Citrus Sinensis ID: 013584

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
MKNSVSDHSFYIESDEEEDEEKVFDVNGGEEDQEENDGNDSDSSAENQQQTHPGSYNTSWPQSYRQSIDLYSSVPSPSLTFLGTPSLSRLSSSFLSSSLTRRHTPESLAATTKPLLPTVAYEQPQQQRRSSHTLLPPFPSRRSSLIKDSKSSRVSHEHPISRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTILRAVMSMF
cccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHEEHHHccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccHHHHHHHHHHHHHHHHHccc
ccccccccEEEEEccccHHHHHHccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccccccHHHHHHHHHHccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHEEHEEHccHcccc
mknsvsdhsfyiesdeeedeekvfdvnggeedqeendgndsdssaenqqqthpgsyntswpqsyRQSIDlyssvpspsltflgtpslsrlsssflsssltrrhtpeslaattkpllptvayeqpqqqrrsshtllppfpsrrsslikdskssrvshehpisrQSSYAQALLNGMNVLCGVgilstpyaakeggwFGLLILVAFGVLSFYTGILLRRcldsepgletypdigqaafgtAGRIAVSVILYAELYACCIEYIILesdnlsslfpnahlsfggfylnsHHLFALMTTLAVlptcwlrdLTVLSYISAGGVIASILVVLCLFWVGLVdqvnihskgtplnlatlpVAIGLYgycysghavfpniytsmaqpnqfpkVLITCFLICTAMYAGVAYMGYTMfgestlsqftlnmpqdlVATKIAVWTTILRAVMSMF
mknsvsdhsfyiesdeeedeeKVFDVNGGEEDQEENDGNDSDSSAENQQQTHPGSYNTSWPQSYRQSIDLYSSVPSPSLTFLGTPSLSRLSSSFLSSSLTRRHTPeslaattkpllpTVAYeqpqqqrrsshtllppfpsrrsslikdskssrvshehpiSRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTILRAVMSMF
MKNSVSDHSFYIesdeeedeeKVFDVnggeedqeendgndsdssAENQQQTHPGSYNTSWPQSYRQSIDLYSSVPSPSLTFLGTPslsrlsssflssslTRRHTPESLAATTKPLLPTVAYEQPQQQRRSSHTLLPPFPSRRSSLIKDSKSSRVSHEHPISRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTILRAVMSMF
*********************************************************************************************************************************************************************YAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTILRAV****
**********************************************************************************************************************************************************************AQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTILRAVMSMF
***********************FDVNG******************************SWPQSYRQSIDLYSSVPSPSLTFLGTPSLSRLSSSFLSSSLTRRHTPESLAATTKPLLPTVAY**********HTLLPPFPSRRS********************SSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTILRAVMSMF
**********************************************************SWPQSYRQSIDLYSSVPSPSLTFLGTPSLSRLSS******LT************************************************************SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTILRAVMSMF
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MKNSVSDHSFYIESDEEEDEEKVFDVNGGEEDQEENDGNDSDSSAENQQQTHPGSYNTSWPQSYRQSIDLYSSVPSPSLTFLGTPSLSRLSSSFLSSSLTRRHTPESLAATTKPLLPTVAYEQPQQQRRSSHTLLPPFPSRRSSLIKDSKSSRVSHEHPISRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTILRAVMSMF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query440 2.2.26 [Sep-21-2011]
P47082 602 Vacuolar amino acid trans yes no 0.561 0.410 0.349 7e-36
P34579 486 Vesicular GABA transporte yes no 0.640 0.580 0.282 2e-21
Q6PF45 518 Vesicular inhibitory amin N/A no 0.622 0.528 0.253 4e-15
P50944 713 Vacuolar amino acid trans no no 0.556 0.343 0.260 4e-13
Q6DIV6 518 Vesicular inhibitory amin yes no 0.597 0.507 0.242 2e-12
Q9H598 525 Vesicular inhibitory amin yes no 0.627 0.525 0.236 3e-12
Q10074 656 Vacuolar amino acid trans yes no 0.611 0.410 0.244 3e-12
Q95KE2 525 Vesicular inhibitory amin N/A no 0.627 0.525 0.236 4e-12
O35458 525 Vesicular inhibitory amin yes no 0.613 0.514 0.235 6e-12
O35633 525 Vesicular inhibitory amin yes no 0.613 0.514 0.235 7e-12
>sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  152 bits (383), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 93/266 (34%), Positives = 144/266 (54%), Gaps = 19/266 (7%)

Query: 160 ISRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGW-FGLLILVAFGVLSFYTGILLRRCL 218
           ++ QS+  Q + N +NVL G+G+L+ P   K  GW  GL +L  F + +F T  LL RCL
Sbjct: 204 LAGQSTAPQTIFNSINVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELLSRCL 263

Query: 219 DSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFG 278
           D++P L +Y D+G AAFGT GR  +S +   +L    +  +IL  D+L++LFP    +F 
Sbjct: 264 DTDPTLISYADLGYAAFGTKGRALISALFTLDLLGSGVSLVILFGDSLNALFPQYSTTF- 322

Query: 279 GFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQ---- 334
                    F +++   V P  ++  L+VLS IS  G++++   VL +   GL       
Sbjct: 323 ---------FKIVSFFIVTPPVFI-PLSVLSNISLLGILSTTGTVLVICCCGLYKSSSPG 372

Query: 335 --VN-IHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICT 391
             VN + +   P++L  L ++IGL   C+ GHAVFPN+ T M  P++F   L T + I +
Sbjct: 373 SLVNPMETSMWPIDLKHLCLSIGLLSACWGGHAVFPNLKTDMRHPDKFKDCLKTTYKITS 432

Query: 392 AMYAGVAYMGYTMFGESTLSQFTLNM 417
               G A +G+ MFG     + T N+
Sbjct: 433 VTDIGTAVIGFLMFGNLVKDEITKNV 458
Required for the vacuolar uptake of large neutral amino acids including tyrosine, glutamine, asparagine, isoleucine and leucine. Requires ATP for function.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|P34579|UNC47_CAEEL Vesicular GABA transporter OS=Caenorhabditis elegans GN=unc-47 PE=1 SV=2 Back     alignment and function description
>sp|Q6PF45|VIAAT_XENLA Vesicular inhibitory amino acid transporter OS=Xenopus laevis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|P50944|AVT4_YEAST Vacuolar amino acid transporter 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT4 PE=1 SV=1 Back     alignment and function description
>sp|Q6DIV6|VIAAT_XENTR Vesicular inhibitory amino acid transporter OS=Xenopus tropicalis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=1 SV=2 Back     alignment and function description
>sp|Q10074|AVT3_SCHPO Vacuolar amino acid transporter 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=avt3 PE=1 SV=1 Back     alignment and function description
>sp|Q95KE2|VIAAT_MACFA Vesicular inhibitory amino acid transporter OS=Macaca fascicularis GN=SLC32A1 PE=2 SV=1 Back     alignment and function description
>sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transporter OS=Rattus norvegicus GN=Slc32a1 PE=1 SV=1 Back     alignment and function description
>sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid transporter OS=Mus musculus GN=Slc32a1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query440
255580223439 amino acid transporter, putative [Ricinu 0.975 0.977 0.772 0.0
296085988 566 unnamed protein product [Vitis vinifera] 0.968 0.752 0.765 0.0
225448988 551 PREDICTED: vacuolar amino acid transport 0.968 0.773 0.765 0.0
30687791 550 transmembrane amino acid transporter-lik 0.972 0.778 0.723 0.0
15292735 550 unknown protein [Arabidopsis thaliana] 0.972 0.778 0.721 0.0
297827497 549 predicted protein [Arabidopsis lyrata su 0.970 0.777 0.739 0.0
224113081486 amino acid transporter [Populus trichoca 0.965 0.874 0.750 1e-180
224097816 554 amino acid transporter [Populus trichoca 0.981 0.779 0.758 1e-176
357443167 550 Amino acid transporter [Medicago truncat 0.945 0.756 0.722 1e-168
356535615 545 PREDICTED: vacuolar amino acid transport 0.959 0.774 0.725 1e-167
>gi|255580223|ref|XP_002530942.1| amino acid transporter, putative [Ricinus communis] gi|223529501|gb|EEF31457.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/435 (77%), Positives = 377/435 (86%), Gaps = 6/435 (1%)

Query: 1   MKNSVSDHSFYIESDEEEDEEKVFDVNGGEEDQEENDGNDSDSSAENQQQTHPGSYNTSW 60
           MKNSVS+ SFYIES+EE++E +  +    + +  E+D    DS A+N+QQ+  GSYNTSW
Sbjct: 1   MKNSVSEQSFYIESEEEDEENRGGEGGEDDGNDSESD----DSMADNRQQSKTGSYNTSW 56

Query: 61  PQSYRQSIDLYSSVPSPSLTFLGTPSLSRLSSSFLSSS-LTRRHTPESLAATTKPLLPTV 119
           PQSYRQSIDLYSSVPSPS+  LGTP+LSRL SSFLSSS LTRRHTPESL + TKPL+  V
Sbjct: 57  PQSYRQSIDLYSSVPSPSV-ILGTPTLSRLGSSFLSSSILTRRHTPESLPSVTKPLISRV 115

Query: 120 AYEQPQQQRRSSHTLLPPFPSRRSSLIKDSKSSRVSHEHPISRQSSYAQALLNGMNVLCG 179
             E+  Q RRSSH+LLPP PSRRSS+ KD K+S++SHE PISRQSSY QA++NGMNVLCG
Sbjct: 116 EDEELPQHRRSSHSLLPPIPSRRSSIRKDEKASQISHELPISRQSSYGQAVINGMNVLCG 175

Query: 180 VGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239
           VGILSTPYAAKEGGW GL IL+ F VLSFYTG+LLR CLDSEPGLETYPDIGQAAFGT G
Sbjct: 176 VGILSTPYAAKEGGWLGLSILLIFAVLSFYTGMLLRYCLDSEPGLETYPDIGQAAFGTIG 235

Query: 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPT 299
           R+A+S+ILY ELYACC+EYIILESDNLSSLFPNAHLSFGG  LNSHHLFAL+TTLAVLPT
Sbjct: 236 RVAISIILYVELYACCVEYIILESDNLSSLFPNAHLSFGGLELNSHHLFALLTTLAVLPT 295

Query: 300 CWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYC 359
            WLRDL+VLSYISAGGVIAS+LVV+CLFWVGLVD V IHSKG+ LNL TLPVAIGLYGYC
Sbjct: 296 VWLRDLSVLSYISAGGVIASVLVVVCLFWVGLVDNVGIHSKGSALNLGTLPVAIGLYGYC 355

Query: 360 YSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQ 419
           YSGHAVFPNIYTSMAQPN++P VL+ CF ICT MYAG A MGYTMFGEST SQFTLNMPQ
Sbjct: 356 YSGHAVFPNIYTSMAQPNKYPAVLLACFAICTLMYAGAAVMGYTMFGESTASQFTLNMPQ 415

Query: 420 DLVATKIAVWTTILR 434
           DLVA+KIAVWTT++ 
Sbjct: 416 DLVASKIAVWTTVVN 430

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296085988|emb|CBI31429.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225448988|ref|XP_002270908.1| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|30687791|ref|NP_850312.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gi|330254544|gb|AEC09638.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15292735|gb|AAK92736.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297827497|ref|XP_002881631.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297327470|gb|EFH57890.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224113081|ref|XP_002316384.1| amino acid transporter [Populus trichocarpa] gi|222865424|gb|EEF02555.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224097816|ref|XP_002311078.1| amino acid transporter [Populus trichocarpa] gi|222850898|gb|EEE88445.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357443167|ref|XP_003591861.1| Amino acid transporter [Medicago truncatula] gi|355480909|gb|AES62112.1| Amino acid transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|356535615|ref|XP_003536340.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query440
TAIR|locus:2056118 550 AT2G39130 [Arabidopsis thalian 0.881 0.705 0.745 7.2e-155
TAIR|locus:2082652 546 AT3G54830 "AT3G54830" [Arabido 0.945 0.761 0.623 2.8e-137
TAIR|locus:2185158 550 AT5G02180 [Arabidopsis thalian 0.822 0.658 0.503 1.7e-98
TAIR|locus:2185143 526 AT5G02170 [Arabidopsis thalian 0.620 0.519 0.593 3.7e-97
TAIR|locus:2083529 524 AT3G09330 "AT3G09330" [Arabido 0.825 0.692 0.490 1.1e-92
TAIR|locus:2083549 528 AT3G09340 "AT3G09340" [Arabido 0.825 0.687 0.490 1.1e-92
TAIR|locus:2063255 536 AT2G41190 [Arabidopsis thalian 0.754 0.619 0.469 3.5e-86
TAIR|locus:2150911 423 AT5G15240 [Arabidopsis thalian 0.654 0.680 0.410 4.7e-64
TAIR|locus:2087012 405 AT3G28960 "AT3G28960" [Arabido 0.620 0.674 0.410 5.4e-63
TAIR|locus:2149045 426 AT5G16740 [Arabidopsis thalian 0.647 0.669 0.368 3e-53
TAIR|locus:2056118 AT2G39130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1510 (536.6 bits), Expect = 7.2e-155, P = 7.2e-155
 Identities = 290/389 (74%), Positives = 320/389 (82%)

Query:    46 ENQQQTHPGSYNTSWPQSYRQSIDLYSSVPSPSLTFLGTPXXXXXXXXXXXXXXTRRHTP 105
             ENQ    P SY T+WPQSYRQSIDLYSSVPSP + FLG                 RRHTP
Sbjct:    41 ENQAHIKPSSYTTAWPQSYRQSIDLYSSVPSPGIGFLGNNSMTRFGSSFLSSGLIRRHTP 100

Query:   106 ESLAATTKPLLPTVAYEQPQQQRR-SSHTLLPPFPSRRSSLIKDSKSSRVSHEHPISRQS 164
             ESL   TKPLL   A EQ   + R SS  LL P PSRR S+ KD KSS VSHE P+SR S
Sbjct:   101 ESLPTVTKPLLEEQADEQALPKHRLSSQGLLSPIPSRRGSMRKDEKSSMVSHEIPMSRNS 160

Query:   165 SYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGL 224
             SY QA+LNG+NVLCGVGILSTPYAAKEGGW GL+IL  +G+LSFYTGILLR CLDSE  L
Sbjct:   161 SYGQAVLNGLNVLCGVGILSTPYAAKEGGWLGLMILFVYGLLSFYTGILLRYCLDSESDL 220

Query:   225 ETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNS 284
             ETYPDIGQAAFGT GRI VS++LY ELYACC+EYIILESDNLSSL+PNA LS GGF L++
Sbjct:   221 ETYPDIGQAAFGTTGRIFVSIVLYLELYACCVEYIILESDNLSSLYPNAALSIGGFQLDA 280

Query:   285 HHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPL 344
              HLFAL+TTLAVLPT WLRDL+VLSYISAGGVIAS+LVVLCLFW+GLVD+V IHSKGT L
Sbjct:   281 RHLFALLTTLAVLPTVWLRDLSVLSYISAGGVIASVLVVLCLFWIGLVDEVGIHSKGTTL 340

Query:   345 NLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTM 404
             NL+TLPVAIGLYGYCYSGHAVFPNIYTSMA+P+Q+P VL+TCF ICT MYAGVA MGYTM
Sbjct:   341 NLSTLPVAIGLYGYCYSGHAVFPNIYTSMAKPSQYPAVLLTCFGICTLMYAGVAVMGYTM 400

Query:   405 FGESTLSQFTLNMPQDLVATKIAVWTTIL 433
             FGEST SQFTLN+PQDL+ATKIAVWTT++
Sbjct:   401 FGESTQSQFTLNLPQDLIATKIAVWTTVV 429
GO:0005886 "plasma membrane" evidence=ISM
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2082652 AT3G54830 "AT3G54830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185158 AT5G02180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185143 AT5G02170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083529 AT3G09330 "AT3G09330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083549 AT3G09340 "AT3G09340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063255 AT2G41190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150911 AT5G15240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087012 AT3G28960 "AT3G28960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149045 AT5G16740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018153001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (551 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
pfam01490 406 pfam01490, Aa_trans, Transmembrane amino acid tran 3e-47
COG0814 415 COG0814, SdaC, Amino acid permeases [Amino acid tr 2e-27
TIGR00837 381 TIGR00837, araaP, aromatic amino acid transport pr 7e-09
PTZ00206 467 PTZ00206, PTZ00206, amino acid transporter; Provis 5e-06
pfam03222 393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 1e-05
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  167 bits (424), Expect = 3e-47
 Identities = 86/280 (30%), Positives = 141/280 (50%), Gaps = 18/280 (6%)

Query: 162 RQSSYAQALLNGMNVLCGVGILSTPYAAKEGGW-FGLLILVAFGVLSFYTGILLRRCLD- 219
              S  QA+ N +  + G G+LS PYA K+ GW  GL++LV  G++S YT  LL +C   
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 220 ----SEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHL 275
                    ++Y D+G   FG  G++ +   +   L+  CI Y+I   DNL ++F     
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFD---- 116

Query: 276 SFGGFYLNSHHLFALMTTLAVLPTCWLRD---LTVLSYISAGGVIASILVVLCLFWVGLV 332
           SF      S   F ++  L  +P  ++ +   L++LS ++A   +  +++VL +  +G++
Sbjct: 117 SFFDTCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVL 176

Query: 333 DQVNIHSKGTP--LNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQF---PKVLITCF 387
               + S G    + LA L +AIG+  + + GHAV   I  +M  P++F    KVL+T  
Sbjct: 177 TAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAI 236

Query: 388 LICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIA 427
           +I T +Y  V  +GY  FG +      LN+P+      IA
Sbjct: 237 IIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIA 276

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 440
KOG1303 437 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206 467 amino acid transporter; Provisional 100.0
KOG1304 449 consensus Amino acid transporters [Amino acid tran 100.0
PF01490 409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074 473 auxin influx permease; Provisional 99.97
KOG4303 524 consensus Vesicular inhibitory amino acid transpor 99.95
KOG1305 411 consensus Amino acid transporter protein [Amino ac 99.95
COG0814 415 SdaC Amino acid permeases [Amino acid transport an 99.95
KOG1287 479 consensus Amino acid transporters [Amino acid tran 99.85
TIGR00837 381 araaP aromatic amino acid transport protein. aroma 99.83
PRK10483 414 tryptophan permease; Provisional 99.8
PF03222 394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.79
PRK09664 415 tryptophan permease TnaB; Provisional 99.78
PRK10435 435 cadB lysine/cadaverine antiporter; Provisional 99.78
PRK10655 438 potE putrescine transporter; Provisional 99.77
COG1113 462 AnsP Gamma-aminobutyrate permease and related perm 99.77
PRK10249 458 phenylalanine transporter; Provisional 99.75
PRK11021 410 putative transporter; Provisional 99.74
TIGR01773 452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.74
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.74
PRK10644 445 arginine:agmatin antiporter; Provisional 99.74
PRK15049 499 L-asparagine permease; Provisional 99.74
PRK11387 471 S-methylmethionine transporter; Provisional 99.73
PRK11049 469 D-alanine/D-serine/glycine permease; Provisional 99.73
PRK15132 403 tyrosine transporter TyrP; Provisional 99.73
TIGR00930 953 2a30 K-Cl cotransporter. 99.72
PRK10746 461 putative transport protein YifK; Provisional 99.72
PRK10836 489 lysine transporter; Provisional 99.71
PRK10238 456 aromatic amino acid transporter; Provisional 99.71
TIGR00909 429 2A0306 amino acid transporter. 99.71
PRK10580 457 proY putative proline-specific permease; Provision 99.71
TIGR00911 501 2A0308 L-type amino acid transporter. 99.69
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.68
TIGR00913 478 2A0310 amino acid permease (yeast). 99.67
TIGR00905 473 2A0302 transporter, basic amino acid/polyamine ant 99.66
TIGR03810 468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.65
PRK11357 445 frlA putative fructoselysine transporter; Provisio 99.64
PRK10197 446 gamma-aminobutyrate transporter; Provisional 99.64
TIGR00908 442 2A0305 ethanolamine permease. The three genes used 99.63
TIGR00814 397 stp serine transporter. The HAAAP family includes 99.62
COG0833 541 LysP Amino acid transporters [Amino acid transport 99.59
PRK13629 443 threonine/serine transporter TdcC; Provisional 99.57
KOG1286 554 consensus Amino acid transporters [Amino acid tran 99.56
PF13520 426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.55
TIGR03428 475 ureacarb_perm permease, urea carboxylase system. A 99.54
COG0531 466 PotE Amino acid transporters [Amino acid transport 99.51
PF03845320 Spore_permease: Spore germination protein; InterPr 99.46
PRK15238 496 inner membrane transporter YjeM; Provisional 99.42
TIGR00907 482 2A0304 amino acid permease (GABA permease). 99.39
PF00324 478 AA_permease: Amino acid permease; InterPro: IPR004 99.31
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.28
TIGR03813 474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.27
KOG3832319 consensus Predicted amino acid transporter [Genera 99.01
COG3949349 Uncharacterized membrane protein [Function unknown 98.59
KOG1289 550 consensus Amino acid transporters [Amino acid tran 98.53
PRK12488 549 acetate permease; Provisional 98.3
TIGR00800 442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.24
TIGR00813 407 sss transporter, SSS family. have different number 98.22
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.19
PRK09395 551 actP acetate permease; Provisional 98.19
TIGR02119 471 panF sodium/pantothenate symporter. Pantothenate ( 98.15
PRK09442 483 panF sodium/panthothenate symporter; Provisional 98.14
PRK11375 484 allantoin permease; Provisional 98.07
COG1457 442 CodB Purine-cytosine permease and related proteins 98.05
COG0591 493 PutP Na+/proline symporter [Amino acid transport a 98.04
PRK11017 404 codB cytosine permease; Provisional 98.01
PF00474 406 SSF: Sodium:solute symporter family; InterPro: IPR 97.98
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 97.97
TIGR02358 386 thia_cytX probable hydroxymethylpyrimidine transpo 97.93
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.84
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 97.8
TIGR00835 425 agcS amino acid carrier protein. Members of the AG 97.8
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.73
COG1953 497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.71
TIGR02121 487 Na_Pro_sym sodium/proline symporter. This family c 97.67
PRK15419 502 proline:sodium symporter PutP; Provisional 97.64
PRK10484 523 putative transporter; Provisional 97.54
PF02133 440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.45
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 97.39
PHA02764 399 hypothetical protein; Provisional 97.26
COG1966 575 CstA Carbon starvation protein, predicted membrane 97.11
PRK15015 701 carbon starvation protein A; Provisional 97.06
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.05
COG0733 439 Na+-dependent transporters of the SNF family [Gene 97.05
PF01235 416 Na_Ala_symp: Sodium:alanine symporter family; Inte 96.63
COG4147 529 DhlC Predicted symporter [General function predict 96.41
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 96.05
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 96.03
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 95.93
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 95.32
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 95.16
PF01566 358 Nramp: Natural resistance-associated macrophage pr 94.94
PRK15433439 branched-chain amino acid transport system 2 carri 94.27
KOG2466 572 consensus Uridine permease/thiamine transporter/al 93.62
KOG1289550 consensus Amino acid transporters [Amino acid tran 93.39
PRK00701 439 manganese transport protein MntH; Reviewed 91.25
KOG3659 629 consensus Sodium-neurotransmitter symporter [Signa 91.13
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 90.97
COG1914 416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 90.83
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 88.97
COG4145 473 PanF Na+/panthothenate symporter [Coenzyme metabol 88.39
PRK09928 679 choline transport protein BetT; Provisional 88.28
PLN00151 852 potassium transporter; Provisional 87.27
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 87.07
PRK15433 439 branched-chain amino acid transport system 2 carri 84.93
PF05525 427 Branch_AA_trans: Branched-chain amino acid transpo 84.76
PF10446458 DUF2457: Protein of unknown function (DUF2457); In 84.73
PRK09950 506 putative transporter; Provisional 84.18
PLN03223 1634 Polycystin cation channel protein; Provisional 82.57
TIGR00907482 2A0304 amino acid permease (GABA permease). 80.29
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1e-40  Score=336.67  Aligned_cols=275  Identities=39%  Similarity=0.692  Sum_probs=242.8

Q ss_pred             CCCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC-----HHHHHHH
Q 013584          160 ISRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLET-----YPDIGQA  233 (440)
Q Consensus       160 ~~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~s-----y~~i~~~  233 (440)
                      .+|+.|++++.+++++.++|+|+|++|+|++++||+ |++++++++++++||+.+|++|.+.++...+     |+|++++
T Consensus        34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~  113 (437)
T KOG1303|consen   34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA  113 (437)
T ss_pred             cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence            378899999999999999999999999999999998 8999999999999999999999987766555     9999999


Q ss_pred             HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHH
Q 013584          234 AFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISA  313 (440)
Q Consensus       234 ~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~  313 (440)
                      +||+++++++.+++.+.+++++++|++..++++..+++....+..  .++ ...+.++++++.+|++++++++.++|+|.
T Consensus       114 afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~--~l~-~~~f~iif~~i~~~~s~lp~~~~l~~~S~  190 (437)
T KOG1303|consen  114 AFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN--SLD-KQYFIIIFGLIVLPLSQLPNFHSLSYLSL  190 (437)
T ss_pred             HhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-ceehhhhHHHHHHHHHHCCCcchhHHHHH
Confidence            999999999999999999999999999999999999987654321  233 46888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhcccccCCCCC-CCCCCCCch---HHHHHHHHHHhhcccchHHHHhhccCCCChhhHHHHHHHH
Q 013584          314 GGVIASILVVLCLFWVGLVDQVNIHSK-GTPLNLATL---PVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLI  389 (440)
Q Consensus       314 ~~~i~~i~~ii~ii~~~~~~~~~~~~~-~~~~~~~~~---~~a~~~~~faf~g~~~i~~i~~emk~p~k~~~ai~~a~~i  389 (440)
                      ++.+.+++..+++++.++.++.+.+.+ .....+...   ++|+|++.|||+||.++|+|+..||+|.+++|++.+++.+
T Consensus       191 ~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~~  270 (437)
T KOG1303|consen  191 VGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISYII  270 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHHHH
Confidence            999999999999999998887665333 333333333   5999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCchhhhhcCC--CCchHH-HHHHHHHHHHHhhc
Q 013584          390 CTAMYAGVAYMGYTMFGESTLSQFTLNM--PQDLVA-TKIAVWTTILRAVM  437 (440)
Q Consensus       390 ~~~lY~~v~~~gy~~fG~~~~~~il~nl--p~~~~~-~~ia~~~~vi~~~t  437 (440)
                      ++++|+.+|++||++||+.+.+|++.|+  |+.... .++++++.++.+++
T Consensus       271 ~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~  321 (437)
T KOG1303|consen  271 VTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQ  321 (437)
T ss_pred             HHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999999999999  444433 44777777777654

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 87/558 (15%), Positives = 153/558 (27%), Gaps = 201/558 (36%)

Query: 7   DHSFYIESDEEEDEEKVFDVNGGEEDQEENDGNDSDSSAENQQQTHPGSYNTSWPQSYRQ 66
           ++ F +   + E  +         E Q +   ND+   A+         YN S  Q Y +
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAK---------YNVSRLQPYLK 139

Query: 67  SID-LYSSVPSPSLTFLGTPSL--SRLSSSFLSS--------------SLTRRHTPESLA 109
               L    P+ ++   G      + ++     S              +L   ++PE++ 
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 110 ATTKPLLPTVAYEQPQQQRRSSHTLLPPFPSRRSSLIKDSKSSRVSHEHPISRQSSYAQA 169
              + LL  +    P    RS H+        R   I+            + +   Y   
Sbjct: 200 EMLQKLLYQI---DPNWTSRSDHSSNIK---LRIHSIQAELRR-------LLKSKPYENC 246

Query: 170 LL-----------NGMNVLCGVGILSTPYAA---KEGGWFGLLILVAFGVLSFYTG---I 212
           LL           N  N+ C + +L+T +              I +    ++        
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 213 LLRRCLDSEPG------LETYPDIGQAAFGTAGRIAVSVILYAEL---YACCIEYII-LE 262
           LL + LD  P       L T P              +S+I  AE         +    + 
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNP------------RRLSII--AESIRDGLATWDNWKHVN 351

Query: 263 SDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILV 322
            D L+++      S     L       +   L+V P          ++I           
Sbjct: 352 CDKLTTII---ESSLN--VLEPAEYRKMFDRLSVFP----PS----AHIPTI-------- 390

Query: 323 VLCLFWV-----------------GLVDQ------VNIHS-----KGTPLNLATL----- 349
           +L L W                   LV++      ++I S     K    N   L     
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 350 ---------------PVAIGLYGYCYSGH-----------AVFPNIYTSMAQPNQFPKVL 383
                          P  +  Y Y + GH            +F  ++             
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR--------- 501

Query: 384 ITCFL---ICTAMYAGVA-------------YMGYTMFGESTLSQ-------FTLNMPQD 420
              FL   I     A  A             Y  Y    +    +       F   + ++
Sbjct: 502 ---FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 421 LVATKIAVWTTILR-AVM 437
           L+ +K   +T +LR A+M
Sbjct: 559 LICSK---YTDLLRIALM 573

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query440
3l1l_A 445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.8
3gia_A 444 Uncharacterized protein MJ0609; membrane protein, 99.71
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.59
2jln_A 501 MHP1; hydantoin, transporter, membrane protein, nu 98.66
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 97.93
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.59
2a65_A 519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.38
4ain_A 539 Glycine betaine transporter BETP; membrane protein 87.71
2wsw_A509 BCCT family betaine/carnitine/choline transporter; 80.97
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.80  E-value=6.2e-18  Score=172.60  Aligned_cols=241  Identities=10%  Similarity=0.102  Sum_probs=177.3

Q ss_pred             CCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHh
Q 013584          161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGR  240 (440)
Q Consensus       161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~  240 (440)
                      +|+++.+++++..++++||+|++.+|..+.++|..+++.+++.++++...+..+.+...+.|....+..+.++.+|++.+
T Consensus         7 ~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~g   86 (445)
T 3l1l_A            7 AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLG   86 (445)
T ss_dssp             CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHHHH
T ss_pred             CCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCChHH
Confidence            68899999999999999999999999988888987788888888888888999999988888877888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Q 013584          241 IAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASI  320 (440)
Q Consensus       241 ~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i  320 (440)
                      +++.|.+++........+....++++..+++....+   +   ....+.++..+++.. ...+..+...++..+.++..+
T Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~-in~~g~~~~~~~~~~~~~~~i  159 (445)
T 3l1l_A           87 YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP---W---VLTITCVVVLWIFVL-LNIVGPKMITRVQAVATVLAL  159 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSH---H---HHHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccccc---H---HHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHH
Confidence            999999999887777888888888888877653211   0   011222222222222 223356666666655555444


Q ss_pred             HHHHHhhhhhcccc-c-CCCCCCC---CCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHHHHHHHHHHHHH
Q 013584          321 LVVLCLFWVGLVDQ-V-NIHSKGT---PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTAMY  394 (440)
Q Consensus       321 ~~ii~ii~~~~~~~-~-~~~~~~~---~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~~a~~i~~~lY  394 (440)
                      +.++.+++.++... . .+.....   ..++.++..++...+|+|.|++.+..+.+|+|||+| +||++..++.+++++|
T Consensus       160 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y  239 (445)
T 3l1l_A          160 IPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCY  239 (445)
T ss_dssp             HHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHH
Confidence            44444444443221 1 1111111   123567889999999999999999999999999987 9999999999999999


Q ss_pred             HHHHHHHHHHhcCC
Q 013584          395 AGVAYMGYTMFGES  408 (440)
Q Consensus       395 ~~v~~~gy~~fG~~  408 (440)
                      +++.++.....+.+
T Consensus       240 ~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          240 VLSTTAIMGMIPNA  253 (445)
T ss_dssp             HHHHHHHHHHSCTT
T ss_pred             HHHHHHHHhcCCHH
Confidence            99999888877643
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query440
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 96.99
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.99  E-value=0.11  Score=50.84  Aligned_cols=104  Identities=19%  Similarity=0.176  Sum_probs=64.6

Q ss_pred             CCHHHHHHHHHHhhhccc-cchhHHH-HHhhCHHHHH----HHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhh
Q 013584          164 SSYAQALLNGMNVLCGVG-ILSTPYA-AKEGGWFGLL----ILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT  237 (440)
Q Consensus       164 ~s~~~~~~~ii~~iIG~G-iLslP~a-~~~~G~~g~i----lli~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~  237 (440)
                      .+..+.++..++..+|-| +.-.|+- .+++|..-++    .++++|+=..+.=..+++.. +.+....+..+.....+.
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~-~~g~i~~~~~i~~~~~~~   83 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYG-GAQGHGTTPAIFYLLWRN   83 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HTTTCCSHHHHHHHHSCS
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCcccHHHHHHHHhccC
Confidence            578899999999999999 7788987 5666743222    22334443344445667765 566667888877776654


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 013584          238 AGRIAVSVILYAELYACCIEYIILESDNLSS  268 (440)
Q Consensus       238 ~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~  268 (440)
                      +....+.+...+..+..++-|.+..+-.+..
T Consensus        84 ~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y  114 (509)
T d2a65a1          84 RFAKILGVFGLWIPLVVAIYYVYIESWTLGF  114 (509)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444455555555566655554444