Citrus Sinensis ID: 013596

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
MAVATGSSSCCKLAKPCAFTTSNSSQSPFKLKKFTASPAKSTSIRCTIARDPVVPMEAKKESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHKLIVR
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHccccEEEccHHHHHHHcHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHcccccccccccEEEEEcccccccccccccccccccccEEEEccEEEEEcccccccccccccccccccccccHHcccccccccEEEEEccHHHHHccccccccHHHHHHHHHHccHHccccccccccc
ccccccccccccccccccccccccccccccHccccccccccccEEEEEcccccccccccccccccccccccccccEccEEEEEccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccEEEcccccHHHHcccccccEEEEEEHHHccccEccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHccEEEEEEEHHHHHHcHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHcccEEEccccccccccHHHHHHHcccHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHccccccEEEEEEEEEccHHHcccccHHHHcEEEEEcEEEEEEcEcccccEcccccccHHHcccEccHHHHHHHHcccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEc
mavatgsssccklakpcafttsnssqspfklkkftaspakstsirctiardpvvpmeakkesdpapwqrpdvfgrfgrfggkfvpETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTehyrrpngggphiylkredlnhtgahkINNAVGQALLAKRLGKTRiiaetgagqhgvATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVhsgtatlkdATSEAIRDWVTNVETTHYIlgsvagphpypmmVRDFHAVIGKETRRQALEkwggkpdvliacvgggsnamglfhefvndkdvrLIGVEAagfgldsgkhaatlskgeVGVLHGALSYLlqnedgqiiephsisagldypgvgpehsflkdegraeyynvtddeALEGMKLYLILPFKllsrhgglWLLVNCLHKLIVR
mavatgsssccklakpcafttsnssqspfklkkftaspakstsirctiardpvvpmeakkesdpapwqrpdVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERltehyrrpngggpHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAEtgagqhgvaTATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHsgtatlkdatseaIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHKLIVR
MAVATGSSSCCKLAKPCAFTTSNSSQSPFKLKKFTASPAKSTSIRCTIARDPVVPMEAKKESDPAPWQRPDVfgrfgrfggkfVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHKLIVR
********************************************************************RPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACV*********FHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHKLIV*
************************************************************************FGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHKLIVR
**********CKLAKPCAFTTSNSSQSPFKLKK*********SIRCTIARDPVVP**********PWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHKLIVR
****************************FKLKKFTASPAKSTSIRCTIARDPVVPMEAK*ESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHKLIVR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAVATGSSSCCKLAKPCAFTTSNSSQSPFKLKKFTASPAKSTSIRCTIARDPVVPMEAKKESDPAPWQRPDVFGRFGRFGGKFVPETLMYAxxxxxxxxxxxxxxxxxxxxxSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHKLIVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query439 2.2.26 [Sep-21-2011]
P14671470 Tryptophan synthase beta yes no 0.913 0.853 0.798 0.0
P25269475 Tryptophan synthase beta no no 0.961 0.888 0.747 0.0
O50046466 Tryptophan synthase beta N/A no 0.917 0.864 0.791 0.0
P43284443 Tryptophan synthase beta N/A no 0.822 0.814 0.810 1e-177
P43283389 Tryptophan synthase beta N/A no 0.801 0.904 0.811 1e-171
Q3MBV3413 Tryptophan synthase beta yes no 0.835 0.888 0.752 1e-166
Q8YQM6413 Tryptophan synthase beta yes no 0.835 0.888 0.749 1e-166
Q118P8409 Tryptophan synthase beta yes no 0.792 0.850 0.778 1e-164
Q8YZP7409 Tryptophan synthase beta no no 0.820 0.880 0.733 1e-160
Q8DG49410 Tryptophan synthase beta yes no 0.824 0.882 0.752 1e-158
>sp|P14671|TRPB1_ARATH Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1 Back     alignment and function desciption
 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/416 (79%), Positives = 361/416 (86%), Gaps = 15/416 (3%)

Query: 26  QSPFKLKKFTASPAKSTSIR-----CTIARDPVVPMEAKKESDPAPWQRPDVFGRFGRFG 80
           +SPFK  K+T  P+  +        CTIA+DP V M A   SDPA WQRPD FGRFG+FG
Sbjct: 28  KSPFKAVKYTPLPSSRSKSSSFSVSCTIAKDPPVLMAAG--SDPALWQRPDSFGRFGKFG 85

Query: 81  GKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPN 140
           GK+VPETLM+ALSELESA + LA D DFQ EL+GIL+DYVGRE+PLYFAERLTEHYRR N
Sbjct: 86  GKYVPETLMHALSELESAFYALATDDDFQRELAGILKDYVGRESPLYFAERLTEHYRREN 145

Query: 141 GGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFG 200
           G GP IYLKREDLNHTGAHKINNAV QALLAKRLGK RIIAETGAGQHGVATATVCARFG
Sbjct: 146 GEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFG 205

Query: 201 LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYI 260
           L+CI+YMGAQDMERQALNVFRMRLLGAEVR VHSGTATLKDATSEAIRDWVTNVETTHYI
Sbjct: 206 LECIIYMGAQDMERQALNVFRMRLLGAEVRGVHSGTATLKDATSEAIRDWVTNVETTHYI 265

Query: 261 LGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVND 320
           LGSVAGPHPYPMMVRDFHAVIGKETR+QALEKWGGKPDVL+ACVGGGSNAMGLFHEFVND
Sbjct: 266 LGSVAGPHPYPMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVND 325

Query: 321 KDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYP 380
            +VR+IGVEAAGFGLDSGKHAATL+KG+VGVLHGA+SYLLQ++DGQIIEPHSISAGLDYP
Sbjct: 326 TEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYP 385

Query: 381 GVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHKL 436
           GVGPEHSF KD GRAEYY++TD+EALE         FK +SR  G+   +   H L
Sbjct: 386 GVGPEHSFFKDMGRAEYYSITDEEALEA--------FKRVSRLEGIIPALETSHAL 433
The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 0
>sp|P25269|TRBP2_ARATH Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2 Back     alignment and function description
>sp|O50046|TRPB_CAMAC Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1 Back     alignment and function description
>sp|P43284|TRPB2_MAIZE Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1 Back     alignment and function description
>sp|P43283|TRPB1_MAIZE Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1 Back     alignment and function description
>sp|Q3MBV3|TRPB_ANAVT Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1 Back     alignment and function description
>sp|Q8YQM6|TRPB2_NOSS1 Tryptophan synthase beta chain 2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpB2 PE=3 SV=1 Back     alignment and function description
>sp|Q118P8|TRPB_TRIEI Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1 Back     alignment and function description
>sp|Q8YZP7|TRPB1_NOSS1 Tryptophan synthase beta chain 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpB1 PE=3 SV=1 Back     alignment and function description
>sp|Q8DG49|TRPB_THEEB Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
449485373472 PREDICTED: tryptophan synthase beta chai 0.927 0.862 0.782 0.0
297796355471 tryptophan synthase beta-subunit [Arabid 0.911 0.849 0.804 0.0
449449611472 PREDICTED: tryptophan synthase beta chai 0.927 0.862 0.780 0.0
15239755470 tryptophan synthase beta chain [Arabidop 0.913 0.853 0.798 0.0
297803394471 tryptophan synthase beta-subunit [Arabid 0.970 0.904 0.753 0.0
15236977475 tryptophan synthase beta chain [Arabidop 0.961 0.888 0.747 0.0
3915165466 RecName: Full=Tryptophan synthase beta c 0.917 0.864 0.791 0.0
356567382471 PREDICTED: tryptophan synthase beta chai 0.920 0.857 0.776 0.0
57157621474 tryptophan synthase beta subunit [Polygo 0.924 0.856 0.767 0.0
357459333466 Tryptophan synthase beta chain [Medicago 0.961 0.905 0.731 0.0
>gi|449485373|ref|XP_004157148.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/419 (78%), Positives = 369/419 (88%), Gaps = 12/419 (2%)

Query: 21  TSNSSQSPFKLKKFTASPA---KSTSIRCTIARDPVVPMEAKKESDPAPWQRPDVFGRFG 77
           +S++S  P + ++ +++P+   +S ++ CT+ R+P + ME  K  D +  QRPD FGRFG
Sbjct: 26  SSSTSHFPVRFRRVSSNPSPVFRSNAVSCTLTREPSLAME-DKVHDSSLQQRPDSFGRFG 84

Query: 78  RFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYR 137
           RFGGK+VPETLM+AL+ELE+A + LA D+DFQ+EL GILRDYVGRE+PLYFAERLTEHYR
Sbjct: 85  RFGGKYVPETLMHALTELETAFYSLAGDQDFQKELDGILRDYVGRESPLYFAERLTEHYR 144

Query: 138 RPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCA 197
           R NG GPHI+LKREDLNHTGAHKINNAV QALLAKRLGK RIIAETGAGQHGVATATVCA
Sbjct: 145 RSNGEGPHIFLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCA 204

Query: 198 RFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETT 257
           RFGL+CI+YMGAQDMERQALNVFRM+LLGAEVR VHSGTATLKDATSEAIRDWVTNVETT
Sbjct: 205 RFGLECIIYMGAQDMERQALNVFRMQLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETT 264

Query: 258 HYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEF 317
           HYILGSVAGPHPYPMMVRDFHAVIGKETR+QALEKWGGKPDVL+ACVGGGSNAMGLFHEF
Sbjct: 265 HYILGSVAGPHPYPMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEF 324

Query: 318 VNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGL 377
           VNDKDVRL+GVEAAGFGLDSGKHAATL+KGEVGVLHGA+SYLLQ++DGQIIEPHSISAGL
Sbjct: 325 VNDKDVRLVGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGL 384

Query: 378 DYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHKL 436
           DYPGVGPEHS+LKD GRAEY++VTDDEALE         FK LSR  G+   +   H L
Sbjct: 385 DYPGVGPEHSYLKDLGRAEYHSVTDDEALEA--------FKRLSRLEGIIPALETSHAL 435

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297796355|ref|XP_002866062.1| tryptophan synthase beta-subunit [Arabidopsis lyrata subsp. lyrata] gi|297311897|gb|EFH42321.1| tryptophan synthase beta-subunit [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449449611|ref|XP_004142558.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15239755|ref|NP_200292.1| tryptophan synthase beta chain [Arabidopsis thaliana] gi|136251|sp|P14671.1|TRPB1_ARATH RecName: Full=Tryptophan synthase beta chain 1, chloroplastic; Flags: Precursor gi|14194117|gb|AAK56253.1|AF367264_1 AT5g54810/MBG8_7 [Arabidopsis thaliana] gi|166892|gb|AAA32878.1| tryptophan synthase beta subunit [Arabidopsis thaliana] gi|9758261|dbj|BAB08760.1| tryptophan synthase beta chain 1 precursor [Arabidopsis thaliana] gi|21592983|gb|AAM64932.1| tryptophan synthase beta chain 1 precursor [Arabidopsis thaliana] gi|22137210|gb|AAM91450.1| AT5g54810/MBG8_7 [Arabidopsis thaliana] gi|110742593|dbj|BAE99210.1| tryptophan synthase beta chain 1 precursor [Arabidopsis thaliana] gi|332009160|gb|AED96543.1| tryptophan synthase beta chain [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297803394|ref|XP_002869581.1| tryptophan synthase beta-subunit [Arabidopsis lyrata subsp. lyrata] gi|297315417|gb|EFH45840.1| tryptophan synthase beta-subunit [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15236977|ref|NP_194437.1| tryptophan synthase beta chain [Arabidopsis thaliana] gi|1174779|sp|P25269.2|TRBP2_ARATH RecName: Full=Tryptophan synthase beta chain 2, chloroplastic; Flags: Precursor gi|166894|gb|AAA32879.1| tryptophan synthase beta-subunit [Arabidopsis thaliana] gi|4490703|emb|CAB38837.1| tryptophan synthase beta-subunit (TSB2) [Arabidopsis thaliana] gi|7269560|emb|CAB79562.1| tryptophan synthase beta-subunit (TSB2) [Arabidopsis thaliana] gi|21536585|gb|AAM60917.1| tryptophan synthase beta-subunit TSB2 [Arabidopsis thaliana] gi|27808592|gb|AAO24576.1| At4g27070 [Arabidopsis thaliana] gi|110736231|dbj|BAF00086.1| tryptophan synthase beta-subunit [Arabidopsis thaliana] gi|332659896|gb|AEE85296.1| tryptophan synthase beta chain [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|3915165|sp|O50046.1|TRPB_CAMAC RecName: Full=Tryptophan synthase beta chain 2, chloroplastic; Flags: Precursor gi|2792520|gb|AAB97087.1| tryptophan synthase beta subunit [Camptotheca acuminata] gi|2801771|gb|AAB97526.1| tryptophan synthase beta [Camptotheca acuminata] Back     alignment and taxonomy information
>gi|356567382|ref|XP_003551899.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|57157621|dbj|BAD83779.1| tryptophan synthase beta subunit [Polygonum tinctorium] Back     alignment and taxonomy information
>gi|357459333|ref|XP_003599947.1| Tryptophan synthase beta chain [Medicago truncatula] gi|355488995|gb|AES70198.1| Tryptophan synthase beta chain [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
TAIR|locus:2160190470 TSB1 "tryptophan synthase beta 0.922 0.861 0.783 8.2e-170
TAIR|locus:2005543475 TSB2 "tryptophan synthase beta 0.924 0.854 0.763 2.2e-167
TIGR_CMR|DET_1487399 DET_1487 "tryptophan synthase, 0.735 0.809 0.670 1.8e-117
TAIR|locus:1006230667465 AT5G28237 "AT5G28237" [Arabido 0.740 0.698 0.644 3.4e-116
TIGR_CMR|CHY_1582402 CHY_1582 "tryptophan synthase, 0.772 0.843 0.626 4.5e-114
TIGR_CMR|BA_1253397 BA_1253 "tryptophan synthase, 0.731 0.808 0.645 1.5e-113
TIGR_CMR|SPO_0808416 SPO_0808 "tryptophan synthase, 0.735 0.776 0.617 1.2e-106
UNIPROTKB|P66984422 trpB "Tryptophan synthase beta 0.735 0.765 0.591 6.7e-104
ASPGD|ASPL0000007723723 trpB [Emericella nidulans (tax 0.765 0.464 0.583 1.3e-102
CGD|CAL0004378702 TRP5 [Candida albicans (taxid: 0.733 0.458 0.589 1e-100
TAIR|locus:2160190 TSB1 "tryptophan synthase beta-subunit 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1651 (586.2 bits), Expect = 8.2e-170, P = 8.2e-170
 Identities = 325/415 (78%), Positives = 358/415 (86%)

Query:     4 ATGSSSCCKLAKPCAFTTSNSS---QSPFKLKKFTASPA---KSTS--IRCTIARDPVVP 55
             A+G+S+  + +   A ++S+     +SPFK  K+T  P+   KS+S  + CTIA+DP V 
Sbjct:     3 ASGTSATFRASVSSAPSSSSQLTHLKSPFKAVKYTPLPSSRSKSSSFSVSCTIAKDPPVL 62

Query:    56 MEAKKESDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGI 115
             M A   SDPA WQRPD            VPETLM+ALSELESA + LA D DFQ EL+GI
Sbjct:    63 MAAG--SDPALWQRPDSFGRFGKFGGKYVPETLMHALSELESAFYALATDDDFQRELAGI 120

Query:   116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG 175
             L+DYVGRE+PLYFAERLTEHYRR NG GP IYLKREDLNHTGAHKINNAV QALLAKRLG
Sbjct:   121 LKDYVGRESPLYFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLG 180

Query:   176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235
             K RIIAETGAGQHGVATATVCARFGL+CI+YMGAQDMERQALNVFRMRLLGAEVR VHSG
Sbjct:   181 KKRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRGVHSG 240

Query:   236 TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGG 295
             TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETR+QALEKWGG
Sbjct:   241 TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQALEKWGG 300

Query:   296 KPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGA 355
             KPDVL+ACVGGGSNAMGLFHEFVND +VR+IGVEAAGFGLDSGKHAATL+KG+VGVLHGA
Sbjct:   301 KPDVLVACVGGGSNAMGLFHEFVNDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGA 360

Query:   356 LSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMK 410
             +SYLLQ++DGQIIEPHSISAGLDYPGVGPEHSF KD GRAEYY++TD+EALE  K
Sbjct:   361 MSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFFKDMGRAEYYSITDEEALEAFK 415
GO:0003824 "catalytic activity" evidence=IEA
GO:0004834 "tryptophan synthase activity" evidence=IEA;IMP;IDA
GO:0006568 "tryptophan metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;ISS;IDA
GO:0030170 "pyridoxal phosphate binding" evidence=IEA
GO:0009651 "response to salt stress" evidence=IEP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0000162 "tryptophan biosynthetic process" evidence=TAS
GO:0009684 "indoleacetic acid biosynthetic process" evidence=TAS
GO:0006979 "response to oxidative stress" evidence=IEP
TAIR|locus:2005543 TSB2 "tryptophan synthase beta-subunit 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1487 DET_1487 "tryptophan synthase, beta subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TAIR|locus:1006230667 AT5G28237 "AT5G28237" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1582 CHY_1582 "tryptophan synthase, beta subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1253 BA_1253 "tryptophan synthase, beta subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0808 SPO_0808 "tryptophan synthase, beta subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P66984 trpB "Tryptophan synthase beta chain" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007723 trpB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0004378 TRP5 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q63EC7TRPB_BACCZ4, ., 2, ., 1, ., 2, 00.62890.77440.8564yesno
Q8YQM6TRPB2_NOSS14, ., 2, ., 1, ., 2, 00.74930.83590.8886yesno
Q118P8TRPB_TRIEI4, ., 2, ., 1, ., 2, 00.77870.79270.8508yesno
O50046TRPB_CAMAC4, ., 2, ., 1, ., 2, 00.79180.91790.8648N/Ano
Q59992TRPB_SYNY34, ., 2, ., 1, ., 2, 00.75510.78130.8325N/Ano
Q92B81TRPB_LISIN4, ., 2, ., 1, ., 2, 00.60.81320.8925yesno
P43283TRPB1_MAIZE4, ., 2, ., 1, ., 2, 00.81110.80180.9048N/Ano
A0AJ80TRPB_LISW64, ., 2, ., 1, ., 2, 00.60.81320.8925yesno
P43284TRPB2_MAIZE4, ., 2, ., 1, ., 2, 00.81020.82230.8148N/Ano
B8DHB4TRPB_LISMH4, ., 2, ., 1, ., 2, 00.60270.81320.8925yesno
Q3AW11TRPB_SYNS94, ., 2, ., 1, ., 2, 00.68680.84510.8875yesno
B1YLS4TRPB_EXIS24, ., 2, ., 1, ., 2, 00.61730.77440.8521yesno
A5GP60TRPB_SYNPW4, ., 2, ., 1, ., 2, 00.71460.84050.8870yesno
P25269TRBP2_ARATH4, ., 2, ., 1, ., 2, 00.74770.96120.8884nono
Q8DG49TRPB_THEEB4, ., 2, ., 1, ., 2, 00.75270.82460.8829yesno
A2BNV9TRPB_PROMS4, ., 2, ., 1, ., 2, 00.69370.82680.8768yesno
P14671TRPB1_ARATH4, ., 2, ., 1, ., 2, 00.79800.91340.8531yesno
Q8YZP7TRPB1_NOSS14, ., 2, ., 1, ., 2, 00.73360.82000.8801nono
A9BD24TRPB_PROM44, ., 2, ., 1, ., 2, 00.67900.84510.8918yesno
Q7TUL2TRPB_PROMM4, ., 2, ., 1, ., 2, 00.67940.86330.8692yesno
B0K8T6TRPB_THEP34, ., 2, ., 1, ., 2, 00.64860.74710.8388yesno
Q7TUH0TRPB_PROMP4, ., 2, ., 1, ., 2, 00.66920.86100.9130yesno
Q31D17TRPB_PROM94, ., 2, ., 1, ., 2, 00.67750.82680.8768yesno
Q7NGX9TRPB_GLOVI4, ., 2, ., 1, ., 2, 00.72510.76760.8140yesno
Q71Z40TRPB_LISMF4, ., 2, ., 1, ., 2, 00.60270.81320.8925yesno
Q2JLD7TRPB_SYNJB4, ., 2, ., 1, ., 2, 00.7040.82230.8494yesno
A8G2H0TRPB_PROM24, ., 2, ., 1, ., 2, 00.68290.82680.8768yesno
Q8R9M9TRPB_THETN4, ., 2, ., 1, ., 2, 00.62800.79720.8951yesno
C1KVS5TRPB_LISMC4, ., 2, ., 1, ., 2, 00.60270.81320.8925yesno
Q4KKP4TRPB_PSEF54, ., 2, ., 1, ., 2, 00.66170.75620.8177yesno
B7I0F2TRPB_BACC74, ., 2, ., 1, ., 2, 00.62600.77440.8564yesno
C1ELF0TRPB_BACC34, ., 2, ., 1, ., 2, 00.62890.77440.8564yesno
Q7VE26TRPB_PROMA4, ., 2, ., 1, ., 2, 00.72590.77900.8221yesno
Q3AGY2TRPB_SYNSC4, ., 2, ., 1, ., 2, 00.70020.83820.8803yesno
P07345TRPB_PSEAE4, ., 2, ., 1, ., 2, 00.67450.75850.8283yesno
A2BUE1TRPB_PROM54, ., 2, ., 1, ., 2, 00.68560.82680.8768yesno
A3PAN2TRPB_PROM04, ., 2, ., 1, ., 2, 00.69100.82680.8768yesno
Q604P3TRPB_METCA4, ., 2, ., 1, ., 2, 00.61720.81540.8839yesno
B4RCL0TRPB_PHEZH4, ., 2, ., 1, ., 2, 00.64300.80630.8719yesno
A2BZZ2TRPB_PROM14, ., 2, ., 1, ., 2, 00.72720.80180.8441yesno
Q97EF5TRPB_CLOAB4, ., 2, ., 1, ., 2, 00.62940.76080.8477yesno
Q3MBV3TRPB_ANAVT4, ., 2, ., 1, ., 2, 00.7520.83590.8886yesno
Q7TTS6TRPB_SYNPX4, ., 2, ., 1, ., 2, 00.69760.83820.8803yesno
Q8Y6Q6TRPB_LISMO4, ., 2, ., 1, ., 2, 00.60270.81320.8925yesno
Q0I6V1TRPB_SYNS34, ., 2, ., 1, ., 2, 00.70820.83820.8803yesno
B0K2T9TRPB_THEPX4, ., 2, ., 1, ., 2, 00.65160.74710.8388yesno
B7J4S9TRPB_ACIF24, ., 2, ., 1, ., 2, 00.65580.76300.8395yesno
O66923TRPB1_AQUAE4, ., 2, ., 1, ., 2, 00.62800.81540.9017yesno
Q46HK9TRPB_PROMT4, ., 2, ., 1, ., 2, 00.72440.80180.8441yesno
B5EK18TRPB_ACIF54, ., 2, ., 1, ., 2, 00.65580.76300.8395yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.2.1.200.979
3rd Layer4.2.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.8__1378__AT5G54810.1
annotation not avaliable (471 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
scaffold_601857.1
annotation not avaliable (444 aa)
• •• •• 0.978
fgenesh2_kg.8__689__AT5G48220.1
annotation not avaliable (375 aa)
•••• •• 0.969
scaffold_604010.1
annotation not avaliable (276 aa)
••••••• 0.968
fgenesh2_kg.6__493__AT1G07780.3
annotation not avaliable (275 aa)
•••   • 0.962
fgenesh2_kg.3__2787__AT2G04400.1
annotation not avaliable (402 aa)
•••• •• 0.959
fgenesh2_kg.5__1860__AT3G54640.1
annotation not avaliable (313 aa)
••••••• 0.959
fgenesh1_pg.C_scaffold_5002065
annotation not avaliable (520 aa)
•  •  • 0.895
fgenesh2_kg.6__508__AT5G05730.1
annotation not avaliable (596 aa)
•  •  • 0.878
fgenesh2_kg.4__945__AT2G29690.1
annotation not avaliable (622 aa)
•  •  • 0.858
fgenesh2_kg.1__2814__AT5G57890.1
annotation not avaliable (277 aa)
•    •• 0.837

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
PLN02618410 PLN02618, PLN02618, tryptophan synthase, beta chai 0.0
PRK04346397 PRK04346, PRK04346, tryptophan synthase subunit be 0.0
COG0133396 COG0133, TrpB, Tryptophan synthase beta chain [Ami 0.0
cd06446365 cd06446, Trp-synth_B, Tryptophan synthase-beta: Tr 0.0
PRK13028402 PRK13028, PRK13028, tryptophan synthase subunit be 0.0
TIGR00263385 TIGR00263, trpB, tryptophan synthase, beta subunit 0.0
PRK13803610 PRK13803, PRK13803, bifunctional phosphoribosylant 0.0
PRK13802695 PRK13802, PRK13802, bifunctional indole-3-glycerol 1e-136
cd00640244 cd00640, Trp-synth-beta_II, Tryptophan synthase be 3e-54
PRK12391427 PRK12391, PRK12391, tryptophan synthase subunit be 2e-47
COG1350432 COG1350, COG1350, Predicted alternative tryptophan 3e-44
TIGR01415419 TIGR01415, trpB_rel, pyridoxal-phosphate dependent 1e-43
pfam00291295 pfam00291, PALP, Pyridoxal-phosphate dependent enz 3e-33
cd01562304 cd01562, Thr-dehyd, Threonine dehydratase: The fir 5e-16
COG1171347 COG1171, IlvA, Threonine dehydratase [Amino acid t 5e-15
cd01561291 cd01561, CBS_like, CBS_like: This subgroup include 1e-12
cd01563324 cd01563, Thr-synth_1, Threonine synthase is a pyri 5e-11
COG0031300 COG0031, CysK, Cysteine synthase [Amino acid trans 6e-11
COG2515323 COG2515, Acd, 1-aminocyclopropane-1-carboxylate de 7e-11
cd06449307 cd06449, ACCD, Aminocyclopropane-1-carboxylate dea 1e-09
PRK03910331 PRK03910, PRK03910, D-cysteine desulfhydrase; Vali 1e-09
PRK08639420 PRK08639, PRK08639, threonine dehydratase; Validat 5e-09
TIGR02079409 TIGR02079, THD1, threonine dehydratase 6e-09
PRK06815317 PRK06815, PRK06815, hypothetical protein; Provisio 8e-09
cd06448316 cd06448, L-Ser-dehyd, Serine dehydratase is a pyri 2e-07
PRK08246310 PRK08246, PRK08246, threonine dehydratase; Provisi 3e-07
PRK06608338 PRK06608, PRK06608, threonine dehydratase; Provisi 7e-07
TIGR01139298 TIGR01139, cysK, cysteine synthase A 1e-05
COG0498411 COG0498, ThrC, Threonine synthase [Amino acid tran 1e-05
PRK07476322 PRK07476, eutB, threonine dehydratase; Provisional 2e-05
TIGR01275318 TIGR01275, ACC_deam_rel, pyridoxal phosphate-depen 3e-05
PRK12483 521 PRK12483, PRK12483, threonine dehydratase; Reviewe 5e-05
PRK08197394 PRK08197, PRK08197, threonine synthase; Validated 6e-05
PRK08813349 PRK08813, PRK08813, threonine dehydratase; Provisi 8e-05
PRK12390337 PRK12390, PRK12390, 1-aminocyclopropane-1-carboxyl 9e-05
PRK08526403 PRK08526, PRK08526, threonine dehydratase; Provisi 1e-04
TIGR01136299 TIGR01136, cysKM, cysteine synthase 1e-04
TIGR03945304 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate bio 4e-04
TIGR02991317 TIGR02991, ectoine_eutB, ectoine utilization prote 5e-04
TIGR01274337 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxy 7e-04
TIGR01127380 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, m 0.002
>gnl|CDD|215333 PLN02618, PLN02618, tryptophan synthase, beta chain Back     alignment and domain information 
 Score =  739 bits (1910), Expect = 0.0
 Identities = 314/366 (85%), Positives = 338/366 (92%), Gaps = 8/366 (2%)

Query: 61  ESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYV 120
            SDP  +QRPD FGRFG+FGGK+VPETLM ALSELE+A + LA D +FQEEL+GIL+DYV
Sbjct: 4   GSDPTGFQRPDSFGRFGKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDYV 63

Query: 121 GRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRII 180
           GRETPLYFAERLTEHY+R +G GP IYLKREDLNHTGAHKINNAV QALLAKRLGK RII
Sbjct: 64  GRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRII 123

Query: 181 AETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLK 240
           AETGAGQHGVATATVCARFGL+CIVYMGAQDMERQALNVFRMRLLGAEVR VHSGTATLK
Sbjct: 124 AETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLK 183

Query: 241 DATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVL 300
           DATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH+VIGKETRRQA+EKWGGKPDVL
Sbjct: 184 DATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVL 243

Query: 301 IACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLL 360
           +ACVGGGSNAMGLFHEF++D+DVRLIGVEAAGFGLDSGKHAATL+KGEVGVLHGA+SYLL
Sbjct: 244 VACVGGGSNAMGLFHEFIDDEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLL 303

Query: 361 QNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLL 420
           Q+EDGQIIEPHSISAGLDYPGVGPEHSFLKD GRAEYY+VTD+EALE         F+ L
Sbjct: 304 QDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEA--------FQRL 355

Query: 421 SRHGGL 426
           SR  G+
Sbjct: 356 SRLEGI 361

Length = 410
>gnl|CDD|235288 PRK04346, PRK04346, tryptophan synthase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit Back     alignment and domain information
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|224269 COG1350, COG1350, Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme Back     alignment and domain information
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated Back     alignment and domain information
>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated Back     alignment and domain information
>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase Back     alignment and domain information
>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|107209 cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia Back     alignment and domain information
>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A Back     alignment and domain information
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed Back     alignment and domain information
>gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated Back     alignment and domain information
>gnl|CDD|236339 PRK08813, PRK08813, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|183494 PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase Back     alignment and domain information
>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein SbnA Back     alignment and domain information
>gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB Back     alignment and domain information
>gnl|CDD|130341 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 439
COG0133396 TrpB Tryptophan synthase beta chain [Amino acid tr 100.0
PRK04346397 tryptophan synthase subunit beta; Validated 100.0
PLN02618410 tryptophan synthase, beta chain 100.0
PRK13028402 tryptophan synthase subunit beta; Provisional 100.0
KOG1395477 consensus Tryptophan synthase beta chain [Amino ac 100.0
PRK13802695 bifunctional indole-3-glycerol phosphate synthase/ 100.0
PRK13803610 bifunctional phosphoribosylanthranilate isomerase/ 100.0
TIGR00263385 trpB tryptophan synthase, beta subunit. Tryptophan 100.0
COG1171347 IlvA Threonine dehydratase [Amino acid transport a 100.0
cd06446365 Trp-synth_B Tryptophan synthase-beta: Trptophan sy 100.0
KOG1251323 consensus Serine racemase [Signal transduction mec 100.0
PRK08526 403 threonine dehydratase; Provisional 100.0
PRK12483 521 threonine dehydratase; Reviewed 100.0
PLN02970328 serine racemase 100.0
PRK08198 404 threonine dehydratase; Provisional 100.0
PRK08639 420 threonine dehydratase; Validated 100.0
PLN02550 591 threonine dehydratase 100.0
PRK06382 406 threonine dehydratase; Provisional 100.0
KOG1250 457 consensus Threonine/serine dehydratases [Amino aci 100.0
TIGR02079 409 THD1 threonine dehydratase. This model represents 100.0
PRK07476322 eutB threonine dehydratase; Provisional 100.0
TIGR01124 499 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, 100.0
PRK06110322 hypothetical protein; Provisional 100.0
cd06447404 D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph 100.0
PRK09224 504 threonine dehydratase; Reviewed 100.0
PRK08638333 threonine dehydratase; Validated 100.0
PRK08813349 threonine dehydratase; Provisional 100.0
PRK06608338 threonine dehydratase; Provisional 100.0
TIGR02991317 ectoine_eutB ectoine utilization protein EutB. Mem 100.0
PRK07048321 serine/threonine dehydratase; Validated 100.0
PRK02991441 D-serine dehydratase; Provisional 100.0
TIGR01127 380 ilvA_1Cterm threonine dehydratase, medium form. A 100.0
TIGR02035431 D_Ser_am_lyase D-serine ammonia-lyase. This family 100.0
PRK08246310 threonine dehydratase; Provisional 100.0
cd06448316 L-Ser-dehyd Serine dehydratase is a pyridoxal phos 100.0
PRK06815317 hypothetical protein; Provisional 100.0
PRK07334 403 threonine dehydratase; Provisional 100.0
PLN02356423 phosphateglycerate kinase 100.0
cd01562304 Thr-dehyd Threonine dehydratase: The first step in 100.0
TIGR01415419 trpB_rel pyridoxal-phosphate dependent TrpB-like e 100.0
PRK08206399 diaminopropionate ammonia-lyase; Provisional 100.0
PLN02565322 cysteine synthase 100.0
PRK10717330 cysteine synthase A; Provisional 100.0
PLN03013429 cysteine synthase 100.0
TIGR01747376 diampropi_NH3ly diaminopropionate ammonia-lyase fa 100.0
TIGR01136299 cysKM cysteine synthases. This model discriminates 100.0
PRK11761296 cysM cysteine synthase B; Provisional 100.0
PRK12391427 tryptophan synthase subunit beta; Reviewed 100.0
PRK07591421 threonine synthase; Validated 100.0
TIGR01139298 cysK cysteine synthase A. This model distinguishes 100.0
TIGR03528396 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem 100.0
COG0031300 CysK Cysteine synthase [Amino acid transport and m 100.0
cd01561291 CBS_like CBS_like: This subgroup includes Cystathi 100.0
TIGR01138290 cysM cysteine synthase B. Alternate name: O-acetyl 100.0
PRK08197394 threonine synthase; Validated 100.0
PRK06381319 threonine synthase; Validated 100.0
PLN00011323 cysteine synthase 100.0
cd01563324 Thr-synth_1 Threonine synthase is a pyridoxal phos 100.0
PLN02556368 cysteine synthase/L-3-cyanoalanine synthase 100.0
PRK06352351 threonine synthase; Validated 100.0
PRK06260397 threonine synthase; Validated 100.0
PRK07409353 threonine synthase; Validated 100.0
PRK06721352 threonine synthase; Reviewed 100.0
PRK06450338 threonine synthase; Validated 100.0
TIGR00260328 thrC threonine synthase. Involved in threonine bio 100.0
PLN02569484 threonine synthase 100.0
TIGR01137 454 cysta_beta cystathionine beta-synthase. Members of 100.0
PRK05638 442 threonine synthase; Validated 100.0
PF00291306 PALP: Pyridoxal-phosphate dependent enzyme; InterP 100.0
TIGR03844398 cysteate_syn cysteate synthase. Members of this fa 100.0
PRK08329347 threonine synthase; Validated 100.0
cd00640244 Trp-synth-beta_II Tryptophan synthase beta superfa 100.0
PRK03910331 D-cysteine desulfhydrase; Validated 100.0
TIGR01275311 ACC_deam_rel pyridoxal phosphate-dependent enzymes 100.0
PRK12390337 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
TIGR01274337 ACC_deam 1-aminocyclopropane-1-carboxylate deamina 100.0
cd06449307 ACCD Aminocyclopropane-1-carboxylate deaminase (AC 100.0
COG0498411 ThrC Threonine synthase [Amino acid transport and 100.0
PRK09225462 threonine synthase; Validated 100.0
KOG1252362 consensus Cystathionine beta-synthase and related 100.0
cd01560460 Thr-synth_2 Threonine synthase catalyzes the final 100.0
COG1350432 Predicted alternative tryptophan synthase beta-sub 100.0
PRK14045329 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
KOG1481391 consensus Cysteine synthase [Amino acid transport 100.0
COG2515323 Acd 1-aminocyclopropane-1-carboxylate deaminase [A 99.88
COG3048443 DsdA D-serine dehydratase [Amino acid transport an 99.87
PF1482179 Thr_synth_N: Threonine synthase N terminus; PDB: 3 95.77
KOG2616266 consensus Pyridoxalphosphate-dependent enzyme/pred 84.95
PF00106167 adh_short: short chain dehydrogenase alcohol dehyd 80.72
PRK13529563 malate dehydrogenase; Provisional 80.64
PTZ00317559 NADP-dependent malic enzyme; Provisional 80.46
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.4e-88  Score=648.59  Aligned_cols=356  Identities=68%  Similarity=1.100  Sum_probs=343.9

Q ss_pred             CCCCCCCCccCCCCccccccccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEE
Q 013596           68 QRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIY  147 (439)
Q Consensus        68 ~~~~~~~~~g~~GG~~vPe~l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~Iy  147 (439)
                      ..||.+|+||.|||+||||+||+.+++|+++|.+...||+|++++..++++|+||||||+.+++|++.+      +++||
T Consensus         1 ~~~~~~g~fG~fGG~yVpE~Lmpal~eLe~ay~~~~~D~~F~~el~~~l~~Y~GRptpLy~a~~Lt~~~------gakiy   74 (396)
T COG0133           1 AYPDEKGYFGEFGGQYVPETLMPALEELEKAYEKAKNDPEFQAELDYLLKDYAGRPTPLYFAERLTEHL------GAKIY   74 (396)
T ss_pred             CCCccCCcccccCCEechHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhh------CceEE
Confidence            368999999999999999999999999999999999999999999999999999999999999999998      79999


Q ss_pred             EEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCC
Q 013596          148 LKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA  227 (439)
Q Consensus       148 lK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA  227 (439)
                      |||||+||||+||+++++.++++|+++||+++|+++++|+||+|.|.+|+++|++|+|||...+++|+..|+.+|+.+||
T Consensus        75 LKREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA  154 (396)
T COG0133          75 LKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGA  154 (396)
T ss_pred             EehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCch
Q 013596          228 EVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGG  307 (439)
Q Consensus       228 ~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~G  307 (439)
                      +|++|..++.+++||+++++++|+.+.++++|+++++.+|||||.||++||.+||.|+..||+++.|..||+||+|||||
T Consensus       155 ~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGG  234 (396)
T COG0133         155 EVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGG  234 (396)
T ss_pred             eEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchh
Q 013596          308 SNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHS  387 (439)
Q Consensus       308 G~~aGi~~~~~~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~  387 (439)
                      +|++|+++.|..+++|++||||+.+.+++++.|+++|..|+++++||+++|++||++||+.+.|||+.|||||++||++.
T Consensus       235 SNAiG~F~~Fi~d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPgVGPeha  314 (396)
T COG0133         235 SNAIGIFHPFIDDESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPGVGPEHA  314 (396)
T ss_pred             cchhhhcccccCCCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCCCChhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEE--chhHHHHHH
Q 013596          388 FLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLS--RHGGLWLLV  430 (439)
Q Consensus       388 ~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~--epagA~a~A  430 (439)
                      ++++..+.+++.|+|+|+++|++.|.+.+ ||+.  |.+-|+++|
T Consensus       315 ~l~~~gRa~y~~itD~EAl~af~~L~r~E-GIIPALESsHAlA~a  358 (396)
T COG0133         315 YLKDIGRAEYVSITDEEALEAFQLLSRLE-GIIPALESSHALAYA  358 (396)
T ss_pred             HHHhcCceeEEecChHHHHHHHHHHHHhc-CcchhhhhHHHHHHH
Confidence            99999999999999999999999886554 8885  444444444

>PRK04346 tryptophan synthase subunit beta; Validated Back     alignment and domain information
>PLN02618 tryptophan synthase, beta chain Back     alignment and domain information
>PRK13028 tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>TIGR00263 trpB tryptophan synthase, beta subunit Back     alignment and domain information
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>PRK12483 threonine dehydratase; Reviewed Back     alignment and domain information
>PLN02970 serine racemase Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08639 threonine dehydratase; Validated Back     alignment and domain information
>PLN02550 threonine dehydratase Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02079 THD1 threonine dehydratase Back     alignment and domain information
>PRK07476 eutB threonine dehydratase; Provisional Back     alignment and domain information
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form Back     alignment and domain information
>PRK06110 hypothetical protein; Provisional Back     alignment and domain information
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia Back     alignment and domain information
>PRK09224 threonine dehydratase; Reviewed Back     alignment and domain information
>PRK08638 threonine dehydratase; Validated Back     alignment and domain information
>PRK08813 threonine dehydratase; Provisional Back     alignment and domain information
>PRK06608 threonine dehydratase; Provisional Back     alignment and domain information
>TIGR02991 ectoine_eutB ectoine utilization protein EutB Back     alignment and domain information
>PRK07048 serine/threonine dehydratase; Validated Back     alignment and domain information
>PRK02991 D-serine dehydratase; Provisional Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase Back     alignment and domain information
>PRK08246 threonine dehydratase; Provisional Back     alignment and domain information
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia Back     alignment and domain information
>PRK06815 hypothetical protein; Provisional Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>PLN02356 phosphateglycerate kinase Back     alignment and domain information
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>PRK08206 diaminopropionate ammonia-lyase; Provisional Back     alignment and domain information
>PLN02565 cysteine synthase Back     alignment and domain information
>PRK10717 cysteine synthase A; Provisional Back     alignment and domain information
>PLN03013 cysteine synthase Back     alignment and domain information
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family Back     alignment and domain information
>TIGR01136 cysKM cysteine synthases Back     alignment and domain information
>PRK11761 cysM cysteine synthase B; Provisional Back     alignment and domain information
>PRK12391 tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>PRK07591 threonine synthase; Validated Back     alignment and domain information
>TIGR01139 cysK cysteine synthase A Back     alignment and domain information
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase Back     alignment and domain information
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>TIGR01138 cysM cysteine synthase B Back     alignment and domain information
>PRK08197 threonine synthase; Validated Back     alignment and domain information
>PRK06381 threonine synthase; Validated Back     alignment and domain information
>PLN00011 cysteine synthase Back     alignment and domain information
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase Back     alignment and domain information
>PRK06352 threonine synthase; Validated Back     alignment and domain information
>PRK06260 threonine synthase; Validated Back     alignment and domain information
>PRK07409 threonine synthase; Validated Back     alignment and domain information
>PRK06721 threonine synthase; Reviewed Back     alignment and domain information
>PRK06450 threonine synthase; Validated Back     alignment and domain information
>TIGR00260 thrC threonine synthase Back     alignment and domain information
>PLN02569 threonine synthase Back     alignment and domain information
>TIGR01137 cysta_beta cystathionine beta-synthase Back     alignment and domain information
>PRK05638 threonine synthase; Validated Back     alignment and domain information
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>TIGR03844 cysteate_syn cysteate synthase Back     alignment and domain information
>PRK08329 threonine synthase; Validated Back     alignment and domain information
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>PRK03910 D-cysteine desulfhydrase; Validated Back     alignment and domain information
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09225 threonine synthase; Validated Back     alignment and domain information
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] Back     alignment and domain information
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis Back     alignment and domain information
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A Back     alignment and domain information
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases Back     alignment and domain information
>PRK13529 malate dehydrogenase; Provisional Back     alignment and domain information
>PTZ00317 NADP-dependent malic enzyme; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
1v8z_A388 X-Ray Crystal Structure Of The Tryptophan Synthase 1e-118
1wdw_B385 Structural Basis Of Mutual Activation Of The Trypto 1e-118
1x1q_A418 Crystal Structure Of Tryptophan Synthase Beta Chain 1e-117
2o2e_A422 Mycobacterium Tuberculosis Tryptophan Synthase Beta 1e-114
1a5a_B397 Cryo-Crystallography Of A True Substrate, Indole-3- 1e-106
1a50_B396 Crystal Structure Of Wild-Type Tryptophan Synthase 1e-106
1ttp_B397 Tryptophan Synthase (E.C.4.2.1.20) In The Presence 1e-106
1k8x_B397 Crystal Structure Of Alphat183v Mutant Of Tryptopha 1e-106
1qop_B396 Crystal Structure Of Wild-type Tryptophan Synthase 1e-106
3pr2_B391 Tryptophan Synthase Indoline Quinonoid Structure Wi 1e-105
1kfe_B394 Crystal Structure Of Alphat183v Mutant Of Tryptopha 1e-105
1k7x_B396 Crystal Structure Of The Beta-Ser178pro Mutant Of T 1e-105
2dh5_A397 Crystal Structure Of E. Coli Holo-Trpb Length = 397 1e-105
1ubs_B397 Tryptophan Synthase (E.C.4.2.1.20) With A Mutation 1e-105
2tys_B397 Crystal Structures Of Mutant (Betak87t) Tryptophan 1e-105
2j9y_B397 Tryptophan Synthase Q114n Mutant In Complex With Co 1e-105
1qoq_B396 Crystal Structure Of Wild-type Tryptophan Synthase 1e-105
1fuy_B396 Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTA 1e-104
2j9z_B397 Tryptophan Synthase T110 Mutant Complex Length = 39 1e-104
1rqx_A338 Crystal Structure Of Acc Deaminase Complexed With I 7e-04
>pdb|1V8Z|A Chain A, X-Ray Crystal Structure Of The Tryptophan Synthase B2 Subunit From Hyperthermophile, Pyrococcus Furiosus Length = 388 Back     alignment and structure 
Iteration: 1

 Score =  423 bits (1087), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/351 (59%), Positives = 259/351 (73%), Gaps = 13/351 (3%)
Query: 84  VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
           VPETL+  L ELE A  +  DD +F  +L+  L+ + GR TPLY+A+RLTE       GG
Sbjct: 11  VPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKI-----GG 65
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
             IYLKREDL H GAHK NNA+GQALLAK +GKTR+IAETGAGQHGVATA   A  G++ 
Sbjct: 66  AKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKV 125
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
            +YMGA+D+ERQ +NVFRM+LLGA V  V+SG+ TLKDA +EA+RDWV   E THY++GS
Sbjct: 126 DIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGS 185
Query: 264 VAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDV 323
           V GPHPYP +VRDF +VIG+E + Q LE  G  PDV++ACVGGGSNAMG+F+ FVNDK V
Sbjct: 186 VVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKV 245
Query: 324 RLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVG 383
           +L+GVEA G GL+SGKH+A+L+ G+VGV HG LSY LQ+E+GQI   HSI+ GLDYPGVG
Sbjct: 246 KLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVG 305
Query: 384 PEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLH 434
           PEH++LK   RAEY  VTD+EAL+         F  LSR  G+   +   H
Sbjct: 306 PEHAYLKKIQRAEYVTVTDEEALKA--------FHELSRTEGIIPALESAH 348
>pdb|1WDW|B Chain B, Structural Basis Of Mutual Activation Of The Tryptophan Synthase A2b2 Complex From A Hyperthermophile, Pyrococcus Furiosus Length = 385 Back     alignment and structure
>pdb|1X1Q|A Chain A, Crystal Structure Of Tryptophan Synthase Beta Chain From Thermus Thermophilus Hb8 Length = 418 Back     alignment and structure
>pdb|2O2E|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta Subunit Dimer (Apoform) Length = 422 Back     alignment and structure
>pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate, Indole-3-Glycerol Phosphate, Bound To A Mutant (Alphad60n) Tryptophan Synthase Alpha2beta2 Complex Reveals The Correct Orientation Of Active Site Alpha Glu 49 Length = 397 Back     alignment and structure
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase Complexed With 5- Fluoroindole Propanol Phosphate Length = 396 Back     alignment and structure
>pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of Cesium, Room Temperature Length = 397 Back     alignment and structure
>pdb|1K8X|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan Synthase From Salmonella Typhimurium Length = 397 Back     alignment and structure
>pdb|1QOP|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase Complexed With Indole Propanol Phosphate Length = 396 Back     alignment and structure
>pdb|3PR2|B Chain B, Tryptophan Synthase Indoline Quinonoid Structure With F9 Inhibitor In Alpha Site Length = 391 Back     alignment and structure
>pdb|1KFE|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan Synthase From Salmonella Typhimurium With L-ser Bound To The Beta Site Length = 394 Back     alignment and structure
>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of Tryptophan Synthase Length = 396 Back     alignment and structure
>pdb|2DH5|A Chain A, Crystal Structure Of E. Coli Holo-Trpb Length = 397 Back     alignment and structure
>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys 87->thr In The B Subunit And In The Presence Of Ligand L-Serine Length = 397 Back     alignment and structure
>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan Synthase Alpha2 Beta2 Complex With Ligands Bound To The Active Sites Of The Alpha And Beta Subunits Reveal Ligand-Induced Conformational Changes Length = 397 Back     alignment and structure
>pdb|2J9Y|B Chain B, Tryptophan Synthase Q114n Mutant In Complex With Compound Ii Length = 397 Back     alignment and structure
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase Complexed With Indole Glycerol Phosphate Length = 396 Back     alignment and structure
>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF TRYPTOPHAN Synthase Complexed With 5-Fluoro-Indole-Propanol Phosphate Length = 396 Back     alignment and structure
>pdb|2J9Z|B Chain B, Tryptophan Synthase T110 Mutant Complex Length = 397 Back     alignment and structure
>pdb|1RQX|A Chain A, Crystal Structure Of Acc Deaminase Complexed With Inhibitor Length = 338 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
1x1q_A418 Tryptophan synthase beta chain; structural genomic 0.0
1qop_B396 Tryptophan synthase beta chain; lyase, carbon-oxyg 0.0
2o2e_A422 Tryptophan synthase beta chain; amino-acid biosynt 0.0
1v8z_A388 Tryptophan synthase beta chain 1; beta+alpha, rike 0.0
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 5e-57
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 6e-31
2d1f_A360 Threonine synthase; amino acid synthesis, pyridoxa 3e-16
2zsj_A352 Threonine synthase; PLP dependent enzyme, lyase; H 2e-15
1p5j_A372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 4e-15
4d9i_A398 Diaminopropionate ammonia-lyase; fold type II PLP- 5e-15
3aey_A351 Threonine synthase; PLP, pyridoxal phosphate, lyas 7e-15
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 2e-14
2rkb_A318 Serine dehydratase-like; PLP bound enzyme, enzyme 2e-13
1e5x_A486 Threonine synthase; threonine biosynthesis, PLP en 3e-13
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 5e-11
1ve5_A311 Threonine deaminase; riken structural genomics/Pro 2e-10
3iau_A366 Threonine deaminase; pyridoxal phosphate, amino-ac 2e-10
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 2e-10
3ss7_X442 D-serine dehydratase; type II fold, ALFA,beta-elim 3e-09
2gn0_A342 Threonine dehydratase catabolic; TDCB, biodegradat 1e-08
1v71_A323 Serine racemase, hypothetical protein C320.14 in c 1e-08
3l6b_A346 Serine racemase; pyridoxal phosphate, PLP, isomera 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 3e-04
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Length = 418 Back     alignment and structure
 Score =  716 bits (1851), Expect = 0.0
 Identities = 227/373 (60%), Positives = 277/373 (74%), Gaps = 15/373 (4%)

Query: 55  PMEAKKESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSG 114
               +       +  PD  GRFG +GG++VPETL+ AL ELE+A  +   D  F EEL  
Sbjct: 9   AFRERSMLTLPDFPLPDARGRFGPYGGRYVPETLIPALEELEAAYREAKKDPAFLEELDH 68

Query: 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRL 174
            LR + GR TPLY A+RL+E++     GG  ++LKREDL HTGAHKINN +GQALLA+R+
Sbjct: 69  YLRQFAGRPTPLYHAKRLSEYW-----GGAQVFLKREDLLHTGAHKINNTLGQALLARRM 123

Query: 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234
           GK R+IAETGAGQHGV+ ATV A FGL+C+VYMG +D+ RQALNVFRM+LLGAEVR V +
Sbjct: 124 GKRRVIAETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAA 183

Query: 235 GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWG 294
           G+ TLKDAT+EAIRDW+TNV TT YILGSV GPHPYPMMVRDF +VIG+E +RQ+LE +G
Sbjct: 184 GSRTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQSVIGEEVKRQSLELFG 243

Query: 295 GKPDVLIACVGGGSNAMGLFHEF--VNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVL 352
             PD LIA VGGGSNA+GLF  F  + +   +LIGVEAAG GL +G+HAA++  G+ GVL
Sbjct: 244 RLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGVL 303

Query: 353 HGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLY 412
           HG+  YLL + DGQI   HS+SAGLDYPGVGPEHS+  D G AEY +VTD+EALEG    
Sbjct: 304 HGSYMYLLYDHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVAEYASVTDEEALEG---- 359

Query: 413 LILPFKLLSRHGG 425
               FKLL+R  G
Sbjct: 360 ----FKLLARLEG 368
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Length = 396 Back     alignment and structure
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Length = 422 Back     alignment and structure
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Length = 388 Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338 Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Length = 341 Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360 Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352 Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372 Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398 Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351 Back     alignment and structure
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Length = 342 Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318 Back     alignment and structure
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486 Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Length = 325 Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311 Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366 Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514 Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442 Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323 Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
2o2e_A422 Tryptophan synthase beta chain; amino-acid biosynt 100.0
1x1q_A418 Tryptophan synthase beta chain; structural genomic 100.0
1qop_B396 Tryptophan synthase beta chain; lyase, carbon-oxyg 100.0
1v8z_A388 Tryptophan synthase beta chain 1; beta+alpha, rike 100.0
3l6b_A346 Serine racemase; pyridoxal phosphate, PLP, isomera 100.0
2gn0_A342 Threonine dehydratase catabolic; TDCB, biodegradat 100.0
3ss7_X442 D-serine dehydratase; type II fold, ALFA,beta-elim 100.0
1wkv_A389 Cysteine synthase; homodimer, open alpha/beta fold 100.0
1ve5_A311 Threonine deaminase; riken structural genomics/Pro 100.0
1v71_A323 Serine racemase, hypothetical protein C320.14 in c 100.0
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 100.0
4h27_A364 L-serine dehydratase/L-threonine deaminase; PLP de 100.0
3vc3_A344 Beta-cyanoalnine synthase; beta-cyanoalanine synth 100.0
1p5j_A372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 100.0
2rkb_A318 Serine dehydratase-like; PLP bound enzyme, enzyme 100.0
3iau_A366 Threonine deaminase; pyridoxal phosphate, amino-ac 100.0
4d9i_A398 Diaminopropionate ammonia-lyase; fold type II PLP- 100.0
3tbh_A334 O-acetyl serine sulfhydrylase; cysteine synthase, 100.0
1vb3_A428 Threonine synthase; PLP-dependent enzyme, lyase; H 100.0
1y7l_A316 O-acetylserine sulfhydrylase, O-acetylserine (thio 100.0
4aec_A430 Cysteine synthase, mitochondrial; lyase, cysteine 100.0
1ve1_A304 O-acetylserine sulfhydrylase; PLP, transferase, ri 100.0
1z7w_A322 Cysteine synthase; transferase; HET: PLP; 2.20A {A 100.0
3dwg_A325 Cysteine synthase B; sulfur carrier protein comple 100.0
2q3b_A313 Cysteine synthase A; pyridoxal-5'-phosphate, sulph 100.0
2egu_A308 Cysteine synthase; O-acetylserine sulfhydrase, str 100.0
2pqm_A343 Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 100.0
2d1f_A360 Threonine synthase; amino acid synthesis, pyridoxa 100.0
2v03_A303 Cysteine synthase B; pyridoxal phosphate, cysteine 100.0
1jbq_A435 B, cystathionine beta-synthase, serine sulfhydrase 100.0
3aey_A351 Threonine synthase; PLP, pyridoxal phosphate, lyas 100.0
2zsj_A352 Threonine synthase; PLP dependent enzyme, lyase; H 100.0
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 100.0
1o58_A303 O-acetylserine sulfhydrylase; TM0665, structural g 100.0
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 100.0
1e5x_A486 Threonine synthase; threonine biosynthesis, PLP en 100.0
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 100.0
4f4f_A468 Threonine synthase; structural genomics, niaid, na 100.0
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 100.0
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 100.0
3v7n_A487 Threonine synthase; ssgcid, structural genomics, s 100.0
1kl7_A514 Threonine synthase; threonine synthesis, pyridoxal 100.0
1vp8_A201 Hypothetical protein AF0103; putative pyruvate kin 89.78
3pi7_A349 NADH oxidoreductase; groes-like fold, NAD(P)-bindi 82.45
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Back     alignment and structure
Probab=100.00  E-value=1.3e-69  Score=561.30  Aligned_cols=361  Identities=56%  Similarity=0.965  Sum_probs=260.8

Q ss_pred             CCCCCCCCccC---CCCccccccccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCC
Q 013596           68 QRPDVFGRFGR---FGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGP  144 (439)
Q Consensus        68 ~~~~~~~~~g~---~GG~~vPe~l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~  144 (439)
                      ..||.+|+||.   |||+|+||+++++++||+++|+++..|++|++++..++.+++|++|||+++++|++.+     ++.
T Consensus        23 ~~~~~~~~~~~~~~~gg~~~pe~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~g~~TPL~~~~~Ls~~~-----gg~   97 (422)
T 2o2e_A           23 HDPDSGGHFGGPSGWGGRYVPEALMAVIEEVTAAYQKERVSQDFLDDLDRLQANYAGRPSPLYEATRLSQHA-----GSA   97 (422)
T ss_dssp             ------------------CCCGGGHHHHHHHHHHHHHHHTSTHHHHHHHHHTTTTSSCSCCEEECGGGGGGT-----TTC
T ss_pred             cCCCcCCCCCCCCCcCCccCCHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCeEEChhhHhhc-----CCC
Confidence            46899999999   9999999999999999999999999999999999999999999999999999999987     368


Q ss_pred             eEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHH
Q 013596          145 HIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL  224 (439)
Q Consensus       145 ~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~  224 (439)
                      +||+|+|++|||||||+|+++++++.+++.|++++|+++|+||||+|+|++|+++|++|+||||+.++++++.|+++|+.
T Consensus        98 ~i~lK~E~lnptGSfK~R~a~~~~~~a~~~g~~~vI~~~ssGNhG~A~A~aaa~~G~~~~I~mp~~~~~~q~~kv~~~~~  177 (422)
T 2o2e_A           98 RIFLKREDLNHTGSHKINNVLGQALLARRMGKTRVIAETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRL  177 (422)
T ss_dssp             EEEEECGGGCCSSTTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHSHHHHHHHHH
T ss_pred             eEEEEEcCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEecCccHHHHHHHHHHHHcCCcEEEEeCCCcchhhHHHHHHHHH
Confidence            99999999999999999999999999998898888888999999999999999999999999999765556789999999


Q ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcC
Q 013596          225 LGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACV  304 (439)
Q Consensus       225 ~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpv  304 (439)
                      +||+|+.++.+.++++++++++.+.+.++..+.+|+++|++|+|||+.+++.+|.++|.|+.+|+.++.+..||+||+|+
T Consensus       178 ~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~yi~~s~~g~~p~~~~v~~~q~t~g~Ei~~Ql~~~~~~~pD~vvvpv  257 (422)
T 2o2e_A          178 LGAEVVAVQTGSKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACV  257 (422)
T ss_dssp             TTCEEEEECSTTSCHHHHHHHHHHHHHHHTTTEEECCCCSSSCCCCHHHHHHHTTHHHHHHHHHHHHHSSSCCSEEEEEG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEcc
Confidence            99999999865568999999888877776566789999999999998888889999999999999888776799999999


Q ss_pred             CchHHHHHHHHHHhcCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCC
Q 013596          305 GGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGP  384 (439)
Q Consensus       305 G~GG~~aGi~~~~~~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~  384 (439)
                      |+|||++|++.+++.+|.+|||||||++++++++.++++|..|+++++||...+.+++++|++..++||++||+++++|+
T Consensus       258 G~GG~~~Gi~~~~~~~p~v~vigVe~~g~~~~~~~~~~~l~~g~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~  337 (422)
T 2o2e_A          258 GGGSNAIGIFHAFLDDPGVRLVGFEAAGDGVETGRHAATFTAGSPGAFHGSFSYLLQDEDGQTIESHSISAGLDYPGVGP  337 (422)
T ss_dssp             GGHHHHHTTSGGGTTCTTCEEEEEEECC----------------------------------------------------
T ss_pred             CCchhHHHHHHHHhcCCCCeEEEEecCCCcccchhHHHHHHcCCceeccccchhhcccccccccCCceeecccCCCCCCH
Confidence            99999999988887789999999999998655567889999999999999999999999999989999999999999998


Q ss_pred             chhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHh
Q 013596          385 EHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLH  434 (439)
Q Consensus       385 ~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~  434 (439)
                      .+.++.+..++++++|+|+|+++|+++|+.. ++++++++++.++|+++.
T Consensus       338 ~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~-eGi~~~~esa~A~a~a~~  386 (422)
T 2o2e_A          338 EHAWLKEAGRVDYRPITDSEAMDAFGLLCRM-EGIIPAIESAHAVAGALK  386 (422)
T ss_dssp             ---------CCEEEEECHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCeeEEEECHHHHHHHHHHHHHH-cCCccCchHHHHHHHHHH
Confidence            8777777778999999999999999988644 489988888888887654
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Back     alignment and structure
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Back     alignment and structure
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Back     alignment and structure
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* Back     alignment and structure
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Back     alignment and structure
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* Back     alignment and structure
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Back     alignment and structure
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Back     alignment and structure
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Back     alignment and structure
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Back     alignment and structure
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* Back     alignment and structure
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Back     alignment and structure
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Back     alignment and structure
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Back     alignment and structure
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Back     alignment and structure
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Back     alignment and structure
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Back     alignment and structure
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Back     alignment and structure
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Back     alignment and structure
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Back     alignment and structure
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} Back     alignment and structure
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 Back     alignment and structure
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2 Back     alignment and structure
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 439
d1v8za1386 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun 1e-108
d1qopb_390 c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S 1e-108
d1tyza_338 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 3e-33
d1tdja1331 c.79.1.1 (A:5-335) Threonine deaminase {Escherichi 2e-32
d1o58a_293 c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei 1e-30
d1f2da_341 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 2e-30
d1jbqa_355 c.79.1.1 (A:) Cystathionine beta-synthase {Human ( 5e-25
d1v71a1318 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S 1e-24
d1j0aa_325 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 3e-20
d1ve1a1302 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C 7e-20
d1ve5a1310 c.79.1.1 (A:2-311) Threonine deaminase {Thermus th 7e-19
d1e5xa_477 c.79.1.1 (A:) Threonine synthase {Mouse-ear cress 7e-19
d1fcja_302 c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei 8e-19
d2bhsa1292 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C 1e-16
d1v7ca_351 c.79.1.1 (A:) Threonine synthase {Thermus thermoph 7e-16
d1wkva1382 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C 4e-15
d1p5ja_319 c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa 1e-14
d1z7wa1320 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C 1e-13
d1y7la1310 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C 7e-13
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  323 bits (828), Expect = e-108
 Identities = 209/336 (62%), Positives = 258/336 (76%), Gaps = 5/336 (1%)

Query: 76  FGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEH 135
           FG FGG++VPETL+  L ELE A  +  DD +F  +L+  L+ + GR TPLY+A+RLTE 
Sbjct: 3   FGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEK 62

Query: 136 YRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATV 195
                 GG  IYLKREDL H GAHK NNA+GQALLAK +GKTR+IAETGAGQHGVATA  
Sbjct: 63  I-----GGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMA 117

Query: 196 CARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVE 255
            A  G++  +YMGA+D+ERQ +NVFRM+LLGA V  V+SG+ TLKDA +EA+RDWV   E
Sbjct: 118 GALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFE 177

Query: 256 TTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFH 315
            THY++GSV GPHPYP +VRDF +VIG+E + Q LE  G  PDV++ACVGGGSNAMG+F+
Sbjct: 178 YTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFY 237

Query: 316 EFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISA 375
            FVNDK V+L+GVEA G GL+SGKH+A+L+ G+VGV HG LSY LQ+E+GQI   HSI+ 
Sbjct: 238 PFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAP 297

Query: 376 GLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKL 411
           GLDYPGVGPEH++LK   RAEY  VTD+EAL+    
Sbjct: 298 GLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHE 333
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390 Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331 Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293 Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 Back     information, alignment and structure
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355 Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318 Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302 Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310 Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477 Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302 Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292 Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351 Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382 Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319 Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320 Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
d1qopb_390 Tryptophan synthase, beta-subunit {Salmonella typh 100.0
d1v8za1386 Tryptophan synthase, beta-subunit {Archaeon Pyroco 100.0
d1ve5a1310 Threonine deaminase {Thermus thermophilus [TaxId: 100.0
d1p5ja_319 L-serine dehydratase {Human (Homo sapiens) [TaxId: 100.0
d1v71a1318 Hypothetical protein C320.14 (SPCC320.14, SPCC330. 100.0
d1tdja1331 Threonine deaminase {Escherichia coli [TaxId: 562] 100.0
d1jbqa_355 Cystathionine beta-synthase {Human (Homo sapiens) 100.0
d1z7wa1320 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1o58a_293 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d2bhsa1292 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1ve1a1302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1y7la1310 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1fcja_302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1wkva1382 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1v7ca_351 Threonine synthase {Thermus thermophilus [TaxId: 2 100.0
d1e5xa_477 Threonine synthase {Mouse-ear cress (Arabidopsis t 100.0
d1j0aa_325 1-aminocyclopropane-1-carboxylate deaminase {Archa 100.0
d1tyza_338 1-aminocyclopropane-1-carboxylate deaminase {Pseud 100.0
d1vb3a1428 Threonine synthase {Escherichia coli [TaxId: 562]} 100.0
d1f2da_341 1-aminocyclopropane-1-carboxylate deaminase {Yeast 99.98
d1kl7a_511 Threonine synthase {Baker's yeast (Saccharomyces c 99.95
d1e3ja2170 Ketose reductase (sorbitol dehydrogenase) {Silverl 93.16
d1vp8a_190 Hypothetical protein AF0103 {Archaeoglobus fulgidu 92.12
d1pl8a2171 Ketose reductase (sorbitol dehydrogenase) {Human ( 90.27
d1v3va2182 Leukotriene b4 12-hydroxydehydrogenase/prostagland 87.89
d1qora2179 Quinone oxidoreductase {Escherichia coli [TaxId: 5 86.0
d1llua2166 Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax 85.96
d1vj0a2182 Hypothetical protein TM0436 {Thermotoga maritima [ 85.92
d1t57a_186 Hypothetical protein MTH1675 {Methanobacterium the 84.71
d1piwa2168 Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas 83.64
d1rjwa2168 Alcohol dehydrogenase {Bacillus stearothermophilus 83.64
d3etja278 N5-carboxyaminoimidazole ribonucleotide synthetase 82.67
d1o8ca277 Hypothetical protein YhdH {Escherichia coli [TaxId 82.53
d1f8fa2174 Benzyl alcohol dehydrogenase {Acinetobacter calcoa 82.4
d1jvba2170 Alcohol dehydrogenase {Archaeon Sulfolobus solfata 82.05
d1iz0a2171 Quinone oxidoreductase {Thermus thermophilus [TaxI 81.53
d1ja9a_259 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl 80.23
d1pqwa_183 Putative enoyl reductase domain of polyketide synt 80.17
d1yb5a2174 Quinone oxidoreductase {Human (Homo sapiens) [TaxI 80.16
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.2e-70  Score=561.28  Aligned_cols=356  Identities=53%  Similarity=0.892  Sum_probs=334.5

Q ss_pred             CCCCccCCCCccccccccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeC
Q 013596           72 VFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKRE  151 (439)
Q Consensus        72 ~~~~~g~~GG~~vPe~l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E  151 (439)
                      .|||||+|||+||||+||+.|+||+++|++.++|++|++|++.++++|+||||||+++++|++.+      +++||+|+|
T Consensus         4 ~~~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~~grpTPL~~~~~Ls~~l------g~~IylK~E   77 (390)
T d1qopb_           4 LNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGT------RTTLYLKRE   77 (390)
T ss_dssp             SCCEETTEEEEESCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHTTS------SEEEEEEEG
T ss_pred             CCCcccCcCCEeCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCchhhEhHhhhhhh------CCEEEEEEe
Confidence            48999999999999999999999999999999999999999999999999999999999999987      899999999


Q ss_pred             CCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596          152 DLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA  231 (439)
Q Consensus       152 ~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~  231 (439)
                      ++|||||||||++.+++..+++.|++++|+++|+||||+++|++|+++|++|+||||+.++.++..|+.+|+.|||+|+.
T Consensus        78 ~lnptGS~K~R~a~~~i~~A~~~G~~~iv~easaGN~g~a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~  157 (390)
T d1qopb_          78 DLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIP  157 (390)
T ss_dssp             GGSTTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEE
T ss_pred             cCCcccccchhHHHHHHHHHhhcCCceeeeehhHHHHHHHHHHHHHhccCceEEeecccccccchHHHHHHHhcCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999998777677899999999999999


Q ss_pred             EcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHH
Q 013596          232 VHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAM  311 (439)
Q Consensus       232 v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~a  311 (439)
                      ++.+..+++++..++.+++....+..+|.+++..+++||+.+++.+|.++|.|+.+|+.++.+..||+||+|+|||++++
T Consensus       158 v~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~  237 (390)
T d1qopb_         158 VHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAI  237 (390)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHH
T ss_pred             ecCCchhhhHhHHHHHHHHhhhhhhhhhccccccccccccccccchhhhhcchhHHHHHHHcCCccceEEecccccchhh
Confidence            99888899999999999998888888999999999999999999999999999999988888888999999999999999


Q ss_pred             HHHHHHhcCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhh
Q 013596          312 GLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKD  391 (439)
Q Consensus       312 Gi~~~~~~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~  391 (439)
                      |++.+|+..+.+++++++|.+.+.++..+.+.+..|.++..|+..++.+++.+|+...+++++.|++++++++.+.++.+
T Consensus       238 G~~~~f~~~~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~~~~~~~~~~g~~~~~~s~a~gl~~~~~~~~~~~l~~  317 (390)
T d1qopb_         238 GMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNS  317 (390)
T ss_dssp             HHHGGGTTCTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHH
T ss_pred             heecccccccceeEeccccccccccccccccccccCcccccccccccccccCCCccccccccccccccccchhHHHHHHh
Confidence            99999998899999999999988777778889999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHh
Q 013596          392 EGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLH  434 (439)
Q Consensus       392 ~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~  434 (439)
                      ..+++++.|+|+|+++|+++|+..+ ||+.+++++.|+|+++.
T Consensus       318 ~g~~~~~~vtD~Ea~~a~~~La~~E-GI~~a~Esa~Ava~Ai~  359 (390)
T d1qopb_         318 IGRADYVSITDDEALEAFKTLCRHE-GIIPALESSHALAHALK  359 (390)
T ss_dssp             TTSSEEEEEEHHHHHHHHHHHHHHH-SCCBCHHHHHHHHHHHH
T ss_pred             cCceEEEEECHHHHHHHHHHHHHhc-CCeecCchHHHHHHHHH
Confidence            9999999999999999999997555 99976666666666554
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Back     information, alignment and structure
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Back     information, alignment and structure
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Back     information, alignment and structure
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Back     information, alignment and structure
>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Back     information, alignment and structure
>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure