Citrus Sinensis ID: 013585

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
Protein Sequence
MEQKGEMGKEFKSQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHATTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGASSSNTGSTSSRMSGVTLQEVPQTSGPYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFPDINLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLIVNGSVPIEIDDISTDADIDALLESSGLWDIVHSPVPEDIESTSVDVKTVGNEMQAIENGWNKVQSMDQLTEQMGLLNSETKEV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEEccccccccHHcHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcHHHccccccccccccccEcccccHHHHccHHHHcccHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHcccccccccccccccccccccEEEEcccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHHccccccccHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
meqkgemgkefKSQVYHNLIskgfrkvdpdrwefaneGFLRGQKHLLRSisrrkpahghghqqshqqnaqsssvgacvevgkfGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRrirqegvaeddhattadgqivkyqpSMNEAAKSMLRKIIKMESSQLEsfnnnhdnyligdgasssntgstssrmsgvtlqevpqtsgpyapaasgiladgpsaaaterqsssraiasektttdqfpdINLLVAAQEatslpisesdvimpdlaqipeimpesmdgipaesfigsrmenggyvdptslivngsvpieiddistdADIDALLessglwdivhspvpediestsVDVKTVGNEMQAIENGWNKVQSMDQLTEQMGllnsetkev
Flexible Loop (DISEMBL)
meqkgemgkefkSQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQqshqqnaqssSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLrqqqqasdsQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAeankkrrirqegvaeddhattadgqivkyqpSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGASSSNTGSTSSRMSGVTLQEVPQTSGPYAPAASGILADGPSAAATERQSssraiasektttdqfpdINLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLIVNGSVPIEIDDISTDADIDALLESSGLWDIVHSPVPEDIESTSVDVKTVGNEMQAIENGWNKVQSMDQLTEqmgllnsetkev
Low Complexity Region (SEG)
MEQKGEMGKEFKSQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPahghghqqshqqnaqsssVGACVEVGKFGLEEEVERLKRDKNVLMQELVrlrqqqqasdsqlqTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHATTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIgdgasssntgstssrmsgVTLQEVPQTSGPYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFPDINLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLIVNGSVPieiddistdadidALLESSGLWDIVHSPVPEDIESTSVDVKTVGNEMQAIENGWNKVQSMDQLTEQMGLLNSETKEV
Disordered region (IsUnstruct)
*************QVYHNLISKGFRKVDPDRWEFANEGFLRGQKHL*****************************ACVEVGKFGLE*************************************************AFLAKAVQSPGFLAQF************************************************************************************************************************************************DINLLVAA************VI**********************FIGSRMENGGYVDPTSLIVNGSVPIEIDDISTDADIDALLESSGLWDIVHSPVP***********************************************
Disordered Region (DISOPRED)
**QKGEMGKEFKSQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLR************************************************NVLMQELVRLRQQQQASDSQLQTMVQR*************************************************************************************************************************************************************************************************************************************************************ALLESSGLWDI************************************DQLTEQM*L********
Disordered Region (DISEMBL)
**********FKSQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLRSISR***********************ACVEVGKFGLEEEVERLKRDKNVLMQELVRL***********QTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHATTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGAS***********************GPYAPAASGILA***********************TDQFPDINLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLIVNGSVPIEIDDISTDADIDALLESSGLWDIVHSPVPEDIESTSVDVKTVGNEMQAIENGWNKVQSMDQLTEQMGLLNSETKEV
Disordered Region (DISPRO)
***KGEMGKEFKSQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLRSISR******************************FGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIA***********************GQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYL*********************************************************************************SL*ISESDVIMPDLA*************************************************DADIDALLESSGLWDIVHSPVPE*************************VQ**********LL*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQKGEMGKEFKSQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSSSVGACVEVGxxxxxxxxxxxxxxxxxxxxxxxxxxxxQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHATTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGASSSNTGSTSSRMSGVTLQEVPQTSGPYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFPDINLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLIVNGSVPIEIDDISTDADIDALLESSGLWDIVHSPVPEDIESTSVDVKTVGNEMQAIENGWNKVQSMDQLTEQMGLLNSETKEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	440	2.2.26 [Sep-21-2011]
Q40152	527	Heat shock factor protein	N/A	no	0.945	0.789	0.527	1e-111
P41153	527	Heat shock factor protein	N/A	no	0.927	0.774	0.524	1e-108
Q9LQM7	485	Heat stress transcription	yes	no	0.884	0.802	0.474	1e-102
Q84T61	506	Heat stress transcription	yes	no	0.929	0.808	0.461	2e-92
P41151	495	Heat stress transcription	no	no	0.861	0.765	0.425	4e-80
O81821	481	Heat stress transcription	no	no	0.861	0.787	0.433	5e-75
Q9SCW5	468	Heat stress transcription	no	no	0.865	0.814	0.410	5e-72
Q6VBB2	372	Heat stress transcription	no	no	0.372	0.440	0.52	1e-40
Q8H7Y6	359	Heat stress transcription	no	no	0.340	0.417	0.490	3e-39
Q6F388	357	Heat stress transcription	no	no	0.370	0.456	0.5	6e-39

>sp|Q40152|HSF8_SOLLC Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1

 Score =  401 bits (1031), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 242/459 (52%), Positives = 303/459 (66%), Gaps = 43/459 (9%)

Query: 4   KGEMGKEFKSQVYHNLI----SKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGH 59
           K  + K FK   + + +    + GFRKVDPDRWEFANEGFLRGQKHLL+SISRRKPAHGH
Sbjct: 76  KDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGH 135

Query: 60  GH---------QQSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQ 110
                      QQ  Q    S+SVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQ
Sbjct: 136 AQQQQQPHGNAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQ 195

Query: 111 QASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRR 170
           QA+D+QLQ MVQRLQGME R QQMM+FLAKAV  PGFLAQFVQQQN+SNKRIAE +KKRR
Sbjct: 196 QATDNQLQGMVQRLQGMELRQQQMMSFLAKAVNRPGFLAQFVQQQNESNKRIAEGSKKRR 255

Query: 171 IRQEGVAEDDHATTADGQIVKYQPSMNEAAKSMLRKIIKMESS-QLESFNNNHDNYLIGD 229
           I+Q+  ++D   T ADGQIVKYQP +NEAAK+MLR++ K++SS +L++F+N+ +++LIGD
Sbjct: 256 IKQDIESQDPSVTPADGQIVKYQPGINEAAKAMLRELSKLDSSPRLDNFSNSPESFLIGD 315

Query: 230 GASSSNTGSTSSRMSGVTLQEVPQTSG-PYAPAASGILADGPSAAATERQSSSRAIASEK 288
           G+  SN  ++S R+SGVTLQEVP TSG P    AS I       A +E QSS     SE 
Sbjct: 316 GSPQSN--ASSGRVSGVTLQEVPPTSGKPLLNTASAIAGQSLLPATSEMQSSHLGTCSE- 372

Query: 289 TTTDQFPDINLLVAAQEATSLPISESDVIMPDLAQIPEIMPE-SMDGIPAESFIGSRMEN 347
              +Q  +I  LV  ++     +S SD+IMP+L+Q+  I+PE + D I  +SF+ +    
Sbjct: 373 IINNQLSNIIPLVGGEDLHPGSLSASDMIMPELSQLQGILPENNTDVIGCDSFMDTSAVE 432

Query: 348 GGYVDPTSLIVNGSVPIEIDDISTDADID---ALLE------SSG--LWD-IVHSPVPED 395
           G       L + GS       +S  ADID    LL+      S G   W+  + SP   D
Sbjct: 433 GK----VGLDIIGSC------LSPGADIDWQSGLLDEIEEFPSVGDPFWEKFLQSPCSPD 482

Query: 396 IESTSVDVKTVGNEMQAIENGWNKVQSMDQLTEQMGLLN 434
             +   D+    +E +   NGW+K Q+M+ LTEQMG  N
Sbjct: 483 -AAMDDDISNT-SETKPQINGWDKTQNMEHLTEQMGATN 519

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Solanum lycopersicum (taxid: 4081)

>sp|P41153|HSF8_SOLPE Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1

 Score =  392 bits (1008), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 244/465 (52%), Positives = 308/465 (66%), Gaps = 57/465 (12%)

Query: 4   KGEMGKEFKSQVYHNLI----SKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGH 59
           K  + K FK   + + +    + GFRKVDPDRWEFANEGFLRGQKHLL+SISRRKPAHGH
Sbjct: 78  KDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGH 137

Query: 60  GHQQSH---------QQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQ 110
             QQ           Q    S+SVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQ
Sbjct: 138 AQQQQQPHGHAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQ 197

Query: 111 QASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRR 170
           Q++D+QLQ MVQRLQGME R QQMM+FLAKAV SPGFLAQFVQQQN+SNKRIAE +KKRR
Sbjct: 198 QSTDNQLQGMVQRLQGMELRQQQMMSFLAKAVNSPGFLAQFVQQQNESNKRIAEGSKKRR 257

Query: 171 IRQEGVAEDDHATTADGQIVKYQPSMNEAAKSMLRKIIKMESS-QLESFNNNHDNYLIGD 229
           I+Q+  ++D   T ADGQIVKYQP +NEAAK+MLR++ K++SS +LE+F+N+ +++LIGD
Sbjct: 258 IKQDIESQDPSVTPADGQIVKYQPGINEAAKAMLRELSKLDSSPRLENFSNSPESFLIGD 317

Query: 230 GASSSNTGSTSSRMSGVTLQEVPQTSG-PYAPAASGILADGPSAAATERQSSSRAIASEK 288
           G+  SN  ++S R+SGVTLQEVP TSG P    AS I       A +E QSS     SE 
Sbjct: 318 GSPQSN--ASSGRVSGVTLQEVPPTSGKPLLNTASAIAGQSLLPATSEMQSSHLGTCSE- 374

Query: 289 TTTDQFPDINLLVAAQEATSLPISESDVIMPDLAQIPEIMPE-SMDGIPAESFIGSRMEN 347
              +Q  +I  LV  ++     +S SD+IMP+L+Q+  I+PE + D I  +SF+      
Sbjct: 375 IINNQLSNIIPLVGGEDLHPGSLSASDMIMPELSQLQGILPENNTDVIGCDSFM------ 428

Query: 348 GGYVDPTSLIVNGSVPIEIDDISTDADID---ALLE------SSG--LWD-IVHSP---- 391
                  ++ V G + ++I  +S  ADID    LL+      S G   W+  + SP    
Sbjct: 429 ------DTIAVEGKMGLDIGSLSPGADIDWQSGLLDEIQEFPSVGDPFWEKFLQSPSSPD 482

Query: 392 --VPEDIESTSVDVKTVGNEMQAIENGWNKVQSMDQLTEQMGLLN 434
             + +DI +TS        E +   NGW+K Q+M+ LTEQMG  N
Sbjct: 483 AAMDDDISNTS--------ETKPQINGWDKTQNMEHLTEQMGATN 519

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum peruvianum (taxid: 4082)

>sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/449 (47%), Positives = 295/449 (65%), Gaps = 60/449 (13%)

Query: 7   MGKEFKSQVYHNLI----SKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHG-- 60
           + K FK   + + +    + GFRKVDPDRWEFANEGFLRGQKHLL+SI+RRKPAHG G  
Sbjct: 77  LPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQG 136

Query: 61  HQQSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTM 120
           HQ+S   N Q+SSV ACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQ++D+QLQTM
Sbjct: 137 HQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTM 196

Query: 121 VQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFV---QQQNDSNKRIAEANKKRRIRQEGVA 177
           VQRLQGME R QQ+M+FLAKAVQSP FL+QF+    QQN+SN+RI++ +KKRR +++G+ 
Sbjct: 197 VQRLQGMENRQQQLMSFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRRFKRDGIV 256

Query: 178 EDDHATTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGASSSNTG 237
            ++ + T DGQIVKYQP M+E AK+M ++++KM     E +    D +L+G+G S++   
Sbjct: 257 RNNDSATPDGQIVKYQPPMHEQAKAMFKQLMKM-----EPYKTGDDGFLLGNGTSTTEGT 311

Query: 238 ---STSSRMSGVTLQEVPQTSGPYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQF 294
              ++S+++SG+TL+E+P                     A+E QSSS    + +  +   
Sbjct: 312 EMETSSNQVSGITLKEMP--------------------TASEIQSSSPIETTPENVS--- 348

Query: 295 PDINLLVAAQEATSLPI-SESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDP 353
                  AA EAT   I S  D+ +PD      ++PE+    P ESF+   +     +  
Sbjct: 349 -------AASEATENCIPSPDDLTLPDFTH---MLPENNSEKPPESFMEPNLGGSSPLLD 398

Query: 354 TSLIVNGSVPIEIDDISTDADIDALLESSGLWD--IVHSPVPEDIESTSVDVKTVGNEMQ 411
             L+++ S+  +IDD   D+DID +    GL +  ++ SPVP++++ST VD     NE +
Sbjct: 399 PDLLIDDSLSFDIDDFPMDSDIDPV--DYGLLERLLMSSPVPDNMDSTPVD-----NETE 451

Query: 412 AIENGWNKVQSMDQLTEQMGLLNSETKEV 440
             +NGW+K + MD LT+QMGLL+ ET ++
Sbjct: 452 QEQNGWDKTKHMDNLTQQMGLLSPETLDL 480

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1

 Score =  340 bits (871), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 206/446 (46%), Positives = 277/446 (62%), Gaps = 37/446 (8%)

Query: 7   MGKEFKSQVYHNLI----SKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQ 62
           + K FK   + + +    + GFRKVDPDRWEFANEGFLRGQKHLL++I+RRKP HG+   
Sbjct: 77  LPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQV 136

Query: 63  QSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ 122
           Q  Q  A  + V ACVEVGKFG+EEE+E LKRDKNVLMQELVRLRQQQQ +D QLQT+ +
Sbjct: 137 QQPQLPA--APVPACVEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGK 194

Query: 123 RLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHA 182
           RLQGMEQR QQMM+FLAKA+ SPGFLAQFVQQ  +S +RI  +NKKRR+ ++  + D  +
Sbjct: 195 RLQGMEQRQQQMMSFLAKAMHSPGFLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSES 254

Query: 183 TTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLI------GDGASSSNT 236
            + DGQIVKYQP +NEAAK+MLRKI+K++SS       N DN+L+      G G  S   
Sbjct: 255 ASLDGQIVKYQPMINEAAKAMLRKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDS--- 311

Query: 237 GSTSSRMSGVTLQEVPQTSG-PYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFP 295
            S+S+R SGVTL EVP  SG PY   +SG+ A      +T        +  +     + P
Sbjct: 312 -SSSTRNSGVTLAEVPANSGLPYVATSSGLSA----ICSTSTPQIQCPVVLDNGIPKEVP 366

Query: 296 DINLLVAAQEATSLPISESDVI-MPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPT 354
           +++ + +  +A +   ++ +++  PDL  I  +  E++D IP   F     E  G     
Sbjct: 367 NMSAVPSVPKAVAPGPTDINILEFPDLQDI--VAEENVD-IPGGGF-----EMPGPEGVF 418

Query: 355 SLIVNG--SVPIEIDDISTDAD---IDALLESSGLWDIVHSPVPEDIESTSVDVKTVGNE 409
           SL   G  SVPIE D+I  + D   + A+++S   W+      P  +++  VD   +  +
Sbjct: 419 SLPEEGDDSVPIETDEILYNDDTQKLPAIIDS--FWEQFLVASPLSVDNDEVDSGVLDQK 476

Query: 410 MQAIENGWNKVQSMDQLTEQMGLLNS 435
                NGW K ++M  LTEQMGLL+S
Sbjct: 477 ETQQGNGWTKAENMANLTEQMGLLSS 502

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P41151|HFA1A_ARATH Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2

 Score =  298 bits (764), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 194/456 (42%), Positives = 264/456 (57%), Gaps = 77/456 (16%)

Query: 7   MGKEFKSQVYHNLI----SKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQ 62
           + K FK   + + +    + GFRKVDPDRWEFANEGFLRGQKHLL+ ISRRK   GHG  
Sbjct: 92  LPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSS 151

Query: 63  QSHQQNAQS-------SSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDS 115
            S+ Q+ Q        +++ +CVEVGKFGLEEEVE+LKRDKNVLMQELV+LRQQQQ +D+
Sbjct: 152 SSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDN 211

Query: 116 QLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEG 175
           +LQ +V+ LQ MEQR QQ+M+FLAKAVQ+P FL+QF+Q+Q DSN  + EANKKRR+R++ 
Sbjct: 212 KLQVLVKHLQVMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSNMHVTEANKKRRLREDS 271

Query: 176 VAEDD-----HATTA-DGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGD 229
            A  +     H+  A DGQIVKYQP  N+   SM+  ++K +           D Y   D
Sbjct: 272 TAATESNSHSHSLEASDGQIVKYQPLRND---SMMWNMMKTD-----------DKYPFLD 317

Query: 230 GASSSNTGSTSSRMSGVTLQEV-PQTSGPYAPAASGILADGPSAAATERQSSSRAIASEK 288
           G SS N      ++SGVTLQEV P TSG      S   A  PS        S+       
Sbjct: 318 GFSSPN------QVSGVTLQEVLPITSG-----QSQAYASVPSGQPLSYLPST------- 359

Query: 289 TTTDQFPDINLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRME-N 347
                            +TSLP    D IMP+ +QIP++  ES++  P E+F+ +     
Sbjct: 360 -----------------STSLP----DTIMPETSQIPQLTRESINDFPTENFMDTEKNVP 398

Query: 348 GGYVDPTSLIVNGSVPIEIDDISTDADIDALLESSGLWD--IVHSPVPED---IESTSVD 402
             ++ P+  +  GSVPI+++ I  D +ID L+ +    +  +  SPV  D   +E+ + +
Sbjct: 399 EAFISPSPFLDGGSVPIQLEGIPEDPEIDELMSNFEFLEEYMPESPVFGDATTLENNNNN 458

Query: 403 VKTVGNEMQAIENGWNKVQSMDQLTEQMGLLNSETK 438
                N      N     + MD+L E++GLL SET+
Sbjct: 459 NNNNNNNNNNNNNNNTNGRHMDKLIEELGLLTSETE 494

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|O81821|HFA1B_ARATH Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2

 Score =  281 bits (720), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 202/466 (43%), Positives = 276/466 (59%), Gaps = 87/466 (18%)

Query: 7   MGKEFKSQVYHNLI----SKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQ 62
           + K FK   + + +    + GFRKVDPDRWEFANEGFLRG+K LL+SI RRKP+H   +Q
Sbjct: 67  LPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQ 126

Query: 63  QSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ 122
           Q  Q   QSSSVGACVEVGKFG+EEEVERLKRDKNVLMQELVRLRQQQQA+++QLQ + Q
Sbjct: 127 QQTQ--VQSSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQ 184

Query: 123 RLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQ-QNDSNKRIAEANKKRRI---RQEGVAE 178
           ++Q MEQR QQMM+FLAKAVQSPGFL Q VQQ  ND N++I  +NKKRR+    QE    
Sbjct: 185 KVQVMEQRQQQMMSFLAKAVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQENRG- 243

Query: 179 DDHATTADGQIVKYQPSMNEAAKSMLRKIIKMESS-QLESFNNNHDNYLIGDGASSS--N 235
           D+ A   + QIV+YQPS+NEAA++MLR+ +   +S + ES +NN D++L+GD  SS+  +
Sbjct: 244 DNVANGLNRQIVRYQPSINEAAQNMLRQFLNTSTSPRYESVSNNPDSFLLGDVPSSTSVD 303

Query: 236 TGSTSSRMSGVTLQEVPQTSGPYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFP 295
            G+ SSR+SGVTL E       ++P                         + ++ T+Q P
Sbjct: 304 NGNPSSRVSGVTLAE-------FSP------------------------NTVQSATNQVP 332

Query: 296 DINLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESF------IGSRMENGG 349
           + +L    Q         + ++ P++ Q P     +    PA+S+      +G   ++G 
Sbjct: 333 EASLAHHPQ---------AGLVQPNIGQSP-----AQGAAPADSWSPEFDLVGCETDSGE 378

Query: 350 YVDPTSLIVNGSVPIEIDDISTDAD--IDALLES--------SGLWDIVHS-PVP----- 393
             DP   +++ S   E D IS + +  ++ LLE            W+   S  +P     
Sbjct: 379 CFDPIMAVLDES---EGDAISPEGEGKMNELLEGVPKLPGIQDPFWEQFFSVELPAIADT 435

Query: 394 EDIESTSVDVKTVGNEMQAIENGWNK-VQSMDQLTEQMGLLNSETK 438
           +DI S SV+   +  E +   N W +  Q M  LTEQMGLL+SE +
Sbjct: 436 DDILSGSVENNDLVLEQEP--NEWTRNEQQMKYLTEQMGLLSSEAQ 479

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCW5|HFA1E_ARATH Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2

 Score =  272 bits (695), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 188/458 (41%), Positives = 265/458 (57%), Gaps = 77/458 (16%)

Query: 6   EMGKEFKSQVY-HN--------LISKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPA 56
           E  K+F  + + HN        L + GFRKVDPDRWEFANEGFLRGQK +L+SI RRKPA
Sbjct: 57  EFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPA 116

Query: 57  HGHGHQQSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQ 116
                QQ   Q+   SSVGACVEVGKFGLEEEVERL+RDKNVLMQELVRLRQQQQ ++  
Sbjct: 117 QVQPPQQPQVQH---SSVGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHH 173

Query: 117 LQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGV 176
           LQ + Q++  MEQR QQMM+FLAKAVQSPGFL QF QQ N++N+ I+E+NKKRR+     
Sbjct: 174 LQNVGQKVHVMEQRQQQMMSFLAKAVQSPGFLNQFSQQSNEANQHISESNKKRRLP---- 229

Query: 177 AEDDHATTADG------QIVKYQPSMNEAAKSMLRKIIKMESS-QLESFNNNHDNYLIGD 229
            ED   + + G      QIV+YQ SMN+A  +ML++I +M ++   ES ++N+ ++L+GD
Sbjct: 230 VEDQMNSGSHGVNGLSRQIVRYQSSMNDATNTMLQQIQQMSNAPSHESLSSNNGSFLLGD 289

Query: 230 GASSS--NTGSTSSRMSGVTLQEVPQTSGPYAPAASGILADGPSAAATERQSSSRAIASE 287
             +S+  + GS+S+    VTL +V      + PA                         E
Sbjct: 290 VPNSNISDNGSSSNGSPEVTLADVSSIPAGFYPAMK---------------------YHE 328

Query: 288 KTTTDQFPDINLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMEN 347
              T+Q  +          T+LP S+ D+       +P     +  G  +   +G   +N
Sbjct: 329 PCETNQVME----------TNLPFSQGDL-------LPPTQGAAASGSSSSDLVGCETDN 371

Query: 348 GGYVDPTSLIVNGSVPIEIDDISTDADIDALLE-SSGLWD--IVHSPV---PEDIESTSV 401
           G  +DP   +++G++ +E D ++     + L E     W+  I  SPV    +++ S SV
Sbjct: 372 GECLDPIMAVLDGALELEADTLN-----ELLPEVQDSFWEQFIGESPVIGETDELISGSV 426

Query: 402 DVKTVGNEMQ---AIENGWNKVQSMDQLTEQMGLLNSE 436
           + + +  +++    + N W+K Q M+ LTEQMGLL S+
Sbjct: 427 ENELILEQLELQSTLSNVWSKNQQMNHLTEQMGLLTSD 464

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q6VBB2|HFA2B_ORYSJ Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 120/175 (68%), Gaps = 11/175 (6%)

Query: 13  SQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSS 72
           S     L + GFRKVDPDRWEFANE FLRGQ+HLL++I RRKP     H  S+QQ     
Sbjct: 102 SSFVRQLNTYGFRKVDPDRWEFANENFLRGQRHLLKNIKRRKPP---SHTASNQQ----- 153

Query: 73  SVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQ 132
           S+G  +EVG FG + E++RLKRDK +LM E+V+LRQ+QQ + + L+ M  RLQG EQR Q
Sbjct: 154 SLGPYLEVGHFGYDAEIDRLKRDKQLLMAEVVKLRQEQQNTKANLKAMEDRLQGTEQRQQ 213

Query: 133 QMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEA-NKKRRIR-QEGVAEDDHATTA 185
           QMMAFLA+ +++P FL Q +  QN+  K + +A +KKRR R  +G   DD  T++
Sbjct: 214 QMMAFLARVMKNPEFLKQLM-SQNEMRKELQDAISKKRRRRIDQGPEVDDVGTSS 267

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H7Y6|HFA2D_ORYSJ Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 113/161 (70%), Gaps = 11/161 (6%)

Query: 13  SQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKP-AHGHGHQQSHQQNAQS 71
           S     L + GFRK+DPDRWEFAN+GFLRGQ+HLL+ I RR+P ++  G QQ+       
Sbjct: 87  SSFVRQLNTYGFRKIDPDRWEFANDGFLRGQRHLLKMIKRRRPLSYLPGSQQA------- 139

Query: 72  SSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRH 131
             +G C+EVG+FGL+EE++RLKRDKN+L+ E+V+LR +QQ++ + ++ M +RLQ  EQ+ 
Sbjct: 140 --LGTCLEVGQFGLDEEIDRLKRDKNILLAEVVKLRHKQQSTKANMRAMEERLQHAEQKQ 197

Query: 132 QQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIR 172
            QMM FLA+A+Q+P F  Q + QQ D  K + +   K+R R
Sbjct: 198 VQMMGFLARAMQNPDFFHQLIHQQ-DKMKGLEDTFSKKRTR 237

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6F388|HFA2E_ORYSJ Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1

 Score =  162 bits (409), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 87/174 (50%), Positives = 115/174 (66%), Gaps = 11/174 (6%)

Query: 13  SQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSS 72
           S     L + GFRKVDPD+WEFANEGFLRGQKHLL+SI RRKP +    QQS        
Sbjct: 88  SSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSSPSQQS-------- 139

Query: 73  SVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQ 132
            +G+ +EVG FG E E+++LKRDK++LM E+V+LRQ+QQ + S LQ M Q+LQG EQ+ Q
Sbjct: 140 -LGSFLEVGHFGYEGEIDQLKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKLQGTEQKQQ 198

Query: 133 QMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAE-ANKKRRIRQEGVAEDDHATTA 185
            MMAFL++ + +P F+ Q    Q++  K + E  +KKRR R +   E D   T 
Sbjct: 199 HMMAFLSRVMHNPEFIRQLF-SQSEMRKELEEFVSKKRRRRIDQGPELDSMGTG 251

Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
347369340	482	heat shock transcription factor [Populus	0.961	0.877	0.625	1e-147
255573449	510	Heat shock factor protein HSF8, putative	0.954	0.823	0.608	1e-147
224138180	484	predicted protein [Populus trichocarpa]	0.965	0.878	0.617	1e-146
224071375	481	predicted protein [Populus trichocarpa]	0.959	0.877	0.621	1e-142
147767343	495	hypothetical protein VITISV_017888 [Viti	0.934	0.830	0.603	1e-142
359474544	496	PREDICTED: heat shock factor protein HSF	0.934	0.828	0.600	1e-141
351722667	510	heat shock factor protein hsf8-related [	0.979	0.845	0.581	1e-141
357485115	502	Heat stress transcription factor A-1d [M	0.952	0.834	0.587	1e-136
115521215	502	heat shock transcription factor 1 [Medic	0.952	0.834	0.582	1e-133
115521211	502	heat shock transcription factor 1 [Medic	0.952	0.834	0.582	1e-133

>gi|347369340|gb|AEO91550.1| heat shock transcription factor [Populus simonii]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 276/441 (62%), Positives = 343/441 (77%), Gaps = 18/441 (4%)

Query: 7   MGKEFKSQVYHNLI----SKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQ 62
           + K FK   + + +    + GFRKVDPDRWEFANEGFLRGQKHLLR ISRRKPAHGH +Q
Sbjct: 50  LPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRIISRRKPAHGHANQ 109

Query: 63  QSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ 122
           Q  Q + Q+SSV ACVEVGKFGL+EEVERLKRDKNVLMQELVRLRQQQQ++DSQLQTMVQ
Sbjct: 110 QPQQPHGQNSSVAACVEVGKFGLKEEVERLKRDKNVLMQELVRLRQQQQSTDSQLQTMVQ 169

Query: 123 RLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHA 182
           RLQGMEQR QQMM+FLAKA+ SPGFLAQFVQQQND+N+RI EANKKRR++QE V E++ +
Sbjct: 170 RLQGMEQRQQQMMSFLAKAMNSPGFLAQFVQQQNDNNRRITEANKKRRLKQEDVPENEGS 229

Query: 183 TTADGQIVKYQPSMNEAAKSMLRKIIKME-SSQLESFNNNHDNYLIGDGASSSNTGSTSS 241
            + DGQIVKYQP MNEAA++MLR+I+KM+ SS+LES++NN           + ++GS+SS
Sbjct: 230 GSHDGQIVKYQPLMNEAAQAMLRQIMKMDASSKLESYDNN---------LGAKDSGSSSS 280

Query: 242 RMSGVTLQEVPQTSGPYA--PAASGILADGPSAAATERQSSSRAIASEKTTTDQFPDINL 299
             SGVTLQEV  TSG  A  PAA GI   GPSA  +E QSS +  +SEK T  QFPDI++
Sbjct: 281 HTSGVTLQEVLPTSGQSAHIPAAFGISRQGPSAPISEIQSSLQIASSEKVTASQFPDISM 340

Query: 300 LVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLIVN 359
           LV AQ ATS+PI ++DVIMP ++Q+PE++PE++  I  E ++     N G++DP SL +N
Sbjct: 341 LVGAQGATSIPIPQADVIMPHVSQMPEMVPENVADITCEDYMEPETCNDGFIDPASLGIN 400

Query: 360 GSVPIEIDDISTDADIDALLESSGLWD--IVHSPVPEDIESTSVDVKTVGNEMQAIENGW 417
           G++PI+ID+IS D DIDALL++S  WD  +V SP PEDIES+SV+ K  GN++Q   NGW
Sbjct: 401 GTIPIDIDNISPDPDIDALLDNSSFWDDLLVQSPDPEDIESSSVEAKANGNDVQPNANGW 460

Query: 418 NKVQSMDQLTEQMGLLNSETK 438
           +K Q +DQLTEQM LL S+ K
Sbjct: 461 DKAQHVDQLTEQMELLTSDKK 481

Source: Populus simonii

Species: Populus simonii

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573449|ref|XP_002527650.1| Heat shock factor protein HSF8, putative [Ricinus communis] gi|223532955|gb|EEF34721.1| Heat shock factor protein HSF8, putative [Ricinus communis]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 270/444 (60%), Positives = 341/444 (76%), Gaps = 24/444 (5%)

Query: 7   MGKEFKSQVYHNLI----SKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQ 62
           + K FK   + + +    + GFRKVDPDRWEFANEGFLRGQKHLL+SISRRKPAHGHGHQ
Sbjct: 81  LPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHGHQ 140

Query: 63  QSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ 122
           Q+ Q + QSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQ +DSQLQTMVQ
Sbjct: 141 QAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDSQLQTMVQ 200

Query: 123 RLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHA 182
           RLQGMEQR QQMM+FLAKA+QSPGF AQFVQQQN+SN+RI EANKKRR++Q+G+ E++ +
Sbjct: 201 RLQGMEQRQQQMMSFLAKAMQSPGFFAQFVQQQNESNRRITEANKKRRLKQDGIPENESS 260

Query: 183 TTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGASSSN---TGST 239
           T+ DGQIVKYQP +NEAAK++LR+I+K  +++  S+NN  + +LIG  + +S+   +G +
Sbjct: 261 TSPDGQIVKYQPLVNEAAKAILRQIMK-SNAEATSYNNGLEGFLIGSDSPTSSRMESGGS 319

Query: 240 SSRMSGVTLQEVPQTSG--PYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFPDI 297
           S+R+SGVTLQEVP TSG   Y PAASG  A GP+ + +E +SS     S+K T  QFPDI
Sbjct: 320 SNRISGVTLQEVPPTSGQSTYLPAASGQTAHGPTTSISEMKSSLCIDGSKKLTASQFPDI 379

Query: 298 NLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLI 357
           + LV ++EA S+ I +SDV+MP L+QIP++ PES   I  E ++     +  ++D TSL 
Sbjct: 380 SALVGSEEAPSISIPQSDVVMPPLSQIPDMAPES---IVDEDYMQPESVDDEFMDLTSLG 436

Query: 358 VNGSVPIEIDDISTDADIDALLESSGLWD-IVHSPVPEDIESTSVDVKTVGNEMQAIENG 416
           +           + D DID LLE+S  WD +V SPVPEDIES+SVDV+T  N+++ ++NG
Sbjct: 437 IG----------NPDTDIDILLENSSFWDELVQSPVPEDIESSSVDVQTKENDVRPMDNG 486

Query: 417 WNKVQSMDQLTEQMGLLNSETKEV 440
           WN  Q MDQLTEQMGLL SETK++
Sbjct: 487 WNNTQRMDQLTEQMGLLTSETKKL 510

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138180|ref|XP_002326538.1| predicted protein [Populus trichocarpa] gi|222833860|gb|EEE72337.1| predicted protein [Populus trichocarpa]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 274/444 (61%), Positives = 349/444 (78%), Gaps = 19/444 (4%)

Query: 7   MGKEFKSQVYHNLI----SKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQ 62
           + K FK   + + +    + GFRKVDPDRWEFANEGFLRGQKHLLR+ISRRKPAHGH +Q
Sbjct: 50  LPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRTISRRKPAHGHTNQ 109

Query: 63  QSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ 122
           Q  Q   Q+S+VGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQ++DSQLQTMVQ
Sbjct: 110 QPQQARGQNSTVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDSQLQTMVQ 169

Query: 123 RLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHA 182
           RLQGMEQR QQMM+FLAKA+QSPGFLAQFVQQQN+S++RI EANKKRR++ E V+E++ +
Sbjct: 170 RLQGMEQRQQQMMSFLAKAMQSPGFLAQFVQQQNESSRRITEANKKRRLKPEDVSENEGS 229

Query: 183 TTADGQIVKYQPSMNEAAKSMLRKIIKMES-SQLESFNNNHDNYLIGDGA---SSSNTGS 238
           +  DGQIVKYQP MNEAAK+MLR+++KM++ S+LES++ N D +LIG+G+   S+ ++GS
Sbjct: 230 SAPDGQIVKYQPQMNEAAKAMLRQVMKMDAPSRLESYDTNLDGFLIGNGSPSSSAKDSGS 289

Query: 239 TSSRMSGVTLQEVPQTSGPYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFPDIN 298
           +SSRMSGVTLQEV        PAASGI   GP AA +E QSS    +SEK T  QFP+ +
Sbjct: 290 SSSRMSGVTLQEV--------PAASGISGHGPMAAISEIQSSPHIASSEKATASQFPE-S 340

Query: 299 LLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLIV 358
           +LV  Q A S+PI ++D+IMP ++Q PE++PE +  IP E ++     +  ++DP SL +
Sbjct: 341 ILVGGQGAPSIPIPQADIIMPQVSQKPEMVPEIIADIPGEDYMEPETSSDVFLDPASLGI 400

Query: 359 NGSVPIEIDDISTDADIDALLESSGLWD--IVHSPVPEDIESTSVDVKTVGNEMQAIENG 416
           N ++PI+ID+IS D DIDALL++S  WD  +  SPVPEDIES+SV+ K  GN++  I NG
Sbjct: 401 NDTIPIDIDNISPDPDIDALLDNSSFWDDLLAQSPVPEDIESSSVEGKANGNDVHQIING 460

Query: 417 WNKVQSMDQLTEQMGLLNSETKEV 440
           W+K Q MDQLTEQMGLL+S+ K++
Sbjct: 461 WDKAQHMDQLTEQMGLLSSDRKQL 484

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071375|ref|XP_002303429.1| predicted protein [Populus trichocarpa] gi|222840861|gb|EEE78408.1| predicted protein [Populus trichocarpa]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/441 (62%), Positives = 339/441 (76%), Gaps = 19/441 (4%)

Query: 7   MGKEFKSQVYHNLI----SKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQ 62
           + K FK   + + +    + GFRKVDPDRWEFANEGFLRGQKHLLR ISRRKPAHGH +Q
Sbjct: 50  LPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRIISRRKPAHGHANQ 109

Query: 63  QSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ 122
           Q  Q + Q+SSV ACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQ++DSQLQTMVQ
Sbjct: 110 QPQQPHGQNSSVAACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDSQLQTMVQ 169

Query: 123 RLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHA 182
           RLQGMEQR QQMM+FLAKA+ SPGFLAQFVQQQND+N+RI EANKKRR++QE V E++ +
Sbjct: 170 RLQGMEQRQQQMMSFLAKAMNSPGFLAQFVQQQNDNNRRITEANKKRRLKQEDVPENEGS 229

Query: 183 TTADGQIVKYQPSMNEAAKSMLRKIIKME-SSQLESFNNNHDNYLIGDGASSSNTGSTSS 241
            + DGQIVKYQP MNEAA++MLR+I+KM+ SS+LES++NN           + ++GS+SS
Sbjct: 230 GSHDGQIVKYQPLMNEAAQAMLRQIMKMDASSKLESYDNN---------LGAKDSGSSSS 280

Query: 242 RMSGVTLQEVPQTSGPYA--PAASGILADGPSAAATERQSSSRAIASEKTTTDQFPDINL 299
             SGVTLQEV  TSG  A  PAA GI   GPSA  +E QSS +  +SEK T  QFPDI++
Sbjct: 281 HTSGVTLQEVLPTSGQSAHIPAAFGISRQGPSAPISEIQSSLQIASSEKVTASQFPDISM 340

Query: 300 LVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLIVN 359
            V AQ ATS+PI ++DVIMP ++Q+ E++PE++  IP E ++     N G++D  SL +N
Sbjct: 341 PVGAQGATSIPIPQADVIMPHVSQMLEMVPENVADIPCEDYMEPETCNDGFIDLASLGIN 400

Query: 360 GSVPIEIDDISTDADIDALLESSGLWD--IVHSPVPEDIESTSVDVKTVGNEMQAIENGW 417
           G +PI+ID+IS D DIDALL++S  WD  +V SP  EDIES+SV+ K  GN++Q   NGW
Sbjct: 401 G-IPIDIDNISPDPDIDALLDNSSFWDDLLVQSPEHEDIESSSVEGKANGNDVQPNANGW 459

Query: 418 NKVQSMDQLTEQMGLLNSETK 438
           +K Q +DQLTEQM LL S+ K
Sbjct: 460 DKAQHVDQLTEQMELLTSDKK 480

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767343|emb|CAN71266.1| hypothetical protein VITISV_017888 [Vitis vinifera]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 269/446 (60%), Positives = 339/446 (76%), Gaps = 35/446 (7%)

Query: 7   MGKEFKSQVYHNLI----SKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQ 62
           + K FK   + + +    + GFRKVDPDRWEFANEGFLRGQKHLLRSI+RRKPAHGH  Q
Sbjct: 73  LPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSINRRKPAHGHNLQ 132

Query: 63  QSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ 122
           Q  Q ++Q SSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQ +D+QLQTMVQ
Sbjct: 133 QPQQSHSQGSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQ 192

Query: 123 RLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDH- 181
           RLQGMEQR QQMM+FLAKAVQSPGFLAQFVQQQN+SN+RI EANKKRR+++E +AE +H 
Sbjct: 193 RLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESNRRITEANKKRRLKREDIAEGEHS 252

Query: 182 ATTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGASSSN---TGS 238
           A  +DGQIVKYQP MNEA K+MLR+++KM++S   +F+N+ DN+LIGD +SSSN    G 
Sbjct: 253 AAPSDGQIVKYQPLMNEATKAMLRQMVKMDTS---AFSNDSDNFLIGDVSSSSNGVEKGG 309

Query: 239 TSSRMSGVTLQEVPQTSGPYAPAASGILA-DGPSAAATERQSSSRAIASEKTTTDQFPDI 297
           +S+ +SGVTLQEVP TS    P ASG+ + D PSA  +E QS               PDI
Sbjct: 310 SSTCVSGVTLQEVPPTS---LPVASGVPSHDPPSAPISEIQSP--------------PDI 352

Query: 298 NLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLI 357
             LV AQEA  + I+  DVI+P+L+QIPE++P+S+  I  + ++G +  N  ++DP SL 
Sbjct: 353 CALVGAQEAVPISIALPDVILPELSQIPEMLPKSIVDIHKDDYVGPQSGNVEFMDPISLG 412

Query: 358 VNGSVPIEIDDISTDADIDALLE-SSGLWD--IVHSPVPEDIESTSVDVKTVGNEMQAIE 414
           ++G++PI+ID+IS D DIDALL+ SS  W+  +V +   +++EST ++  T GNEMQ  E
Sbjct: 413 IDGAMPIDIDNISADPDIDALLDASSNFWEDLLVDN---DEVESTPLEDTTKGNEMQPSE 469

Query: 415 NGWNKVQSMDQLTEQMGLLNSETKEV 440
           NGW+KVQ M +LTEQMGLL S+TK +
Sbjct: 470 NGWDKVQHMAKLTEQMGLLTSDTKRI 495

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474544|ref|XP_003631489.1| PREDICTED: heat shock factor protein HSF8-like [Vitis vinifera]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/446 (60%), Positives = 337/446 (75%), Gaps = 35/446 (7%)

Query: 7   MGKEFKSQVYHNLI----SKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQ 62
           + K FK   + + +    + GFRKVDPDRWEFANEGFLRGQKHLLRSI+RRKPAHGH  Q
Sbjct: 74  LPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSINRRKPAHGHNLQ 133

Query: 63  QSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ 122
           Q  Q ++Q SSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQ +D+QLQTMVQ
Sbjct: 134 QPQQSHSQGSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQ 193

Query: 123 RLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDH- 181
           RLQGMEQR QQMM+FLAKAVQSPGFLAQFVQQQN+SN+RI EANKKRR+++E  AE +H 
Sbjct: 194 RLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESNRRITEANKKRRLKREDTAEGEHS 253

Query: 182 ATTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGASSSN---TGS 238
           A  +DGQIVKYQP MNEA K+MLR+++KM++S   +F+N+ DN+LIGD +SSSN    G 
Sbjct: 254 AAPSDGQIVKYQPLMNEATKAMLRQMVKMDTS---AFSNDSDNFLIGDVSSSSNGVEKGG 310

Query: 239 TSSRMSGVTLQEVPQTSGPYAPAASGILA-DGPSAAATERQSSSRAIASEKTTTDQFPDI 297
           +S+ +SGVTLQEVP TS    P ASG+ + D PSA  +E QS               PDI
Sbjct: 311 SSTCVSGVTLQEVPPTS---LPVASGVPSHDPPSAPISEIQSP--------------PDI 353

Query: 298 NLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLI 357
             LV AQEA  + I+  DVI+P+L+QIPE++P+S+  I  + ++G +  N  ++DP SL 
Sbjct: 354 CALVGAQEAVPISIALPDVILPELSQIPEMLPKSIVDIHKDDYVGPQSGNVEFMDPISLG 413

Query: 358 VNGSVPIEIDDISTDADIDALLE-SSGLWD--IVHSPVPEDIESTSVDVKTVGNEMQAIE 414
           ++G++PI+ID+IS D DIDALL+ SS  W+  +V +   +++EST ++  T GNEMQ  E
Sbjct: 414 IDGAMPIDIDNISADPDIDALLDASSNFWEDLLVDN---DEVESTPLEDTTKGNEMQPSE 470

Query: 415 NGWNKVQSMDQLTEQMGLLNSETKEV 440
           NGW+K Q M +LTEQMGLL S+TK +
Sbjct: 471 NGWDKAQHMAKLTEQMGLLTSDTKRI 496

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722667|ref|NP_001236740.1| heat shock factor protein hsf8-related [Glycine max] gi|42415865|gb|AAS15800.1| heat shock factor protein hsf8-related [Glycine max]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 258/444 (58%), Positives = 341/444 (76%), Gaps = 13/444 (2%)

Query: 7   MGKEFKSQVYHNLI----SKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQ 62
           + K FK   + + +    + GFRKVDPDRWEFANEGFLRGQKHLL++I+RRKPAHGH +Q
Sbjct: 70  LPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTITRRKPAHGH-NQ 128

Query: 63  QSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ 122
           Q+ Q + QSSSVGACVEVGKFGLEEEVE LKRDKNVLMQELVRLRQQQQA+D+QLQ+MVQ
Sbjct: 129 QAQQAHGQSSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQATDNQLQSMVQ 188

Query: 123 RLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHA 182
           RLQGMEQR QQMM+FLAKAVQSPGFLAQFVQQQN+S++RI EANKKRR++QEG+ E +H 
Sbjct: 189 RLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESSRRITEANKKRRLKQEGIGEMEHT 248

Query: 183 TTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGASSS---NTGST 239
             +DGQIVKYQP +NEAAK+MLR+++K+++S+LESF+NN DNYLIGD +SSS   + G++
Sbjct: 249 AASDGQIVKYQPLINEAAKAMLRQMMKLDTSRLESFSNNADNYLIGDHSSSSGATDRGNS 308

Query: 240 SSRMSGVTLQEVPQTS--GPYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFPDI 297
            SR SGVTLQ VP T+    + P+A+GI  D PS   +E  S+ + +A ++ T  Q+ ++
Sbjct: 309 LSRTSGVTLQVVPLTTIQSSHIPSATGI-GDDPSTGKSEILSTPQVVACDEVTKAQYSNV 367

Query: 298 NLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLI 357
           N+ V    A ++P +++D IM DL+ IP+I+  ++  IP E+++       GY+DPTS  
Sbjct: 368 NVSVGESNAPAIPATQTDEIMRDLSTIPDIVAGNILDIPQENYMAPETGGEGYMDPTSFG 427

Query: 358 VNGSVPIEIDDISTDADIDALLESSGLW-DIVHSPVPEDIESTSVDVKTVGNEMQAIENG 416
           VN S+PI+ D IS +ADID LL +   W DI+ +PV E+I++   +V    NE+Q +ENG
Sbjct: 428 VNVSLPIDFDSISPEADIDDLLNNPHFWDDILRTPVSEEIDTNDAEVFK-ENEVQPMENG 486

Query: 417 WNKVQSMDQLTEQMGLLNSETKEV 440
            ++ Q+MDQLTEQMGLL+S+ K +
Sbjct: 487 LDESQNMDQLTEQMGLLSSDAKRI 510

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485115|ref|XP_003612845.1| Heat stress transcription factor A-1d [Medicago truncatula] gi|355514180|gb|AES95803.1| Heat stress transcription factor A-1d [Medicago truncatula]

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/446 (58%), Positives = 328/446 (73%), Gaps = 27/446 (6%)

Query: 7   MGKEFKSQVYHNLI----SKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQ 62
           + K FK   + + +    + GFRKVDPDRWEFANEGFLRGQK LL+SISRRKPAHGH  Q
Sbjct: 72  LPKFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKPAHGHTQQ 131

Query: 63  QSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ 122
           Q+ Q + QSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQ +DSQLQTMVQ
Sbjct: 132 QAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDSQLQTMVQ 191

Query: 123 RLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAE-DDH 181
           RLQGMEQR QQMM+FLAKAVQSPGF AQFVQQQNDSN+RI E NKKRR++Q+G+AE  + 
Sbjct: 192 RLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNDSNRRITEVNKKRRLKQDGIAETTEQ 251

Query: 182 ATTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGASSS---NTGS 238
           AT  DGQIVKYQP MN+ AK+MLRKI+K ++ ++ESFN N DNYLIGDG S S   ++ S
Sbjct: 252 ATPPDGQIVKYQPMMNDTAKAMLRKIMKWDTPRVESFNKNPDNYLIGDGTSPSSAMDSNS 311

Query: 239 TSSRMSGVTLQEVPQTS--GPYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFPD 296
           ++S  SGVTLQEVP +S      P A+G     PS+   E  S  +A AS     D    
Sbjct: 312 STSWNSGVTLQEVPPSSVQSTQFPVATGTQGHIPSSEKPEILSVPQAAASANVMKD---- 367

Query: 297 INLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSL 356
                    A+++P S++DVIMPD+  +PEI+P+S+  IP   ++    ++ G++DP+SL
Sbjct: 368 -----GTHAASTIPTSQADVIMPDIPSVPEIVPKSILDIPENDYMAPETDD-GFMDPSSL 421

Query: 357 IVNGSVPIEIDDISTDADIDALLESSGLW-DIVHSPVPEDIESTSVDVKTVGNEMQAIEN 415
              GS+PI++D +S  ADID LL SS +W D++ +P+PED E+ ++D  + GNE+Q  EN
Sbjct: 422 ---GSLPIDLDCLSPGADIDDLL-SSSIWDDLLQTPIPEDFEA-NIDEISRGNEVQPTEN 476

Query: 416 GW-NKVQSMDQLTEQMGLLNSETKEV 440
           GW N  Q +DQLTEQMGLL+S+ K +
Sbjct: 477 GWDNNTQPLDQLTEQMGLLSSDAKRI 502

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115521215|gb|ABJ09073.1| heat shock transcription factor 1 [Medicago sativa] gi|115521221|gb|ABJ09076.1| heat shock transcription factor 1 [Medicago sativa]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/446 (58%), Positives = 329/446 (73%), Gaps = 27/446 (6%)

Query: 7   MGKEFKSQVYHNLI----SKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQ 62
           + K FK   + + +    + GFRKVDPDRWEFANEGFLRGQK LL+SISRRKPAHGH  Q
Sbjct: 72  LPKFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKPAHGHTQQ 131

Query: 63  QSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ 122
           Q+ Q + QSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQ +D QLQTMVQ
Sbjct: 132 QAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDGQLQTMVQ 191

Query: 123 RLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAE-DDH 181
           RLQGMEQR QQMM+FLAKAVQSPGF AQFVQQQNDSN+RI E NKKRR++Q+G+AE  + 
Sbjct: 192 RLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNDSNRRITEVNKKRRLKQDGIAETTEQ 251

Query: 182 ATTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGA---SSSNTGS 238
           AT  DGQIVKYQP MNE AK+MLRKI+K ++ ++ESFN N DNYLIGDG    S+ ++ S
Sbjct: 252 ATPPDGQIVKYQPMMNETAKAMLRKIMKWDTPRVESFNKNPDNYLIGDGTSPSSAMDSSS 311

Query: 239 TSSRMSGVTLQEVPQTS--GPYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFPD 296
           ++S  SGVTLQEVP +S      P ++G     PSA   E  S  +A AS     D    
Sbjct: 312 STSWNSGVTLQEVPPSSVQSTQIPVSTGTQGHIPSAEKPEILSVPQAAASANVMKD---- 367

Query: 297 INLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSL 356
                    A+++P S++DVIMPD+  +PEI+P+S+  IP ++++    ++ G++DP+SL
Sbjct: 368 -----GTHAASTIPTSQADVIMPDIPSVPEIVPKSILDIPEDNYMAPETDD-GFMDPSSL 421

Query: 357 IVNGSVPIEIDDISTDADIDALLESSGLW-DIVHSPVPEDIESTSVDVKTVGNEMQAIEN 415
              GS+PI++D +S  ADID LL S+ +W D++ +P+PED E+ ++D  + GNE+Q  EN
Sbjct: 422 ---GSLPIDLDCLSPGADIDDLL-SNSIWDDLLQTPIPEDFEA-NIDEISRGNEVQPTEN 476

Query: 416 GW-NKVQSMDQLTEQMGLLNSETKEV 440
           GW N  Q +DQLTEQMGLL+S+ K +
Sbjct: 477 GWDNNTQPLDQLTEQMGLLSSDAKRI 502

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115521211|gb|ABJ09071.1| heat shock transcription factor 1 [Medicago sativa]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/446 (58%), Positives = 329/446 (73%), Gaps = 27/446 (6%)

Query: 7   MGKEFKSQVYHNLI----SKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQ 62
           + K FK   + + +    + GFRKVDPDRWEFANEGFLRGQK LL+SISRRKPAHGH  Q
Sbjct: 72  LPKFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKPAHGHTQQ 131

Query: 63  QSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ 122
           Q+ Q + QSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQ +D QLQTMVQ
Sbjct: 132 QAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDGQLQTMVQ 191

Query: 123 RLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAE-DDH 181
           RLQGMEQR QQMM+FLAKAVQSPGF AQFVQQQNDSN+RI E NKKRR++Q+G+AE  + 
Sbjct: 192 RLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNDSNRRITEVNKKRRLKQDGIAETTEQ 251

Query: 182 ATTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGA---SSSNTGS 238
           AT  DGQIVKYQP MNE AK+MLRKI+K ++ ++ESFN N DNYLIGDG    S+ ++ S
Sbjct: 252 ATPPDGQIVKYQPMMNETAKAMLRKIMKWDTPRVESFNKNPDNYLIGDGTSPSSAMDSSS 311

Query: 239 TSSRMSGVTLQEVPQTS--GPYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFPD 296
           ++S  SGVTLQEVP +S      P ++G     PSA   E  S  +A AS     D    
Sbjct: 312 STSWNSGVTLQEVPPSSVQSTQIPVSTGTQGHIPSAEKPEILSVPQAAASANVMKD---- 367

Query: 297 INLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSL 356
                    A+++P S++DVIMPD+  +PEI+P+S+  IP ++++    ++ G++DP+SL
Sbjct: 368 -----GTHAASTIPTSQADVIMPDIPSVPEIVPKSILDIPEDNYMAPETDD-GFMDPSSL 421

Query: 357 IVNGSVPIEIDDISTDADIDALLESSGLW-DIVHSPVPEDIESTSVDVKTVGNEMQAIEN 415
              GS+PI++D +S  ADID LL S+ +W D++ +P+PED E+ ++D  + GNE+Q  EN
Sbjct: 422 ---GSLPIDLDCLSPGADIDDLL-SNSIWDDLLQTPIPEDFEA-NIDEISRGNEVQPTEN 476

Query: 416 GW-NKVQSMDQLTEQMGLLNSETKEV 440
           GW N  Q +DQLTEQMGLL+S+ K +
Sbjct: 477 GWDNNTQPLDQLTEQMGLLSSDAKRI 502

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
TAIR|locus:2075447	468	HSFA1E "AT3G02990" [Arabidopsi	0.559	0.525	0.472	1.3e-59
TAIR|locus:2028326	485	HSFA1D "AT1G32330" [Arabidopsi	0.731	0.663	0.422	2.2e-59
TAIR|locus:2149050	481	HSF3 "AT5G16820" [Arabidopsis	0.715	0.654	0.436	3.8e-53
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.709	0.630	0.398	1.4e-48
TAIR|locus:2057371	345	HSFA2 "AT2G26150" [Arabidopsis	0.345	0.440	0.425	4.2e-30
TAIR|locus:2094339	406	HSFA6B "AT3G22830" [Arabidopsi	0.361	0.391	0.431	7.9e-30
TAIR|locus:2200171	374	HSFA8 "AT1G67970" [Arabidopsis	0.418	0.491	0.34	4.9e-20
TAIR|locus:2144603	412	HSFA3 "AT5G03720" [Arabidopsis	0.381	0.407	0.342	1.5e-18
TAIR|locus:2091762	330	HSFC1 "AT3G24520" [Arabidopsis	0.363	0.484	0.328	5e-17
TAIR|locus:2083690	272	HSFA7A "AT3G51910" [Arabidopsi	0.184	0.297	0.370	5.5e-17

TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
 Identities = 120/254 (47%), Positives = 151/254 (59%)

Query:    13 SQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXXXXXXXXXX 72
             S     L + GFRKVDPDRWEFANEGFLRGQK +L+SI RRKP                 
Sbjct:    73 SSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSS-- 130

Query:    73 XVGACVEVGKFGLEEEVERLKRDKNVLMQELVXXXXXXXXXXXXXXTMVQRLQGMEQRHQ 132
              VGACVEVGKFGLEEEVERL+RDKNVLMQELV               + Q++  MEQR Q
Sbjct:   131 -VGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQ 189

Query:   133 QMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEG-VAEDDHATTA-DGQIV 190
             QMM+FLAKAVQSPGFL QF QQ N++N+ I+E+NKKRR+  E  +    H       QIV
Sbjct:   190 QMMSFLAKAVQSPGFLNQFSQQSNEANQHISESNKKRRLPVEDQMNSGSHGVNGLSRQIV 249

Query:   191 KYQPSMNEAAKSMLRKIIKMESSQL-ESFNNNHDNYLIXXXXXXXXXXXXXXXXXX--VT 247
             +YQ SMN+A  +ML++I +M ++   ES ++N+ ++L+                    VT
Sbjct:   250 RYQSSMNDATNTMLQQIQQMSNAPSHESLSSNNGSFLLGDVPNSNISDNGSSSNGSPEVT 309

Query:   248 LQEVPQTSGPYAPA 261
             L +V      + PA
Sbjct:   310 LADVSSIPAGFYPA 323

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 149/353 (42%), Positives = 198/353 (56%)

Query:     9 KEFKSQVYHNLISK----GFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXX 64
             K FK   + + + +    GFRKVDPDRWEFANEGFLRGQKHLL+SI+RRKP         
Sbjct:    79 KNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQ 138

Query:    65 XXXXXXX--XXVGACVEVGKFGLEEEVERLKRDKNVLMQELVXXXXXXXXXXXXXXTMVQ 122
                        V ACVEVGKFGLEEEVERLKRDKNVLMQELV              TMVQ
Sbjct:   139 RSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQ 198

Query:   123 RLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQN---DSNKRIAEANKKRRIRQEGVAED 179
             RLQGME R QQ+M+FLAKAVQSP FL+QF+QQQN   +SN+RI++ +KKRR +++G+  +
Sbjct:   199 RLQGMENRQQQLMSFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRRFKRDGIVRN 258

Query:   180 DHATTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIXXXXXXXXXXXX 239
             + + T DGQIVKYQP M+E AK+M ++++KME      +    D +L+            
Sbjct:   259 NDSATPDGQIVKYQPPMHEQAKAMFKQLMKMEP-----YKTGDDGFLLGNGTSTTEGTEM 313

Query:   240 XXXXXXV---TLQEVPQTSGPYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFPD 296
                   V   TL+E+P  S   + +      +  SAA+   +++   I S    T   PD
Sbjct:   314 ETSSNQVSGITLKEMPTASEIQSSSPIETTPENVSAAS---EATENCIPSPDDLT--LPD 368

Query:   297 INLLVAAQEATSLPIS--------ESDVIMPDLAQIPEIMPESMDGIPAESFI 341
                ++    +   P S         S ++ PDL  I + +   +D  P +S I
Sbjct:   369 FTHMLPENNSEKPPESFMEPNLGGSSPLLDPDLL-IDDSLSFDIDDFPMDSDI 420

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 150/344 (43%), Positives = 190/344 (55%)

Query:    13 SQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXXXXXXXXXX 72
             S     L + GFRKVDPDRWEFANEGFLRG+K LL+SI RRKP                 
Sbjct:    77 SSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSS- 135

Query:    73 XVGACVEVGKFGLEEEVERLKRDKNVLMQELVXXXXXXXXXXXXXXTMVQRLQGMEQRHQ 132
              VGACVEVGKFG+EEEVERLKRDKNVLMQELV               + Q++Q MEQR Q
Sbjct:   136 -VGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQ 194

Query:   133 QMMAFLAKAVQSPGFLAQFVQQQN-DSNKRIAEANKKRRI---RQEGVAEDDHATTADGQ 188
             QMM+FLAKAVQSPGFL Q VQQ N D N++I  +NKKRR+    QE    D+ A   + Q
Sbjct:   195 QMMSFLAKAVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQENRG-DNVANGLNRQ 253

Query:   189 IVKYQPSMNEAAKSMLRKIIKMESS-QLESFNNNHDNYLIXXXXXXXXXXXX--XXXXXX 245
             IV+YQPS+NEAA++MLR+ +   +S + ES +NN D++L+                    
Sbjct:   254 IVRYQPSINEAAQNMLRQFLNTSTSPRYESVSNNPDSFLLGDVPSSTSVDNGNPSSRVSG 313

Query:   246 VTLQEV-P---QTSGPYAPAASGILADGPSAAATER---QSSSRAIASEKTTTDQFPDIN 298
             VTL E  P   Q++    P AS  LA  P A   +    QS ++  A   + + +F  + 
Sbjct:   314 VTLAEFSPNTVQSATNQVPEAS--LAHHPQAGLVQPNIGQSPAQGAAPADSWSPEFDLVG 371

Query:   299 LLVAAQEATSLPI------SESDVIMPDLAQIPEIMPESMDGIP 336
                 + E    PI      SE D I P+       M E ++G+P
Sbjct:   372 CETDSGECFD-PIMAVLDESEGDAISPEGEGK---MNELLEGVP 411

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;IMP;RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 145/364 (39%), Positives = 190/364 (52%)

Query:    13 SQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXX-------X 65
             S     L + GFRKVDPDRWEFANEGFLRGQKHLL+ ISRRK                  
Sbjct:   102 SSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLS 161

Query:    66 XXXXXXXXVGACVEVGKFGLEEEVERLKRDKNVLMQELVXXXXXXXXXXXXXXTMVQRLQ 125
                     + +CVEVGKFGLEEEVE+LKRDKNVLMQELV               +V+ LQ
Sbjct:   162 QGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHLQ 221

Query:   126 GMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDD----- 180
              MEQR QQ+M+FLAKAVQ+P FL+QF+Q+Q DSN  + EANKKRR+R++  A  +     
Sbjct:   222 VMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSNMHVTEANKKRRLREDSTAATESNSHS 281

Query:   181 HATTA-DGQIVKYQPSMNEAAKSMLRKIIKMESSQ--LESFNNNHDNYLIXXXXXXXXXX 237
             H+  A DGQIVKYQP  N+   SM+  ++K +     L+ F++ +               
Sbjct:   282 HSLEASDGQIVKYQPLRND---SMMWNMMKTDDKYPFLDGFSSPNQ-------------- 324

Query:   238 XXXXXXXXVTLQEV-PQTSGP---YAPAASGI-LADGPSAAA----TERQSSSRAIASEK 288
                     VTLQEV P TSG    YA   SG  L+  PS +     T    +S+     +
Sbjct:   325 -----VSGVTLQEVLPITSGQSQAYASVPSGQPLSYLPSTSTSLPDTIMPETSQIPQLTR 379

Query:   289 TTTDQFPDINLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENG 348
              + + FP  N +   +      IS S  +  D   +P      ++GIP +  I   M N 
Sbjct:   380 ESINDFPTENFMDTEKNVPEAFISPSPFL--DGGSVPI----QLEGIPEDPEIDELMSNF 433

Query:   349 GYVD 352
              +++
Sbjct:   434 EFLE 437

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
 Identities = 68/160 (42%), Positives = 87/160 (54%)

Query:    13 SQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXXXXXXXXXX 72
             S     L + GFRK+DPDRWEFANEGFL GQKHLL++I RR+                  
Sbjct:    94 SSFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGM---- 149

Query:    73 XVGACVEVGKFGLEEEVERLKRDKNVLMQELVXXXXXXXXXXXXXXTMVQRLQGMEQRHQ 132
                +CVEVG++G + EVERLKRD  VL+ E+V               M QRL   E+R Q
Sbjct:   150 ---SCVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQ 206

Query:   133 QMMAFLAKAVQSPGFLAQFVQQQNDSNKRIA-EANKKRRI 171
             QMM FLAKA+ +P F+ QF     +       +  +KRR+
Sbjct:   207 QMMTFLAKALNNPNFVQQFAVMSKEKKSLFGLDVGRKRRL 246

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0034620 "cellular response to unfolded protein" evidence=IEP;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0010286 "heat acclimation" evidence=RCA;IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 69/160 (43%), Positives = 95/160 (59%)

Query:    13 SQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXXXXXXXXXX 72
             S     L + GFRKV+PDRWEFANEGFLRGQKHLL++I RRK                  
Sbjct:   111 SSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQQS 170

Query:    73 XVGACVEVGKFGLEEEVERLKRDKNVLMQELVXXXXXXXXXXXXXXTMVQRLQGMEQRHQ 132
                 C+EVG++GL+ E++ L+RDK VLM ELV               + ++L+  E + +
Sbjct:   171 LDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTESKQK 230

Query:   133 QMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIR 172
             QMM+FLA+A+Q+P F+ Q V+Q+ +  K I EA  K+R R
Sbjct:   231 QMMSFLARAMQNPDFIQQLVEQK-EKRKEIEEAISKKRQR 269

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2200171 HSFA8 "AT1G67970" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 4.9e-20, P = 4.9e-20
 Identities = 68/200 (34%), Positives = 100/200 (50%)

Query:     9 KEFKSQVYHNLISK----GFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXX 64
             K FK   + + I +    GFRKVD DRWEFAN+GF+RGQK LL+++ RRK          
Sbjct:    62 KYFKHSNFSSFIRQLNIYGFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNVQSSEQSKH 121

Query:    65 XXXXXXXXXVGACVEVGKFGLEEEVERLKRDKNVLMQELVXXXXXXXXXXXXXXTMVQRL 124
                              K GL +EV+ LK DK VL QEL+               +  R+
Sbjct:   122 ESTSTTYAQE-------KSGLWKEVDILKGDKQVLAQELIKVRQYQEVTDTKMLHLEDRV 174

Query:   125 QGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHATT 184
             QGME+  Q+M++FL   +++P  L Q +Q +  +  R  +A +  +I +E V ++  + +
Sbjct:   175 QGMEESQQEMLSFLVMVMKNPSLLVQLLQPKEKNTWR--KAGEGAKIVEE-VTDEGESNS 231

Query:   185 ADGQIVKYQPSM--NEAAKS 202
                 +V YQP    N  AKS
Sbjct:   232 YGLPLVTYQPPSDNNGTAKS 251

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2144603 HSFA3 "AT5G03720" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 63/184 (34%), Positives = 97/184 (52%)

Query:    13 SQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXXXXXXXXXX 72
             S     L + GFRK+D D+WEFANE FLRG+KHLL++I RR+                  
Sbjct:   105 SSFVRQLNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRRSPQSNQTCCSSTSQSQ-- 162

Query:    73 XVGACVEVGKFGLEEEVERLKRDKNVLMQELVXXXXXXXXXXXXXXTMVQRLQGMEQRHQ 132
               G+  EVG  G   E+E+L++++  LM+E+V              T+ QRL+  EQR +
Sbjct:   163 --GSPTEVG--G---EIEKLRKERRALMEEMVELQQQSRGTARHVDTVNQRLKAAEQRQK 215

Query:   133 QMMAFLAKAVQSPGFLAQ---FVQQQNDSNKRIAEANKKRRIRQEGVAEDDHATTADGQI 189
             Q+++FLAK  Q+ GFL +   F  ++      + +A KK  I+     +D   +   G++
Sbjct:   216 QLLSFLAKLFQNRGFLERLKNFKGKEKGGALGLEKARKKF-IKHHQQPQD---SPTGGEV 271

Query:   190 VKYQ 193
             VKY+
Sbjct:   272 VKYE 275

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2091762 HSFC1 "AT3G24520" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
 Identities = 63/192 (32%), Positives = 95/192 (49%)

Query:    13 SQVYHNLISKGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXXXXXXXXXX 72
             S     L + GFRKVDPDRWEFANE FLRGQKHLL +I+RRK                  
Sbjct:    67 SSFVRQLNTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRK--------------HARG 112

Query:    73 XVGACVEVGKFGLEEEVERLKRDKNVLMQELVXXXXXXXXXXXXXXTMVQRLQGMEQRHQ 132
               G  +E G+  +  E+ERLK ++  L  E+                M +R++  E+R +
Sbjct:   113 MYGQDLEDGE--IVREIERLKEEQRELEAEI--------------QRMNRRIEATEKRPE 156

Query:   133 QMMAFLAKAVQSPGFLAQFV-QQQNDSNKRIAEANKKRRIRQEGV-AEDDHATTADGQIV 190
             QMMAFL K V+ P  L + + +++    ++     KKRR+    V +E++     +G++ 
Sbjct:   157 QMMAFLYKVVEDPDLLPRMMLEKERTKQQQQVSDKKKRRVTMSTVKSEEEEVEEDEGRVF 216

Query:   191 KYQPSMNEAAKS 202
             +   S   +  S
Sbjct:   217 RVMSSSTPSPSS 228

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083690 HSFA7A "AT3G51910" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
 Identities = 30/81 (37%), Positives = 48/81 (59%)

Query:    92 LKRDKNVLMQELVXXXXXXXXXXXXXXTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQF 151
             L+R+K VLM E+V               M QR++G E++ +QMM+FLA+A+QSP FL Q 
Sbjct:   136 LRREKQVLMMEIVSLRQQQQTTKSYIKAMEQRIEGTERKQRQMMSFLARAMQSPSFLHQL 195

Query:   152 VQQQNDSNKRIAEANKKRRIR 172
             ++Q++   K + +    +R R
Sbjct:   196 LKQRDKKIKELEDNESAKRKR 216

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0032268 "regulation of cellular protein metabolic process" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LQM7	HFA1D_ARATH	No assigned EC number	0.4743	0.8840	0.8020	yes	no
Q84T61	HSFA1_ORYSJ	No assigned EC number	0.4618	0.9295	0.8083	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_29000103 hypothetical protein (484 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	440
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	8e-11
smart00415	105	smart00415, HSF, heat shock factor	1e-09
pfam12325	121	pfam12325, TMF_TATA_bd, TATA element modulatory fa	5e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score = 58.3 bits (142), Expect = 8e-11
 Identities = 28/62 (45%), Positives = 30/62 (48%), Gaps = 15/62 (24%)

Query: 9  KEFKSQV-----YHNLISK--------GFRKVDPDR--WEFANEGFLRGQKHLLRSISRR 53
          +EF  QV      HN  S         GF KV  DR  WEFA+  F RGQK LL  I RR
Sbjct: 34 EEFAKQVLPKYFKHNNFSSFVRQLNMYGFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRR 93

Query: 54 KP 55
          K 
Sbjct: 94 KS 95

Length = 96

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 22/42 (52%), Positives = 26/42 (61%), Gaps = 11/42 (26%)

Query: 23  GFRKVDP-----------DRWEFANEGFLRGQKHLLRSISRR 53
           GFRKVDP           D+WEFAN  F+RGQ  LLR+I R+
Sbjct: 64  GFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105

Length = 105

>gnl|CDD|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA binding

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 12/53 (22%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 85  LEEEVERLKRDKNVLMQELVRLRQQ---QQASDSQLQTMVQRLQGMEQRHQQM 134
           L++E+ RL+ +++   QE+V+L ++    +    +++ + + L+ +EQR++  
Sbjct: 36  LKDELARLEAERDEARQEIVKLTEENEELRELKKEIEELEKELEDLEQRYETT 88

This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family. Length = 121

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 25/138 (18%), Positives = 64/138 (46%), Gaps = 6/138 (4%)

Query: 85  LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQS 144
           LEE++E L+     L + L  LR++ +  + +L+ + + L+ + ++   +   LA+    
Sbjct: 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741

Query: 145 PGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAE-DDHATTADGQIVKYQPSMNEAAKSM 203
              L + + Q    +K + E   +    +E + E ++    A+ +I + +  + +  + +
Sbjct: 742 VEQLEERIAQL---SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 204 --LRKIIKMESSQLESFN 219
             LR+ +    ++L   N
Sbjct: 799 KALREALDELRAELTLLN 816

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	440
KOG0627	304	consensus Heat shock transcription factor [Transcr	99.97
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	99.68
smart00415	105	HSF heat shock factor.	99.66
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.6
PF03310	121	Cauli_DNA-bind: Caulimovirus DNA-binding protein;	95.84
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	87.07
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	85.73
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	84.71
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	84.06
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	83.86
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	82.74
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	82.55
PF04340	225	DUF484: Protein of unknown function, DUF484; Inter	82.22
PRK15422	79	septal ring assembly protein ZapB; Provisional	82.02
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	80.66
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	80.6

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=99.97  E-value=7.5e-32  Score=264.14  Aligned_cols=154  Identities=40%  Similarity=0.558  Sum_probs=132.4

Q ss_pred             Chhhchhhhhhh----hhhhccccCCCceeec--CCCceeecCCccCCcccccccccccCCCCCCCCCCccccccccC--
Q 013585            1 MEQKGEMGKEFK----SQVYHNLISKGFRKVD--PDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSS--   72 (440)
Q Consensus         1 ~~~k~vLPkyFK----sSFvRQLN~YGFrKv~--~d~wEFahe~F~RGq~~LL~~IkRrk~~~~~s~q~~~q~~~qss--   72 (440)
                      .|++.+||+|||    +|||||||+||||||+  +++|||+|++|+||+++||++|+|||..+...... ..+.....  
T Consensus        48 ~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~~F~rg~~~LL~~I~rrk~~~~~~~~~-~~~~~~~~~~  126 (304)
T KOG0627|consen   48 EFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNPCFVRGQKLLLKNIKRRKSASRIFQTK-DSPKSFERQL  126 (304)
T ss_pred             HHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecChhHhcChHHHHHHHhhhccccCCcccc-cCcchhhhhh
Confidence            389999999999    9999999999999999  99999999999999999999999999887764210 01111100  


Q ss_pred             cCccchhccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 013585           73 SVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFV  152 (440)
Q Consensus        73 s~g~~~E~~k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~Fl~qLv  152 (440)
                      ....++...+..+..++.+|++++++|+.|+++||+++..++.+++.+.+++.+++++|++|+.|+++++++|.|+.++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  206 (304)
T KOG0627|consen  127 NLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAP  206 (304)
T ss_pred             hHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccCchhhHHHHHhhHHHhhccCccchhccc
Confidence            11123344566799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhh
Q 013585          153 QQQ  155 (440)
Q Consensus       153 qq~  155 (440)
                      +.+
T Consensus       207 ~~~  209 (304)
T KOG0627|consen  207 QRQ  209 (304)
T ss_pred             chh
Confidence            764

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=99.68  E-value=6.7e-18  Score=142.55  Aligned_cols=54  Identities=44%  Similarity=0.656  Sum_probs=45.8

Q ss_pred             hhhchhhhhhh----hhhhccccCCCceeecCCC---------ceeecCCccCCcccccccccccCC
Q 013585            2 EQKGEMGKEFK----SQVYHNLISKGFRKVDPDR---------WEFANEGFLRGQKHLLRSISRRKP   55 (440)
Q Consensus         2 ~~k~vLPkyFK----sSFvRQLN~YGFrKv~~d~---------wEFahe~F~RGq~~LL~~IkRrk~   55 (440)
                      |++.|||+||+    +||+||||+|||+|+....         |+|+|++|+||+++||.+|+||++
T Consensus        36 f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~f~h~~F~r~~~~lL~~I~r~~~  102 (103)
T PF00447_consen   36 FEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWEFYHPNFRRGQPDLLSKIKRRKS  102 (103)
T ss_dssp             HHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEEEEETT-BTTBCCCTTTS---TT
T ss_pred             HhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeEECCcCccCCCHHHHhhCccCCC
Confidence            68899999999    9999999999999997543         999999999999999999999874

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>smart00415 HSF heat shock factor

Probab=99.66  E-value=1.9e-17  Score=141.07  Aligned_cols=52  Identities=52%  Similarity=0.834  Sum_probs=49.4

Q ss_pred             hhhchhhhhhh----hhhhccccCCCceeecC-----------CCceeecCCccCCccccccccccc
Q 013585            2 EQKGEMGKEFK----SQVYHNLISKGFRKVDP-----------DRWEFANEGFLRGQKHLLRSISRR   53 (440)
Q Consensus         2 ~~k~vLPkyFK----sSFvRQLN~YGFrKv~~-----------d~wEFahe~F~RGq~~LL~~IkRr   53 (440)
                      |.+.|||+|||    +||+||||+|||+|+..           +.|+|+|++|+||+++||.+|+||
T Consensus        39 f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~~~~~~F~h~~F~Rg~~~lL~~I~Rk  105 (105)
T smart00415       39 FAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK  105 (105)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCCCCceEEECcCccCcCHHHHHhCcCC
Confidence            67899999999    99999999999999986           789999999999999999999997

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.60  E-value=9.3e-17  Score=158.86  Aligned_cols=107  Identities=24%  Similarity=0.356  Sum_probs=70.6

Q ss_pred             Chhhchhhhhhh----hhhhccccCCCceeec-C---------CCceeecCCccCCcccccccccccCCCCCCCCCCccc
Q 013585            1 MEQKGEMGKEFK----SQVYHNLISKGFRKVD-P---------DRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQ   66 (440)
Q Consensus         1 ~~~k~vLPkyFK----sSFvRQLN~YGFrKv~-~---------d~wEFahe~F~RGq~~LL~~IkRrk~~~~~s~q~~~q   66 (440)
                      +|.+.|||+|||    +|||||||+|||+||. .         ..|||.|++|++|..++|++|+|+|........... 
T Consensus        46 ~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~-  124 (282)
T COG5169          46 EFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNE-  124 (282)
T ss_pred             hhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccchhheeecCchhccCcHHHHHHhhhhhcCcccccccCC-
Confidence            588999999999    9999999999999997 1         249999999999999999999997754432111000 


Q ss_pred             cccccCcCccchh---ccccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585           67 QNAQSSSVGACVE---VGKFGLEEEVERLKRDKNVLMQELVRLRQQQ  110 (440)
Q Consensus        67 ~~~qsss~g~~~E---~~k~~Le~EIe~LKrDn~~L~qEL~rLRQqQ  110 (440)
                        ......+.-++   .....+..++.+|...++.++..+.+|+.-+
T Consensus       125 --s~~~~~~~~~~~~i~~~~~~~~~~S~l~~~~~~~~~~~~~lk~~~  169 (282)
T COG5169         125 --SKDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKEYN  169 (282)
T ss_pred             --CCccccchhhhhhhchhcccCcchhHHhhhhHHHhhhhccccchh
Confidence              00000000000   1112244556666666666666666666543

>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part

Probab=95.84  E-value=0.035  Score=49.96  Aligned_cols=70  Identities=16%  Similarity=0.346  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHhhhhhhhhhhhhhcccc
Q 013585           97 NVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKR  169 (440)
Q Consensus        97 ~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~Fl~qLvqq~~~~~~~~~~~~KKR  169 (440)
                      +....||..+++.+..+...+.+|.++++..++.+++|.++-||++++   +...+.+-+=++.-+.+..+++
T Consensus         2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCeC~Kelle~Lk~q~   71 (121)
T PF03310_consen    2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCECNKELLEALKKQP   71 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-TTHHHHHHHHT---
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhchhhHHHHHHHhcCC
Confidence            456789999999999999999999999999999999999999999997   7777755321223334455543

A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=87.07  E-value=2.3  Score=34.71  Aligned_cols=43  Identities=21%  Similarity=0.405  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585           87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQ  129 (440)
Q Consensus        87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEq  129 (440)
                      .|...|+.+...+..|=..|.++......++.+|-.||.+||+
T Consensus        21 ~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq   63 (65)
T TIGR02449        21 SENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            3333444444444444445555555556666666666666653

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=85.73  E-value=5.6  Score=32.82  Aligned_cols=42  Identities=26%  Similarity=0.357  Sum_probs=20.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585           85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG  126 (440)
Q Consensus        85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~  126 (440)
                      |..|++.||.++..|..|-..|+++.+..+.+-.+..+||++
T Consensus        23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~   64 (72)
T PF06005_consen   23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666664444444444444444444444444444433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=84.71  E-value=9.1  Score=37.37  Aligned_cols=69  Identities=23%  Similarity=0.376  Sum_probs=50.7

Q ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHh
Q 013585           82 KFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQ  153 (440)
Q Consensus        82 k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~Fl~qLvq  153 (440)
                      +..+..+++.|+++.+.|.....++.......+.++..+++++..++...+.+.-+|.+++.   -|.++|.
T Consensus        51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~---~L~~~v~  119 (251)
T PF11932_consen   51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID---ELEQFVE  119 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence            33466677777777777777777777777777777888888888888888888888887774   5566664

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=84.06  E-value=6.6  Score=42.70  Aligned_cols=56  Identities=25%  Similarity=0.334  Sum_probs=41.1

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 013585           84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQR-LQGMEQRHQQMMAFLA  139 (440)
Q Consensus        84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eR-Lq~mEqrQqQMmsFLa  139 (440)
                      .+..++..|.++|+.|..|..+||++.++++.+++.--+. -+.+++.++|+-.-+.
T Consensus        70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~  126 (472)
T TIGR03752        70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQ  126 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            5788999999999999999999999999998888643333 2344445555555444

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=83.86  E-value=5.1  Score=36.01  Aligned_cols=58  Identities=28%  Similarity=0.508  Sum_probs=41.6

Q ss_pred             cccCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585           81 GKFGLEEEVERLKRDKNVLMQELVRLRQQQ---QASDSQLQTMVQRLQGMEQRHQQMMAFL  138 (440)
Q Consensus        81 ~k~~Le~EIe~LKrDn~~L~qEL~rLRQqQ---q~~~~qLq~L~eRLq~mEqrQqQMmsFL  138 (440)
                      ....+..++.+|.+.+..+..||++|-...   .....++..|+..+..++.|.+.++-.|
T Consensus        31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell   91 (120)
T PF12325_consen   31 ELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL   91 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344567777888888888888888887776   3445566777777777777777666655

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=82.74  E-value=5.6  Score=32.83  Aligned_cols=36  Identities=22%  Similarity=0.401  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585           88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQR  123 (440)
Q Consensus        88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eR  123 (440)
                      +...|+.++..|..|..+|++++.....++..|-.|
T Consensus        33 ~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k   68 (72)
T PF06005_consen   33 KNNELKEENEELKEENEQLKQERNAWQERLRSLLGK   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333444444444444444444444444333333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.55  E-value=8.6  Score=32.24  Aligned_cols=53  Identities=28%  Similarity=0.448  Sum_probs=34.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585           85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAK  140 (440)
Q Consensus        85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLak  140 (440)
                      |.-||+.||..|+.|.+|+..+++....++.+-+.+.+.-.+   .|..+-+.|.|
T Consensus        23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~---WQerlrsLLGk   75 (79)
T COG3074          23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG---WQERLRALLGK   75 (79)
T ss_pred             HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Confidence            455889999999999999887777766555554444433322   44455555543

>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function

Probab=82.22  E-value=5.6  Score=38.16  Aligned_cols=77  Identities=18%  Similarity=0.343  Sum_probs=36.8

Q ss_pred             eecCCccCCcccccccccccCCCCCCCCCCccccccccCcCccchhccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585           34 FANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQAS  113 (440)
Q Consensus        34 Fahe~F~RGq~~LL~~IkRrk~~~~~s~q~~~q~~~qsss~g~~~E~~k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~  113 (440)
                      =.||.|...+++||..|+=.   |.+               +..+                  ......+.+||++.+.+
T Consensus        16 ~~~PdFf~~~~~ll~~l~~p---h~~---------------~~av------------------SL~erQ~~~LR~~~~~L   59 (225)
T PF04340_consen   16 RQHPDFFERHPELLAELRLP---HPS---------------GGAV------------------SLVERQLERLRERNRQL   59 (225)
T ss_dssp             -------------------------------------------HH------------------HHHHHHHHHHHHHHHHH
T ss_pred             HhCcHHHHhCHHHHHHcCCC---CCC---------------CCcc------------------cHHHHHHHHHHHHHHHH
Confidence            35999999999999988731   110               1011                  22344556677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 013585          114 DSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPG  146 (440)
Q Consensus       114 ~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~  146 (440)
                      +.+++.|.+.-+.-|+.++++..+..+++.-.+
T Consensus        60 ~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~s   92 (225)
T PF04340_consen   60 EEQLEELIENARENEAIFQRLHRLVLALLAARS   92 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            777888888888889999999999888887654

; PDB: 3E98_B.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=82.02  E-value=6  Score=33.57  Aligned_cols=21  Identities=43%  Similarity=0.566  Sum_probs=15.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHH
Q 013585           85 LEEEVERLKRDKNVLMQELVR  105 (440)
Q Consensus        85 Le~EIe~LKrDn~~L~qEL~r  105 (440)
                      |.-||+.||.+|..|.+|+..
T Consensus        23 LqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422         23 LQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            445777888888877777666

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=80.66  E-value=10  Score=35.93  Aligned_cols=54  Identities=19%  Similarity=0.364  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013585           89 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAV  142 (440)
Q Consensus        89 Ie~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakav  142 (440)
                      ...++.++..|..|+.+|+++...++.++..|.+++..++..-+.|+..+-+|-
T Consensus        99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR  152 (161)
T TIGR02894        99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR  152 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888888888888888888888888999999888888888887776553

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=80.60  E-value=13  Score=34.45  Aligned_cols=60  Identities=30%  Similarity=0.404  Sum_probs=50.5

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013585           84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQ  143 (440)
Q Consensus        84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavq  143 (440)
                      .+..+++.+....+.|..||..++.+...+...++.+.+|+...|..+.-+.++|..+=+
T Consensus        56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~  115 (140)
T PF10473_consen   56 TLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQ  115 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            467788888888888999999999999999999999999999999888877777764443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	440
2ldu_A	125	Heat shock factor protein 1; structural genomics,	9e-11
1hks_A	106	Heat-shock transcription factor; transcription reg	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score = 58.2 bits (141), Expect = 9e-11
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 11/46 (23%)

Query: 23  GFRKV-----------DPDRWEFANEGFLRGQKHLLRSISRRKPAH 57
           GFRKV           + D  EF +  FLRGQ+ LL +I R+  + 
Sbjct: 79  GFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSV 124

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score = 55.0 bits (133), Expect = 8e-10
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 10/41 (24%)

Query: 23  GFRKV----------DPDRWEFANEGFLRGQKHLLRSISRR 53
           GF K+          D D  EF++  F R    LL  I R+
Sbjct: 66  GFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 7e-09
 Identities = 53/407 (13%), Positives = 112/407 (27%), Gaps = 110/407 (27%)

Query: 3   QKGEMGKEFKSQVYHNLISKGFRKVDPDRWEFANEGFLRGQ------KHLLRS------- 49
           + GE   ++K  +        F   + D  +   +   +         H++ S       
Sbjct: 10  ETGEHQYQYKDILSVFE--DAFVD-NFDCKDV--QDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 50  -----ISRRKPAHGHGH--QQSHQQN-------AQSSSVGACVEVGKFGLEEEVERLKRD 95
                    K         ++  + N        ++      +    +   E+ +RL  D
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY--IEQRDRLYND 122

Query: 96  KNVLMQELVRLRQQQQASDSQLQTMVQRLQ--------GMEQRHQQMMAFLAKAVQSPGF 147
             V  +  V  R Q      +L+  +  L+        G+    +  +A       S   
Sbjct: 123 NQVFAKYNVS-RLQPY---LKLRQALLELRPAKNVLIDGVLGSGKTWVA--LDVCLSYKV 176

Query: 148 LAQF--------VQQQNDSNKRIAEANK-KRRIRQEGVAEDDHATTADGQIVKYQPSMNE 198
             +         ++  N     +    K   +I     +  DH++               
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN--------IKLRIH 228

Query: 199 AAKSMLRKIIKME--------------SSQLESFNNN-------HDNYLIGDGASSSNTG 237
           + ++ LR+++K +              +    +FN +           +  D  S++ T 
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT-DFLSAATTT 287

Query: 238 STSSRMSGVTLQEVPQTSGPYAPAASGILADGPSAAATERQSSSRAIA-------SEKTT 290
             S     +TL    +              D P        ++ R ++           T
Sbjct: 288 HISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREV---LTTNPRRLSIIAESIRDGLAT 343

Query: 291 TDQFPDINL--LVAAQEATSLPISESD---------VIMPDLAQIPE 326
            D +  +N   L    E+ SL + E            + P  A IP 
Sbjct: 344 WDNWKHVNCDKLTTIIES-SLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	440
2ldu_A	125	Heat shock factor protein 1; structural genomics,	99.8
1hks_A	106	Heat-shock transcription factor; transcription reg	99.8
3hts_B	102	Heat shock transcription factor; transcription reg	99.47
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	84.52

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.80  E-value=7e-21  Score=166.72  Aligned_cols=55  Identities=40%  Similarity=0.524  Sum_probs=51.5

Q ss_pred             hhhchhhhhhh----hhhhccccCCCceeec-----------CCCceeecCCccCCcccccccccccCCC
Q 013585            2 EQKGEMGKEFK----SQVYHNLISKGFRKVD-----------PDRWEFANEGFLRGQKHLLRSISRRKPA   56 (440)
Q Consensus         2 ~~k~vLPkyFK----sSFvRQLN~YGFrKv~-----------~d~wEFahe~F~RGq~~LL~~IkRrk~~   56 (440)
                      |+++|||+|||    +||+||||+||||||.           ++.|||+|++|+||+++||.+|+||+++
T Consensus        54 F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~  123 (125)
T 2ldu_A           54 FAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTS  123 (125)
T ss_dssp             HHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSSCSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred             HHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccccccccCCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence            78999999999    9999999999999994           4689999999999999999999999865

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=99.80  E-value=5.7e-21  Score=162.41  Aligned_cols=53  Identities=28%  Similarity=0.388  Sum_probs=49.8

Q ss_pred             Chhhchhhhhhh----hhhhccccCCCceeec----------CCCceeecCCccCCccccccccccc
Q 013585            1 MEQKGEMGKEFK----SQVYHNLISKGFRKVD----------PDRWEFANEGFLRGQKHLLRSISRR   53 (440)
Q Consensus         1 ~~~k~vLPkyFK----sSFvRQLN~YGFrKv~----------~d~wEFahe~F~RGq~~LL~~IkRr   53 (440)
                      .|+++|||+|||    +||+||||+||||||.          ++.|||+|++|+||+++||.+|+||
T Consensus        40 ~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           40 QFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             HHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCCCCceEEECcCccCcCHHHHhhCcCC
Confidence            378999999999    9999999999999995          4789999999999999999999997

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.47  E-value=6.1e-15  Score=125.60  Aligned_cols=37  Identities=35%  Similarity=0.529  Sum_probs=35.1

Q ss_pred             hhhchhhhhhh----hhhhccccCCCceeec-----------CCCceeecCC
Q 013585            2 EQKGEMGKEFK----SQVYHNLISKGFRKVD-----------PDRWEFANEG   38 (440)
Q Consensus         2 ~~k~vLPkyFK----sSFvRQLN~YGFrKv~-----------~d~wEFahe~   38 (440)
                      |+++|||+|||    +||+||||+||||||.           +++|||+|++
T Consensus        49 F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~~~~~~wEF~n~~  100 (102)
T 3hts_B           49 FVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER  100 (102)
T ss_dssp             HHHHTHHHHCSSCCHHHHHHHHHHTTEEECC---------CCSCCEEEEECC
T ss_pred             HHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccCCCcCCeEecCCC
Confidence            78899999999    9999999999999998           7899999997

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=84.52  E-value=2.9  Score=34.31  Aligned_cols=25  Identities=36%  Similarity=0.498  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585           86 EEEVERLKRDKNVLMQELVRLRQQQ  110 (440)
Q Consensus        86 e~EIe~LKrDn~~L~qEL~rLRQqQ  110 (440)
                      .-||+.||.+|..|.+|...++...
T Consensus        26 qmEieELKekN~~L~~e~~e~~~~~   50 (81)
T 2jee_A           26 QMEIEELKEKNNSLSQEVQNAQHQR   50 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4477777777777777666644433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	440
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	4e-08

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score = 48.7 bits (116), Expect = 4e-08
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 20  ISKGFRKVDPDRWEFANEGFLRGQKHLLRSISRR 53
           I  G  + D D  EF++  F R    LL  I R+
Sbjct: 73  IDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	440
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	99.66
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.19

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.66  E-value=4.4e-18  Score=142.33  Aligned_cols=52  Identities=29%  Similarity=0.402  Sum_probs=48.4

Q ss_pred             hhhchhhhhhh----hhhhccccCCCceeec----------CCCceeecCCccCCccccccccccc
Q 013585            2 EQKGEMGKEFK----SQVYHNLISKGFRKVD----------PDRWEFANEGFLRGQKHLLRSISRR   53 (440)
Q Consensus         2 ~~k~vLPkyFK----sSFvRQLN~YGFrKv~----------~d~wEFahe~F~RGq~~LL~~IkRr   53 (440)
                      |+++|||+|||    +||+||||+|||+||.          ++.|+|+|++|+||+++||.+|+||
T Consensus        41 f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          41 FAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             HHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccCCCCccEEECccccCCCHHHHhhCcCC
Confidence            78999999999    9999999999999984          4579999999999999999999986

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.19  E-value=1.3e-12  Score=107.27  Aligned_cols=38  Identities=34%  Similarity=0.514  Sum_probs=34.0

Q ss_pred             hhhchhhhhhh----hhhhccccCCCceeec-----------CCCceeecCCc
Q 013585            2 EQKGEMGKEFK----SQVYHNLISKGFRKVD-----------PDRWEFANEGF   39 (440)
Q Consensus         2 ~~k~vLPkyFK----sSFvRQLN~YGFrKv~-----------~d~wEFahe~F   39 (440)
                      |++.|||+|||    +||+||||+|||+||.           ++.|||+|+.+
T Consensus        39 f~~~vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~~~~eF~h~~~   91 (92)
T d2htsa_          39 FVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENERH   91 (92)
T ss_dssp             HHHHTHHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----CCCCEEEEESCC
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCCCCCEEEecCCC
Confidence            68999999999    9999999999999985           45799999853