT-2 and related pr 86.56
KOG4468 782 consensus Polycomb-group transcriptional regulator 86.15
COG5147 512 REB1 Myb superfamily proteins, including transcrip 85.41
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information 
Probab=100.00  E-value=7.4e-85  Score=662.06  Aligned_cols=325  Identities=27%  Similarity=0.533  Sum_probs=268.5

Q ss_pred             CCCceeEecCCCCCCCCCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHH
Q 013569           11 KPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLL   90 (440)
Q Consensus        11 ~~~~~~ivIPsy~~WF~~~~ih~iEk~~lpefF~g~~~~ktp~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i   90 (440)
                      -+|.++|+||||+.||++.+||+||+++.||||+|++++|||++|+.||||||++||+||.+|||+|+|||||+||||+|
T Consensus        46 ~~Q~~piiiPs~a~WFd~SKiHeIE~~snPeFF~~rs~~KTP~vYk~YR~FminsyRL~p~eYLtvTa~RRNvagDV~ai  125 (531)
T COG5259          46 MEQTHPIIIPSYAEWFDGSKIHEIEKRSNPEFFNGRSPSKTPEVYKDYRNFMINSYRLNPNEYLTVTACRRNVAGDVAAI  125 (531)
T ss_pred             hccCCceeccchhhhccccccccccccCCchhhcCCCCCCCHHHHHHHHhhccceeecCCcceEEeeeehhccchhHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhccccccCCCCCCCCCCCCCCCCCccccccceeecCCCCCcccccCCCCCCCCcCCCCCCCCCCCCccccc
Q 013569           91 HKVFRLLDEWGLINFGAVSRGDDSDNRDSSLGDTELKNQVKIEEGAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVA  170 (440)
Q Consensus        91 ~Rih~FLe~wGlINy~~~~~~~~~~~~~~~lg~p~~tg~f~v~~dtP~Gl~~~~~p~~~k~~~~~~~~~~~s~~~~~~~~  170 (440)
                      .|||+|||+|||||||+++.     ++|+.+||| +||||++++|||+||+|+.+++.........++..      ....
T Consensus       126 vrvHrFLekWGLINYqvdp~-----trPs~IgPp-lt~h~q~l~dtP~gl~p~l~~~~~~~~~~~a~~~e------~~~~  193 (531)
T COG5259         126 VRVHRFLEKWGLINYQVDPG-----TRPSTIGPP-LTSHFQDLHDTPRGLSPFLPWGPINQRVLGAKEIE------YETH  193 (531)
T ss_pred             HHHHHHHHHhcceeeccCCC-----CCccccCCC-cchhhHHHhhCccccccccCCCCccccccccchhh------hhhh
Confidence            99999999999999999994     777778875 78999999999999999976544322111111100      0000


Q ss_pred             CCCCCCCCCcccch----hhccccc---ccCCccCCCCCCCCCCceeEecC-CCcccchhhhhcCCCCCCCCCCCceecc
Q 013569          171 GETGVKLPPLASYL----DVFGDLV---KLKGFKCGSCGEQCNSGCYEYSK-GSFVICEKCFKNGNYGEDKSKDDFRFSD  242 (440)
Q Consensus       171 ~~~~~~~~~l~~~~----~~~~~~~---~~~~~~C~~Cg~dc~~~~y~~~k-~~~~LC~~CF~~G~~~~~~s~~df~~i~  242 (440)
                      .+..+ .|++....    ..+.++.   ......|..||+.|..+||+..+ ..+.+|..||.+|+||+...+.||++++
T Consensus       194 k~~~~-sps~~~~~k~s~~k~~el~~~~~~~~~~C~~cG~~~~~t~y~nlra~~~n~C~~C~~qg~f~s~~~ssDf~~v~  272 (531)
T COG5259         194 KEENY-SPSLKSPKKESQGKVDELKDHSEKHPSSCSCCGNKSFNTRYHNLRAEKYNSCSECYDQGRFPSEFTSSDFKPVT  272 (531)
T ss_pred             ccCCC-CchhhhhhhhcCCCccccccccccCCceeeccCccccchhhhhhhhhhcccchHHHhcCcCCCccccccchhhh
Confidence            11111 11221110    0112222   22348999999999999999998 8899999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHcCCcCCCCCCCcccCCCCCCCCCCCCccc
Q 013569          243 LGGNSLTHGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMGSAHEMNSSSCPTGSLNSLK  322 (440)
Q Consensus       243 ~~~~~~~~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flqLPIeD~fL~~~~~~~~~~~~~~~~~~~~  322 (440)
                      ...+  ..+..||.+|+++|||||++||++|++||.|||+||++|||+|||||||+|.||...++...+           
T Consensus       273 ~~~~--~~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~LPieD~~l~k~~~~~~~-----------  339 (531)
T COG5259         273 ISLL--IRDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIEDNYLSKGDGKGDN-----------  339 (531)
T ss_pred             hhcc--cccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcCCcchhhhhcccCcCCC-----------
Confidence            7664  256799999999999999999999999999999999999999999999999999987641100           


Q ss_pred             ccccccccccccchhhhhhhhhccccccCCCCCcCCCccccCCCCcCCCCCChHHHHHHHHhhccChHHHHHHHHHHHH
Q 013569          323 EGQSASSENQNDVKMEDQVHDQMNESKQNGDAATEEPPAKRKRIAPLSDGGSTLIKQVAHISTMVGPHVTAAAAEAAVA  401 (440)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~PFs~a~NPVMs~vAFLas~V~P~VAaAAA~aAl~  401 (440)
                                                         +     .+.+||..++|||||+|+|||++|.|+|++..+++.++
T Consensus       340 -----------------------------------~-----~G~~~f~~seNPVlstis~L~~iV~p~v~s~~q~~~~k  378 (531)
T COG5259         340 -----------------------------------S-----KGRLPFDGSENPVLSTISFLAGIVNPRVQSEKQRAIIK  378 (531)
T ss_pred             -----------------------------------C-----CCccccccCCCchhhHHHHHHHhcCHHHHHHHhhhhhh
Confidence                                               1     13589999999999999999999999999888877533

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>cd02336 ZZ_RSC8 Zinc finger, ZZ type Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>PLN03000 amine oxidase Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PLN02328 lysine-specific histone demethylase 1 homolog Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN02529 lysine-specific histone demethylase 1 Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>cd02335 ZZ_ADA2 Zinc finger, ZZ type Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>cd02249 ZZ Zinc finger, ZZ type Back     alignment and domain information
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type Back     alignment and domain information
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type Back     alignment and domain information
>cd02345 ZZ_dah Zinc finger, ZZ type Back     alignment and domain information
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type Back     alignment and domain information
>cd02343 ZZ_EF Zinc finger, ZZ type Back     alignment and domain information
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd02334 ZZ_dystrophin Zinc finger, ZZ type Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>cd02344 ZZ_HERC2 Zinc finger, ZZ type Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type Back     alignment and domain information
>cd02337 ZZ_CBP Zinc finger, ZZ type Back     alignment and domain information
>PLN02976 amine oxidase Back     alignment and domain information
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription] Back     alignment and domain information
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only] Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>KOG4329 consensus DNA-binding protein [General function prediction only] Back     alignment and domain information
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
2fq3_A104 Structure And Function Of The Swirm Domain, A Conse 3e-16
2dce_A111 Solution Structure Of The Swirm Domain Of Human Kia 1e-04
>pdb|2FQ3|A Chain A, Structure And Function Of The Swirm Domain, A Conserved Protein Module Found In Chromatin Regulatory Complexes Length = 104 Back     alignment and structure 
Iteration: 1

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 53/85 (62%)
Query: 21  SHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVR 80
           S+S WF  + IH  E  +L EFF     S+TP++Y  YR+FM+N YR  P+   + T  R
Sbjct: 15  SYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTAR 74
Query: 81  KSLVGDVSLLHKVFRLLDEWGLINF 105
           +++ GD + L ++ + L +WGLIN+
Sbjct: 75  RNVSGDAAALFRLHKFLTKWGLINY 99
>pdb|2DCE|A Chain A, Solution Structure Of The Swirm Domain Of Human Kiaa1915 Protein Length = 111 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
2fq3_A104 Transcription regulatory protein SWI3; four-helix 7e-45
2dce_A111 KIAA1915 protein; swirm domain, structural genomic 2e-41
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 3e-13
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 4e-09
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 1e-07
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 2e-07
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 4e-06
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 1e-05
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 7e-05
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 2e-04
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 4e-04
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 6e-04
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18 Length = 104 Back     alignment and structure
 Score =  150 bits (381), Expect = 7e-45
 Identities = 35/94 (37%), Positives = 55/94 (58%)

Query: 17  YTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTF 76
               S+S WF  + IH  E  +L EFF     S+TP++Y  YR+FM+N YR  P+   + 
Sbjct: 11  GMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSV 70

Query: 77  TQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSR 110
           T  R+++ GD + L ++ + L +WGLIN+   S+
Sbjct: 71  TTARRNVSGDAAALFRLHKFLTKWGLINYQVDSK 104
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query440
2fq3_A104 Transcription regulatory protein SWI3; four-helix 100.0
2dce_A111 KIAA1915 protein; swirm domain, structural genomic 100.0
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.68
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.42
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.33
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.22
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.12
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.11
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.1
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.07
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.06
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.06
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 99.05
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.05
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 98.99
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 98.96
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 98.87
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.86
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.84
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 98.82
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.28
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.75
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.75
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.71
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.68
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.67
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.67
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.67
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.63
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.61
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 98.61
4gut_A 776 Lysine-specific histone demethylase 1B; histone de 98.59
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.58
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.57
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 98.51
2z3y_A 662 Lysine-specific histone demethylase 1; chromatin, 98.51
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.5
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.39
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.38
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 98.33
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 98.32
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 98.32
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 98.29
2crg_A70 Metastasis associated protein MTA3; transcription 98.29
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 98.22
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 98.2
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 98.09
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 97.8
2xag_A 852 Lysine-specific histone demethylase 1; amine oxida 97.68
2e5r_A63 Dystrobrevin alpha; ZZ domain, structural genomics 97.53
2dip_A98 Zinc finger SWIM domain-containing protein 2; ZZ d 97.3
2fc7_A82 ZZZ3 protein; structure genomics, ZZ domain, struc 97.17
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 96.7
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 96.65
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 96.58
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 96.43
2cuj_A108 Transcriptional adaptor 2-like; transcriptional re 96.37
2aqe_A90 Transcriptional adaptor 2, ADA2 alpha; helix-turn- 96.3
1tot_A52 CREB-binding protein; zinc binding, CBP, TAZ2, tra 96.27
2elj_A88 Transcriptional adapter 2; YDR448W, structural gen 95.98
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 94.81
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 95.7
2xag_B 482 REST corepressor 1; amine oxidase, chromatin regul 95.54
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 94.41
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 92.67
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 92.36
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 90.77
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 90.5
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 85.9
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 85.89
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18 Back     alignment and structure
Probab=100.00  E-value=2e-42  Score=293.88  Aligned_cols=93  Identities=38%  Similarity=0.746  Sum_probs=84.7

Q ss_pred             EecCCCCCCCCCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHH
Q 013569           17 YTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRL   96 (440)
Q Consensus        17 ivIPsy~~WF~~~~ih~iEk~~lpefF~g~~~~ktp~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~F   96 (440)
                      =.-|+|++||+|++||+|||++|||||+|++++|||++||+|||+||++||+||.+|||+|+||++|+|||++|+|||+|
T Consensus        11 ~~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh~F   90 (104)
T 2fq3_A           11 GMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKF   90 (104)
T ss_dssp             ------CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHH
T ss_pred             CCCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccccCCC
Q 013569           97 LDEWGLINFGAVS  109 (440)
Q Consensus        97 Le~wGlINy~~~~  109 (440)
                      ||+|||||||+++
T Consensus        91 Le~wGLIN~~v~~  103 (104)
T 2fq3_A           91 LTKWGLINYQVDS  103 (104)
T ss_dssp             HHHTTSSSSCC--
T ss_pred             HHHcCeeccCCCC
Confidence            9999999999997
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Back     alignment and structure
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Back     alignment and structure
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18 Back     alignment and structure
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A Back     alignment and structure
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Back     alignment and structure
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 440
d2fq3a185 a.4.1.18 (A:311-395) Transcription regulatory prot 2e-38
d2dw4a1102 a.4.1.18 (A:172-273) Lysine-specific histone demet 2e-29
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 2e-06
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 8e-06
d2crga157 a.4.1.3 (A:8-64) Metastasis associated protein MTA 1e-05
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 4e-04
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 8e-04
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 0.001
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 0.002
>d2fq3a1 a.4.1.18 (A:311-395) Transcription regulatory protein swi3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SWIRM domain
domain: Transcription regulatory protein swi3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  132 bits (333), Expect = 2e-38
 Identities = 33/84 (39%), Positives = 51/84 (60%)

Query: 23  SSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKS 82
           S WF  + IH  E  +L EFF     S+TP++Y  YR+FM+N YR  P+   + T  R++
Sbjct: 1   SKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRN 60

Query: 83  LVGDVSLLHKVFRLLDEWGLINFG 106
           + GD + L ++ + L +WGLIN+ 
Sbjct: 61  VSGDAAALFRLHKFLTKWGLINYQ 84
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query440
d2fq3a185 Transcription regulatory protein swi3 {Baker's yea 100.0
d2dw4a1102 Lysine-specific histone demethylase 1, LSD1 {Human 99.96
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.46
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.19
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.17
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.13
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.12
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.11
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.07
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 99.02
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.92
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 98.91
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 98.9
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 98.67
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 98.61
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 98.55
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.29
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.27
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 97.76
d2fc7a169 Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu 96.99
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 96.8
d2cuja1101 Transcriptional adaptor 2-like, TADA2L {Mouse (Mus 96.7
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 96.68
d1tota152 CREB-binding protein, CBP {Mouse (Mus musculus) [T 96.26
d2dipa185 Zinc finger ZZ-type-containing protein 2 {Human (H 95.8
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 95.52
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 83.45
>d2fq3a1 a.4.1.18 (A:311-395) Transcription regulatory protein swi3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SWIRM domain
domain: Transcription regulatory protein swi3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-36  Score=247.82  Aligned_cols=85  Identities=39%  Similarity=0.838  Sum_probs=83.8

Q ss_pred             CCCCCCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhcc
Q 013569           23 SSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGL  102 (440)
Q Consensus        23 ~~WF~~~~ih~iEk~~lpefF~g~~~~ktp~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGl  102 (440)
                      |+||++++||+|||++|||||++++.+|||++||+|||+||++||.||.+|||+|+||+++.||++++.|||+||++||+
T Consensus         1 s~WF~~~~i~~iE~~~lPeff~~~~~~kt~~~Yl~iRN~Il~~w~~np~~~Lt~~~~~~~~~~d~~~~~ri~~FL~~~G~   80 (85)
T d2fq3a1           1 SKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGL   80 (85)
T ss_dssp             CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHHHHHTTS
T ss_pred             CCCCCCCcCCHHHHHHCHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCeeeeHHHHHhhccCCHHHHHHHHHHHHHcCc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q 013569          103 INFGA  107 (440)
Q Consensus       103 INy~~  107 (440)
                      |||||
T Consensus        81 INf~v   85 (85)
T d2fq3a1          81 INYQV   85 (85)
T ss_dssp             SSSCC
T ss_pred             cCccC
Confidence            99997
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure