Citrus Sinensis ID: 013598

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MEHELAVLQQQERMINVGTVSPFDSASLLPPKKLNLALPNPLYPFISKNAMFVSSPQQTQQARLGFKTIHNGLSLLCVSAVKNKWIKGGSEVVESDGSDSDDFDDFDEDDADNDEDEGMMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSSNSVDGHSSDDTSGYPKIKVYGFEEDPGAHFDDNEDSYGSVMEALSDGFEPDDELDFAELEEVREDLEFVTVSELNGSNNTKPAKKSATDSSSANQRKKIQAIEKKLTAKGKVKKVPKLNIPGSAKRLKVKEKAVLTEVFSKYAVKAASTAKEGN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccEEEEccccEEEEHHHHHccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEcccccccccccHHHHHcccccEEEEEccccccccccccccccEEEEEcccHHHHHHHHHHccccEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHccccEEcccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccccccccccccHHHccccccccccHcccccccccccccccccHccccEEccccEEEEEEEEccccccccHHHEcccccccccccccccccccccccccccccHHHHHHHHHccccccccccEccccHHHHHHHHHHHcHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHcccccEEEEEEcccccccccccccccEEEEEcccHHHHHHHHHHHcccEEEEEEEEEcEEEEEEccccccccccccccccccccccccccccccccHcccccccccccHHHHHcccccccccccHHHHHHHcccHHHccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MEHELAVLQQQERMinvgtvspfdsasllppkklnlalpnplypfisknamfvsspqqTQQARLGFKTIHNGLSLLCVSAVKNKwikggsevvesdgsdsddfddfdeddadndedegmMISFGKMRRWlenkprgfgegkvydTSIEDKLLQEIQQSREAQMANINKLENellkpspkkdepkkkepedmpsgIRVRLlnlpkkkniHRDLKSafkgvpgiiniipvvsgnkktkdpickgfafvdfeseDYATRFVQLFSRQIIAFGKVQKQIRCemvnssssnsvdghssddtsgypkikvygfeedpgahfddnedsyGSVMEAlsdgfepddeldFAELEEVREDLEFVTVSelngsnntkpakksatdsssANQRKKIQAIEKKLTakgkvkkvpklnipgsakrlKVKEKAVLTEVFSKYAVKAASTAKEGN
Flexible Loop (DISEMBL)
MEHELAVLQQQERMINVGTVSPFDSASLLPPKKLNLALPNPLYPFISKNAMFVSSPQQTQQARLGFKTIHNGLSLLCVSAVKNKWIKGGSevvesdgsdsddfDDFDEDDADNDEDEGMMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKlenellkpspkkdepkkkepedmpsgirvrllnlpkkknIHRDlksafkgvpgiiniipvvsgnkktkdPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVnssssnsvdghssddtsgYPKIKVYGFEEDPGAHFDDNEDSYGSVMEALSDGFEPDDELDFAELEEVREDLEFVTvselngsnntkpakksatdsssanqrKKIQAIEkkltakgkvkkvpklnipgsakrlkvkekavlTEVFSKyavkaastakegn
Low Complexity Region (SEG)
MEHELAVLQQQERMINVGTVSPFDsasllppkklnlalpnplYPFISKNAMFVSSPQQTQQARLGFKTIHNGLSLLCVSAVKNKWIKggsevvesdgsdsddfddfdeddadndedegMMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENellkpspkkdepkkkepedMPSGIRVRLLNLPKKKNIHRDLKSAFKgvpgiiniipvvsgnKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMvnssssnsvdghssddTSGYPKIKVYGFEEDPGAHFDDNEDSYGSVMEALSDGFEPDDELDFAELEEVREDLEFVTVSELNGSNNTKPAKKSATDSSSANQRKKIQAIEkkltakgkvkkvpklNIPGSAKRLKVKEKAVLTEVFSKYAVKAASTAKEGN
Disordered region (IsUnstruct)
****************VGT********LL*PKKLNLALPNPLYPFISKNAMFVS******QARLGFKTIHNGLSLLCVSAVKNKWIKG***************************************RWL***********VY*****************************************************VRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRC**************************VY************************************************************************************************************VKEKAVLTEVFSKYAV**********
Disordered Region (DISOPRED)
***ELAV*QQQERMINVGTVSPFDSASLLPPKKLNLALPNPLYPFISKNAMFVSSPQQTQQARLGFKTIHNGLSLLCVSA*************************FDEDDADNDEDEGMMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLL***************************************PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCE**************************************************************************************************************************************KVKEKAVLTEVFSKYAV**********
Disordered Region (DISEMBL)
MEHELAVLQQQERMINVGTVSPFDSASLLPPKKLNLALPNPLYPFISKNAMFV********ARLGFKTIHNGLSLLCVSAVKNKWIKGGS**********DDFDDFDEDDADNDEDEGMMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKP**************MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMV***************TSGYPKIKVYGFEEDPGAHFDDNEDSYGSVMEALSDGFEPDDELDFAELEEVREDLEFVTVSELNG*********************KIQAIEKKLTAKGKVKKVPKLNIPGSAKRLKVKEKAVLTEVFSKYAVK*********
Disordered Region (DISPRO)
**HELAVLQQQERMINVGTVSPFDSASLLPPKKLNLALPNPLYPFISKNAMFVSSPQQTQQARLGFKTIHNGLSLLCVSAVKNK*********************FDEDDADNDEDEGMMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQM**************************DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNS******************************************************DELDFAELEEVRED***V***************************K******KK*******KKVPKLNIPGSAKRLKVKEKAVLTEVFSKYAVKAAST*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEHELAVLQQQERMINVGTVSPFDSASLLPPKKLNLALPNPLYPFISKNAMFVSSPQQTQQARLGFKTIHNGLSLLCVSAVKNKWIKGGSEVVESDGSDSDDFDDFDEDDADNDEDEGMMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLxxxxxxxxxxxxxxxxxxxxxLLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSSNSVDGHSSDDTSGYPKIKVYGFEEDPGAHFDDNEDSYGSVMEALSDGFEPDDELDFAELEEVREDLEFVTVSELNGSNNTKPAKKSATDSSSANQRKKIQAIEKKLTAKGKVKKVPKLNIPGSAKRLKVKEKAVLTEVFSKYAVKAASTAKEGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
255581196	500	conserved hypothetical protein [Ricinus	0.706	0.62	0.533	3e-84
224099707	402	predicted protein [Populus trichocarpa]	0.653	0.713	0.527	8e-73
356497793	446	PREDICTED: uncharacterized protein LOC10	0.681	0.670	0.452	3e-67
356501987	325	PREDICTED: uncharacterized protein LOC10	0.671	0.907	0.439	1e-64
357486079	423	RNA recognition motif (RRM)-containing p	0.694	0.721	0.467	9e-64
449452096	421	PREDICTED: uncharacterized protein LOC10	0.865	0.902	0.382	1e-59
296086503	304	unnamed protein product [Vitis vinifera]	0.571	0.825	0.496	3e-58
449485933	421	PREDICTED: uncharacterized LOC101210443	0.870	0.907	0.374	4e-57
30698005	538	RNA recognition motif-containing protein	0.455	0.371	0.534	2e-48
297841757	537	hypothetical protein ARALYDRAFT_894820 [	0.371	0.303	0.621	3e-48

>gi|255581196|ref|XP_002531411.1| conserved hypothetical protein [Ricinus communis] gi|223529004|gb|EEF30995.1| conserved hypothetical protein [Ricinus communis]

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 168/315 (53%), Positives = 219/315 (69%), Gaps = 5/315 (1%)

Query: 119 MMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSP 178
           M++ FGKM++WLENKPRGFGEGKVYDT +EDKLL+EI+QSR+AQ AN++ L+N  +KP+ 
Sbjct: 128 MLLPFGKMKKWLENKPRGFGEGKVYDTFVEDKLLEEIEQSRKAQAANLDTLKNNPVKPAS 187

Query: 179 KKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDP 238
           +KD  K K  E +PSGIRVR++NLPKK+NIHRDL+ AFK VPG++NI P VSGNKKTKDP
Sbjct: 188 EKDGQKNKVAEVIPSGIRVRIINLPKKRNIHRDLQLAFKEVPGVVNIFPAVSGNKKTKDP 247

Query: 239 ICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSSNSVDGHSSDDTSG 298
           +CKGFAFVDF+SE+ A RFVQ FS Q I FG++QKQI+C M N  SSNS D  S+     
Sbjct: 248 VCKGFAFVDFKSEEDADRFVQQFSGQSIVFGRIQKQIKCMMTNGHSSNSSDDESASSFYS 307

Query: 299 YPKIKVYGFEEDPGAHFDDNEDSYGSVMEALSDGFEPD-DELDFAELEEVREDLEFVTVS 357
              + V   E D     D N D   S  E  S     D DEL   +L++V + LE  ++S
Sbjct: 308 DSNLTVPALEAD----IDANADMDDSCSEETSSDVPDDMDELRTEKLKDVTDSLESFSIS 363

Query: 358 ELNGSNNTKPAKKSATDSSSANQRKKIQAIEKKLTAKGKVKKVPKLNIPGSAKRLKVKEK 417
           + +  +  +   K  T + S  ++ K +A +KK+  K   +K PKL IPGSAKRLK++EK
Sbjct: 364 DSDTGDIVQAIVKPTTGAFSQKKQDKRRATKKKVRPKATAEKAPKLEIPGSAKRLKIREK 423

Query: 418 AVLTEVFSKYAVKAA 432
           AVLT+VFSKY  ++A
Sbjct: 424 AVLTDVFSKYGSQSA 438

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099707|ref|XP_002311586.1| predicted protein [Populus trichocarpa] gi|222851406|gb|EEE88953.1| predicted protein [Populus trichocarpa]

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 161/305 (52%), Positives = 207/305 (67%), Gaps = 18/305 (5%)

Query: 120 MISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPK 179
            + FGKM++WLE +PRGFG  KVYDT +EDKLL+EI+QSR AQ ANIN L+        K
Sbjct: 103 FMPFGKMKKWLETRPRGFGGSKVYDTRVEDKLLEEIEQSRLAQAANINNLKYPNPAAPNK 162

Query: 180 KDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPI 239
                K  P+ +P+GIRV ++NLPKKKNIHRDLK+AFK V GIINIIP VSGNKKTKDPI
Sbjct: 163 THHQAKNAPDVIPTGIRVHVINLPKKKNIHRDLKTAFKDVQGIINIIPAVSGNKKTKDPI 222

Query: 240 CKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEM-------------VNSSSSN 286
           CKGFAFVDF+SE+ A RFVQ FS+Q IAFGK+QKQI+CEM               S +S+
Sbjct: 223 CKGFAFVDFKSEEDAARFVQQFSKQSIAFGKIQKQIKCEMKKSSSLSSSDDESAGSFASD 282

Query: 287 SVDGHSSDDTSGYPKIKVYGFEEDPGAHFDDNEDSYGSVMEALSDGFEPDDELDFAELEE 346
                  DD+   P +     E +  A F   +DS+  + E +SD FE DD LD  ELE+
Sbjct: 283 ISKSDGMDDSFDDPLLMNSVTEGERNADF-KMDDSF--LEETVSDIFESDD-LD-EELED 337

Query: 347 VREDLEFVTVSELNGSNNTKPAKKSATDSSSANQRKKIQAIEKKLTAKGKVKKVPKLNIP 406
           + E++E V+ S+L+  ++++P  ++ATDS S  ++ K +A +KK+ AKG  KKVPKL IP
Sbjct: 338 ITENVESVSKSDLSSYDSSEPRMEAATDSLSPKKQHKKRASKKKIIAKGGAKKVPKLAIP 397

Query: 407 GSAKR 411
           GSAKR
Sbjct: 398 GSAKR 402

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497793|ref|XP_003517742.1| PREDICTED: uncharacterized protein LOC100776108 [Glycine max]

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 158/349 (45%), Positives = 216/349 (61%), Gaps = 50/349 (14%)

Query: 120 MISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPK 179
           M+S  KM +W E KPRGFGEGKVYDTS+EDKLL+E++QSR AQ  N+ KL +  +K +  
Sbjct: 116 MLSLEKMNKWFEKKPRGFGEGKVYDTSVEDKLLEEMRQSRIAQAENLKKLMSNPVKHASN 175

Query: 180 KDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPI 239
           +   KKK+ E +P G RV L+NLPKKKNIH+DLKSA +G+PGIINI+P V+GNKKT+DPI
Sbjct: 176 ESVQKKKDAELVPIGGRVCLVNLPKKKNIHKDLKSALQGIPGIINIVPAVTGNKKTRDPI 235

Query: 240 CKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSSNSVDGHSSDDTSGY 299
           CKGFA+VDF+ E+ A RFV+L++ Q I FGK+QKQI+CE++N  SS+S+    +   +  
Sbjct: 236 CKGFAYVDFKREEDAVRFVELYTGQTITFGKIQKQIKCELLNVQSSSSLKLSKNLSAA-- 293

Query: 300 PKIKVYGFEEDP-------------------------------GAHFDDNEDSYGSVMEA 328
           P++    FEED                                G   +D+ED+  SV  A
Sbjct: 294 PQLVAAAFEEDSNEDSNLDGSARSSWDETNSSDDLDDLDYQMNGEEQEDDEDNQESVT-A 352

Query: 329 LSDGFEPDDELDFAELEEVREDLEFVTVSELNGSNNTKPAKKSATDSSSANQRKKIQAIE 388
           L  G + DD +      E+R D E +++       N    +KS+      N RK      
Sbjct: 353 L--GVDHDDNV------EMRIDPENISLPSEQVDRNPAAVQKSSAKVKQENARK------ 398

Query: 389 KKLTAKGKVKKVPKLNIPGSAKRLKVKEKAVLTEVFSKYAVKAASTAKE 437
           KK  +K K KKV  L++PGS++RLK++EKAVL+EVFSKY +KA   +K+
Sbjct: 399 KKPISKEKTKKV--LDVPGSSRRLKIREKAVLSEVFSKYGLKATLASKD 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501987|ref|XP_003519804.1| PREDICTED: uncharacterized protein LOC100786279 [Glycine max]

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 150/341 (43%), Positives = 208/341 (60%), Gaps = 46/341 (13%)

Query: 126 MRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKDEPKK 185
           M +W E KPRGFGEGKVYDTS+EDKLL+E++QSR AQ  N+ KL++  +K +  +   KK
Sbjct: 1   MNKWFEKKPRGFGEGKVYDTSVEDKLLEEMRQSRIAQAENLTKLKSNPVKHASNESVQKK 60

Query: 186 KEPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAF 245
           K+ E +P G RV L+NLPKKKNIH+DLKSA +G+PGI NI+P V+GNKKT+DPICKGFA+
Sbjct: 61  KDSELVPIGGRVCLVNLPKKKNIHKDLKSALQGIPGITNIVPAVTGNKKTRDPICKGFAY 120

Query: 246 VDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVN------------------------ 281
           VDFE E+ A RFV+L++ Q I FGK+QKQI+CE++N                        
Sbjct: 121 VDFECEEDAIRFVELYTGQAITFGKIQKQIKCELLNVQSSSSSLKLSKNLNAAPQLVARF 180

Query: 282 ---SSSSNSVDGH--SSDDTSGYPKIKVYGFEEDPGAHFDDNEDSYGSVMEALSDGFEPD 336
              S+  +++DG   SS D +           +  G   +D+ED+  SV    + G + D
Sbjct: 181 EEVSNEDSNLDGSALSSWDEANSSDDLDDLDYQMNGEEQEDDEDNQESVS---TLGVDHD 237

Query: 337 DELDFAELEEVREDLEFVTVSELNGSNNTKPAKKSATDSSSANQRKKIQAIEKKLTAKGK 396
           D +      E+R D E  ++       N    +KS+      N RK      KK T+K +
Sbjct: 238 DSV------EMRIDPEICSLPSEQVDRNHAAEQKSSAKVKQENARK------KKPTSKDR 285

Query: 397 VKKVPKLNIPGSAKRLKVKEKAVLTEVFSKYAVKAASTAKE 437
            KKV  L +PGS++RLK++EKAVL++VFSKY +KA   +K+
Sbjct: 286 DKKV--LGVPGSSRRLKIREKAVLSDVFSKYGLKATLASKD 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486079|ref|XP_003613327.1| RNA recognition motif (RRM)-containing protein-like protein [Medicago truncatula] gi|355514662|gb|AES96285.1| RNA recognition motif (RRM)-containing protein-like protein [Medicago truncatula]

 Score =  250 bits (639), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 151/323 (46%), Positives = 207/323 (64%), Gaps = 18/323 (5%)

Query: 123 FGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKDE 182
           + +M+ W E KP+GFGEGKVYDTS+EDKL +E+Q+S++AQ  N+ KL     K +P K+ 
Sbjct: 110 YDEMKEWWEKKPKGFGEGKVYDTSVEDKLFEEMQKSKQAQALNLKKL-----KTNPIKNN 164

Query: 183 PKKKEPEDM-PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICK 241
             KK  E + P   RVRL+NLPKK+ I RDLKSAF+G+PGI NI+P V GNKKT+DP+CK
Sbjct: 165 VTKKIDEIVVPVRSRVRLVNLPKKRKIDRDLKSAFQGIPGITNIVPAVIGNKKTRDPVCK 224

Query: 242 GFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSSNSVDGHSSDDTSGYPK 301
           GFAFVDF+ ED A RFV+L++ Q I FGK+QK I+CE+VN+ SS S  G + +  +  P 
Sbjct: 225 GFAFVDFKHEDDAIRFVELYTGQTITFGKIQKPIKCELVNAQSS-SPPGLNQNINTALPL 283

Query: 302 IKVYGFEEDPGAHFDDNEDSYGSVMEALSDGFEPDDELD-----FAELEEVRED--LEFV 354
           +    FEED     + ++ ++ +  E   D  +   E D     FA +  V  D  ++  
Sbjct: 284 LP--SFEEDSNEDSNIDDSAFNTWDETEVDDSDELQESDGESQEFATVLTVDSDDSVQMT 341

Query: 355 TVSELNGSNNTKPAKKSATDSSSANQRKKIQAIEKKLTAKGKVKKVPKLNIPGSAKRLKV 414
             SE+    + +  +K + D  SA   K+  A +KK   K   KKV  L++PGSAKRLK+
Sbjct: 342 NGSEIESLLSKQVDRKPSADKKSAVNVKQENAPKKKSNQKENTKKV--LDVPGSAKRLKI 399

Query: 415 KEKAVLTEVFSKYAVKAASTAKE 437
           KEKAVL++VFSKY  KAA  +KE
Sbjct: 400 KEKAVLSDVFSKYGSKAALASKE 422

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452096|ref|XP_004143796.1| PREDICTED: uncharacterized protein LOC101210443 [Cucumis sativus]

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 167/437 (38%), Positives = 238/437 (54%), Gaps = 57/437 (13%)

Query: 40  NPLY-PFISKNAMFVSSPQQTQQARLGFKTIHNGLSLLCVS--------AVKNKWIKGGS 90
            PL+ PF +   +   S          F+  H  LSL+  S        AVK +  KGG 
Sbjct: 5   TPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVK-RLGKGGI 63

Query: 91  EVVESDGSDSD-DFDDFDEDDADNDEDEG-MMISFGKMRRWLENKPRGFGEGKVYDTSIE 148
            + E   SDSD  FD+F ++  DN +DE  +++     + W   +PRGFGEGKVYDTSIE
Sbjct: 64  ALTEP--SDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIE 121

Query: 149 DKLLQEIQQSREAQMANINKLENELLKPSPKKDEPKK-KEPEDMPSGIRVRLLNLPKKKN 207
           D LLQE++Q REAQ ANINKL+++            +   PE + +G+ VR++NLP+KKN
Sbjct: 122 DNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIAAPEIVSTGVCVRIINLPRKKN 181

Query: 208 IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267
           IHRDL  AFKG PGIINI P V GNKKT+DP+CKGFAFVD +SE  A  F+Q FS + + 
Sbjct: 182 IHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVDCKSEGDALSFLQAFSGRYLT 241

Query: 268 FGKVQKQIRCEMVNSSSSNSVDGHSSDDTSGYPKIKVYGFEEDPGAHFDDNEDSYGSVME 327
           FG+VQKQI+CE++N  +S+S    S   T+ + ++ +    E+    F D +    S   
Sbjct: 242 FGRVQKQIKCEIMNRQTSSSARNSSMSSTN-HSRLSIL---EEEAEQFVDIDVDLAS--- 294

Query: 328 ALSDGFEPDDELDFAELEEVREDLEFVTVSELN--GSNNTKPAKKSATDSSSANQRKKIQ 385
                     E    + E++ +DL +V+ S  +    N  +   +    S S  +  KI+
Sbjct: 295 ----------EATRTKTEDIEDDLAYVSESHSHEEDDNGVESRTEFTIQSPSEKEVNKIE 344

Query: 386 A----------IEKKLT-------------AKGKVKKVPKLNIPGSAKRLKVKEKAVLTE 422
                      I ++++              K K +K     IPGSAKRL++KEKAVLT+
Sbjct: 345 LEEILPQGREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKAVLTD 404

Query: 423 VFSKYAVKAASTAKEGN 439
           V+S+Y  K+A  ++EGN
Sbjct: 405 VYSRYGKKSALVSQEGN 421

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086503|emb|CBI32092.3| unnamed protein product [Vitis vinifera]

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 133/268 (49%), Positives = 173/268 (64%), Gaps = 17/268 (6%)

Query: 41  PLYPFISKNAM----FVSSPQQTQQARLGFKTIHNGLSL-LCVSAVKNKWIKGGSEVVES 95
           PL PF+S NA     F+ S  + ++ +LGF+ +     +  CVSA K +           
Sbjct: 39  PLLPFLSVNASSTASFLPSIHRLREPQLGFRVVLGRERIGFCVSARKRR----------- 87

Query: 96  DGSDSDDFDDFDEDDADNDEDEGMMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEI 155
           +G  +   +D   DD D  +DE   I+F  M RW  NKP GFGEGKVYDT IEDKLL+EI
Sbjct: 88  NGDGTPLDEDGIGDDGDESDDEDAFIAFPDMMRWYNNKPSGFGEGKVYDTRIEDKLLEEI 147

Query: 156 QQSREAQMANINKLENELLKP-SPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDLKS 214
           +QSR AQ+ANI+KL+   + P S K +   +K PE + +  RVR+ NLPKKKNIHRDL+ 
Sbjct: 148 KQSRVAQLANIDKLKKNPVNPNSEKANNQGQKAPEPVANAFRVRVANLPKKKNIHRDLQL 207

Query: 215 AFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQ 274
           AFKGVPGI+NIIP VSGNKKT+DP+CKGFAFVD ++E+   RFV +FS Q I FGK++KQ
Sbjct: 208 AFKGVPGIVNIIPAVSGNKKTRDPVCKGFAFVDLKTENDVNRFVHMFSEQNITFGKIRKQ 267

Query: 275 IRCEMVNSSSSNSVDGHSSDDTSGYPKI 302
           I+CE+ NS S N     S+  T   P+ 
Sbjct: 268 IKCEITNSGSPNVTYEQSAVSTFTDPQC 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485933|ref|XP_004157315.1| PREDICTED: uncharacterized LOC101210443 [Cucumis sativus]

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 163/435 (37%), Positives = 235/435 (54%), Gaps = 53/435 (12%)

Query: 40  NPLY-PFISKNAMFVSSPQQTQQARLGFKTIHNGLSLLCVS--------AVKNKWIKGGS 90
            PL+ PF +   +   S          F+  H  LSL+  S        AVK +  KGG 
Sbjct: 5   TPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVK-RLGKGGI 63

Query: 91  EVVESDGSDSDDFDDFDEDDADNDEDEGMMISFGKMRRWLENKPRGFGEGKVYDTSIEDK 150
            + E   SD    + FDED+ +  +++ +++     + W   +PRGFGEGKVYDTSIED 
Sbjct: 64  ALTEPSDSDIGFDEFFDEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDN 123

Query: 151 LLQEIQQSREAQMANINKLENELLKPSPKKDEPKK-KEPEDMPSGIRVRLLNLPKKKNIH 209
           LLQE++Q REAQ ANINKL+++            +   PE + +G+ VR++NLPKKKNIH
Sbjct: 124 LLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIAAPEIVSTGVCVRIINLPKKKNIH 183

Query: 210 RDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269
           RDL  AFKG PGIINI P V GNKKT+DP+CKGFAFVD +SE  A  F+Q FS + + FG
Sbjct: 184 RDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVDCKSEGDALSFLQAFSGRYLTFG 243

Query: 270 KVQKQIRCEMVNSSSSNSVDGHSSDDTSGYPKIKVYGFEEDPGAHFDDNEDSYGSVMEAL 329
           +VQKQI+CE++N  +S+S    S   T+ + ++ +    E+    F D +    S     
Sbjct: 244 RVQKQIKCEIMNRQTSSSARNSSMSSTN-HSRLSIL---EEEAEQFVDIDVDLAS----- 294

Query: 330 SDGFEPDDELDFAELEEVREDLEFVTVSELN--GSNNTKPAKKSATDSSSANQRKKIQA- 386
                   E    + E++ +DL +V+ S  +    N  +   +    S S  +  KI+  
Sbjct: 295 --------EATRTKTEDIEDDLAYVSESHSHEEDDNGVESRTEFTIQSPSEKEVNKIELE 346

Query: 387 ---------IEKKLT-------------AKGKVKKVPKLNIPGSAKRLKVKEKAVLTEVF 424
                    I ++++              K K +K     IPGSAKRL++KEKAVLT+V+
Sbjct: 347 EILPQGREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKAVLTDVY 406

Query: 425 SKYAVKAASTAKEGN 439
           S+Y  K+A  ++EGN
Sbjct: 407 SRYGKKSALVSQEGN 421

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30698005|ref|NP_177177.2| RNA recognition motif-containing protein [Arabidopsis thaliana] gi|28392945|gb|AAO41908.1| unknown protein [Arabidopsis thaliana] gi|28827688|gb|AAO50688.1| unknown protein [Arabidopsis thaliana] gi|332196911|gb|AEE35032.1| RNA recognition motif-containing protein [Arabidopsis thaliana]

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 138/202 (68%), Gaps = 2/202 (0%)

Query: 125 KMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSP-KKDEP 183
           KM++WLE KPRGFG GK Y+T IEDKLL EI+QS +AQ AN+NKL+N+ LK    K+D+ 
Sbjct: 116 KMKKWLEKKPRGFGLGKKYETLIEDKLLDEIEQSWKAQAANLNKLKNDPLKSQQLKRDDN 175

Query: 184 KKKEPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGF 243
             K   +   G RVR+ NLPKKKN+HRDLK AFK V G+++I P VSGNKKTKDP+CKGF
Sbjct: 176 LLKGTGETQIGFRVRVTNLPKKKNVHRDLKVAFKEVSGVLSITPAVSGNKKTKDPVCKGF 235

Query: 244 AFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSSNSVDGHSS-DDTSGYPKI 302
           A VDF++E  A RFV+ F+ Q +AFGKV KQI+C++V  +S +SV      D+     K+
Sbjct: 236 AHVDFKTEIDANRFVKQFTGQSLAFGKVIKQIKCQVVEFTSDDSVSKEVYLDNGFKVQKL 295

Query: 303 KVYGFEEDPGAHFDDNEDSYGS 324
              G E D  A   + E   GS
Sbjct: 296 PYSGLEGDSSADVVEEEVLLGS 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841757|ref|XP_002888760.1| hypothetical protein ARALYDRAFT_894820 [Arabidopsis lyrata subsp. lyrata] gi|297334601|gb|EFH65019.1| hypothetical protein ARALYDRAFT_894820 [Arabidopsis lyrata subsp. lyrata]

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/164 (62%), Positives = 123/164 (75%), Gaps = 1/164 (0%)

Query: 125 KMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSP-KKDEP 183
           KM++WLE KPRGFG GK Y+TSIEDKLL EIQQS +AQ AN+NKL+N+ LK    K+D  
Sbjct: 116 KMKKWLEKKPRGFGLGKKYETSIEDKLLDEIQQSWKAQAANLNKLKNDPLKSQQLKRDNN 175

Query: 184 KKKEPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGF 243
             K   +   G RVR+ NLPKKKN+HRDLK AFK V GI+ I P VSGNKKTKDP+CKGF
Sbjct: 176 LIKGTGETEIGFRVRVTNLPKKKNVHRDLKVAFKEVSGILCITPAVSGNKKTKDPVCKGF 235

Query: 244 AFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSSNS 287
           A VDF+SE  A RFV+ F+ Q +AFGKV KQI+C++V  +S  S
Sbjct: 236 AHVDFKSEIEANRFVKQFTGQSLAFGKVIKQIKCQVVEFTSDES 279

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
TAIR|locus:2020668	538	AT1G70200 [Arabidopsis thalian	0.546	0.446	0.410	2.3e-39

TAIR|locus:2020668 AT1G70200 [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 101/246 (41%), Positives = 132/246 (53%)

Query:   125 KMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENXXXXXXXXXXXXX 184
             KM++WLE KPRGFG GK Y+T IEDKLL EI+QS +AQ AN+NKL+N             
Sbjct:   116 KMKKWLEKKPRGFGLGKKYETLIEDKLLDEIEQSWKAQAANLNKLKNDPLKSQQLKRDDN 175

Query:   185 XXXXXXMPS-GIRVRLLNLPKKKNIHRDLKSAFKXXXXXXXXXXXXXXXKKTKDPICKGF 243
                       G RVR+ NLPKKKN+HRDLK AFK               KKTKDP+CKGF
Sbjct:   176 LLKGTGETQIGFRVRVTNLPKKKNVHRDLKVAFKEVSGVLSITPAVSGNKKTKDPVCKGF 235

Query:   244 AFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMXXXXXXXXXXXXXXXXTSGYP--K 301
             A VDF++E  A RFV+ F+ Q +AFGKV KQI+C++                 +G+   K
Sbjct:   236 AHVDFKTEIDANRFVKQFTGQSLAFGKVIKQIKCQVVEFTSDDSVSKEVYLD-NGFKVQK 294

Query:   302 IKVYGFEEDPGAHFDDNEDSYGSVMEALSDGFEPDD-ELDFAELEEVREDLEFVTVSELN 360
             +   G E D  A   + E   GS  E+     E D+ E++  E   +   +E   + E+ 
Sbjct:   295 LPYSGLEGDSSADVVEEEVLLGSGEESDDSEEEVDEREVEDDERNHISSSIESSPI-EMT 353

Query:   361 GSNNTK 366
               +NTK
Sbjct:   354 RDSNTK 359

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0009002801 hypothetical protein (402 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	439
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	3e-05
pfam00076	70	pfam00076, RRM_1, RNA recognition motif	2e-04
smart00360	73	smart00360, RRM, RNA recognition motif	0.001

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 197 VRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATR 256
           + + NLP       DL+  F     I ++  V     + KD   KGFAFV+FES + A +
Sbjct: 1   LFVGNLPPDTTEE-DLRELFSKFGEIESVRIV-----RDKDGKSKGFAFVEFESPEDAEK 54

Query: 257 FVQLFSRQII 266
            ++  + + +
Sbjct: 55  ALEALNGKEL 64

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 201 NLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQL 260
           NLP       DLK  F     I +I  V     ++K     GFAFV+FE E+ A + ++ 
Sbjct: 5   NLPPDTT-EEDLKDLFSKFGPIESIRIVRDETGRSK-----GFAFVEFEDEEDAEKALEA 58

Query: 261 FSRQII 266
            + + +
Sbjct: 59  LNGKEL 64

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 201 NLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQL 260
           NLP       +L+  F     + ++   +  +K+T     KGFAFV+FESE+ A + ++ 
Sbjct: 6   NLPPDTTE-EELRELFSKFGKVESV--RLVRDKETGKS--KGFAFVEFESEEDAEKALEA 60

Query: 261 FSRQII 266
            + + +
Sbjct: 61  LNGKEL 66

Length = 73

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	439
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.68
KOG0122	270	consensus Translation initiation factor 3, subunit	99.61
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.61
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.58
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.58
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.57
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.53
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.5
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.47
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	99.46
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.4
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.38
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.28
COG0724	306	RNA-binding proteins (RRM domain) [General functio	99.28
KOG0148	321	consensus Apoptosis-promoting RNA-binding protein	99.27
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.26
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.26
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.25
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.21
PLN03213	759	repressor of silencing 3; Provisional	99.2
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.2
smart00362	72	RRM_2 RNA recognition motif.	99.12
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.07
smart00360	71	RRM RNA recognition motif.	99.06
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	99.03
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.02
PLN03120	260	nucleic acid binding protein; Provisional	98.97
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	98.95
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	98.94
KOG0125	376	consensus Ataxin 2-binding protein (RRM superfamil	98.84
PLN03121	243	nucleic acid binding protein; Provisional	98.84
KOG0107	195	consensus Alternative splicing factor SRp20/9G8 (R	98.76
KOG0108	435	consensus mRNA cleavage and polyadenylation factor	98.75
KOG0147	549	consensus Transcriptional coactivator CAPER (RRM s	98.75
smart00361	70	RRM_1 RNA recognition motif.	98.74
KOG0110	725	consensus RNA-binding protein (RRM superfamily) [G	98.74
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	98.69
KOG0145	360	consensus RNA-binding protein ELAV/HU (RRM superfa	98.69
KOG0131	203	consensus Splicing factor 3b, subunit 4 [RNA proce	98.53
KOG0148	321	consensus Apoptosis-promoting RNA-binding protein	98.49
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	98.48
KOG0149	247	consensus Predicted RNA-binding protein SEB4 (RRM	98.46
KOG0126	219	consensus Predicted RNA-binding protein (RRM super	98.43
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	98.41
KOG0131	203	consensus Splicing factor 3b, subunit 4 [RNA proce	98.4
KOG0114	124	consensus Predicted RNA-binding protein (RRM super	98.4
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	98.37
KOG0145	360	consensus RNA-binding protein ELAV/HU (RRM superfa	98.33
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	98.27
KOG0146	371	consensus RNA-binding protein ETR-3 (RRM superfami	98.25
KOG0109	346	consensus RNA-binding protein LARK, contains RRM a	98.23
KOG0105	241	consensus Alternative splicing factor ASF/SF2 (RRM	98.23
KOG4206	221	consensus Spliceosomal protein snRNP-U1A/U2B [RNA	98.2
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	98.2
KOG4207	256	consensus Predicted splicing factor, SR protein su	98.14
KOG0130	170	consensus RNA-binding protein RBM8/Tsunagi (RRM su	98.12
KOG4208	214	consensus Nucleolar RNA-binding protein NIFK [Gene	98.09
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	98.09
KOG0121	153	consensus Nuclear cap-binding protein complex, sub	98.01
KOG0110	725	consensus RNA-binding protein (RRM superfamily) [G	97.98
KOG0124	544	consensus Polypyrimidine tract-binding protein PUF	97.97
KOG4210	285	consensus Nuclear localization sequence binding pr	97.88
KOG0533	243	consensus RRM motif-containing protein [RNA proces	97.83
KOG4205	311	consensus RNA-binding protein musashi/mRNA cleavag	97.83
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	97.8
KOG0132	894	consensus RNA polymerase II C-terminal domain-bind	97.56
KOG0109	346	consensus RNA-binding protein LARK, contains RRM a	97.38
KOG0113	335	consensus U1 small nuclear ribonucleoprotein (RRM	97.36
KOG1457	284	consensus RNA binding protein (contains RRM repeat	97.34
KOG0116	419	consensus RasGAP SH3 binding protein rasputin, con	97.3
KOG0106	216	consensus Alternative splicing factor SRp55/B52/SR	97.27
KOG4454	267	consensus RNA binding protein (RRM superfamily) [G	97.16
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	96.86
COG0724	306	RNA-binding proteins (RRM domain) [General functio	96.74
KOG0124	544	consensus Polypyrimidine tract-binding protein PUF	96.66
KOG0226	290	consensus RNA-binding proteins [General function p	96.62
KOG4212	608	consensus RNA-binding protein hnRNP-M [RNA process	96.57
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	96.52
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	96.48
KOG1548	382	consensus Transcription elongation factor TAT-SF1	95.95
KOG0151	877	consensus Predicted splicing regulator, contains R	95.73
KOG4209	231	consensus Splicing factor RNPS1, SR protein superf	95.61
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	95.38
KOG1995	351	consensus Conserved Zn-finger protein [General fun	95.28
KOG0153	377	consensus Predicted RNA-binding protein (RRM super	95.26
KOG0146	371	consensus RNA-binding protein ETR-3 (RRM superfami	94.72
KOG4205	311	consensus RNA-binding protein musashi/mRNA cleavag	94.32
KOG1457	284	consensus RNA binding protein (contains RRM repeat	94.21
KOG3152	278	consensus TBP-binding protein, activator of basal	94.16
KOG4212	608	consensus RNA-binding protein hnRNP-M [RNA process	94.15
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	94.13
KOG4206	221	consensus Spliceosomal protein snRNP-U1A/U2B [RNA	94.06
KOG2314	698	consensus Translation initiation factor 3, subunit	93.96
KOG0120	500	consensus Splicing factor U2AF, large subunit (RRM	93.48
KOG0106	216	consensus Alternative splicing factor SRp55/B52/SR	93.21
PF03467	176	Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120	93.05
KOG4660	549	consensus Protein Mei2, essential for commitment t	92.83
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	91.31
KOG4849	498	consensus mRNA cleavage factor I subunit/CPSF subu	88.81
PF03880	74	DbpA: DbpA RNA binding domain ; InterPro: IPR00558	88.6
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	88.58
smart00361	70	RRM_1 RNA recognition motif.	88.22
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	86.95
KOG4211	510	consensus Splicing factor hnRNP-F and related RNA-	86.62
PF14812	81	PBP1_TM: Transmembrane domain of transglycosylase	85.58
KOG2193	584	consensus IGF-II mRNA-binding protein IMP, contain	84.77
PF09026	101	CENP-B_dimeris: Centromere protein B dimerisation	84.01
KOG4211	510	consensus Splicing factor hnRNP-F and related RNA-	82.5
COG5175	480	MOT2 Transcriptional repressor [Transcription]	81.96
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	81.3
PTZ00415	2849	transmission-blocking target antigen s230; Provisi	80.62
PF09026	101	CENP-B_dimeris: Centromere protein B dimerisation	80.31

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.68  E-value=2.2e-16  Score=146.69  Aligned_cols=80  Identities=18%  Similarity=0.287  Sum_probs=69.8

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK  273 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK  273 (439)
                      |-.|||+|||.+++ +.+|+.+|..+|.|.+++  +..++.||  .|||||||+|.+.++|.++|+.+||+.|.+    +
T Consensus       269 ~~~lfV~NL~~~~~-e~~L~~~F~~fG~v~~v~--i~~d~~t~--~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g----r  339 (352)
T TIGR01661       269 GYCIFVYNLSPDTD-ETVLWQLFGPFGAVQNVK--IIRDLTTN--QCKGYGFVSMTNYDEAAMAILSLNGYTLGN----R  339 (352)
T ss_pred             CcEEEEeCCCCCCC-HHHHHHHHHhCCCeEEEE--EeEcCCCC--CccceEEEEECCHHHHHHHHHHhCCCEECC----e
Confidence            34799999999975 889999999999999998  77787797  999999999999999999999999999874    5


Q ss_pred             eeeeeeecC
Q 013598          274 QIRCEMVNS  282 (439)
Q Consensus       274 ~ikcE~~~~  282 (439)
                      .|++..+..
T Consensus       340 ~i~V~~~~~  348 (352)
T TIGR01661       340 VLQVSFKTN  348 (352)
T ss_pred             EEEEEEccC
Confidence            666665543

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=8.2e-16  Score=147.95  Aligned_cols=84  Identities=29%  Similarity=0.374  Sum_probs=72.3

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ..+.+..+|||+|||++++ +.||++||..||.|.||+  +..|++||  +|||||||+|.++++|.++|+.|||+-..-
T Consensus       184 R~R~D~~tvRvtNLsed~~-E~dL~eLf~~fg~i~rvy--lardK~TG--~~kGFAFVtF~sRddA~rAI~~LnG~gyd~  258 (270)
T KOG0122|consen  184 RERDDEATVRVTNLSEDMR-EDDLEELFRPFGPITRVY--LARDKETG--LSKGFAFVTFESRDDAARAIADLNGYGYDN  258 (270)
T ss_pred             ccCCccceeEEecCccccC-hhHHHHHhhccCccceeE--EEEccccC--cccceEEEEEecHHHHHHHHHHccCcccce
Confidence            3557999999999999976 889999999999999999  55667798  999999999999999999999999998775


Q ss_pred             ceeeceeeeeeec
Q 013598          269 GKVQKQIRCEMVN  281 (439)
Q Consensus       269 gKVEK~ikcE~~~  281 (439)
                      +    -++||...
T Consensus       259 L----ILrvEwsk  267 (270)
T KOG0122|consen  259 L----ILRVEWSK  267 (270)
T ss_pred             E----EEEEEecC
Confidence            3    34555544

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.61  E-value=1.3e-15  Score=149.12  Aligned_cols=137  Identities=12%  Similarity=0.177  Sum_probs=107.2

Q ss_pred             HHhhcCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCC
Q 013598          128 RWLENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKK  206 (439)
Q Consensus       128 ~wl~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~  206 (439)
                      .+-..++||||++.|.+.+.+++++++|.+.. .++.+.+.+++.  ..              ......+|||+|||..+
T Consensus       142 d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p--~~--------------~~~~~~~lfV~nLp~~v  205 (346)
T TIGR01659       142 DYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARP--GG--------------ESIKDTNLYVTNLPRTI  205 (346)
T ss_pred             cCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccc--cc--------------cccccceeEEeCCCCcc
Confidence            33445899999999999999999999998866 555565554321  10              01123579999999986


Q ss_pred             chHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCCCC
Q 013598          207 NIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       207 ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~S~~  286 (439)
                      + ++||+++|..+|.|++++  ...++.|+  .+||||||+|.+.++|.++|+.|||+.|.++  .++++|.+++.+...
T Consensus       206 t-ee~L~~~F~~fG~V~~v~--i~~d~~tg--~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~--~~~l~V~~a~~~~~~  278 (346)
T TIGR01659       206 T-DDQLDTIFGKYGQIVQKN--ILRDKLTG--TPRGVAFVRFNKREEAQEAISALNNVIPEGG--SQPLTVRLAEEHGKA  278 (346)
T ss_pred             c-HHHHHHHHHhcCCEEEEE--EeecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCccCCC--ceeEEEEECCccccc
Confidence            5 889999999999999998  44566686  8999999999999999999999999988765  467777777765544


Q ss_pred             C
Q 013598          287 S  287 (439)
Q Consensus       287 ~  287 (439)
                      .
T Consensus       279 ~  279 (346)
T TIGR01659       279 K  279 (346)
T ss_pred             c
Confidence            3

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.58  E-value=1.2e-14  Score=140.49  Aligned_cols=138  Identities=17%  Similarity=0.287  Sum_probs=102.3

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR  210 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~k  210 (439)
                      .+++|||++.|++...++++|. |.+.. .++++.+...........    ..+.......+..-+|||+|||...+ +.
T Consensus       128 ~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~~~~~----~~~~~~~~~~p~~~~l~v~nl~~~~t-e~  201 (457)
T TIGR01622       128 RRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAEKNRAA----KAATHQPGDIPNFLKLYVGNLHFNIT-EQ  201 (457)
T ss_pred             CCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchhhhhhh----hcccccCCCCCCCCEEEEcCCCCCCC-HH
Confidence            4789999999999999999995 44433 666666553322111100    00111112234478999999999865 88


Q ss_pred             HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCC
Q 013598          211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSS  283 (439)
Q Consensus       211 DL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~  283 (439)
                      +|+++|..+|.|..|+  ...++.||  .|||||||+|.+.++|.++++.|||..|.+    +.|+|..+..+
T Consensus       202 ~l~~~f~~~G~i~~v~--~~~d~~~g--~~~g~afV~f~~~e~A~~A~~~l~g~~i~g----~~i~v~~a~~~  266 (457)
T TIGR01622       202 ELRQIFEPFGDIEDVQ--LHRDPETG--RSKGFGFIQFHDAEEAKEALEVMNGFELAG----RPIKVGYAQDS  266 (457)
T ss_pred             HHHHHHHhcCCeEEEE--EEEcCCCC--ccceEEEEEECCHHHHHHHHHhcCCcEECC----EEEEEEEccCC
Confidence            9999999999999998  45566676  899999999999999999999999988863    57788887733

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.58  E-value=3.6e-15  Score=138.61  Aligned_cols=134  Identities=19%  Similarity=0.271  Sum_probs=105.9

Q ss_pred             HhhcCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCc
Q 013598          129 WLENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKN  207 (439)
Q Consensus       129 wl~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~n  207 (439)
                      ...+++||||++.|++.+.++++|++|.+.. .++.+.+.+.++..                ....+.+|||+|||...+
T Consensus        39 ~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~----------------~~~~~~~l~v~~l~~~~~  102 (352)
T TIGR01661        39 KVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSS----------------DSIKGANLYVSGLPKTMT  102 (352)
T ss_pred             CCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccc----------------cccccceEEECCccccCC
Confidence            3346899999999999999999999999877 67777766442210                012345899999999865


Q ss_pred             hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCCC
Q 013598          208 IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       208 i~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~S~  285 (439)
                       .++|+.+|..+|.|+.++.  ..++.|+  .+||||||+|.+.++|.++|+.|||..+.+.  ..++++..++..+.
T Consensus       103 -~~~l~~~f~~~G~i~~~~~--~~~~~~~--~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~--~~~i~v~~a~~~~~  173 (352)
T TIGR01661       103 -QHELESIFSPFGQIITSRI--LSDNVTG--LSKGVGFIRFDKRDEADRAIKTLNGTTPSGC--TEPITVKFANNPSS  173 (352)
T ss_pred             -HHHHHHHHhccCCEEEEEE--EecCCCC--CcCcEEEEEECCHHHHHHHHHHhCCCccCCC--ceeEEEEECCCCCc
Confidence             8899999999999999883  4444465  8899999999999999999999999987652  24677877776553

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.57  E-value=5.5e-15  Score=155.00  Aligned_cols=134  Identities=13%  Similarity=0.172  Sum_probs=103.6

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR  210 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~k  210 (439)
                      .++||||++.|.+.+.+++++++|.+.. .+|.+-++...+.|. ..+.. +.   .........+|||+|||...+ +.
T Consensus       146 gkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~-a~~~~-~~---~~~~~~~~~rLfVgnLp~~vt-ee  219 (612)
T TIGR01645       146 GKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQ-AQPII-DM---VQEEAKKFNRIYVASVHPDLS-ET  219 (612)
T ss_pred             CCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccc-ccccc-cc---ccccccccceEEeecCCCCCC-HH
Confidence            4899999999999999999999998866 777777663222111 11111 00   111223457999999999854 77


Q ss_pred             HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc--ceeecee
Q 013598          211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF--GKVQKQI  275 (439)
Q Consensus       211 DL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f--gKVEK~i  275 (439)
                      +|+.+|+.+|.|.+++  ...++.||  .+||||||.|.+.++|.++|+.+||+.|.+  +||.+++
T Consensus       220 dLk~lFs~FG~I~svr--l~~D~~tg--ksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi  282 (612)
T TIGR01645       220 DIKSVFEAFGEIVKCQ--LARAPTGR--GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV  282 (612)
T ss_pred             HHHHHHhhcCCeeEEE--EEecCCCC--CcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence            9999999999999998  45566676  899999999999999999999999999987  6666655

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.53  E-value=7.5e-14  Score=136.53  Aligned_cols=141  Identities=12%  Similarity=0.155  Sum_probs=97.9

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc-CCCCC----CCCC--CCCC------CCCCCCCCCccEE
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN-ELLKP----SPKK--DEPK------KKEPEDMPSGIRV  197 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~-~P~~~----n~~k--~~~a------kk~~e~~~dgvRV  197 (439)
                      ++.+|||++.|.+.+.+.++| +|.+.. .++.+.+..... .|.+.    ....  ....      ...........+|
T Consensus       220 ~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  298 (509)
T TIGR01642       220 NKEKNFAFLEFRTVEEATFAM-ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRI  298 (509)
T ss_pred             CCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEE
Confidence            478999999999999999999 466533 444444321111 11100    0000  0000      0011123456799


Q ss_pred             EEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeee
Q 013598          198 RLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRC  277 (439)
Q Consensus       198 rVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikc  277 (439)
                      ||+|||...+ ..+|+++|+.+|.|..+.  ...++.||  .+||||||+|.+.+.|.++|+.|||+.|.+.    .|.|
T Consensus       299 ~v~nlp~~~~-~~~l~~~f~~~G~i~~~~--~~~~~~~g--~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~----~l~v  369 (509)
T TIGR01642       299 YIGNLPLYLG-EDQIKELLESFGDLKAFN--LIKDIATG--LSKGYAFCEYKDPSVTDVAIAALNGKDTGDN----KLHV  369 (509)
T ss_pred             EEeCCCCCCC-HHHHHHHHHhcCCeeEEE--EEecCCCC--CcCeEEEEEECCHHHHHHHHHHcCCCEECCe----EEEE
Confidence            9999999865 889999999999999998  55666686  8999999999999999999999999998753    3455


Q ss_pred             eeecC
Q 013598          278 EMVNS  282 (439)
Q Consensus       278 E~~~~  282 (439)
                      +.+..
T Consensus       370 ~~a~~  374 (509)
T TIGR01642       370 QRACV  374 (509)
T ss_pred             EECcc
Confidence            55543

Members of this subfamily are found in plants, metazoa and fungi.

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.50  E-value=1.6e-13  Score=119.35  Aligned_cols=89  Identities=20%  Similarity=0.267  Sum_probs=75.3

Q ss_pred             CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       188 ~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      ...+..+.+|||+|||.... +.+|+++|..+|.|.+++  ...+++|+  .|||||||+|.+.++|.++|+.+||+.|.
T Consensus        28 ~~~~~~~~~lfVgnL~~~~t-e~~L~~~F~~~G~I~~v~--i~~d~~tg--~~kGfaFV~F~~~e~A~~Al~~lng~~i~  102 (144)
T PLN03134         28 GSLRLMSTKLFIGGLSWGTD-DASLRDAFAHFGDVVDAK--VIVDRETG--RSRGFGFVNFNDEGAATAAISEMDGKELN  102 (144)
T ss_pred             ccccCCCCEEEEeCCCCCCC-HHHHHHHHhcCCCeEEEE--EEecCCCC--CcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            34556788999999999864 889999999999999998  56677786  99999999999999999999999999987


Q ss_pred             cceeeceeeeeeecCCCC
Q 013598          268 FGKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       268 fgKVEK~ikcE~~~~~S~  285 (439)
                      +    +.++|+.+.....
T Consensus       103 G----r~l~V~~a~~~~~  116 (144)
T PLN03134        103 G----RHIRVNPANDRPS  116 (144)
T ss_pred             C----EEEEEEeCCcCCC
Confidence            3    4677777665433

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.47  E-value=8.7e-14  Score=139.44  Aligned_cols=141  Identities=16%  Similarity=0.264  Sum_probs=99.6

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-H----hhhhhccccccCCCCCCCCCC--CCCCCCCCCCCCccEEEEcCCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-E----AQMANINKLENELLKPSPKKD--EPKKKEPEDMPSGIRVRLLNLPK  204 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~----araaNld~~~~~P~~~n~~k~--~~akk~~e~~~dgvRVrVGNLPk  204 (439)
                      ++++|||++.|.+.+.+.+++++|.+.. .    ++.+-+..+..........+.  ............+.+|||+|||.
T Consensus       216 g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~  295 (562)
T TIGR01628       216 GRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDD  295 (562)
T ss_pred             CCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCC
Confidence            4789999999999999999999998765 3    333333222111110000000  00001112245788999999999


Q ss_pred             CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecC
Q 013598          205 KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNS  282 (439)
Q Consensus       205 k~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~  282 (439)
                      ..+ +.+|+++|..+|.|.+++  +..+ .||  .+||||||+|.+.++|.++|+.+||..|.+    |++.|..+..
T Consensus       296 ~~~-~~~L~~~F~~~G~i~~~~--i~~d-~~g--~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g----k~l~V~~a~~  363 (562)
T TIGR01628       296 TVT-DEKLRELFSECGEITSAK--VMLD-EKG--VSRGFGFVCFSNPEEANRAVTEMHGRMLGG----KPLYVALAQR  363 (562)
T ss_pred             ccC-HHHHHHHHHhcCCeEEEE--EEEC-CCC--CcCCeEEEEeCCHHHHHHHHHHhcCCeeCC----ceeEEEeccC
Confidence            864 889999999999999998  4444 465  889999999999999999999999988764    5666666554

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=99.46  E-value=4.1e-13  Score=140.15  Aligned_cols=130  Identities=25%  Similarity=0.371  Sum_probs=102.9

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCC-CCC--CC-------CCCCCCCccEEEEcC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKD-EPK--KK-------EPEDMPSGIRVRLLN  201 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~-~~a--kk-------~~e~~~dgvRVrVGN  201 (439)
                      ..||||++.|.=.+-...+|+|..++. .||-+|++.++.++-.-.-.+. ..+  +.       .+.+-.+--||-|.|
T Consensus        45 ~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRN  124 (678)
T KOG0127|consen   45 EKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRN  124 (678)
T ss_pred             cccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeec
Confidence            579999999999888999999999988 8999999988887653211111 000  00       111223477999999


Q ss_pred             CCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          202 LPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       202 LPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ||.++. .-||+-+|..||-|+-|.++.-.+  ++  +| |||||+|....+|..+++.|||..|.+
T Consensus       125 LPf~~k-~~dLk~vFs~~G~V~Ei~IP~k~d--gk--lc-GFaFV~fk~~~dA~~Al~~~N~~~i~g  185 (678)
T KOG0127|consen  125 LPFKCK-KPDLKNVFSNFGKVVEIVIPRKKD--GK--LC-GFAFVQFKEKKDAEKALEFFNGNKIDG  185 (678)
T ss_pred             CCcccC-cHHHHHHHhhcceEEEEEcccCCC--CC--cc-ceEEEEEeeHHHHHHHHHhccCceecC
Confidence            999975 559999999999999999884443  54  78 999999999999999999999999885

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.40  E-value=6.2e-13  Score=133.36  Aligned_cols=117  Identities=16%  Similarity=0.227  Sum_probs=93.7

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR  210 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~k  210 (439)
                      .+++|||++.|.+..-++++|+++.... .++.+-+..+..+|...              .....+|||+|||.+.+ .+
T Consensus        39 ~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~--------------~~~~~~vfV~nLp~~~~-~~  103 (562)
T TIGR01628        39 RRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLR--------------RSGVGNIFVKNLDKSVD-NK  103 (562)
T ss_pred             CCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccccccc--------------ccCCCceEEcCCCccCC-HH
Confidence            4789999999999999999999998865 66666665544333211              11223799999999865 88


Q ss_pred             HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       211 DL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      +|.++|..+|.|++++...  +. +|  ..||||||.|.+.++|.++|+++||..+.+
T Consensus       104 ~L~~~F~~~G~i~~~~i~~--~~-~g--~skg~afV~F~~~e~A~~Ai~~lng~~~~~  156 (562)
T TIGR01628       104 ALFDTFSKFGNILSCKVAT--DE-NG--KSRGYGFVHFEKEESAKAAIQKVNGMLLND  156 (562)
T ss_pred             HHHHHHHhcCCcceeEeee--cC-CC--CcccEEEEEECCHHHHHHHHHHhcccEecC
Confidence            9999999999999998443  32 33  679999999999999999999999998875

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>PF00076 RRM_1: RNA recognition motif

Probab=99.38  E-value=2.1e-12  Score=92.99  Aligned_cols=67  Identities=27%  Similarity=0.366  Sum_probs=58.3

Q ss_pred             EEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          197 VRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       197 VrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      |||+|||..++ +.+|+.+|..+|.+..+......   +  +.-+|||||+|.+.++|.++++.+||+.|.+-
T Consensus         1 l~v~nlp~~~t-~~~l~~~f~~~g~i~~~~~~~~~---~--~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~   67 (70)
T PF00076_consen    1 LYVGNLPPDVT-EEELRDFFSQFGKIESIKVMRNS---S--GKSKGYAFVEFESEEDAEKALEELNGKKINGR   67 (70)
T ss_dssp             EEEESETTTSS-HHHHHHHHHTTSTEEEEEEEEET---T--SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             cEEcCCCCcCC-HHHHHHHHHHhhhcccccccccc---c--ccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence            79999999976 88999999999999998855442   2  25699999999999999999999999998753

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.28  E-value=1.1e-11  Score=121.61  Aligned_cols=84  Identities=24%  Similarity=0.351  Sum_probs=72.7

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .....+.+|||+|||.+.+ +++|+++|..+|.|++++  ...+++|+  .+||||||+|.++++|.++|+.|||+.|..
T Consensus       102 ~~~~~~~~LfVgnLp~~~t-e~~L~~lF~~~G~V~~v~--i~~d~~tg--~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g  176 (346)
T TIGR01659       102 DTNNSGTNLIVNYLPQDMT-DRELYALFRTIGPINTCR--IMRDYKTG--YSFGYAFVDFGSEADSQRAIKNLNGITVRN  176 (346)
T ss_pred             CCCCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEecCCCC--ccCcEEEEEEccHHHHHHHHHHcCCCccCC
Confidence            4456789999999999865 889999999999999998  56777787  899999999999999999999999999873


Q ss_pred             ceeeceeeeeeec
Q 013598          269 GKVQKQIRCEMVN  281 (439)
Q Consensus       269 gKVEK~ikcE~~~  281 (439)
                          +.|++..+.
T Consensus       177 ----r~i~V~~a~  185 (346)
T TIGR01659       177 ----KRLKVSYAR  185 (346)
T ss_pred             ----ceeeeeccc
Confidence                556666554

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=99.28  E-value=1.3e-11  Score=102.16  Aligned_cols=70  Identities=26%  Similarity=0.394  Sum_probs=63.5

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ..+|||||||.+.+ ..+|..+|+.+|.+.+|+  ...++.||  .|||||||.|.+.++|..+|+.++|..|.+
T Consensus       115 ~~~l~v~nL~~~~~-~~~l~~~F~~~g~~~~~~--~~~d~~~~--~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~  184 (306)
T COG0724         115 NNTLFVGNLPYDVT-EEDLRELFKKFGPVKRVR--LVRDRETG--KSRGFAFVEFESEESAEKAIEELNGKELEG  184 (306)
T ss_pred             CceEEEeCCCCCCC-HHHHHHHHHhcCceeEEE--eeeccccC--ccCceEEEEecCHHHHHHHHHHcCCCeECC
Confidence            79999999999854 889999999999999998  45555686  999999999999999999999999999985

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=1.1e-11  Score=121.40  Aligned_cols=151  Identities=16%  Similarity=0.212  Sum_probs=115.1

Q ss_pred             cccccchHHHHHH------hhcCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCC
Q 013598          117 EGMMISFGKMRRW------LENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPE  189 (439)
Q Consensus       117 E~~~~~~~~M~~w------l~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e  189 (439)
                      -+.|.||+++-+=      --.|++|||.+-|+...-+|.++++|.+.+ -+|.|--|-++-.|...|-+...=-.---.
T Consensus        80 r~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQ  159 (321)
T KOG0148|consen   80 REAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQ  159 (321)
T ss_pred             HHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhcc
Confidence            3566676654221      123999999999999999999999999988 557777777776674433222000000234


Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      -+++..+|||||.+.-.+ +++|+..|..+|.|.-||  +-++        +|||||-|.+.|.|+.+|..+||.+|.+ 
T Consensus       160 ssp~NtsVY~G~I~~~lt-e~~mr~~Fs~fG~I~EVR--vFk~--------qGYaFVrF~tkEaAahAIv~mNntei~G-  227 (321)
T KOG0148|consen  160 SSPDNTSVYVGNIASGLT-EDLMRQTFSPFGPIQEVR--VFKD--------QGYAFVRFETKEAAAHAIVQMNNTEIGG-  227 (321)
T ss_pred             CCCCCceEEeCCcCcccc-HHHHHHhcccCCcceEEE--Eecc--------cceEEEEecchhhHHHHHHHhcCceeCc-
Confidence            568999999999999643 889999999999998887  5555        8999999999999999999999999984 


Q ss_pred             eeeceeeeeeecC
Q 013598          270 KVQKQIRCEMVNS  282 (439)
Q Consensus       270 KVEK~ikcE~~~~  282 (439)
                         ...||--=..
T Consensus       228 ---~~VkCsWGKe  237 (321)
T KOG0148|consen  228 ---QLVRCSWGKE  237 (321)
T ss_pred             ---eEEEEecccc
Confidence               5678865443

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.26  E-value=2.4e-11  Score=89.79  Aligned_cols=70  Identities=31%  Similarity=0.475  Sum_probs=59.0

Q ss_pred             EEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          197 VRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       197 VrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      |||+|||...+ ..||..+|..+|.|..++..  .++. |  .++|||||+|.+.++|.++++.++|..|.+-+|+
T Consensus         1 v~i~nlp~~~~-~~~l~~~f~~~g~v~~v~~~--~~~~-~--~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~   70 (70)
T PF14259_consen    1 VYISNLPPSTT-EEDLRNFFSRFGPVEKVRLI--KNKD-G--QSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR   70 (70)
T ss_dssp             EEEESSTTT---HHHHHHHCTTSSBEEEEEEE--ESTT-S--SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CEEeCCCCCCC-HHHHHHHHHhcCCcceEEEE--eeec-c--ccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence            79999999865 78999999999999888844  3432 3  8899999999999999999999999998876553

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.26  E-value=2.3e-11  Score=127.22  Aligned_cols=126  Identities=14%  Similarity=0.188  Sum_probs=96.9

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH---HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCch
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR---EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNI  208 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr---~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni  208 (439)
                      .++|||+.+.|.+...+.++++.+...+   .++.+.++.+.+...  .         ..+.....-+|||+|||.+.+ 
T Consensus       179 gKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~--~---------d~~~~~~~k~LfVgNL~~~~t-  246 (578)
T TIGR01648       179 KKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEE--V---------DEDVMAKVKILYVRNLMTTTT-  246 (578)
T ss_pred             CccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccc--c---------cccccccccEEEEeCCCCCCC-
Confidence            4789999999999999999998876433   466777765432211  0         112223345899999999865 


Q ss_pred             HHHHHHHhccC--CCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCCC
Q 013598          209 HRDLKSAFKGV--PGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       209 ~kDL~~aFk~v--GgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~S~  285 (439)
                      +.+|+++|..+  |.|.+|+            +.||||||+|.+.++|.++|+.+||+.|.    .+.|+|+.+...+.
T Consensus       247 ee~L~~~F~~f~~G~I~rV~------------~~rgfAFVeF~s~e~A~kAi~~lnG~~i~----Gr~I~V~~Akp~~~  309 (578)
T TIGR01648       247 EEIIEKSFSEFKPGKVERVK------------KIRDYAFVHFEDREDAVKAMDELNGKELE----GSEIEVTLAKPVDK  309 (578)
T ss_pred             HHHHHHHHHhcCCCceEEEE------------eecCeEEEEeCCHHHHHHHHHHhCCCEEC----CEEEEEEEccCCCc
Confidence            88999999999  9999885            34789999999999999999999999987    46677777765433

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.25  E-value=1.9e-11  Score=122.47  Aligned_cols=147  Identities=16%  Similarity=0.074  Sum_probs=102.0

Q ss_pred             cccchHHHHHHhhcCCCCccccccccchHHHHHHHHHHh--hH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCC-Cc
Q 013598          119 MMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQ--SR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMP-SG  194 (439)
Q Consensus       119 ~~~~~~~M~~wl~nKPrGFG~GK~YdT~iEeKlLeEM~~--sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~-dg  194 (439)
                      .|-+|+.+..-.--+.+|||++.|++.+.+++|++.|+.  .. .++++-+.++...........     ..+...+ .-
T Consensus        22 ~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~-----~~~~~~~~~~   96 (481)
T TIGR01649        22 ALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNS-----DFDSAGPNKV   96 (481)
T ss_pred             HHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCC-----cccCCCCCce
Confidence            344555554332336889999999999999999998753  23 777887777654322111000     0011112 33


Q ss_pred             cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeece
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQ  274 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~  274 (439)
                      .+|+|+|||...+ ..+|+++|..+|.|.+|++  ..+  .+    +|||||.|.+.++|.++|+.|||+.|..|  ...
T Consensus        97 ~~v~v~nl~~~vt-~~~L~~~F~~~G~V~~v~i--~~~--~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~--~~~  165 (481)
T TIGR01649        97 LRVIVENPMYPIT-LDVLYQIFNPYGKVLRIVT--FTK--NN----VFQALVEFESVNSAQHAKAALNGADIYNG--CCT  165 (481)
T ss_pred             EEEEEcCCCCCCC-HHHHHHHHhccCCEEEEEE--Eec--CC----ceEEEEEECCHHHHHHHHHHhcCCcccCC--ceE
Confidence            5899999998754 7789999999999999974  222  32    58999999999999999999999999754  234


Q ss_pred             eeeeeec
Q 013598          275 IRCEMVN  281 (439)
Q Consensus       275 ikcE~~~  281 (439)
                      ++|+.+.
T Consensus       166 l~v~~sk  172 (481)
T TIGR01649       166 LKIEYAK  172 (481)
T ss_pred             EEEEEec
Confidence            4444443

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.21  E-value=5e-11  Score=116.86  Aligned_cols=142  Identities=14%  Similarity=0.177  Sum_probs=99.5

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCC-------CCCC-CC----CCCCCccEEEE
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDE-------PKKK-EP----EDMPSGIRVRL  199 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~-------~akk-~~----e~~~dgvRVrV  199 (439)
                      +++|||++.|.+...+++++++|.+.. .++.+.+.++..+..........       .... ..    ....+.-.|+|
T Consensus       335 ~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l  414 (509)
T TIGR01642       335 LSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQL  414 (509)
T ss_pred             CcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEe
Confidence            589999999999999999999998866 66667766655433222111100       0000 00    01124567899


Q ss_pred             cCCCCCCc---------hHHHHHHHhccCCCeeEEeeccc-cCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          200 LNLPKKKN---------IHRDLKSAFKGVPGIINIIPVVS-GNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       200 GNLPkk~n---------i~kDL~~aFk~vGgvisIkpAv~-~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      .||+....         |..||+++|..+|.|++|+++.. .+..++  .++|||||+|++.++|.++|+.|||..|.+ 
T Consensus       415 ~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~--~~~G~~fV~F~~~e~A~~A~~~lnGr~~~g-  491 (509)
T TIGR01642       415 TNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNST--PGVGKVFLEYADVRSAEKAMEGMNGRKFND-  491 (509)
T ss_pred             ccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcC--CCcceEEEEECCHHHHHHHHHHcCCCEECC-
Confidence            99975211         24689999999999999987643 333343  779999999999999999999999999874 


Q ss_pred             eeeceeeeeee
Q 013598          270 KVQKQIRCEMV  280 (439)
Q Consensus       270 KVEK~ikcE~~  280 (439)
                         +.|.|...
T Consensus       492 ---r~v~~~~~  499 (509)
T TIGR01642       492 ---RVVVAAFY  499 (509)
T ss_pred             ---eEEEEEEe
Confidence               45555543

Members of this subfamily are found in plants, metazoa and fungi.

>PLN03213 repressor of silencing 3; Provisional

Probab=99.20  E-value=2.8e-11  Score=126.09  Aligned_cols=74  Identities=18%  Similarity=0.311  Sum_probs=66.1

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCH--HHHHHHHHHhCCceecc-
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESE--DYATRFVQLFSRQIIAF-  268 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~se--EdA~rfIEk~NGq~~~f-  268 (439)
                      -.+.|||||||+...+ +.||+++|..+|.|.++.+.    |+||    ||||||+|.+.  ..+.++|+.|||..+++ 
T Consensus         8 ~~gMRIYVGNLSydVT-EDDLravFSeFGsVkdVEIp----RETG----RGFAFVEMssdddaEeeKAISaLNGAEWKGR   78 (759)
T PLN03213          8 GGGVRLHVGGLGESVG-RDDLLKIFSPMGTVDAVEFV----RTKG----RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG   78 (759)
T ss_pred             CcceEEEEeCCCCCCC-HHHHHHHHHhcCCeeEEEEe----cccC----CceEEEEecCCcHHHHHHHHHHhcCCeecCc
Confidence            4679999999999854 88999999999999999865    7787    99999999987  78999999999999999 


Q ss_pred             -ceeece
Q 013598          269 -GKVQKQ  274 (439)
Q Consensus       269 -gKVEK~  274 (439)
                       +||+++
T Consensus        79 ~LKVNKA   85 (759)
T PLN03213         79 RLRLEKA   85 (759)
T ss_pred             eeEEeec
Confidence             666654

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.20  E-value=9e-11  Score=117.63  Aligned_cols=139  Identities=14%  Similarity=0.174  Sum_probs=100.1

Q ss_pred             CCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCC-C---------CC------CCCCC-----CCCCC
Q 013598          134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSP-K---------KD------EPKKK-----EPEDM  191 (439)
Q Consensus       134 PrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~-~---------k~------~~akk-----~~e~~  191 (439)
                      .+|||.+.+.+...++++|+.|.+.. .++.+.+.+++........ .         ++      ++.+.     .....
T Consensus       312 ~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~  391 (481)
T TIGR01649       312 KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQ  391 (481)
T ss_pred             CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccC
Confidence            47999999999999999999999987 8888888776543211000 0         00      11111     01123


Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCC--eeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc-
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPG--IINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF-  268 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGg--visIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f-  268 (439)
                      +++.+|+|+|||...+ +.+|+++|+.+|.  +.+|++.   ..+++   -||||||.|.+.++|.++|..+||+.|.. 
T Consensus       392 ~ps~~L~v~NLp~~~t-ee~L~~lF~~~G~~~i~~ik~~---~~~~~---~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~  464 (481)
T TIGR01649       392 PPSATLHLSNIPLSVS-EEDLKELFAENGVHKVKKFKFF---PKDNE---RSKMGLLEWESVEDAVEALIALNHHQLNEP  464 (481)
T ss_pred             CCCcEEEEecCCCCCC-HHHHHHHHHhcCCccceEEEEe---cCCCC---cceeEEEEcCCHHHHHHHHHHhcCCccCCC
Confidence            5788999999999865 8899999999998  7777632   22222   38999999999999999999999999875 


Q ss_pred             -ceeeceeeeee
Q 013598          269 -GKVQKQIRCEM  279 (439)
Q Consensus       269 -gKVEK~ikcE~  279 (439)
                       |++--.+|+.-
T Consensus       465 ~~~~~~~lkv~f  476 (481)
T TIGR01649       465 NGSAPYHLKVSF  476 (481)
T ss_pred             CCCccceEEEEe
Confidence             43333455443

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>smart00362 RRM_2 RNA recognition motif

Probab=99.12  E-value=3.7e-10  Score=78.59  Aligned_cols=68  Identities=28%  Similarity=0.355  Sum_probs=58.0

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      +|+|+|||...+ ..+|+.+|..+|.+..++..  .++    +.++|+|||+|.+.+.|.++++.++|..|.+.+
T Consensus         1 ~v~i~~l~~~~~-~~~l~~~~~~~g~v~~~~~~--~~~----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~   68 (72)
T smart00362        1 TLFVGNLPPDVT-EEDLKELFSKFGPIESVKIP--KDT----GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP   68 (72)
T ss_pred             CEEEcCCCCcCC-HHHHHHHHHhcCCEEEEEEe--cCC----CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence            689999999864 78999999999999998743  222    367999999999999999999999999987543

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.07  E-value=2.8e-10  Score=120.05  Aligned_cols=72  Identities=24%  Similarity=0.261  Sum_probs=65.3

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...-||||||||.+.+ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus       105 ~~~~rLfVGnLp~~~t-Ee~Lr~lF~~fG~I~sV~--I~~D~~Tg--kskGfAFVeF~s~e~A~~Ai~~lnG~~i~G  176 (612)
T TIGR01645       105 AIMCRVYVGSISFELR-EDTIRRAFDPFGPIKSIN--MSWDPATG--KHKGFAFVEYEVPEAAQLALEQMNGQMLGG  176 (612)
T ss_pred             cCCCEEEEcCCCCCCC-HHHHHHHHHccCCEEEEE--EeecCCCC--CcCCeEEEEeCcHHHHHHHHHhcCCeEEec
Confidence            3567999999999865 889999999999999998  56687887  899999999999999999999999999875

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>smart00360 RRM RNA recognition motif

Probab=99.06  E-value=6.5e-10  Score=76.90  Aligned_cols=65  Identities=31%  Similarity=0.432  Sum_probs=55.9

Q ss_pred             EcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          199 LLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       199 VGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      |+|||...+ ..+|+.+|..+|.|..+.+.  .++.|+  .++|||||+|.+.+.|.++++.++|..|.+
T Consensus         1 i~~l~~~~~-~~~l~~~f~~~g~v~~~~i~--~~~~~~--~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~   65 (71)
T smart00360        1 VGNLPPDVT-EEELRELFSKFGKIESVRLV--RDKDTG--KSKGFAFVEFESEEDAEKALEALNGKELDG   65 (71)
T ss_pred             CCCCCcccC-HHHHHHHHHhhCCEeEEEEE--eCCCCC--CCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence            689999864 78999999999999998743  444354  889999999999999999999999999864

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=4.3e-10  Score=111.78  Aligned_cols=109  Identities=18%  Similarity=0.252  Sum_probs=86.1

Q ss_pred             CCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHHH
Q 013598          134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDL  212 (439)
Q Consensus       134 PrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~kDL  212 (439)
                      +-||||+-|-+..-++++|++|...- .++++-+-.+.-+|.               .      |||.||++..+ .++|
T Consensus        36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~---------------~------~~i~nl~~~~~-~~~~   93 (369)
T KOG0123|consen   36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS---------------L------VFIKNLDESID-NKSL   93 (369)
T ss_pred             ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc---------------e------eeecCCCcccC-cHHH
Confidence            88999999999999999997776544 333333221111111               1      99999999854 8899


Q ss_pred             HHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          213 KSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       213 ~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ..+|..||.|++.+.+...+      ..||| ||.|++++.|+++|+++||..+.+-+|
T Consensus        94 ~d~f~~~g~ilS~kv~~~~~------g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki  145 (369)
T KOG0123|consen   94 YDTFSEFGNILSCKVATDEN------GSKGY-FVQFESEESAKKAIEKLNGMLLNGKKI  145 (369)
T ss_pred             HHHHHhhcCeeEEEEEEcCC------Cceee-EEEeCCHHHHHHHHHHhcCcccCCCee
Confidence            99999999999999665544      37999 999999999999999999999886433

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.02  E-value=7.8e-10  Score=107.40  Aligned_cols=70  Identities=21%  Similarity=0.325  Sum_probs=62.8

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      +.-+|||+|||...+ .++|.++|..+|.|..|+  ...++.||  .+||||||.|.+.++|.++|+ +||+.|.+
T Consensus        88 ~~~~l~V~nlp~~~~-~~~l~~~F~~~G~v~~v~--i~~d~~~~--~skg~afVeF~~~e~A~~Al~-l~g~~~~g  157 (457)
T TIGR01622        88 DDRTVFVLQLALKAR-ERDLYEFFSKVGKVRDVQ--CIKDRNSR--RSKGVAYVEFYDVESVIKALA-LTGQMLLG  157 (457)
T ss_pred             CCcEEEEeCCCCCCC-HHHHHHHHHhcCCeeEEE--EeecCCCC--CcceEEEEEECCHHHHHHHHH-hCCCEECC
Confidence            467899999999865 889999999999999998  56677786  899999999999999999997 89999875

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>PLN03120 nucleic acid binding protein; Provisional

Probab=98.97  E-value=2.1e-09  Score=103.94  Aligned_cols=76  Identities=18%  Similarity=0.194  Sum_probs=62.9

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK  273 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK  273 (439)
                      +-+|||||||.+.+ ++||+++|..+|.|.+|++.  .++.     .+|||||+|++.+.|..+|. +||..|.    .+
T Consensus         4 ~rtVfVgNLs~~tT-E~dLrefFS~~G~I~~V~I~--~d~~-----~~GfAFVtF~d~eaAe~All-LnG~~l~----gr   70 (260)
T PLN03120          4 VRTVKVSNVSLKAT-ERDIKEFFSFSGDIEYVEMQ--SENE-----RSQIAYVTFKDPQGAETALL-LSGATIV----DQ   70 (260)
T ss_pred             CCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEEe--ecCC-----CCCEEEEEeCcHHHHHHHHH-hcCCeeC----Cc
Confidence            56899999999865 89999999999999999954  3432     37999999999999999995 9999987    44


Q ss_pred             eeeeeeecC
Q 013598          274 QIRCEMVNS  282 (439)
Q Consensus       274 ~ikcE~~~~  282 (439)
                      .++|+.+..
T Consensus        71 ~V~Vt~a~~   79 (260)
T PLN03120         71 SVTITPAED   79 (260)
T ss_pred             eEEEEeccC
Confidence            556666543

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=98.95  E-value=3.3e-09  Score=111.33  Aligned_cols=73  Identities=22%  Similarity=0.312  Sum_probs=64.1

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      ..+.+|||+|||.+.+ +.+|..+|..+|.|+.++  ...+ +||  ..||||||+|.+.++|+++|+.+||..|..||
T Consensus        56 ~~~~~lFVgnLp~~~t-Ed~L~~~F~~~G~I~~vr--l~~D-~sG--~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr  128 (578)
T TIGR01648        56 GRGCEVFVGKIPRDLY-EDELVPLFEKAGPIYELR--LMMD-FSG--QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGR  128 (578)
T ss_pred             CCCCEEEeCCCCCCCC-HHHHHHHHHhhCCEEEEE--EEEC-CCC--CccceEEEEeCCHHHHHHHHHHcCCCeecCCc
Confidence            3578999999999864 889999999999999998  4444 565  78999999999999999999999999987664

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=98.94  E-value=6e-09  Score=72.86  Aligned_cols=70  Identities=27%  Similarity=0.399  Sum_probs=58.7

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      +|+|+|||.... ..+|+..|+.+|.+.++...  .++.+   ..+|+|||+|.+.+.|.++++.++|..+.+.+|
T Consensus         1 ~i~i~~l~~~~~-~~~i~~~~~~~g~i~~~~~~--~~~~~---~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~   70 (74)
T cd00590           1 TLFVGNLPPDVT-EEDLRELFSKFGKVESVRIV--RDKDT---KSKGFAFVEFEDEEDAEKALEALNGKELGGRPL   70 (74)
T ss_pred             CEEEeCCCCccC-HHHHHHHHHhcCCEEEEEEe--eCCCC---CcceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence            589999999854 78999999999999998744  33323   669999999999999999999999998765433

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]

Probab=98.84  E-value=3.7e-09  Score=105.90  Aligned_cols=74  Identities=22%  Similarity=0.344  Sum_probs=63.6

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      ---||+|.|+|+.-. +.||+++|..||-|+.|.  -+.|.  |  -.||||||||++.++|+|+=++|+|-.|.+-|||
T Consensus        95 ~pkRLhVSNIPFrFR-dpDL~aMF~kfG~VldVE--IIfNE--R--GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE  167 (376)
T KOG0125|consen   95 TPKRLHVSNIPFRFR-DPDLRAMFEKFGKVLDVE--IIFNE--R--GSKGFGFVTMENPADADRARAELHGTVVEGRKIE  167 (376)
T ss_pred             CCceeEeecCCcccc-CccHHHHHHhhCceeeEE--EEecc--C--CCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence            346999999999732 669999999999999997  45552  1  4699999999999999999999999999988877


Q ss_pred             c
Q 013598          273 K  273 (439)
Q Consensus       273 K  273 (439)
                      -
T Consensus       168 V  168 (376)
T KOG0125|consen  168 V  168 (376)
T ss_pred             E
Confidence            4

>PLN03121 nucleic acid binding protein; Provisional

Probab=98.84  E-value=9.8e-09  Score=98.77  Aligned_cols=77  Identities=19%  Similarity=0.239  Sum_probs=64.0

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      +.|-+|||+||+.+.. ++||+++|..+|.|.+|++.  .++     .|+|||||+|++.+.|..++ .|||+.|.    
T Consensus         3 ~~g~TV~V~NLS~~tT-E~dLrefFS~~G~I~~V~I~--~D~-----et~gfAfVtF~d~~aaetAl-lLnGa~l~----   69 (243)
T PLN03121          3 PGGYTAEVTNLSPKAT-EKDVYDFFSHCGAIEHVEII--RSG-----EYACTAYVTFKDAYALETAV-LLSGATIV----   69 (243)
T ss_pred             CCceEEEEecCCCCCC-HHHHHHHHHhcCCeEEEEEe--cCC-----CcceEEEEEECCHHHHHHHH-hcCCCeeC----
Confidence            5789999999999965 99999999999999999844  333     45799999999999999888 69999987    


Q ss_pred             eceeeeeeec
Q 013598          272 QKQIRCEMVN  281 (439)
Q Consensus       272 EK~ikcE~~~  281 (439)
                      +.+|.|.-+.
T Consensus        70 d~~I~It~~~   79 (243)
T PLN03121         70 DQRVCITRWG   79 (243)
T ss_pred             CceEEEEeCc
Confidence            4455555443

>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]

Probab=98.76  E-value=1.2e-08  Score=95.35  Aligned_cols=67  Identities=27%  Similarity=0.342  Sum_probs=59.5

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      +-..+||||||+...+ .+||+.+|..+|.+-+|-.|.  |+       -|||||.|++.-+|..+|..|+|..|-+
T Consensus         8 ~~~~kVYVGnL~~~a~-k~eLE~~F~~yG~lrsvWvAr--nP-------PGfAFVEFed~RDA~DAvr~LDG~~~cG   74 (195)
T KOG0107|consen    8 NGNTKVYVGNLGSRAT-KRELERAFSKYGPLRSVWVAR--NP-------PGFAFVEFEDPRDAEDAVRYLDGKDICG   74 (195)
T ss_pred             CCCceEEeccCCCCcc-hHHHHHHHHhcCcceeEEEee--cC-------CCceEEeccCcccHHHHHhhcCCccccC
Confidence            3467899999999854 779999999999999998554  54       7999999999999999999999999887

>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]

Probab=98.75  E-value=1.5e-08  Score=103.61  Aligned_cols=69  Identities=25%  Similarity=0.348  Sum_probs=64.6

Q ss_pred             cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      -.|||||+|.+.. +.+|..+|.++|.|++++  .+-|+.||  ..|||||+.|.+.++|.++|+.|||.+|.+
T Consensus        19 ~~v~vgnip~~~s-e~~l~~~~~~~g~v~s~~--~v~D~~tG--~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g   87 (435)
T KOG0108|consen   19 SSVFVGNIPYEGS-EEQLLSIFSGVGPVLSFR--LVYDRETG--KPKGFGFCEFTDEETAERAIRNLNGAEFNG   87 (435)
T ss_pred             cceEecCCCCccc-HHHHHHHHhccCccceee--ecccccCC--CcCceeeEecCchhhHHHHHHhcCCcccCC
Confidence            7899999999854 789999999999999999  77788898  999999999999999999999999999887

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]

Probab=98.75  E-value=7e-09  Score=108.37  Aligned_cols=142  Identities=15%  Similarity=0.144  Sum_probs=92.2

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhHHhhhhhccccc--cCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLE--NELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIH  209 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr~araaNld~~~--~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~  209 (439)
                      .+++|.+|+.|||...---++.=-++.--|+++=+-.+.  .|-+.+.    ..+-.+....-+..+||||||=+... +
T Consensus       218 ~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~~----s~a~~~k~~~~p~~rl~vgnLHfNit-e  292 (549)
T KOG0147|consen  218 RRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAANA----SPALQGKGFTGPMRRLYVGNLHFNIT-E  292 (549)
T ss_pred             hhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHHHhc----cccccccccccchhhhhhcccccCch-H
Confidence            379999999999986544333211111122222111000  0001001    01111112333455699999999632 7


Q ss_pred             HHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCCCC
Q 013598          210 RDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       210 kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~S~~  286 (439)
                      .+|+.+|..+|.|-.|-  ...+..||  .||||||++|-..++|..|.|++||..+.+    +.|++.+|..+-..
T Consensus       293 ~~lr~ifepfg~Ie~v~--l~~d~~tG--~skgfGfi~f~~~~~ar~a~e~lngfelAG----r~ikV~~v~~r~~~  361 (549)
T KOG0147|consen  293 DMLRGIFEPFGKIENVQ--LTKDSETG--RSKGFGFITFVNKEDARKALEQLNGFELAG----RLIKVSVVTERVDT  361 (549)
T ss_pred             HHHhhhccCcccceeee--eccccccc--cccCcceEEEecHHHHHHHHHHhccceecC----ceEEEEEeeeeccc
Confidence            78999999999999997  66776787  999999999999999999999999988774    45666666655433

>smart00361 RRM_1 RNA recognition motif

Probab=98.74  E-value=3.2e-08  Score=75.55  Aligned_cols=58  Identities=14%  Similarity=0.155  Sum_probs=45.8

Q ss_pred             HHHHHHHhc----cCCCeeEEe-eccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          209 HRDLKSAFK----GVPGIINII-PVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       209 ~kDL~~aFk----~vGgvisIk-pAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      +.||+..|.    .+|.|.+|. .....+..|+  ..||||||+|++.++|.++|+.+||+.|.+
T Consensus         2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~--~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g   64 (70)
T smart00361        2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYEN--HKRGNVYITFERSEDAARAIVDLNGRYFDG   64 (70)
T ss_pred             chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            357888887    999999984 3233332224  679999999999999999999999999774

>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=98.74  E-value=1.3e-08  Score=108.95  Aligned_cols=121  Identities=18%  Similarity=0.260  Sum_probs=96.0

Q ss_pred             CccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHHHHH
Q 013598          136 GFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDLKS  214 (439)
Q Consensus       136 GFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~kDL~~  214 (439)
                      |||.+.|++.+.+..+|+-|++.. +|..+-|-.+.+.|+.. ..+    ++...  ..+..|.|.|+|+.-. -++++.
T Consensus       561 GfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~-~gK----~~~~k--k~~tKIlVRNipFeAt-~rEVr~  632 (725)
T KOG0110|consen  561 GFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPAST-VGK----KKSKK--KKGTKILVRNIPFEAT-KREVRK  632 (725)
T ss_pred             ceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccc-ccc----ccccc--cccceeeeeccchHHH-HHHHHH
Confidence            999999999999999999999888 99988888777555422 122    11111  1288999999999732 679999


Q ss_pred             HhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          215 AFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       215 aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      +|..+|.+.+++++.-    +|-.+.||||||+|-+..+|.++++.|.+.-+-+
T Consensus       633 LF~aFGqlksvRlPKK----~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyG  682 (725)
T KOG0110|consen  633 LFTAFGQLKSVRLPKK----IGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYG  682 (725)
T ss_pred             HHhcccceeeeccchh----hcchhhccceeeeccCcHHHHHHHHhhcccceec
Confidence            9999999999987755    3435779999999999999999999988554443

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=98.69  E-value=3.6e-08  Score=101.83  Aligned_cols=83  Identities=19%  Similarity=0.291  Sum_probs=73.2

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      +-|..||||.||++. .+.||.-||..+|.|.-++  .-.++-+|  ..||+|||||.+.++|.++|+.||+++|.-|  
T Consensus        81 ~~G~EVfvGkIPrD~-~EdeLvplfEkiG~I~elR--LMmD~~sG--~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~G--  153 (506)
T KOG0117|consen   81 PRGCEVFVGKIPRDV-FEDELVPLFEKIGKIYELR--LMMDPFSG--DNRGYAFVTFCTKEEAQEAIKELNNYEIRPG--  153 (506)
T ss_pred             CCCceEEecCCCccc-cchhhHHHHHhccceeeEE--EeecccCC--CCcceEEEEeecHHHHHHHHHHhhCccccCC--
Confidence            689999999999985 4999999999999999999  44555576  7799999999999999999999999999988  


Q ss_pred             eceeeeeeecC
Q 013598          272 QKQIRCEMVNS  282 (439)
Q Consensus       272 EK~ikcE~~~~  282 (439)
                       |.|+||+--.
T Consensus       154 -K~igvc~Sva  163 (506)
T KOG0117|consen  154 -KLLGVCVSVA  163 (506)
T ss_pred             -CEeEEEEeee
Confidence             6788887543

>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]

Probab=98.69  E-value=4.1e-08  Score=96.96  Aligned_cols=79  Identities=22%  Similarity=0.261  Sum_probs=67.4

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      .|-.++|-||..+.. +.-|+++|..||.|++++  ++.|.-|  ++|||||||+..+-++|.-+|.-+||..+..--++
T Consensus       277 ~g~ciFvYNLspd~d-e~~LWQlFgpFGAv~nVK--virD~tt--nkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ  351 (360)
T KOG0145|consen  277 GGWCIFVYNLSPDAD-ESILWQLFGPFGAVTNVK--VIRDFTT--NKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ  351 (360)
T ss_pred             CeeEEEEEecCCCch-HhHHHHHhCcccceeeEE--EEecCCc--ccccceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence            467899999999854 667999999999999998  7777767  59999999999999999999999999998764344


Q ss_pred             ceee
Q 013598          273 KQIR  276 (439)
Q Consensus       273 K~ik  276 (439)
                      -+.|
T Consensus       352 VsFK  355 (360)
T KOG0145|consen  352 VSFK  355 (360)
T ss_pred             EEEe
Confidence            4433

>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]

Probab=98.53  E-value=2.5e-07  Score=87.15  Aligned_cols=131  Identities=16%  Similarity=0.258  Sum_probs=96.1

Q ss_pred             hhcCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCch
Q 013598          130 LENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNI  208 (439)
Q Consensus       130 l~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni  208 (439)
                      ..++++|||..-|++...++-++.=|.+-+ =+|++-++++.               +.....+.|.+++||||-...+ 
T Consensus        46 v~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas---------------~~~~nl~vganlfvgNLd~~vD-  109 (203)
T KOG0131|consen   46 VTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS---------------AHQKNLDVGANLFVGNLDPEVD-  109 (203)
T ss_pred             hcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc---------------cccccccccccccccccCcchh-
Confidence            356899999999998888877775555544 44444444322               1112345669999999999632 


Q ss_pred             HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCC
Q 013598          209 HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSS  283 (439)
Q Consensus       209 ~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~  283 (439)
                      ++-|...|..+|-+++- |..--+..||  ..+||||+.|.+.+.++++|+.+|||-+.    -+++.+..+...
T Consensus       110 e~~L~dtFsafG~l~~~-P~i~rd~~tg--~~~~~g~i~~~sfeasd~ai~s~ngq~l~----nr~itv~ya~k~  177 (203)
T KOG0131|consen  110 EKLLYDTFSAFGVLISP-PKIMRDPDTG--NPKGFGFINYASFEASDAAIGSMNGQYLC----NRPITVSYAFKK  177 (203)
T ss_pred             HHHHHHHHHhccccccC-CcccccccCC--CCCCCeEEechhHHHHHHHHHHhccchhc----CCceEEEEEEec
Confidence            66799999999987763 3333555576  77999999999999999999999999987    566666666543

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=1.9e-07  Score=92.26  Aligned_cols=82  Identities=21%  Similarity=0.325  Sum_probs=71.3

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK  273 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK  273 (439)
                      -++|+||.|..... -.+|+++|..||+|-.-+  ++.|.-|+  +.||+|||.|-..++|.++|+++|||=|.    -+
T Consensus        62 hfhvfvgdls~eI~-~e~lr~aF~pFGevS~ak--virD~~T~--KsKGYgFVSf~~k~dAEnAI~~MnGqWlG----~R  132 (321)
T KOG0148|consen   62 HFHVFVGDLSPEID-NEKLREAFAPFGEVSDAK--VIRDMNTG--KSKGYGFVSFPNKEDAENAIQQMNGQWLG----RR  132 (321)
T ss_pred             ceeEEehhcchhcc-hHHHHHHhccccccccce--EeecccCC--cccceeEEeccchHHHHHHHHHhCCeeec----cc
Confidence            78999999999732 668999999999999988  88888897  99999999999999999999999999987    56


Q ss_pred             eeeeeeecCCC
Q 013598          274 QIRCEMVNSSS  284 (439)
Q Consensus       274 ~ikcE~~~~~S  284 (439)
                      +||---+--+.
T Consensus       133 ~IRTNWATRKp  143 (321)
T KOG0148|consen  133 TIRTNWATRKP  143 (321)
T ss_pred             eeeccccccCc
Confidence            77766655444

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=98.48  E-value=6.2e-07  Score=94.83  Aligned_cols=69  Identities=28%  Similarity=0.375  Sum_probs=61.2

Q ss_pred             CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh
Q 013598          188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF  261 (439)
Q Consensus       188 ~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~  261 (439)
                      .+....|-+|+|.|||.++. +.+|...|..||.|-...  .+.++-||  -.+|=|||.|.+..+|..+|+..
T Consensus       286 ~en~~~~~tVFvRNL~fD~t-EEel~~~fskFG~v~ya~--iV~~k~T~--~skGtAFv~Fkt~~~~~~ci~~A  354 (678)
T KOG0127|consen  286 RENITEGKTVFVRNLPFDTT-EEELKEHFSKFGEVKYAI--IVKDKDTG--HSKGTAFVKFKTQIAAQNCIEAA  354 (678)
T ss_pred             cccccccceEEEecCCcccc-HHHHHHHHHhhccceeEE--EEeccCCC--CcccceEEEeccHHHHHHHHHhc
Confidence            45556899999999999975 889999999999999888  45666697  88999999999999999999987

>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]

Probab=98.46  E-value=2.5e-07  Score=89.39  Aligned_cols=78  Identities=23%  Similarity=0.367  Sum_probs=64.2

Q ss_pred             cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeece
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQ  274 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~  274 (439)
                      ..||||+||-.+. ..+|+.-|..||+|+-..  ++.|+-||  .|||+|||||.+.+.|.|+.+-  -..|-.||.   
T Consensus        13 TKifVggL~w~T~-~~~l~~yFeqfGeI~eav--vitd~~t~--rskGyGfVTf~d~~aa~rAc~d--p~piIdGR~---   82 (247)
T KOG0149|consen   13 TKIFVGGLAWETH-KETLRRYFEQFGEIVEAV--VITDKNTG--RSKGYGFVTFRDAEAATRACKD--PNPIIDGRK---   82 (247)
T ss_pred             EEEEEcCcccccc-hHHHHHHHHHhCceEEEE--EEeccCCc--cccceeeEEeecHHHHHHHhcC--CCCcccccc---
Confidence            4699999999853 558999999999999987  89999998  9999999999999999999984  444545532   


Q ss_pred             eeeeeecC
Q 013598          275 IRCEMVNS  282 (439)
Q Consensus       275 ikcE~~~~  282 (439)
                      --|-+|--
T Consensus        83 aNcnlA~l   90 (247)
T KOG0149|consen   83 ANCNLASL   90 (247)
T ss_pred             cccchhhh
Confidence            34666654

>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=98.43  E-value=3.3e-08  Score=93.47  Aligned_cols=72  Identities=24%  Similarity=0.269  Sum_probs=66.1

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      -++.-|||||||.+.+ +-||-.+|..+|+++.|.  .+.+++||  +.|||||+.+++--..--+|.-|||..|.+
T Consensus        33 kdsA~Iyiggl~~~Lt-EgDil~VFSqyGe~vdin--LiRDk~TG--KSKGFaFLcYEDQRSTILAVDN~NGiki~g  104 (219)
T KOG0126|consen   33 KDSAYIYIGGLPYELT-EGDILCVFSQYGEIVDIN--LIRDKKTG--KSKGFAFLCYEDQRSTILAVDNLNGIKILG  104 (219)
T ss_pred             ccceEEEECCCccccc-CCcEEEEeeccCceEEEE--EEecCCCC--cccceEEEEecCccceEEEEeccCCceecc
Confidence            4788999999999854 779999999999999998  78888898  999999999999998889999999999985

>PF13893 RRM_5: RNA recognition motif

Probab=98.41  E-value=1.1e-06  Score=63.68  Aligned_cols=55  Identities=22%  Similarity=0.373  Sum_probs=43.8

Q ss_pred             HHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeee
Q 013598          212 LKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEM  279 (439)
Q Consensus       212 L~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~  279 (439)
                      |..+|..+|.|.+|.  ...++       +|||||+|.+.++|..+++.|||..|.+    ++++|+.
T Consensus         1 L~~~f~~fG~V~~i~--~~~~~-------~~~a~V~f~~~~~A~~a~~~l~~~~~~g----~~l~V~~   55 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIK--IFKKK-------RGFAFVEFASVEDAQKAIEQLNGRQFNG----RPLKVSY   55 (56)
T ss_dssp             HHHHHTTTS-EEEEE--EETTS-------TTEEEEEESSHHHHHHHHHHHTTSEETT----EEEEEEE
T ss_pred             ChHHhCCcccEEEEE--EEeCC-------CCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEE
Confidence            678999999999997  33331       6999999999999999999999999864    3455543

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]

Probab=98.40  E-value=5.9e-07  Score=84.74  Aligned_cols=82  Identities=18%  Similarity=0.305  Sum_probs=67.4

Q ss_pred             CCCCccEEEEcCCCCCCch-HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          190 DMPSGIRVRLLNLPKKKNI-HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni-~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .+.-+.+||||||+.+  + +.=|.+||-.+|.|++|+.+..  |-|.  +.+||||+.|.++|+|+=+|..||+..+- 
T Consensus         5 ~rnqd~tiyvgnld~k--vs~~~l~EL~iqagpVv~i~iPkD--rv~~--~~qGygF~Ef~~eedadYAikiln~VkLY-   77 (203)
T KOG0131|consen    5 ERNQDATLYVGNLDEK--VSEELLYELFIQAGPVVNLHIPKD--RVTQ--KHQGYGFAEFRTEEDADYAIKILNMVKLY-   77 (203)
T ss_pred             ccCCCceEEEecCCHH--HHHHHHHHHHHhcCceeeeecchh--hhcc--cccceeEEEEechhhhHHHHHHHHHHHhc-
Confidence            3456789999999998  5 4569999999999999996654  4463  78999999999999999999999966654 


Q ss_pred             ceeeceeeeeeec
Q 013598          269 GKVQKQIRCEMVN  281 (439)
Q Consensus       269 gKVEK~ikcE~~~  281 (439)
                      |   |+|+.-++.
T Consensus        78 g---rpIrv~kas   87 (203)
T KOG0131|consen   78 G---RPIRVNKAS   87 (203)
T ss_pred             C---ceeEEEecc
Confidence            3   677777665

>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=98.40  E-value=7.9e-07  Score=78.43  Aligned_cols=65  Identities=23%  Similarity=0.165  Sum_probs=56.3

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      -|||.|||++.. ..+.-++|..+|.|..|++-..++  |     ||=|||.+++..+|.++++.++|+.+..
T Consensus        20 iLyirNLp~~IT-seemydlFGkyg~IrQIRiG~~k~--T-----rGTAFVVYedi~dAk~A~dhlsg~n~~~   84 (124)
T KOG0114|consen   20 ILYIRNLPFKIT-SEEMYDLFGKYGTIRQIRIGNTKE--T-----RGTAFVVYEDIFDAKKACDHLSGYNVDN   84 (124)
T ss_pred             eEEEecCCcccc-HHHHHHHhhcccceEEEEecCccC--c-----CceEEEEehHhhhHHHHHHHhcccccCC
Confidence            489999999832 668999999999999998444443  5     8999999999999999999999999775

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=5.4e-07  Score=90.02  Aligned_cols=127  Identities=20%  Similarity=0.234  Sum_probs=94.1

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhHH-------hhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSRE-------AQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKK  205 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr~-------araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk  205 (439)
                      ++||||.+-++.+.-+.++++.|.+.-.       +++.+  +....+.-.++.  ......+.++..+..|||.||+..
T Consensus       206 ~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk--k~e~~~~l~~~~--~~~~~~~~~~~~~~nl~vknld~~  281 (369)
T KOG0123|consen  206 KSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK--KSEREAELKRKF--EQEFAKRSVSLQGANLYVKNLDET  281 (369)
T ss_pred             CCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc--chhhHHHHhhhh--HhhhhhccccccccccccccCccc
Confidence            7999999999999999999999988542       11222  000000000000  011224556788999999999997


Q ss_pred             CchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          206 KNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       206 ~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      .+ +..|+..|..+|.|+++++-+..+-     .-+|||||-|.+.++|.+++..+||..+...
T Consensus       282 ~~-~e~L~~~f~~~GeI~s~kv~~~~~g-----~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k  339 (369)
T KOG0123|consen  282 LS-DEKLRKIFSSFGEITSAKVMVDENG-----KSKGFGFVEFSSPEEAKKAMTEMNGRLIGGK  339 (369)
T ss_pred             cc-hhHHHHHHhcccceeeEEEEeccCC-----CccceEEEEcCCHHHHHHHHHhhChhhhcCC
Confidence            43 7789999999999999985555443     5699999999999999999999999998853

>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]

Probab=98.33  E-value=8.6e-07  Score=87.87  Aligned_cols=129  Identities=16%  Similarity=0.191  Sum_probs=93.3

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR  210 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~k  210 (439)
                      -.+-|||.+-..+...++|++--..+-| ....|-  -+-+||...              +--+.-|||.-||+.+. .+
T Consensus        80 GqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIK--VSyARPSs~--------------~Ik~aNLYvSGlPktMt-qk  142 (360)
T KOG0145|consen   80 GQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIK--VSYARPSSD--------------SIKDANLYVSGLPKTMT-QK  142 (360)
T ss_pred             ccccccceeeecChHHHHHHHhhhcceeeccceEE--EEeccCChh--------------hhcccceEEecCCccch-HH
Confidence            3677999999999988888886555544 211111  112222211              11244699999999875 88


Q ss_pred             HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCC
Q 013598          211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSS  283 (439)
Q Consensus       211 DL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~  283 (439)
                      ||+++|..+|.||.-++-+...  ||  ..||-||+-|..+++|+++|..|||+.-.+-  -.+|.+..+|--
T Consensus       143 elE~iFs~fGrIItSRiL~dqv--tg--~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~--tepItVKFannP  209 (360)
T KOG0145|consen  143 ELEQIFSPFGRIITSRILVDQV--TG--LSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC--TEPITVKFANNP  209 (360)
T ss_pred             HHHHHHHHhhhhhhhhhhhhcc--cc--eecceeEEEecchhHHHHHHHhccCCCCCCC--CCCeEEEecCCc
Confidence            9999999999999888544444  76  9999999999999999999999999986653  345666666543

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=98.27  E-value=1.7e-06  Score=89.86  Aligned_cols=124  Identities=15%  Similarity=0.206  Sum_probs=87.1

Q ss_pred             hcCCCCccccccccchHHHHHHHHHHhhH---HhhhhhccccccCCCCCCCCCCCCCCC-CCCCCCCccEEEEcCCCCCC
Q 013598          131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR---EAQMANINKLENELLKPSPKKDEPKKK-EPEDMPSGIRVRLLNLPKKK  206 (439)
Q Consensus       131 ~nKPrGFG~GK~YdT~iEeKlLeEM~~sr---~araaNld~~~~~P~~~n~~k~~~akk-~~e~~~dgvRVrVGNLPkk~  206 (439)
                      +.|.|||-.+..|+-..+..+=+-|-.++   .+-++-+|-+            +.... ..+...--=-|||.|||..+
T Consensus       204 k~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWA------------ep~~e~ded~ms~VKvLYVRNL~~~t  271 (506)
T KOG0117|consen  204 KTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWA------------EPEEEPDEDTMSKVKVLYVRNLMEST  271 (506)
T ss_pred             cccccceEEEEeecchhHHHHHhhccCCceeecCCcceeecc------------CcccCCChhhhhheeeeeeeccchhh
Confidence            45899999999999988877766555544   2222222211            11112 11222333458999999985


Q ss_pred             chHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCC
Q 013598          207 NIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSS  283 (439)
Q Consensus       207 ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~  283 (439)
                      + +.-|+++|..+|.|.||+            +-|-||||+|..+++|-++++-+||+.|.+-    .|-|-+|+..
T Consensus       272 T-eE~lk~~F~~~G~veRVk------------k~rDYaFVHf~eR~davkAm~~~ngkeldG~----~iEvtLAKP~  331 (506)
T KOG0117|consen  272 T-EETLKKLFNEFGKVERVK------------KPRDYAFVHFAEREDAVKAMKETNGKELDGS----PIEVTLAKPV  331 (506)
T ss_pred             h-HHHHHHHHHhccceEEee------------cccceeEEeecchHHHHHHHHHhcCceecCc----eEEEEecCCh
Confidence            3 667999999999999997            2255999999999999999999999999864    3444455443

>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]

Probab=98.25  E-value=1.3e-06  Score=86.95  Aligned_cols=75  Identities=23%  Similarity=0.333  Sum_probs=68.3

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .+.|+|-.|+|-+||++.. +.+|-..|-.||.||+-+  +--||-|.  ..|-||||.|.+.-.|.++|..+||+.|.-
T Consensus       280 reGPeGCNlFIYHLPQEFg-DaEliQmF~PFGhivSaK--VFvDRATN--QSKCFGFVSfDNp~SaQaAIqAMNGFQIGM  354 (371)
T KOG0146|consen  280 REGPEGCNLFIYHLPQEFG-DAELIQMFLPFGHIVSAK--VFVDRATN--QSKCFGFVSFDNPASAQAAIQAMNGFQIGM  354 (371)
T ss_pred             hcCCCcceEEEEeCchhhc-cHHHHHHhccccceeeee--eeehhccc--cccceeeEecCCchhHHHHHHHhcchhhhh
Confidence            4568999999999999833 889999999999999998  77888894  888899999999999999999999999986

>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]

Probab=98.23  E-value=1.5e-06  Score=86.81  Aligned_cols=81  Identities=21%  Similarity=0.329  Sum_probs=69.4

Q ss_pred             cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeece
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQ  274 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~  274 (439)
                      +.|+|||||.+.. +++|+.||..+|-|+---  .++|          +|||+++++..|.-+|.-|+|.++.    ++.
T Consensus         3 ~KLFIGNLp~~~~-~~elr~lFe~ygkVlECD--IvKN----------YgFVHiEdktaaedairNLhgYtLh----g~n   65 (346)
T KOG0109|consen    3 VKLFIGNLPREAT-EQELRSLFEQYGKVLECD--IVKN----------YGFVHIEDKTAAEDAIRNLHGYTLH----GVN   65 (346)
T ss_pred             cchhccCCCcccc-hHHHHHHHHhhCceEeee--eecc----------cceEEeecccccHHHHhhcccceec----ceE
Confidence            5789999999864 999999999999998875  4444          8999999999999999999999999    678


Q ss_pred             eeeeeecCCCCCCCCCCC
Q 013598          275 IRCEMVNSSSSNSVDGHS  292 (439)
Q Consensus       275 ikcE~~~~~S~~~~~~~s  292 (439)
                      |.+|...++|+.++...-
T Consensus        66 InVeaSksKsk~stkl~v   83 (346)
T KOG0109|consen   66 INVEASKSKSKASTKLHV   83 (346)
T ss_pred             EEEEeccccCCCcccccc
Confidence            888988888776665543

>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]

Probab=98.23  E-value=1.3e-06  Score=83.37  Aligned_cols=72  Identities=25%  Similarity=0.212  Sum_probs=60.7

Q ss_pred             ccEEEEcCCCCCCch-HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc--ce
Q 013598          194 GIRVRLLNLPKKKNI-HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF--GK  270 (439)
Q Consensus       194 gvRVrVGNLPkk~ni-~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f--gK  270 (439)
                      .-++||||||-+  | ++|++.||-.+|.|.-|.   .+|+    |-.-+||||.|++.-+|+.+|..-+|..+-+  +|
T Consensus         6 ~~~iyvGNLP~d--iRekeieDlFyKyg~i~~ie---LK~r----~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLR   76 (241)
T KOG0105|consen    6 SRRIYVGNLPGD--IREKEIEDLFYKYGRIREIE---LKNR----PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLR   76 (241)
T ss_pred             cceEEecCCCcc--hhhccHHHHHhhhcceEEEE---eccC----CCCCCeeEEEecCccchhhhhhcccccccCcceEE
Confidence            458999999997  6 789999999999999994   5565    2336799999999999999999999999886  55


Q ss_pred             eece
Q 013598          271 VQKQ  274 (439)
Q Consensus       271 VEK~  274 (439)
                      ||-+
T Consensus        77 VEfp   80 (241)
T KOG0105|consen   77 VEFP   80 (241)
T ss_pred             EEec
Confidence            5543

>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]

Probab=98.20  E-value=4e-06  Score=80.26  Aligned_cols=89  Identities=26%  Similarity=0.301  Sum_probs=69.8

Q ss_pred             CCCCCccEEEEcCCCCCCch---HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCce
Q 013598          189 EDMPSGIRVRLLNLPKKKNI---HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQI  265 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni---~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~  265 (439)
                      +..+.+ +|||.||+.+.+.   .+-|..||..+|.|+-|.  +.   ||  ++-||=|||.|++.+.|-+++..++|..
T Consensus         5 ~~~pn~-TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~--a~---kt--~KmRGQA~VvFk~~~~As~A~r~l~gfp   76 (221)
T KOG4206|consen    5 SVNPNG-TLYINNLNEKIKKDELKRSLYLLFSQFGKILDIS--AF---KT--PKMRGQAFVVFKETEAASAALRALQGFP   76 (221)
T ss_pred             ccCCCc-eEeehhccccccHHHHHHHHHHHHHhhCCeEEEE--ec---CC--CCccCceEEEecChhHHHHHHHHhcCCc
Confidence            345566 9999999998543   223555999999999996  33   34  3779999999999999999999999999


Q ss_pred             eccceeeceeeeeeecCCCCCCCC
Q 013598          266 IAFGKVQKQIRCEMVNSSSSNSVD  289 (439)
Q Consensus       266 ~~fgKVEK~ikcE~~~~~S~~~~~  289 (439)
                      |-    .|+++++-|...|..-..
T Consensus        77 Fy----gK~mriqyA~s~sdii~~   96 (221)
T KOG4206|consen   77 FY----GKPMRIQYAKSDSDIIAQ   96 (221)
T ss_pred             cc----CchhheecccCccchhhc
Confidence            65    577777777776665554

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=98.20  E-value=1.8e-06  Score=89.38  Aligned_cols=122  Identities=15%  Similarity=0.193  Sum_probs=89.5

Q ss_pred             hcCCCCccccccccchHHHHHHHHHHhhHHhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 013598          131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR  210 (439)
Q Consensus       131 ~nKPrGFG~GK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~k  210 (439)
                      -+-++|.=.+++|+..-++++....---           +.=|.-.-|.+-..|-..-++.++...||||-|+++++ +.
T Consensus        72 t~~s~gcCFv~~~trk~a~~a~~Alhn~-----------ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~t-e~  139 (510)
T KOG0144|consen   72 TGQSKGCCFVKYYTRKEADEAINALHNQ-----------KTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCT-EN  139 (510)
T ss_pred             cCcccceEEEEeccHHHHHHHHHHhhcc-----------cccCCCCcceeecccchhhhccccchhhhhhhcccccc-HH
Confidence            4578999999999998888777443221           11233223332000111112235788999999999987 99


Q ss_pred             HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       211 DL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      |++++|..||-|-.+++....+     .+|||-|||+|.+.+.|-.+|+.+||..-+-|
T Consensus       140 evr~iFs~fG~Ied~~ilrd~~-----~~sRGcaFV~fstke~A~~Aika~ng~~tmeG  193 (510)
T KOG0144|consen  140 EVREIFSRFGHIEDCYILRDPD-----GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEG  193 (510)
T ss_pred             HHHHHHHhhCccchhhheeccc-----ccccceeEEEEehHHHHHHHHHhhccceeecc
Confidence            9999999999999998666555     48999999999999999999999999876654

>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]

Probab=98.14  E-value=3.1e-06  Score=81.64  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=64.7

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...-+.|.|-||-.-+. ..||..+|...|.|.-|+++....  |+  ..||||||-|....+|..+++.+.|..+.+
T Consensus        10 v~gm~SLkVdNLTyRTs-pd~LrrvFekYG~vgDVyIPrdr~--Tr--~sRgFaFVrf~~k~daedA~damDG~~ldg   82 (256)
T KOG4207|consen   10 VEGMTSLKVDNLTYRTS-PDDLRRVFEKYGRVGDVYIPRDRY--TR--QSRGFAFVRFHDKRDAEDALDAMDGAVLDG   82 (256)
T ss_pred             cccceeEEecceeccCC-HHHHHHHHHHhCcccceecccccc--cc--cccceeEEEeeecchHHHHHHhhcceeecc
Confidence            34557899999999764 789999999999999999776555  87  889999999999999999999999999886

>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]

Probab=98.12  E-value=4.1e-06  Score=76.88  Aligned_cols=93  Identities=17%  Similarity=0.272  Sum_probs=78.6

Q ss_pred             CCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          187 EPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       187 ~~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      +|.++.+|--|+|++.-.+.. +.|+...|..+|.|-+|.  ...+|.||  -.||+|.|.+++-++|.++|+.+||..+
T Consensus        65 gPqrSVEGwIi~VtgvHeEat-Eedi~d~F~dyGeiKNih--LNLDRRtG--y~KGYaLvEYet~keAq~A~~~~Ng~~l  139 (170)
T KOG0130|consen   65 GPQRSVEGWIIFVTGVHEEAT-EEDIHDKFADYGEIKNIH--LNLDRRTG--YVKGYALVEYETLKEAQAAIDALNGAEL  139 (170)
T ss_pred             CCccceeeEEEEEeccCcchh-HHHHHHHHhhccccccee--eccccccc--cccceeeeehHhHHHHHHHHHhccchhh
Confidence            667788999999999999853 789999999999999998  66778897  9999999999999999999999999999


Q ss_pred             ccceeeceeeeeeecCCCCC
Q 013598          267 AFGKVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       267 ~fgKVEK~ikcE~~~~~S~~  286 (439)
                      ++-.|+  .-.|.+.+.+..
T Consensus       140 l~q~v~--VDw~Fv~gp~~g  157 (170)
T KOG0130|consen  140 LGQNVS--VDWCFVKGPERG  157 (170)
T ss_pred             hCCcee--EEEEEecCCccC
Confidence            985543  344555554433

>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]

Probab=98.09  E-value=8.7e-06  Score=77.66  Aligned_cols=109  Identities=20%  Similarity=0.241  Sum_probs=81.5

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      ..--+||+.+|.-.. ...+...|..+||.++.+ -.+.|++||  -.||||||-|++.++|.=+-|-+|++-++    |
T Consensus        48 ~~g~~~~~~~p~g~~-e~~~~~~~~q~~g~v~r~-rlsRnkrTG--NSKgYAFVEFEs~eVA~IaAETMNNYLl~----e  119 (214)
T KOG4208|consen   48 IEGVVYVDHIPHGFF-ETEILNYFRQFGGTVTRF-RLSRNKRTG--NSKGYAFVEFESEEVAKIAAETMNNYLLM----E  119 (214)
T ss_pred             Cccceeecccccchh-HHHHhhhhhhcCCeeEEE-EeecccccC--CcCceEEEEeccHHHHHHHHHHhhhhhhh----h
Confidence            344589999999742 778999999996655554 255899998  99999999999999999999999999876    8


Q ss_pred             ceeeeeeecCCCCCCCCCCCCCCCCCCCccccCCccc
Q 013598          273 KQIRCEMVNSSSSNSVDGHSSDDTSGYPKIKVYGFEE  309 (439)
Q Consensus       273 K~ikcE~~~~~S~~~~~~~s~~s~~~~p~~~v~~~ee  309 (439)
                      +.+.|-+....-..+....+...+.--|..+|+.-..
T Consensus       120 ~lL~c~vmppe~~v~~~~~k~~~~~~~~~~~~~~k~~  156 (214)
T KOG4208|consen  120 HLLECHVMPPEQKVEKNLKKVSGTPFKPGKTVPIKRL  156 (214)
T ss_pred             heeeeEEeCchhhhhhhhhhhcCCcCCCCCccccccc
Confidence            8999999887744444444444444444445544443

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=98.09  E-value=3.9e-06  Score=87.06  Aligned_cols=78  Identities=23%  Similarity=0.350  Sum_probs=69.2

Q ss_pred             CCCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCce
Q 013598          186 KEPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQI  265 (439)
Q Consensus       186 k~~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~  265 (439)
                      .+....++|--++|.|||++- -++||-+.|..||+|++.+  +--++-|+  ..|=|+||++++.-.|..+|..+||..
T Consensus       416 ~~q~eGpeGanlfiyhlPqef-gdq~l~~~f~pfG~Vlsak--vfidk~tn--lskcfgfvSyen~~sa~~aI~amngfQ  490 (510)
T KOG0144|consen  416 NGQVEGPEGANLFIYHLPQEF-GDQDLIATFQPFGGVLSAK--VFIDKVTN--LSKCFGFVSYENAQSAQNAISAMNGFQ  490 (510)
T ss_pred             CccccCCCccceeeeeCchhh-hhHHHHHHhccccceeEEE--EEEecccC--HhhhcCcccccchhhhHHHHHHhcchh
Confidence            355667899999999999983 2999999999999999998  66666686  888899999999999999999999999


Q ss_pred             ecc
Q 013598          266 IAF  268 (439)
Q Consensus       266 ~~f  268 (439)
                      |..
T Consensus       491 ig~  493 (510)
T KOG0144|consen  491 IGS  493 (510)
T ss_pred             hcc
Confidence            885

>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]

Probab=98.01  E-value=1.2e-05  Score=73.22  Aligned_cols=78  Identities=27%  Similarity=0.342  Sum_probs=69.0

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      .+.+||||||+.-+. +.-+.+||...|.|-+|.--...++||   -| ||.||-|-+.++|..++.-+||..+-    +
T Consensus        35 ~S~tvyVgNlSfytt-EEqiyELFs~cG~irriiMGLdr~kkt---pC-GFCFVeyy~~~dA~~AlryisgtrLd----d  105 (153)
T KOG0121|consen   35 KSCTVYVGNLSFYTT-EEQIYELFSKCGDIRRIIMGLDRFKKT---PC-GFCFVEYYSRDDAEDALRYISGTRLD----D  105 (153)
T ss_pred             hcceEEEeeeeeeec-HHHHHHHHHhccchheeEeccccCCcC---cc-ceEEEEEecchhHHHHHHHhccCccc----c
Confidence            578999999999864 777999999999999999888899888   44 99999999999999999999999887    7


Q ss_pred             ceeeeee
Q 013598          273 KQIRCEM  279 (439)
Q Consensus       273 K~ikcE~  279 (439)
                      ++|++..
T Consensus       106 r~ir~D~  112 (153)
T KOG0121|consen  106 RPIRIDW  112 (153)
T ss_pred             cceeeec
Confidence            7777643

>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=97.98  E-value=1.8e-05  Score=85.45  Aligned_cols=159  Identities=18%  Similarity=0.257  Sum_probs=106.3

Q ss_pred             CccccccccchHHHHHHhhcCCCCc-cccccccchHHHHHHHHHHhhH-Hhhhh--------------hccccccCCCCC
Q 013598          113 NDEDEGMMISFGKMRRWLENKPRGF-GEGKVYDTSIEDKLLQEIQQSR-EAQMA--------------NINKLENELLKP  176 (439)
Q Consensus       113 ~~~dE~~~~~~~~M~~wl~nKPrGF-G~GK~YdT~iEeKlLeEM~~sr-~araa--------------Nld~~~~~P~~~  176 (439)
                      .++--++|.+|+.+.+-|-. |.|- -++.|-++.-+.++++=|+.++ +..+.              +-+...+.+...
T Consensus       399 ~~elt~~F~~fG~i~rvllp-~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~  477 (725)
T KOG0110|consen  399 SEELTEAFLRFGEIGRVLLP-PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSK  477 (725)
T ss_pred             cHHHHHHhhcccccceeecC-cccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccc
Confidence            34445678888888777666 7777 4789999999999999999876 22222              111122222111


Q ss_pred             ---CCCCCCCCCCC-----------------CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCC
Q 013598          177 ---SPKKDEPKKKE-----------------PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTK  236 (439)
Q Consensus       177 ---n~~k~~~akk~-----------------~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTg  236 (439)
                         ++.....+..+                 .+.-..-.+|||.||+.++. ..+|+..|...|.|++|.+..-.+++- 
T Consensus       478 ~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt-~e~l~~~F~k~G~VlS~~I~kkkd~~~-  555 (725)
T KOG0110|consen  478 MEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTT-LEDLEDLFSKQGTVLSIEISKKKDPAN-  555 (725)
T ss_pred             cccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccc-hhHHHHHHHhcCeEEEEEEeccccccc-
Confidence               11100000000                 01111223499999999964 779999999999999998776666533 


Q ss_pred             CCcccceEEEeecCHHHHHHHHHHhCCceeccceeece
Q 013598          237 DPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQ  274 (439)
Q Consensus       237 Dp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~  274 (439)
                      -....|||||-|.+.++|.++++.++|.-+.+-+|+-.
T Consensus       556 k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk  593 (725)
T KOG0110|consen  556 KYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK  593 (725)
T ss_pred             cccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence            14567999999999999999999999999997655533

>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]

Probab=97.97  E-value=7.5e-06  Score=84.18  Aligned_cols=71  Identities=24%  Similarity=0.263  Sum_probs=63.8

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .=.|||||.+.++.. +..++.+|..||-|-+|.  -+-+.-|+  +.||||||.++-.|.|.-+.|++||+.+.+
T Consensus       112 iMcRvYVGSIsfEl~-EDtiR~AF~PFGPIKSIn--MSWDp~T~--kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG  182 (544)
T KOG0124|consen  112 IMCRVYVGSISFELR-EDTIRRAFDPFGPIKSIN--MSWDPATG--KHKGFAFVEYEVPEAAQLALEQMNGQMLGG  182 (544)
T ss_pred             HhHheeeeeeEEEec-hHHHHhhccCCCCcceee--cccccccc--cccceEEEEEeCcHHHHHHHHHhccccccC
Confidence            456999999999832 556999999999999997  78888897  999999999999999999999999999876

>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]

Probab=97.88  E-value=2.2e-05  Score=76.36  Aligned_cols=122  Identities=16%  Similarity=0.123  Sum_probs=93.7

Q ss_pred             CCCCccccccccchHHHHHHHHHHh-hHHhhhhhccccccCCCCC-CCCCCCCCCCCCCCCCCccEEE-EcCCCCCCchH
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQ-SREAQMANINKLENELLKP-SPKKDEPKKKEPEDMPSGIRVR-LLNLPKKKNIH  209 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~-sr~araaNld~~~~~P~~~-n~~k~~~akk~~e~~~dgvRVr-VGNLPkk~ni~  209 (439)
                      ..+||++..|...+-....|++++. .-.+...+.++.+.++..+ |+.       ....+-...+++ |+||+.... +
T Consensus       128 ~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~-------~~~~~~~s~~~~~~~~~~f~~~-~  199 (285)
T KOG4210|consen  128 SSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRPKNKL-------SRLSSGPSDTIFFVGELDFSLT-R  199 (285)
T ss_pred             ccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccccchh-------cccccCccccceeecccccccc-h
Confidence            7899999999999999999999986 3477777777766665311 111       112223455566 999999743 6


Q ss_pred             HHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          210 RDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       210 kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      .||...|..+|.|.+|+  .-.++.|+  .|+|||||.|.....+...+.- ++..+.
T Consensus       200 d~~~~~~~~~~~i~~~r--~~~~~~s~--~~kg~a~~~~~~~~~~~~~~~~-~~~~~~  252 (285)
T KOG4210|consen  200 DDLKEHFVSSGEITSVR--LPTDEESG--DSKGFAYVDFSAGNSKKLALND-QTRSIG  252 (285)
T ss_pred             HHHhhhccCcCcceeec--cCCCCCcc--chhhhhhhhhhhchhHHHHhhc-ccCccc
Confidence            68999999999999999  66677786  9999999999999999998886 555544

>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]

Probab=97.83  E-value=5.1e-05  Score=73.25  Aligned_cols=83  Identities=27%  Similarity=0.376  Sum_probs=67.5

Q ss_pred             cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeece
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQ  274 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~  274 (439)
                      ++|+|.|||... +..||++||..+|.+.++-  +--++ +|  ...|=|=|+|+..++|.++|++|||..+. |+.   
T Consensus        84 ~~v~v~NL~~~V-~~~Dl~eLF~~~~~~~r~~--vhy~~-~G--~s~Gta~v~~~r~~DA~~avk~~~gv~ld-G~~---  153 (243)
T KOG0533|consen   84 TKVNVSNLPYGV-IDADLKELFAEFGELKRVA--VHYDR-AG--RSLGTADVSFNRRDDAERAVKKYNGVALD-GRP---  153 (243)
T ss_pred             ceeeeecCCcCc-chHHHHHHHHHhccceEEe--eccCC-CC--CCCccceeeecchHhHHHHHHHhcCcccC-Cce---
Confidence            889999999985 4889999999999877774  44454 44  66799999999999999999999995554 433   


Q ss_pred             eeeeeecCCCCCC
Q 013598          275 IRCEMVNSSSSNS  287 (439)
Q Consensus       275 ikcE~~~~~S~~~  287 (439)
                      ++++++...+-+.
T Consensus       154 mk~~~i~~~~~~~  166 (243)
T KOG0533|consen  154 MKIEIISSPSQSK  166 (243)
T ss_pred             eeeEEecCccccc
Confidence            8888887766553

>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]

Probab=97.83  E-value=2e-05  Score=78.09  Aligned_cols=126  Identities=21%  Similarity=0.296  Sum_probs=89.3

Q ss_pred             HHHHhhcCCCCccccccccchHHHHHHHHHHhhHHhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCC
Q 013598          126 MRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKK  205 (439)
Q Consensus       126 M~~wl~nKPrGFG~GK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk  205 (439)
                      |+.=...|+||||.+.|-+..--...|       ..+.-+||...-.|-.+.|+..++..   .+......++||-||..
T Consensus        39 m~d~~t~rsrgFgfv~f~~~~~v~~vl-------~~~~h~~dgr~ve~k~av~r~~~~~~---~~~~~tkkiFvGG~~~~  108 (311)
T KOG4205|consen   39 MRDPSTGRSRGFGFVTFATPEGVDAVL-------NARTHKLDGRSVEPKRAVSREDQTKV---GRHLRTKKIFVGGLPPD  108 (311)
T ss_pred             eccCCCCCcccccceecCCCcchheee-------cccccccCCccccceeccCccccccc---ccccceeEEEecCcCCC
Confidence            433334699999999999665555554       23556667666667777777532221   12226778999999998


Q ss_pred             CchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          206 KNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       206 ~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      +. ..+|++.|..+|-|..+-  ...+..|.  ..||||||+|.+++..+.+..+ ..+.|+
T Consensus       109 ~~-e~~~r~yfe~~g~v~~~~--~~~d~~~~--~~rgFgfv~~~~e~sVdkv~~~-~f~~~~  164 (311)
T KOG4205|consen  109 TT-EEDFKDYFEQFGKVADVV--IMYDKTTS--RPRGFGFVTFDSEDSVDKVTLQ-KFHDFN  164 (311)
T ss_pred             Cc-hHHHhhhhhccceeEeeE--Eeeccccc--ccccceeeEeccccccceeccc-ceeeec
Confidence            64 889999999999666664  44566665  7799999999999999988774 344444

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=1.7e-05  Score=77.47  Aligned_cols=69  Identities=22%  Similarity=0.336  Sum_probs=59.9

Q ss_pred             cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      -+||||-|-.+.+ ++=|-++|-.||.|.-|.++..-.  +.  +.||||||+|.-.|+|.++|.-+|+-++ ||
T Consensus        11 rtlYVGGladeVt-ekvLhaAFIPFGDI~dIqiPlDye--sq--kHRgFgFVefe~aEDAaaAiDNMnesEL-~G   79 (298)
T KOG0111|consen   11 RTLYVGGLADEVT-EKVLHAAFIPFGDIKDIQIPLDYE--SQ--KHRGFGFVEFEEAEDAAAAIDNMNESEL-FG   79 (298)
T ss_pred             eeEEeccchHHHH-HHHHHhccccccchhhcccccchh--cc--cccceeEEEeeccchhHHHhhcCchhhh-cc
Confidence            4899999999865 889999999999999998775532  43  7799999999999999999999999886 44

>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]

Probab=97.56  E-value=0.00012  Score=80.34  Aligned_cols=73  Identities=23%  Similarity=0.322  Sum_probs=62.9

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK  273 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK  273 (439)
                      +-|||||.||+... +.||..+|..||+|.+|.  .+.+        ||=|||++.++.+|.+++.+|+.+.|.    .|
T Consensus       421 SrTLwvG~i~k~v~-e~dL~~~feefGeiqSi~--li~~--------R~cAfI~M~~RqdA~kalqkl~n~kv~----~k  485 (894)
T KOG0132|consen  421 SRTLWVGGIPKNVT-EQDLANLFEEFGEIQSII--LIPP--------RGCAFIKMVRRQDAEKALQKLSNVKVA----DK  485 (894)
T ss_pred             eeeeeeccccchhh-HHHHHHHHHhcccceeEe--eccC--------CceeEEEEeehhHHHHHHHHHhccccc----ce
Confidence            56899999999743 889999999999999998  7776        788999999999999999999977766    66


Q ss_pred             eeeeeeec
Q 013598          274 QIRCEMVN  281 (439)
Q Consensus       274 ~ikcE~~~  281 (439)
                      .||+--+-
T Consensus       486 ~Iki~Wa~  493 (894)
T KOG0132|consen  486 TIKIAWAV  493 (894)
T ss_pred             eeEEeeec
Confidence            77766554

>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]

Probab=97.38  E-value=0.00014  Score=73.10  Aligned_cols=106  Identities=15%  Similarity=0.264  Sum_probs=79.2

Q ss_pred             CccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHHHHH
Q 013598          136 GFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDLKS  214 (439)
Q Consensus       136 GFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~kDL~~  214 (439)
                      -||.|--.|....+-+++-+-+=. .+-.||+..++++                  +-.+.++.|||+...+. .++|++
T Consensus        37 NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK------------------sk~stkl~vgNis~tct-n~ElRa   97 (346)
T KOG0109|consen   37 NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK------------------SKASTKLHVGNISPTCT-NQELRA   97 (346)
T ss_pred             ccceEEeecccccHHHHhhcccceecceEEEEEecccc------------------CCCccccccCCCCcccc-CHHHhh
Confidence            466666666666666665444422 4545555433332                  23456789999999986 899999


Q ss_pred             HhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc--ceee
Q 013598          215 AFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF--GKVQ  272 (439)
Q Consensus       215 aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f--gKVE  272 (439)
                      .|...|-||.-.            +-|++|||+|...++|-.+|..|||..|.+  ++|+
T Consensus        98 ~fe~ygpviecd------------ivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq  145 (346)
T KOG0109|consen   98 KFEKYGPVIECD------------IVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ  145 (346)
T ss_pred             hhcccCCceeee------------eecceeEEEEeeccchHHHHhcccccccccceeeee
Confidence            999999998875            458999999999999999999999999987  5554

>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]

Probab=97.36  E-value=0.00046  Score=69.40  Aligned_cols=72  Identities=19%  Similarity=0.168  Sum_probs=65.7

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ++=-||+|+-|+-.+. +-.|+..|..+|.|-+|+  .+.++-||  +.||+|||.|+++-+-..+-..-.|+.|.+
T Consensus        99 DPy~TLFv~RLnydT~-EskLrreF~~YG~Ikrir--lV~d~vTg--kskGYAFIeye~erdm~~AYK~adG~~Idg  170 (335)
T KOG0113|consen   99 DPYKTLFVARLNYDTS-ESKLRREFEKYGPIKRIR--LVRDKVTG--KSKGYAFIEYEHERDMKAAYKDADGIKIDG  170 (335)
T ss_pred             Cccceeeeeecccccc-HHHHHHHHHhcCcceeEE--EeeecccC--CccceEEEEeccHHHHHHHHHhccCceecC
Confidence            4567999999999865 779999999999999999  77888897  999999999999999999999999999886

>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]

Probab=97.34  E-value=0.0012  Score=64.79  Aligned_cols=93  Identities=16%  Similarity=0.269  Sum_probs=70.8

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ..--||+|.-||-+.. -|+|-.||.++.|--.--++-+..   +|..|+=||||||.+...|.+++..+||..|- .-+
T Consensus        32 ~~VRTLFVSGLP~DvK-pREiynLFR~f~GYEgslLK~Tsk---~~~~~~pvaFatF~s~q~A~aamnaLNGvrFD-pE~  106 (284)
T KOG1457|consen   32 GAVRTLFVSGLPNDVK-PREIYNLFRRFHGYEGSLLKYTSK---GDQVCKPVAFATFTSHQFALAAMNALNGVRFD-PET  106 (284)
T ss_pred             cccceeeeccCCcccC-HHHHHHHhccCCCccceeeeeccC---CCccccceEEEEecchHHHHHHHHHhcCeeec-ccc
Confidence            3456899999999843 899999999998754433332221   34689999999999999999999999998854 333


Q ss_pred             eceeeeeeecCCCCCCCC
Q 013598          272 QKQIRCEMVNSSSSNSVD  289 (439)
Q Consensus       272 EK~ikcE~~~~~S~~~~~  289 (439)
                      -.-+++|.+.++++..-.
T Consensus       107 ~stLhiElAKSNtK~kr~  124 (284)
T KOG1457|consen  107 GSTLHIELAKSNTKRKRR  124 (284)
T ss_pred             CceeEeeehhcCcccccC
Confidence            456788888887765543

>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]

Probab=97.30  E-value=0.00044  Score=71.24  Aligned_cols=85  Identities=20%  Similarity=0.260  Sum_probs=61.5

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      +.+.++-+|||+|||.+.+ ...|+++|+.+|.|....+.+..-    ..+...||||+|.+.+.+.++|+.-   ++.-
T Consensus       283 ~~~~~~~~i~V~nlP~da~-~~~l~~~Fk~FG~Ik~~~I~vr~~----~~~~~~fgFV~f~~~~~~~~~i~As---p~~i  354 (419)
T KOG0116|consen  283 EPRADGLGIFVKNLPPDAT-PAELEEVFKQFGPIKEGGIQVRSP----GGKNPCFGFVEFENAAAVQNAIEAS---PLEI  354 (419)
T ss_pred             ceeecccceEeecCCCCCC-HHHHHHHHhhcccccccceEEecc----CCCcCceEEEEEeecchhhhhhhcC---cccc
Confidence            4455777899999999865 667999999999998887766551    1122389999999999999999964   3333


Q ss_pred             ceeeceeeeeeecCC
Q 013598          269 GKVQKQIRCEMVNSS  283 (439)
Q Consensus       269 gKVEK~ikcE~~~~~  283 (439)
                      |  .+.+.+|--...
T Consensus       355 g--~~kl~Veek~~~  367 (419)
T KOG0116|consen  355 G--GRKLNVEEKRPG  367 (419)
T ss_pred             C--CeeEEEEecccc
Confidence            3  344444444443

>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]

Probab=97.27  E-value=0.00022  Score=68.11  Aligned_cols=71  Identities=27%  Similarity=0.361  Sum_probs=60.0

Q ss_pred             cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeece
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQ  274 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~  274 (439)
                      .+||||+||-..- ++||+.+|++.|.+-.+.            +--|||||.|.+.-+|+-+|--+||..|...+    
T Consensus         2 ~rv~vg~~~~~~~-~~d~E~~f~~yg~~~d~~------------mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~----   64 (216)
T KOG0106|consen    2 PRVYIGRLPYRAR-ERDVERFFKGYGKIPDAD------------MKNGFGFVEFEDPRDADDAVHDLDGKELCGER----   64 (216)
T ss_pred             CceeecccCCccc-hhHHHHHHhhccccccce------------eecccceeccCchhhhhcccchhcCceeccee----
Confidence            5899999999743 889999999999988774            33599999999999999999999999988765    


Q ss_pred             eeeeeecC
Q 013598          275 IRCEMVNS  282 (439)
Q Consensus       275 ikcE~~~~  282 (439)
                      +-.|.+..
T Consensus        65 ~vve~~r~   72 (216)
T KOG0106|consen   65 LVVEHARG   72 (216)
T ss_pred             eeeecccc
Confidence            55555553

>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]

Probab=97.16  E-value=0.00021  Score=69.71  Aligned_cols=79  Identities=18%  Similarity=0.141  Sum_probs=64.6

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      .--+|||+||..+.. +.-|.++|-..|-|+++.++...+     ...| ||||.|+++-...-+|+.+||-.+-.--++
T Consensus         8 ~drtl~v~n~~~~v~-eelL~ElfiqaGPV~kv~ip~~~d-----~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q   80 (267)
T KOG4454|consen    8 MDRTLLVQNMYSGVS-EELLSELFIQAGPVYKVGIPSGQD-----QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ   80 (267)
T ss_pred             hhhHHHHHhhhhhhh-HHHHHHHhhccCceEEEeCCCCcc-----CCCc-eeeeecccccchhhhhhhcccchhccchhh
Confidence            456899999999843 567999999999999998776666     3557 999999999999999999999987755555


Q ss_pred             ceeeee
Q 013598          273 KQIRCE  278 (439)
Q Consensus       273 K~ikcE  278 (439)
                      ..++|-
T Consensus        81 ~~~r~G   86 (267)
T KOG4454|consen   81 RTLRCG   86 (267)
T ss_pred             cccccC
Confidence            566663

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=96.86  E-value=0.0055  Score=52.10  Aligned_cols=70  Identities=24%  Similarity=0.245  Sum_probs=51.9

Q ss_pred             cEEEEcCCCCCCchHHHHHHHhcc-C-CCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKG-V-PGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~-v-GgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      .||=|.|+|.+.+ .++|.+++.. + |.--=++++.+  -+|+  ...|+|||+|.+.+.|.+|.+.++|+.....
T Consensus         2 TTvMirNIPn~~t-~~~L~~~l~~~~~g~yDF~YLPiD--f~~~--~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~   73 (97)
T PF04059_consen    2 TTVMIRNIPNKYT-QEMLIQILDEHFKGKYDFFYLPID--FKNK--CNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF   73 (97)
T ss_pred             eeEEEecCCCCCC-HHHHHHHHHHhccCcceEEEeeee--ccCC--CceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence            4788999999865 6677777632 2 33333454443  3354  6699999999999999999999999998653

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=96.74  E-value=0.0034  Score=52.44  Aligned_cols=131  Identities=18%  Similarity=0.170  Sum_probs=92.7

Q ss_pred             hcCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc--cCCCCCCC---CC---CCCCCCCCCCCCCccEEEEcC
Q 013598          131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE--NELLKPSP---KK---DEPKKKEPEDMPSGIRVRLLN  201 (439)
Q Consensus       131 ~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~--~~P~~~n~---~k---~~~akk~~e~~~dgvRVrVGN  201 (439)
                      ..++||||++.|.+...+..++++|.+.. .++.+-++...  ..+....+   ..   .............+..++++|
T Consensus       153 ~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (306)
T COG0724         153 TGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGN  232 (306)
T ss_pred             cCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccc
Confidence            34999999999999999999999999766 88888888754  22222221   00   011112455667899999999


Q ss_pred             CCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          202 LPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       202 LPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      +|.... ..++..+|...|.+.++.......   + ..|.++.++.+.....+...+...+....
T Consensus       233 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (306)
T COG0724         233 LPLKTA-EEELADLFKSRGDIVRASLPPSKD---G-KIPKSRSFVGNEASKDALESNSRGNKKKI  292 (306)
T ss_pred             cccccc-hhHHHHhccccccceeeeccCCCC---C-cccccccccchhHHHhhhhhhccccceee
Confidence            999854 889999999999997765333322   2 46788888777777777777666554443

>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]

Probab=96.66  E-value=0.003  Score=65.65  Aligned_cols=135  Identities=12%  Similarity=0.117  Sum_probs=97.3

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCC-CCC---CCCCccEEEEcCCCCCCc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKK-EPE---DMPSGIRVRLLNLPKKKN  207 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk-~~e---~~~dgvRVrVGNLPkk~n  207 (439)
                      |.+||-.+...-...+--+||-|.+.- -||-+-++    +|- +-|++    +. -+.   ..-.=.|+||...-.+..
T Consensus       153 kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg----rPs-NmpQA----QpiID~vqeeAk~fnRiYVaSvHpDLS  223 (544)
T KOG0124|consen  153 KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG----RPS-NMPQA----QPIIDMVQEEAKKFNRIYVASVHPDLS  223 (544)
T ss_pred             cccceEEEEEeCcHHHHHHHHHhccccccCcccccc----CCC-CCccc----chHHHHHHHHHHhhheEEeeecCCCcc
Confidence            899999999999999999999998744 33333333    222 12221    11 011   111236999999988743


Q ss_pred             hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc--ceeeceeeeeeec
Q 013598          208 IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF--GKVQKQIRCEMVN  281 (439)
Q Consensus       208 i~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f--gKVEK~ikcE~~~  281 (439)
                       +.|++.+|..||.|+.-.+|....  +|  ..|||||+.|++...-..+|..+|=+.+.+  +||-|.+.--.+.
T Consensus       224 -e~DiKSVFEAFG~I~~C~LAr~pt--~~--~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aL  294 (544)
T KOG0124|consen  224 -ETDIKSVFEAFGEIVKCQLARAPT--GR--GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDAL  294 (544)
T ss_pred             -HHHHHHHHHhhcceeeEEeeccCC--CC--CccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchh
Confidence             779999999999999999775433  33  679999999999999999999999888777  7777766544443

>KOG0226 consensus RNA-binding proteins [General function prediction only]

Probab=96.62  E-value=0.0026  Score=63.13  Aligned_cols=71  Identities=24%  Similarity=0.334  Sum_probs=64.0

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      .+-.|||-|.|--+.| +.=|.-+|+.|+.-..-+  ++.++-||  +.|||+||.|.+..++.+++..+||..++
T Consensus       188 ~~DfRIfcgdlgNevn-d~vl~raf~Kfpsf~~ak--viRdkRTg--KSkgygfVSf~~pad~~rAmrem~gkyVg  258 (290)
T KOG0226|consen  188 EDDFRIFCGDLGNEVN-DDVLARAFKKFPSFQKAK--VIRDKRTG--KSKGYGFVSFRDPADYVRAMREMNGKYVG  258 (290)
T ss_pred             cccceeeccccccccc-HHHHHHHHHhccchhhcc--cccccccc--ccccceeeeecCHHHHHHHHHhhcccccc
Confidence            3678999999998876 556999999999987776  88898897  99999999999999999999999999987

>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]

Probab=96.57  E-value=0.0046  Score=65.31  Aligned_cols=66  Identities=17%  Similarity=0.256  Sum_probs=54.1

Q ss_pred             EEEcCCCCCCchHHHHHHHhcc-CCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          197 VRLLNLPKKKNIHRDLKSAFKG-VPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       197 VrVGNLPkk~ni~kDL~~aFk~-vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      |||+|+|.+.. -+||+.||++ +|+|.-+.  ..-|. .  ++.||-|.|.|+++|.+.+++|++|-+++++
T Consensus        47 vfItNIpyd~r-WqdLKdLvrekvGev~yve--Ll~D~-~--GK~rGcavVEFk~~E~~qKa~E~lnk~~~~G  113 (608)
T KOG4212|consen   47 VFITNIPYDYR-WQDLKDLVREKVGEVEYVE--LLFDE-S--GKARGCAVVEFKDPENVQKALEKLNKYEVNG  113 (608)
T ss_pred             EEEecCcchhh-hHhHHHHHHHhcCceEeee--eeccc-C--CCcCCceEEEeeCHHHHHHHHHHhhhccccC
Confidence            99999999843 7899999955 66666665  33333 3  3789999999999999999999999999886

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=96.52  E-value=0.0047  Score=66.99  Aligned_cols=72  Identities=19%  Similarity=0.317  Sum_probs=60.7

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      +.-|--|||.-|+-.+. ..||+.||..+|-||-.+  |+.|  |+-|-.|-+||||+.+-++|.++|+-|.-.++-
T Consensus       402 s~~gRNlWVSGLSstTR-AtDLKnlFSKyGKVvGAK--VVTN--aRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH  473 (940)
T KOG4661|consen  402 STLGRNLWVSGLSSTTR-ATDLKNLFSKYGKVVGAK--VVTN--ARSPGARCYGFVTMSTSAEATKCIEHLHRTELH  473 (940)
T ss_pred             cccccceeeeccccchh-hhHHHHHHHHhcceecee--eeec--CCCCCcceeEEEEecchHHHHHHHHHhhhhhhc
Confidence            34567799999998642 559999999999999998  8888  666899999999999999999999987655543

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.0096  Score=61.73  Aligned_cols=78  Identities=19%  Similarity=0.295  Sum_probs=68.1

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .+.|+..-|+|--|-.-+. +.||+-+|..||-|++-.  ++.++||||-.|  +|||-|++.+...++.=++...-|-.
T Consensus       234 d~~PPeNVLFVCKLNPVTt-DeDLeiIFSrFG~i~sce--VIRD~ktgdsLq--yaFiEFen~escE~AyFKMdNvLIDD  308 (479)
T KOG0415|consen  234 DVKPPENVLFVCKLNPVTT-DEDLEIIFSRFGKIVSCE--VIRDRKTGDSLQ--YAFIEFENKESCEQAYFKMDNVLIDD  308 (479)
T ss_pred             ccCCCcceEEEEecCCccc-ccchhhHHhhcccceeee--EEecccccchhh--eeeeeecchhhHHHHHhhhcceeecc
Confidence            6667888899999988653 889999999999999998  999999998777  79999999999999998988888776


Q ss_pred             cee
Q 013598          269 GKV  271 (439)
Q Consensus       269 gKV  271 (439)
                      -||
T Consensus       309 rRI  311 (479)
T KOG0415|consen  309 RRI  311 (479)
T ss_pred             ceE
Confidence            544

>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]

Probab=95.95  E-value=0.038  Score=56.87  Aligned_cols=162  Identities=13%  Similarity=0.114  Sum_probs=96.6

Q ss_pred             ccccccccchHHHHHHhhcCCCCccccccccchHHHHHHHHHHhhHHhhhhhccccccCCCCCCCCCC--CCCCC-CCCC
Q 013598          114 DEDEGMMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKD--EPKKK-EPED  190 (439)
Q Consensus       114 ~~dE~~~~~~~~M~~wl~nKPrGFG~GK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~~~n~~k~--~~akk-~~e~  190 (439)
                      |++.-...|...| .|+.+.-.-||.-  -||+...+-+.|-.-.++...-.+.+   +|+..-+...  ...++ +..-
T Consensus        54 d~~k~~W~pki~~-df~a~yq~nyg~~--~d~s~~~~e~~e~~~a~~~~e~e~~k---~~~r~~~~~~~~kk~~~e~~~~  127 (382)
T KOG1548|consen   54 DDEKKAWVPKIPE-DFIAEYQANYGFE--DDTSADATELEEDGHAKKKKEDELLK---NPKRKYKVGKGEKKQKEEGEWF  127 (382)
T ss_pred             ehhhccccCCCch-hHHHhhhcccCcc--ccccccchhhhhhhhhhhcccchhhh---cccccccCccccccccCCCccc
Confidence            4445556665444 5667766677776  56666555555544444333323332   4443222211  11111 2122


Q ss_pred             C--C-CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEe----eccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC
Q 013598          191 M--P-SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINII----PVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR  263 (439)
Q Consensus       191 ~--~-dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIk----pAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NG  263 (439)
                      .  + -...|||.|||-+.+ ..+..++|..+|.|++--    |. ++-=.+.++.-||=|..+|-.++..+-+|+.|+|
T Consensus       128 ~~~~~~Nt~VYVsgLP~DiT-~dE~~~~~sKcGiI~~d~~t~epk-~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe  205 (382)
T KOG1548|consen  128 NPEPKVNTSVYVSGLPLDIT-VDEFAEVMSKCGIIMRDPQTGEPK-VKLYRDNQGKLKGDALCCYIKRESVELAIKILDE  205 (382)
T ss_pred             CcccccCceEEecCCCCccc-HHHHHHHHHhcceEeccCCCCCee-EEEEecCCCCccCceEEEeecccHHHHHHHHhCc
Confidence            2  3 234599999999854 778999999999987641    11 1111122245579999999999999999999999


Q ss_pred             ceeccceeeceeeeeeecCCCCCC
Q 013598          264 QIIAFGKVQKQIRCEMVNSSSSNS  287 (439)
Q Consensus       264 q~~~fgKVEK~ikcE~~~~~S~~~  287 (439)
                      -.|.+    +.+++|.|+.+-...
T Consensus       206 ~~~rg----~~~rVerAkfq~Kge  225 (382)
T KOG1548|consen  206 DELRG----KKLRVERAKFQMKGE  225 (382)
T ss_pred             ccccC----cEEEEehhhhhhccC
Confidence            99885    455666676665544

>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]

Probab=95.73  E-value=0.017  Score=63.74  Aligned_cols=73  Identities=18%  Similarity=0.238  Sum_probs=58.5

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeec--cccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPV--VSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpA--v~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      |-..-||||||+.+.+ ++.|-.-|..||-|++|++-  .+---+-++-.|   |||.|-++.+|.||...++|+.|+.
T Consensus       172 P~TTNlyv~Nlnpsv~-E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~c---gfvafmnR~D~era~k~lqg~iv~~  246 (877)
T KOG0151|consen  172 PQTTNLYVGNLNPSVD-ENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNC---GFVAFMNRADAERALKELQGIIVME  246 (877)
T ss_pred             CcccceeeecCCcccc-HHHHHHHhcccCcccceeeecccchhhhcccccc---ceeeehhhhhHHHHHHHhcceeeee
Confidence            3456799999999964 89999999999999999865  222222333456   7899999999999999999999884

>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]

Probab=95.61  E-value=0.02  Score=54.73  Aligned_cols=87  Identities=16%  Similarity=0.174  Sum_probs=67.9

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ...+.-.+||||+-..+.+.+ ++.-|..+|++.+|.+....+.  |  ..||||||-|.+.+.+...+. +||-.|-.-
T Consensus        97 ~~~d~~sv~v~nvd~~~t~~~-~e~hf~~Cg~i~~~ti~~d~~~--~--~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~  170 (231)
T KOG4209|consen   97 KEVDAPSVWVGNVDFLVTLTK-IELHFESCGGINRVTVPKDKFR--G--HPKGFAYVEFSSYELVEEAYK-LDGSEIPGP  170 (231)
T ss_pred             hccCCceEEEeccccccccch-hhheeeccCCccceeeeccccC--C--CcceeEEEecccHhhhHHHhh-cCCcccccc
Confidence            334667899999999876555 9999999999998886666664  3  369999999999999999999 999998875


Q ss_pred             eeeceeeeeeecC
Q 013598          270 KVQKQIRCEMVNS  282 (439)
Q Consensus       270 KVEK~ikcE~~~~  282 (439)
                      .|++..+---+-.
T Consensus       171 ~i~vt~~r~~~pg  183 (231)
T KOG4209|consen  171 AIEVTLKRTNVPG  183 (231)
T ss_pred             cceeeeeeeecCC
Confidence            5555554444333

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=95.38  E-value=0.055  Score=46.49  Aligned_cols=65  Identities=18%  Similarity=0.333  Sum_probs=44.6

Q ss_pred             EEEEcCCCCCCch---HHHHHHHhccCCC-eeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          196 RVRLLNLPKKKNI---HRDLKSAFKGVPG-IINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       196 RVrVGNLPkk~ni---~kDL~~aFk~vGg-visIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      .|+|.|||-.+..   ..=|+.|+-..|| |++|         +     .|=|+|-|.+.+.|.|+-..++|..+-+-||
T Consensus         4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI   69 (90)
T PF11608_consen    4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------S-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKI   69 (90)
T ss_dssp             EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------e-----CCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence            5899999997665   4479999999988 3333         2     4679999999999999999999999877666


Q ss_pred             ece
Q 013598          272 QKQ  274 (439)
Q Consensus       272 EK~  274 (439)
                      --+
T Consensus        70 ~v~   72 (90)
T PF11608_consen   70 SVS   72 (90)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]

Probab=95.28  E-value=0.023  Score=58.13  Aligned_cols=75  Identities=17%  Similarity=0.085  Sum_probs=63.8

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEe------eccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCc
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINII------PVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQ  264 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIk------pAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq  264 (439)
                      ...-.+|||++||-.+. ..+|.+.|..+|-|-+=+      ++.-++++|+  ..||=|-|++.+-..|.++|+-|+|+
T Consensus        63 ~s~~~ti~v~g~~d~~~-~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~--~~KGeatvS~~D~~~akaai~~~agk  139 (351)
T KOG1995|consen   63 KSDNETIFVWGCPDSVC-ENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETG--APKGEATVSYEDPPAAKAAIEWFAGK  139 (351)
T ss_pred             ccccccceeeccCccch-HHHHHHHHhhcceeccCCCCCCcchhcccccccc--CcCCceeeeecChhhhhhhhhhhccc
Confidence            45678999999999865 789999999998764422      2255888997  89999999999999999999999999


Q ss_pred             eecc
Q 013598          265 IIAF  268 (439)
Q Consensus       265 ~~~f  268 (439)
                      .|..
T Consensus       140 df~g  143 (351)
T KOG1995|consen  140 DFCG  143 (351)
T ss_pred             cccC
Confidence            9886

>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=95.26  E-value=0.035  Score=57.12  Aligned_cols=62  Identities=19%  Similarity=0.265  Sum_probs=50.2

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      --+||||+|=-. +.++||+.-|-.+|++-+|.  ....        +|=|||+|.+++.|..+.++.-...+
T Consensus       228 I~tLyIg~l~d~-v~e~dIrdhFyqyGeirsi~--~~~~--------~~CAFv~ftTR~aAE~Aae~~~n~lv  289 (377)
T KOG0153|consen  228 IKTLYIGGLNDE-VLEQDIRDHFYQYGEIRSIR--ILPR--------KGCAFVTFTTREAAEKAAEKSFNKLV  289 (377)
T ss_pred             eeEEEecccccc-hhHHHHHHHHhhcCCeeeEE--eecc--------cccceeeehhhHHHHHHHHhhcceee
Confidence            358999999544 45999999999999999996  3333        67899999999999999998544443

>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]

Probab=94.72  E-value=0.061  Score=54.48  Aligned_cols=70  Identities=21%  Similarity=0.215  Sum_probs=58.0

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      +--.|+||-|.+.-. +.|++.+|..+|.+....  +..-   -|+..||-|||.|.+--+|..+|..+.|-.-+-
T Consensus        18 ~drklfvgml~kqq~-e~dvrrlf~pfG~~~e~t--vlrg---~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmp   87 (371)
T KOG0146|consen   18 DDRKLFVGMLNKQQS-EDDVRRLFQPFGNIEECT--VLRG---PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMP   87 (371)
T ss_pred             cchhhhhhhhccccc-HHHHHHHhcccCCcceeE--EecC---CCCCCCCceEEEeccchHHHHHHHHhcccccCC
Confidence            445799999999743 889999999999998886  4333   256889999999999999999999999876443

>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]

Probab=94.32  E-value=0.041  Score=55.06  Aligned_cols=65  Identities=15%  Similarity=0.260  Sum_probs=55.1

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhC
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFS  262 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~N  262 (439)
                      +.-.|+||.|+-+++ ...|+.-|..+|+|+-..  +-.++-|+  -.|||+||+|++.+--++++-.-.
T Consensus         5 ~~~KlfiGgisw~tt-ee~Lr~yf~~~Gev~d~~--vm~d~~t~--rsrgFgfv~f~~~~~v~~vl~~~~   69 (311)
T KOG4205|consen    5 ESGKLFIGGLSWETT-EESLREYFSQFGEVTDCV--VMRDPSTG--RSRGFGFVTFATPEGVDAVLNART   69 (311)
T ss_pred             CCcceeecCcCcccc-HHHHHHHhcccCceeeEE--EeccCCCC--CcccccceecCCCcchheeecccc
Confidence            667899999999975 888999999999999987  55666674  789999999999988888876533

>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]

Probab=94.21  E-value=0.051  Score=53.83  Aligned_cols=67  Identities=19%  Similarity=0.250  Sum_probs=55.5

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .-.+|+|.||..+++ +.+|+.+|+.++|-.+.+   +.+| .|  +|  -|||.|+..+.|+.++--+.|.-|.-
T Consensus       209 acstlfianl~~~~~-ed~l~~~~~~~~gf~~l~---~~~~-~g--~~--vaf~~~~~~~~at~am~~lqg~~~s~  275 (284)
T KOG1457|consen  209 ACSTLFIANLGPNCT-EDELKQLLSRYPGFHILK---IRAR-GG--MP--VAFADFEEIEQATDAMNHLQGNLLSS  275 (284)
T ss_pred             hhhhHhhhccCCCCC-HHHHHHHHHhCCCceEEE---EecC-CC--cc--eEeecHHHHHHHHHHHHHhhcceecc
Confidence            446899999999987 889999999999977765   3332 33  66  58899999999999999999988764

>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]

Probab=94.16  E-value=0.029  Score=55.83  Aligned_cols=71  Identities=20%  Similarity=0.213  Sum_probs=55.9

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCC--CCCCCcccce--------EEEeecCHHHHHHHHHHhCCce
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNK--KTKDPICKGF--------AFVDFESEDYATRFVQLFSRQI  265 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nr--KTgDp~CKGF--------AFVTf~seEdA~rfIEk~NGq~  265 (439)
                      -||++|.|..++ .-=|+++|..+|.|-||+++...+-  +-+  +.+|+        |.|-|.+--.|.++.+.|||..
T Consensus        76 VvylS~IPp~m~-~~rlReil~~yGeVGRvylqpE~~s~~~~r--~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~  152 (278)
T KOG3152|consen   76 VVYLSNIPPYMD-PVRLREILSQYGEVGRVYLQPEDDSKRAAR--KRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP  152 (278)
T ss_pred             EEEeccCCCccC-HHHHHHHHHhccccceEEecchhhHHHHHH--hhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence            499999999976 7779999999999999998843321  000  11222        5789999999999999999999


Q ss_pred             eccc
Q 013598          266 IAFG  269 (439)
Q Consensus       266 ~~fg  269 (439)
                      |.+.
T Consensus       153 Iggk  156 (278)
T KOG3152|consen  153 IGGK  156 (278)
T ss_pred             cCCC
Confidence            9865

>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]

Probab=94.15  E-value=0.085  Score=56.16  Aligned_cols=68  Identities=21%  Similarity=0.208  Sum_probs=56.1

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ..-..++.|.|||.+++ -|-|+.-|.++|.|....+  -.+     ++.||  .|.|.+.++|.+++..+||-.+.+
T Consensus       533 arKa~qIiirNlP~dfT-WqmlrDKfre~G~v~yadi--me~-----GkskG--VVrF~s~edAEra~a~Mngs~l~G  600 (608)
T KOG4212|consen  533 ARKACQIIIRNLPFDFT-WQMLRDKFREIGHVLYADI--MEN-----GKSKG--VVRFFSPEDAERACALMNGSRLDG  600 (608)
T ss_pred             cccccEEEEecCCcccc-HHHHHHHHHhccceehhhh--hcc-----CCccc--eEEecCHHHHHHHHHHhccCcccC
Confidence            34456899999999875 8899999999999887753  223     25577  999999999999999999988765

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=94.13  E-value=0.13  Score=43.72  Aligned_cols=60  Identities=17%  Similarity=0.284  Sum_probs=37.8

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCc
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQ  264 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq  264 (439)
                      |.-|+|.+++..+. +.+|+++|+.+|.|.-|-  -..    |    ---|||-|++.+.|.++++++.-.
T Consensus         1 G~il~~~g~~~~~~-re~iK~~f~~~g~V~yVD--~~~----G----~~~g~VRf~~~~~A~~a~~~~~~~   60 (105)
T PF08777_consen    1 GCILKFSGLGEPTS-REDIKEAFSQFGEVAYVD--FSR----G----DTEGYVRFKTPEAAQKALEKLKEA   60 (105)
T ss_dssp             --EEEEEE--SS---HHHHHHHT-SS--EEEEE----T----T-----SEEEEEESS---HHHHHHHHHHT
T ss_pred             CeEEEEecCCCCcC-HHHHHHHHHhcCCcceEE--ecC----C----CCEEEEEECCcchHHHHHHHHHhc
Confidence            56789999999876 889999999999877664  111    1    336899999999999999998655

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]

Probab=94.06  E-value=0.15  Score=49.66  Aligned_cols=70  Identities=26%  Similarity=0.360  Sum_probs=56.8

Q ss_pred             CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       188 ~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      ....++.+.+.+.|||.+.+ ..-|..+|..++|.-.|+  -+..+       +|.|||.|.++-.|..+-+.+.|..|+
T Consensus       140 ~~~~ppn~ilf~~niP~es~-~e~l~~lf~qf~g~keir--~i~~~-------~~iAfve~~~d~~a~~a~~~lq~~~it  209 (221)
T KOG4206|consen  140 AQMAPPNNILFLTNIPSESE-SEMLSDLFEQFPGFKEIR--LIPPR-------SGIAFVEFLSDRQASAAQQALQGFKIT  209 (221)
T ss_pred             ccCCCCceEEEEecCCcchh-HHHHHHHHhhCcccceeE--eccCC-------CceeEEecchhhhhHHHhhhhccceec
Confidence            34467889999999999976 556777777777766665  33342       899999999999999999999999887

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=93.96  E-value=0.058  Score=58.55  Aligned_cols=66  Identities=20%  Similarity=0.280  Sum_probs=51.8

Q ss_pred             EEEcCCCCCCc-----hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          197 VRLLNLPKKKN-----IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       197 VrVGNLPkk~n-----i~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      |.|-|.|.---     +..-|..+|..+|.+++++.+....  +   .|+||.|+.+++..+|..+|..+||+.+-
T Consensus        61 Vvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~--g---gtkG~lf~E~~~~~~A~~aVK~l~G~~ld  131 (698)
T KOG2314|consen   61 VVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE--G---GTKGYLFVEYASMRDAKKAVKSLNGKRLD  131 (698)
T ss_pred             EEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc--C---CeeeEEEEEecChhhHHHHHHhcccceec
Confidence            55566665211     2345788999999999998775544  3   48999999999999999999999999864

>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]

Probab=93.48  E-value=0.094  Score=55.77  Aligned_cols=81  Identities=15%  Similarity=0.145  Sum_probs=66.3

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .+......++|+|||--.+ .-.+.++...||.+-.+.  .++|.-||  -.|||||..|-+-..++++|+.+||..+..
T Consensus       284 ~~~~~~~ki~v~~lp~~l~-~~q~~Ell~~fg~lk~f~--lv~d~~~g--~skg~af~ey~dpsvtd~A~agLnGm~lgd  358 (500)
T KOG0120|consen  284 DVPDSPNKIFVGGLPLYLT-EDQVKELLDSFGPLKAFR--LVKDSATG--NSKGFAFCEYCDPSVTDQAIAGLNGMQLGD  358 (500)
T ss_pred             CcccccchhhhccCcCccC-HHHHHHHHHhcccchhhe--eecccccc--cccceeeeeeeCCcchhhhhcccchhhhcC
Confidence            3445678899999999643 667889999999988887  66776675  889999999999999999999999999876


Q ss_pred             ceeece
Q 013598          269 GKVQKQ  274 (439)
Q Consensus       269 gKVEK~  274 (439)
                      -++=.+
T Consensus       359 ~~lvvq  364 (500)
T KOG0120|consen  359 KKLVVQ  364 (500)
T ss_pred             ceeEee
Confidence            444333

>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]

Probab=93.21  E-value=0.06  Score=51.83  Aligned_cols=65  Identities=22%  Similarity=0.377  Sum_probs=54.7

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .-...++.|.||+-..+ .+||..-|...|.+...    +..        ++||||-|.+.++|.++|++++|..+..
T Consensus        96 ~~s~~r~~~~~~~~r~~-~qdl~d~~~~~g~~~~~----~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~  160 (216)
T KOG0106|consen   96 SRTHFRLIVRNLSLRVS-WQDLKDHFRPAGEVTYV----DAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNG  160 (216)
T ss_pred             ccccceeeeccchhhhh-HHHHhhhhcccCCCchh----hhh--------ccccceeehhhhhhhhcchhccchhhcC
Confidence            34567899999999743 78999999999998332    222        8999999999999999999999999886

>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons

Probab=93.05  E-value=0.19  Score=46.08  Aligned_cols=89  Identities=17%  Similarity=0.231  Sum_probs=53.9

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhcc-CCCee--EEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKG-VPGII--NIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~-vGgvi--sIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ..+..|-|.+||...+ +.++.+.+.. +|+.+  ..+.-.......+ +..-.=|||+|.+.+++..|+..|+|+.|..
T Consensus         5 ~~~~KvVIR~LPP~Lt-eeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~-~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D   82 (176)
T PF03467_consen    5 KEGTKVVIRRLPPNLT-EEEFWEQISPWLPDEWDWYYFQGKYGKKSFK-PPTYSRAYINFKNPEDLLEFRDRFDGHVFVD   82 (176)
T ss_dssp             ----EEEEEEE-TTS--HHHHCCCCSS--SSE---EEEEEEES-SSST-TS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred             ccCceEEEeCCCCCCC-HHHHHHHhhhhcccccceEEEecCCCCccCC-CCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence            3567999999999754 7788888877 77772  2222223343344 3335679999999999999999999999887


Q ss_pred             ce-eeceeeeeeecC
Q 013598          269 GK-VQKQIRCEMVNS  282 (439)
Q Consensus       269 gK-VEK~ikcE~~~~  282 (439)
                      -+ .+-...+|.+-.
T Consensus        83 ~kg~~~~~~VE~Apy   97 (176)
T PF03467_consen   83 SKGNEYPAVVEFAPY   97 (176)
T ss_dssp             TTS-EEEEEEEE-SS
T ss_pred             CCCCCcceeEEEcch
Confidence            22 234444555444

Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.

>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=92.83  E-value=0.095  Score=56.29  Aligned_cols=66  Identities=27%  Similarity=0.372  Sum_probs=56.0

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ..-+|.|.|||.... ..+|..+|..+|+|--|       +.|  +.-+|=-||.|=+.-+|.+++..+|++.|.+
T Consensus        74 ~~~~L~v~nl~~~Vs-n~~L~~~f~~yGeir~i-------r~t--~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~  139 (549)
T KOG4660|consen   74 NQGTLVVFNLPRSVS-NDTLLRIFGAYGEIREI-------RET--PNKRGIVFVEFYDVRDAERALKALNRREIAG  139 (549)
T ss_pred             ccceEEEEecCCcCC-HHHHHHHHHhhcchhhh-------hcc--cccCceEEEEEeehHhHHHHHHHHHHHHhhh
Confidence            445899999999743 77999999999996554       344  3668999999999999999999999999885

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=91.31  E-value=0.22  Score=55.95  Aligned_cols=99  Identities=19%  Similarity=0.120  Sum_probs=78.4

Q ss_pred             hcCCCCccccccccchHHHHHHHHHHhhHHhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 013598          131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR  210 (439)
Q Consensus       131 ~nKPrGFG~GK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~k  210 (439)
                      +.+.||.+|+.|....-+.++++ |.-+-..                       .        -+-|.|.|+|+..+ ..
T Consensus       705 ~~~~rG~~Y~~F~~~~~~~aaV~-f~d~~~~-----------------------g--------K~~v~i~g~pf~gt-~e  751 (881)
T KOG0128|consen  705 EKRFRGKAYVEFLKPEHAGAAVA-FRDSCFF-----------------------G--------KISVAISGPPFQGT-KE  751 (881)
T ss_pred             ccccccceeeEeecCCchhhhhh-hhhhhhh-----------------------h--------hhhhheeCCCCCCc-hH
Confidence            45999999999999888877762 2222211                       0        24578999999875 77


Q ss_pred             HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       211 DL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      +|+.++.+.|.+.+.+  .+.+|   +++.||-|||.|+++.+|-+.+-...+..++
T Consensus       752 ~~k~l~~~~gn~~~~~--~vt~r---~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r  803 (881)
T KOG0128|consen  752 ELKSLASKTGNVTSLR--LVTVR---AGKPKGKARVDYNTEADASRKVASVDVAGKR  803 (881)
T ss_pred             HHHhhccccCCccccc--hhhhh---ccccccceeccCCCcchhhhhcccchhhhhh
Confidence            8999999999999998  55553   3488999999999999999999988888776

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]

Probab=88.81  E-value=0.39  Score=50.30  Aligned_cols=70  Identities=16%  Similarity=0.173  Sum_probs=53.0

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCC--CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVP--GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vG--gvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      -+.||||||=--++ +.||-.++...|  .+.-|+  --.||-.|  ..||||.|.+.++...++.+|.|--++|-+
T Consensus        80 k~~~YvGNL~W~TT-D~DL~~A~~S~G~~~~~dmK--FFENR~NG--QSKG~AL~~~~SdAa~Kq~MeiLP~k~iHG  151 (498)
T KOG4849|consen   80 KYCCYVGNLLWYTT-DADLLKALQSTGLAQFADMK--FFENRTNG--QSKGYALLVLNSDAAVKQTMEILPTKTIHG  151 (498)
T ss_pred             eEEEEecceeEEec-cHHHHHHHHhhhHHHHhhhh--hhhcccCC--cccceEEEEecchHHHHHHHHhcccceecC
Confidence            36799999988754 889888875544  333333  34677554  999999999999999999999977666553

>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins []

Probab=88.60  E-value=0.86  Score=35.97  Aligned_cols=67  Identities=24%  Similarity=0.276  Sum_probs=37.7

Q ss_pred             CCCCCCch-HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeee
Q 013598          201 NLPKKKNI-HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEM  279 (439)
Q Consensus       201 NLPkk~ni-~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~  279 (439)
                      |+=++-.+ .++|-.++.+.+++-+-.+-.+.-.       .-|+||.+... .|.++++.++|..+.+    +.+++|.
T Consensus         6 n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-------~~~S~vev~~~-~a~~v~~~l~~~~~~g----k~v~ve~   73 (74)
T PF03880_consen    6 NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-------DNFSFVEVPEE-VAEKVLEALNGKKIKG----KKVRVER   73 (74)
T ss_dssp             S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE--------SS-EEEEE-TT--HHHHHHHHTT--SSS--------EEE
T ss_pred             EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-------eeEEEEEECHH-HHHHHHHHhcCCCCCC----eeEEEEE
Confidence            34444345 6699999988887655432222222       55999999876 8999999999999884    4455544

; PDB: 2G0C_A 3MOJ_B.

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=88.58  E-value=0.17  Score=44.53  Aligned_cols=45  Identities=18%  Similarity=0.337  Sum_probs=38.4

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKP  176 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~  176 (439)
                      .++||||++.|.+.+.++++|++|.+.. .++.+-++....+|..+
T Consensus        73 g~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~~~  118 (144)
T PLN03134         73 GRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAP  118 (144)
T ss_pred             CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCCCC
Confidence            3799999999999999999999998877 78888888877766543

>smart00361 RRM_1 RNA recognition motif

Probab=88.22  E-value=0.15  Score=39.09  Aligned_cols=32  Identities=9%  Similarity=0.069  Sum_probs=27.7

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhh
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQM  163 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~ara  163 (439)
                      +++||||++.+.+.+.+.+++++|.+.. .+|.
T Consensus        34 ~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~   66 (70)
T smart00361       34 NHKRGNVYITFERSEDAARAIVDLNGRYFDGRT   66 (70)
T ss_pred             CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            5789999999999999999999998866 4443

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=86.95  E-value=1.8  Score=32.83  Aligned_cols=51  Identities=14%  Similarity=0.335  Sum_probs=37.8

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHH
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFV  258 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfI  258 (439)
                      .|-|.--|.+  ...++..-|..+|+|+.+.....          +=++||.|+++.+|.+++
T Consensus         3 wI~V~Gf~~~--~~~~vl~~F~~fGeI~~~~~~~~----------~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen    3 WISVSGFPPD--LAEEVLEHFASFGEIVDIYVPES----------TNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             EEEEEeECch--HHHHHHHHHHhcCCEEEEEcCCC----------CcEEEEEECCHHHHHhhC
Confidence            3455556665  25567778999999999984411          348999999999999874

>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]

Probab=86.62  E-value=4.8  Score=43.44  Aligned_cols=114  Identities=20%  Similarity=0.181  Sum_probs=70.6

Q ss_pred             CCCCccccccccchHHHHHHH---HHHhhHHhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchH
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQ---EIQQSREAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIH  209 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLe---EM~~sr~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~  209 (439)
                      ||.|=-++-+..+.--+++|+   |+.+.   |-|.+=.+.+.+++.-.+     .-++.-+..-..||+.-||..|+ +
T Consensus        47 r~sGeA~Ve~~seedv~~AlkkdR~~mg~---RYIEVf~~~~~e~d~~~~-----~~g~~s~~~d~vVRLRGLPfsct-e  117 (510)
T KOG4211|consen   47 RPSGEAYVEFTSEEDVEKALKKDRESMGH---RYIEVFTAGGAEADWVMR-----PGGPNSSANDGVVRLRGLPFSCT-E  117 (510)
T ss_pred             CcCcceEEEeechHHHHHHHHhhHHHhCC---ceEEEEccCCcccccccc-----CCCCCCCCCCceEEecCCCccCc-H
Confidence            788888888888877777773   22222   333333333333322211     11222222344689999999997 9


Q ss_pred             HHHHHHhccCCCeeE-EeeccccCCCCCCCcccceEEEeecCHHHHHHHHHH
Q 013598          210 RDLKSAFKGVPGIIN-IIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQL  260 (439)
Q Consensus       210 kDL~~aFk~vGgvis-IkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk  260 (439)
                      +|+.+.|++..=|.. |.......  -   ..-|=|||.|++.+.|..++.+
T Consensus       118 ~dI~~FFaGL~Iv~~gi~l~~d~r--g---R~tGEAfVqF~sqe~ae~Al~r  164 (510)
T KOG4211|consen  118 EDIVEFFAGLEIVPDGILLPMDQR--G---RPTGEAFVQFESQESAEIALGR  164 (510)
T ss_pred             HHHHHHhcCCcccccceeeeccCC--C---CcccceEEEecCHHHHHHHHHH
Confidence            999999988654433 32222221  1   2347899999999999999875

>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A

Probab=85.58  E-value=0.25  Score=41.70  Aligned_cols=22  Identities=18%  Similarity=0.070  Sum_probs=0.0

Q ss_pred             ccccccchHHHHHHhhcCCCCcc
Q 013598          116 DEGMMISFGKMRRWLENKPRGFG  138 (439)
Q Consensus       116 dE~~~~~~~~M~~wl~nKPrGFG  138 (439)
                      ||++.+|=--..+ .++|-|-||
T Consensus        48 eeee~m~rK~k~r-~rkKrrwlw   69 (81)
T PF14812_consen   48 EEEEPMPRKGKKR-PRKKRRWLW   69 (81)
T ss_dssp             -----------------------
T ss_pred             hhccccccccccC-ccccchhHH
Confidence            4444445322223 444555555

>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]

Probab=84.77  E-value=1.1  Score=48.10  Aligned_cols=64  Identities=27%  Similarity=0.384  Sum_probs=47.2

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      .+|||||..... -.||+.+|+..      ++...+.-    -+--|+|||+..+..-|.++||.+||+-=.-||
T Consensus         3 klyignL~p~~~-psdl~svfg~a------k~~~~g~f----l~k~gyafvd~pdq~wa~kaie~~sgk~elqGk   66 (584)
T KOG2193|consen    3 KLYIGNLSPQVT-PSDLESVFGDA------KIPGSGQF----LVKSGYAFVDCPDQQWANKAIETLSGKVELQGK   66 (584)
T ss_pred             cccccccCCCCC-hHHHHHHhccc------cCCCCcce----eeecceeeccCCchhhhhhhHHhhchhhhhcCc
Confidence            589999998743 77999999665      11111110    022589999999999999999999998755554

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box

Probab=84.01  E-value=0.49  Score=41.51  Aligned_cols=33  Identities=27%  Similarity=0.288  Sum_probs=9.6

Q ss_pred             CCCCccccccccchHHHHHHhhcCCCCccccccccch
Q 013598          110 DADNDEDEGMMISFGKMRRWLENKPRGFGEGKVYDTS  146 (439)
Q Consensus       110 ~~~~~~dE~~~~~~~~M~~wl~nKPrGFG~GK~YdT~  146 (439)
                      ++|+|++|++=+|+...-+-|    .+|+-++-|=|+
T Consensus        30 dDddddee~de~p~p~fgea~----~~~~~v~rYltS   62 (101)
T PF09026_consen   30 DDDDDDEEEDEVPVPEFGEAM----AYFTMVKRYLTS   62 (101)
T ss_dssp             ----------------HHHHH----HHHHHHHHHHCT
T ss_pred             cccccccccccccchhHHHHH----hhcchHhhhhhc
Confidence            344444444556655554433    356677777554

CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.

>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]

Probab=82.50  E-value=3.4  Score=44.58  Aligned_cols=64  Identities=22%  Similarity=0.329  Sum_probs=52.1

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHH
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQL  260 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk  260 (439)
                      .+.+.+.-|++.-||-+++ ++||...|..++ |.++.    ..|.||  ...|=|||.|.+++++..++++
T Consensus         5 ~e~~~~~~vr~rGLPwsat-~~ei~~Ff~~~~-I~~~~----~~r~~G--r~sGeA~Ve~~seedv~~Alkk   68 (510)
T KOG4211|consen    5 NEGSTAFEVRLRGLPWSAT-EKEILDFFSNCG-IENLE----IPRRNG--RPSGEAYVEFTSEEDVEKALKK   68 (510)
T ss_pred             cCCCcceEEEecCCCcccc-HHHHHHHHhcCc-eeEEE----EeccCC--CcCcceEEEeechHHHHHHHHh
Confidence            3567788899999999986 999999998875 45543    344454  6789999999999999999986

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=81.96  E-value=2.8  Score=44.00  Aligned_cols=74  Identities=23%  Similarity=0.316  Sum_probs=51.6

Q ss_pred             cEEEEcCCCCCCchHHH----H--HHHhccCCCeeEEeeccccCCCC-CCCcccceE--EEeecCHHHHHHHHHHhCCce
Q 013598          195 IRVRLLNLPKKKNIHRD----L--KSAFKGVPGIINIIPVVSGNKKT-KDPICKGFA--FVDFESEDYATRFVQLFSRQI  265 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kD----L--~~aFk~vGgvisIkpAv~~nrKT-gDp~CKGFA--FVTf~seEdA~rfIEk~NGq~  265 (439)
                      .-|||--||.+.- ..+    |  .+.|..+|.|+.|..    |||| --+---|-+  |+||.+.|+|.|+|....|- 
T Consensus       115 NLvYVigi~pkva-~Ee~~~vLk~~eyFGQyGkI~KIvv----Nkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs-  188 (480)
T COG5175         115 NLVYVIGIPPKVA-DEEVAPVLKRHEYFGQYGKIKKIVV----NKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS-  188 (480)
T ss_pred             ceeEEecCCCCCC-cccccccccchhhhhhccceeEEEe----cccccccccccccceEEEEecchHHHHHHHHHhccc-
Confidence            4578888888742 332    2  478999999999852    3444 112224445  99999999999999999985 


Q ss_pred             eccceeece
Q 013598          266 IAFGKVQKQ  274 (439)
Q Consensus       266 ~~fgKVEK~  274 (439)
                      +++||+=|.
T Consensus       189 ~~DGr~lka  197 (480)
T COG5175         189 LLDGRVLKA  197 (480)
T ss_pred             cccCceEee
Confidence            466776553

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=81.30  E-value=0.63  Score=46.41  Aligned_cols=62  Identities=21%  Similarity=0.356  Sum_probs=51.0

Q ss_pred             ccccchHHHHHH-----hhc-CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCC
Q 013598          118 GMMISFGKMRRW-----LEN-KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPK  179 (439)
Q Consensus       118 ~~~~~~~~M~~w-----l~n-KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~  179 (439)
                      -.||||+|++.-     +++ |-||||.+-|.-..-+-.++.-|..++ -||.+-+|++++--++-.++
T Consensus        29 aAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kikegsq   97 (298)
T KOG0111|consen   29 AAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIKEGSQ   97 (298)
T ss_pred             hccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccccCCCC
Confidence            468999998753     333 999999999999999999999999999 89999999887755544443

>PTZ00415 transmission-blocking target antigen s230; Provisional

Probab=80.62  E-value=0.8  Score=55.41  Aligned_cols=36  Identities=33%  Similarity=0.547  Sum_probs=24.1

Q ss_pred             ceecCCCCCCCCCCCCCCcCCCCccccccccchHHH
Q 013598           91 EVVESDGSDSDDFDDFDEDDADNDEDEGMMISFGKM  126 (439)
Q Consensus        91 ~~v~~d~~~~d~~~d~~~~~~~~~~dE~~~~~~~~M  126 (439)
                      -++|.|++++|++||+++||++++++|+++-+|+|-
T Consensus       151 ~~~d~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~de  186 (2849)
T PTZ00415        151 FVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDE  186 (2849)
T ss_pred             cccCCccccccccccccccccccccccccccCCCch
Confidence            344444455555555666677777888888898876

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box

Probab=80.31  E-value=0.73  Score=40.51  Aligned_cols=34  Identities=29%  Similarity=0.545  Sum_probs=6.2

Q ss_pred             CCCCCCCCCCCcCCCCccccccccchHHHHHHhh
Q 013598           98 SDSDDFDDFDEDDADNDEDEGMMISFGKMRRWLE  131 (439)
Q Consensus        98 ~~~d~~~d~~~~~~~~~~dE~~~~~~~~M~~wl~  131 (439)
                      +++|+++++++||+|+|++|.-+..|+.-+.+|-
T Consensus        21 eeededEEedDddddee~de~p~p~fgea~~~~~   54 (101)
T PF09026_consen   21 EEEDEDEEEDDDDDDEEEDEVPVPEFGEAMAYFT   54 (101)
T ss_dssp             -------------------------HHHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhHHHHHhhcc
Confidence            3344445566777777777988888887766664

CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	439
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 62/468 (13%), Positives = 127/468 (27%), Gaps = 134/468 (28%)

Query: 1   MEHELAVLQQQERMINVGTVSPFDSASLLPPKKLNL---ALPNPLYPFISKNAM--FVSS 55
           M+ E    Q Q + I    +S F           N     + +     +SK  +   + S
Sbjct: 7   MDFETGEHQYQYKDI----LSVF-----EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS 57

Query: 56  PQQTQQARLGFKTIHNGLSLLCVSAVKNKWIKGGSEVVES--DGSDSDDFDDFDEDDADN 113
                     F         L              E+V+   +     ++          
Sbjct: 58  KDAVSGTLRLF-------WTLLSK---------QEEMVQKFVEEVLRINYKFLMSPIKTE 101

Query: 114 DED-EGMMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQ------MANI 166
                 M   + + R  L N  + F +  V       KL Q + + R A+      +   
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 167 NK--LENELLKPSPKKDEPKKKEPEDMPSGI---RVRLLNLPKK-----KNIHRDLKSAF 216
            K  +  ++           + +   M   I    ++  N P+      + +   +   +
Sbjct: 162 GKTWVALDVCL-----SYKVQCK---MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 217 KGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYAT-----RFVQLFSRQII-AFGK 270
                  + I +   + + +    +       +S+ Y         VQ  + +   AF  
Sbjct: 214 TSRSDHSSNIKLRIHSIQAEL---RRL----LKSKPYENCLLVLLNVQ--NAKAWNAFN- 263

Query: 271 VQKQIRCEMVNSSSSNSVDGHSSDDTSGYPKIKVYGFEEDPGAHFDDNEDSYGSVMEALS 330
               + C+++ ++    V    +D  S      +                     ++  S
Sbjct: 264 ----LSCKILLTTRFKQV----TDFLSAATTTHI--------------------SLDHHS 295

Query: 331 DGFEPDDELD-FAE-LEEVREDL--EFVTVSEL----------NGSNNTKPAKKSATDSS 376
               PD+      + L+   +DL  E +T +            +G       K    D  
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-- 353

Query: 377 SANQRKKIQAIEKKLTA--KGKVKKV-------PK-LNIPGSAKRLKV 414
                K    IE  L      + +K+       P   +IP     L +
Sbjct: 354 -----KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP--TILLSL 394

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 179 KKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDP 238
              E  K+       G  + + NL  +      L+ +F+G  G I  I + +G K+    
Sbjct: 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGF-GSIEKINIPAGQKEHSFN 253

Query: 239 ICKGFAFVDFESEDYATRFVQLFSRQI 265
                AF+ FE++D A R +Q+    +
Sbjct: 254 --NCCAFMVFENKDSAERALQMNRSLL 278

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	439
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.78
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.75
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.73
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.72
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.71
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.71
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.7
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.7
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.69
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.69
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.68
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.68
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.66
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.65
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.65
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.65
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.65
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.65
2div_A	99	TRNA selenocysteine associated protein; structural	99.64
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.64
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.64
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.63
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.63
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.63
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.63
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.63
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.63
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.62
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.62
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.62
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.62
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.62
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.62
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.62
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.61
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.61
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.61
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.61
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.61
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.61
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.6
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.6
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.6
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.6
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.6
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.6
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.59
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.59
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.59
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.59
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.59
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.59
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.59
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.59
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.58
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.58
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.58
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.58
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.58
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.58
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.58
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.58
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.58
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.58
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.58
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.58
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.58
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.57
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.57
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.57
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.57
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.57
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.57
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.56
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.56
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.56
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.56
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.56
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.56
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.55
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.55
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.55
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.55
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.55
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.55
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.55
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.54
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.54
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.54
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.54
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.54
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.54
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.53
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.53
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.53
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.53
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.53
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.52
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.52
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.52
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.52
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.52
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.51
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.51
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.51
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.51
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.51
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.51
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.51
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.5
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.5
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.5
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.5
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.5
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.5
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.49
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.49
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.49
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.49
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.49
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.49
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.49
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.48
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.48
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.48
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.48
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.48
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.48
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.47
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.47
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.47
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.47
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.47
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.47
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.47
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.46
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.46
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.46
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.46
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.46
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.45
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.45
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.44
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.44
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.44
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	99.16
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.44
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.43
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.43
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.43
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.43
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.43
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.43
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.42
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.42
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	99.41
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.41
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.41
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.41
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.4
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.4
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.4
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.4
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.4
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.39
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.39
1x5p_A	97	Negative elongation factor E; structure genomics,	99.38
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	99.38
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.37
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	99.37
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.37
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.36
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	99.35
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.35
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.35
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.35
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.34
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.34
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.33
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.32
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.32
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	99.29
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.28
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.27
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.27
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.26
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.25
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.23
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.23
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.23
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.22
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.18
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.14
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.13
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.13
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.12
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	99.1
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	99.09
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.09
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	98.97
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	98.96
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	98.88
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	98.79
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	98.65
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	98.35
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.32
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	98.1
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	97.74
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	97.64
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	97.0
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	95.85
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	95.25
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	94.48
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	94.29
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	93.91
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	93.71
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	93.41
2l08_A	97	Regulator of nonsense transcripts 3A; NESG, nonsen	93.33
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	93.23
1x5p_A	97	Negative elongation factor E; structure genomics,	92.92
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	92.85
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	92.42
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	92.4
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	92.02
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	92.0
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	91.96
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	91.94
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	91.91
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	91.89
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	91.82
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	91.58
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	91.52
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	91.44
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	91.43
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	91.37
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	91.34
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	91.31
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	91.27
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	91.26
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	91.21
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	90.91
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	90.89
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	90.85
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	90.7
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	90.68
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	90.57
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	90.46
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	90.44
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	90.4
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	90.35
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	90.33
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	90.32
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	90.23
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	90.22
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	90.22
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	89.64
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	90.11
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	90.09
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	90.07
1x4e_A	85	RNA binding motif, single-stranded interacting pro	90.0
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	89.96
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	89.95
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	89.86
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	89.67
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	89.57
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	89.44
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	89.41
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	89.33
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	89.3
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	89.21
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	89.1
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	88.99
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	88.93
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	88.88
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	88.83
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	88.68
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	88.53
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	88.45
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	88.44
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	88.42
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	88.39
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	88.38
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	88.34
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	88.27
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	88.23
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	88.21
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	88.08
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	88.07
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	88.01
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	87.94
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	87.93
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	87.76
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	87.58
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	87.47
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	87.44
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	87.4
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	87.37
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	87.23
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	87.15
2dis_A	109	Unnamed protein product; structural genomics, RRM	87.12
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	87.12
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	87.1
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	86.99
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	86.71
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	86.52
2div_A	99	TRNA selenocysteine associated protein; structural	86.48
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	86.36
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	86.3
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	85.34
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	85.32
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	85.07
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	85.07
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	84.97
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	84.79
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	84.62
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	84.54
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	84.47
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	84.44
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	83.9
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	83.85
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	83.82
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	83.8
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	83.66
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	83.54
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	83.5
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	82.87
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	82.73
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	82.52
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	82.41
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	82.3
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	81.67
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	81.48
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	81.21
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	81.19
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	80.75
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	80.1

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.78  E-value=9.3e-19  Score=144.42  Aligned_cols=142  Identities=13%  Similarity=0.240  Sum_probs=103.7

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhHH-hhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHH
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSRE-AQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRD  211 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr~-araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~kD  211 (439)
                      +++|||++.|.+.+.++++|+++.+... .....++............   .............+|||+|||...+ +.+
T Consensus        11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~v~nl~~~~~-~~~   86 (158)
T 2kn4_A           11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS---HHHHHHMDVEGMTSLKVDNLTYRTS-PDT   86 (158)
T ss_dssp             SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC---CCSSCCCCCCBCCEEEEESCCTTCC-HHH
T ss_pred             cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc---cccccccCCCCCCEEEEeCCCCCCC-HHH
Confidence            7899999999999999999999876431 1111111111100000000   0111223345688999999999865 889


Q ss_pred             HHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCCCC
Q 013598          212 LKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       212 L~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~S~~  286 (439)
                      |+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.    -+.|+|+.+....+.
T Consensus        87 l~~~F~~~G~v~~~~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~~~~~  153 (158)
T 2kn4_A           87 LRRVFEKYGRVGDVY--IPRDRYTK--ESRGFAFVRFHDKRDAEDAMDAMDGAVLD----GRELRVQMARYGRPP  153 (158)
T ss_dssp             HHHHHHHHSCEEEEE--CCCCSSCT--TSCCEEEEEESBHHHHHHHHHHSTTEESS----SSEEEEEEECCSSCC
T ss_pred             HHHHHHhcCCeEEEE--EeecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEECCCCCCC
Confidence            999999999999998  56666686  89999999999999999999999999976    367888888766443

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.75  E-value=4.8e-18  Score=135.99  Aligned_cols=126  Identities=19%  Similarity=0.224  Sum_probs=102.4

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR  210 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~k  210 (439)
                      .+++|||++.|.+.+.++++++.|.+.. .++.+.+......+.              .....+.+|||+|||...+ ..
T Consensus        38 ~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~--------------~~~~~~~~l~v~nl~~~~t-~~  102 (166)
T 3md3_A           38 NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ--------------SSSDDTFNLFVGDLNVNVD-DE  102 (166)
T ss_dssp             -CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC--------------CCCTTCEEEEEESCCTTCC-HH
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC--------------CCCCCCceEEECCCCCCCC-HH
Confidence            3689999999999999999999998876 666666654332211              2334677999999999865 88


Q ss_pred             HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeee
Q 013598          211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMV  280 (439)
Q Consensus       211 DL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~  280 (439)
                      +|+.+|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.+    +.|+|..+
T Consensus       103 ~l~~~f~~~G~i~~~~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~i~v~~a  164 (166)
T 3md3_A          103 TLRNAFKDFPSYLSGH--VMWDMQTG--SSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPLRINWA  164 (166)
T ss_dssp             HHHHHHTTSTTEEEEE--EEECTTTC--CEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEES
T ss_pred             HHHHHHhccCCeeEEE--EEecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCCccCC----cEEEEEec
Confidence            9999999999999998  55566676  899999999999999999999999999874    45666554

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.73  E-value=1.6e-17  Score=137.73  Aligned_cols=143  Identities=12%  Similarity=0.150  Sum_probs=108.9

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCC----CCCCCCCCCCCccEEEEcCCCCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDE----PKKKEPEDMPSGIRVRLLNLPKKK  206 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~----~akk~~e~~~dgvRVrVGNLPkk~  206 (439)
                      .++||||++.|.+.+.++++| +|.+.. .++.+.+................    ...........+-+|||+|||...
T Consensus        48 ~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~  126 (198)
T 2yh0_A           48 NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYL  126 (198)
T ss_dssp             ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTC
T ss_pred             cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCC
Confidence            478999999999999999999 888766 78888877665532211111100    011122233578999999999986


Q ss_pred             chHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCC
Q 013598          207 NIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSS  284 (439)
Q Consensus       207 ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~S  284 (439)
                      + ..+|+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.+    +.++++.+....
T Consensus       127 ~-~~~l~~~f~~~G~v~~~~--~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~~  195 (198)
T 2yh0_A          127 N-DDQVKELLTSFGPLKAFN--LVKDSATG--LSKGYAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRASVGA  195 (198)
T ss_dssp             C-HHHHHHHHHTBSCEEEEE--EEECTTTC--SEEEEEEEEESSSSHHHHHHHHHTTCEETT----EECEEEESCCCC
T ss_pred             C-HHHHHHHHHHcCCccEEE--EeecCCCC--CcceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCCC
Confidence            5 889999999999999998  45565576  899999999999999999999999999863    567777766543

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.72  E-value=1.9e-17  Score=133.69  Aligned_cols=124  Identities=13%  Similarity=0.176  Sum_probs=99.9

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHH
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRD  211 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~kD  211 (439)
                      +++|||++.|.+.+.++++++.|.+.. .++.+.+....+.+                ....+.+|||+|||...+ ..+
T Consensus        43 ~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~----------------~~~~~~~l~v~nl~~~~t-~~~  105 (168)
T 1b7f_A           43 YSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGG----------------ESIKDTNLYVTNLPRTIT-DDQ  105 (168)
T ss_dssp             EECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCS----------------STTTTCEEEEESCCTTCC-HHH
T ss_pred             ccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCc----------------ccCCCCCEEEeCCCCCCC-HHH
Confidence            588999999999999999999998866 66666665433211                123457899999999865 889


Q ss_pred             HHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeee
Q 013598          212 LKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEM  279 (439)
Q Consensus       212 L~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~  279 (439)
                      |+.+|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++++.+||..|.++  .++|++..
T Consensus       106 l~~~f~~~G~i~~~~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~~~l~V~~  167 (168)
T 1b7f_A          106 LDTIFGKYGSIVQKN--ILRDKLTG--RPRGVAFVRYNKREEAQEAISALNNVIPEGG--SQPLSVRL  167 (168)
T ss_dssp             HHHHHTSSSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCCCTTC--SSCCEEEE
T ss_pred             HHHhhhcCCcEEEEE--EEEcCCCC--CcceEEEEEECCHHHHHHHHHHhcCCEecCC--CeEEEEEe
Confidence            999999999999998  44555565  7899999999999999999999999998764  35555544

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.71  E-value=1.8e-17  Score=136.86  Aligned_cols=136  Identities=18%  Similarity=0.258  Sum_probs=105.0

Q ss_pred             CCCCccccccccchHHHHHHHHH-HhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEI-QQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR  210 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM-~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~k  210 (439)
                      +-+|++.+.+.+.+.+++++++| .+.. +| +++++.....+.....................-+|||+|||...+ +.
T Consensus        11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t-~~   88 (150)
T 2i2y_A           11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN-KT   88 (150)
T ss_dssp             SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS-CH
T ss_pred             cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC-HH
Confidence            67899999999999999999999 6766 66 888887665432211111011112334456788999999999865 88


Q ss_pred             HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCC
Q 013598          211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSS  283 (439)
Q Consensus       211 DL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~  283 (439)
                      +|+.+|..+|.|.+|++.  .+       +||||||+|.+.++|.++|+.+||..|.    -+.|+|+.+...
T Consensus        89 ~l~~~F~~~G~i~~v~i~--~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~~  148 (150)
T 2i2y_A           89 ELERAFGYYGPLRSVWVA--RN-------PPGFAFVEFEDPRDAADAVRELDGRTLC----GCRVRVELSNGE  148 (150)
T ss_dssp             HHHHHHHHHSCEEEEEEC--SS-------SCSEEEEEESSHHHHHHHHHHHSSSCSS----SSCCEEEECCCC
T ss_pred             HHHHHHHhhCCEEEEEEe--eC-------CCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEEcCCC
Confidence            999999999999999843  22       4899999999999999999999999986    367777776554

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.71  E-value=2e-17  Score=134.48  Aligned_cols=122  Identities=11%  Similarity=0.193  Sum_probs=96.7

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHH
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRD  211 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~kD  211 (439)
                      +++|||++.|.+.+.+++++ +|.+.. .++.+.+......                .....+.+|||+|||...+ +.+
T Consensus        49 ~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~----------------~~~~~~~~l~v~nlp~~~t-~~~  110 (172)
T 2g4b_A           49 QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY----------------QPLPGAHKLFIGGLPNYLN-DDQ  110 (172)
T ss_dssp             TTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSC----------------CCCTTTTCEEEECCCTTCC-HHH
T ss_pred             CCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCccc----------------CCCCCCCEEEEEcCCCcCC-HHH
Confidence            67999999999999999999 777755 6666555421111                1123478899999999865 889


Q ss_pred             HHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeee
Q 013598          212 LKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMV  280 (439)
Q Consensus       212 L~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~  280 (439)
                      |+++|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.+    +.++++.+
T Consensus       111 l~~~f~~~G~v~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~A  171 (172)
T 2g4b_A          111 VKELLTSFGPLKAFN--LVKDSATG--LSKGYAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRA  171 (172)
T ss_dssp             HHHHHHTTSCEEEEE--EEECTTTC--SEEEEEEEEESSTTHHHHHHHHHTTCEETT----EECEEEEC
T ss_pred             HHHHHHhcCCceEEE--EEecCCCC--CcceEEEEEeCCHHHHHHHHHHcCCCEECC----eEEEEEeC
Confidence            999999999999998  45555575  899999999999999999999999999874    34555443

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.70  E-value=3.7e-17  Score=134.07  Aligned_cols=124  Identities=17%  Similarity=0.172  Sum_probs=98.7

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR  210 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~k  210 (439)
                      .++||||++.|.+.+.++++| +|.+.. .++.+.+......+.              .....+.+|||+|||...+ +.
T Consensus        51 ~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~--------------~~~~~~~~l~v~nlp~~~t-~~  114 (175)
T 1fje_B           51 GTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDS--------------KKVRAARTLLAKNLSFNIT-ED  114 (175)
T ss_dssp             ETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSC--------------STTGGGGEEEEESCCSSCC-HH
T ss_pred             CccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCccc--------------cccccCCEEEEeCCCCCCC-HH
Confidence            379999999999999999999 687766 667666654332211              1223678999999999865 88


Q ss_pred             HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCC
Q 013598          211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSS  284 (439)
Q Consensus       211 DL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~S  284 (439)
                      +|+.+|..+|.|..+       +.||  .+||||||+|.+.++|.++|+.+||+.|.+    +.|+|+.+..+|
T Consensus       115 ~l~~~F~~~g~v~~~-------~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~i~v~~a~~k~  175 (175)
T 1fje_B          115 ELKEVFEDALEIRLV-------SQDG--KSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVSLYYTGEKG  175 (175)
T ss_dssp             HHHHHCTTCSEEEEE-------CSSS--SCCSEEEEECSSHHHHHHHHHHHTEEEETT----EEEEEEECSSCC
T ss_pred             HHHHHHHhcCeEEEe-------cCCC--CCceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEecCCCC
Confidence            999999999987655       3454  789999999999999999999999999874    567887776553

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.70  E-value=3.2e-17  Score=131.33  Aligned_cols=117  Identities=15%  Similarity=0.222  Sum_probs=95.0

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR  210 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~k  210 (439)
                      ++++|||++.|.+.+.+++++++|.+.. .++.+.+....+.+                ....+.+|||+|||...+ ..
T Consensus        41 ~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~----------------~~~~~~~l~v~nl~~~~t-~~  103 (167)
T 1fxl_A           41 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS----------------ASIRDANLYVSGLPKTMT-QK  103 (167)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC----------------GGGTTCEEEEESCCTTCC-HH
T ss_pred             CcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCc----------------ccCCCCcEEECCCCCcCC-HH
Confidence            3678999999999999999999998866 56655554332211                123456899999999865 88


Q ss_pred             HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       211 DL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      +|+.+|..+|.|..++  ...++.||  .+||||||+|.+.++|.++++.+||..|.+.
T Consensus       104 ~l~~~f~~~G~i~~~~--i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~  158 (167)
T 1fxl_A          104 ELEQLFSQYGRIITSR--ILVDQVTG--VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA  158 (167)
T ss_dssp             HHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred             HHHHHHHhcCCEeEEE--EEecCCCC--CccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence            9999999999999998  44555565  8899999999999999999999999998753

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.69  E-value=6.5e-17  Score=127.94  Aligned_cols=84  Identities=17%  Similarity=0.269  Sum_probs=72.0

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .....|.+|||+|||...+ +.+|+++|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus        14 n~~~~gt~lfV~nLp~~~t-e~~L~~~F~~~G~I~~v~--i~~d~~tg--~~kG~afV~f~~~~~A~~Ai~~lng~~~~g   88 (99)
T 4fxv_A           14 NLYFQGTNLIVNYLPQNMT-QDELRSLFSSIGEVESAK--LIRDKVAG--HSLGYGFVNYVTAKDAERAINTLNGLRLQS   88 (99)
T ss_dssp             --CCCCSEEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--EEECSSSC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             cccCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEeE--eeecCCCC--cccccEEEEECCHHHHHHHHHHhCCCEECC
Confidence            3446789999999999865 889999999999999998  55677787  899999999999999999999999999874


Q ss_pred             ceeeceeeeeeec
Q 013598          269 GKVQKQIRCEMVN  281 (439)
Q Consensus       269 gKVEK~ikcE~~~  281 (439)
                          +.|+|+.+.
T Consensus        89 ----r~l~V~~Ak   97 (99)
T 4fxv_A           89 ----KTIKVSYAR   97 (99)
T ss_dssp             ----EECEEEECC
T ss_pred             ----EEEEEEEee
Confidence                567777664

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.69  E-value=1.1e-17  Score=140.61  Aligned_cols=138  Identities=14%  Similarity=0.176  Sum_probs=103.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR  210 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~k  210 (439)
                      .+++|||++.|.+.+.++++|++|.+.. .++.+.+......+.. .+.    ............+|||+|||...+ ..
T Consensus        67 g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~-~~~----~~~~~~~~~~~~~l~v~nlp~~~t-~~  140 (216)
T 2qfj_A           67 MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQA-QPI----IDQLAEEARAFNRIYVASVHQDLS-DD  140 (216)
T ss_dssp             -CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGG-HHH----HHHHHHHHTTSCEEEEECCCTTCC-HH
T ss_pred             CccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCcccc-chh----hhhhhcccCCCcEEEEeCCCCcCC-HH
Confidence            3689999999999999999999998866 6666665432221110 000    000111234668999999999865 88


Q ss_pred             HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCC
Q 013598          211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSS  283 (439)
Q Consensus       211 DL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~  283 (439)
                      +|+++|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.+    +.|+++.+...
T Consensus       141 ~l~~~f~~~G~v~~v~--i~~~~~~g--~~~g~afV~F~~~~~A~~A~~~l~g~~~~g----~~i~V~~a~~~  205 (216)
T 2qfj_A          141 DIKSVFEAFGKIKSAT--LARDPTTG--KHKGYGFIEYEKAQSSQDAVSSMNLFDLGG----QYLRVGKAVTP  205 (216)
T ss_dssp             HHHHHHTTSSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCBCSS----SBCEEEECSSC
T ss_pred             HHHHHHhccCCeeEEE--EEecCCCC--CcCceEEEEecCHHHHHHHHHHccCCEeCC----cEEEEEEecCC
Confidence            9999999999999998  55666676  899999999999999999999999999863    56777776654

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.68  E-value=6.3e-17  Score=130.99  Aligned_cols=127  Identities=12%  Similarity=0.171  Sum_probs=96.0

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhHH----hhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCch
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSRE----AQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNI  208 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr~----araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni  208 (439)
                      +++|||++.|.+.+.++++++.|.+..-    ++.+.+...               .........+-+|||+|||...+ 
T Consensus        45 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~v~nl~~~~t-  108 (175)
T 3nmr_A           45 QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPA---------------DSEKNNAVEDRKLFIGMISKKCT-  108 (175)
T ss_dssp             EEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEEC---------------GGGCCSCGGGSEEEEESCCTTCC-
T ss_pred             CcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccc---------------cccccccCCCCeEEEcCCCCcCC-
Confidence            6899999999999999999999876441    122222111               11112234667899999999865 


Q ss_pred             HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeec
Q 013598          209 HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVN  281 (439)
Q Consensus       209 ~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~  281 (439)
                      +.+|+++|..+|.|.++++.  .++ +|  .+||||||+|.+.++|.++|+.+||..+..|- .++|++..++
T Consensus       109 ~~~l~~~F~~~G~i~~v~~~--~~~-~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~-~~~l~V~~ad  175 (175)
T 3nmr_A          109 ENDIRVMFSSFGQIEECRIL--RGP-DG--LSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGC-SSPMVVKFAD  175 (175)
T ss_dssp             HHHHHHHHGGGSCEEEEEEE--ECT-TS--CEEEEEEEEESSHHHHHHHHHHHTTSCCCTTC-SSCCEEEECC
T ss_pred             HHHHHHHHHhCCCEEEEEEE--ECC-CC--CEEEEEEEEECCHHHHHHHHHHhcCCcccCCC-CCCeEEEecC
Confidence            88999999999999999844  332 44  89999999999999999999999999987641 3566666553

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.68  E-value=4.7e-17  Score=134.80  Aligned_cols=134  Identities=14%  Similarity=0.178  Sum_probs=95.0

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhHHhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHHH
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDL  212 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~kDL  212 (439)
                      ++||||++.|.+.+.++++|+..+..-.++.+.+......+...          .+......-+|||+|||...+ +.+|
T Consensus        53 ~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~----------~~~~~~~~~~l~V~nLp~~~t-~~~l  121 (196)
T 1l3k_A           53 RSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ----------RPGAHLTVKKIFVGGIKEDTE-EHHL  121 (196)
T ss_dssp             CEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC---------------------CCSEEEEECCTTTCC-HHHH
T ss_pred             CccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCccccc----------ccccCCCcceEEEeCCCCCCC-HHHH
Confidence            68999999999999999999662222255555555433222111          112234567999999999865 8899


Q ss_pred             HHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCCCC
Q 013598          213 KSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       213 ~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~S~~  286 (439)
                      +++|..+|.|.+|+  ...++.||  .+||||||.|.+.++|.++|+. +|+.|.+    +.|.|..+.++...
T Consensus       122 ~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~F~~~~~A~~A~~~-~~~~~~G----~~i~v~~a~~k~~~  186 (196)
T 1l3k_A          122 RDYFEQYGKIEVIE--IMTDRGSG--KKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG----HNCEVRKALSKQEM  186 (196)
T ss_dssp             HHHHTTTSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHC-SCCEETT----EECEEEECC-----
T ss_pred             HHHHhcCCCeEEEE--EeecCCCC--CccceEEEEECCHHHHHHHHHh-CCcEECC----EEEEEEecCChhHh
Confidence            99999999999998  55566676  8999999999999999999997 8988774    45666666555443

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.66  E-value=2.4e-16  Score=132.98  Aligned_cols=90  Identities=17%  Similarity=0.267  Sum_probs=74.6

Q ss_pred             CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       188 ~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      +....++-+|||+|||..++ ..+|+.+|..+|.|.+|.  ...++.||  .+||||||+|.+.++|.++|+.|||..|.
T Consensus        66 ~~~~~~~~~l~V~nLp~~~t-~~~L~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~  140 (165)
T 1rk8_A           66 PQRSVEGWILFVTSIHEEAQ-EDEIQEKFCDYGEIKNIH--LNLDRRTG--FSKGYALVEYETHKQALAAKEALNGAEIM  140 (165)
T ss_dssp             CCCCC-CEEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTS--SEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred             CCCCCCCCEEEEeCCCCCCC-HHHHHHHhhcCCCEEEEE--EEecCCCC--cEeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            34456788999999999865 889999999999999998  55666786  89999999999999999999999999986


Q ss_pred             cceeeceeeeeeecCCCCC
Q 013598          268 FGKVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       268 fgKVEK~ikcE~~~~~S~~  286 (439)
                      +    +.|+|+.+...++.
T Consensus       141 g----~~l~V~~a~~~~~~  155 (165)
T 1rk8_A          141 G----QTIQVDWCFVKGPK  155 (165)
T ss_dssp             T----EECEEEESEECC--
T ss_pred             C----EEEEEEEecCCCCC
Confidence            3    56777777665543

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.65  E-value=2.6e-16  Score=139.87  Aligned_cols=133  Identities=17%  Similarity=0.222  Sum_probs=100.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCC-CchH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKK-KNIH  209 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk-~ni~  209 (439)
                      ++++|||++.|.+...+.++++.|.+.. .++.+.+..+.+.....         +.......+-+|||+|||.. .+ .
T Consensus       156 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~---------~~~~~~~~~~~l~v~nlp~~~~t-~  225 (292)
T 2ghp_A          156 NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSK---------RTDSATLEGREIMIRNLSTELLD-E  225 (292)
T ss_dssp             ---CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC------------------CCTTTEEEEEEECTTTCC-H
T ss_pred             CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccc---------cccccCCCCceEEEECCCcccCC-H
Confidence            4699999999999999999999999876 77777776544221110         01234567889999999998 65 8


Q ss_pred             HHHHHHhccCCCeeEEeeccccCCC-CCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCC
Q 013598          210 RDLKSAFKGVPGIINIIPVVSGNKK-TKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSS  283 (439)
Q Consensus       210 kDL~~aFk~vGgvisIkpAv~~nrK-TgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~  283 (439)
                      .+|+++|..+|.|.+|++  ..++. ||  .+||||||+|.+.++|.++| .+||+.|.+    +.|+|..+..+
T Consensus       226 ~~l~~~F~~~G~v~~v~i--~~~~~~tg--~~~g~afV~F~~~~~A~~A~-~l~g~~~~g----~~i~V~~a~~k  291 (292)
T 2ghp_A          226 NLLRESFEGFGSIEKINI--PAGQKEHS--FNNCCAFMVFENKDSAERAL-QMNRSLLGN----REISVSLADKK  291 (292)
T ss_dssp             HHHHHHHGGGSCEEEEEC--CSCCC-----CCCEEEEEEESSHHHHHHHG-GGTTEEETT----EEEEEEECCCC
T ss_pred             HHHHHHHhccCCeeEEEE--EecCCcCC--CCceEEEEEeCCHHHHHHHH-HhcCCEECC----cEEEEEEecCC
Confidence            899999999999999984  34443 55  89999999999999999999 999999873    56777776654

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.65  E-value=1.5e-15  Score=119.68  Aligned_cols=93  Identities=23%  Similarity=0.239  Sum_probs=78.0

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ...+.-+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.|||+.|.+ 
T Consensus        11 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-   84 (115)
T 2dgo_A           11 DTSNHFHVFVGDLSPEIT-TEDIKAAFAPFGRISDAR--VVKDMATG--KSKGYGFVSFFNKWDAENAIQQMGGQWLGG-   84 (115)
T ss_dssp             CSTTCEEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHTTTCEETT-
T ss_pred             CCCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEEcCCCC--CcceEEEEEECCHHHHHHHHHHhCCCEECC-
Confidence            345788999999999865 889999999999999998  45666676  899999999999999999999999999773 


Q ss_pred             eeeceeeeeeecCCCCCCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSNSVDGH  291 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~~~~~~  291 (439)
                         +.|+|+.+...........
T Consensus        85 ---~~l~V~~a~~~~~~~~~~~  103 (115)
T 2dgo_A           85 ---RQIRTNWATRKPPAPKSTY  103 (115)
T ss_dssp             ---EECEEEESSCCCCCSCCCC
T ss_pred             ---EEEEEEEccCCCCCCcccc
Confidence               6788888887766544333

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.65  E-value=6.9e-17  Score=130.70  Aligned_cols=124  Identities=16%  Similarity=0.224  Sum_probs=93.6

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhHHhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRD  211 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~kD  211 (439)
                      .+++|||++.|.+.+.++++++.+ ..-.++.+.+.....       .         ......-+|||+|||...+ +.+
T Consensus        42 g~~~g~afV~f~~~~~a~~A~~~~-~~~~g~~i~v~~~~~-------~---------~~~~~~~~l~V~nlp~~~t-~~~  103 (167)
T 2cjk_A           42 GRSRGFGFLSFEKPSSVDEVVKTQ-HILDGKVIDPKRAIP-------R---------DEQDKTGKIFVGGIGPDVR-PKE  103 (167)
T ss_dssp             SSCCSCEEEEESSTHHHHHHHHSC-CEETTEECCCEECCC-------H---------HHHHHCEEEEEEEECTTCC-HHH
T ss_pred             CCccceEEEEEccHHHHHHHHhcc-cccCCeEcccccccc-------h---------hhccCCCeEEECCCCCCCC-HHH
Confidence            479999999999999999999742 111333333322111       0         1112455899999999865 889


Q ss_pred             HHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecC
Q 013598          212 LKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNS  282 (439)
Q Consensus       212 L~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~  282 (439)
                      |+++|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++++ +||..|.+    +.|+|..+.+
T Consensus       104 l~~~F~~~G~i~~~~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~i~V~~a~p  165 (167)
T 2cjk_A          104 FEEFFSQWGTIIDAQ--LMLDKDTG--QSRGFGFVTYDSADAVDRVCQ-NKFIDFKD----RKIEIKRAEP  165 (167)
T ss_dssp             HHHHHHTTSCCSEEE--CCCSSSSS--TTSEEEEEEESSHHHHHHHHH-CSEECSSS----SCEEEEECCC
T ss_pred             HHHHHHhCccEEEEE--EEEcCCCC--ccceEEEEEECCHHHHHHHHh-CCCEEeCC----eEEEEeecCC
Confidence            999999999999998  55666676  899999999999999999998 79998874    5666766654

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.65  E-value=1e-16  Score=138.80  Aligned_cols=126  Identities=15%  Similarity=0.223  Sum_probs=96.9

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR  210 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~k  210 (439)
                      ++++|||++.|.+...++++|++|.+.. .++.+.+......+.              ......-+|||+|||...+ ++
T Consensus        54 g~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~--------------~~~~~~~~l~v~nl~~~~t-~~  118 (213)
T 4f02_A           54 RRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPS--------------LRKSGVGNIFIKNLDKSID-NK  118 (213)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTH--------------HHHHCTTEEEEESCCTTCC-HH
T ss_pred             CCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccc--------------ccccccccceECCcccccH-HH
Confidence            5899999999999999999999998765 555554332211110              0111345899999999865 88


Q ss_pred             HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecC
Q 013598          211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNS  282 (439)
Q Consensus       211 DL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~  282 (439)
                      +|+++|..+|.|.++++..  ++.    .+||||||+|.+.++|.++|+.+||+.|.+    +.|+++.+..
T Consensus       119 ~l~~~F~~~G~i~~~~i~~--d~~----~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g----~~i~V~~a~~  180 (213)
T 4f02_A          119 ALYDTFSAFGNILSCKVVC--DEN----GSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVGRFKS  180 (213)
T ss_dssp             HHHHHHGGGSCEEEEEEEE--ETT----EEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEECCC
T ss_pred             HHHHHHhhcCCeEEEEeec--cCC----CCceEEEEEeCCHHHHHHHHHHhCCCEECC----EEEEEEEcCC
Confidence            9999999999999998543  321    369999999999999999999999999874    4566666654

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=1.7e-15  Score=115.20  Aligned_cols=89  Identities=18%  Similarity=0.250  Sum_probs=76.4

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      .+++-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.|+  .+||||||+|.+.++|.++|+.+||+.|.   
T Consensus         2 ~~~~~~l~v~nlp~~~t-~~~l~~~f~~~G~v~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~---   73 (95)
T 2dnz_A            2 SSGSSGLYVGSLHFNIT-EDMLRGIFEPFGKIDNIV--LMKDSDTG--RSKGYGFITFSDSECARRALEQLNGFELA---   73 (95)
T ss_dssp             CSCCCEEEEESCCTTCC-HHHHHHHHTTTSCEEEEE--EECCSSSC--CCCSEEEEEESCHHHHHHHHHHHTTCCSS---
T ss_pred             CCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCEeEEE--EeecCCCC--ceeeEEEEEECCHHHHHHHHHHhCCCeeC---
Confidence            45778999999999865 889999999999999998  55666676  89999999999999999999999999987   


Q ss_pred             eeceeeeeeecCCCCCCC
Q 013598          271 VQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       271 VEK~ikcE~~~~~S~~~~  288 (439)
                       .+.|+++.+..+....+
T Consensus        74 -g~~l~V~~a~~~~~~~~   90 (95)
T 2dnz_A           74 -GRPMRVGHVTERLDGGS   90 (95)
T ss_dssp             -SSCCEEEESSCCCCCCC
T ss_pred             -CcEEEEEEcccccCCCC
Confidence             46788888877665544

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=7.8e-16  Score=118.15  Aligned_cols=91  Identities=14%  Similarity=0.198  Sum_probs=78.5

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCee-EEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGII-NIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvi-sIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...++-+|||+|||...+ +.+|+.+|..+|.|. +++  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus         5 ~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   79 (99)
T 2div_A            5 SSGMAASLWMGDLEPYMD-ENFISRAFATMGETVMSVK--IIRNRLTG--IPAGYCFVEFADLATAEKCLHKINGKPLPG   79 (99)
T ss_dssp             CCSSSSEEEECSCCTTCC-HHHHHHHHHHTTCCCCEEE--EEECSSSC--CEEEEEEEECSCHHHHHHHHHTTTTSEESS
T ss_pred             CCCCccEEEEeCCCCCCC-HHHHHHHHHHhCCcceEEE--EeecCCCC--CcCCEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence            345788999999999865 889999999999999 998  55666686  889999999999999999999999999987


Q ss_pred             ceeeceeeeeeecCCCC
Q 013598          269 GKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~  285 (439)
                      .++.+.++++.+.....
T Consensus        80 ~~~~~~l~v~~a~~~~~   96 (99)
T 2div_A           80 ATPAKRFKLNYATYSGP   96 (99)
T ss_dssp             CSSCEECCEEETTCCSS
T ss_pred             CCcceeEEEeecCCCCC
Confidence            76677799988876543

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1.6e-15  Score=117.49  Aligned_cols=90  Identities=18%  Similarity=0.293  Sum_probs=76.7

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ...+.-+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++.|+  .+||||||+|.+.++|.++|+.|||+.|.  
T Consensus         9 ~~~~~~~l~V~nLp~~~t-~~~l~~~f~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~--   81 (103)
T 2dnm_A            9 DVDGMITLKVDNLTYRTS-PDSLRRVFEKYGRVGDVY--IPREPHTK--APRGFAFVRFHDRRDAQDAEAAMDGAELD--   81 (103)
T ss_dssp             CCSCCCEEEEESCCTTCC-HHHHHHHHTTTSCEEEEE--CCBCSSSC--SBCSCEEEEESSSSHHHHHHHHHSSCCBT--
T ss_pred             CCCCCeEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEeCCCCC--CCCeEEEEEECCHHHHHHHHHHcCCCEEC--
Confidence            345678999999999865 889999999999999998  55666676  89999999999999999999999999987  


Q ss_pred             eeeceeeeeeecCCCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~~~  288 (439)
                        -+.|+++.+.......+
T Consensus        82 --g~~l~V~~a~~~~~~~~   98 (103)
T 2dnm_A           82 --GRELRVQVARYGRRDLS   98 (103)
T ss_dssp             --TBCCEEEECSSCCSCCC
T ss_pred             --CcEEEEEECCcCCCCCC
Confidence              36788888876655444

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.64  E-value=2.4e-15  Score=115.42  Aligned_cols=88  Identities=19%  Similarity=0.191  Sum_probs=75.3

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ...++-+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||..|.  
T Consensus         4 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~--   76 (99)
T 1whw_A            4 GSSGSGRLFVRNLSYTSS-EEDLEKLFSAYGPLSELH--YPIDSLTK--KPKGFAFVTFMFPEHAVKAYAEVDGQVFQ--   76 (99)
T ss_dssp             CCCSCEEEEEECCCTTCC-HHHHHHHHHTTSCEEEEE--CCCCTTTC--CCCSEEEEEESSHHHHHHHHHHTTTEESS--
T ss_pred             CCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEeEEE--EEecCCCC--CcCeEEEEEECCHHHHHHHHHHhCCCEEC--
Confidence            346788999999999865 889999999999999998  55666676  89999999999999999999999999987  


Q ss_pred             eeeceeeeeeecCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~  286 (439)
                        -+.++++.+..+...
T Consensus        77 --g~~l~V~~a~~~~~~   91 (99)
T 1whw_A           77 --GRMLHVLPSTIKKEA   91 (99)
T ss_dssp             --SCEEEEEECCCCSTT
T ss_pred             --CcEEEEEEcCCCccc
Confidence              466788887776543

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=1.7e-15  Score=116.84  Aligned_cols=91  Identities=23%  Similarity=0.325  Sum_probs=77.9

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...++.-+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++.|+  .+||||||+|.+.++|.++|+.+||..|. 
T Consensus         7 ~~~~~~~~l~v~nLp~~~t-~~~l~~~f~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~-   80 (102)
T 1x5s_A            7 GMASDEGKLFVGGLSFDTN-EQSLEQVFSKYGQISEVV--VVKDRETQ--RSRGFGFVTFENIDDAKDAMMAMNGKSVD-   80 (102)
T ss_dssp             CCCCCCSEEEEESCCTTCC-HHHHHHHHHHHSCCCEEE--ECCCSSSC--SCCSEEEEECSSHHHHHHHHHHHTTCCTT-
T ss_pred             CCCCCCCEEEEECCCCCCC-HHHHHHHHHhcCCeEEEE--EEeCCCCC--CcccEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence            3456788999999999865 889999999999999998  55666676  89999999999999999999999999987 


Q ss_pred             ceeeceeeeeeecCCCCCCC
Q 013598          269 GKVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~~~~  288 (439)
                         .+.|+|+.+...+...+
T Consensus        81 ---g~~l~v~~a~~~~~~~~   97 (102)
T 1x5s_A           81 ---GRQIRVDQAGKSSDNRS   97 (102)
T ss_dssp             ---SCCCEEEEEECCCCCCC
T ss_pred             ---CeEEEEEECCCCCCCCC
Confidence               46788888887766544

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.63  E-value=1.1e-15  Score=123.59  Aligned_cols=82  Identities=16%  Similarity=0.054  Sum_probs=71.4

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ++.-+|||+|||...+ +.+|+++|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.+   
T Consensus         4 ~p~~~lfV~nL~~~~t-e~~L~~~F~~~G~i~~v~--i~~d~~tg--~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g---   75 (110)
T 3s8s_A            4 IPLKEVTFARLNDNVR-ETFLKDMCRKYGEVEEVE--ILLHPRTR--KHLGLARVLFTSTRGAKETVKNLHLTSVMG---   75 (110)
T ss_dssp             SCCCEEEEESCCTTCC-HHHHHHHHTTTSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred             CCCcEEEEECCCCCCC-HHHHHHHHHhcCCeeEEE--EEECCCCC--ceeeEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence            4677999999999865 889999999999999998  56677787  999999999999999999999999999884   


Q ss_pred             eceeeeeeecC
Q 013598          272 QKQIRCEMVNS  282 (439)
Q Consensus       272 EK~ikcE~~~~  282 (439)
                       +.|+|+++..
T Consensus        76 -r~i~V~~a~~   85 (110)
T 3s8s_A           76 -NIIHAQLDIK   85 (110)
T ss_dssp             -EECEEEECST
T ss_pred             -eEEEEEECCC
Confidence             4566666643

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.63  E-value=2.8e-16  Score=120.16  Aligned_cols=83  Identities=22%  Similarity=0.261  Sum_probs=65.6

Q ss_pred             cEEEEcCCCCCCchHHHHHHHhccCC--CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKGVP--GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~vG--gvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      .+|||+|||...+ +.+|+++|..+|  .|.+++  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.+    
T Consensus         2 ~~l~V~nL~~~~t-~~~l~~~F~~~G~~~v~~v~--i~~~~~~g--~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g----   72 (90)
T 3p5t_L            2 IALYIGNLTWWTT-DEDLTEAVHSLGVNDILEIK--FFENRANG--QSKGFALVGVGSEASSKKLMDLLPKRELHG----   72 (90)
T ss_dssp             --CEEESCCTTCC-HHHHHHHHHTTTCCCCCCEE--EEECTTTC--CEEEEEEECC-CHHHHHHHHHHGGGSCSSS----
T ss_pred             eEEEEeCCCCCCC-HHHHHHHHHHhCCCceEEEE--EEecCCCC--ccCcEEEEEECCHHHHHHHHHHcCCCeeCC----
Confidence            4799999999865 889999999999  999998  56677787  999999999999999999999999999874    


Q ss_pred             ceeeeeeecCCCCC
Q 013598          273 KQIRCEMVNSSSSN  286 (439)
Q Consensus       273 K~ikcE~~~~~S~~  286 (439)
                      +.|+|+.+....+.
T Consensus        73 r~i~V~~~~~~~~~   86 (90)
T 3p5t_L           73 QNPVVTPSNKLEHH   86 (90)
T ss_dssp             CCCEECCC------
T ss_pred             EEEEEEECCCCccc
Confidence            56677776655443

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.63  E-value=1.1e-15  Score=114.30  Aligned_cols=84  Identities=23%  Similarity=0.233  Sum_probs=69.3

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      .+++.+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.+  
T Consensus         3 ~~~~~~l~v~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--   75 (87)
T 3bs9_A            3 LGSHFHVFVGDLSPEIT-TAAIAAAFAPFGRISDAR--VVKDMATG--KSKGYGFVSFFNKWDAENAIQQMGGQWLGG--   75 (87)
T ss_dssp             ---CEEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred             CCCceEEEEeCCCCCCC-HHHHHHHHHhcCCEeEEE--EEecCCCC--ccceEEEEEECCHHHHHHHHHHcCCCEECC--
Confidence            45778999999999865 889999999999999998  45566676  899999999999999999999999999874  


Q ss_pred             eeceeeeeeecCC
Q 013598          271 VQKQIRCEMVNSS  283 (439)
Q Consensus       271 VEK~ikcE~~~~~  283 (439)
                        +.++++.+..+
T Consensus        76 --~~l~v~~a~~k   86 (87)
T 3bs9_A           76 --RQIRTNWATRK   86 (87)
T ss_dssp             --EECEEEEEC--
T ss_pred             --eEEEEEecCCC
Confidence              56777776554

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.63  E-value=2.7e-15  Score=118.64  Aligned_cols=91  Identities=21%  Similarity=0.354  Sum_probs=76.8

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...+++-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.|+  .+||||||+|.+.++|.++|+.|||..|. 
T Consensus        20 ~~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~-   93 (115)
T 2cpz_A           20 KEGPEGANLFIYHLPQEFG-DQDLLQMFMPFGNVVSAK--VFIDKQTN--LSKCFGFVSYDNPVSAQAAIQSMNGFQIG-   93 (115)
T ss_dssp             CCCSTTCCEEEESCCSSCC-HHHHHHHHGGGSCCSEEE--EEECSSSC--SEEEEEEEECSSHHHHHHHHHHHTTCEET-
T ss_pred             cCCCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEECCCCC--CcCccEEEEECCHHHHHHHHHHcCCCEEC-
Confidence            4445778999999999865 889999999999999998  55666676  89999999999999999999999999987 


Q ss_pred             ceeeceeeeeeecCCCCCCC
Q 013598          269 GKVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~~~~  288 (439)
                         -+.|+|+.+.......+
T Consensus        94 ---g~~l~V~~a~~~~~~~~  110 (115)
T 2cpz_A           94 ---MKRLKVQLKRSKNDSKS  110 (115)
T ss_dssp             ---TEECEEECCCCSCCCCC
T ss_pred             ---CEEEEEEEcCCCCcCCC
Confidence               35678888776655444

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=2.6e-15  Score=115.79  Aligned_cols=90  Identities=19%  Similarity=0.262  Sum_probs=76.9

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ..++.-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.|+  .+||||||+|.+.++|.++|+.+||+.|.  
T Consensus         8 ~~~~~~~l~V~nLp~~~t-~~~l~~~f~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~--   80 (102)
T 2cqb_A            8 MATTKRVLYVGGLAEEVD-DKVLHAAFIPFGDITDIQ--IPLDYETE--KHRGFAFVEFELAEDAAAAIDNMNESELF--   80 (102)
T ss_dssp             SCCCCSCEEEESCCSSCC-HHHHHHHHTTTSCCCCEE--CCCCSSSC--CCSSEEEECCSSHHHHHHHHHHHTTEEET--
T ss_pred             cCCCCCEEEEeCCCCCCC-HHHHHHHhhccCCEEEEE--EEecCCCC--CcceEEEEEECCHHHHHHHHHHhCCCEEC--
Confidence            345788999999999865 889999999999999998  55666676  89999999999999999999999999987  


Q ss_pred             eeeceeeeeeecCCCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~~~  288 (439)
                        .+.|+++.+.......+
T Consensus        81 --g~~l~V~~a~~~~~~~~   97 (102)
T 2cqb_A           81 --GRTIRVNLAKPMRIKES   97 (102)
T ss_dssp             --TEEEEEEECCCCCCCCC
T ss_pred             --CcEEEEEeCCCCCCCCC
Confidence              46788888877665544

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=4.4e-15  Score=114.29  Aligned_cols=88  Identities=17%  Similarity=0.291  Sum_probs=74.5

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      ....-+|||+|||...+ +.+|+++|..+|.|..++  ...++.|+  .+||||||+|.+.++|.++|+ +||+.|.   
T Consensus         7 ~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~-~~~~~~~---   77 (99)
T 2dgs_A            7 GSKSNKIFVGGIPHNCG-ETELREYFKKFGVVTEVV--MIYDAEKQ--RPRGFGFITFEDEQSVDQAVN-MHFHDIM---   77 (99)
T ss_dssp             CSSCCEEEEESCCSSCC-HHHHHHHHSSSSCEEEEE--ECCCTTTC--SCCSEEEEEESSHHHHHHHHH-HCCCBSS---
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEeCCCCC--CCCceEEEEECCHHHHHHHHH-hCCCEEC---
Confidence            35678999999999865 889999999999999998  55666676  899999999999999999999 9999987   


Q ss_pred             eeceeeeeeecCCCCCCC
Q 013598          271 VQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       271 VEK~ikcE~~~~~S~~~~  288 (439)
                       -+.|+|+.+.......+
T Consensus        78 -g~~l~V~~a~~~~~~~~   94 (99)
T 2dgs_A           78 -GKKVEVKRAEPRDSKSS   94 (99)
T ss_dssp             -SCBCEEEECCCCCCCCC
T ss_pred             -CeEEEEEECCCCcccCC
Confidence             35678888876655444

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.62  E-value=9.7e-16  Score=135.66  Aligned_cols=130  Identities=13%  Similarity=0.170  Sum_probs=104.6

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCC-chH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKK-NIH  209 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~-ni~  209 (439)
                      .+++|||++.|.+.+.+.+++++|.+.. .++.+.+..+...+..             .....+.+|||+|||... + .
T Consensus       134 g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~-------------~~~~~~~~l~v~nlp~~~~~-~  199 (284)
T 3smz_A          134 GQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT-------------PALLHSRCLCVDRLPPGFND-V  199 (284)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC-------------TTTTSCSEEEEECCCTTCCC-H
T ss_pred             CccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC-------------cccCCccEEEEecCCcccCC-H
Confidence            3689999999999999999999999866 7777777655443221             123467889999999983 4 7


Q ss_pred             HHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCC
Q 013598          210 RDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSS  284 (439)
Q Consensus       210 kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~S  284 (439)
                      .+|+++|..+|.|.++++.  .++ +|  .+||||||+|.+.++|.++|+.+||..|. |   +.|+|..+....
T Consensus       200 ~~l~~~f~~~G~i~~v~i~--~~~-~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g---~~l~v~~a~~~~  265 (284)
T 3smz_A          200 DALCRALSAVHSPTFCQLA--CGQ-DG--QLKGFAVLEYETAEMAEEAQQQADGLSLG-G---SHLRVSFCAPGP  265 (284)
T ss_dssp             HHHHHHTCSSSCCSEEEEE--ECS-SC--CEEEEEEEECSSHHHHHHHHHHHTTCEET-T---EECEEEECCSSS
T ss_pred             HHHHHHhhCCCCeEEEEEE--ECC-CC--CcccEEEEEeCCHHHHHHHHHHhCCCccC-C---eEEEEEEecCCC
Confidence            8999999999999999833  343 44  88999999999999999999999999985 3   477887776543

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.62  E-value=2.2e-15  Score=114.76  Aligned_cols=87  Identities=18%  Similarity=0.262  Sum_probs=74.7

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEE-eeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINI-IPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisI-kpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ++++-+|||+|||...+ +.+|+.+|..+|.|.++ +  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.  
T Consensus         2 ~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~~~~--i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~--   74 (96)
T 1x5t_A            2 SSGSSGIFIGNLDPEID-EKLLYDTFSAFGVILQTPK--IMRDPDTG--NSKGYAFINFASFDASDAAIEAMNGQYLC--   74 (96)
T ss_dssp             CSCCCEEEEECCCTTCC-HHHHHHHHHTTSCBSSCCE--ECCCTTTC--SCCSEEEEEBSSHHHHHHHHHTTTTCEET--
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeeEEEE--EEEcCCCC--CcCeEEEEEECCHHHHHHHHHHcCCCEEC--
Confidence            45788999999999865 88999999999999988 7  45666676  89999999999999999999999999987  


Q ss_pred             eeeceeeeeeecCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~  286 (439)
                        -+.|+++.+....+.
T Consensus        75 --g~~l~v~~a~~~~~~   89 (96)
T 1x5t_A           75 --NRPITVSYAFKKDSK   89 (96)
T ss_dssp             --TEECEEEESCCCCCC
T ss_pred             --CEEEEEEEecccCCC
Confidence              367788887766544

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.62  E-value=2.4e-15  Score=116.54  Aligned_cols=90  Identities=23%  Similarity=0.330  Sum_probs=76.7

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ..+++-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.  
T Consensus        11 ~~~~~~~l~V~nlp~~~t-~~~l~~~f~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~--   83 (103)
T 2cq0_A           11 RADDNATIRVTNLSEDTR-ETDLQELFRPFGSISRIY--LAKDKTTG--QSKGFAFISFHRREDAARAIAGVSGFGYD--   83 (103)
T ss_dssp             CCSSSEEEEEESCCTTCC-HHHHHTTSTTTCCEEEEE--EEECSSSC--SEEEEEEEEESSHHHHHHHHHHTTTCEET--
T ss_pred             CCCCCCEEEEeCCCCCCC-HHHHHHHHHhCCCeEEEE--EeecCCCC--ceeeEEEEEECCHHHHHHHHHHcCCCeeC--
Confidence            346789999999999865 889999999999999998  55666676  89999999999999999999999999987  


Q ss_pred             eeeceeeeeeecCCCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~~~  288 (439)
                        .+.|+|+.+.......+
T Consensus        84 --g~~l~v~~a~~~~~~~~  100 (103)
T 2cq0_A           84 --HLILNVEWAKPSTNSGP  100 (103)
T ss_dssp             --TEECEEEESSCCCCSCC
T ss_pred             --CcEEEEEECCCCCCCCC
Confidence              35788888877655443

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.62  E-value=3.4e-15  Score=115.86  Aligned_cols=94  Identities=20%  Similarity=0.305  Sum_probs=76.8

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...++..+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||..+..
T Consensus         8 ~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~   82 (106)
T 2dgp_A            8 MKDHDAIKLFIGQIPRNLD-EKDLKPLFEEFGKIYELT--VLKDRFTG--MHKGCAFLTYCERESALKAQSALHEQKTLP   82 (106)
T ss_dssp             CCCTTCEEEEEESCCTTCC-HHHHHHHHHHHSCCCEEE--CCCCSSSC--SCCSEEEEEESSHHHHHHHHHHHTTTCCCT
T ss_pred             CCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeeEEE--EEecCCCC--CcceEEEEEECCHHHHHHHHHHhcCCcccC
Confidence            3445788999999999865 889999999999999998  56677686  899999999999999999999999998632


Q ss_pred             ceeeceeeeeeecCCCCCCC
Q 013598          269 GKVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~~~~  288 (439)
                      | -.+.|+++.+.......+
T Consensus        83 ~-~g~~l~v~~a~~~~~~~~  101 (106)
T 2dgp_A           83 G-MNRPIQVKPADSESRGGS  101 (106)
T ss_dssp             T-CSSCCEEEECCCCSCCCC
T ss_pred             C-CCceEEEEECCcccccCC
Confidence            1 146777887776654433

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.62  E-value=1.9e-15  Score=133.78  Aligned_cols=122  Identities=13%  Similarity=0.232  Sum_probs=101.2

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR  210 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~k  210 (439)
                      .+++|||++.|.+.+.++++++.|.+.. .++.+.+..                      .+.+.+|||+|||...+ ..
T Consensus        54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~----------------------~~~~~~l~v~nlp~~~t-~~  110 (284)
T 3smz_A           54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL----------------------QPTDALLCVANLPPSLT-QQ  110 (284)
T ss_dssp             ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE----------------------CCCSCEEEEESCCTTCC-HH
T ss_pred             ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe----------------------cCCCCEEEEcCCCCcCC-HH
Confidence            6899999999999999999999988766 555555542                      22346999999999865 88


Q ss_pred             HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCC
Q 013598          211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSS  284 (439)
Q Consensus       211 DL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~S  284 (439)
                      +|+.+|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.+||..|.+    +.++++.+....
T Consensus       111 ~l~~~f~~~G~i~~~~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~~~~~~g----~~i~v~~a~~~~  176 (284)
T 3smz_A          111 QFEELVRPFGSLERCF--LVYSERTG--QSKGYGFAEYMKKDSAARAKSDLLGKPLGP----RTLYVHWTDAGQ  176 (284)
T ss_dssp             HHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEECCGGG
T ss_pred             HHHHHHHhcCCeeEEE--EEeeCCCC--ccceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEEEEECCCCC
Confidence            9999999999999998  45666676  899999999999999999999999999863    466777665543

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.62  E-value=6.3e-15  Score=114.15  Aligned_cols=90  Identities=17%  Similarity=0.306  Sum_probs=75.6

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccC-CCCCCCcccceEEEeecCHHHHHHHHHHh-CCceec
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGN-KKTKDPICKGFAFVDFESEDYATRFVQLF-SRQIIA  267 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~n-rKTgDp~CKGFAFVTf~seEdA~rfIEk~-NGq~~~  267 (439)
                      ....+.+|||+|||...+ +.+|+.+|..+|.|.+|+  ...+ +.||  .+||||||+|.+.++|.++|+.+ ||+.|.
T Consensus        11 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~~~~~~~   85 (107)
T 2cph_A           11 KKQTTSKILVRNIPFQAN-QREIRELFSTFGELKTVR--LPKKMTGTG--AHRGFGFVDFITKQDAKKAFNALCHSTHLY   85 (107)
T ss_dssp             CSSCCCCEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--CCCCCSSSC--SSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred             cCCCCCEEEEeCCCCcCC-HHHHHHHHHccCCeEEEE--EecCCCCCC--CcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence            345778999999999865 889999999999999998  4455 4575  89999999999999999999999 999987


Q ss_pred             cceeeceeeeeeecCCCCCCC
Q 013598          268 FGKVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       268 fgKVEK~ikcE~~~~~S~~~~  288 (439)
                          -+.|+++.+........
T Consensus        86 ----g~~l~v~~a~~~~~~~~  102 (107)
T 2cph_A           86 ----GRRLVLEWADSEVTVQS  102 (107)
T ss_dssp             ----SCBCEEEECCCCCCCCC
T ss_pred             ----CCEEEEEeCCCCCCCCC
Confidence                35788888877655443

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.61  E-value=7.2e-15  Score=113.85  Aligned_cols=88  Identities=20%  Similarity=0.241  Sum_probs=75.1

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ..+..-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.|+  .+||||||+|.+.++|.++|+.|||..|.+ 
T Consensus        11 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-   84 (105)
T 1x5u_A           11 ERNQDATVYVGGLDEKVS-EPLLWELFLQAGPVVNTH--MPKDRVTG--QHQGYGFVEFLSEEDADYAIKIMDMIKLYG-   84 (105)
T ss_dssp             CCCTTTEEEEECCCTTCC-HHHHHHHHHTTSCEEEEE--CCBCSSSC--SBCSCEEEEESSHHHHHHHHHHSSSCBCSS-
T ss_pred             cCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--cCCcEEEEEECCHHHHHHHHHHhCCCeECC-
Confidence            345778999999999865 889999999999999998  55666676  899999999999999999999999999873 


Q ss_pred             eeeceeeeeeecCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~  286 (439)
                         +.|+++.+......
T Consensus        85 ---~~l~v~~a~~~~~~   98 (105)
T 1x5u_A           85 ---KPIRVNKASAHNKN   98 (105)
T ss_dssp             ---CBCEEEETTTTSCC
T ss_pred             ---eEEEEEECCCCCcC
Confidence               67788887766544

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.61  E-value=4.1e-15  Score=117.67  Aligned_cols=82  Identities=24%  Similarity=0.401  Sum_probs=70.1

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...+++-+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||..|.+
T Consensus        35 ~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~~~--i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g  109 (118)
T 2khc_A           35 IEGPEGCNLFIYHLPQEFT-DTDLASTFLPFGNVISAK--VFIDKQTS--LSKCFGFVSFDNPDSAQVAIKAMNGFQVGT  109 (118)
T ss_dssp             CCCCCSEEEEEECSCTTCC-HHHHHHHTTTSCEEEEEE--ECCCSSSS--CCCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred             CCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEeCCCCC--CcCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence            4456789999999999865 889999999999999998  55666676  899999999999999999999999999874


Q ss_pred             ceeeceeeeee
Q 013598          269 GKVQKQIRCEM  279 (439)
Q Consensus       269 gKVEK~ikcE~  279 (439)
                          +.|+|+.
T Consensus       110 ----~~l~V~~  116 (118)
T 2khc_A          110 ----KRLKVQL  116 (118)
T ss_dssp             ----EECCEEE
T ss_pred             ----EEEEEEe
Confidence                3455554

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.61  E-value=4.8e-15  Score=116.51  Aligned_cols=88  Identities=18%  Similarity=0.148  Sum_probs=74.5

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCee--------EEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhC
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGII--------NIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFS  262 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvi--------sIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~N  262 (439)
                      ..++-+|||+|||...+ +.+|+++|..+|.|.        .|+  ...++.||  .+||||||+|.+.++|.++|+.||
T Consensus        12 ~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~~~~~~~~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~   86 (113)
T 2cpe_A           12 DSDNSAIYVQGLNDSVT-LDDLADFFKQCGVVKMNKRTGQPMIH--IYLDKETG--KPKGDATVSYEDPPTAKAAVEWFD   86 (113)
T ss_dssp             CCCCCEEEEECCCTTCC-HHHHHHHHTTTSCBCBCSSSCCBSEE--CCBCTTTC--SBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEcCCCCCCC-HHHHHHHHHhcCCEeEccccCccCEE--EEEeCCCC--CeeeEEEEEECCHHHHHHHHHHcC
Confidence            45678999999999865 889999999999998        476  55677786  899999999999999999999999


Q ss_pred             CceeccceeeceeeeeeecCCCCCC
Q 013598          263 RQIIAFGKVQKQIRCEMVNSSSSNS  287 (439)
Q Consensus       263 Gq~~~fgKVEK~ikcE~~~~~S~~~  287 (439)
                      |+.|.+    +.|+++.+.......
T Consensus        87 g~~~~g----~~l~V~~a~~~~~~~  107 (113)
T 2cpe_A           87 GKDFQG----SKLKVSLARKKPPMN  107 (113)
T ss_dssp             TCEETT----EECEEECSSCCCCST
T ss_pred             CCccCC----CEEEEEECCCCCCCC
Confidence            999873    567888877665543

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.61  E-value=5.1e-15  Score=111.94  Aligned_cols=88  Identities=18%  Similarity=0.252  Sum_probs=74.1

Q ss_pred             CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       188 ~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      +...+++-+|||+|||...+ +.+|+.+|..+|.|.+|++..    .||  .+||||||+|.+.++|.++|+.+||..|.
T Consensus         2 ~~~~~~~~~l~V~nlp~~~t-~~~l~~~f~~~G~v~~~~i~~----~~g--~~~g~afV~f~~~~~a~~a~~~l~g~~~~   74 (92)
T 2dgv_A            2 SSGSSGACQIFVRNLPFDFT-WKMLKDKFNECGHVLYADIKM----ENG--KSKGCGVVKFESPEVAERACRMMNGMKLS   74 (92)
T ss_dssp             CCSSSSCCEEEECSCCTTCC-HHHHHHHHHTTSCEEEEEEEE----SSS--CEEEEEEEEESSHHHHHHHHHHHTTCCBT
T ss_pred             CCCCCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEEEEc----cCC--CcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            34567889999999999865 889999999999999998543    365  88999999999999999999999999977


Q ss_pred             cceeeceeeeeeecCCCCC
Q 013598          268 FGKVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       268 fgKVEK~ikcE~~~~~S~~  286 (439)
                          -+.|+|+.+......
T Consensus        75 ----g~~l~v~~a~~~~~~   89 (92)
T 2dgv_A           75 ----GREIDVRIDRNASGP   89 (92)
T ss_dssp             ----TBCCCCEECSCCSSC
T ss_pred             ----CcEEEEEEcCCCCCC
Confidence                357788887765543

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.61  E-value=1.2e-15  Score=118.45  Aligned_cols=83  Identities=22%  Similarity=0.326  Sum_probs=69.1

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCC-CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh-CCceecccee
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVP-GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF-SRQIIAFGKV  271 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vG-gvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~-NGq~~~fgKV  271 (439)
                      +.+|||+|||.+.+ +.||+++|..+| .|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+ ||..|. |  
T Consensus         1 S~~i~v~nLp~~~t-e~~l~~~F~~~G~~v~~v~--i~~d~~t~--~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~-g--   72 (91)
T 2lxi_A            1 SNIVMLRMLPQAAT-EDDIRGQLQSHGVQAREVR--LMRNKSSG--QSRGFAFVEFSHLQDATRWMEANQHSLNIL-G--   72 (91)
T ss_dssp             CCEEEEETCCSSCC-HHHHHHHHHHHTCCCSBCC--SSSCSSSC--CCSSEEEEECSSHHHHHHHHHTTTTEEEET-T--
T ss_pred             CCEEEEeCCCCCCC-HHHHHHHHHHhCCEeEEEE--EEecCCCC--CcCceEEEEecCHHHHHHHHHhcCCCeEEC-C--
Confidence            35899999999865 889999999999 798998  66778887  99999999999999999999986 455555 3  


Q ss_pred             eceeeeeeecCCCC
Q 013598          272 QKQIRCEMVNSSSS  285 (439)
Q Consensus       272 EK~ikcE~~~~~S~  285 (439)
                       +.|+|+.+++++.
T Consensus        73 -r~i~V~~a~~~~~   85 (91)
T 2lxi_A           73 -QKVSMHYSDPKPK   85 (91)
T ss_dssp             -EEEEEECCCSCCC
T ss_pred             -EEEEEEEcCCCCC
Confidence             5778887765543

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.61  E-value=9.2e-15  Score=113.91  Aligned_cols=90  Identities=19%  Similarity=0.271  Sum_probs=75.4

Q ss_pred             CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhC-----
Q 013598          188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFS-----  262 (439)
Q Consensus       188 ~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~N-----  262 (439)
                      +....++-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+|     
T Consensus         9 ~~~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~~~~~~~~   83 (111)
T 1x4h_A            9 PSDVTEGKTVFIRNLSFDSE-EEALGEVLQQFGDLKYVR--VVLHPDTE--HSKGCAFAQFMTQEAAQKCLAAASLEAEG   83 (111)
T ss_dssp             CCCCCCCCCEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--CCBCSSSC--CBCSEEEEEESSHHHHHHHHHHHCTTTTT
T ss_pred             CCcCCCCCEEEEECCCCCCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--CCccEEEEEECCHHHHHHHHHHhcccccc
Confidence            34455788999999999865 889999999999999998  55666686  899999999999999999999999     


Q ss_pred             -CceeccceeeceeeeeeecCCCCC
Q 013598          263 -RQIIAFGKVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       263 -Gq~~~fgKVEK~ikcE~~~~~S~~  286 (439)
                       |..|.+    +.|+++.+..+...
T Consensus        84 ~~~~~~g----~~l~v~~a~~~~~~  104 (111)
T 1x4h_A           84 GGLKLDG----RQLKVDLAVTRDEA  104 (111)
T ss_dssp             CCEESSS----CEEEEECCCCCCCC
T ss_pred             CCcEEcC----EEEEEEECCCCccC
Confidence             998863    56777777665443

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.60  E-value=2.8e-15  Score=114.92  Aligned_cols=91  Identities=15%  Similarity=0.256  Sum_probs=74.0

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCC-CCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNK-KTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nr-KTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ++++-+|||+|||...+ +.+|+++|..+|.|.+|++....+. .|+  .+||||||+|.+.++|.++|+.|||+.|.  
T Consensus         2 s~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~~~gt~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~--   76 (98)
T 2cpf_A            2 SSGSSGLFIKNLNFSTT-EETLKGVFSKVGAIKSCTISKKKNKAGVL--LSMGFGFVEYKKPEQAQKALKQLQGHTVD--   76 (98)
T ss_dssp             CCCCCCEEEESCCTTCC-HHHHHHHHHTTSCEEEEEEEEEECTTCCE--EEEEEEEEEESSHHHHHHHHHHSTTCEET--
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEEEecCCCCCCc--CcccEEEEEECCHHHHHHHHHHhCCCeeC--
Confidence            35778999999999865 8899999999999999985443321 143  88999999999999999999999999987  


Q ss_pred             eeeceeeeeeecCCCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~~~  288 (439)
                        -+.|+++.+.......+
T Consensus        77 --g~~l~V~~a~~~~~~~~   93 (98)
T 2cpf_A           77 --GHKLEVRISERATKPAS   93 (98)
T ss_dssp             --TEECEEECSSCSSCCCC
T ss_pred             --CeEEEEEEccCCCCCCC
Confidence              35677887776655444

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.60  E-value=4.7e-15  Score=112.39  Aligned_cols=85  Identities=21%  Similarity=0.280  Sum_probs=71.8

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...+++-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.|+  .+||||||+|.+.++|.++|+.+||..|.+
T Consensus        10 ~~~~~~~~l~v~nlp~~~t-~~~l~~~f~~~G~v~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g   84 (95)
T 2cqc_A           10 ANPDPNCCLGVFGLSLYTT-ERDLREVFSKYGPIADVS--IVYDQQSR--RSRGFAFVYFENVDDAKEAKERANGMELDG   84 (95)
T ss_dssp             CSCCGGGCEEEESCCSSCC-HHHHHHHHHTTSCEEEEE--EEECSSSS--SEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred             CCCCCCCEEEEECCCCCCC-HHHHHHHHHhcCCeeEEE--EEEcCCCC--CcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            3346788999999999865 889999999999999998  45566676  889999999999999999999999999873


Q ss_pred             ceeeceeeeeeecC
Q 013598          269 GKVQKQIRCEMVNS  282 (439)
Q Consensus       269 gKVEK~ikcE~~~~  282 (439)
                          +.|+++.+.+
T Consensus        85 ----~~l~v~~a~~   94 (95)
T 2cqc_A           85 ----RRIRVSGPSS   94 (95)
T ss_dssp             ----EEEEEECCSC
T ss_pred             ----EEEEEEecCC
Confidence                5667766554

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.60  E-value=4.1e-15  Score=110.21  Aligned_cols=81  Identities=21%  Similarity=0.288  Sum_probs=69.3

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK  273 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK  273 (439)
                      +.+|||+|||...+ +.+|+++|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.+||..|.+    +
T Consensus         1 t~~l~V~nlp~~~t-~~~l~~~f~~~G~i~~~~--i~~~~~~~--~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~   71 (83)
T 3md1_A            1 TFNLFVGDLNVNVD-DETLRNAFKDFPSYLSGH--VMWDMQTG--SSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----R   71 (83)
T ss_dssp             CEEEEEECCCTTCC-HHHHHHHHTTSTTEEEEE--EEECTTTC--CEEEEEEEEESCHHHHHHHHHHHTTCEETT----E
T ss_pred             CeEEEEeCCCCCCC-HHHHHHHHHhcCCeeEEE--EEEcCCCC--CccceEEEEECCHHHHHHHHHHhcCCeeCC----c
Confidence            35899999999865 889999999999999998  45566676  899999999999999999999999999873    4


Q ss_pred             eeeeeeecCC
Q 013598          274 QIRCEMVNSS  283 (439)
Q Consensus       274 ~ikcE~~~~~  283 (439)
                      .++++.+..+
T Consensus        72 ~l~v~~a~~~   81 (83)
T 3md1_A           72 PLRINWAAKL   81 (83)
T ss_dssp             ECEEEECCCC
T ss_pred             EEEEEecCcC
Confidence            6677766543

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.60  E-value=2.6e-15  Score=116.51  Aligned_cols=86  Identities=16%  Similarity=0.215  Sum_probs=73.0

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ....++-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus        18 ~~~~~~~~l~V~nlp~~~t-~~~l~~~f~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   92 (106)
T 1p27_B           18 QRSVEGWILFVTGVHEEAT-EEDIHDKFAEYGEIKNIH--LNLDRRTG--YLKGYTLVEYETYKEAQAAMEGLNGQDLMG   92 (106)
T ss_dssp             CCBTTBEEEEEECCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTS--SEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred             CCCCCCCEEEEeCCCCCCC-HHHHHHHHhccCCeEEEE--EEecCCCC--ceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence            4456788999999999865 889999999999999998  55666686  899999999999999999999999999874


Q ss_pred             ceeeceeeeeeecCC
Q 013598          269 GKVQKQIRCEMVNSS  283 (439)
Q Consensus       269 gKVEK~ikcE~~~~~  283 (439)
                          +.++|+.+..+
T Consensus        93 ----~~l~V~~a~~~  103 (106)
T 1p27_B           93 ----QPISVDWCFVR  103 (106)
T ss_dssp             ----SBCEEEESEES
T ss_pred             ----cEEEEEeecCC
Confidence                55667666543

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=5.7e-15  Score=112.08  Aligned_cols=83  Identities=23%  Similarity=0.319  Sum_probs=70.4

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...++.-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||..|.+
T Consensus        11 ~~~~~~~~l~V~nlp~~~t-~~~l~~~f~~~G~v~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g   85 (94)
T 2e5h_A           11 GLAPSKSTVYVSNLPFSLT-NNDLYRIFSKYGKVVKVT--IMKDKDTR--KSKGVAFILFLDKDSAQNCTRAINNKQLFG   85 (94)
T ss_dssp             SCCCCTTSEEEESCCTTSC-HHHHHHHTTTTSCEEEEE--ECCCSSSC--CCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred             CCCCCCCEEEEECCCCCCC-HHHHHHHHHhcCCeEEEE--EEeCCCCC--CcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence            3446778999999999865 889999999999999998  55666676  889999999999999999999999999874


Q ss_pred             ceeeceeeeeee
Q 013598          269 GKVQKQIRCEMV  280 (439)
Q Consensus       269 gKVEK~ikcE~~  280 (439)
                          +.++|+.+
T Consensus        86 ----~~l~v~~a   93 (94)
T 2e5h_A           86 ----RVIKASIA   93 (94)
T ss_dssp             ----EEEEEEEC
T ss_pred             ----cEEEEEec
Confidence                45566554

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.60  E-value=1.7e-15  Score=135.13  Aligned_cols=124  Identities=16%  Similarity=0.220  Sum_probs=99.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR  210 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~k  210 (439)
                      .+++|||++.|.+...+++++++|.+.. .++.+.+..+.                      ++.+|||+|||...+ ..
T Consensus        55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~----------------------~~~~l~v~nl~~~~t-~~  111 (261)
T 3sde_A           55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT----------------------HGAALTVKNLSPVVS-NE  111 (261)
T ss_dssp             ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC----------------------CSSEEEEESCCTTCC-HH
T ss_pred             eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc----------------------cCCcccccCCCCCCC-HH
Confidence            3679999999999999999999998766 56666555332                      256899999999865 88


Q ss_pred             HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCC
Q 013598          211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSS  283 (439)
Q Consensus       211 DL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~  283 (439)
                      +|+++|..+|.|.+|++.  .+ +||  .+||||||+|.+.++|.++|+.+||..+..+..-+++.++.+...
T Consensus       112 ~l~~~F~~~G~i~~v~i~--~~-~~g--~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~  179 (261)
T 3sde_A          112 LLEQAFSQFGPVEKAVVV--VD-DRG--RATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF  179 (261)
T ss_dssp             HHHHHHGGGSCEEEEEEE--EE-TTS--CEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred             HHHHHHHhcCCeEEEEee--eC-CCC--CcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence            999999999999999844  34 365  899999999999999999999997666655334567777776654

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.59  E-value=9.3e-15  Score=113.54  Aligned_cols=88  Identities=18%  Similarity=0.370  Sum_probs=73.7

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ....+.-+|||+|||..++ +.+|+++|..+| |.+|+  ...++.||  .+||||||+|.+.++|.++| .+||..|. 
T Consensus        10 ~~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~g-i~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~-~l~g~~~~-   81 (103)
T 2dng_A           10 LPTEPPYTAYVGNLPFNTV-QGDIDAIFKDLS-IRSVR--LVRDKDTD--KFKGFCYVEFDEVDSLKEAL-TYDGALLG-   81 (103)
T ss_dssp             CCSSSCEEEEEESCCTTCC-HHHHHHHTTTSC-EEEEE--EEECSSSC--SEEEEEEEEESSHHHHHHHG-GGTTCEET-
T ss_pred             CCCCCCeEEEEeCCCCCCC-HHHHHHHHHhCC-ceEEE--EeecCCCC--ccceEEEEEECCHHHHHHHH-hhCCCeEC-
Confidence            3445678999999999865 889999999995 99998  55666686  89999999999999999999 89999987 


Q ss_pred             ceeeceeeeeeecCCCCCC
Q 013598          269 GKVQKQIRCEMVNSSSSNS  287 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~~~  287 (439)
                         -+.|+|+.+.......
T Consensus        82 ---g~~l~V~~a~~~~~~~   97 (103)
T 2dng_A           82 ---DRSLRVDIAEGRKQDK   97 (103)
T ss_dssp             ---TEECEEEECCCCCCCC
T ss_pred             ---CeEEEEEEecCCCCCC
Confidence               3578888877665443

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=8.9e-15  Score=112.77  Aligned_cols=87  Identities=21%  Similarity=0.264  Sum_probs=73.3

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ....+.-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++ ||  .+||||||+|.+.++|.++|+.+||..|.+
T Consensus        12 ~~~~~~~~l~v~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~-~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   85 (100)
T 2do4_A           12 STSLEKHKLFISGLPFSCT-KEELEEICKAHGTVKDLR--LVTNR-AG--KPKGLAYVEYENESQASQAVMKMDGMTIKE   85 (100)
T ss_dssp             SSCCCCSCEEEESCCTTCC-HHHHHHHHTTTSCEEEEE--EEECT-TS--CEEEEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred             ccCCCCCEEEEeCCCCCCC-HHHHHHHHHhCCCeEEEE--EEECC-CC--CEEeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            4456778999999999865 889999999999999998  44454 65  899999999999999999999999999873


Q ss_pred             ceeeceeeeeeecCCCC
Q 013598          269 GKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~  285 (439)
                          +.|+++.+....+
T Consensus        86 ----~~l~v~~a~~~~~   98 (100)
T 2do4_A           86 ----NIIKVAISNSGPS   98 (100)
T ss_dssp             ----CEEEEEECCCCSC
T ss_pred             ----EEEEEEECCCCCC
Confidence                5678888776543

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.59  E-value=4.4e-15  Score=116.22  Aligned_cols=88  Identities=17%  Similarity=0.264  Sum_probs=74.1

Q ss_pred             CCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          187 EPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       187 ~~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      .+....++-+|||+|||...+ +.+|+.+|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.+||..|
T Consensus        19 ~~~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~   93 (110)
T 1oo0_B           19 GPQRSVEGWILFVTSIHEEAQ-EDEIQEKFCDYGEIKNIH--LNLDRRTG--FSKGYALVEYETHKQALAAKEALNGAEI   93 (110)
T ss_dssp             CBCCBTTBEEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--CCBCTTTS--SBCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred             CCCCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEecCCCC--CcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence            334556789999999999865 889999999999999998  55666676  8999999999999999999999999998


Q ss_pred             ccceeeceeeeeeecCC
Q 013598          267 AFGKVQKQIRCEMVNSS  283 (439)
Q Consensus       267 ~fgKVEK~ikcE~~~~~  283 (439)
                      .+    +.++++.+..+
T Consensus        94 ~g----~~l~V~~a~~~  106 (110)
T 1oo0_B           94 MG----QTIQVDWCFVK  106 (110)
T ss_dssp             TT----EECEEEESEES
T ss_pred             CC----cEEEEEEcccC
Confidence            74    45666666543

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.59  E-value=1.1e-14  Score=112.74  Aligned_cols=90  Identities=16%  Similarity=0.145  Sum_probs=75.0

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ..+++-+|||+|||...+ +.+|+.+|..+|.|.+|++  ..++ ||  .+||||||+|.+.++|.++|+.+||..|.+|
T Consensus        11 ~~~~~~~l~v~nLp~~~t-~~~l~~~F~~~G~i~~v~i--~~~~-~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg   84 (105)
T 2dnh_A           11 RGGRDRKLFVGMLNKQQS-EEDVLRLFQPFGVIDECTV--LRGP-DG--SSKGCAFVKFSSHTEAQAAIHALHGSQTMPG   84 (105)
T ss_dssp             SCCCCCEEEEESCCTTCC-HHHHHHHHTTTSCEEEEEE--EECS-SS--CEEEEEEEEESSHHHHHHHHHHHSSCCCCTT
T ss_pred             cCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEE--EECC-CC--CcCcEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence            345689999999999865 8899999999999999984  4444 54  8999999999999999999999999998764


Q ss_pred             eeeceeeeeeecCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~  286 (439)
                       -.+.|+++.+......
T Consensus        85 -~~~~l~V~~a~~~~~~  100 (105)
T 2dnh_A           85 -ASSSLVVKFADTDKES  100 (105)
T ss_dssp             -CSSCCEEEESCSSCCC
T ss_pred             -CCccEEEEECccCccc
Confidence             1267888888766543

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.59  E-value=4.8e-15  Score=110.31  Aligned_cols=81  Identities=21%  Similarity=0.295  Sum_probs=69.1

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      .++.-+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||..|.+  
T Consensus         4 ~~~~~~l~V~nl~~~~~-~~~l~~~f~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--   76 (85)
T 3mdf_A            4 ATTKRVLYVGGLAEEVD-DKVLHAAFIPFGDITDIQ--IPLDYETE--KHRGFAFVEFELAEDAAAAIDNMNESELFG--   76 (85)
T ss_dssp             CCCSSEEEEECCCTTCC-HHHHHHHHGGGSCEEEEE--CCEETTTT--EECSEEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred             CCCCCEEEEECCCCCCC-HHHHHHHHhccCCEEEEE--EEECCCCC--ccccEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence            45778999999999865 889999999999999998  45566676  899999999999999999999999999874  


Q ss_pred             eeceeeeeee
Q 013598          271 VQKQIRCEMV  280 (439)
Q Consensus       271 VEK~ikcE~~  280 (439)
                        +.++|+.+
T Consensus        77 --~~l~v~~a   84 (85)
T 3mdf_A           77 --RTIRVNLA   84 (85)
T ss_dssp             --EECEEEEC
T ss_pred             --cEEEEEEc
Confidence              45555543

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.59  E-value=4.9e-15  Score=114.36  Aligned_cols=82  Identities=17%  Similarity=0.179  Sum_probs=70.0

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeE--------EeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIIN--------IIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF  261 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvis--------IkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~  261 (439)
                      ..+...+|||+|||...+ +.+|+++|..+|.|.+        |+  ...++.||  .+||||||+|.+.++|.++|+.+
T Consensus         9 ~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~~~~~~~~~v~--i~~~~~~g--~~~G~afV~f~~~~~a~~Ai~~l   83 (99)
T 2la6_A            9 SHSDNNTIFVQGLGENVT-IESVADYFKQIGIIKTNKKTGQPMIN--LYTDRETG--KLKGEATVSFDDPPSAKAAIDWF   83 (99)
T ss_dssp             SCCCCSEEEEECCCSSCC-HHHHHHHHTTTSCBCEETTTTEESEE--EEECTTTC--SEEEEEEEEBSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCCCC-HHHHHHHHHHhCCEeeccccccccEE--EEecCCCC--CeeeEEEEEECCHHHHHHHHHHh
Confidence            445788999999999865 8899999999999988        76  56677786  89999999999999999999999


Q ss_pred             CCceeccceeeceeeeeee
Q 013598          262 SRQIIAFGKVQKQIRCEMV  280 (439)
Q Consensus       262 NGq~~~fgKVEK~ikcE~~  280 (439)
                      ||..|.+    +.|+++.+
T Consensus        84 ~g~~~~g----~~l~V~~A   98 (99)
T 2la6_A           84 DGKEFSG----NPIKVSFA   98 (99)
T ss_dssp             TTCBSSS----SBCEEEEC
T ss_pred             CCCEeCC----cEEEEEec
Confidence            9999874    45555554

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.59  E-value=7.3e-15  Score=112.85  Aligned_cols=83  Identities=18%  Similarity=0.295  Sum_probs=72.2

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK  273 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK  273 (439)
                      +-+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||..|.+    +
T Consensus         2 ~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~   72 (96)
T 2x1f_A            2 SRVVYLGSIPYDQT-EEQILDLCSNVGPVINLK--MMFDPQTG--RSKGYAFIEFRDLESSASAVRNLNGYQLGS----R   72 (96)
T ss_dssp             CSEEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--CCBCTTTC--CBCSEEEEEESSHHHHHHHHHHHTTCEETT----E
T ss_pred             CcEEEEECCCCCCC-HHHHHHHHHhcCCEEEEE--EEeCCCCC--ccceEEEEEECCHHHHHHHHHHhCCCeECC----e
Confidence            46899999999865 889999999999999998  55666676  899999999999999999999999999874    6


Q ss_pred             eeeeeeecCCCC
Q 013598          274 QIRCEMVNSSSS  285 (439)
Q Consensus       274 ~ikcE~~~~~S~  285 (439)
                      .++|+.+...+.
T Consensus        73 ~l~V~~a~~~~~   84 (96)
T 2x1f_A           73 FLKCGYSSNSDI   84 (96)
T ss_dssp             ECEEEECSCSSG
T ss_pred             EEEEEEcCCCCC
Confidence            788888776554

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.59  E-value=1.9e-14  Score=115.36  Aligned_cols=89  Identities=16%  Similarity=0.173  Sum_probs=74.9

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ....+.+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++ ||  .+||||||+|.+.++|.++|+.+||..|.+ 
T Consensus        31 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~v~~v~--i~~~~-~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-  103 (124)
T 2kt5_A           31 GVETGAKLLVSNLDFGVS-DADIQELFAEFGTLKKAA--VDYDR-SG--RSLGTADVHFERRADALKAMKQYKGVPLDG-  103 (124)
T ss_dssp             CCSSCEEEEEESCCSSCC-HHHHHHHHHTTSCCSEEE--EECCS-SS--SCCSEEEEEESSHHHHHHHHHHHTTEESSS-
T ss_pred             CCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeeEEE--EEECC-CC--CEeeEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence            345788999999999865 889999999999999998  44555 65  899999999999999999999999999863 


Q ss_pred             eeeceeeeeeecCCCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~~~  288 (439)
                         +.|+++.+.......+
T Consensus       104 ---~~l~V~~a~~~~~~~~  119 (124)
T 2kt5_A          104 ---RPMDIQLVASQIDLEH  119 (124)
T ss_dssp             ---CEEEEEEECCTTCCCC
T ss_pred             ---cEEEEEEeCCCCCCCC
Confidence               6788888876555444

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.58  E-value=7.9e-15  Score=129.74  Aligned_cols=76  Identities=24%  Similarity=0.335  Sum_probs=64.0

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      +.+.+|||+|||...+ +.+|+.+|..+|.|.+|++.  .++       ||||||.|.+.++|.++|+.+||..|..|  
T Consensus       205 ~~~~~l~v~nl~~~~~-~~~l~~~F~~~G~i~~v~~~--~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~~g--  272 (282)
T 3pgw_A          205 PPNHILFLTNLPEETN-ELMLSMLFNQFPGFKEVRLV--PGR-------HDIAFVEFDNEVQAGAARDALQGFKITQN--  272 (282)
T ss_pred             CCCCEEEEeCCCCcCC-HHHHHHHHHhcCCeEEEEEe--cCC-------CcEEEEEeCCHHHHHHHHHHcCCcEeCCC--
Confidence            4678899999999865 88999999999999999843  332       69999999999999999999999998844  


Q ss_pred             eceeeeeee
Q 013598          272 QKQIRCEMV  280 (439)
Q Consensus       272 EK~ikcE~~  280 (439)
                       +.|+|+.+
T Consensus       273 -~~l~v~~a  280 (282)
T 3pgw_A          273 -NAMKISFA  280 (282)
T ss_pred             -CEEEEEEe
Confidence             46666654

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.58  E-value=5.6e-15  Score=130.13  Aligned_cols=128  Identities=10%  Similarity=0.086  Sum_probs=98.0

Q ss_pred             CCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCC-CC--CCC-------------CCCCC-----CCCCC
Q 013598          134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKP-SP--KKD-------------EPKKK-----EPEDM  191 (439)
Q Consensus       134 PrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~-n~--~k~-------------~~akk-----~~e~~  191 (439)
                      .||||++.+.+.+.+++++++|.+.. .++.+.+.+++.....+ .+  ...             .+-+.     .....
T Consensus        41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  120 (205)
T 3tyt_A           41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ  120 (205)
T ss_dssp             STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCC
T ss_pred             CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccC
Confidence            58999999999999999999999987 88899888776543211 10  000             00000     01123


Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCe--eEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGI--INIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgv--isIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      +++-+|||+|||...+ +.+|+++|..+|.|  .+++  ...++  +  .++|||||.|.+.++|.++|+.+||+.|.+
T Consensus       121 ~p~~~l~v~NLp~~~t-~~~L~~~F~~~G~v~~~~v~--~~~~~--~--~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g  192 (205)
T 3tyt_A          121 HPSNVLHFFNAPLEVT-EENFFEICDELGVKRPTSVK--VFSGK--S--ERSSSGLLEWDSKSDALETLGFLNHYQMKN  192 (205)
T ss_dssp             CCCSEEEEEEECTTCC-HHHHHHHHHHHTCCCCSEEE--ECSCC--S--SSSEEEEEECSSHHHHHHHHHHHTTCEECC
T ss_pred             CCcceEEEeCCCCCCC-HHHHHHHHHhcCCcceEEEE--EEcCC--C--CCceEEEEEeCCHHHHHHHHHHhCCCCccC
Confidence            5678999999999865 88999999999998  7776  33332  2  568999999999999999999999999987

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.58  E-value=1.3e-14  Score=121.80  Aligned_cols=134  Identities=12%  Similarity=0.148  Sum_probs=101.2

Q ss_pred             CCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCC----C-----------C-----CCCCCCCCC
Q 013598          134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKD----E-----------P-----KKKEPEDMP  192 (439)
Q Consensus       134 PrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~----~-----------~-----akk~~e~~~  192 (439)
                      ++|||++.|.+.+.++++++.|.+.. .++.+.+..+...+... ++..    .           +     ........+
T Consensus        40 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  118 (198)
T 1qm9_A           40 KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQL-PREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP  118 (198)
T ss_dssp             CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCC-SSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCC
T ss_pred             CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCC-CCcCCccccccccccCCchhhccCccccccccCCC
Confidence            38999999999999999999999877 77888887766543211 1100    0           0     001112345


Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCC-CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVP-GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vG-gvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ++.+|||+|||...+ ..+|+++|..+| .|.+|++  ..+       .||||||+|.+.++|.++|+.+||+.|..|  
T Consensus       119 ~~~~l~v~nl~~~~~-~~~l~~~f~~~G~~v~~v~i--~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--  186 (198)
T 1qm9_A          119 PSATLHLSNIPPSVS-EEDLKVLFSSNGGVVKGFKF--FQK-------DRKMALIQMGSVEEAVQALIDLHNHDLGEN--  186 (198)
T ss_dssp             CCCEEEECCCCTTCC-HHHHHHHHHHTTSCCCEEEE--SST-------TSSCEEEECSSHHHHHHHHHHHTSSCCSSC--
T ss_pred             CccEEEEeCCCCCCC-HHHHHHHHHHcCCCceEEEE--EeC-------CCcEEEEEeCCHHHHHHHHHHhcCCccCCC--
Confidence            789999999999865 889999999999 8988873  222       189999999999999999999999998644  


Q ss_pred             eceeeeeeec
Q 013598          272 QKQIRCEMVN  281 (439)
Q Consensus       272 EK~ikcE~~~  281 (439)
                       +.++++.+.
T Consensus       187 -~~l~v~~a~  195 (198)
T 1qm9_A          187 -HHLRVSFSK  195 (198)
T ss_dssp             -CSCCEEEEC
T ss_pred             -CeEEEEeec
Confidence             456666654

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.58  E-value=7.6e-15  Score=117.36  Aligned_cols=90  Identities=17%  Similarity=0.233  Sum_probs=75.5

Q ss_pred             CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       188 ~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      +....++.+|||+|||..++ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.|||..|.
T Consensus        16 ~~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~   90 (126)
T 3ex7_B           16 PQRSVEGWILFVTGVHEEAT-EEDIHDKFAEYGEIKNIH--LNLDRRTG--YLKGYTLVEYETYKEAQAAMEGLNGQDLM   90 (126)
T ss_dssp             BCCCSSSEEEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--CCBCTTTS--SBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred             CCCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence            34556788999999999865 889999999999999998  55565576  89999999999999999999999999987


Q ss_pred             cceeeceeeeeeecCCCCC
Q 013598          268 FGKVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       268 fgKVEK~ikcE~~~~~S~~  286 (439)
                      +    +.|+|+.+......
T Consensus        91 g----~~l~v~~a~~~~~~  105 (126)
T 3ex7_B           91 G----QPISVDWCFVRGPP  105 (126)
T ss_dssp             S----SBCEEEESEESSSC
T ss_pred             C----eEEEEEEecCCCCC
Confidence            4    56777777655544

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=8.9e-15  Score=113.33  Aligned_cols=86  Identities=20%  Similarity=0.218  Sum_probs=72.3

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHH----HHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLK----SAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQ  264 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~----~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq  264 (439)
                      ....++.+|||+|||...+ +.+|+    .+|..+|.|.+|+  ...++.|     ||||||+|.+.++|.++|+.+||.
T Consensus         4 ~~~~~~~~l~V~nL~~~~~-~~~l~~~l~~~F~~~G~v~~v~--i~~~~~~-----rg~afV~f~~~~~A~~Ai~~l~g~   75 (96)
T 2dgx_A            4 GSSGNGADVQVSNIDYRLS-RKELQQLLQEAFARHGKVKSVE--LSPHTDY-----QLKAVVQMENLQDAIGAVNSLHRY   75 (96)
T ss_dssp             CCCSSCEEEEEESCCTTSC-HHHHHHHHHHHHHHHSCEEEEE--ECSCCST-----TCCEEEEESSHHHHHHHHHHHTTE
T ss_pred             CCCCCCCEEEEECCCCCCC-HHHHHHHHHHhccccCcEEEEE--EEeCCCC-----CeEEEEEECCHHHHHHHHHHhCCC
Confidence            3456788999999999865 88999    9999999999998  4455544     899999999999999999999999


Q ss_pred             eeccceeeceeeeeeecCCCCC
Q 013598          265 IIAFGKVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       265 ~~~fgKVEK~ikcE~~~~~S~~  286 (439)
                      .|.    -+.|+++.+...+..
T Consensus        76 ~~~----gr~l~V~~a~~~~~~   93 (96)
T 2dgx_A           76 KIG----SKKILVSLATGASGP   93 (96)
T ss_dssp             EET----TEEEEEEECCCSSCC
T ss_pred             EEC----CeEEEEEEcCCCCCC
Confidence            987    357888888766543

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=1.3e-14  Score=114.22  Aligned_cols=89  Identities=16%  Similarity=0.307  Sum_probs=74.7

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ....+..+|||+|||...+ +.+|+.+|..+|.|.+++  ...++ ||  .+||||||+|.+.++|.++|+.+||+.|..
T Consensus        20 ~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~~~--i~~~~-~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~~   93 (114)
T 1x5o_A           20 QQEQDPTNLYISNLPLSMD-EQELENMLKPFGQVISTR--ILRDS-SG--TSRGVGFARMESTEKCEAVIGHFNGKFIKT   93 (114)
T ss_dssp             CCCCCTTEEEEESCCTTCC-HHHHHHTTTTTSCEEEEE--EEECS-SS--CEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred             ccCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEECC-CC--CcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence            3445778999999999865 889999999999999998  44555 65  899999999999999999999999999865


Q ss_pred             ce----eeceeeeeeecCC
Q 013598          269 GK----VQKQIRCEMVNSS  283 (439)
Q Consensus       269 gK----VEK~ikcE~~~~~  283 (439)
                      .+    --++++|..++..
T Consensus        94 ~~~~~~~~~~l~v~~a~p~  112 (114)
T 1x5o_A           94 PPGVSAPTEPLLCKFSGPS  112 (114)
T ss_dssp             CTTSCCCSSCBEEEECCCS
T ss_pred             CccccCCCCceeEEccCCC
Confidence            33    3577888887743

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=2e-14  Score=113.73  Aligned_cols=89  Identities=17%  Similarity=0.266  Sum_probs=74.1

Q ss_pred             CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       188 ~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      +......-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.|+  .+||||||+|.+.++|.++|+.+|| .|.
T Consensus        11 ~~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~Ai~~~~~-~~~   84 (116)
T 2cqd_A           11 SQKDTTFTKIFVGGLPYHTT-DASLRKYFEGFGDIEEAV--VITDRQTG--KSRGYGFVTMADRAAAERACKDPNP-IID   84 (116)
T ss_dssp             CCCSCSSSEEEEECCCSSCC-HHHHHHHHHTTSCEEEEE--ESCCSSSC--CCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred             CcCCCCCCEEEEeCCCCCCC-HHHHHHHHHhCCCeeEEE--EEEcCCCC--ccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence            34445778999999999865 889999999999999998  55666676  8999999999999999999999998 655


Q ss_pred             cceeeceeeeeeecCCCCC
Q 013598          268 FGKVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       268 fgKVEK~ikcE~~~~~S~~  286 (439)
                          -+.|+++.+......
T Consensus        85 ----g~~l~V~~a~~~~~~   99 (116)
T 2cqd_A           85 ----GRKANVNLAYLGAKP   99 (116)
T ss_dssp             ----TEECEEEESTTTCCC
T ss_pred             ----CEEEEEEEcccCCCc
Confidence                367788887655433

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.58  E-value=3.2e-15  Score=117.26  Aligned_cols=81  Identities=19%  Similarity=0.250  Sum_probs=68.4

Q ss_pred             CccEEEEcCCCC------CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          193 SGIRVRLLNLPK------KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       193 dgvRVrVGNLPk------k~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      .+-+|||+|||.      ... ..+|+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||+.|
T Consensus         5 ~~~~vfV~nLp~v~~~~~~~~-~~~L~~~F~~~G~i~~v~--i~~d~~tg--~~kG~afV~f~~~~~A~~Ai~~lng~~~   79 (100)
T 3ns6_A            5 SDQYIVVNGAPVIPSAKVPVL-KKALTSLFSKAGKVVNME--FPIDEATG--KTKGFLFVECGSMNDAKKIIKSFHGKRL   79 (100)
T ss_dssp             GGGEEEEESCCCCBGGGHHHH-HHHHHHHHHTTSCEEEEE--CCEETTTT--EECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred             cCcEEEEeCCCcCChHHHHHH-HHHHHHHHHhcCCEeEEE--EEEcCCCC--ccceEEEEEECCHHHHHHHHHHhCCccc
Confidence            467899999999      642 779999999999999998  55666787  9999999999999999999999999998


Q ss_pred             ccceeeceeeeeeec
Q 013598          267 AFGKVQKQIRCEMVN  281 (439)
Q Consensus       267 ~fgKVEK~ikcE~~~  281 (439)
                      .++   +.|++..+.
T Consensus        80 ~g~---r~l~V~~a~   91 (100)
T 3ns6_A           80 DLK---HRLFLYTMK   91 (100)
T ss_dssp             SSS---CBCEEEESH
T ss_pred             CCC---eEEEEEECc
Confidence            752   455665554

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=1.3e-14  Score=114.02  Aligned_cols=89  Identities=21%  Similarity=0.206  Sum_probs=72.9

Q ss_pred             CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCe----eEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC
Q 013598          188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGI----INIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR  263 (439)
Q Consensus       188 ~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgv----isIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NG  263 (439)
                      ....+++-+|||+|||...+ +.+|+++|..+|.|    +.+++.      ||  .+||||||+|.+.++|.++|+.|||
T Consensus        19 ~~~~~~~~~l~V~nLp~~~t-~~~l~~~f~~~G~v~~~~~~~~~~------~g--~~~g~afV~f~~~~~a~~Ai~~l~g   89 (115)
T 2cpx_A           19 YNPGEPNKVLYLKNLSPRVT-ERDLVSLFARFQEKKGPPIQFRMM------TG--RMRGQAFITFPNKEIAWQALHLVNG   89 (115)
T ss_dssp             CCCCSCCSEEEEECCCTTCC-HHHHHHHTHHHHHSSSSCCEEEEE------CS--SSCSEEEEECSSHHHHHHHHHHSTT
T ss_pred             cCCCCCCCEEEEeCCCCCCC-HHHHHHHHHHhCCccceEEEEEcC------CC--ccceEEEEEECCHHHHHHHHHHhCC
Confidence            34456789999999999865 88999999999998    454422      54  7899999999999999999999999


Q ss_pred             ceeccceeeceeeeeeecCCCCCCCC
Q 013598          264 QIIAFGKVQKQIRCEMVNSSSSNSVD  289 (439)
Q Consensus       264 q~~~fgKVEK~ikcE~~~~~S~~~~~  289 (439)
                      ..|.    -+.|+|+.+.......+.
T Consensus        90 ~~~~----g~~l~v~~a~~~~~~~~~  111 (115)
T 2cpx_A           90 YKLY----GKILVIEFGKNKKQRSSG  111 (115)
T ss_dssp             CBCS----SCBCEEEECCCCSCCCCC
T ss_pred             CEeC----CcEEEEEEccCCCCCCCC
Confidence            9985    467888888876655543

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.1e-14  Score=113.24  Aligned_cols=88  Identities=14%  Similarity=0.209  Sum_probs=74.2

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ..++.-+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+. ||+.|.+ 
T Consensus        12 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~v~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~a~~~-~~~~~~g-   84 (105)
T 2dh8_A           12 GADEIGKLFVGGLDWSTT-QETLRSYFSQYGEVVDCV--IMKDKTTN--QSRGFGFVKFKDPNCVGTVLAS-RPHTLDG-   84 (105)
T ss_dssp             CSSSSSEECCBSCCTTCC-HHHHHHHHHTTSCEEEEE--EEECSSSC--CEEEEEEEEESSTTHHHHHHHH-CSEEETT-
T ss_pred             CCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EeeCCCCC--CcceEEEEEECCHHHHHHHHHh-CCCeECC-
Confidence            345778999999999865 889999999999999998  55666686  8999999999999999999999 9999874 


Q ss_pred             eeeceeeeeeecCCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSNS  287 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~~  287 (439)
                         +.|+|+.+.......
T Consensus        85 ---~~l~V~~a~~~~~~~   99 (105)
T 2dh8_A           85 ---RNIDPKPCTPRGMQP   99 (105)
T ss_dssp             ---EEEBCCCSCCSSCCT
T ss_pred             ---EEEEEEEccCCCCCC
Confidence               567777776655443

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.58  E-value=8.8e-15  Score=113.71  Aligned_cols=85  Identities=15%  Similarity=0.181  Sum_probs=71.1

Q ss_pred             CCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          187 EPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       187 ~~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      ++...+.+-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++ ||  .+||||||+|.+.++|.++|+.|||..|
T Consensus        22 ~~~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~-~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~   95 (107)
T 3ulh_A           22 GGAGVETGGKLLVSNLDFGVS-DADIQELFAEFGTLKKAA--VHYDR-SG--RSLGTADVHFERKADALKAMKQYNGVPL   95 (107)
T ss_dssp             --CCCCCSEEEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--EEECT-TS--CEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred             CCCCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEECC-CC--CcceEEEEEECCHHHHHHHHHHhCCCEe
Confidence            445567889999999999865 889999999999999998  44444 65  8999999999999999999999999998


Q ss_pred             ccceeeceeeeeeec
Q 013598          267 AFGKVQKQIRCEMVN  281 (439)
Q Consensus       267 ~fgKVEK~ikcE~~~  281 (439)
                      .+    +.|+|+.+.
T Consensus        96 ~g----~~l~V~~a~  106 (107)
T 3ulh_A           96 DG----RPMNIQLVT  106 (107)
T ss_dssp             TT----EECEEEEEC
T ss_pred             CC----cEEEEEEeC
Confidence            74    566776654

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=2.1e-14  Score=111.72  Aligned_cols=86  Identities=20%  Similarity=0.338  Sum_probs=72.0

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCC-CCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKT-KDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKT-gDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ..+...+|||+|||...+ +.+|+.+|..+| |.+|+  ...++.| |  .+||||||+|.+.++|.++| .+||..|.+
T Consensus        11 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G-i~~v~--i~~~~~~~g--~~~g~afV~f~~~~~a~~A~-~l~g~~~~g   83 (104)
T 1wi8_A           11 PKSPPYTAFLGNLPYDVT-EESIKEFFRGLN-ISAVR--LPREPSNPE--RLKGFGYAEFEDLDSLLSAL-SLNEESLGN   83 (104)
T ss_dssp             CSSSCEEEEEESCCSSCC-HHHHHHHTTTSC-EEEEE--CCBCSSCTT--SBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred             CCCCCCEEEEeCCCCcCC-HHHHHHHHHHCC-ceEEE--EecCCCCCC--CcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence            345678999999999865 889999999999 99998  5566666 5  89999999999999999999 999999873


Q ss_pred             ceeeceeeeeeecCCCCC
Q 013598          269 GKVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~~  286 (439)
                          +.|+++.+......
T Consensus        84 ----~~l~V~~a~~~~~~   97 (104)
T 1wi8_A           84 ----KRIRVDVADQAQDK   97 (104)
T ss_dssp             ----EECEEEECCCCCCC
T ss_pred             ----cEEEEEEccCCCCC
Confidence                56777777665443

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.3e-14  Score=112.27  Aligned_cols=85  Identities=19%  Similarity=0.191  Sum_probs=72.0

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhcc-CCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCce-ecc
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKG-VPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQI-IAF  268 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~-vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~-~~f  268 (439)
                      .+.+.+|||+|||...+ +.+|+++|.. +|.|.+|+  ...++ ||  .+||||||+|.+.++|.++|+.+||.. |.+
T Consensus         6 ~~~~~~l~V~nLp~~~t-~~~l~~~F~~~~G~v~~v~--i~~~~-~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g   79 (104)
T 2dhg_A            6 SGPEYSLFVGDLTPDVD-DGMLYEFFVKVYPSCRGGK--VVLDQ-TG--VSKGYGFVKFTDELEQKRALTECQGAVGLGS   79 (104)
T ss_dssp             SSCCCCEEEECCCTTCC-HHHHHHHHHHHCTTEEEEE--EEECT-TC--CEEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred             CCCCcEEEEeCCCCCCC-HHHHHHHHHHhCCCeEEEE--EEECC-CC--CccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence            35678999999999865 8899999999 99999998  55565 76  899999999999999999999999999 763


Q ss_pred             ceeeceeeeeeecCCCC
Q 013598          269 GKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~  285 (439)
                          +.|+++.+.....
T Consensus        80 ----~~l~v~~a~~~~~   92 (104)
T 2dhg_A           80 ----KPVRLSVAIPKAS   92 (104)
T ss_dssp             ----SCCCCCBCCCCCS
T ss_pred             ----EeEEEEEccCCCc
Confidence                5677777765543

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=3.5e-15  Score=111.73  Aligned_cols=73  Identities=22%  Similarity=0.295  Sum_probs=65.1

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .+++-+|||+|||...+ +.+|+.+|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus         2 ~~~~~~l~v~nlp~~~t-~~~l~~~f~~~G~i~~~~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   74 (85)
T 1x4e_A            2 SSGSSGLYIRGLQPGTT-DQDLVKLCQPYGKIVSTK--AILDKTTN--KCKGYGFVDFDSPSAAQKAVTALKASGVQA   74 (85)
T ss_dssp             CCCCCEEEEESCCTTCC-HHHHHTTSTTTSCEEEEE--EECCSSSC--SCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred             CCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--CcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence            35678999999999865 889999999999999998  55566676  889999999999999999999999999875

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.57  E-value=5.7e-15  Score=113.18  Aligned_cols=85  Identities=22%  Similarity=0.255  Sum_probs=71.4

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      +..-+|||+|||...+ +.+|+.+|..+|.|..++  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.+   
T Consensus        13 ~~~~~l~v~nLp~~~t-~~~l~~~F~~~G~v~~~~--~~~~~~~g--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---   84 (98)
T 2cqp_A           13 PGPTIIKVQNMPFTVS-IDEILDFFYGYQVIPGSV--CLKYNEKG--MPTGEAMVAFESRDEATAAVIDLNDRPIGS---   84 (98)
T ss_dssp             CSSEEEEEESCCTTCC-HHHHHHHTTTSCCCTTTC--EEEECSSS--CEEEEEEEEESCHHHHHHHHHHTTTCEETT---
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHHHcCCccceE--EEEECCCC--CeeeEEEEEECCHHHHHHHHHHhCCCeeCC---
Confidence            4567999999999865 889999999999987665  44556676  899999999999999999999999999873   


Q ss_pred             eceeeeeeecCCCC
Q 013598          272 QKQIRCEMVNSSSS  285 (439)
Q Consensus       272 EK~ikcE~~~~~S~  285 (439)
                       +.|+++.+...++
T Consensus        85 -~~l~V~~a~~~~s   97 (98)
T 2cqp_A           85 -RKVKLVLGSGPSS   97 (98)
T ss_dssp             -EECEEEESSCSSC
T ss_pred             -eEEEEEEcCCCCC
Confidence             6678887765543

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.57  E-value=2.4e-14  Score=115.47  Aligned_cols=87  Identities=22%  Similarity=0.284  Sum_probs=73.3

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      ..+.-+|||+|||...+ ..+|+++|..+|.|.+|+  ...++ ||  .+||||||+|.+.++|.++|+.+||..|.+  
T Consensus         4 ~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~-~g--~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g--   75 (116)
T 2fy1_A            4 ADHPGKLFIGGLNRETN-EKMLKAVFGKHGPISEVL--LIKDR-TS--KSRGFAFITFENPADAKNAAKDMNGKSLHG--   75 (116)
T ss_dssp             TCSCCEEEEECCTTTCC-HHHHHHHHHTSSCCSEEE--EECST-TT--TCCCEEEEECSSHHHHHHHHHHCSSCBCSS--
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEECC-CC--CcccEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence            34667999999999865 889999999999999998  44454 65  899999999999999999999999999873  


Q ss_pred             eeceeeeeeecCCCCCC
Q 013598          271 VQKQIRCEMVNSSSSNS  287 (439)
Q Consensus       271 VEK~ikcE~~~~~S~~~  287 (439)
                        +.|+|+.+...+...
T Consensus        76 --~~l~V~~a~~~~~~~   90 (116)
T 2fy1_A           76 --KAIKVEQAKKPSFQS   90 (116)
T ss_dssp             --SBCEEEECCCSSCSS
T ss_pred             --EEEEEEECCCCCCCC
Confidence              567888887665443

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=2.9e-14  Score=110.42  Aligned_cols=89  Identities=21%  Similarity=0.340  Sum_probs=73.7

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ....+.-+|||+|||...+ +.+|+++|..+|.|.+|++.  .++.    .+||||||+|.+.++|.++|+.+||+.|. 
T Consensus        10 ~~~~~~~~l~V~nlp~~~t-~~~l~~~f~~~G~v~~v~i~--~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~-   81 (103)
T 2cq3_A           10 ESKSTPKRLHVSNIPFRFR-DPDLRQMFGQFGKILDVEII--FNER----GSKGFGFVTFENSADADRAREKLHGTVVE-   81 (103)
T ss_dssp             CCSCCCCEEEEESCCTTCC-HHHHHHHGGGTSCEEEEEEE--CCTT----TTCCEEEEEESCHHHHHHHHHHHTTCEET-
T ss_pred             CCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEEE--ecCC----CCcEEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence            3445778999999999865 88999999999999999844  3332    27999999999999999999999999987 


Q ss_pred             ceeeceeeeeeecCCCCCCC
Q 013598          269 GKVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~~~~  288 (439)
                         -+.|+++.+..+....+
T Consensus        82 ---g~~l~v~~a~~~~~~~~   98 (103)
T 2cq3_A           82 ---GRKIEVNNATARVMTNS   98 (103)
T ss_dssp             ---TEECEEEECCSSCCCCC
T ss_pred             ---CEEEEEEEcccCCCCCC
Confidence               36688888877765554

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=2.5e-14  Score=110.78  Aligned_cols=89  Identities=21%  Similarity=0.264  Sum_probs=74.3

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ....++-+|||+|||...+ +.+|+++|..+|.|.+|++..  +  ||  .+||||||+|.+.++|.++|+.+||..|. 
T Consensus        10 ~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~--~--~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~-   81 (103)
T 2d9p_A           10 ITRYQVVNLYVKNLDDGID-DERLRKAFSPFGTITSAKVMM--E--GG--RSKGFGFVCFSSPEEATKAVTEMNGRIVA-   81 (103)
T ss_dssp             CCCSSCCCEEEECCCTTCC-HHHHHHTTTTTSCEEEEEEEE--C--SS--SEEEEEEEEESSHHHHHHHHHHHTTCBSS-
T ss_pred             cCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEEEEc--C--CC--CcCEEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence            3445788999999999865 889999999999999998543  3  54  88999999999999999999999999986 


Q ss_pred             ceeeceeeeeeecCCCCCCC
Q 013598          269 GKVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~~~~  288 (439)
                         -+.|+|+.+.......+
T Consensus        82 ---g~~l~V~~a~~~~~~~~   98 (103)
T 2d9p_A           82 ---TKPLYVALAQRKEERQS   98 (103)
T ss_dssp             ---SSBCEEEECSSCCCCCC
T ss_pred             ---CcEEEEEEecccccCCC
Confidence               36778888776655443

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.57  E-value=9.5e-15  Score=116.54  Aligned_cols=87  Identities=16%  Similarity=0.242  Sum_probs=73.2

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...+++-+|||+|||...+ ..+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||..|.+
T Consensus        21 ~~~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g   95 (108)
T 2jrs_A           21 KGSAGPMRLYVGSLHFNIT-EDMLRGIFEPFGRIESIQ--LMMDSETG--RSKGYGFITFSDSECAKKALEQLNGFELAG   95 (108)
T ss_dssp             CSCSSCEEEEEECCCSSCC-HHHHHHHHTTTSCEEEEE--EEEETTTT--EEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred             cCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEEcCCCC--ccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence            3345778999999999865 889999999999999998  44555576  899999999999999999999999999874


Q ss_pred             ceeeceeeeeeecCCC
Q 013598          269 GKVQKQIRCEMVNSSS  284 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S  284 (439)
                          +.|+|+.+..++
T Consensus        96 ----~~l~V~~a~~k~  107 (108)
T 2jrs_A           96 ----RPMKVGHVTERT  107 (108)
T ss_dssp             ----SCCEEECSCSSC
T ss_pred             ----EEEEEEEcccCC
Confidence                567777776543

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.56  E-value=1.2e-14  Score=108.52  Aligned_cols=83  Identities=19%  Similarity=0.239  Sum_probs=68.8

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ..+.+|||+|||...+ +.+|+++|..+|.|.++++  ..++.|+ ..+||||||+|.+.++|.++|+.+||..|.+   
T Consensus         2 ~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~~~i--~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---   74 (88)
T 4a8x_A            2 MKPTKVHIGRLTRNVT-KDHIMEIFSTYGKIKMIDM--PVERMHP-HLSKGYAYVEFENPDEAEKALKHMDGGQIDG---   74 (88)
T ss_dssp             CCCCEEEEECCCTTCC-HHHHHHHHHTTSCEEEEEC--CEETTEE-EEECSEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHHhCCCEEEEEE--EeCCCCC-CCCCcEEEEEEecHHHHHHHHHHcCCCeECC---
Confidence            4567999999999865 8899999999999999984  4444454 2489999999999999999999999999874   


Q ss_pred             eceeeeeeecC
Q 013598          272 QKQIRCEMVNS  282 (439)
Q Consensus       272 EK~ikcE~~~~  282 (439)
                       +.++++.+..
T Consensus        75 -~~l~v~~a~~   84 (88)
T 4a8x_A           75 -QEITATAVLA   84 (88)
T ss_dssp             -EECEEEEECC
T ss_pred             -eEEEEEECCC
Confidence             4566766644

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.56  E-value=2.2e-14  Score=125.48  Aligned_cols=135  Identities=13%  Similarity=0.153  Sum_probs=101.4

Q ss_pred             CCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCC---------------CCCCC-----CCCCCC
Q 013598          134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKD---------------EPKKK-----EPEDMP  192 (439)
Q Consensus       134 PrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~---------------~~akk-----~~e~~~  192 (439)
                      ++|||++.|.+.+.++++++.|.+.. .++.+.+..+....... ++..               .+...     .....+
T Consensus        71 ~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (229)
T 2adc_A           71 KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQL-PREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP  149 (229)
T ss_dssp             TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCC-CCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCC
T ss_pred             CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccC-ccccccccccccccccCcccccCCccccccccCCC
Confidence            38999999999999999999999877 77888888776542211 0100               00000     112345


Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCC-CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVP-GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vG-gvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ++.+|||+|||...+ +.+|+.+|..+| .|..|+.  ..+       .||||||+|.+.++|.++|+.+||..|..|  
T Consensus       150 ~~~~l~V~nlp~~~t-~~~l~~~f~~~G~~i~~v~i--~~~-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g--  217 (229)
T 2adc_A          150 PSATLHLSNIPPSVS-EEDLKVLFSSNGGVVKGFKF--FQK-------DRKMALIQMGSVEEAVQALIDLHNHDLGEN--  217 (229)
T ss_dssp             SCSEEEEECCCTTCC-HHHHHHHHHTTSCCEEEEEE--CSS-------STTCEEEEESSHHHHHHHHHHHTTCBSSSS--
T ss_pred             CCCEEEEeCCCccCC-HHHHHHHHHHcCCCeeEEEE--EEC-------CCcEEEEEECCHHHHHHHHHHHCCCccCCC--
Confidence            689999999999865 889999999999 9988873  221       289999999999999999999999998734  


Q ss_pred             eceeeeeeecC
Q 013598          272 QKQIRCEMVNS  282 (439)
Q Consensus       272 EK~ikcE~~~~  282 (439)
                       +.|+|..+.+
T Consensus       218 -~~l~v~~a~~  227 (229)
T 2adc_A          218 -HHLRVSFSKS  227 (229)
T ss_dssp             -CBCEEEECSS
T ss_pred             -CeEEEEEecC
Confidence             3566666543

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.56  E-value=2.1e-14  Score=111.90  Aligned_cols=89  Identities=19%  Similarity=0.262  Sum_probs=73.3

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCC-eeEEeeccc-cCCCCCCCcccceEEEeecCHHHHHHHHHHhC-C-ce
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPG-IINIIPVVS-GNKKTKDPICKGFAFVDFESEDYATRFVQLFS-R-QI  265 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGg-visIkpAv~-~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~N-G-q~  265 (439)
                      .+++.-+|||+|||...+ +.+|+.+|..+|. |.+++  .. .++.||  .+||||||+|.+.++|.++|+.+| | ..
T Consensus         4 ~s~~~~~l~V~nLp~~~t-~~~l~~~f~~~G~~v~~v~--i~~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~~g~~~   78 (109)
T 2dis_A            4 GSSGNCRLFIGGIPKMKK-REEILEEIAKVTEGVLDVI--VYASAADKM--KNRGFAFVEYESHRAAAMARRKLMPGRIQ   78 (109)
T ss_dssp             CCCCSEEEEEECCCTTSC-HHHHHHHHHHHSTTEEEEE--CCSSSCTTT--TTCCEEEEEESSHHHHHHHHTTTTTCCSC
T ss_pred             cccCCCEEEEeCCCCcCC-HHHHHHHHHHhcCCceEEE--EEccCCCCC--CcCcEEEEEecCHHHHHHHHHHhhCCCce
Confidence            456788999999999865 8899999999998 99997  44 566676  899999999999999999999995 4 77


Q ss_pred             eccceeeceeeeeeecCCCCCC
Q 013598          266 IAFGKVQKQIRCEMVNSSSSNS  287 (439)
Q Consensus       266 ~~fgKVEK~ikcE~~~~~S~~~  287 (439)
                      |.+    +.|+++.+.......
T Consensus        79 ~~g----~~l~V~~a~~~~~~~   96 (109)
T 2dis_A           79 LWG----HQIAVDWAEPEIDVD   96 (109)
T ss_dssp             BTT----BCCEEEESCSSCSTT
T ss_pred             ecC----CeEEEEEcCCCCCcC
Confidence            663    577888887665433

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.56  E-value=1.4e-14  Score=118.17  Aligned_cols=86  Identities=21%  Similarity=0.289  Sum_probs=72.0

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeE--EeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCc---
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIIN--IIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQ---  264 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvis--IkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq---  264 (439)
                      .....-+|||+|||...+ +.+|+++|..+|.|..  |+  ...++.||  .+||||||+|.+. +|.++|+.+||.   
T Consensus        19 ~~~~~~~lfV~nL~~~~t-e~~L~~~F~~~G~v~~~~v~--i~~d~~tg--~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~   92 (131)
T 2m2b_A           19 SENANDTIILRNLNPHST-MDSILGALAPYAVLSSSNVR--VIKDKQTQ--LNRGFAFIQLSTI-EAAQLLQILQALHPP   92 (131)
T ss_dssp             CSCCCCEEEECSCCTTCC-SHHHHHHHGGGCCCCTTTEE--CCBCSSSS--SBCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred             CCCCCCEEEEeCCCCCCC-HHHHHHHHHHhCCcceeeEE--EEEcCCCC--CcceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence            335678999999999865 8899999999999966  76  56777787  9999999999999 999999999999   


Q ss_pred             -eeccceeeceeeeeeecCCCC
Q 013598          265 -IIAFGKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       265 -~~~fgKVEK~ikcE~~~~~S~  285 (439)
                       .|.+    +.|+++.+..+..
T Consensus        93 ~~~~g----r~l~V~~a~~~~~  110 (131)
T 2m2b_A           93 LTIDG----KTINVEFAKGSKR  110 (131)
T ss_dssp             CCGGG----CCCCCEECCCSCC
T ss_pred             ccCCC----EEEEEEECCCCCC
Confidence             7663    5667777766533

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=4.8e-14  Score=110.65  Aligned_cols=85  Identities=20%  Similarity=0.226  Sum_probs=70.9

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...+.+-+|||+|||...+ +.+|+++|..+|.|.+|++  ..++ ||  .+||||||+|.+.++|.++|+.|||+.|.+
T Consensus        10 ~~~~~~~~l~V~nlp~~~~-~~~l~~~f~~~G~i~~~~i--~~~~-~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   83 (114)
T 2do0_A           10 QAGRLGSTVFVANLDYKVG-WKKLKEVFSMAGVVVRADI--LEDK-DG--KSRGIGTVTFEQSIEAVQAISMFNGQLLFD   83 (114)
T ss_dssp             CCCCCCSCEEEESCCTTCC-HHHHHHHHTTTSCEEEEEE--EECT-TC--SEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             ccCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEE--EECC-CC--CeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence            3445678999999999865 8899999999999999984  3443 44  899999999999999999999999999873


Q ss_pred             ceeeceeeeeeecCC
Q 013598          269 GKVQKQIRCEMVNSS  283 (439)
Q Consensus       269 gKVEK~ikcE~~~~~  283 (439)
                          +.|+|+.+...
T Consensus        84 ----~~l~v~~a~~~   94 (114)
T 2do0_A           84 ----RPMHVKMDERA   94 (114)
T ss_dssp             ----EECEEEECSCC
T ss_pred             ----CEEEEEEcccC
Confidence                56777776643

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.56  E-value=2.1e-14  Score=116.52  Aligned_cols=87  Identities=16%  Similarity=0.277  Sum_probs=74.3

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ...-+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||..|.    
T Consensus        40 ~~~~~l~V~nLp~~~~-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~----  110 (139)
T 1u6f_A           40 DVLRNLMVNYIPTTVD-EVQLRQLFERYGPIESVK--IVCDRETR--QSRGYGFVKFQSGSSAQQAIAGLNGFNIL----  110 (139)
T ss_dssp             TTTSEEEEESCSTTCC-HHHHHHHHHHHSCEEEEE--EEEETTTT--EEEEEEEEEESSHHHHHHHHHHTTTEECS----
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEEcCCCC--CcceEEEEEECCHHHHHHHHHHhCCCEEC----
Confidence            4678999999999865 889999999999999998  45565576  89999999999999999999999999987    


Q ss_pred             eceeeeeeecCCCCCC
Q 013598          272 QKQIRCEMVNSSSSNS  287 (439)
Q Consensus       272 EK~ikcE~~~~~S~~~  287 (439)
                      -+.|+|+.+.......
T Consensus       111 g~~l~v~~a~~~~~~~  126 (139)
T 1u6f_A          111 NKRLKVALAASGHQRP  126 (139)
T ss_dssp             SCEEEEEESSCCCCCC
T ss_pred             CeEEEEEECCCCCCCC
Confidence            3578888887665443

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.55  E-value=1.5e-14  Score=108.41  Aligned_cols=81  Identities=15%  Similarity=0.271  Sum_probs=68.4

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      ++-+|||+|||...+ +.+|+++|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++| .+||+.|.+    
T Consensus         5 ~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~a~-~~~g~~~~g----   74 (89)
T 3ucg_A            5 DARSIYVGNVDYGAT-AEELEAHFHGCGSVNRVT--ILCDKFSG--HPKGFAYIEFSDKESVRTSL-ALDESLFRG----   74 (89)
T ss_dssp             HHTEEEEESCCTTCC-HHHHHHHHGGGCCEEEEE--EEESCSSS--SCCEEEEEEESSTHHHHHHG-GGTTCEETT----
T ss_pred             cCCEEEEeCCCCCCC-HHHHHHHHHhCCCEEEEE--EEecCCCC--CcceEEEEEECCHHHHHHHH-hcCCCEECC----
Confidence            356899999999865 889999999999999998  44565576  89999999999999999999 999999874    


Q ss_pred             ceeeeeeecCC
Q 013598          273 KQIRCEMVNSS  283 (439)
Q Consensus       273 K~ikcE~~~~~  283 (439)
                      +.|+|+.+...
T Consensus        75 ~~l~V~~a~~~   85 (89)
T 3ucg_A           75 RQIKVIPKRTN   85 (89)
T ss_dssp             EECEEEETTTT
T ss_pred             cEEEEEEccCC
Confidence            45677666543

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.55  E-value=1e-14  Score=116.95  Aligned_cols=80  Identities=20%  Similarity=0.335  Sum_probs=66.6

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK  273 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK  273 (439)
                      ..+|||+|||...+ +.+|+++|..+|.|.++++..  ++.    .+||||||+|.+.++|.++|+.|||+.|.+    +
T Consensus         5 ~~~lfV~nLp~~~t-e~~L~~~F~~~G~v~~v~i~~--d~~----~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~   73 (115)
T 4f25_A            5 SGNIFIKNLDKSID-NKALYDTFSAFGNILSCKVVC--DEN----GSKGYGFVHFETQEAAERAIEKMNGMLLND----R   73 (115)
T ss_dssp             CCEEEEESCCTTCC-HHHHHHHHGGGSCEEEEEEEE--ETT----EEEEEEEEEESCHHHHHHHHHHHTTCEETT----E
T ss_pred             CCEEEECCCCCCCC-HHHHHHHHhccCCEEEEEEee--cCC----CCCceEEEEECCHHHHHHHHHHcCCCEECC----E
Confidence            34799999999865 889999999999999998543  432    369999999999999999999999999874    4


Q ss_pred             eeeeeeecCCC
Q 013598          274 QIRCEMVNSSS  284 (439)
Q Consensus       274 ~ikcE~~~~~S  284 (439)
                      .|+|+.+..+.
T Consensus        74 ~i~V~~a~~~~   84 (115)
T 4f25_A           74 KVFVGRFKSRK   84 (115)
T ss_dssp             ECEEEESSCCC
T ss_pred             EEEEEECCCcc
Confidence            66777766543

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.55  E-value=8.7e-15  Score=107.31  Aligned_cols=67  Identities=24%  Similarity=0.335  Sum_probs=60.1

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      +|||+|||...+ +.+|+.+|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++++ +||+.|.+
T Consensus         1 ~l~v~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~a~~-~~~~~~~g   67 (75)
T 2mss_A            1 KIFVGGLSVNTT-VEDVKHYFEQFGKVDDAM--LMFDKTTN--RHRGFGFVTFESEDIVEKVCE-IHFHEINN   67 (75)
T ss_dssp             CEEEECCCSSCC-HHHHHHHHHTTSCCSEEC--CCBCSSST--TSCBEEEEECSCHHHHHHHHS-SSCCCSSS
T ss_pred             CEEEecCCCCCC-HHHHHHHHHhcCCEEEEE--EEecCCCC--CcCcEEEEEECCHHHHHHHHH-CCCCEECC
Confidence            699999999865 889999999999999998  45565576  899999999999999999998 89999875

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.55  E-value=5.4e-15  Score=133.03  Aligned_cols=80  Identities=24%  Similarity=0.288  Sum_probs=68.8

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCC--CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVP--GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vG--gvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      ...+|||+|||..++ +.+|+++|..+|  .|++|+  ...++.||  .+||||||+|.+.++|.++|+.|||+.|.+  
T Consensus        67 ~~~~lfVgnL~~~~t-e~~L~~~F~~~G~~~v~~v~--i~~d~~tg--~skGfaFV~f~~~~~a~~Ai~~lng~~~~G--  139 (229)
T 3q2s_C           67 KRIALYIGNLTWWTT-DEDLTEAVHSLGVNDILEIK--FFENRANG--QSKGFALVGVGSEASSKKLMDLLPKRELHG--  139 (229)
T ss_dssp             --CEEEEESCCTTCC-HHHHHHHHHTTTCCCEEEEE--EEECTTTC--CEEEEEEEEESCTTHHHHHHTTSTTSCBTT--
T ss_pred             CccEEEEeCCCCCCC-HHHHHHHHHHHCCcceEEEE--EEecCCCC--ccceEEEEEECCHHHHHHHHHHcCCCeECC--
Confidence            667999999999865 889999999999  999998  66777787  999999999999999999999999999884  


Q ss_pred             eeceeeeeeec
Q 013598          271 VQKQIRCEMVN  281 (439)
Q Consensus       271 VEK~ikcE~~~  281 (439)
                        +.|+|.++.
T Consensus       140 --r~l~V~~a~  148 (229)
T 3q2s_C          140 --QNPVVTPVN  148 (229)
T ss_dssp             --BCCEEEECC
T ss_pred             --EEeEEEECC
Confidence              456666554

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=3e-14  Score=108.31  Aligned_cols=83  Identities=17%  Similarity=0.268  Sum_probs=71.1

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...++.-+|||+|||...+ +.+|+.+|..+|.|.++++            +||||||+|.+.++|.++|+.+||..|. 
T Consensus         3 ~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~~------------~~g~afV~f~~~~~A~~A~~~l~g~~~~-   68 (90)
T 2dnq_A            3 SGSSGMVKLFIGNLPREAT-EQEIRSLFEQYGKVLECDI------------IKNYGFVHIEDKTAAEDAIRNLHHYKLH-   68 (90)
T ss_dssp             SCSSCCEEEEEESCCSSCC-HHHHHHHHHTSSCEEEEEE------------ETTEEEEEESSHHHHHHHHHHHTTCBCS-
T ss_pred             CCCCCCeEEEEeCCCCCCC-HHHHHHHHHhCCCEEEEEE------------ECCEEEEEECCHHHHHHHHHHhcCCccC-
Confidence            3456778999999999865 8899999999999999973            3899999999999999999999999987 


Q ss_pred             ceeeceeeeeeecCCCCCCC
Q 013598          269 GKVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~~~~  288 (439)
                         .+.|+|+.+..++...+
T Consensus        69 ---g~~l~v~~a~~~~~~~~   85 (90)
T 2dnq_A           69 ---GVNINVEASKNKSKASS   85 (90)
T ss_dssp             ---SCBCEEECSSCCCCCCS
T ss_pred             ---CcEEEEEECCCCCCCCC
Confidence               46788888877766544

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.55  E-value=1.2e-14  Score=115.75  Aligned_cols=84  Identities=23%  Similarity=0.269  Sum_probs=69.3

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCC--eeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec-
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPG--IINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA-  267 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGg--visIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~-  267 (439)
                      ...=.+|||+|||..++ +.+|+++|..+|.  +.+|+  ...|+.||  .+||||||+|.+.++|.++|+.+||.... 
T Consensus         6 ~~~m~tlfV~nL~~~~t-ee~L~~~F~~~G~i~v~~v~--i~~d~~tg--~srG~aFV~f~~~~~A~~Ai~~lng~~~~~   80 (95)
T 2lkz_A            6 HHHMDTIILRNIAPHTV-VDSIMTALSPYASLAVNNIR--LIKDKQTQ--QNRGFAFVQLSSAMDASQLLQILQSLHPPL   80 (95)
T ss_dssp             SCCCCEEEEESCCTTCC-HHHHHHHSTTTCCCCGGGEE--CCCCSSSS--SCSSEEEEECSSSHHHHHHHHHHHSSSSCE
T ss_pred             CCccCEEEEeCCCCcCC-HHHHHHHHHhhCCccEEEEE--EEecCCCC--CCceEeEEEECCHHHHHHHHHHhcCCCCCc
Confidence            34456899999999875 8899999999995  56776  66788897  99999999999999999999999998522 


Q ss_pred             --cceeeceeeeeeecC
Q 013598          268 --FGKVQKQIRCEMVNS  282 (439)
Q Consensus       268 --fgKVEK~ikcE~~~~  282 (439)
                        .|   +.++|+.+.+
T Consensus        81 ~i~G---r~i~V~~Aks   94 (95)
T 2lkz_A           81 KIDG---KTIGVDFAKS   94 (95)
T ss_dssp             EETT---EEEEEEECCC
T ss_pred             eECC---EEEEEEEccC
Confidence              14   5677777654

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.55  E-value=4.2e-14  Score=113.49  Aligned_cols=76  Identities=20%  Similarity=0.239  Sum_probs=67.2

Q ss_pred             CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       188 ~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      ....++.-+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||..|.
T Consensus        57 ~~~~~~~~~l~v~nlp~~~~-~~~l~~~f~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~  131 (140)
T 2ku7_A           57 GGSATTKRVLYVGGLAEEVD-DKVLHAAFIPFGDITDIQ--IPLDYETE--KHRGFAFVEFELAEDAAAAIDNMNESELF  131 (140)
T ss_dssp             CSSCSSCCEEEEECCCTTCC-HHHHHHHHGGGSCEEEEE--CCCCTTTC--CCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred             CCCCCCCcEEEEEeCCCCCC-HHHHHHHHHhcCCEEEEE--EeecCCCC--CcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            34456889999999999865 889999999999999998  55666676  88999999999999999999999999987


Q ss_pred             c
Q 013598          268 F  268 (439)
Q Consensus       268 f  268 (439)
                      +
T Consensus       132 g  132 (140)
T 2ku7_A          132 G  132 (140)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=1.2e-14  Score=112.12  Aligned_cols=83  Identities=18%  Similarity=0.283  Sum_probs=70.5

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      ..-+|||+|||...+ +.+|+++|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.+    
T Consensus         7 ~~~~l~V~nlp~~~~-~~~l~~~f~~~G~i~~~~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----   77 (104)
T 1p1t_A            7 SLRSVFVGNIPYEAT-EEQLKDIFSEVGPVVSFR--LVYDRETG--KPKGYGFCEYQDQETALSAMRNLNGREFSG----   77 (104)
T ss_dssp             HHSCEEEESCCTTSC-HHHHHHHHHTTSCCSEEE--EEEETTTT--EEEEEEEEECSCHHHHHHHHHHSSSBSCSS----
T ss_pred             CccEEEEeCCCCcCC-HHHHHHHHHhcCCeeEEE--EEeCCCCC--ccceEEEEEECCHHHHHHHHHHhCCCeeCC----
Confidence            457899999999865 889999999999999998  44555576  899999999999999999999999999863    


Q ss_pred             ceeeeeeecCCC
Q 013598          273 KQIRCEMVNSSS  284 (439)
Q Consensus       273 K~ikcE~~~~~S  284 (439)
                      +.++|+.+....
T Consensus        78 ~~l~v~~a~~~~   89 (104)
T 1p1t_A           78 RALRVDNAASEK   89 (104)
T ss_dssp             SCBEEEETTCTT
T ss_pred             cEEEEEeCCCcc
Confidence            567777766543

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.54  E-value=3e-14  Score=112.22  Aligned_cols=82  Identities=15%  Similarity=0.170  Sum_probs=68.5

Q ss_pred             CCccEEEEcCCCCCCc-----hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          192 PSGIRVRLLNLPKKKN-----IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~n-----i~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      ..+-+|||+|||....     ...+|+.+|..+|.|.++++.    +.||  .+||||||+|.+.++|.++|+.+||+.|
T Consensus        13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~----~~~g--~~~G~afV~f~~~~~A~~Ai~~l~g~~~   86 (105)
T 2nlw_A           13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP----EEDG--KTKGYIFLEYASPAHAVDAVKNADGYKL   86 (105)
T ss_dssp             SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC----CBTT--BSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred             CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee----CCCC--CeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence            3467999999999753     357999999999999999854    4676  8999999999999999999999999998


Q ss_pred             ccceeec-eeeeeeecCC
Q 013598          267 AFGKVQK-QIRCEMVNSS  283 (439)
Q Consensus       267 ~fgKVEK-~ikcE~~~~~  283 (439)
                      .+    + .|+++.+...
T Consensus        87 ~g----~~~l~V~~a~~~  100 (105)
T 2nlw_A           87 DK----QHTFRVNLFTDF  100 (105)
T ss_dssp             ST----TCEEEEECSCCC
T ss_pred             CC----CceEEEEEcchH
Confidence            73    4 5677766543

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=4.4e-14  Score=109.43  Aligned_cols=87  Identities=14%  Similarity=0.156  Sum_probs=72.2

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      .....-+|||+|||...+ +.+|+.+|..+|.|.+|++.  .++.+    .||||||+|.+.++|.++|+.+||+.|.  
T Consensus        11 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~i~--~~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~--   81 (103)
T 2cqi_A           11 DDGQPRTLYVGNLSRDVT-EVLILQLFSQIGPCKSCKMI--TEHTS----NDPYCFVEFYEHRDAAAALAAMNGRKIL--   81 (103)
T ss_dssp             CSCCCCEEEEESCCTTCC-HHHHHHHHHHHSCEEEEEEE--CCCCS----SCCEEEEEESSHHHHHHHHHHHTTEEET--
T ss_pred             CCCCCCEEEEeCCCccCC-HHHHHHHHHhcCCEeEEEEE--ecCCC----CCCEEEEEECCHHHHHHHHHHhCCCCcC--
Confidence            345678999999999865 88999999999999999844  44333    3999999999999999999999999987  


Q ss_pred             eeeceeeeeeecCCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSNS  287 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~~  287 (439)
                        -+.|+|+.+.......
T Consensus        82 --g~~l~V~~a~~~~~~~   97 (103)
T 2cqi_A           82 --GKEVKVNWATTPSSQK   97 (103)
T ss_dssp             --TEEEEEEECCCTTCCC
T ss_pred             --CCeEEEEECCCCcccc
Confidence              3678888887765443

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.54  E-value=8.1e-15  Score=111.41  Aligned_cols=81  Identities=21%  Similarity=0.236  Sum_probs=66.7

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      +..-+|||+|||...+ +.||+++|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.+   
T Consensus        13 ~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~~~--~~~~~~~g--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---   84 (95)
T 2ek1_A           13 PGPTVIKVQNMPFTVS-IDEILDFFYGYQVIPGSV--CLKYNEKG--MPTGEAMVAFESRDEATAAVIDLNDRPIGS---   84 (95)
T ss_dssp             --CEEEEEECCCTTCC-HHHHHHHTTTSCBCTTCC--EEEECTTS--CEEEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHHhcCCccceE--EEEeCCCC--CEeeEEEEEECCHHHHHHHHHHhCCCeECC---
Confidence            3458999999999865 889999999999998776  44556676  899999999999999999999999999874   


Q ss_pred             eceeeeeeec
Q 013598          272 QKQIRCEMVN  281 (439)
Q Consensus       272 EK~ikcE~~~  281 (439)
                       +.|+++.+.
T Consensus        85 -r~l~v~~a~   93 (95)
T 2ek1_A           85 -RKVKLSGPS   93 (95)
T ss_dssp             -EECEEECCC
T ss_pred             -cEEEEEecc
Confidence             455555543

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.54  E-value=2.2e-14  Score=107.82  Aligned_cols=72  Identities=14%  Similarity=0.235  Sum_probs=62.5

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ..+.-+|||+|||...+ +.+|+++|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+. +|+.|.+
T Consensus         8 ~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~-~~~~~~g   79 (87)
T 3s7r_A            8 EEDAGKMFVGGLSWDTS-KKDLKDYFTKFGEVVDCT--IKMDPNTG--RSRGFGFILFKDAASVEKVLDQ-KEHRLDG   79 (87)
T ss_dssp             CSCTTEEEEECCCTTCC-HHHHHHHHTTTSCEEEEE--EEECTTTC--CEEEEEEEEESSTHHHHHHHHS-SCEEETT
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHhCCCEEEEE--EeecCCCC--ccccEEEEEECCHHHHHHHHHh-CCCEECC
Confidence            35678999999999865 889999999999999998  45566676  8999999999999999999975 8887664

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=2.9e-14  Score=112.83  Aligned_cols=86  Identities=13%  Similarity=0.151  Sum_probs=72.8

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      ....-+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+. ||+.|.+  
T Consensus        24 ~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g--   95 (116)
T 1x4b_A           24 KEQFRKLFIGGLSFETT-EESLRNYYEQWGKLTDCV--VMRDPASK--RSRGFGFVTFSSMAEVDAAMAA-RPHSIDG--   95 (116)
T ss_dssp             HHHHTEEEEECCTTCCC-HHHHHHHHTSSCCCSEEE--EECCTTTS--SCCSEEEEECSSHHHHHHHHTS-CSEEETT--
T ss_pred             cCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEECCCCC--CcCceEEEEeCCHHHHHHHHHh-CCcEECC--
Confidence            34678999999999865 889999999999999998  55666686  8999999999999999999998 9999873  


Q ss_pred             eeceeeeeeecCCCCC
Q 013598          271 VQKQIRCEMVNSSSSN  286 (439)
Q Consensus       271 VEK~ikcE~~~~~S~~  286 (439)
                        +.|+|+.+..+...
T Consensus        96 --~~l~V~~a~~~~~~  109 (116)
T 1x4b_A           96 --RVVEPKRAVAREES  109 (116)
T ss_dssp             --EEEEEECCSSCCCC
T ss_pred             --EEEEEEECCCCccC
Confidence              56777777665543

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.53  E-value=1.5e-14  Score=123.75  Aligned_cols=81  Identities=12%  Similarity=0.226  Sum_probs=68.3

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCC--CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVP--GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vG--gvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ....+|||||||...+ +.+|+++|..+|  .|++|+  ...++.||  .|||||||+|.+.++|.++|+.+||..|.+ 
T Consensus        53 ~~~~~lfVgnLp~~~t-e~~L~~~F~~~G~i~v~~v~--i~~d~~tg--~skGfaFV~f~~~~~A~~Ai~~lng~~~~G-  126 (156)
T 3n9u_C           53 NRRAAVYVGSFSWWTT-DQQLIQVIRSIGVYDVVELK--FAENRANG--QSKGYAEVVVASENSVHKLLELLPGKVLNG-  126 (156)
T ss_dssp             ---CEEEEECCCTTCC-HHHHHHHHHHTTCCCEEEEE--EEECTTTC--CEEEEEEEEESCHHHHHHHHHHSTTCEETT-
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHHHHCCccEEEEE--EEecCCCC--ccceEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence            3568999999999865 889999999999  999998  66777787  999999999999999999999999999875 


Q ss_pred             eeeceeeeeeec
Q 013598          270 KVQKQIRCEMVN  281 (439)
Q Consensus       270 KVEK~ikcE~~~  281 (439)
                         +.|+|..+.
T Consensus       127 ---r~l~V~~a~  135 (156)
T 3n9u_C          127 ---EKVDVRPAT  135 (156)
T ss_dssp             ---EECEEEECC
T ss_pred             ---eEeEEEEcC
Confidence               345555543

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.53  E-value=1.6e-14  Score=108.25  Aligned_cols=69  Identities=16%  Similarity=0.173  Sum_probs=60.4

Q ss_pred             ccEEEEcCCCCCCc-----hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          194 GIRVRLLNLPKKKN-----IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       194 gvRVrVGNLPkk~n-----i~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      +-+|||+|||....     ...+|+.+|..+|.|.++++.    +.||  .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus         1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~----~~~g--~~~g~afV~f~~~~~A~~Ai~~lng~~~~g   74 (81)
T 2krb_A            1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP----EEDG--KTKGYIFLEYASPAHAVDAVKNADGYKLDK   74 (81)
T ss_dssp             CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC----CBTT--BCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred             CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec----CCCC--cEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence            35899999999853     257999999999999999844    4676  899999999999999999999999999874

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=1.1e-13  Score=108.40  Aligned_cols=85  Identities=22%  Similarity=0.197  Sum_probs=70.6

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ...+.-+|||+|||...+ +.+|+++|..+|.|.+|++.     .++  .+||||||+|.+.++|.++|+.+||..|.  
T Consensus        18 ~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~v~~~~i~-----~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~--   87 (109)
T 1x4a_A           18 AGNNDCRIYVGNLPPDIR-TKDIEDVFYKYGAIRDIDLK-----NRR--GGPPFAFVEFEDPRDAEDAVYGRDGYDYD--   87 (109)
T ss_dssp             CCCCSSEEEEESCCTTCC-HHHHHHHHGGGSCEEEEEEC-----CSS--SSSCCEEEEESCHHHHHHHHHHHTTCEET--
T ss_pred             CCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEEE-----ECC--CCCcEEEEEECCHHHHHHHHHHcCCCEEC--
Confidence            345678999999999865 88999999999999999842     232  57999999999999999999999999987  


Q ss_pred             eeeceeeeeeecCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~  286 (439)
                        -+.|+|+.+......
T Consensus        88 --g~~l~V~~a~~~~~~  102 (109)
T 1x4a_A           88 --GYRLRVEFPRSGRGT  102 (109)
T ss_dssp             --TEECEEECCCCCCCC
T ss_pred             --CeEEEEEEcccCCCC
Confidence              357788887765543

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.53  E-value=6e-15  Score=111.51  Aligned_cols=82  Identities=21%  Similarity=0.282  Sum_probs=66.4

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeecee
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQI  275 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~i  275 (439)
                      +|||+|||...+ +.+|+++|..+|.|.+++  ...++.||  .+||||||+|.+.+ |.++|+.+||..|.+    +.+
T Consensus         3 ~l~V~nLp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~-a~~a~~~l~g~~~~g----~~l   72 (90)
T 2ki2_A            3 NIYVGNLVYSAT-SEQVKELFSQFGKVFNVK--LIYDRETK--KPKGFGFVEMQEES-VSEAIAKLDNTDFMG----RTI   72 (90)
T ss_dssp             EEEEEEECTTSS-HHHHTTTHHHHTCCSEEE--ECCCSSSC--CCCEEEEEEECTTH-HHHHHHTSCSSCCSS----SSC
T ss_pred             EEEECCCCCCCC-HHHHHHHHHhcCCEEEEE--EEEcCCCC--CcceEEEEEECCHH-HHHHHHHhCCCEECC----eEE
Confidence            799999999865 889999999999999998  55666676  89999999999999 999999999999873    567


Q ss_pred             eeeeecCCCCCC
Q 013598          276 RCEMVNSSSSNS  287 (439)
Q Consensus       276 kcE~~~~~S~~~  287 (439)
                      +++.+.......
T Consensus        73 ~V~~a~~~~~~~   84 (90)
T 2ki2_A           73 RVTEANPKKSLE   84 (90)
T ss_dssp             SEEEC-------
T ss_pred             EEEEcCCCCCCC
Confidence            777776655443

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.53  E-value=4.1e-14  Score=112.47  Aligned_cols=88  Identities=10%  Similarity=0.143  Sum_probs=72.1

Q ss_pred             CCCccEEEEcCCCCCCchHHHHH---HHhccCCCeeEEeeccccCCCCCC-CcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLK---SAFKGVPGIINIIPVVSGNKKTKD-PICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~---~aFk~vGgvisIkpAv~~nrKTgD-p~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      .....+|||+|||...+ +.||+   ++|..+|.|.+|++  ..++.|+. ..+||||||+|.+.++|.++|+.+||+.|
T Consensus        12 ~~~~~~l~V~nLp~~~~-~~~l~~~~~~F~~~G~i~~v~i--~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~   88 (111)
T 2cpi_A           12 VVQKNLVFVVGLSQRLA-DPEVLKRPEYFGKFGKIHKVVI--NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV   88 (111)
T ss_dssp             CCCSSCEEEEEECTTTC-CHHHHHSTTTTTTTSCEEEEEE--ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred             ccCCCEEEEECCCCCCC-HHHHHHHHHHhhccCCEEEEEE--ecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence            34577999999999865 88999   99999999999984  44444431 25789999999999999999999999998


Q ss_pred             ccceeeceeeeeeecCCCC
Q 013598          267 AFGKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       267 ~fgKVEK~ikcE~~~~~S~  285 (439)
                      .    -+.|+|+.+..+..
T Consensus        89 ~----gr~l~V~~a~~k~~  103 (111)
T 2cpi_A           89 D----GRTLKASLGTTKYC  103 (111)
T ss_dssp             T----TEEEEEESCCCCSC
T ss_pred             C----CEEEEEEecccccc
Confidence            6    35788888877653

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.52  E-value=3.8e-14  Score=109.45  Aligned_cols=98  Identities=20%  Similarity=0.185  Sum_probs=74.6

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeecee
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQI  275 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~i  275 (439)
                      +|||+|||...+ +.+|+.+|..+|.|.+|+...  +       +||||||+|.+.++|.++|+.+||..|.+    +.+
T Consensus         2 ~l~V~nLp~~~t-~~~l~~~F~~~G~i~~v~i~~--~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l   67 (101)
T 2hvz_A            2 KVYVGNLGTGAG-KGELERAFSYYGPLRTVWIAR--N-------PPGFAFVEFEDPRDAEDAVRGLDGKVICG----SRV   67 (101)
T ss_dssp             EEEEECCCSSCS-HHHHHHHHHHHCCCSEEEEES--S-------SSSEEEEECSSHHHHHHHHHHHHHSCSSS----CCC
T ss_pred             EEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEEee--C-------CCCEEEEEECCHHHHHHHHHHHCCCeECC----cEE
Confidence            799999999865 889999999999999998432  2       59999999999999999999999999773    558


Q ss_pred             eeeeecCCCCCCCCCCCCCCCCCCCccccCCc
Q 013598          276 RCEMVNSSSSNSVDGHSSDDTSGYPKIKVYGF  307 (439)
Q Consensus       276 kcE~~~~~S~~~~~~~s~~s~~~~p~~~v~~~  307 (439)
                      +++.+...+...............|++-|-|+
T Consensus        68 ~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L   99 (101)
T 2hvz_A           68 RVELSTGMPRRSRFDRPPARRKLLEVLFNGPL   99 (101)
T ss_dssp             EEEESSSCCCSSCCCSCCCSCCCCSCCCSCCC
T ss_pred             EEEEccCCCCcccCCCCCccccCCCceecCCC
Confidence            88888777654443333333333444444444

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.52  E-value=3.7e-14  Score=117.09  Aligned_cols=85  Identities=20%  Similarity=0.296  Sum_probs=72.1

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ..+++-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||..|.+ 
T Consensus        42 ~~~~~~~l~V~nLp~~~t-e~~L~~~F~~~G~I~~v~--i~~d~~tg--~~~G~afV~F~~~~~A~~Ai~~lng~~i~g-  115 (129)
T 2kxn_B           42 NPDPNCCLGVFGLSLYTT-ERDLREVFSKYGPIADVS--IVYDQQSR--RSRGFAFVYFENVDDAKEAKERANGMELDG-  115 (129)
T ss_dssp             CCCCSSCBCEETCTTSCC-HHHHHHHHTTTSCEEEEE--EECCSSSS--CCCCEEEEEESCHHHHHHHHHHHTTCCSSS-
T ss_pred             CCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCEECC-
Confidence            345788999999999865 889999999999999998  55666676  899999999999999999999999999874 


Q ss_pred             eeeceeeeeeecCC
Q 013598          270 KVQKQIRCEMVNSS  283 (439)
Q Consensus       270 KVEK~ikcE~~~~~  283 (439)
                         +.|+|+.+...
T Consensus       116 ---~~l~V~~a~~~  126 (129)
T 2kxn_B          116 ---RRIRVDFSITK  126 (129)
T ss_dssp             ---SCCEESCCSSS
T ss_pred             ---EEEEEEEecCC
Confidence               56666666543

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.52  E-value=2.8e-14  Score=111.27  Aligned_cols=83  Identities=19%  Similarity=0.343  Sum_probs=66.5

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCC-CCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNK-KTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nr-KTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ....+-+|||+|||...+ +.+|+.+|..+| |.+++  ...++ .||  .+||||||+|.+.++|.++| .+||+.|.+
T Consensus        15 ~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G-i~~v~--i~~~~~~~g--~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g   87 (100)
T 2j76_E           15 PKSPPYTAFLGNLPYDVT-EESIKEFFRGLN-ISAVR--LPREPSNPE--RLKGFGYAEFEDLDSLLSAL-SLNEESLGN   87 (100)
T ss_dssp             -----CEEEESCCSSCCS-SSHHHHHSCSSC-EEEEE--CSCCTTTTC--CCCSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred             CCCCCcEEEEeCCCCCCC-HHHHHHHHHhcC-CeEEE--EEecCCcCC--ccCeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence            345778999999999865 889999999999 99998  45555 465  89999999999999999999 899999874


Q ss_pred             ceeeceeeeeeecCC
Q 013598          269 GKVQKQIRCEMVNSS  283 (439)
Q Consensus       269 gKVEK~ikcE~~~~~  283 (439)
                          +.++++.+..+
T Consensus        88 ----~~l~V~~a~~~   98 (100)
T 2j76_E           88 ----RRIRVDVADQA   98 (100)
T ss_dssp             ----BCCCCEECCCS
T ss_pred             ----eEEEEEeccCC
Confidence                55677776544

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.52  E-value=5.8e-14  Score=116.57  Aligned_cols=88  Identities=18%  Similarity=0.217  Sum_probs=75.2

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...++.-+|||+|||..++ +.+|+++|..+|.|.+|+  ...++.|+  .+||||||+|.+.++|.++|+.|||..|. 
T Consensus        34 ~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-  107 (156)
T 1h2v_Z           34 KLLKKSCTLYVGNLSFYTT-EEQIYELFSKSGDIKKII--MGLDKMKK--TACGFCFVEYYSRADAENAMRYINGTRLD-  107 (156)
T ss_dssp             TTTTTCCEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHTTTSEET-
T ss_pred             ccCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence            3345788999999999865 889999999999999998  55566676  89999999999999999999999999986 


Q ss_pred             ceeeceeeeeeecCCCC
Q 013598          269 GKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~  285 (439)
                         .+.|+|+.+.....
T Consensus       108 ---g~~l~V~~a~~~~~  121 (156)
T 1h2v_Z          108 ---DRIIRTDWDAGFKE  121 (156)
T ss_dssp             ---TEECEEEEESCCCT
T ss_pred             ---CeEEEEEECCCCCC
Confidence               46788888876544

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.52  E-value=4.7e-14  Score=107.22  Aligned_cols=82  Identities=15%  Similarity=0.113  Sum_probs=68.1

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ..+..-+|||+|||...+ +.+|+++|..+|.|.+|++..  ++ +  +.+||||||+|.+.++|.++|+.+||+.|.+ 
T Consensus        12 ~~~~~~~l~v~nlp~~~~-~~~l~~~F~~~G~i~~v~i~~--~~-~--g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-   84 (95)
T 2ywk_A           12 QEEADRTVFVGNLEARVR-EEILYELFLQAGPLTKVTICK--DR-E--GKPKSFGFVCFKHPESVSYAIALLNGIRLYG-   84 (95)
T ss_dssp             CTTGGGEEEEECCCTTCC-HHHHHHHHGGGSCEEEEEEEE--CT-T--SCEEEEEEEEESSTHHHHHHHHHHTTCEETT-
T ss_pred             CCCCCCEEEEECCCCCCC-HHHHHHHHHhcCCEEEEEEEE--CC-C--CCCceEEEEEECCHHHHHHHHHHhCCCEECC-
Confidence            345678999999999865 889999999999999998443  33 3  3889999999999999999999999999874 


Q ss_pred             eeeceeeeeeec
Q 013598          270 KVQKQIRCEMVN  281 (439)
Q Consensus       270 KVEK~ikcE~~~  281 (439)
                         +.|+++.+.
T Consensus        85 ---~~l~V~~a~   93 (95)
T 2ywk_A           85 ---RPINVSGPS   93 (95)
T ss_dssp             ---EECEEECCC
T ss_pred             ---CEEEEEEcC
Confidence               556666553

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=1.4e-13  Score=106.63  Aligned_cols=85  Identities=27%  Similarity=0.420  Sum_probs=69.8

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      ..+.-+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+  +|+.|.+  
T Consensus        12 ~~~~~~l~v~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~--~~~~~~g--   82 (103)
T 2cqg_A           12 VQKTSDLIVLGLPWKTT-EQDLKEYFSTFGEVLMVQ--VKKDLKTG--HSKGFGFVRFTEYETQVKVMS--QRHMIDG--   82 (103)
T ss_dssp             CCCCCCEEEESCCSSCC-HHHHHHHHGGGSCEEEEE--EEECSSSC--SEEEEEEEEESSHHHHHHHHH--SCEEETT--
T ss_pred             cCCCCEEEEEcCCCcCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--CccceEEEEECCHHHHHHHHH--cCCeeCC--
Confidence            34667999999999865 889999999999999998  55666676  899999999999999999999  5776553  


Q ss_pred             eeceeeeeeecCCCCC
Q 013598          271 VQKQIRCEMVNSSSSN  286 (439)
Q Consensus       271 VEK~ikcE~~~~~S~~  286 (439)
                        +.|+|+.+......
T Consensus        83 --~~l~v~~a~~~~~~   96 (103)
T 2cqg_A           83 --RWCDCKLPNSKQSQ   96 (103)
T ss_dssp             --EEEEEECCCTTCCC
T ss_pred             --eEEEEEecCCCCcC
Confidence              46777777665443

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.51  E-value=1.5e-13  Score=108.45  Aligned_cols=88  Identities=18%  Similarity=0.158  Sum_probs=71.6

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .....+.+|||+|||..++ ++||+++|..+|.|..+++.  .+         |||||+|.+.++|.++|+.|||+.|.+
T Consensus        10 ~~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~~~i~--~~---------g~afV~f~~~~~a~~Ai~~l~g~~~~g   77 (108)
T 1x4c_A           10 PSRRSENRVVVSGLPPSGS-WQDLKDHMREAGDVCYADVY--RD---------GTGVVEFVRKEDMTYAVRKLDNTKFRS   77 (108)
T ss_dssp             CCCSCCCEEEEESCCSSCC-HHHHHHHHGGGSCEEEEEEE--TT---------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred             CCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEeEEEEe--cC---------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence            3345688999999999865 88999999999999999732  22         999999999999999999999999875


Q ss_pred             ceee-ceeeeeeecCCCCCCC
Q 013598          269 GKVQ-KQIRCEMVNSSSSNSV  288 (439)
Q Consensus       269 gKVE-K~ikcE~~~~~S~~~~  288 (439)
                      ..+. +.|+++.+...+....
T Consensus        78 ~~~~~~~i~V~~a~~~~~~~~   98 (108)
T 1x4c_A           78 HEGETAYIRVKVDGPRSPSYG   98 (108)
T ss_dssp             TTSCEEEEEEEESSCCSCCCC
T ss_pred             CcCcceEEEEEeCCCCCCCCC
Confidence            2212 6788888887665543

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=1.2e-13  Score=105.43  Aligned_cols=82  Identities=16%  Similarity=0.271  Sum_probs=70.6

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      .....-+|||+|||...+ +.+|+.+|..+|.|.+|+            +.||||||+|.+.++|.++|+.+||+.|.  
T Consensus         6 ~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~v~~v~------------~~~~~afV~f~~~~~a~~A~~~l~g~~~~--   70 (92)
T 2dgt_A            6 SGKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECD------------IVKDYAFVHMERAEDAVEAIRGLDNTEFQ--   70 (92)
T ss_dssp             CCCSSEEEEEESCCSSCC-HHHHHHHHHTTSCCCEEE------------ECSSEEEEEESCHHHHHHHHHHHTTEEET--
T ss_pred             CCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE------------EECCEEEEEECCHHHHHHHHHHhCCCeeC--
Confidence            345788999999999865 889999999999999997            33779999999999999999999999987  


Q ss_pred             eeeceeeeeeecCCCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~~~  288 (439)
                        .+.++++.+..+....+
T Consensus        71 --g~~l~V~~a~~~~~~~~   87 (92)
T 2dgt_A           71 --GKRMHVQLSTSRLRTAS   87 (92)
T ss_dssp             --TEEEEEEESSCCCSCCC
T ss_pred             --CcEEEEEEccCCCCCCC
Confidence              46788888877666554

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=9.1e-14  Score=105.51  Aligned_cols=82  Identities=18%  Similarity=0.216  Sum_probs=68.9

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      ...+.+|||+|||...+ +.||+.+|..+ +|.+|++.  .+ .||  .+||||||+|.+.++|.++|+ +||..|.+  
T Consensus         7 ~~~~~~l~v~nLp~~~t-~~~l~~~F~~~-~i~~v~i~--~~-~~g--~~~g~afV~f~~~~~a~~A~~-~~g~~~~g--   76 (91)
T 2dgw_A            7 GTTCHTVKLRGAPFNVT-EKNVMEFLAPL-KPVAIRIV--RN-AHG--NKTGYIFVDFSNEEEVKQALK-CNREYMGG--   76 (91)
T ss_dssp             CCCCCEEEEECCCSSCC-HHHHHHHHTTS-CCSEEEEE--EC-TTS--CEEEEEEEECSSHHHHHHHHH-SCSEEETT--
T ss_pred             CCCccEEEEECCCCCCC-HHHHHHHHhhC-CceEEEEE--EC-CCC--CCceEEEEEECCHHHHHHHHH-hCCceeCC--
Confidence            34678999999999865 88999999999 99999844  34 465  889999999999999999999 99999873  


Q ss_pred             eeceeeeeeecCCC
Q 013598          271 VQKQIRCEMVNSSS  284 (439)
Q Consensus       271 VEK~ikcE~~~~~S  284 (439)
                        +.|++..+....
T Consensus        77 --r~i~v~~a~~~~   88 (91)
T 2dgw_A           77 --RYIEVFREKSGP   88 (91)
T ss_dssp             --EEEEEEEESSCC
T ss_pred             --cEEEEEECCcCC
Confidence              467777776653

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=1.3e-13  Score=106.41  Aligned_cols=85  Identities=22%  Similarity=0.294  Sum_probs=69.4

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ....+.-+|||+|||...+ +.+|+++|..+|.| +|    ..+ .|+  .+||||||+|.+.++|.++|+.+||+.|. 
T Consensus        10 ~~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~g~v-~~----~~~-~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~-   79 (101)
T 2fc9_A           10 TWSGESKTLVLSNLSYSAT-EETLQEVFEKATFI-KV----PQN-QNG--KSKGYAFIEFASFEDAKEALNSCNKREIE-   79 (101)
T ss_dssp             CCSCCCSEEEEESCCTTCC-HHHHHHHCSSCSEE-EC----CBC-SSS--CBCSEEEEECSSHHHHHHHHHHTSSEEET-
T ss_pred             cCCCCCCEEEEeCCCCCCC-HHHHHHHHHhCCEE-EE----EEC-CCC--CEeeEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence            3445789999999999865 88999999999976 32    222 454  89999999999999999999999999987 


Q ss_pred             ceeeceeeeeeecCCCCC
Q 013598          269 GKVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~~  286 (439)
                         -+.|+|+.+..+...
T Consensus        80 ---g~~l~v~~a~~~~~~   94 (101)
T 2fc9_A           80 ---GRAIRLELQGPRGSP   94 (101)
T ss_dssp             ---TEEEEEEECSSCCCC
T ss_pred             ---CeEEEEEEcCCCCCC
Confidence               466888888776443

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=1.1e-13  Score=108.93  Aligned_cols=80  Identities=21%  Similarity=0.255  Sum_probs=65.6

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeE-EeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIIN-IIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvis-IkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      .....+|||+|||...+ +.||+++|..+|.|.. |+  ...+ +||  .+||||||+|.+.++|.++|++ ||+.|.+ 
T Consensus        12 ~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~v~~~v~--i~~~-~~g--~~~G~afV~F~~~~~a~~A~~~-~~~~~~g-   83 (104)
T 1wg5_A           12 TANDGFVRLRGLPFGCS-KEEIVQFFSGLEIVPNGMT--LPVD-FQG--RSTGEAFVQFASQEIAEKALKK-HKERIGH-   83 (104)
T ss_dssp             CSCCCEEEEESCCTTCC-HHHHHHHTTTCCEEEEEEE--CCBC-SSS--CBCSEEEEEESSHHHHHHHHTT-TTCCSSS-
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCcceeEE--EEEC-CCC--CcceEEEEEECCHHHHHHHHHh-CcchhCC-
Confidence            35678999999999865 8899999999999887 76  3344 576  8999999999999999999998 9988764 


Q ss_pred             eeeceeeeeeec
Q 013598          270 KVQKQIRCEMVN  281 (439)
Q Consensus       270 KVEK~ikcE~~~  281 (439)
                         +.|++..+.
T Consensus        84 ---r~i~v~~~~   92 (104)
T 1wg5_A           84 ---RYIEIFKSS   92 (104)
T ss_dssp             ---SCCEEEEEC
T ss_pred             ---cEEEEEECC
Confidence               345555543

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=8.5e-14  Score=107.32  Aligned_cols=85  Identities=20%  Similarity=0.296  Sum_probs=69.3

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ..++.-+|||+|||...+ +.+|+++|.+++   .|+  ...++.|+  .+||||||+|.+.++|.++|+.|||+.|.+ 
T Consensus        11 ~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~~---~~~--~~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-   81 (102)
T 2fc8_A           11 RSQPSKTLFVKGLSEDTT-EETLKESFDGSV---RAR--IVTDRETG--SSKGFGFVDFNSEEDAKAAKEAMEDGEIDG-   81 (102)
T ss_dssp             SSCCCSSEEEECCCTTCC-HHHHHHTSTTCS---EEE--EEECSSSC--SEEEEEEEECSSHHHHHHHHHHHTTCEETT-
T ss_pred             CCCCCCEEEEeCCCCccC-HHHHHHHhcCCe---EEE--EEecCCCC--CcCcEEEEEECCHHHHHHHHHHhCCCeECC-
Confidence            345778999999999865 889999999774   444  34566676  899999999999999999999999999873 


Q ss_pred             eeeceeeeeeecCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~  286 (439)
                         +.|+|+.+......
T Consensus        82 ---~~l~V~~a~~~~~~   95 (102)
T 2fc8_A           82 ---NKVTLDWAKPKGEG   95 (102)
T ss_dssp             ---EECEEEECCCCCSS
T ss_pred             ---eEEEEEEecCCCCC
Confidence               56888888765543

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=2e-13  Score=105.37  Aligned_cols=81  Identities=14%  Similarity=0.275  Sum_probs=68.8

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccC--CCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGV--PGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~v--GgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      ...+..-+|||+|||...+ +.+|+.+|..+  |.|.+++            ++||||||+|.+.++|.++|+.+||..|
T Consensus        10 ~~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~g~g~v~~~~------------~~~g~afV~f~~~~~A~~A~~~l~g~~~   76 (99)
T 2cpd_A           10 DTMSSVKILYVRNLMLSTS-EEMIEKEFNNIKPGAVERVK------------KIRDYAFVHFSNREDAVEAMKALNGKVL   76 (99)
T ss_dssp             SCSSCCCEEEEESCCTTCC-HHHHHHHHHTTSTTCEEEEE------------ECSSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred             cccCCcCEEEEeCCCCCCC-HHHHHHHHHhcCCcceEEEE------------EeCCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence            4445778999999999865 88999999999  8888886            4589999999999999999999999998


Q ss_pred             ccceeeceeeeeeecCCCCC
Q 013598          267 AFGKVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       267 ~fgKVEK~ikcE~~~~~S~~  286 (439)
                      .    -+.|+|+.+......
T Consensus        77 ~----g~~l~v~~a~~~~~~   92 (99)
T 2cpd_A           77 D----GSPIEVTLAKPVDKD   92 (99)
T ss_dssp             T----TEEEEEECCCCCCCC
T ss_pred             C----CcEEEEEECCCCCCC
Confidence            7    357788887766543

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.50  E-value=2.5e-14  Score=104.65  Aligned_cols=67  Identities=16%  Similarity=0.239  Sum_probs=59.4

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      +|||+|||...+ +.+|+.+|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.+| +.|.+
T Consensus         2 ~l~v~nlp~~~t-~~~l~~~F~~~G~v~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~a~~~~~-~~~~g   68 (77)
T 1uaw_A            2 KMFIGGLSWQTT-QEGLREYFGQFGEVKECL--VMRDPLTK--RSRGFGFVTFMDQAGVDKVLAQSR-HELDS   68 (77)
T ss_dssp             CEEEESCCSSCC-SHHHHHHHTTTSCCCCEE--EECCCCSS--SCSSEEEECCCCTTHHHHHHHTTT-CCCSS
T ss_pred             EEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EecCCCCC--CcCceEEEEEcCHHHHHHHHHhCC-CccCC
Confidence            799999999865 889999999999999998  45566676  899999999999999999999999 77664

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=6.3e-14  Score=110.62  Aligned_cols=81  Identities=17%  Similarity=0.238  Sum_probs=68.9

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      .+.-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++| .+||+.|.+   
T Consensus        23 ~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---   93 (114)
T 2cq4_A           23 RDARTVFCMQLAARIR-PRDLEDFFSAVGKVRDVR--IISDRNSR--RSKGIAYVEFCEIQSVPLAI-GLTGQRLLG---   93 (114)
T ss_dssp             HHHTEEEEESCCTTCC-HHHHHHHHTTTSCEEEEE--ECCSCCSS--SCCCCEEEEESCGGGHHHHH-HHTTEEETT---
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHHhCCCEeEEE--EEecCCCC--ccCcEEEEEeCcHHHHHHHH-HcCCCEeCC---
Confidence            3567999999999865 889999999999999998  55666676  89999999999999999999 999999874   


Q ss_pred             eceeeeeeecC
Q 013598          272 QKQIRCEMVNS  282 (439)
Q Consensus       272 EK~ikcE~~~~  282 (439)
                       +.|+|+.+..
T Consensus        94 -~~l~V~~a~~  103 (114)
T 2cq4_A           94 -VPIIVQASQA  103 (114)
T ss_dssp             -EEEEEEEHHH
T ss_pred             -eEEEEEecCC
Confidence             4566665543

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=4.4e-14  Score=113.91  Aligned_cols=74  Identities=19%  Similarity=0.200  Sum_probs=63.1

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ....++.+|||+|||...+ +.||+.+|..+|.|..+.  .+.++.||  .+||||||+|.+.++|.++|+ +||+.|.+
T Consensus        20 ~~~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~v~~~~--~~~~~~~g--~~~G~afV~F~~~~~a~~Al~-~~g~~~~g   93 (124)
T 1wel_A           20 SPHEAGFCVYLKGLPFEAE-NKHVIDFFKKLDIVEDSI--YIAYGPNG--KATGEGFVEFRNEADYKAALC-RHKQYMGN   93 (124)
T ss_dssp             SCCCCCCEEEEECCCTTCC-HHHHHHHSCSSCBCTTTC--EEEECTTS--SEEEEEEEEBSSSHHHHHHHT-SCSBCSTT
T ss_pred             CCCCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCccceE--EEEECCCC--CCCeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence            4456789999999999865 889999999999987643  34455576  899999999999999999999 99999875

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.50  E-value=6.9e-14  Score=111.53  Aligned_cols=83  Identities=17%  Similarity=0.230  Sum_probs=70.1

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      +.-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++| .+||+.|.+    
T Consensus        35 ~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----  104 (124)
T 2jwn_A           35 DKRSVYVGNVDYGST-AQDLEAHFSSCGSINRIT--ILCDKFSG--HPKGYAYIEFAERNSVDAAV-AMDETVFRG----  104 (124)
T ss_dssp             HHTEEEEEEECTTCC-HHHHHHHHHTTSCEEEEE--EEEECTTS--SCEEEEEEEESSHHHHHHHH-TTTTCEETT----
T ss_pred             CCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEecCCCC--CcccEEEEEECCHHHHHHHH-hcCCCeECC----
Confidence            568999999999865 889999999999999998  44555676  88999999999999999999 799999874    


Q ss_pred             ceeeeeeecCCCC
Q 013598          273 KQIRCEMVNSSSS  285 (439)
Q Consensus       273 K~ikcE~~~~~S~  285 (439)
                      +.|+++.+.....
T Consensus       105 ~~l~V~~a~~~~~  117 (124)
T 2jwn_A          105 RTIKVLPKRTNMP  117 (124)
T ss_dssp             EECEEEESSCCCS
T ss_pred             eEEEEEECCCCCC
Confidence            5677777665433

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.50  E-value=1.7e-13  Score=106.71  Aligned_cols=82  Identities=16%  Similarity=0.225  Sum_probs=69.7

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      ....-+|||+|||...+ +.+|+++|..+|.|.+++            +.||||||+|.+.++|.++|+.|||+.|.   
T Consensus         8 ~~~~~~l~V~nl~~~~t-~~~l~~~F~~~G~i~~v~------------~~~~~afV~f~~~~~a~~A~~~l~g~~~~---   71 (103)
T 2dgu_A            8 MAKVKVLFVRNLANTVT-EEILEKAFSQFGKLERVK------------KLKDYAFIHFDERDGAVKAMEEMNGKDLE---   71 (103)
T ss_dssp             CCCCCCEEEECCCTTCC-HHHHHHHHHHHSCEEEEE------------ECSSCEEEEESSHHHHHHHHHHHTTEEET---
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE------------EECCEEEEEeCCHHHHHHHHHHHCCCccC---
Confidence            34567999999999865 889999999999999997            34789999999999999999999999987   


Q ss_pred             eeceeeeeeecCCCCCCCC
Q 013598          271 VQKQIRCEMVNSSSSNSVD  289 (439)
Q Consensus       271 VEK~ikcE~~~~~S~~~~~  289 (439)
                       -+.|+|+.+.........
T Consensus        72 -g~~l~v~~a~~~~~~~~~   89 (103)
T 2dgu_A           72 -GENIEIVFAKPPDQKRKE   89 (103)
T ss_dssp             -TEEEEEEECCCCCCCCCC
T ss_pred             -CCEEEEEEcCCCcccchh
Confidence             357888888776655443

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.49  E-value=1.6e-13  Score=105.92  Aligned_cols=85  Identities=19%  Similarity=0.237  Sum_probs=71.5

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ..++.-+|||+|||...+ +.+|+.+|..+|.|.+|++.  .+        ||||||+|.+.++|.++|+.+||+.|.+ 
T Consensus        11 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~~~--~~--------kg~afV~f~~~~~a~~a~~~l~g~~~~g-   78 (99)
T 2cpj_A           11 TFTQRSRLFVGNLPPDIT-EEEMRKLFEKYGKAGEVFIH--KD--------KGFGFIRLETRTLAEIAKVELDNMPLRG-   78 (99)
T ss_dssp             CCCCTTEEEEESCCTTCC-HHHHHHHTSTTCCCSEEEEE--TT--------TTEEEEECSSSHHHHHHHHHHTTCCBTT-
T ss_pred             cCCCCCEEEEeCCCCCCC-HHHHHHHHhhcCCeEEEEEe--cC--------CCEEEEEECCHHHHHHHHHHhCCCEeCC-
Confidence            345678999999999865 88999999999999999843  22        8999999999999999999999999873 


Q ss_pred             eeeceeeeeeecCCCCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSNSVD  289 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~~~~  289 (439)
                         +.++|+.+.........
T Consensus        79 ---~~l~v~~a~~~~~~~~g   95 (99)
T 2cpj_A           79 ---KQLRVRFACHSASLTSG   95 (99)
T ss_dssp             ---BCCEEEESSCCSCCCCC
T ss_pred             ---ceEEEEEcCCCCCCCCC
Confidence               67888888776655543

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.49  E-value=1.1e-13  Score=110.21  Aligned_cols=85  Identities=19%  Similarity=0.228  Sum_probs=67.6

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ...++-+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+ |+.|.+ 
T Consensus        21 ~~~~~~~lfV~nLp~~~t-e~~L~~~F~~~G~i~~v~--i~~~~~tg--~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g-   93 (109)
T 2rs2_A           21 MGSSGCKMFIGGLSWQTT-QEGLREYFGQFGEVKECL--VMRDPLTK--RSRGFGFVTFMDQAGVDKVLAQS-RHELDS-   93 (109)
T ss_dssp             -----CCEEEESCCTTCC-HHHHHHHHTTTSCEEEEE--ECCCTTTC--CCTTCEEEEESSHHHHHHHHHSS-CEEETT-
T ss_pred             cCCCCCEEEEeCCCCCCC-HHHHHHHHHccCCeEEEE--EEECCCCC--CcCcEEEEEECCHHHHHHHHHHC-CCcCCC-
Confidence            335678999999999865 889999999999999998  56677786  89999999999999999999986 566553 


Q ss_pred             eeeceeeeeeecCCC
Q 013598          270 KVQKQIRCEMVNSSS  284 (439)
Q Consensus       270 KVEK~ikcE~~~~~S  284 (439)
                         +.++++.+..+.
T Consensus        94 ---~~l~V~~a~~~~  105 (109)
T 2rs2_A           94 ---KTIDPKVAFPRR  105 (109)
T ss_dssp             ---EEEEEEECCCCC
T ss_pred             ---EEEEEEEccCCC
Confidence               567777776544

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.49  E-value=2.6e-14  Score=104.42  Aligned_cols=67  Identities=16%  Similarity=0.356  Sum_probs=59.6

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ||||+|||...+ +.+|+++|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+. +|+.|.+
T Consensus         1 ~l~v~nLp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g   67 (75)
T 1iqt_A            1 KIFVGGLSPDTP-EEKIREYFGGFGEVESIE--LPMDNKTN--KRRGFCFITFKEEEPVKKIMEK-KYHNVGL   67 (75)
T ss_dssp             CEEESCCCSSCC-HHHHHHHHHHHSCCSEEC--CCCSCCCS--SSCCCEEEECSSSHHHHHHHTT-SSCCBTT
T ss_pred             CEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--CcCCEEEEEECCHHHHHHHHHh-CCCeECC
Confidence            699999999865 889999999999999998  55666676  8999999999999999999996 8888775

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.49  E-value=1.3e-14  Score=111.96  Aligned_cols=82  Identities=18%  Similarity=0.249  Sum_probs=69.3

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ....+|||+|||...+ +.+|+.+|..+|.|.. .  ...++.||  .+||||||+|.+.++|.++|+ +||..|.    
T Consensus        15 ~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~v~~-~--~~~~~~~g--~~~g~afV~f~~~~~a~~A~~-l~g~~~~----   83 (101)
T 1fj7_A           15 TTPFNLFIGNLNPNKS-VAELKVAISELFAKND-L--AVVDVRTG--TNRKFGYVDFESAEDLEKALE-LTGLKVF----   83 (101)
T ss_dssp             SCSEEEEEECCCTTSC-HHHHHHHHHHHHHHHT-C--CCCEEEEE--TTTTEEEEEESSHHHHHHHHH-GGGCCBT----
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHHHhCCcce-E--EEecCCCC--CcCcEEEEEECCHHHHHHHHh-cCCcEEC----
Confidence            4578999999999865 8899999999999887 3  55666676  899999999999999999999 9999987    


Q ss_pred             eceeeeeeecCCC
Q 013598          272 QKQIRCEMVNSSS  284 (439)
Q Consensus       272 EK~ikcE~~~~~S  284 (439)
                      -+.|+++.+..+.
T Consensus        84 g~~l~V~~a~~~~   96 (101)
T 1fj7_A           84 GNEIKLEKPKGRD   96 (101)
T ss_dssp             TBCCEEECCSCCC
T ss_pred             CcEEEEEEcCCCC
Confidence            3567777776543

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.49  E-value=5.8e-14  Score=116.48  Aligned_cols=86  Identities=17%  Similarity=0.315  Sum_probs=73.3

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      .++-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||..|.+   
T Consensus        45 ~~~~~l~V~nLp~~~t-e~~L~~~F~~~G~i~~v~--i~~~~~~g--~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g---  116 (135)
T 2lea_A           45 EGMTSLKVDNLTYRTS-PDTLRRVFEKYGRVGDVY--IPRDRYTK--ESRGFAFVRFHDKRDAEDAMDAMDGAVLDG---  116 (135)
T ss_dssp             GGCCCEEEECCCSSCH-HHHHHHHHGGGSCCSEEE--CCCCSSSS--SCCSCCEEECSCHHHHHHHHTTTTTCCSSS---
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEecCCCC--ccceEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence            4577999999999854 889999999999999998  55666676  899999999999999999999999999873   


Q ss_pred             eceeeeeeecCCCCC
Q 013598          272 QKQIRCEMVNSSSSN  286 (439)
Q Consensus       272 EK~ikcE~~~~~S~~  286 (439)
                       +.|+|+.+....+.
T Consensus       117 -~~l~V~~a~~~~~~  130 (135)
T 2lea_A          117 -RELRVQMARYGRPP  130 (135)
T ss_dssp             -SCCEEEECCCCCCC
T ss_pred             -EEEEEEECCCCCCC
Confidence             57788887765443

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.49  E-value=9e-14  Score=107.39  Aligned_cols=81  Identities=21%  Similarity=0.306  Sum_probs=67.0

Q ss_pred             CCCCccEEEEcCCCC-CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          190 DMPSGIRVRLLNLPK-KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       190 ~~~dgvRVrVGNLPk-k~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ..+++-+|||+|||. ..+ +.+|+.+|..+|.|.+|++            .||||||+|.+.++|.++|+.+||..|. 
T Consensus         6 ~~~~~~~l~V~nlp~~~~t-~~~l~~~F~~~G~v~~v~i------------~~g~afV~f~~~~~A~~A~~~l~g~~~~-   71 (96)
T 2kvi_A            6 NIPPKSRLFIGNLPLKNVS-KEDLFRIFSPYGHIMQINI------------KNAFGFIQFDNPQSVRDAIECESQEMNF-   71 (96)
T ss_dssp             ---CCEEEEEESSTTSCCC-HHHHHHHHTTTCCCCEEEE------------ETTEEEEEESCHHHHHHHHHHHTCSSCB-
T ss_pred             cCCCCCEEEEeCCCcccCC-HHHHHHHHHhcCCEEEEEE------------eCCEEEEEECCHHHHHHHHHHcCCCeeC-
Confidence            356788999999997 754 8899999999999999984            3899999999999999999999999987 


Q ss_pred             ceeeceeeeeeecCCCCCC
Q 013598          269 GKVQKQIRCEMVNSSSSNS  287 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~~~  287 (439)
                         .+.++|+.+.......
T Consensus        72 ---g~~l~V~~a~~~~~~~   87 (96)
T 2kvi_A           72 ---GKKLILEVSSSNARPQ   87 (96)
T ss_dssp             ---TTTBCEEEEECCCC--
T ss_pred             ---CcEEEEEEcCcCCCCC
Confidence               4677888887665443

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.49  E-value=5.9e-14  Score=107.00  Aligned_cols=83  Identities=22%  Similarity=0.263  Sum_probs=69.5

Q ss_pred             CCCccEEEEcCCCCCCchHHHHH----HHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLK----SAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~----~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      .+++-+|||+|||...+ +.+|+    .+|..+|.|.+|+..     +||  .+||||||+|.+.++|.++|+.+||..|
T Consensus         5 ~~~~~~l~V~nLp~~~~-~~~l~~~l~~~f~~~G~i~~v~i~-----~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~   76 (97)
T 1nu4_A            5 TRPNHTIYINNLNEKIK-KDELKKSLHAIFSRFGQILDILVS-----RSL--KMRGQAFVIFKEVSSATNALRSMQGFPF   76 (97)
T ss_dssp             -CCCSEEEEESCCTTSC-HHHHHHHHHHHHGGGSCEEEEECC-----HHH--HHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhCCCEEEEEEE-----cCC--CcCcEEEEEeCCHHHHHHHHHHhCCCEE
Confidence            45778999999999865 77888    999999999999844     243  7899999999999999999999999998


Q ss_pred             ccceeeceeeeeeecCCCC
Q 013598          267 AFGKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       267 ~fgKVEK~ikcE~~~~~S~  285 (439)
                      .+    +.++++.+...+.
T Consensus        77 ~g----~~l~v~~a~~~~~   91 (97)
T 1nu4_A           77 YD----KPMRIQYAKTDSD   91 (97)
T ss_dssp             TT----EECEEEECSSCCT
T ss_pred             CC----cEEEEEEccCCCc
Confidence            63    6678887766543

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=7.4e-14  Score=111.44  Aligned_cols=81  Identities=20%  Similarity=0.229  Sum_probs=66.4

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCe-eEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGI-INIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgv-isIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...+..+|||+|||...+ +.||+++|..+|.| .+|+  ...++ ||  .+||||||+|.+.++|.++|+. ||+.|.+
T Consensus        11 ~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~g~v~~~v~--i~~d~-~g--~~~G~afV~F~~~~~a~~Al~~-~~~~~~g   83 (114)
T 2cpy_A           11 VNSAKVCAHITNIPFSIT-KMDVLQFLEGIPVDENAVH--VLVDN-NG--QGLGQALVQFKNEDDARKSERL-HRKKLNG   83 (114)
T ss_dssp             CCSCCCEEEEESCCTTSC-HHHHHHHTTTSCCCSTTEE--ECCCT-TS--SCSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred             CCCCccEEEEeCcCCcCC-HHHHHHHHHhCCCcCCeEE--EEECC-CC--CcceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence            345678999999999865 88999999999998 6676  44555 65  8999999999999999999998 9999875


Q ss_pred             ceeeceeeeeeec
Q 013598          269 GKVQKQIRCEMVN  281 (439)
Q Consensus       269 gKVEK~ikcE~~~  281 (439)
                          +.|+|+.+.
T Consensus        84 ----r~i~v~~a~   92 (114)
T 2cpy_A           84 ----REAFVHVVT   92 (114)
T ss_dssp             ----EEEEEEEEC
T ss_pred             ----eEEEEEECC
Confidence                445555543

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.6e-13  Score=104.24  Aligned_cols=79  Identities=19%  Similarity=0.277  Sum_probs=67.9

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ..+.+-+|||+|||...+ +.+|+.+|..+|.|.+|+            ++||||||+|.+.++|.++|+.+||..|.  
T Consensus         5 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~v~~~~------------~~~~~afV~f~~~~~a~~A~~~l~g~~~~--   69 (90)
T 2dnp_A            5 SSGNTWKIFVGNVSAACT-SQELRSLFERRGRVIECD------------VVKDYAFVHMEKEADAKAAIAQLNGKEVK--   69 (90)
T ss_dssp             SSCCSCCEEEESCCTTCC-HHHHHHHHHHHSCEEEEE------------ECSSCEEEEESCHHHHHHHHHHHTTCEET--
T ss_pred             CCCCCCEEEEeCCCCCCC-HHHHHHHHHcCCCEEEEE------------EECCEEEEEECCHHHHHHHHHHhCCCEEC--
Confidence            345778999999999865 889999999999999997            34789999999999999999999999987  


Q ss_pred             eeeceeeeeeecCCCC
Q 013598          270 KVQKQIRCEMVNSSSS  285 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~  285 (439)
                        -+.++++.+.....
T Consensus        70 --g~~l~v~~a~~~~~   83 (90)
T 2dnp_A           70 --GKRINVELSTKGQK   83 (90)
T ss_dssp             --TEECEEEESCCCCC
T ss_pred             --CcEEEEEECCCCCC
Confidence              35678888776643

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.48  E-value=6.2e-14  Score=107.02  Aligned_cols=82  Identities=17%  Similarity=0.199  Sum_probs=67.7

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ...++-+|||+|||...+ +.+|+.+|..+|.|..+       +.||  .+||||||+|.+.++|.++|+.+||..|.+ 
T Consensus        12 ~~~~~~~l~V~nL~~~~t-~~~l~~~F~~~g~v~~~-------~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-   80 (96)
T 1fjc_A           12 KVRAARTLLAKNLSFNIT-EDELKEVFEDALEIRLV-------SQDG--KSKGIAYIEFKSEADAEKNLEEKQGAEIDG-   80 (96)
T ss_dssp             TTTGGGEEEEESCCSSCC-HHHHHHHHCSEEEECCE-------EETT--EEEEEEEEEESSHHHHHHHHHHTTEEEETT-
T ss_pred             cCCCCCEEEEeCCCCCCC-HHHHHHHHhhCCcEEEe-------CCCC--CcceEEEEEECCHHHHHHHHHHhCCCEECC-
Confidence            345778999999999865 88999999999876554       3455  889999999999999999999999999873 


Q ss_pred             eeeceeeeeeecCCCC
Q 013598          270 KVQKQIRCEMVNSSSS  285 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~  285 (439)
                         +.|+++.+..++.
T Consensus        81 ---~~l~v~~a~~~~~   93 (96)
T 1fjc_A           81 ---RSVSLYYTGEKGG   93 (96)
T ss_dssp             ---EEEEEEECSSSCC
T ss_pred             ---eEEEEEEcCCCCC
Confidence               4577887766543

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=1.4e-13  Score=109.28  Aligned_cols=83  Identities=23%  Similarity=0.380  Sum_probs=68.7

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .....+-+|||+|||...+ +.+|+.+|..+|.|.++++..  ++  +  .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus        24 ~~~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~i~~--~~--~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g   96 (109)
T 2err_A           24 ENKSQPKRLHVSNIPFRFR-DPDLRQMFGQFGKILDVEIIF--NE--R--GSKGFGFVTFENSADADRAREKLHGTVVEG   96 (109)
T ss_dssp             SCTTCCCEEEEESCCTTCC-HHHHHHHGGGTCCCSCEEECC--BT--T--BCTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred             cCCCCCCEEEEECCCCcCC-HHHHHHHHHhcCCEEEEEEEE--CC--C--CCceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence            4456788999999999865 889999999999999998443  32  2  379999999999999999999999999874


Q ss_pred             ceeeceeeeeeecC
Q 013598          269 GKVQKQIRCEMVNS  282 (439)
Q Consensus       269 gKVEK~ikcE~~~~  282 (439)
                          +.++++.+..
T Consensus        97 ----~~l~V~~a~~  106 (109)
T 2err_A           97 ----RKIEVNNATA  106 (109)
T ss_dssp             ----EECEEEECCC
T ss_pred             ----EEEEEEECCC
Confidence                5566666654

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.48  E-value=1.6e-13  Score=110.79  Aligned_cols=82  Identities=23%  Similarity=0.361  Sum_probs=70.0

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      ++-+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++++.+||..|.+    
T Consensus         2 ~~~~l~v~nlp~~~~-~~~l~~~f~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~g----   72 (168)
T 1b7f_A            2 SNTNLIVNYLPQDMT-DRELYALFRAIGPINTCR--IMRDYKTG--YSYGYAFVDFTSEMDSQRAIKVLNGITVRN----   72 (168)
T ss_dssp             CCSEEEEECCCTTCC-HHHHHHHHHTTSCEEEEE--CCEETTTT--EECSEEEEEESSHHHHHHHHHHHTTCEETT----
T ss_pred             CccEEEEeCCCCCCC-HHHHHHHHHhcCCeeEEE--EEEeCCCC--ccceEEEEEECCHHHHHHHHHhcCCCEeCC----
Confidence            457899999999865 889999999999999998  55566676  899999999999999999999999999863    


Q ss_pred             ceeeeeeecCC
Q 013598          273 KQIRCEMVNSS  283 (439)
Q Consensus       273 K~ikcE~~~~~  283 (439)
                      +.++++.+...
T Consensus        73 ~~l~v~~~~~~   83 (168)
T 1b7f_A           73 KRLKVSYARPG   83 (168)
T ss_dssp             EECEEEECCCC
T ss_pred             cEEEEEecCCC
Confidence            45667666543

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=1.5e-13  Score=109.26  Aligned_cols=80  Identities=14%  Similarity=0.188  Sum_probs=64.8

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      ...+.+|||+|||.+.+ ++||+++|..+| +++|+  ...++ ||  .|||||||+|.+.++|.++|+ +||+.|..  
T Consensus        12 ~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G-~~~v~--i~~d~-~g--~~~G~afV~F~~~~~a~~Al~-~~~~~~~g--   81 (102)
T 1wez_A           12 STTGHCVHMRGLPYRAT-ENDIYNFFSPLN-PMRVH--IEIGP-DG--RVTGEADVEFATHEDAVAAMA-KDKANMQH--   81 (102)
T ss_dssp             CSSSCEEEEESCCTTCC-HHHHHHSSCSCC-CSEEE--EEESS-SS--CEEEEEEEECSSSHHHHHHHT-TSSCCSSS--
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHHcC-ceEEE--EEECC-CC--CEeeEEEEEECCHHHHHHHHH-hCCCeECC--
Confidence            35678999999999975 889999999999 66887  44555 65  999999999999999999996 69988763  


Q ss_pred             eeceeeeeeecC
Q 013598          271 VQKQIRCEMVNS  282 (439)
Q Consensus       271 VEK~ikcE~~~~  282 (439)
                        +.|++..+..
T Consensus        82 --r~i~V~~~~~   91 (102)
T 1wez_A           82 --RYVELFLNST   91 (102)
T ss_dssp             --SCCEEEEECC
T ss_pred             --cEEEEEECCC
Confidence              3455555443

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.47  E-value=1.1e-13  Score=110.93  Aligned_cols=70  Identities=23%  Similarity=0.241  Sum_probs=61.1

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...-+|||||||.+.+ +.+|+++|..+|.|.+|++.  .++.   +.+||||||+|.+.++|.++|+ +||+.|.+
T Consensus         9 ~~~~~lfV~~Lp~~~t-e~~L~~~F~~~G~v~~v~i~--~d~~---g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g   78 (103)
T 1s79_A            9 VKNRSVYIKGFPTDAT-LDDIKEWLEDKGQVLNIQMR--RTLH---KAFKGSIFVVFDSIESAKKFVE-TPGQKYKE   78 (103)
T ss_dssp             SGGGCEEEECCCTTCC-HHHHHHHHHTSSCEEEEEEE--CCCT---TSCCCEEEEEESSHHHHHHHHT-SSCCCCTT
T ss_pred             CCCCEEEEECCCCCCC-HHHHHHHHhhcCCEEEEEEE--ECCC---CCCccEEEEEECCHHHHHHHHH-cCCCEECC
Confidence            3567999999999865 88999999999999999844  4432   3899999999999999999999 89999876

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.47  E-value=1.9e-13  Score=109.42  Aligned_cols=80  Identities=16%  Similarity=0.269  Sum_probs=68.7

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK  273 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK  273 (439)
                      .-+|||+|||...+ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++++.+||..|.+    +
T Consensus         2 ~~~l~v~nlp~~~~-~~~l~~~f~~~G~i~~v~--~~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~g----~   72 (167)
T 1fxl_A            2 KTNLIVNYLPQNMT-QEEFRSLFGSIGEIESCK--LVRDKITG--QSLGYGFVNYIDPKDAEKAINTLNGLRLQT----K   72 (167)
T ss_dssp             CSEEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT----E
T ss_pred             cceEEEcCCCCCCC-HHHHHHHHHhcCCeEEEE--EEeCCCCC--cceeEEEEEECCHHHHHHHHHHcCCCccCC----c
Confidence            46899999999865 889999999999999998  55666676  899999999999999999999999999874    5


Q ss_pred             eeeeeeecC
Q 013598          274 QIRCEMVNS  282 (439)
Q Consensus       274 ~ikcE~~~~  282 (439)
                      .++++.+..
T Consensus        73 ~l~v~~~~~   81 (167)
T 1fxl_A           73 TIKVSYARP   81 (167)
T ss_dssp             ECEEEECCC
T ss_pred             eEEEEecCC
Confidence            566666553

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.47  E-value=3.1e-13  Score=109.20  Aligned_cols=87  Identities=18%  Similarity=0.132  Sum_probs=70.6

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...+++-+|||+|||...+ +.||+++|..+|.|.+|++.  .+        ||||||+|++.++|.++|+.+||..+.+
T Consensus        10 ~~~~p~~~l~V~nLp~~~t-e~~L~~~F~~fG~V~~v~i~--~~--------kg~aFVef~~~~~A~~Ai~~l~~~~~~i   78 (104)
T 1wex_A           10 HKVSVSPVVHVRGLCESVV-EADLVEALEKFGTICYVMMM--PF--------KRQALVEFENIDSAKECVTFAADVPVYI   78 (104)
T ss_dssp             CCCCCCSEEEEESCCSSCC-HHHHHHHHTTTSCEEEEEEE--TT--------TTEEEEEESSHHHHHHHHHHHHHSCCBS
T ss_pred             CcCCCCCEEEEeCCCCCCC-HHHHHHHHHhCCCEEEEEEE--CC--------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence            3446778999999999865 88999999999999999742  22        8999999999999999999998876443


Q ss_pred             ceeeceeeeeeecCCCCCCC
Q 013598          269 GKVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~~~~  288 (439)
                      .  -++|+|+.+..+....+
T Consensus        79 ~--Gr~l~V~~a~~~~~~~~   96 (104)
T 1wex_A           79 A--GQQAFFNYSTSKRITRP   96 (104)
T ss_dssp             S--SSBCEEEECSSSSCCCS
T ss_pred             C--CEEEEEEEccCccccCC
Confidence            2  36788888887665544

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.47  E-value=1.6e-13  Score=114.85  Aligned_cols=83  Identities=16%  Similarity=0.181  Sum_probs=67.8

Q ss_pred             CCCccEEEEcCCCCCCchHHH----HHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          191 MPSGIRVRLLNLPKKKNIHRD----LKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kD----L~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      .+++.+|||||||...+ ..+    |.++|..+|.|++|...     +||  .+||||||+|.+.++|.++|+.+||+.|
T Consensus        26 ~~p~~~LfV~nL~~~~~-e~~L~~~L~~~F~~~G~I~~v~i~-----~~~--~~rG~aFV~F~~~~~A~~Ai~~lng~~l   97 (127)
T 2a3j_A           26 TEPSQVVLITNINPEVP-KEKLQALLYALASSQGDILDIVVD-----LSD--DNSGKAYIVFATQESAQAFVEAFQGYPF   97 (127)
T ss_dssp             CSCCSEEEEESCCTTSC-HHHHHHHHHHHHHHHSCEEEEEEC-----CCC--SSCCCEEEEESSHHHHHHHHHHSTTCCC
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHHHhccCCCeEEEEec-----cCC--CcCCEEEEEECCHHHHHHHHHHHCCCEe
Confidence            35678999999999865 445    45799999999998742     354  7899999999999999999999999998


Q ss_pred             ccceeeceeeeeeecCCCC
Q 013598          267 AFGKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       267 ~fgKVEK~ikcE~~~~~S~  285 (439)
                      .+    ++|+|+.+...+.
T Consensus        98 ~g----r~l~V~~a~~~~~  112 (127)
T 2a3j_A           98 QG----NPLVITFSETPQS  112 (127)
T ss_dssp             TT----SCCEEEECCCCCH
T ss_pred             CC----CEEEEEEccCcch
Confidence            63    4778888776543

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.47  E-value=3.6e-13  Score=103.55  Aligned_cols=85  Identities=19%  Similarity=0.204  Sum_probs=70.6

Q ss_pred             CCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          187 EPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       187 ~~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      +....++.-+|||+|||...+ +.+|+.+|..+|.|.+|+..      ++    ||||||+|.+.++|.++|+.+||+.|
T Consensus        10 ~~~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~v~~v~~~------~~----~g~afV~f~~~~~A~~A~~~l~g~~~   78 (97)
T 1why_A           10 GYGKANPTTRLWVGGLGPNTS-LAALAREFDRFGSIRTIDHV------KG----DSFAYIQYESLDAAQAACAKMRGFPL   78 (97)
T ss_dssp             CCCCCCCCSCEEEECCCSSCC-HHHHHHHHHTTSCEEEEEEC------SS----SCCEEEEESSHHHHHHHHHHHTTCBC
T ss_pred             cCCCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeeEEEEe------CC----CCEEEEEECCHHHHHHHHHHHCCCEe
Confidence            445567788999999999865 88999999999999999732      22    89999999999999999999999998


Q ss_pred             cc-ceeeceeeeeeecCCCC
Q 013598          267 AF-GKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       267 ~f-gKVEK~ikcE~~~~~S~  285 (439)
                      .. |   +.++|+.+..+..
T Consensus        79 ~~~g---~~l~V~~a~~~~~   95 (97)
T 1why_A           79 GGPD---RRLRVDFAKSGPS   95 (97)
T ss_dssp             SSSS---CBCEEEECCCCCC
T ss_pred             CCCC---cEEEEEECCCCCC
Confidence            74 3   5677887766543

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.47  E-value=7.9e-14  Score=123.91  Aligned_cols=117  Identities=11%  Similarity=0.090  Sum_probs=90.0

Q ss_pred             CCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHHH
Q 013598          134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDL  212 (439)
Q Consensus       134 PrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~kDL  212 (439)
                      ++|||++.|.+.+.++++| +|.+.. .++.+.+..                       ....+|||+|||...+ ..+|
T Consensus        80 ~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~-----------------------~~~~~l~v~nlp~~~t-~~~l  134 (292)
T 2ghp_A           80 NFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSH-----------------------LTECTLWMTNFPPSYT-QRNI  134 (292)
T ss_dssp             SSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE-----------------------CCSCEEEEECCCTTCC-HHHH
T ss_pred             CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEE-----------------------CCCCEEEEECCCCCCC-HHHH
Confidence            6899999999999999999 475544 444444432                       1367999999999865 8899


Q ss_pred             HHHhccCC-CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCC
Q 013598          213 KSAFKGVP-GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSS  284 (439)
Q Consensus       213 ~~aFk~vG-gvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~~~S  284 (439)
                      +++|..+| .|.+|++....+     +.+||||||+|.+.++|.++|+.+||+.|.+    +.+++..+....
T Consensus       135 ~~~f~~~G~~i~~v~i~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~~  198 (292)
T 2ghp_A          135 RDLLQDINVVALSIRLPSLRF-----NTSRRFAYIDVTSKEDARYCVEKLNGLKIEG----YTLVTKVSNPLE  198 (292)
T ss_dssp             HHHHHHTTCCCCEEECC------------CCEEEEECSSHHHHHHHHHHHTTCEETT----EECEEEECCCC-
T ss_pred             HHHHHHhCCCeEEEEEEeCCC-----CCcceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEEEEECCCCc
Confidence            99999999 999998443322     3679999999999999999999999999864    566777666443

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=5.5e-13  Score=106.41  Aligned_cols=73  Identities=15%  Similarity=0.264  Sum_probs=59.9

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCC-CCcccceEEEeecCHHHHHHHHHHh---CCcee
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTK-DPICKGFAFVDFESEDYATRFVQLF---SRQII  266 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTg-Dp~CKGFAFVTf~seEdA~rfIEk~---NGq~~  266 (439)
                      ....-+|||+|||...+ +.+|+++|..+|.|. +.  ...++.|+ .+.+||||||+|.+.++|.++|+.+   ||+.|
T Consensus         5 ~~~~~~lfVgnLp~~~t-e~~L~~~F~~~G~i~-~~--~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~   80 (114)
T 2dnl_A            5 SSGSRKVFVGGLPPDID-EDEITASFRRFGPLV-VD--WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY   80 (114)
T ss_dssp             SSCCCCEEEECCCTTCC-HHHHHHHTTTTCCCC-EE--CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred             CCCCCEEEEcCCCCCCC-HHHHHHHHHhcCCEE-EE--EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence            34678999999999865 889999999999998 65  44555551 0289999999999999999999998   77765


Q ss_pred             c
Q 013598          267 A  267 (439)
Q Consensus       267 ~  267 (439)
                      .
T Consensus        81 ~   81 (114)
T 2dnl_A           81 L   81 (114)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.46  E-value=2.6e-13  Score=106.62  Aligned_cols=84  Identities=17%  Similarity=0.252  Sum_probs=70.2

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ..+...+|||+|||...+ ..+|+.+|..+|.|.+|++.  .+        ||||||+|.+.++|.++|+.|||..|.+ 
T Consensus        21 ~~~~~~~l~V~nl~~~~t-~~~l~~~F~~~G~i~~v~i~--~~--------~g~afV~f~~~~~a~~A~~~l~g~~~~g-   88 (109)
T 1x4g_A           21 SSPKNCTVYCGGIASGLT-DQLMRQTFSPFGQIMEIRVF--PE--------KGYSFVRFSTHESAAHAIVSVNGTTIEG-   88 (109)
T ss_dssp             SCSSCCEEEEECCSSCCC-HHHHHHHHHHHSCEEEEEEE--TT--------TTEEEEEESSHHHHHHHHHHHTTCEETT-
T ss_pred             CCCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEEe--CC--------CCEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence            345678999999999865 88999999999999999733  22        8999999999999999999999999873 


Q ss_pred             eeeceeeeeeecCCCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~~~  288 (439)
                         +.|+|+.+........
T Consensus        89 ---~~l~v~~a~~~~~~~~  104 (109)
T 1x4g_A           89 ---HVVKCYWGKESPDMTS  104 (109)
T ss_dssp             ---EECEEECCCCCCSSCC
T ss_pred             ---cEEEEEecCCCCCCCC
Confidence               5678888777665443

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.46  E-value=1.2e-13  Score=111.71  Aligned_cols=86  Identities=19%  Similarity=0.310  Sum_probs=69.9

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ++..+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.||.+.+||||||+|.+.++|.++|+.+||..+..++ 
T Consensus         1 s~~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~--i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~-   76 (175)
T 3nmr_A            1 SDAIKMFVGQVPRTWS-EKDLRELFEQYGAVYEIN--VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGM-   76 (175)
T ss_dssp             CCCEEEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--EEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTC-
T ss_pred             CCceEEEEeCCCCCCC-HHHHHHHHHhCCCEEEEE--EEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCC-
Confidence            3577999999999865 889999999999999998  455555765689999999999999999999999999876542 


Q ss_pred             eceeeeeeec
Q 013598          272 QKQIRCEMVN  281 (439)
Q Consensus       272 EK~ikcE~~~  281 (439)
                      .+.+.+....
T Consensus        77 ~~~~~~~~~~   86 (175)
T 3nmr_A           77 HHPIQMKPAD   86 (175)
T ss_dssp             SSCCEEEECG
T ss_pred             ccceEEcccc
Confidence            2344444433

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.46  E-value=1.5e-13  Score=111.82  Aligned_cols=80  Identities=14%  Similarity=0.150  Sum_probs=65.7

Q ss_pred             CCccEEEEcCCCC-CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          192 PSGIRVRLLNLPK-KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       192 ~dgvRVrVGNLPk-k~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      +++-+|||+|||. ..+ +.||+++|..+|.|.+|++  ..+        ||||||+|++.++|.++|+.|||....+. 
T Consensus        13 ~p~~~l~V~nLp~~~~t-e~dL~~lF~~fG~V~~v~i--~~~--------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~-   80 (102)
T 1x4d_A           13 ETRRVVHIMDFQRGKNL-RYQLLQLVEPFGVISNHLI--LNK--------INEAFIEMATTEDAQAAVDYYTTTPALVF-   80 (102)
T ss_dssp             CCCCEEEEESCCCSSSH-HHHHHTTTGGGSCEEEEEE--CSS--------SSCEEEEESSHHHHHHHHHHHHHSCCEET-
T ss_pred             CCCCEEEEeCCCCCcCC-HHHHHHHHHhcCCEEEEEE--EcC--------CCEEEEEECCHHHHHHHHHHHcCCCceEC-
Confidence            4688999999999 854 8899999999999999984  333        79999999999999999999998653331 


Q ss_pred             eeceeeeeeecCCC
Q 013598          271 VQKQIRCEMVNSSS  284 (439)
Q Consensus       271 VEK~ikcE~~~~~S  284 (439)
                       -++|+|+.+..+.
T Consensus        81 -Gr~l~V~~a~~~~   93 (102)
T 1x4d_A           81 -GKPVRVHLSQKYK   93 (102)
T ss_dssp             -TEECEEEEECCCT
T ss_pred             -CcEEEEEECCCCC
Confidence             3577888887544

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.46  E-value=1.3e-13  Score=113.32  Aligned_cols=79  Identities=16%  Similarity=0.131  Sum_probs=65.9

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCC-CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVP-GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vG-gvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      .+.+.+|||+|||..++ .+||+++|..+| .|..+.+.  .    +  .+||||||+|.+.++|.++|+.+||..|.+ 
T Consensus        25 p~~~~~l~VgnLp~~~t-e~dL~~~F~~~G~~v~~v~i~--~----~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G-   94 (111)
T 2jvr_A           25 PAKRYRITMKNLPEGCS-WQDLKDLARENSLETTFSSVN--T----R--DFDGTGALEFPSEEILVEALERLNNIEFRG-   94 (111)
T ss_dssp             CCCCEEEEEECSSCCCC-HHHHHHHHHHHTCCCSEEECS--S----C--SSSCCEEEEESSHHHHHHHHHHTTTEEETT-
T ss_pred             CCCCCEEEEECCCCCCC-HHHHHHHHHHhCCeeEEEEEE--c----C--CCCCEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence            34678999999999865 889999999999 89888732  1    1  369999999999999999999999999874 


Q ss_pred             eeeceeeeeeecC
Q 013598          270 KVQKQIRCEMVNS  282 (439)
Q Consensus       270 KVEK~ikcE~~~~  282 (439)
                         +.|+|+.+..
T Consensus        95 ---r~i~V~~a~~  104 (111)
T 2jvr_A           95 ---SVITVERDDN  104 (111)
T ss_dssp             ---EEEEEEESCC
T ss_pred             ---eEEEEEECCC
Confidence               4677777654

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.46  E-value=3.3e-13  Score=106.23  Aligned_cols=80  Identities=20%  Similarity=0.257  Sum_probs=68.4

Q ss_pred             CCCCccEEEEcCCCCC-CchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          190 DMPSGIRVRLLNLPKK-KNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk-~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ..+.+-+|||+|||.. .+ +.+|+.+|..+|.|.+|++            +||||||+|.+.++|.++|+.+||..|. 
T Consensus        23 ~~~~~~~l~V~nl~~~~~t-~~~l~~~F~~~G~v~~v~i------------~~g~afV~f~~~~~A~~A~~~l~g~~~~-   88 (110)
T 1wf1_A           23 PKSINSRVFIGNLNTALVK-KSDVETIFSKYGRVAGCSV------------HKGYAFVQYSNERHARAAVLGENGRVLA-   88 (110)
T ss_dssp             CTTCSSEEEECSCCCSSCC-HHHHHHHHGGGSCCSEEEE------------ETTEEEEECSSSHHHHHHHHHHTTCEET-
T ss_pred             CCCCCcEEEEeCCCcccCC-HHHHHHHHHhCCCeEEEEE------------eCCEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence            4456689999999998 65 8899999999999999984            4899999999999999999999999987 


Q ss_pred             ceeeceeeeeeecCCCCC
Q 013598          269 GKVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~~  286 (439)
                         -+.|+|+.+......
T Consensus        89 ---g~~l~V~~a~~~~~~  103 (110)
T 1wf1_A           89 ---GQTLDINMAGEPKPD  103 (110)
T ss_dssp             ---TEECCEEESCCCCSC
T ss_pred             ---CeEEEEEECCCCCCC
Confidence               356888887654443

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.45  E-value=3.3e-13  Score=105.58  Aligned_cols=78  Identities=21%  Similarity=0.235  Sum_probs=65.8

Q ss_pred             CCCCCccEEEEcCCCC-CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          189 EDMPSGIRVRLLNLPK-KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       189 e~~~dgvRVrVGNLPk-k~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      ...+++-+|||+|||. ..+ +.+|+.+|..+|.|.++++            .||||||+|.+.++|.++|+.+||..|.
T Consensus        17 ~~~~~~~~l~V~nLp~~~~t-~~~L~~~F~~~G~v~~v~i------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~   83 (97)
T 2xnq_A           17 RGSHMKSRLFIGNLPLKNVS-KEDLFRIFSPYGHIMQINI------------KNAFGFIQFDNPQSVRDAIEXESQEMNF   83 (97)
T ss_dssp             --CCTTCEEEEESCCSSCCC-HHHHHHHHGGGSCEEEEEE------------CSSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred             CCCCCCCEEEEeCCCcccCC-HHHHHHHHHhcCCEEEEEE------------eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            4556889999999997 755 8899999999999999984            3899999999999999999999999987


Q ss_pred             cceeeceeeeeeecCC
Q 013598          268 FGKVQKQIRCEMVNSS  283 (439)
Q Consensus       268 fgKVEK~ikcE~~~~~  283 (439)
                      +    +.++++.+..+
T Consensus        84 g----~~l~V~~a~~~   95 (97)
T 2xnq_A           84 G----KKLILEVSSSN   95 (97)
T ss_dssp             T----EECEEEECCCC
T ss_pred             C----EEEEEEecCCC
Confidence            3    56777776554

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.45  E-value=6.7e-14  Score=114.69  Aligned_cols=86  Identities=20%  Similarity=0.184  Sum_probs=68.6

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeec---cccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPV---VSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpA---v~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      ..++.+|||+|||..++ ..+|+.+|..+|.|.++.+.   .+..++||  .+||||||+|.+.++|.++|+.+||..|.
T Consensus        42 ~~~~~~l~V~nLp~~~t-e~~L~~~F~~~G~i~~~~~~~~~di~~~~~g--~~~g~afV~f~~~~~A~~Ai~~lng~~~~  118 (143)
T 3egn_A           42 GEPNCRIYVKNLAKHVQ-EKDLKYIFGRYVDFSSETQRIMFDIRLMKEG--RMKGQAFIGLPNEKAAAKALKEANGYVLF  118 (143)
T ss_dssp             CSCCSEEEEEEECTTCC-HHHHHHHHGGGCCTTCHHHHHHCEEEEEEET--TTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHHhCCcccccccceeeEEeccCC--CcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence            34568999999999865 88999999999998875211   12223465  88999999999999999999999999986


Q ss_pred             cceeeceeeeeeecCC
Q 013598          268 FGKVQKQIRCEMVNSS  283 (439)
Q Consensus       268 fgKVEK~ikcE~~~~~  283 (439)
                          -+.|+++.+...
T Consensus       119 ----g~~l~V~~a~~~  130 (143)
T 3egn_A          119 ----GKPMVVQFARSA  130 (143)
T ss_dssp             ----TEECEEEECCCS
T ss_pred             ----CcEEEEEECCCC
Confidence                356778777654

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.44  E-value=4.5e-13  Score=108.04  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=67.1

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC--ceecc
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR--QIIAF  268 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NG--q~~~f  268 (439)
                      .+++-+|||+|||...+ +.||+++|..+|.|.+|++.  .+        ||||||+|++.++|.++|+.|+|  ..|. 
T Consensus        12 ~~p~~~l~V~nLp~~~t-e~~L~~~F~~fG~v~~v~i~--~~--------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~-   79 (101)
T 2cq1_A           12 GAPSRVLHIRKLPGEVT-ETEVIALGLPFGKVTNILML--KG--------KNQAFLELATEEAAITMVNYYSAVTPHLR-   79 (101)
T ss_dssp             SSCCSEEEEESCCTTCC-HHHHHHTTTTTSCEEEEEEE--TT--------TTEEEEEESSHHHHHHHHHHHHHSCCEET-
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEEEE--CC--------CCEEEEEECCHHHHHHHHHHhccCCceEC-
Confidence            35778999999999865 88999999999999999733  22        89999999999999999998864  4454 


Q ss_pred             ceeeceeeeeeecCCCCCC
Q 013598          269 GKVQKQIRCEMVNSSSSNS  287 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~~~  287 (439)
                         -++|+|+.+..+....
T Consensus        80 ---Gr~l~V~~a~~~~~~~   95 (101)
T 2cq1_A           80 ---NQPIYIQYSNHKELKT   95 (101)
T ss_dssp             ---TEECEEEECSCSSCCC
T ss_pred             ---CcEEEEEEcCcccCcC
Confidence               3678888887666554

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.44  E-value=3.7e-13  Score=103.90  Aligned_cols=76  Identities=16%  Similarity=0.214  Sum_probs=64.2

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      .+.+-+|||+|||...+ +.+|+.+|..+|.|.++++.          .+||||||+|.+.++|.++|+.+||..|.+  
T Consensus        24 ~~~~~~l~V~nlp~~~~-~~~l~~~f~~~G~i~~~~~~----------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--   90 (101)
T 2la4_A           24 PPRVTTAYIGNIPHFAT-EADLIPLFQNFGFILDFKHY----------PEKGCCFIKYDTHEQAAVCIVALANFPFQG--   90 (101)
T ss_dssp             CSSCCEEEEESCCTTCC-HHHHHHHHHTTSCCSEEEEE----------TTTTEEEEECSSHHHHHHHHHHHTTCEETT--
T ss_pred             CCCCCEEEEcCCCcccC-HHHHHHHHHhCCCEEEEEEe----------cCCCEEEEEECCHHHHHHHHHHhCCCeECC--
Confidence            34678999999999865 88999999999999999843          248999999999999999999999999874  


Q ss_pred             eeceeeeeeec
Q 013598          271 VQKQIRCEMVN  281 (439)
Q Consensus       271 VEK~ikcE~~~  281 (439)
                        +.++|+.+.
T Consensus        91 --~~l~V~~a~   99 (101)
T 2la4_A           91 --RNLRTGWGK   99 (101)
T ss_dssp             --EECCCCBCC
T ss_pred             --eEEEEEecc
Confidence              445555544

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.44  E-value=1.9e-13  Score=110.59  Aligned_cols=79  Identities=20%  Similarity=0.204  Sum_probs=64.4

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCC---eeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPG---IINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGg---visIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      ..++.+|||+|||..++ +.||+++|..+|.   |.+|++.  .++. |  .+||||||+|.+.++|.++|+ +||+.|.
T Consensus        14 ~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~~~~v~~v~i~--~~~~-g--~~~G~afV~F~~~~~a~~Al~-~~g~~~~   86 (118)
T 2db1_A           14 GGEGYVVKLRGLPWSCS-IEDVQNFLSDCTIHDGVAGVHFI--YTRE-G--RQSGEAFVELESEDDVKLALK-KDRESMG   86 (118)
T ss_dssp             BCCCCEEEEESCCTTCC-HHHHHHHTTTSCBTTGGGGEEEE--ECSS-S--CEEEEEEEEBSSHHHHHHHGG-GTTEEET
T ss_pred             CCCCcEEEEeCCCCCCC-HHHHHHHHHHcCCccCceeEEEE--ECCC-C--CCCeEEEEEECCHHHHHHHHh-cCCCeEC
Confidence            45678999999999875 8899999999998   7888743  4432 3  899999999999999999999 9999987


Q ss_pred             cceeeceeeeeee
Q 013598          268 FGKVQKQIRCEMV  280 (439)
Q Consensus       268 fgKVEK~ikcE~~  280 (439)
                      +    +.|++..+
T Consensus        87 g----r~i~V~~a   95 (118)
T 2db1_A           87 H----RYIEVFKS   95 (118)
T ss_dssp             T----EEEEEEEE
T ss_pred             C----eEEEEEEC
Confidence            4    34444443

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=99.16  E-value=8.3e-15  Score=116.30  Aligned_cols=88  Identities=16%  Similarity=0.175  Sum_probs=74.2

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeE--------EeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhC
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIIN--------IIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFS  262 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvis--------IkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~N  262 (439)
                      .++.-+|||+|||...+ +.+|+.+|..+|.|.+        |+  ...++.||  .+||||||+|.+.++|.++|+.||
T Consensus         4 ~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~~~~~~~~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~   78 (116)
T 2lcw_A            4 NSDNNTIFVQGLGENVT-IESVADYFKQIGIIKTNKKTGQPMIN--LYTDRETG--KLKGEATVSFDDPPSAKAAIDWFD   78 (116)
Confidence            45678999999999854 7799999999999988        65  55666776  899999999999999999999999


Q ss_pred             CceeccceeeceeeeeeecCCCCCC
Q 013598          263 RQIIAFGKVQKQIRCEMVNSSSSNS  287 (439)
Q Consensus       263 Gq~~~fgKVEK~ikcE~~~~~S~~~  287 (439)
                      |..|.    -+.|+|+.+..+....
T Consensus        79 g~~~~----g~~l~V~~a~~~~~~~   99 (116)
T 2lcw_A           79 GKEFS----GNPIKVSFATRRADFN   99 (116)
Confidence            99987    4577888877665543

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.44  E-value=2.8e-13  Score=111.98  Aligned_cols=82  Identities=16%  Similarity=0.274  Sum_probs=67.4

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC--ceeccc
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR--QIIAFG  269 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NG--q~~~fg  269 (439)
                      +++.+|||+|||.+.+ +.||+++|..+|.|.+|++.  .+        ||||||+|++.++|.++|+.++|  ..|. |
T Consensus        14 ~~~~~LfV~nLp~~vt-e~dL~~lF~~fG~V~~v~i~--~~--------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~-G   81 (105)
T 1sjq_A           14 VPSRVIHIRKLPIDVT-EGEVISLGLPFGKVTNLLML--KG--------KNQAFIEMNTEEAANTMVNYYTSVTPVLR-G   81 (105)
T ss_dssp             CCCCEEEECSCCTTSC-HHHHHHHHHHHCCEEEEEEE--TT--------TTEEEEEESSHHHHHHHHHHHTTSCCEET-T
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEEEE--cC--------CCEEEEEECCHHHHHHHHHHhccCCceEC-C
Confidence            4678999999999865 88999999999999999843  22        89999999999999999999875  5554 3


Q ss_pred             eeeceeeeeeecCCCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~~~  288 (439)
                         ++|+|+.+..+.....
T Consensus        82 ---r~l~V~~A~~~~~~~~   97 (105)
T 1sjq_A           82 ---QPIYIQFSNHKELKTD   97 (105)
T ss_dssp             ---EECCBCCCSSSSCCCT
T ss_pred             ---EEEEEEEcCCCCCCcc
Confidence               5788888876554443

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.43  E-value=2e-13  Score=107.85  Aligned_cols=73  Identities=19%  Similarity=0.177  Sum_probs=61.7

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCC---eeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCce
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPG---IINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQI  265 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGg---visIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~  265 (439)
                      .....+.+|||+|||..++ +.||+++|..+|.   |.+|+  ...++. |  .+||||||+|.+.++|.++|+ +||+.
T Consensus         6 ~~~~~~~~l~V~nLp~~~t-e~~l~~~F~~~g~~~~v~~v~--i~~~~~-g--~~~G~afV~F~~~~~a~~Al~-~~~~~   78 (107)
T 2lmi_A            6 EEVDDVFLIRAQGLPWSCT-MEDVLNFFSDCRIRNGENGIH--FLLNRD-G--KRRGDALIEMESEQDVQKALE-KHRMY   78 (107)
T ss_dssp             CCCSSCCEEEEECCCSSCC-SHHHHHHTTTSCBTTTTTTEE--CCCCTT-S--TTCSEEEEEBSSHHHHHHHHT-TTTCC
T ss_pred             CCCCCccEEEEeCCCCCCC-HHHHHHHHHhcCCcCCcceEE--EEECCC-C--CEeeEEEEEECCHHHHHHHHH-hCcce
Confidence            3446789999999999865 8899999999777   88887  444543 4  899999999999999999999 99988


Q ss_pred             ecc
Q 013598          266 IAF  268 (439)
Q Consensus       266 ~~f  268 (439)
                      |.+
T Consensus        79 ~~g   81 (107)
T 2lmi_A           79 MGQ   81 (107)
T ss_dssp             SSS
T ss_pred             eCC
Confidence            763

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.43  E-value=3.6e-13  Score=116.56  Aligned_cols=80  Identities=20%  Similarity=0.209  Sum_probs=67.4

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      .+.-+|||||||.+++ +.+|+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||..+.+   
T Consensus        13 ~p~~tlfVgnLp~~~t-e~~L~~~F~~~G~I~~v~--i~~d~~tg--~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g---   84 (213)
T 4f02_A           13 YPMASLYVGDLHPDVT-EAMLYEKFSPAGPILSIR--VCRDMITR--RSLGYAYVNFQQPADAERALDTMNFDVIKG---   84 (213)
T ss_dssp             --CCEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred             CCCcEEEEeCCCCCCC-HHHHHHHHHhhCCEEEEE--EecccCCC--CccccccceeCCHHHHHHHHHHhhhhhcCC---
Confidence            3556899999999865 889999999999999998  55677787  899999999999999999999999999774   


Q ss_pred             eceeeeeee
Q 013598          272 QKQIRCEMV  280 (439)
Q Consensus       272 EK~ikcE~~  280 (439)
                       +.+++..+
T Consensus        85 -~~i~~~~~   92 (213)
T 4f02_A           85 -KPVRIMWS   92 (213)
T ss_dssp             -EECEEEEC
T ss_pred             -cccccccc
Confidence             34444443

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.43  E-value=4.1e-13  Score=110.38  Aligned_cols=82  Identities=20%  Similarity=0.132  Sum_probs=67.7

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...+++-+|||+|||.+.+ +.||+++|..+|.|.+++..  .        .||||||.|++.++|.++|+.+||..+.+
T Consensus        16 ~~~~ps~~l~V~NLp~~~t-e~~L~~lF~~fG~V~~v~i~--~--------~kg~AFVef~~~~~A~~Av~~ln~~~~~i   84 (100)
T 3r27_A           16 HKTPASPVVHIRGLIDGVV-EADLVEALQEFGPISYVVVM--P--------KKRQALVEFEDVLGACNAVNYAADNQIYI   84 (100)
T ss_dssp             -CCCCCSEEEEESCCTTCC-HHHHHHHHGGGSCEEEEEEE--T--------TTTEEEEEESSHHHHHHHHHHHHHSCEEE
T ss_pred             ccCCCCcEEEEeCCCCCCC-HHHHHHHHhccCCEEEEEEE--c--------CCCEEEEEECCHHHHHHHHHHhcCCCcee
Confidence            3446788999999999865 88999999999999999742  2        38999999999999999999999998654


Q ss_pred             ceeeceeeeeeecCC
Q 013598          269 GKVQKQIRCEMVNSS  283 (439)
Q Consensus       269 gKVEK~ikcE~~~~~  283 (439)
                      +  -++|+++.++.+
T Consensus        85 ~--Gr~i~V~~S~~k   97 (100)
T 3r27_A           85 A--GHPAFVNYSTSQ   97 (100)
T ss_dssp             T--TEEEEEEECSCS
T ss_pred             C--CcEEEEEecccc
Confidence            2  357888877654

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.43  E-value=5.7e-13  Score=104.96  Aligned_cols=79  Identities=19%  Similarity=0.118  Sum_probs=66.6

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      +.+-+|||+|||...+ ..+|+.+|..+|.|.+|++.  .++     .+||||||+|.+.++|.++|+.+||..|.+   
T Consensus         6 ~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~v~~v~i~--~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---   74 (115)
T 3lqv_A            6 EVNRILYIRNLPYKIT-AEEMYDIFGKYGPIRQIRVG--NTP-----ETRGTAYVVYEDIFDAKNAVDHLSGFNVSN---   74 (115)
T ss_dssp             TCCSEEEEESCCTTCC-HHHHHHHHHTTSCEEEEEEE--CST-----TTTTCEEEEESSHHHHHHHHHHHTTCBSSS---
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEEe--eCC-----CCCcEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence            4678999999999865 88999999999999999854  332     449999999999999999999999999873   


Q ss_pred             eceeeeeeecC
Q 013598          272 QKQIRCEMVNS  282 (439)
Q Consensus       272 EK~ikcE~~~~  282 (439)
                       +.++|+.+..
T Consensus        75 -~~l~v~~a~~   84 (115)
T 3lqv_A           75 -RYLVVLYYNA   84 (115)
T ss_dssp             -CBCEEEECCH
T ss_pred             -eEEEEEEecC
Confidence             4567777654

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.43  E-value=5.2e-13  Score=101.71  Aligned_cols=79  Identities=19%  Similarity=0.245  Sum_probs=64.4

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCee-EEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC-ceecc
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGII-NIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR-QIIAF  268 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvi-sIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NG-q~~~f  268 (439)
                      .+..-+|||+|||...+ +.+|+.+|..+|.++ .+..           .+||||||+|.+.++|.++|+.+|| ..|.+
T Consensus         5 ~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~vv~~~~~-----------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g   72 (93)
T 2cqh_A            5 SSGMNKLYIGNLSPAVT-ADDLRQLFGDRKLPLAGQVL-----------LKSGYAFVDYPDQNWAIRAIETLSGKVELHG   72 (93)
T ss_dssp             CCCCCCEEEECCCTTCC-HHHHHHHHHHTTCCCSSCEE-----------EETTEEEECCSCHHHHHHHHHHHTTTCEETT
T ss_pred             CCCCcEEEEeCCCCCCC-HHHHHHHHHHcCCceEEEEE-----------cCCCEEEEEECCHHHHHHHHHHccCCeeECC
Confidence            45667999999999865 889999999999944 3331           2489999999999999999999999 88763


Q ss_pred             ceeeceeeeeeecCCCC
Q 013598          269 GKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~  285 (439)
                          +.++++.+..+..
T Consensus        73 ----~~l~v~~a~~~~~   85 (93)
T 2cqh_A           73 ----KIMEVDYSVSKKL   85 (93)
T ss_dssp             ----EECEEEECCCCCC
T ss_pred             ----EEEEEEEccCccc
Confidence                5677887766543

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.43  E-value=1e-13  Score=107.21  Aligned_cols=77  Identities=18%  Similarity=0.246  Sum_probs=63.1

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc--c
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF--G  269 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f--g  269 (439)
                      ...-+|||+|||...+ +.+|+.+|..+|.|.+++  ...++ ||  .+||||||+|.+.++|.++|+  ||+.+.+  +
T Consensus         7 ~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~-~g--~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l   78 (102)
T 2xs2_A            7 IMPNTVFVGGIDVRMD-ETEIRSFFARYGSVKEVK--IITDR-TG--VSKGYGFVSFYNDVDVQKIVE--SQINFHGKKL   78 (102)
T ss_dssp             EEEEEEEEECCCTTCC-HHHHHHHHGGGSCEEEEE--EEECT-TS--CEEEEEEEEESSCCCHHHHTT--CCCEETTEEC
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHHhCCCeEEEE--EEECC-CC--CccceEEEEECCHHHHHHHHh--CCCeECCEEE
Confidence            3567999999999865 889999999999999998  44454 65  899999999999999999999  7766665  4


Q ss_pred             eeeceee
Q 013598          270 KVQKQIR  276 (439)
Q Consensus       270 KVEK~ik  276 (439)
                      +|..+++
T Consensus        79 ~v~~a~~   85 (102)
T 2xs2_A           79 KLGPAIR   85 (102)
T ss_dssp             EEEEEEE
T ss_pred             EEEECCc
Confidence            4455543

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.42  E-value=8.3e-13  Score=100.53  Aligned_cols=76  Identities=17%  Similarity=0.218  Sum_probs=64.1

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      .+.+|||+|||...+ +.+|+++|..+ +|.++++.          .+||||||+|.+.++|.++|+.+||..|.+    
T Consensus         4 ~~~~l~V~nLp~~~t-~~~l~~~F~~~-~v~~~~i~----------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----   67 (88)
T 1wg1_A            4 GSSGILVKNLPQDSN-CQEVHDLLKDY-DLKYCYVD----------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG----   67 (88)
T ss_dssp             CCCCEEEESCCSSCC-HHHHHHHTCSS-CCCCEEEE----------GGGTEEEECCSCHHHHHHHHHHHTTEEETT----
T ss_pred             CCCEEEEeCCCCCCC-HHHHHHHHhhC-CeEEEEEe----------CCCcEEEEEECCHHHHHHHHHHhCCCeECC----
Confidence            467899999999865 88999999999 99999752          459999999999999999999999999874    


Q ss_pred             ceeeeeeecCCC
Q 013598          273 KQIRCEMVNSSS  284 (439)
Q Consensus       273 K~ikcE~~~~~S  284 (439)
                      +.++++.+....
T Consensus        68 ~~l~V~~a~~~~   79 (88)
T 1wg1_A           68 KDLIVQLQPTDA   79 (88)
T ss_dssp             EEEEEEECCCCC
T ss_pred             cEEEEEEcCCCc
Confidence            456676665443

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.42  E-value=7.9e-13  Score=105.90  Aligned_cols=77  Identities=13%  Similarity=0.059  Sum_probs=65.9

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      .+.+|||+|||...+ +.+|+.+|..+|.|.+|++.          .+||||||+|.+.++|.++|+.+||+.|.    -
T Consensus         9 ~~~~l~V~nLp~~~t-e~~L~~~F~~~G~i~~v~i~----------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g   73 (111)
T 1whx_A            9 SKTVILAKNLPAGTL-AAEIQETFSRFGSLGRVLLP----------EGGITAIVEFLEPLEARKAFRHLAYSKFH----H   73 (111)
T ss_dssp             EEEEEEEESCCTTCC-HHHHHHHHHTTSCEEEEECC----------SSSSCEEEEESCHHHHHHHHHHHTTCBSS----S
T ss_pred             CCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEEEe----------CCCCEEEEEeCCHHHHHHHHHHhCCCEEC----C
Confidence            467999999999865 88999999999999999843          24899999999999999999999999987    4


Q ss_pred             ceeeeeeecCCC
Q 013598          273 KQIRCEMVNSSS  284 (439)
Q Consensus       273 K~ikcE~~~~~S  284 (439)
                      +.|+|+.+....
T Consensus        74 ~~l~V~~a~~~~   85 (111)
T 1whx_A           74 VPLYLEWAPIGV   85 (111)
T ss_dssp             SBCEEEEEETTT
T ss_pred             eEEEEEECCCCc
Confidence            567787776543

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=1.5e-12  Score=99.91  Aligned_cols=75  Identities=13%  Similarity=0.158  Sum_probs=62.4

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ...-+|||+|||...+ +.+|+.+|..+|.|.+|    ..++.||    + ||||+|.+.++|.++|+ +||+.|.+   
T Consensus         6 ~~~~~l~V~nl~~~~t-~~~l~~~F~~~G~v~~v----~~~~~~g----~-~afV~f~~~~~a~~ai~-l~g~~~~g---   71 (94)
T 2e5g_A            6 SGLRSVFVSGFPRGVD-SAQLSEYFLAFGPVASV----VMDKDKG----V-FAIVEMGDVGAREAVLS-QSQHSLGG---   71 (94)
T ss_dssp             TTCCEEEEECCCTTCC-HHHHHHHGGGTSCEEEE----EECSSSC----C-EEEEEESSHHHHHHHHT-CSCCEETT---
T ss_pred             CCCCEEEEECCCCCCC-HHHHHHHHHhcCCeEEE----EEcCCCC----c-EEEEEECCHHHHHHHHh-cCCeEECC---
Confidence            3456999999999865 88999999999999987    4566676    4 99999999999999999 99999885   


Q ss_pred             eceeeeeeec
Q 013598          272 QKQIRCEMVN  281 (439)
Q Consensus       272 EK~ikcE~~~  281 (439)
                       +.++++.+.
T Consensus        72 -~~l~V~~a~   80 (94)
T 2e5g_A           72 -HRLRVRPRE   80 (94)
T ss_dssp             -EECCCBCSC
T ss_pred             -EEEEEEECC
Confidence             345555443

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.41  E-value=7.2e-13  Score=111.28  Aligned_cols=84  Identities=14%  Similarity=0.194  Sum_probs=67.2

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ..+++-+|||+|||.+.+ +.||+++|..+|.|.+|++.  .+        ||||||+|++.++|.++|+.+||..+.+.
T Consensus        27 ~~~ps~~LfVgNLp~~vt-e~dL~~lF~~fG~V~~v~i~--~~--------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~   95 (119)
T 2ad9_A           27 AGVPSRVIHIRKLPIDVT-EGEVISLGLPFGKVTNLLML--KG--------KNQAFIEMNTEEAANTMVNYYTSVTPVLR   95 (119)
T ss_dssp             CSSCCSEEEEESCCTTCC-HHHHHHHHTTTSCCCEEEEE--GG--------GTEEEEECSCHHHHHHHHHHHHHHCCCBT
T ss_pred             cCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEEEe--CC--------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence            345788999999999865 88999999999999999843  22        89999999999999999999986532221


Q ss_pred             eeeceeeeeeecCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~  286 (439)
                        -++|+|+.+..+...
T Consensus        96 --Gr~l~V~~a~~k~~~  110 (119)
T 2ad9_A           96 --GQPIYIQFSNHKELK  110 (119)
T ss_dssp             --TBCCEEEECSSSSCC
T ss_pred             --CeEEEEEEccCCCCC
Confidence              357888887655443

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.41  E-value=1e-12  Score=109.30  Aligned_cols=85  Identities=18%  Similarity=0.219  Sum_probs=68.6

Q ss_pred             CCCccEEEEcCCCCC-CchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          191 MPSGIRVRLLNLPKK-KNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk-~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      .+++-+|||+|||.. .+ +.||+++|..+|.|.+|++.  .        .||||||+|.+.++|.++|+.|||....+.
T Consensus        22 ~~p~~~l~V~NLp~~~~t-e~~L~~lF~~fG~V~~v~i~--~--------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~   90 (112)
T 1x4f_A           22 QELGRVIHLSNLPHSGYS-DSAVLKLAEPYGKIKNYILM--R--------MKSQAFIEMETREDAMAMVDHCLKKALWFQ   90 (112)
T ss_dssp             SCCCCEEEEESCCCSSCC-SHHHHTTTTTTSCCSEEEEE--T--------TTTEEEEECSSHHHHHHHHHHHHHSCCCSS
T ss_pred             CCCCCEEEEeCCCCccCC-HHHHHHHHHhcCCEEEEEEe--c--------CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence            557899999999996 65 88999999999999999842  1        289999999999999999999987553331


Q ss_pred             eeeceeeeeeecCCCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~~~  288 (439)
                        -+.|+|+.+...+....
T Consensus        91 --Gr~l~V~~a~~~~~~~~  107 (112)
T 1x4f_A           91 --GRCVKVDLSEKYKKLVS  107 (112)
T ss_dssp             --SSCCEEEEECSCSSSSC
T ss_pred             --CEEEEEEECcccccccc
Confidence              36788888876655443

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.41  E-value=7.8e-13  Score=105.77  Aligned_cols=79  Identities=22%  Similarity=0.179  Sum_probs=65.6

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeecee
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQI  275 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~i  275 (439)
                      +|||+|||...+ ..+|+++|..+|.|.+|++.  .++ +  +.+||||||+|.+.++|.++++.+||+.|.    .+.+
T Consensus         2 ~l~V~nlp~~~t-~~~l~~~f~~~G~i~~v~i~--~~~-~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~i   71 (166)
T 3md3_A            2 VLYVGNLDKAIT-EDILKQYFQVGGPIANIKIM--IDK-N--NKNVNYAFVEYHQSHDANIALQTLNGKQIE----NNIV   71 (166)
T ss_dssp             EEEEEEEETTCC-HHHHHHHHGGGSCEEEEEEE--CCC-C---CCEEEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred             EEEECCCCCcCC-HHHHHHHHHhcCCeEEEEEE--ECC-C--CCCCCEEEEEeCCHHHHHHHHHHcCCCccC----CCee
Confidence            799999999865 88999999999999999843  443 2  268999999999999999999999999987    3566


Q ss_pred             eeeeecCCC
Q 013598          276 RCEMVNSSS  284 (439)
Q Consensus       276 kcE~~~~~S  284 (439)
                      +++.+....
T Consensus        72 ~v~~~~~~~   80 (166)
T 3md3_A           72 KINWAFQSQ   80 (166)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEcCCCC
Confidence            666665443

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.40  E-value=9.2e-13  Score=105.33  Aligned_cols=79  Identities=19%  Similarity=0.273  Sum_probs=66.1

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .....+-+|||+|||...+ +.+|+.+|..+|.|.++++            +||||||+|.+.++|.++|+.+||..|.+
T Consensus        26 ~~~~~~~~l~V~nLp~~~t-~~~L~~~F~~~G~i~~v~i------------~kg~afV~f~~~~~A~~Ai~~l~g~~~~g   92 (108)
T 2jvo_A           26 EGELSNTRLFVRPFPLDVQ-ESELNEIFGPFGPMKEVKI------------LNGFAFVEFEEAESAAKAIEEVHGKSFAN   92 (108)
T ss_dssp             --CCSCSEEEECSSCTTCC-HHHHHHHHTTTSCCCEEEE------------ETTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCCCCEEEEECCCCCCC-HHHHHHHHHhcCCEEEEEE------------ECCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence            3446788999999999865 8899999999999999973            28999999999999999999999999863


Q ss_pred             ceeeceeeeeeecCCC
Q 013598          269 GKVQKQIRCEMVNSSS  284 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S  284 (439)
                          +.++++.+....
T Consensus        93 ----~~l~V~~a~~~~  104 (108)
T 2jvo_A           93 ----QPLEVVYSKLPA  104 (108)
T ss_dssp             ----EECEEESCSCCC
T ss_pred             ----eEEEEEEecCCC
Confidence                456777765543

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.40  E-value=8.6e-13  Score=109.23  Aligned_cols=83  Identities=14%  Similarity=0.193  Sum_probs=68.6

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ...+.-+|||+|||...+ +.+|+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+. +|+.|.+ 
T Consensus         9 ~~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~-~~~~~~g-   81 (196)
T 1l3k_A            9 EPEQLRKLFIGGLSFETT-DESLRSHFEQWGTLTDCV--VMRDPNTK--RSRGFGFVTYATVEEVDAAMNA-RPHKVDG-   81 (196)
T ss_dssp             CCGGGGEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHT-CSCEETT-
T ss_pred             CCCCCCEEEEeCCCCCCC-HHHHHHHHHhCCCEEEEE--EEEcCCCC--CccceEEEEeCCHHHHHHHHhc-CCCEECC-
Confidence            345678999999999865 889999999999999998  55666676  8999999999999999999987 8888764 


Q ss_pred             eeeceeeeeeecC
Q 013598          270 KVQKQIRCEMVNS  282 (439)
Q Consensus       270 KVEK~ikcE~~~~  282 (439)
                         +.+++..+..
T Consensus        82 ---~~l~v~~~~~   91 (196)
T 1l3k_A           82 ---RVVEPKRAVS   91 (196)
T ss_dssp             ---EECEEEECCC
T ss_pred             ---EEeeeecccC
Confidence               3445555443

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.40  E-value=6.6e-13  Score=111.49  Aligned_cols=72  Identities=22%  Similarity=0.221  Sum_probs=62.5

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .++-+|||+|||.+.+ +.+|+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+||..|.+
T Consensus        26 ~~~~~l~V~nLp~~~t-~~~l~~~f~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~~~~~~g   97 (216)
T 2qfj_A           26 AIMSRVYVGSIYYELG-EDTIRQAFAPFGPIKSID--MSWDSVTM--KHKGFAFVEYEVPEAAQLALEQMNSVMLGG   97 (216)
T ss_dssp             HHHTEEEEECCCTTCC-HHHHHHHHGGGSCEEEEE--ECCC-CC---CCCSEEEEEESSHHHHHHHHHHHSSCCCC-
T ss_pred             CcCCEEEEECCCCCCC-HHHHHHHHHhCCCEEEEE--EeecCCCC--ccCceEEEEeCCHHHHHHHHHHccCCeeCC
Confidence            3567999999999865 889999999999999998  45566676  899999999999999999999999999874

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.40  E-value=7.2e-13  Score=115.10  Aligned_cols=83  Identities=17%  Similarity=0.210  Sum_probs=71.2

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      ...+.+|||+|||...+ +.+|+++|..+|.|.+|+  ...++ ||  .+||||||+|.+.++|.++|+.|||..|.+  
T Consensus        85 ~~~~~~l~V~nLp~~~t-e~~L~~~F~~~G~I~~v~--i~~d~-~g--~~kG~afV~F~~~~~A~~Ai~~lng~~l~G--  156 (177)
T 2f3j_A           85 VETGAKLLVSNLDFGVS-DADIQELFAEFGTLKKAA--VDYDR-SG--RSLGTADVHFERRADALKAMKQYKGVPLDG--  156 (177)
T ss_dssp             CTTCEEEEEECCCSCCC-HHHHHHHHHHTSCCSEEE--ECCCT-TS--SCSCCEEEEESCHHHHHHHHHHSTTCBCSS--
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEECC-CC--CEeeEEEEEeCCHHHHHHHHHHhCCCEECC--
Confidence            35788999999999865 889999999999999998  55555 65  889999999999999999999999998864  


Q ss_pred             eeceeeeeeecCC
Q 013598          271 VQKQIRCEMVNSS  283 (439)
Q Consensus       271 VEK~ikcE~~~~~  283 (439)
                        +.|+|+.+...
T Consensus       157 --r~l~V~~a~~~  167 (177)
T 2f3j_A          157 --RPMDIQLVASQ  167 (177)
T ss_dssp             --SBCEEEEESSG
T ss_pred             --EEEEEEEecCC
Confidence              56777777554

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.9e-12  Score=99.85  Aligned_cols=80  Identities=18%  Similarity=0.247  Sum_probs=64.8

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      .+..-+|||+|||...+ +.+|+.+|..+|.|. +.  ..    |+  .+||||||+|.+.++|.++|+.+||..|.+  
T Consensus        16 ~~~~~~l~V~nL~~~~t-~~~l~~~F~~~G~v~-~~--~~----~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--   83 (97)
T 2e5j_A           16 APLAADVYVGNLPRDAR-VSDLKRALRELGSVP-LR--LT----WQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGT--   83 (97)
T ss_dssp             SCCCCEEEEECCCTTCC-HHHHHHHHHHTTCCC-SE--EE----EE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSS--
T ss_pred             CCCCCEEEEeCCCCcCc-HHHHHHHHHhcCCEE-EE--EE----cC--CCCcEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence            34567999999999865 889999999999984 33  11    22  569999999999999999999999999874  


Q ss_pred             eeceeeeeeecCCC
Q 013598          271 VQKQIRCEMVNSSS  284 (439)
Q Consensus       271 VEK~ikcE~~~~~S  284 (439)
                        +.|+++.+..+.
T Consensus        84 --~~l~V~~a~~~~   95 (97)
T 2e5j_A           84 --DTLRVALARQQR   95 (97)
T ss_dssp             --SCCEEEECCCCC
T ss_pred             --cEEEEEEcCCCC
Confidence              567777776543

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=1.4e-12  Score=97.32  Aligned_cols=74  Identities=16%  Similarity=0.161  Sum_probs=61.9

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh-CCceeccc
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF-SRQIIAFG  269 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~-NGq~~~fg  269 (439)
                      .+..-+|||+|||...+ +.+|+.+|..+|.|.+++...          .||||||+|.+.++|.++|+.+ ||..|.+ 
T Consensus         9 ~~~~~~l~V~~l~~~~t-~~~l~~~f~~~G~i~~~~~~~----------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g-   76 (85)
T 2ytc_A            9 DKTITTLYVGGLGDTIT-ETDLRNHFYQFGEIRTITVVQ----------RQQCAFIQFATRQAAEVAAEKSFNKLIVNG-   76 (85)
T ss_dssp             CSSCCCEEEECCTTTSC-HHHHHHHHHTTSCEEEEEEEG----------GGTEEEEEESSHHHHHHHHHTTTTTCEETT-
T ss_pred             CCCccEEEEcCCCCCCC-HHHHHHHHHhCCCEeEEEEEC----------CCCEEEEEECCHHHHHHHHHHhcCCeeECC-
Confidence            35678999999999865 889999999999999998432          2899999999999999999988 9999875 


Q ss_pred             eeeceeeeee
Q 013598          270 KVQKQIRCEM  279 (439)
Q Consensus       270 KVEK~ikcE~  279 (439)
                         +.++++.
T Consensus        77 ---~~l~v~~   83 (85)
T 2ytc_A           77 ---RRLNVKW   83 (85)
T ss_dssp             ---EECCEEE
T ss_pred             ---CEEEEEe
Confidence               3445543

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.39  E-value=6.5e-13  Score=112.52  Aligned_cols=80  Identities=19%  Similarity=0.168  Sum_probs=65.3

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCC---eeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPG---IINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGg---visIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      ...++.+|||+|||.+.+ +.||+++|..+|.   |.+|++  ..++. |  .+||||||+|.+.++|.++|+ +||+.|
T Consensus        40 ~~~~~~~lfVgnLp~~~t-e~dL~~~F~~~G~v~~v~~v~i--~~d~~-g--~srG~aFV~F~~~e~a~~Al~-~~g~~l  112 (136)
T 2hgl_A           40 EGGEGFVVKLRGLPWSCS-VEDVQNFLSDCTIHDGAAGVHF--IYTRE-G--RQSGEAFVELGSEDDVKMALK-KDRESM  112 (136)
T ss_dssp             SCCTTCEEEEESCCTTCC-HHHHHHHTTTCCCSSSSTTEEE--EECSS-S--CEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred             CCCCCCEEEEeCCCCCCC-HHHHHHHHHHhCCcCceeEEEE--EECCC-C--CCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence            345788999999999975 8899999999999   778873  44443 4  899999999999999999999 999998


Q ss_pred             ccceeeceeeeeee
Q 013598          267 AFGKVQKQIRCEMV  280 (439)
Q Consensus       267 ~fgKVEK~ikcE~~  280 (439)
                      .+    +.|++..+
T Consensus       113 ~g----r~i~V~~a  122 (136)
T 2hgl_A          113 GH----RYIEVFKS  122 (136)
T ss_dssp             SS----SEEEEEEC
T ss_pred             CC----EEEEEEEC
Confidence            74    34455443

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.38  E-value=4.3e-12  Score=97.82  Aligned_cols=80  Identities=16%  Similarity=0.188  Sum_probs=66.2

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      .++.+|||+||  ..+ +.+|+.+|..+|.|.+|++.          .+||||||+|.+.++|.++|+.+||..|.    
T Consensus        13 ~~~~~l~V~n~--~~t-~~~l~~~F~~~G~i~~v~i~----------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----   75 (97)
T 1x5p_A           13 RKGNTLYVYGE--DMT-PTLLRGAFSPFGNIIDLSMD----------PPRNCAFVTYEKMESADQAVAELNGTQVE----   75 (97)
T ss_dssp             CCCSEEEEECS--SCC-HHHHHHHHTTTSCEEEEEEE----------TTTTEEEEEESSHHHHHHHHHHTTTEEET----
T ss_pred             CCCCEEEEcCC--CCC-HHHHHHHHhhCCCEEEEEec----------CCCCEEEEEECCHHHHHHHHHHhCCCeEC----
Confidence            46789999997  333 88999999999999999841          45999999999999999999999999986    


Q ss_pred             eceeeeeeecCCCCCCC
Q 013598          272 QKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       272 EK~ikcE~~~~~S~~~~  288 (439)
                      -+.|+++.+..+....+
T Consensus        76 g~~l~v~~a~~~~~~~~   92 (97)
T 1x5p_A           76 SVQLKVNIARKQPMLDS   92 (97)
T ss_dssp             TEEEEEECCSSCCCCCS
T ss_pred             CeEEEEEECCCCCCCCC
Confidence            35678888776655443

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=99.38  E-value=9.5e-13  Score=98.25  Aligned_cols=70  Identities=23%  Similarity=0.276  Sum_probs=58.7

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccC----C-------CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHH
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGV----P-------GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQL  260 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~v----G-------gvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk  260 (439)
                      ...-+|||+|||...+ +.+|+++|..+    |       .|.+++..  .        .||||||+|.+.++|.++| .
T Consensus         4 ~~~~~l~V~nLp~~~t-~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~--~--------~kg~afV~f~~~~~a~~A~-~   71 (87)
T 2hzc_A            4 GSARRLYVGNIPFGIT-EEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--Q--------DKNFAFLEFRSVDETTQAM-A   71 (87)
T ss_dssp             GGGGEEEEESCCTTCC-HHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC--S--------SSSEEEEEESSHHHHHHHG-G
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHHHHhhhcccccCCCCcceEEEec--C--------CCcEEEEEcCCHHHHHHHH-h
Confidence            3567999999999865 88999999999    7       78888632  1        1899999999999999999 9


Q ss_pred             hCCceecc--ceeec
Q 013598          261 FSRQIIAF--GKVQK  273 (439)
Q Consensus       261 ~NGq~~~f--gKVEK  273 (439)
                      +||..|.+  ++|++
T Consensus        72 l~g~~~~g~~l~V~r   86 (87)
T 2hzc_A           72 FDGIIFQGQSLKIRR   86 (87)
T ss_dssp             GTTCEETTEECEEEC
T ss_pred             cCCCEECCeEEEEeC
Confidence            99999886  55544

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.1e-12  Score=106.96  Aligned_cols=71  Identities=15%  Similarity=0.210  Sum_probs=60.3

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...++.+|||+|||...+ ++||+++|..+ .|.+|++.  .++ +|  .+||||||+|.+.++|.++| .+||+.|.+
T Consensus        12 ~~~~~~~v~V~nLp~~~t-e~dl~~~F~~~-~v~~v~i~--~d~-~g--~~~G~afV~F~~~~~a~~Al-~~~~~~~~g   82 (109)
T 2dnn_A           12 INPDDLYVSVHGMPFSAM-ENDVRDFFHGL-RVDAVHLL--KDH-VG--RNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ   82 (109)
T ss_dssp             CCHHHHEEEEECCCSSCC-HHHHHHHTTTS-CCCEEEEC--CCT-TC--CCCSEEEEECSSHHHHHHHH-HTTTEEETT
T ss_pred             CCCCCCEEEEeCCCCCCC-HHHHHHHhccC-CeeEEEEE--ECC-CC--CCCeEEEEEECCHHHHHHHH-hcCCCeECC
Confidence            345678999999999865 88999999999 89999844  444 34  78999999999999999999 689998774

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.37  E-value=7.3e-12  Score=105.64  Aligned_cols=85  Identities=18%  Similarity=0.156  Sum_probs=68.2

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccce-EEEeecCHHHHHHHHHHhCCceecccee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGF-AFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGF-AFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      .-.+|||+|||...+ +.+|+++|..+|.|.+|++.   .+       +|| |||.|.+.++|.++|+.+||+.|.++  
T Consensus        24 ~vl~l~V~NL~~~vt-~~~L~~~Fs~yG~V~~v~i~---~~-------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~--   90 (124)
T 2e5i_A           24 KVLLLSIQNPLYPIT-VDVLYTVCNPVGKVQRIVIF---KR-------NGIQAMVEFESVLCAQKAKAALNGADIYAG--   90 (124)
T ss_dssp             SEEEEEEESCCSCCC-HHHHHHHHTTTSCEEEEEEE---ES-------SSEEEEEEESSHHHHHHHHHHHTTCCCBTT--
T ss_pred             cEEEEEEcCcCCCCC-HHHHHHHHHhcCCEEEEEEE---eC-------CCCEEEEEECCHHHHHHHHHHhCCCEecCC--
Confidence            345678999999854 77999999999999999842   22       387 99999999999999999999999764  


Q ss_pred             eceeeeeeecCCCCCCCCC
Q 013598          272 QKQIRCEMVNSSSSNSVDG  290 (439)
Q Consensus       272 EK~ikcE~~~~~S~~~~~~  290 (439)
                      ...|+++.+...+-....+
T Consensus        91 ~~~l~V~~Ak~~~l~v~~n  109 (124)
T 2e5i_A           91 CCTLKIEYARPTRLNVIRN  109 (124)
T ss_dssp             BSEEEEECCSCSCCCCSSC
T ss_pred             CeEEEEEEecCCcceeecC
Confidence            4577888777666444433

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.37  E-value=1.2e-12  Score=105.90  Aligned_cols=68  Identities=16%  Similarity=0.309  Sum_probs=58.9

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      ++-+|||+|||.+.+ +.+|+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.  ++.+.
T Consensus         2 ~~~~l~v~nLp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~--~~~~~   69 (167)
T 2cjk_A            2 ESCKMFIGGLNWDTT-EDNLREYFGKYGTVTDLK--IMKDPATG--RSRGFGFLSFEKPSSVDEVVKT--QHILD   69 (167)
T ss_dssp             GGGEEEECSCCTTCC-HHHHHHHHTTTCCEEEEE--CCCCTTTS--SCCSCEEEEESSTHHHHHHHHS--CCEET
T ss_pred             CCcEEEEeCCCCCCC-HHHHHHHHHhCCCEEEEE--EEECCCCC--CccceEEEEEccHHHHHHHHhc--ccccC
Confidence            467999999999865 889999999999999998  56666686  8999999999999999999995  44443

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=3.5e-12  Score=106.30  Aligned_cols=82  Identities=16%  Similarity=0.162  Sum_probs=69.5

Q ss_pred             CCCCccE-EEEcCCCCCCch---HHHHHHHhccCC-CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCc
Q 013598          190 DMPSGIR-VRLLNLPKKKNI---HRDLKSAFKGVP-GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQ  264 (439)
Q Consensus       190 ~~~dgvR-VrVGNLPkk~ni---~kDL~~aFk~vG-gvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq  264 (439)
                      .+++..+ |||+|||.+.+.   .++|.++|..+| .|+.|         ||     |||||.|.+.+.|.++|+.+||+
T Consensus         4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---------tg-----G~AfV~F~~~esA~~A~~~l~G~   69 (96)
T 2diu_A            4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---------TG-----CSAILRFINQDSAERAQKRMENE   69 (96)
T ss_dssp             SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---------CT-----TCEEEEESSHHHHHHHHHHHTTC
T ss_pred             CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---------ec-----CEEEEEECCHHHHHHHHHHhcCC
Confidence            4566777 999999999774   236889999995 99998         53     99999999999999999999999


Q ss_pred             eeccceeeceeeeeeecCCCCCCCC
Q 013598          265 IIAFGKVQKQIRCEMVNSSSSNSVD  289 (439)
Q Consensus       265 ~~~fgKVEK~ikcE~~~~~S~~~~~  289 (439)
                      .|.    -|+|++..+..+|..-..
T Consensus        70 ~l~----gr~i~v~~A~~~sd~~~~   90 (96)
T 2diu_A           70 DVF----GNRIIVSFTPKNRELCET   90 (96)
T ss_dssp             CSS----SSCCEEESSCCSCCCCCC
T ss_pred             ccC----CceEEEEecCCCcceeEe
Confidence            976    688999999888876543

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=99.35  E-value=3.8e-12  Score=109.03  Aligned_cols=98  Identities=16%  Similarity=0.138  Sum_probs=76.8

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccce-EEEeecCHHHHHHHHHHhCCceeccce
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGF-AFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGF-AFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      ..-.+|||+|||...+ +.+|+++|..+|.|.+|++..  .       .||| |||.|.+.++|.++|+.+||+.|.+| 
T Consensus        26 s~VL~I~V~NL~~~vt-e~~L~~lFs~yG~V~~V~i~~--~-------~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~-   94 (130)
T 3zzy_A           26 SPVLRIIVENLFYPVT-LDVLHQIFSKFGTVLKIITFT--K-------NNQFQALLQYADPVSAQHAKLSLDGQNIYNA-   94 (130)
T ss_dssp             CSEEEEEEESCCSCCC-HHHHHHHHTTSSCEEEEEEEE--E-------TTEEEEEEEESCHHHHHHHHHHHTTCEEETT-
T ss_pred             CceEEEEECCCCCCCC-HHHHHHHHhCcCCEEEEEEEc--C-------CCCcEEEEEECCHHHHHHHHHHcCCCeecCC-
Confidence            3557899999999865 889999999999999997432  1       1799 99999999999999999999999875 


Q ss_pred             eeceeeeeeecCCCCCCCCCCCCCCCCCCCc
Q 013598          271 VQKQIRCEMVNSSSSNSVDGHSSDDTSGYPK  301 (439)
Q Consensus       271 VEK~ikcE~~~~~S~~~~~~~s~~s~~~~p~  301 (439)
                       -+.|+++.+...+-.-..++..+--++.|.
T Consensus        95 -~~~LrI~~ak~~~l~v~~n~~~srDyt~~~  124 (130)
T 3zzy_A           95 -CCTLRIDFSKLTSLNVKYNNDKSRDYTRPD  124 (130)
T ss_dssp             -EEEEEEEECSCSSCCCCCCSSSEEETTCTT
T ss_pred             -CcEEEEEecCCCceeEEecCCCcccCCCCC
Confidence             467888888776665555554443444443

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.35  E-value=1.8e-12  Score=127.31  Aligned_cols=84  Identities=13%  Similarity=0.164  Sum_probs=72.4

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ....+|||+|||..++ ..+|..+|..+|.|+.|.  +..++.||  .++|||||+|.+.++|.+||+.|||+.|.+   
T Consensus       100 ~~~~~lfV~nL~~~~t-e~~L~~~F~~~G~I~~v~--i~~d~~tg--~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g---  171 (437)
T 3pgw_S          100 DAFKTLFVARVNYDTT-ESKLRREFEVYGPIKRIH--MVYSKRSG--KPRGYAFIEYEHERDMHSAYKHADGKKIDG---  171 (437)
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHHHcCCeeEEE--eeccCCCC--CccceEEEeeccHHHHHHHHHHcCCCEECC---
Confidence            4567999999999865 889999999999999998  55666686  999999999999999999999999999873   


Q ss_pred             eceeeeeeecCCC
Q 013598          272 QKQIRCEMVNSSS  284 (439)
Q Consensus       272 EK~ikcE~~~~~S  284 (439)
                       +.|.|+++....
T Consensus       172 -r~i~V~~a~~~~  183 (437)
T 3pgw_S          172 -RRVLVDVERGRT  183 (437)
T ss_pred             -EEEEEEEeCCCC
Confidence             567777776543

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.35  E-value=3e-12  Score=112.75  Aligned_cols=79  Identities=11%  Similarity=0.098  Sum_probs=66.4

Q ss_pred             CCccEEEEcCCC-CCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          192 PSGIRVRLLNLP-KKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       192 ~dgvRVrVGNLP-kk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      +++.+|||+||| .+.+ ..+|+.+|..+|.|++|++  ..++       ||||||.|.+.++|.++|+.|||+.|.+  
T Consensus         2 ~~~~~l~V~nL~~~~~~-~~~L~~~F~~~G~v~~v~i--~~~~-------~g~afV~f~~~~~A~~Ai~~lng~~~~g--   69 (205)
T 3tyt_A            2 ADSPVLMVYGLDQSKMN-CDRVFNVFCLYGNVEKVKF--MKSK-------PGAAMVEMADGYAVDRAITHLNNNFMFG--   69 (205)
T ss_dssp             CCCSEEEEECCCTTTCC-HHHHHHHHTTTSCEEEEEE--CTTS-------TTCEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred             CCCCEEEEeCCCcccCC-HHHHHHHHHhcCCeEEEEE--ecCC-------CCEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence            467899999999 7754 7899999999999999984  3332       8999999999999999999999999874  


Q ss_pred             eeceeeeeeecCCC
Q 013598          271 VQKQIRCEMVNSSS  284 (439)
Q Consensus       271 VEK~ikcE~~~~~S  284 (439)
                        ++|+|..+...+
T Consensus        70 --~~l~v~~s~~~~   81 (205)
T 3tyt_A           70 --QKMNVCVSKQPA   81 (205)
T ss_dssp             --EECEEEECSCSC
T ss_pred             --ceEEEEEccCCc
Confidence              567777765443

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.35  E-value=2.5e-12  Score=103.34  Aligned_cols=66  Identities=20%  Similarity=0.192  Sum_probs=56.0

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...+.+|||+|||..++ +.||+++|..+|.|..+.+.  .+         |||||+|.+.++|.++|+.|||+.|.+
T Consensus        13 ~r~~~~l~V~nLp~~~t-~~~l~~~F~~~G~v~~~~i~--~~---------g~afV~f~~~~~a~~Ai~~l~g~~~~g   78 (115)
T 3beg_B           13 RRSENRVVVSGLPPSGS-WQDLKDHMREAGDVCYADVY--RD---------GTGVVEFVRKEDMTYAVRKLDNTKFRS   78 (115)
T ss_dssp             ----CCEEEEECCSSCC-TTHHHHHHGGGSCEEEEEEC--TT---------SEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred             CCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEEe--cC---------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            34678999999999865 88999999999999999732  11         999999999999999999999999886

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.34  E-value=5.3e-12  Score=95.51  Aligned_cols=78  Identities=12%  Similarity=0.196  Sum_probs=60.1

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ...-+|||+|||...+ +.+|+.+|..+|.|.++++.  .+       +||||||+|.+.++|.+    ++|+.+.+.  
T Consensus         3 ~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~i~--~~-------~~g~afV~f~~~~~a~~----~~~~~~~~~--   66 (88)
T 1wf0_A            3 SGSSGVFVGRCTGDMT-EDELREFFSQYGDVMDVFIP--KP-------FRAFAFVTFADDQIAQS----LCGEDLIIK--   66 (88)
T ss_dssp             SCCCEEEEESCCSSSC-HHHHHHHSTTTSCCCEEECC--SS-------CCSCCEEECSCHHHHHH----TTTCEEEET--
T ss_pred             CCCcEEEEeCCCCCCC-HHHHHHHHHHcCCeeEEEEe--cC-------CCCEEEEEECCHHHHHH----HhcCCceeC--
Confidence            4568999999999865 88999999999999999843  22       69999999999999964    577766543  


Q ss_pred             eceeeeeeecCCCC
Q 013598          272 QKQIRCEMVNSSSS  285 (439)
Q Consensus       272 EK~ikcE~~~~~S~  285 (439)
                      .+.+++..+..+..
T Consensus        67 g~~l~v~~a~~~~~   80 (88)
T 1wf0_A           67 GISVHISNAEPKHN   80 (88)
T ss_dssp             TEEEEEECCCCCCC
T ss_pred             CEEEEEEecCCCCC
Confidence            24556665555443

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.34  E-value=3.9e-12  Score=98.58  Aligned_cols=77  Identities=13%  Similarity=0.199  Sum_probs=58.0

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ..+...+|||||||.+.+ +.+|+++|..+|.|.++++..  +       +||||||+|.+.++|.    .++|..+.+.
T Consensus         7 ~~~~~~~l~V~~Lp~~~t-e~~L~~~F~~~G~i~~v~i~~--~-------srGfaFV~F~~~~~A~----~~~~~~~~~~   72 (89)
T 3d2w_A            7 HHHHGSKVFVGRCTEDMT-AEELQQFFCQYGEVVDVFIPK--P-------FRAFAFVTFADDKVAQ----SLCGEDLIIK   72 (89)
T ss_dssp             ----CCEEEEESCCTTCC-HHHHHHHHTTTSCEEEEECCS--S-------CCSEEEEEESCHHHHH----HHTTCEEEET
T ss_pred             CCCCCCEEEEeCCCCCCC-HHHHHHHHhccCCEEEEEEee--C-------CCCEEEEEECCHHHHH----HHcCCCcccC
Confidence            345788999999999865 889999999999999998442  2       6999999999999998    4788876642


Q ss_pred             eeeceeeeeeecC
Q 013598          270 KVQKQIRCEMVNS  282 (439)
Q Consensus       270 KVEK~ikcE~~~~  282 (439)
                        -+.+.+..+..
T Consensus        73 --g~~v~v~~a~~   83 (89)
T 3d2w_A           73 --GISVHISNAEP   83 (89)
T ss_dssp             --TEEEEEEECC-
T ss_pred             --CEEEEEEEcCC
Confidence              24455555543

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.33  E-value=1.3e-12  Score=111.21  Aligned_cols=80  Identities=18%  Similarity=0.197  Sum_probs=63.9

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      ...+.+|||+|||.+.+ ++||+++|..+| +++|+  ...++ +|  .+||||||+|.+.++|.++| .+||+.|..  
T Consensus        43 ~~~~~~lfV~nLp~~~t-e~dL~~~F~~~G-i~~v~--i~~d~-~g--~srGfaFV~F~~~e~A~~Al-~~~g~~l~g--  112 (139)
T 2hgn_A           43 STTGHCVHMRGLPYKAT-ENDIYNFFSPLN-PVRVH--IEIGP-DG--RVTGEADVEFATHEEAVAAM-SKDRANMQH--  112 (139)
T ss_dssp             --CCCCEECCSCCTTCC-HHHHHHHHCSCC-CSEEE--CCCSS-SS--CSSCCCEEECSHHHHHHHHT-TCCSCSSSS--
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHhcC-CeEEE--EEECC-CC--CCceEEEEEeCCHHHHHHHH-hhCCCEECC--
Confidence            35678999999999975 889999999999 88887  44554 34  89999999999999999999 789988763  


Q ss_pred             eeceeeeeeecC
Q 013598          271 VQKQIRCEMVNS  282 (439)
Q Consensus       271 VEK~ikcE~~~~  282 (439)
                        +.|++..+..
T Consensus       113 --R~i~V~~a~~  122 (139)
T 2hgn_A          113 --RYIELFLNST  122 (139)
T ss_dssp             --CCCCCEECCC
T ss_pred             --EEEEEEECCC
Confidence              3455555443

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=2e-12  Score=107.93  Aligned_cols=71  Identities=21%  Similarity=0.235  Sum_probs=59.4

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCe----eEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGI----INIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgv----isIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      ..+..+|||+|||.+++ +.||+++|..+|.|    ..|++  ..+ +||  .+||||||+|.+.++|.++|++ ||+.|
T Consensus        20 ~~~~~~v~V~nLp~~~t-e~dl~~~F~~~g~v~g~v~~v~i--~~d-~~g--r~~G~aFV~F~~~~~A~~Al~~-~~~~l   92 (123)
T 2dha_A           20 KENQVIVRMRGLPFTAT-AEEVVAFFGQHCPITGGKEGILF--VTY-PDG--RPTGDAFVLFACEEYAQNALRK-HKDLL   92 (123)
T ss_dssp             CCSCCEEEECSCCTTCC-HHHHHHHHHTTSCCTTGGGGEEE--EEC-TTS--CEEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHhhCCccCCcceEEE--EEC-CCC--CEeeEEEEEECCHHHHHHHHHh-CCCee
Confidence            45778999999999875 88999999999875    46663  334 365  8999999999999999999997 99886


Q ss_pred             cc
Q 013598          267 AF  268 (439)
Q Consensus       267 ~f  268 (439)
                      ..
T Consensus        93 ~g   94 (123)
T 2dha_A           93 GK   94 (123)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.32  E-value=4.3e-12  Score=106.89  Aligned_cols=69  Identities=25%  Similarity=0.350  Sum_probs=58.1

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCee--EEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGII--NIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvi--sIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...-+|||+|||.+.+ +.||+++|..+ +|+  +|+  ...++. |  .+||||||+|.+.++|.++|++ +|+.|.+
T Consensus        40 ~~~~~lfVgnLp~~~t-e~dL~~~F~~~-~i~~~~v~--i~~d~~-G--rsrGfaFV~F~~~e~A~~Al~~-~~~~l~g  110 (126)
T 2hgm_A           40 ANDGFVRLRGLPFGCT-KEEIVQFFSGL-EIVPNGIT--LPVDPE-G--KITGEAFVQFASQELAEKALGK-HKERIGH  110 (126)
T ss_dssp             SSCCEEEEECCCTTCC-HHHHHHHTTTS-CEEEEEEE--CCCCSS-S--SSCSEEEEEESSTTHHHHHHTT-TTCCBTT
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHhcC-CceeeEEE--EEECCC-C--CCceEEEEEECCHHHHHHHHHH-CCCEECC
Confidence            4567899999999965 88999999999 888  887  445543 4  8999999999999999999996 7777653

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=99.29  E-value=9.9e-12  Score=110.46  Aligned_cols=85  Identities=18%  Similarity=0.109  Sum_probs=68.9

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      ...+|||+|||...+ +.+|+++|..+|.|.+|++.   .++     .||||||.|.+.++|.++|+.+||+.|.++  -
T Consensus        45 ~vl~l~VgNL~~~vt-ed~L~~~Fs~fG~V~~V~i~---~k~-----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~--g  113 (164)
T 1sjr_A           45 PVLRIIVENLFYPVT-LDVLHQIFSKFGTVLKIITF---TKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNA--C  113 (164)
T ss_dssp             CEEEEEECSCCSCCC-HHHHHHHHHHHSCEEEEEEE---ESS-----SCEEEEEEESCHHHHHHHHHHSTTBCSSSS--C
T ss_pred             ceEEEEEeCcCCCCC-HHHHHHHHHhcCCEEEEEEE---eCC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCC--C
Confidence            457899999999854 88999999999999999842   221     389999999999999999999999999753  3


Q ss_pred             ceeeeeeecCCCCCCC
Q 013598          273 KQIRCEMVNSSSSNSV  288 (439)
Q Consensus       273 K~ikcE~~~~~S~~~~  288 (439)
                      +.|+++.+....-...
T Consensus       114 ~~L~V~~Ak~~~l~vk  129 (164)
T 1sjr_A          114 CTLRIDFSKLTSLNVK  129 (164)
T ss_dssp             SCEEEEECSSSSCCCC
T ss_pred             cEEEEEEecCCccccc
Confidence            5678887776654433

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.28  E-value=1.6e-11  Score=108.64  Aligned_cols=82  Identities=22%  Similarity=0.246  Sum_probs=68.2

Q ss_pred             CCCccEEEEcCCCCCCchHHHHH----HHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLK----SAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~----~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      ..+.-+|||+|||...+ +.+|+    ++|..+|.|.+|++..     ||  .+||||||+|.+.++|.++|+.+||..|
T Consensus         6 ~~~~~~l~V~nlp~~~~-~~~l~~~L~~~F~~~G~i~~v~~~~-----~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~   77 (282)
T 3pgw_A            6 TRPNHTIYINNLNEKIK-KDELKKSLYAIFSQFGQILDILVSR-----SL--KMRGQAFVIFKEVSSATNALRSMQGFPF   77 (282)
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHHHHhccCCeEEEEEcC-----CC--CcceEEEEEECCHHHHHHHHHHhcCCee
Confidence            35678999999999865 77866    9999999999997432     54  7899999999999999999999999998


Q ss_pred             ccceeeceeeeeeecCCC
Q 013598          267 AFGKVQKQIRCEMVNSSS  284 (439)
Q Consensus       267 ~fgKVEK~ikcE~~~~~S  284 (439)
                      .+    +.|+|+.+...+
T Consensus        78 ~g----~~l~v~~a~~~~   91 (282)
T 3pgw_A           78 YD----KPMRIQYAKTDS   91 (282)
T ss_pred             CC----cEEEEEEeccCc
Confidence            64    677777775544

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.27  E-value=1.2e-11  Score=103.62  Aligned_cols=85  Identities=8%  Similarity=0.099  Sum_probs=69.4

Q ss_pred             CCccEEEE--cCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee-cc
Q 013598          192 PSGIRVRL--LNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII-AF  268 (439)
Q Consensus       192 ~dgvRVrV--GNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~-~f  268 (439)
                      +++-+|||  ||||...+ +.+|+++|..+|.|.+|...      ++    ||||||+|.+.++|.++|+.+||+.| ..
T Consensus        23 ~pt~~L~V~Ng~L~~~~t-e~~L~~~F~~fG~v~~v~i~------~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~   91 (114)
T 2cq2_A           23 YATQSLVVANGGLGNGVS-RNQLLPVLEKCGLVDALLMP------PN----KPYSFARYRTTEESKRAYVTLNGKEVVDD   91 (114)
T ss_dssp             SCCSEEEEETCTGGGTCC-HHHHHHHHHHHSCEEEEECC------TT----CSCEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred             CCCCEEEEECCCCCCCCC-HHHHHHHHHhcCCeEEEEEe------CC----CCEEEEEECCHHHHHHHHHHhCCCEEccc
Confidence            45678999  77999865 88999999999999998742      22    89999999999999999999999998 32


Q ss_pred             -ceeeceeeeeeecCCCCCCC
Q 013598          269 -GKVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       269 -gKVEK~ikcE~~~~~S~~~~  288 (439)
                       |. -+++.+..+..-+.+.|
T Consensus        92 lg~-g~~l~v~~a~~~p~~~~  111 (114)
T 2cq2_A           92 LGQ-KITLYLNFVEKVQWSGP  111 (114)
T ss_dssp             TSC-EEECEEEEESCCCCSSC
T ss_pred             cCC-CcEEEEEecccCcccCC
Confidence             22 56788888876665554

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=1e-11  Score=94.70  Aligned_cols=80  Identities=13%  Similarity=0.121  Sum_probs=65.3

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ..+.+|||+|||...+ +.+|+.+|..+|.|.+++ ....++.||      .|||+|.+.++|.++|+.+||..|.+   
T Consensus        13 ~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~v~~~~-~i~~~~~~~------~afV~f~~~~~a~~Ai~~l~g~~~~g---   81 (96)
T 2e44_A           13 QRIRKLQIRNIPPHLQ-WEVLDSLLVQYGVVESCE-QVNTDSETA------VVNVTYSSKDQARQALDKLNGFQLEN---   81 (96)
T ss_dssp             CSCCCEEEEEECSSSC-HHHHHHHHHHHSCEEEEE-EECCSSSSE------EEEEEESSHHHHHHHHHHHTTCBCSS---
T ss_pred             CCCCEEEEEcCCCCCC-HHHHHHHHHhcCCeEEEE-EeecCCCCC------EEEEEECCHHHHHHHHHHhCCCEECC---
Confidence            3567999999999865 889999999999999983 034555554      39999999999999999999999873   


Q ss_pred             eceeeeeeecCC
Q 013598          272 QKQIRCEMVNSS  283 (439)
Q Consensus       272 EK~ikcE~~~~~  283 (439)
                       +.|+++.+...
T Consensus        82 -~~l~V~~a~~~   92 (96)
T 2e44_A           82 -FTLKVAYIPDE   92 (96)
T ss_dssp             -CBCEEEECCCC
T ss_pred             -cEEEEEEcCcc
Confidence             56777776654

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.26  E-value=3.2e-12  Score=104.75  Aligned_cols=83  Identities=18%  Similarity=0.249  Sum_probs=67.6

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ...++-+|||+|||...+ +.+|+.+|..+|.+..+   .+.+++||  .+||||||+|.+.++|.++|+ +||+.|.  
T Consensus         9 ~~~~~~~l~V~nLp~~~t-~~~l~~~f~~~g~~~~~---~~~~~~~~--~~~g~afV~f~~~~~a~~A~~-l~g~~~~--   79 (175)
T 1fje_B            9 ESTTPFNLFIGNLNPNKS-VAELKVAISELFAKNDL---AVVDVRTG--TNRKFGYVDFESAEDLEKALE-LTGLKVF--   79 (175)
T ss_dssp             SCSSSEEEEEECCCTTSC-HHHHHHHHHHHHHHHTC---CCCEEEEE--TTTTEEEEEESSHHHHHHHHH-GGGEEET--
T ss_pred             CCCCCcEEEEeCCCCCCC-HHHHHHHHHHhCCcceE---EEEECCCC--ccccEEEEEECCHHHHHHHHh-cCCCEeC--
Confidence            345788999999999865 88999999999987763   34555565  889999999999999999995 9999988  


Q ss_pred             eeeceeeeeeecCC
Q 013598          270 KVQKQIRCEMVNSS  283 (439)
Q Consensus       270 KVEK~ikcE~~~~~  283 (439)
                        .+.++++.+...
T Consensus        80 --g~~l~v~~~~~~   91 (175)
T 1fje_B           80 --GNEIKLEKPKGR   91 (175)
T ss_dssp             --TEEEEEECCCCS
T ss_pred             --CeEEEEecCCCc
Confidence              356677666554

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.23  E-value=3.1e-11  Score=105.56  Aligned_cols=81  Identities=16%  Similarity=0.098  Sum_probs=68.1

Q ss_pred             CCCccEEEEcCCCC-CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          191 MPSGIRVRLLNLPK-KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       191 ~~dgvRVrVGNLPk-k~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      .+++-+|||+|||. ..+ +.+|+++|..+|.|.+|+  ...++       ||||||+|.+.++|.++|+.+||+.|.+ 
T Consensus        31 ~~~~~~l~V~nLp~~~~t-e~~L~~~F~~~G~i~~v~--i~~~~-------~g~afV~F~~~~~A~~Ai~~l~g~~~~g-   99 (229)
T 2adc_A           31 GAGNSVLLVSNLNPERVT-PQSLFILFGVYGDVQRVK--ILFNK-------KENALVQMADGNQAQLAMSHLNGHKLHG-   99 (229)
T ss_dssp             CCCCSEEEEESCCTTTCC-HHHHHHHHHHHTCEEEEE--ECCTT-------SCCEEEEESCHHHHHHHHHHHTTCBCSS-
T ss_pred             CCCCCEEEEeCCCcccCC-HHHHHHHHHhCCCeEEEE--EEECC-------CCEEEEEECCHHHHHHHHHHhCCCeECC-
Confidence            45788999999999 765 889999999999999998  33342       8999999999999999999999999863 


Q ss_pred             eeeceeeeeeecCCCC
Q 013598          270 KVQKQIRCEMVNSSSS  285 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~  285 (439)
                         +.++|+.+...+.
T Consensus       100 ---~~l~v~~a~~~~~  112 (229)
T 2adc_A          100 ---KPIRITLSKHQNV  112 (229)
T ss_dssp             ---SBCEEECCSCCCC
T ss_pred             ---eEEEEEEecCccc
Confidence               6777777765543

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.23  E-value=2e-11  Score=100.19  Aligned_cols=74  Identities=15%  Similarity=0.198  Sum_probs=63.7

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ..+.-||||||+...+ +.+|+++|..+|.|.++++..          .||||||.|.++++|+++|+.+||..+.    
T Consensus         5 ~~~~wL~VgNL~~~~t-e~~L~~lF~q~G~V~~~~l~~----------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~----   69 (89)
T 2wbr_A            5 WGSSWLLLKNLTAQID-GPTLRTLCMQHGPLVSFHPYL----------NQGIALCKYTTREEANKAQMALNNCVLA----   69 (89)
T ss_dssp             CCCCEEEEECCCTTCC-CHHHHHHHHHHSCEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHTTEEET----
T ss_pred             CccceEEEeCCCccCC-HHHHHHHHHhhCCEEEEEEcC----------CCcEEEEEECCHHHHHHHHHHhcCCEEC----
Confidence            4678999999999865 889999999999999998421          3999999999999999999999999987    


Q ss_pred             eceeeeeee
Q 013598          272 QKQIRCEMV  280 (439)
Q Consensus       272 EK~ikcE~~  280 (439)
                      -+.|+...|
T Consensus        70 gr~I~V~~A   78 (89)
T 2wbr_A           70 NTTIFAESP   78 (89)
T ss_dssp             TEEEEEECC
T ss_pred             CcEEEEEEC
Confidence            455665555

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.23  E-value=3.5e-11  Score=101.03  Aligned_cols=78  Identities=17%  Similarity=0.137  Sum_probs=66.0

Q ss_pred             CccEEEEcCCCC-CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          193 SGIRVRLLNLPK-KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       193 dgvRVrVGNLPk-k~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      .+-+|||+|||. ..+ +.+|+.+|..+|.|.+|+  ...++       ||||||+|.+.++|.++|+.+||..|.    
T Consensus         2 ~~~~l~v~nlp~~~~~-~~~l~~~F~~~G~i~~v~--i~~~~-------~g~afV~f~~~~~a~~A~~~l~~~~~~----   67 (198)
T 1qm9_A            2 GNSVLLVSNLNPERVT-PQSLFILFGVYGDVQRVK--ILFNK-------KENALVQMADGNQAQLAMSHLNGHKLH----   67 (198)
T ss_dssp             CCCEEEEECCCSSSCC-HHHHHHHHHTTCCCSEEE--CSTTC-------SSCCEEECTTTHHHHHHHHHHTTCCCS----
T ss_pred             CCcEEEEeCCCcccCC-HHHHHHHHHhcCCEEEEE--EEeCC-------CCEEEEEECCHHHHHHHHHHhCCCeec----
Confidence            357999999999 765 889999999999999997  33332       899999999999999999999999986    


Q ss_pred             eceeeeeeecCCC
Q 013598          272 QKQIRCEMVNSSS  284 (439)
Q Consensus       272 EK~ikcE~~~~~S  284 (439)
                      .+.++|+.+...+
T Consensus        68 g~~l~v~~a~~~~   80 (198)
T 1qm9_A           68 GKPIRITLSKHQN   80 (198)
T ss_dssp             SCCCEEEECCCCS
T ss_pred             CeEEEEEEecCCC
Confidence            3677787776554

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.22  E-value=1.1e-10  Score=93.00  Aligned_cols=88  Identities=17%  Similarity=0.193  Sum_probs=70.2

Q ss_pred             CCCCCccEEEEcCCCCCCc----------hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHH
Q 013598          189 EDMPSGIRVRLLNLPKKKN----------IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFV  258 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~n----------i~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfI  258 (439)
                      ....++-+|+|.||.....          +..||+++|..+|.|.+|.+   .++     .+||||||+|.+.++|.++|
T Consensus        10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i---~~~-----~~~G~afV~f~~~~~A~~Ai   81 (112)
T 2dit_A           10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL---FDR-----HPDGVASVSFRDPEEADYCI   81 (112)
T ss_dssp             CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE---ETT-----CTTCEEEEECSCHHHHHHHH
T ss_pred             CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE---ecC-----CCCEEEEEEECCHHHHHHHH
Confidence            3445678899999954332          24699999999999999964   333     36999999999999999999


Q ss_pred             HHhCCceeccceeeceeeeeeecCCCCCCC
Q 013598          259 QLFSRQIIAFGKVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       259 Ek~NGq~~~fgKVEK~ikcE~~~~~S~~~~  288 (439)
                      +.+||+.|.    -+.|+|+.+........
T Consensus        82 ~~lng~~~~----gr~l~v~~a~~~~~~~~  107 (112)
T 2dit_A           82 QTLDGRWFG----GRQITAQAWDGTTDYQS  107 (112)
T ss_dssp             HHSTTCEET----TEECEEEECCSCCCSSC
T ss_pred             HHcCCCEEC----CcEEEEEEeCCCCCccc
Confidence            999999986    46788998877665544

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.18  E-value=8.2e-11  Score=95.20  Aligned_cols=84  Identities=12%  Similarity=0.038  Sum_probs=66.3

Q ss_pred             CCCccEEEEcCCCCC----CchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          191 MPSGIRVRLLNLPKK----KNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk----~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      ..++-.|+|.||.-.    ..+..||++.|..+|.|.++++.  .++.|+ +..||||||+|.+.++|.++|+.+||+.|
T Consensus         5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~--~~~~~~-~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~   81 (105)
T 2pe8_A            5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIF--EIPGAP-DDEAVRIFLEFERVESAIKAVVDLNGRYF   81 (105)
T ss_dssp             GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEE--ECSSCC-TTTSEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred             CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEe--cCCCCC-CCCcEEEEEEECCHHHHHHHHHHHCCCEE
Confidence            356778999999731    12477999999999999999854  444342 36799999999999999999999999998


Q ss_pred             ccceeeceeeeeeec
Q 013598          267 AFGKVQKQIRCEMVN  281 (439)
Q Consensus       267 ~fgKVEK~ikcE~~~  281 (439)
                      .+    +.|+|+.+.
T Consensus        82 ~G----r~i~v~~a~   92 (105)
T 2pe8_A           82 GG----RVVKACFYN   92 (105)
T ss_dssp             TT----EECEEEECC
T ss_pred             CC----cEEEEEEcC
Confidence            63    567777664

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.14  E-value=8.4e-11  Score=95.45  Aligned_cols=72  Identities=21%  Similarity=0.277  Sum_probs=57.3

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCC-----------CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVP-----------GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF  261 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vG-----------gvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~  261 (439)
                      +.-+|||+|||.+.+ +.+|+++|..+|           .|.+++        ++  .+||||||+|.+.++|.++| .+
T Consensus         3 ~~~~l~V~nLp~~~t-~~~l~~~F~~~g~~~g~~~~~~~~v~~~~--------~~--~~~g~afV~f~~~~~A~~A~-~~   70 (172)
T 2g4b_A            3 SARRLYVGNIPFGIT-EEAMMDFFNAQMRLGGLTQAPGNPVLAVQ--------IN--QDKNFAFLEFRSVDETTQAM-AF   70 (172)
T ss_dssp             GGGEEEEESCCTTCC-HHHHHHHHHHHHHHTTCCSSSSCSEEEEE--------EE--TTTTEEEEEESSHHHHHHHG-GG
T ss_pred             cccEEEEcCCCcccC-HHHHHHHHHHHhhhcccccCCCCceeeeE--------ec--CCCCEEEEEeCCHHHHHHHH-Hh
Confidence            456999999999865 889999999994           444443        32  45999999999999999999 89


Q ss_pred             CCceeccceeeceeeeeee
Q 013598          262 SRQIIAFGKVQKQIRCEMV  280 (439)
Q Consensus       262 NGq~~~fgKVEK~ikcE~~  280 (439)
                      ||+.|.+    +.++++.+
T Consensus        71 ~~~~~~g----~~i~v~~~   85 (172)
T 2g4b_A           71 DGIIFQG----QSLKIRRP   85 (172)
T ss_dssp             TTCEETT----EECEEECC
T ss_pred             CCcEecC----ceeeecCC
Confidence            9999874    34555543

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.13  E-value=1.5e-10  Score=95.99  Aligned_cols=83  Identities=17%  Similarity=0.159  Sum_probs=58.8

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEee--c-cccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIP--V-VSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkp--A-v~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      .+-+|||+|||.+.+ +.+|+++|..+|.|..+.+  . .+.+.+++  .+||||||+|.+.++|.++| .+||+.|.+ 
T Consensus         3 ~~~~l~V~nLp~~~t-e~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~--~~~g~afV~F~~~~~A~~Al-~l~g~~~~g-   77 (198)
T 2yh0_A            3 MARRLYVGNIPFGIT-EEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIFQG-   77 (198)
T ss_dssp             -CCEEEEESCCTTCC-HHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE--TTTTEEEEEESCSHHHHHHG-GGTTEEETT-
T ss_pred             ceeEEEEcCCCCCCC-HHHHHHHHHHHHhhcccccCCCCceEEeEec--CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC-
Confidence            457999999999865 8899999999953222110  0 11111232  56999999999999999999 899999874 


Q ss_pred             eeeceeeeeeecCC
Q 013598          270 KVQKQIRCEMVNSS  283 (439)
Q Consensus       270 KVEK~ikcE~~~~~  283 (439)
                         +.++|..+...
T Consensus        78 ---~~i~v~~~~~~   88 (198)
T 2yh0_A           78 ---QSLKIRRPHDY   88 (198)
T ss_dssp             ---EEEEEECCCCC
T ss_pred             ---ceEEEeCCCCC
Confidence               45566655443

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.13  E-value=1.7e-10  Score=103.04  Aligned_cols=78  Identities=19%  Similarity=0.279  Sum_probs=65.7

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ......-+|||+|||...+ ..+|+.+|..+|.|.+|++  .        ..||||||+|.+.++|.++|+.+||..|.+
T Consensus        17 ~~~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~i--~--------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g   85 (261)
T 3sde_A           17 KTYTQRCRLFVGNLPTDIT-EEDFKRLFERYGEPSEVFI--N--------RDRGFGFIRLESRTLAEIAKAELDGTILKS   85 (261)
T ss_dssp             CSSCGGGEEEEESCCTTCC-HHHHHHHTGGGCCCSEEEE--E--------TTTTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCCCCEEEEECCCCCCC-HHHHHHHHHhcCCEEEEEE--e--------CCCcEEEEEECCHHHHHHHHHHcCCcEECC
Confidence            3446778999999999865 8899999999999999984  2        238999999999999999999999999874


Q ss_pred             ceeeceeeeeeec
Q 013598          269 GKVQKQIRCEMVN  281 (439)
Q Consensus       269 gKVEK~ikcE~~~  281 (439)
                          +.++|..+.
T Consensus        86 ----~~l~v~~a~   94 (261)
T 3sde_A           86 ----RPLRIRFAT   94 (261)
T ss_dssp             ----EECEEEECC
T ss_pred             ----ceeEeeecc
Confidence                556666654

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.12  E-value=2.4e-10  Score=92.28  Aligned_cols=83  Identities=16%  Similarity=0.129  Sum_probs=65.1

Q ss_pred             CccEEEEcCC--CCCCc-------hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC
Q 013598          193 SGIRVRLLNL--PKKKN-------IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR  263 (439)
Q Consensus       193 dgvRVrVGNL--Pkk~n-------i~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NG  263 (439)
                      ++-.|.|.|+  |.+..       +..||++.|..+|.|.+|++  ..++.|+.+..||||||+|.+.++|.++|+.+||
T Consensus         4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i--~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG   81 (105)
T 3v4m_A            4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEI--PRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG   81 (105)
T ss_dssp             CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEEC--CCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEE--eccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence            4556889998  54422       34689999999999999984  4455454457899999999999999999999999


Q ss_pred             ceeccceeeceeeeeeec
Q 013598          264 QIIAFGKVQKQIRCEMVN  281 (439)
Q Consensus       264 q~~~fgKVEK~ikcE~~~  281 (439)
                      +.|.    -++|+|+.++
T Consensus        82 ~~f~----GR~i~v~~~~   95 (105)
T 3v4m_A           82 RKFA----NRVVVTKYCD   95 (105)
T ss_dssp             CEET----TEECEEEEEC
T ss_pred             CEeC----CCEEEEEEeC
Confidence            9986    3567776654

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=99.10  E-value=1.9e-10  Score=100.98  Aligned_cols=69  Identities=23%  Similarity=0.241  Sum_probs=57.9

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ..-+|||+|||...+ +.+|+++|..+|.|.+|++....   +|  .+||||||+|++.++|.++|+.+++ .|.+
T Consensus       108 ~~~~l~V~nLp~~~t-~~~L~~~F~~~G~v~~v~i~~~~---~~--~~kG~aFVeF~~~e~A~~A~~~~~~-~~~G  176 (193)
T 2voo_A          108 KNRSVYIKGFPTDAT-LDDIKEWLEDKGQVLNIQMRRTL---HK--AFKGSIFVVFDSIESAKKFVETPGQ-KYKE  176 (193)
T ss_dssp             HHTEEEEECCCTTCC-HHHHHHHHTTSCCEEEEEEEECT---TC--CEEEEEEEEESSHHHHHHHHHCTTC-EETT
T ss_pred             ccCEEEecCCCCcCC-HHHHHHHHhcCCCEEEEEEEECC---CC--CcccEEEEEECCHHHHHHHHHhCCC-eECC
Confidence            457899999999865 88999999999999999855432   33  7899999999999999999987654 6654

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=99.09  E-value=1.8e-10  Score=107.06  Aligned_cols=82  Identities=16%  Similarity=0.156  Sum_probs=64.9

Q ss_pred             CCccEEEEcCCCCCCc--------hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC
Q 013598          192 PSGIRVRLLNLPKKKN--------IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR  263 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~n--------i~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NG  263 (439)
                      ...-+|||||||...+        .+.+|+.+|..+|.|.+|++  ..+        ||||||+|.+.++|.++|+.+||
T Consensus       132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v--~~~--------kG~AFV~F~~~~~Ae~A~~am~g  201 (240)
T 3u1l_A          132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRY--VES--------KNCGFVKFKYQANAEFAKEAMSN  201 (240)
T ss_dssp             CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEE--EGG--------GTEEEEEESSHHHHHHHHHHHTT
T ss_pred             cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEE--ECC--------CCEEEEEeCCHHHHHHHHHHhCC
Confidence            4577999999999753        37899999999999999983  332        89999999999999999999999


Q ss_pred             ceecc---c-----eeeceeeeeeecCC
Q 013598          264 QIIAF---G-----KVQKQIRCEMVNSS  283 (439)
Q Consensus       264 q~~~f---g-----KVEK~ikcE~~~~~  283 (439)
                      +.|..   .     .=-+.|.+..++..
T Consensus       202 ~~l~~~~~~e~~~~~~gr~L~V~wA~~~  229 (240)
T 3u1l_A          202 QTLLLPSDKEWDDRREGTGLLVKWANED  229 (240)
T ss_dssp             CCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred             CEEeccccccccccCCCCEEEEEEccCC
Confidence            99820   0     01356777777654

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=99.09  E-value=1.1e-10  Score=102.63  Aligned_cols=69  Identities=14%  Similarity=0.083  Sum_probs=61.3

Q ss_pred             cEEEEcCC----CCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecC-----HHH---HHHHHH--H
Q 013598          195 IRVRLLNL----PKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFES-----EDY---ATRFVQ--L  260 (439)
Q Consensus       195 vRVrVGNL----Pkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~s-----eEd---A~rfIE--k  260 (439)
                      ..||||||    |..++ +.+|+.+|+.+|.|.+++  .+.|+.||  .+||||||.|.+     .+.   |.++|+  .
T Consensus         3 ~kI~VgnL~~~~~~~tt-e~~Lk~~Fs~fGeV~~~~--li~Dp~Tg--~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~   77 (136)
T 2j8a_A            3 CEIVVYPAQDSTTTNIQ-DISIKNYFKKYGEISHFE--AFNDPNSA--LPLHVYLIKYASSDGKINDAAKAAFSAVRKHE   77 (136)
T ss_dssp             CEEEEEESSSSCCCCCC-HHHHHHHHHTTSCCSEEE--EEECTTTC--CEEEEEEEECC------CCHHHHHHHHHHHTT
T ss_pred             cEEEEeCCCCCCCCCCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--ceeeEEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            57999999    99865 889999999999999998  88999998  999999999996     333   899999  8


Q ss_pred             hCCceecc
Q 013598          261 FSRQIIAF  268 (439)
Q Consensus       261 ~NGq~~~f  268 (439)
                      +||+.|.+
T Consensus        78 lng~~I~G   85 (136)
T 2j8a_A           78 SSGCFIMG   85 (136)
T ss_dssp             TTCEEETT
T ss_pred             hcCCeecC
Confidence            89999986

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=98.97  E-value=1.9e-09  Score=89.61  Aligned_cols=85  Identities=12%  Similarity=0.153  Sum_probs=65.2

Q ss_pred             CccEEEEcCCCCC----CchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          193 SGIRVRLLNLPKK----KNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       193 dgvRVrVGNLPkk----~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ++-.|+|.|+--.    ..+..||++.|..+|.|.+|++.....-..+.+..||||||+|.+.++|.++|+.+||+.|.+
T Consensus        19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G   98 (118)
T 3ue2_A           19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG   98 (118)
T ss_dssp             SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence            5668999998421    136789999999999999998554332111234678999999999999999999999999863


Q ss_pred             ceeeceeeeeeec
Q 013598          269 GKVQKQIRCEMVN  281 (439)
Q Consensus       269 gKVEK~ikcE~~~  281 (439)
                          +.|+|+.++
T Consensus        99 ----R~i~v~~~~  107 (118)
T 3ue2_A           99 ----RKVVAEVYD  107 (118)
T ss_dssp             ----EECEEEEEC
T ss_pred             ----cEEEEEEcC
Confidence                566776653

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=98.96  E-value=9.2e-10  Score=106.99  Aligned_cols=67  Identities=7%  Similarity=0.073  Sum_probs=57.8

Q ss_pred             CCCCccEEEEcCC--CCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          190 DMPSGIRVRLLNL--PKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       190 ~~~dgvRVrVGNL--Pkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      .++++-+||||||  +...+ +.+|+++|..+|.|.+|+..      ++    ||||||+|.+.++|.++|+.+||+.+.
T Consensus        14 ~~~ps~~l~VgN~gl~~~~t-e~~L~~~F~~~G~V~~v~~~------~~----kgfaFV~f~~~~~A~~Ai~~lnG~~~~   82 (345)
T 3tht_A           14 VSYATQSLVVANGGLGNGVS-RNQLLPVLEKCGLVDALLMP------PN----KPYSFARYRTTEESKRAYVTLNGKEVV   82 (345)
T ss_dssp             CSSCCSEEEEETCSGGGTCC-HHHHHHHHHTTSCEEEEECC------TT----CSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred             cCCCCCEEEEEcCCCCCCCC-HHHHHHHHHhcCCeEEEEEe------CC----CCEEEEEECCHHHHHHHHHHhCCCccc
Confidence            3568889999995  66644 88999999999999998742      13    899999999999999999999999984

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=1.1e-08  Score=83.00  Aligned_cols=80  Identities=15%  Similarity=0.141  Sum_probs=62.2

Q ss_pred             ccEEEEcCCCCCC-----ch-HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          194 GIRVRLLNLPKKK-----NI-HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       194 gvRVrVGNLPkk~-----ni-~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      .-||.|.-.++..     ++ +.+|+++|..+|.|..|++.    +     .+||||||+|.+.++|.++|+.++|..  
T Consensus        10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~-----~~rGfaFVeF~~~~~A~~Ai~~~~~~~--   78 (100)
T 2d9o_A           10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----S-----KKPGTAVVEFATVKAAELAVQNEVGLV--   78 (100)
T ss_dssp             SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----S-----SSSSEEEEEESCHHHHHHHHHTCCBCS--
T ss_pred             cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----c-----CCCCEEEEEECCHHHHHHHHHhcCCCC--
Confidence            4578887776531     12 77999999999999999854    1     469999999999999999999866632  


Q ss_pred             cceeeceeeeeeecCCCCCCC
Q 013598          268 FGKVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       268 fgKVEK~ikcE~~~~~S~~~~  288 (439)
                          -++|++..+....+...
T Consensus        79 ----g~~l~V~~a~~~~~~~~   95 (100)
T 2d9o_A           79 ----DNPLKISWLEGQPQDAS   95 (100)
T ss_dssp             ----SSBCEEECSSCCCCCCS
T ss_pred             ----CCeEEEEEccCCCCCCC
Confidence                56788888877665443

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=98.79  E-value=1.3e-08  Score=81.87  Aligned_cols=60  Identities=15%  Similarity=0.172  Sum_probs=47.4

Q ss_pred             HHHHHh-ccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeee
Q 013598          211 DLKSAF-KGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEM  279 (439)
Q Consensus       211 DL~~aF-k~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~  279 (439)
                      ||++.| ..+|.|.+|++.  .++ +|  ..||||||+|.+.++|.++|+.+||+.|.+    +.|+|+.
T Consensus        42 dl~~~f~~~~G~V~~v~i~--~~~-~~--~~~G~~fV~f~~~~~A~~A~~~lng~~~~G----r~i~v~~  102 (104)
T 1jmt_A           42 EVFTEMEEKYGEVEEMNVC--DNL-GD--HLVGNVYVKFRREEDAEKAVIDLNNRWFNG----QPIHAEL  102 (104)
T ss_dssp             HHHHHHHHHTCCEEEEEEC--CSS-SS--SSEEEEEEEESCHHHHHHHHHHHTTCEETT----EECCEEE
T ss_pred             HHHHHhhccCCceEEEEEE--eCC-CC--CccEEEEEEECCHHHHHHHHHHHCCCEECC----EEEEEEE
Confidence            444555 999999999854  343 33  789999999999999999999999999874    4555554

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=98.65  E-value=4.5e-08  Score=81.02  Aligned_cols=76  Identities=22%  Similarity=0.215  Sum_probs=58.6

Q ss_pred             ccEEEEcCCCCCC---------chHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCc
Q 013598          194 GIRVRLLNLPKKK---------NIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQ  264 (439)
Q Consensus       194 gvRVrVGNLPkk~---------ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq  264 (439)
                      +-.|.|.|+=-..         .|..||++.|..+|.|.+|++  ..+  +    .||||||+|.+.++|.++|+.+||+
T Consensus         7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i--~~~--~----~~G~~fV~f~~~e~A~~Ai~~lnG~   78 (114)
T 3s6e_A            7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV--DKN--S----AQGNVYVKCPSIAAAIAAVNALHGR   78 (114)
T ss_dssp             CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEE--CTT--C----TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred             CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEE--ecC--C----CcEEEEEEECCHHHHHHHHHHhCCC
Confidence            3457778873321         235689999999999999984  223  3    2999999999999999999999999


Q ss_pred             eeccceeeceeeeeeec
Q 013598          265 IIAFGKVQKQIRCEMVN  281 (439)
Q Consensus       265 ~~~fgKVEK~ikcE~~~  281 (439)
                      .|.+    +.|+|+.+.
T Consensus        79 ~f~G----R~i~v~~~~   91 (114)
T 3s6e_A           79 WFAG----KMITAAYVP   91 (114)
T ss_dssp             EETT----EECEEEEEC
T ss_pred             EECC----EEEEEEEEc
Confidence            9874    466777664

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.35  E-value=2e-06  Score=73.32  Aligned_cols=79  Identities=13%  Similarity=0.035  Sum_probs=62.0

Q ss_pred             CCCCCCCccEEEEcCCCCC-CchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecC-HHHHHHHHHHhC--
Q 013598          187 EPEDMPSGIRVRLLNLPKK-KNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFES-EDYATRFVQLFS--  262 (439)
Q Consensus       187 ~~e~~~dgvRVrVGNLPkk-~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~s-eEdA~rfIEk~N--  262 (439)
                      +.-.-+.|.-|||+|||.. ++ ++||+++|+.+|.|..|.  ...++        -+|||.|.+ +..|.++|+++|  
T Consensus        11 ~~~~~~~G~il~v~~l~~~~~s-redLke~F~~~G~V~~Vd--~~~g~--------~tgfVrf~~~~~~A~~av~~ln~~   79 (121)
T 1owx_A           11 GSLEEKIGCLLKFSGDLDDQTC-REDLHILFSNHGEIKWID--FVRGA--------KEGIILFKEKAKEALGKAKDANNG   79 (121)
T ss_dssp             CCCSCCCCCEEEEEESCCSSCC-HHHHHHHTCSSCCEEEEE--CCTTC--------SEEEEEESSCHHHHHHHHHHTTTS
T ss_pred             CcccccCCeEEEEecCCCCcCC-HHHHHHHHHhcCCEEEEE--EecCC--------CEEEEEECCChHHHHHHHHHhhcC
Confidence            4556789999999999998 65 889999999999999997  44443        259999999 899999999995  


Q ss_pred             Cceeccceeeceeeeeee
Q 013598          263 RQIIAFGKVQKQIRCEMV  280 (439)
Q Consensus       263 Gq~~~fgKVEK~ikcE~~  280 (439)
                      |..|..    ..++++++
T Consensus        80 ~~~i~g----~~~~~evL   93 (121)
T 1owx_A           80 NLQLRN----KEVTWEVL   93 (121)
T ss_dssp             CBCTTS----SSEEEEEC
T ss_pred             CcEEeC----cEEEEEEC
Confidence            444442    34455544

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.32  E-value=1.3e-06  Score=75.95  Aligned_cols=68  Identities=12%  Similarity=0.175  Sum_probs=55.6

Q ss_pred             hHHHHHHHhccCCCeeEEeeccc--cCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeec
Q 013598          208 IHRDLKSAFKGVPGIINIIPVVS--GNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVN  281 (439)
Q Consensus       208 i~kDL~~aFk~vGgvisIkpAv~--~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ikcE~~~  281 (439)
                      ++.||.+.|..+|.|.++++...  .++.|+  .-|||+||.|.+.++|.++|+.+||+.|.+    ++|.|+..+
T Consensus       142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~--~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g----r~i~~~~~~  211 (222)
T 3dxb_A          142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDA--EIIVKIFVEFSIASETHKAIQALNGRWFAG----RKVVAEVYD  211 (222)
T ss_dssp             HHHHHHHHHTTTSCEEEEEEEEEECCSSTTC--CEEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBCEEEECC
T ss_pred             HHHHHHHHHHccCCeEEEEEecCCCCcccCc--CceeEEEEEECCHHHHHHHHHHhcCceECC----eEEEEEEcC
Confidence            57799999999999999985432  344444  679999999999999999999999999773    567777654

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=4.2e-06  Score=69.19  Aligned_cols=65  Identities=15%  Similarity=0.111  Sum_probs=51.9

Q ss_pred             CCCccEEEEcCCC---CC----CchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC
Q 013598          191 MPSGIRVRLLNLP---KK----KNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR  263 (439)
Q Consensus       191 ~~dgvRVrVGNLP---kk----~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NG  263 (439)
                      .|++-+|.|-.+|   +.    -++.-+|.+.|..+|.|+.++  .+.          +++||+|.+.+.|.++|+ +||
T Consensus         4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr--~~~----------d~~fVtF~d~~sAlaAi~-mnG   70 (91)
T 2dnr_A            4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIR--FVE----------DKMWVTFLEGSSALNVLS-LNG   70 (91)
T ss_dssp             CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEE--ECS----------SSEEEEESSHHHHHHGGG-GTT
T ss_pred             CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEE--Eec----------CCEEEEECChHHHHHHHh-cCC
Confidence            4677788887776   12    122368999999999999998  333          348999999999999999 999


Q ss_pred             ceecc
Q 013598          264 QIIAF  268 (439)
Q Consensus       264 q~~~f  268 (439)
                      +.|.+
T Consensus        71 ~~v~G   75 (91)
T 2dnr_A           71 KELLN   75 (91)
T ss_dssp             CEETT
T ss_pred             eEeCC
Confidence            99886

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.74  E-value=3.3e-05  Score=64.52  Aligned_cols=67  Identities=10%  Similarity=0.109  Sum_probs=54.9

Q ss_pred             CCCCCccEEEEcCCCC--------CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHH
Q 013598          189 EDMPSGIRVRLLNLPK--------KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQL  260 (439)
Q Consensus       189 e~~~dgvRVrVGNLPk--------k~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk  260 (439)
                      .-.|+.-||.|-.++-        .-++.-+|.+.|..+|.|+.+|  .+.++          +||||.+.+.|.++|+ 
T Consensus        10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr--~v~d~----------~fVtF~d~~sAl~AI~-   76 (95)
T 1ufw_A           10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVR--INQGQ----------MLVTFADSHSALSVLD-   76 (95)
T ss_dssp             CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEE--EETTE----------EEEECSCSHHHHHHHH-
T ss_pred             ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEE--EecCc----------EEEEEcChHHHHHHHh-
Confidence            3457888999998872        2122357999999999999998  55552          9999999999999999 


Q ss_pred             hCCceecc
Q 013598          261 FSRQIIAF  268 (439)
Q Consensus       261 ~NGq~~~f  268 (439)
                      +||+.|.+
T Consensus        77 ldG~~v~G   84 (95)
T 1ufw_A           77 VDGMKVKG   84 (95)
T ss_dssp             GGGSEETT
T ss_pred             cCCeeeCC
Confidence            99999986

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=97.64  E-value=6e-06  Score=65.95  Aligned_cols=67  Identities=7%  Similarity=0.116  Sum_probs=35.9

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKK  206 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~  206 (439)
                      +++||||++.|.+.+.+++++++|.+.. .++.+.+..+.+++...        ...........+|||+|||...
T Consensus        42 ~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~--------~~~~~~~~~~~~lyv~Nl~~~~  109 (115)
T 4f25_A           42 NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE--------AELGARAKEFTNVYIKNFGPGS  109 (115)
T ss_dssp             TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC--------------------------------
T ss_pred             CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccc--------cccccccCCCCceEeCCCCCCc
Confidence            4679999999999999999999999977 88888887655433211        1111223344579999999974

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=97.00  E-value=0.00029  Score=54.03  Aligned_cols=64  Identities=9%  Similarity=-0.010  Sum_probs=49.0

Q ss_pred             CCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCC
Q 013598          134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLP  203 (439)
Q Consensus       134 PrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLP  203 (439)
                      ++|||++.|.+.+.+++++++|.+.. .++.+.+..++..+...      +....+..+...-++|||||+
T Consensus        36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~------~~~~~~~~~~~~~~ifvg~L~  100 (101)
T 2hvz_A           36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS------RFDRPPARRKLLEVLFNGPLE  100 (101)
T ss_dssp             SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS------CCCSCCCSCCCCSCCCSCCCC
T ss_pred             CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc------cCCCCCccccCCCceecCCCC
Confidence            79999999999999999999999877 77888877766655321      112233455667889999997

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=95.85  E-value=0.033  Score=45.62  Aligned_cols=70  Identities=16%  Similarity=0.225  Sum_probs=55.2

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .|-|.+||.... +.++.+.+...+.+.-++= +-++. +.++..-.=||++|++.+++..|.+.|+|+.|.+
T Consensus         3 KvVIRrLPP~Lt-eeeF~~~l~~~~~~d~~~f-v~G~~-s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D   72 (91)
T 1uw4_A            3 KVVIRRLPPTLT-KEQLQEHLQPMPEHDYFEF-FSNDT-SLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD   72 (91)
T ss_dssp             EEEEEEECTTCC-HHHHHHHHCSCCCEEEEEE-EESCC-SSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred             EEEEeCCCCCCC-HHHHHHHhcCcccceEEEE-eCCcc-CCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence            678999999854 7799999999988644431 23333 2235666889999999999999999999999887

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=95.25  E-value=0.012  Score=48.25  Aligned_cols=31  Identities=13%  Similarity=0.071  Sum_probs=26.6

Q ss_pred             cccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          239 ICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       239 ~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      .++|||||.|.+.+.|.++++.++|.....|
T Consensus        11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~   41 (158)
T 2kn4_A           11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG   41 (158)
T ss_dssp             SCEEEEEEECSSHHHHHHHHHHHHHHHTCCC
T ss_pred             cccchhHHHHHHHHhHHHHHHhhcccCCCCC
Confidence            4799999999999999999999998654433

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.48  E-value=0.14  Score=43.47  Aligned_cols=65  Identities=14%  Similarity=0.128  Sum_probs=47.6

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhcc-----CCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHH----
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKG-----VPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQL----  260 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~-----vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk----  260 (439)
                      -+.-+..|+|.|||...+ +.-|+..|..     =|+|.++.  .  .     |   +=|+|+|.+.+.|++++++    
T Consensus         4 ~~~~~~~I~V~~lPp~~~-~e~L~LYFEn~rrsGGG~V~~v~--~--~-----~---~~AvItF~d~~va~rVL~k~~H~   70 (104)
T 2dhx_A            4 GSSGGVAVEVRGLPPAVP-DELLTLYFENRRRSGGGPVLSWQ--R--L-----G---CGGVLTFREPADAERVLAQADHE   70 (104)
T ss_dssp             SCCCCCEEEEESCCTTSC-HHHHHHHHHCTTTTCCCCEEEEE--E--E-----T---TEEEEEESSHHHHHHHHTCSCCB
T ss_pred             CccCccEEEEECCCCCCC-hhHheEEEeCCCcCCCceeeEEE--E--c-----C---CcEEEEEcChHHHHHHhcCCcce
Confidence            356789999999999854 4457777843     34555554  1  1     1   5689999999999999998    


Q ss_pred             hCCceec
Q 013598          261 FSRQIIA  267 (439)
Q Consensus       261 ~NGq~~~  267 (439)
                      |+|..+.
T Consensus        71 L~~~~Ls   77 (104)
T 2dhx_A           71 LHGAQLS   77 (104)
T ss_dssp             SSSSBCE
T ss_pred             ecCeEEE
Confidence            7776554

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=94.29  E-value=0.0054  Score=46.39  Aligned_cols=44  Identities=14%  Similarity=0.148  Sum_probs=33.4

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLK  175 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~  175 (439)
                      .++||||++.|.+.+.+++++++|.+.. .|+.+.+..+.+.|.+
T Consensus        42 g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~~   86 (90)
T 3p5t_L           42 GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEHH   86 (90)
T ss_dssp             CCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC------
T ss_pred             CccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCccc
Confidence            3789999999999999999999999977 8888888877665543

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=93.91  E-value=0.016  Score=45.77  Aligned_cols=40  Identities=18%  Similarity=0.260  Sum_probs=34.2

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-----Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-----EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-----~araaNld~~~~  171 (439)
                      .++||||++.|.+.+.++++|+.|.+..     +||.+.++++++
T Consensus        50 g~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks   94 (95)
T 2lkz_A           50 QQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS   94 (95)
T ss_dssp             SSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred             CCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence            4899999999999999999999999852     678888877653

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=93.71  E-value=0.0062  Score=47.57  Aligned_cols=65  Identities=11%  Similarity=-0.033  Sum_probs=47.9

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR  210 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~k  210 (439)
                      .+++|||++.|.+...+++++++|.+.. .++.+.+.++.+....                        .|++.... ..
T Consensus        44 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~------------------------~~~~~~~~-~~   98 (115)
T 3lqv_A           44 PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF------------------------QKMDTKKK-EE   98 (115)
T ss_dssp             TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT------------------------TTSCHHHH-HH
T ss_pred             CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh------------------------hhhhHhHh-HH
Confidence            3679999999999999999999998876 6677666654332211                        45666432 66


Q ss_pred             HHHHHhccCCC
Q 013598          211 DLKSAFKGVPG  221 (439)
Q Consensus       211 DL~~aFk~vGg  221 (439)
                      +|+.+|+.+|-
T Consensus        99 ~l~~~~~~~g~  109 (115)
T 3lqv_A           99 QLKLLKEKYGI  109 (115)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhCC
Confidence            89999988875

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=93.41  E-value=0.018  Score=45.34  Aligned_cols=42  Identities=5%  Similarity=-0.050  Sum_probs=37.9

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      ++||||++.|.+.+.+++++++|.+.. .++.+.++++.++|.
T Consensus        61 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~~  103 (111)
T 2cpi_A           61 GPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYC  103 (111)
T ss_dssp             CCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred             CCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccccc
Confidence            688999999999999999999999987 889999998877764

>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}

Probab=93.33  E-value=0.19  Score=41.96  Aligned_cols=73  Identities=16%  Similarity=0.191  Sum_probs=56.2

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      -+..|-|.+||...+ +.++.+.+....++-... =+-++...+ +.+=.-||++|++.++...|.+.++|+.|.+
T Consensus         8 ~~~KvVIRrLPP~Lt-ee~F~~~l~~~~~~d~~~-fv~G~~s~~-~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D   80 (97)
T 2l08_A            8 HSHMVVIRRLPPGLT-KEQLEEQLRPLPAHDYFE-FFAADLSLY-PHLYSRAYINFRNPDDILLFRDRFDGYIFLD   80 (97)
T ss_dssp             CCCCEEEECCCSCSC-HHHHTTTTSCCSSEEECC-CCCCCSSSC-CSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred             cceeEEEeCCCCCCC-HHHHHHHhCCcCccceEE-EeCCccCCC-CCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence            356789999999865 778999998888863332 123333232 5556779999999999999999999999887

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=93.23  E-value=0.017  Score=44.35  Aligned_cols=42  Identities=14%  Similarity=0.154  Sum_probs=35.1

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhh-H-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQS-R-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~s-r-~araaNld~~~~~P  173 (439)
                      .++||||++.|.+.+.++++|+.|... . .+|.+.++++.++|
T Consensus        41 ~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~   84 (91)
T 2lxi_A           41 GQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKP   84 (91)
T ss_dssp             CCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCC
T ss_pred             CCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCC
Confidence            379999999999999999999988653 3 78899988776544

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.92  E-value=0.047  Score=41.62  Aligned_cols=42  Identities=14%  Similarity=0.190  Sum_probs=36.3

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      +++|||++.|.+.+.+++++++|.+.. .++.+.+.++...+.
T Consensus        47 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~   89 (97)
T 1x5p_A           47 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM   89 (97)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence            899999999999999999999999877 788888887665544

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=92.85  E-value=0.015  Score=42.85  Aligned_cols=42  Identities=12%  Similarity=0.194  Sum_probs=34.3

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.+|
T Consensus        45 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~kp   87 (87)
T 3bs9_A           45 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP   87 (87)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC---
T ss_pred             CccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCCC
Confidence            3689999999999999999999999876 77888887776655

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=92.42  E-value=0.036  Score=41.99  Aligned_cols=43  Identities=16%  Similarity=0.136  Sum_probs=36.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.++.
T Consensus        47 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~   90 (99)
T 1whw_A           47 KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE   90 (99)
T ss_dssp             CCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred             CCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence            4789999999999999999999999877 778888887666554

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=92.40  E-value=0.039  Score=42.04  Aligned_cols=41  Identities=15%  Similarity=0.117  Sum_probs=34.3

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .++||||++.|.+.+.++++|+ |.+.. .++.+.+..+++++
T Consensus        55 g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~   96 (101)
T 1fj7_A           55 GTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRD   96 (101)
T ss_dssp             ETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCC
T ss_pred             CCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCC
Confidence            3899999999999999999998 98876 77888877665543

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=92.02  E-value=0.052  Score=42.29  Aligned_cols=48  Identities=13%  Similarity=0.208  Sum_probs=40.0

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPK  179 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~  179 (439)
                      .+++|||++.|.+.+.++++|++|.+.. .++.+.+.+++..+..+.+.
T Consensus        54 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~  102 (115)
T 2dgo_A           54 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST  102 (115)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCCSCCC
T ss_pred             CCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCCCccc
Confidence            3679999999999999999999999877 88888888887766644433

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=92.00  E-value=0.03  Score=45.72  Aligned_cols=42  Identities=12%  Similarity=0.125  Sum_probs=35.7

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      ++||||++.|.+.+.++++++.|.+.+ .+|.+.+..++..|.
T Consensus        65 ~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p~  107 (111)
T 2jvr_A           65 DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPPP  107 (111)
T ss_dssp             SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC---
T ss_pred             CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence            689999999999999999999999988 889999887766543

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=91.96  E-value=0.025  Score=44.32  Aligned_cols=39  Identities=8%  Similarity=0.201  Sum_probs=34.5

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      .++||||++.|.+.+.+++++++|.+.. .++.+.+++++
T Consensus        58 g~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak   97 (99)
T 4fxv_A           58 GHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR   97 (99)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            4789999999999999999999999877 88888888654

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=91.94  E-value=0.034  Score=45.16  Aligned_cols=43  Identities=9%  Similarity=-0.050  Sum_probs=37.5

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .++||||++.|.+...+++++++|.+.. .++.+.+.++++...
T Consensus        89 g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~  132 (143)
T 3egn_A           89 GRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARP  132 (143)
T ss_dssp             TTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSCC
T ss_pred             CCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence            3899999999999999999999999977 888988887766443

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.91  E-value=0.052  Score=42.72  Aligned_cols=41  Identities=15%  Similarity=0.290  Sum_probs=35.4

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      +++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.++
T Consensus        67 ~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~  108 (109)
T 2err_A           67 GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV  108 (109)
T ss_dssp             BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCSC
T ss_pred             CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCc
Confidence            689999999999999999999999877 77888877766554

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.89  E-value=0.062  Score=40.88  Aligned_cols=43  Identities=14%  Similarity=0.125  Sum_probs=36.4

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.++++++.|.+.. .++.+.+.++++.+.
T Consensus        51 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~   94 (102)
T 2cqb_A           51 EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRI   94 (102)
T ss_dssp             CCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred             CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCC
Confidence            4789999999999999999999999877 788888887655443

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=91.82  E-value=0.029  Score=42.99  Aligned_cols=43  Identities=5%  Similarity=-0.088  Sum_probs=36.9

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+.++.++|.
T Consensus        62 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~  105 (106)
T 1p27_B           62 GYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP  105 (106)
T ss_dssp             SSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESSC
T ss_pred             CceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCCC
Confidence            4679999999999999999999999876 788888887776654

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.58  E-value=0.076  Score=40.38  Aligned_cols=42  Identities=10%  Similarity=0.186  Sum_probs=36.6

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      +++|||++.|.+.+.+++++++|.+.. .++.+.+.+++..+.
T Consensus        52 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~   94 (102)
T 1x5s_A           52 RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD   94 (102)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred             CcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence            689999999999999999999999877 788888887766554

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=91.52  E-value=0.031  Score=40.79  Aligned_cols=41  Identities=15%  Similarity=0.176  Sum_probs=34.3

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE  172 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~  172 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+..++++
T Consensus        40 ~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~   81 (83)
T 3md1_A           40 GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL   81 (83)
T ss_dssp             CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             CCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence            4779999999999999999999998877 7777777765543

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=91.44  E-value=0.03  Score=44.86  Aligned_cols=39  Identities=8%  Similarity=0.022  Sum_probs=34.4

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      .++||||++.|.+.+.+++++++|.+.. .+|.+.++++.
T Consensus        45 g~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~   84 (110)
T 3s8s_A           45 RKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI   84 (110)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred             CceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence            5899999999999999999999999977 88888877653

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.43  E-value=0.067  Score=41.53  Aligned_cols=43  Identities=9%  Similarity=0.095  Sum_probs=36.6

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.++++|++|.+.. .++.+.+..++.++.
T Consensus        62 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~  105 (113)
T 2cpe_A           62 GKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP  105 (113)
T ss_dssp             CSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred             CCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence            3789999999999999999999999877 788888887665444

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=91.37  E-value=0.036  Score=44.27  Aligned_cols=36  Identities=11%  Similarity=-0.018  Sum_probs=31.6

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINK  168 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~  168 (439)
                      ++||||++.|.+.+.+.+++++|.+.. .||.+.+++
T Consensus        66 ~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~  102 (104)
T 1jmt_A           66 HLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL  102 (104)
T ss_dssp             SSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEE
T ss_pred             CccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEE
Confidence            689999999999999999999999987 777776654

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=91.34  E-value=0.059  Score=40.47  Aligned_cols=41  Identities=5%  Similarity=0.000  Sum_probs=34.8

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      ++||||++.|.+.+.+++++++|.+.. .++.+.++.+..+.
T Consensus        38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~   79 (88)
T 1wg1_A           38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA   79 (88)
T ss_dssp             GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred             CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence            889999999999999999999999877 77877777654443

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.31  E-value=0.075  Score=40.60  Aligned_cols=42  Identities=14%  Similarity=0.306  Sum_probs=36.9

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      +++|||++.|.+.+.+++++++|.+.. .++.+.+.++..++.
T Consensus        53 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~   95 (103)
T 2cq3_A           53 GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM   95 (103)
T ss_dssp             TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred             CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCC
Confidence            579999999999999999999999877 888888887776655

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=91.27  E-value=0.054  Score=41.07  Aligned_cols=43  Identities=7%  Similarity=0.138  Sum_probs=36.6

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.++.
T Consensus        41 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~   84 (96)
T 2x1f_A           41 GRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI   84 (96)
T ss_dssp             CCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred             CccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence            3779999999999999999999999877 788888887766543

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.26  E-value=0.078  Score=39.70  Aligned_cols=43  Identities=12%  Similarity=0.271  Sum_probs=36.2

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.++.
T Consensus        44 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~   87 (95)
T 2dnz_A           44 GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD   87 (95)
T ss_dssp             CCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred             CceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence            4789999999999999999999999876 778888877665444

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=91.21  E-value=0.045  Score=44.00  Aligned_cols=38  Identities=3%  Similarity=-0.197  Sum_probs=33.8

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      ++||||++.|.+.+.+.+++++|.+.. .+|.+.+.++.
T Consensus        54 ~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~   92 (105)
T 2pe8_A           54 DEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYN   92 (105)
T ss_dssp             TTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence            679999999999999999999999988 88888776553

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.91  E-value=0.07  Score=40.62  Aligned_cols=41  Identities=12%  Similarity=0.097  Sum_probs=34.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE  172 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~  172 (439)
                      .+++|||++.|.+...+++++++|.+.. .++.+.+..++.+
T Consensus        53 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   94 (97)
T 2e5j_A           53 QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ   94 (97)
T ss_dssp             ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred             CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence            4899999999999999999999999877 7777777765544

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.89  E-value=0.067  Score=40.13  Aligned_cols=42  Identities=5%  Similarity=0.030  Sum_probs=35.4

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+.++...+
T Consensus        45 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   87 (96)
T 1x5t_A           45 GNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD   87 (96)
T ss_dssp             CSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred             CCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence            4789999999999999999999998876 77777777665544

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=90.85  E-value=0.13  Score=41.47  Aligned_cols=39  Identities=21%  Similarity=0.229  Sum_probs=34.5

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhh----H-Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQS----R-EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~s----r-~araaNld~~~~  171 (439)
                      .++||||++.|.+. .+.+++++|.+.    . .+|.+.+++++.
T Consensus        64 g~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~  107 (131)
T 2m2b_A           64 QLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKG  107 (131)
T ss_dssp             SSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred             CCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence            47999999999999 999999999997    6 889999887654

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=90.70  E-value=0.064  Score=41.32  Aligned_cols=39  Identities=13%  Similarity=0.243  Sum_probs=32.5

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      .+++|||++.|.+.+.+++++ +|.+.. .++.+.+..++.
T Consensus        58 g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~   97 (100)
T 2j76_E           58 ERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ   97 (100)
T ss_dssp             CCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred             CccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence            478999999999999999999 898876 777777765544

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.68  E-value=0.084  Score=40.35  Aligned_cols=42  Identities=12%  Similarity=0.165  Sum_probs=35.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++..+
T Consensus        52 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~   94 (103)
T 2dnm_A           52 KAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR   94 (103)
T ss_dssp             CSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred             CCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCC
Confidence            4789999999999999999999999877 78888887766543

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=90.57  E-value=0.062  Score=40.02  Aligned_cols=43  Identities=12%  Similarity=0.163  Sum_probs=35.3

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.++++++.|.+.. .++.+.+.+++..+.
T Consensus        45 g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~   88 (92)
T 2dgv_A           45 GKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG   88 (92)
T ss_dssp             SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred             CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence            3689999999999999999999999876 777777776655443

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.46  E-value=0.064  Score=40.86  Aligned_cols=43  Identities=9%  Similarity=0.061  Sum_probs=36.7

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.++.
T Consensus        50 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~   93 (101)
T 2fc9_A           50 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS   93 (101)
T ss_dssp             SCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred             CCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence            3789999999999999999999999877 788888887666543

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=90.44  E-value=0.075  Score=41.07  Aligned_cols=43  Identities=5%  Similarity=-0.084  Sum_probs=36.7

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+...+++++++|.+.. .++.+.+.++.+++.
T Consensus        65 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~  108 (110)
T 1oo0_B           65 GFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP  108 (110)
T ss_dssp             SSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESSC
T ss_pred             CCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCCC
Confidence            4789999999999999999999999877 788888887766554

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=90.40  E-value=0.56  Score=39.79  Aligned_cols=62  Identities=24%  Similarity=0.263  Sum_probs=47.8

Q ss_pred             CCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh
Q 013598          187 EPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF  261 (439)
Q Consensus       187 ~~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~  261 (439)
                      +++..+.--+|++-+.|++.. ..||..+|..+|+ +.|+  =+.|  |       -|||.|.+.+.|..++..+
T Consensus         8 g~d~~p~r~HVf~l~FP~ewK-t~DI~~lFs~fgg-v~I~--WidD--T-------sAlvvf~~~~~a~~al~~i   69 (100)
T 1whv_A            8 GPDLQPKRDHVLHVTFPKEWK-TSDLYQLFSAFGN-IQIS--WIDD--T-------SAFVSLSQPEQVQIAVNTS   69 (100)
T ss_dssp             CSCCCCCCCSEEEEECCTTCC-HHHHHHHHTTTCS-CCCE--EEET--T-------EEEEECSCHHHHHHHHHHH
T ss_pred             CCCCCCCCCeEEEEeCChhhh-hHHHHHHhhccCC-EEEE--EEcC--C-------eEEEEecCHHHHHHHHHhc
Confidence            445566566666669999854 8899999999995 5665  4444  5       5999999999999988854

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.35  E-value=0.17  Score=39.18  Aligned_cols=44  Identities=5%  Similarity=0.020  Sum_probs=37.2

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKP  176 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~  176 (439)
                      +.+|||++.|.+.+.++++++.|.+.. .++.+.+.+++.+|...
T Consensus        59 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~  103 (109)
T 1x4g_A           59 PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMT  103 (109)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSSC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCCC
Confidence            459999999999999999999999877 78888888777766533

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=90.33  E-value=0.29  Score=37.56  Aligned_cols=44  Identities=14%  Similarity=0.033  Sum_probs=37.2

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKP  176 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~  176 (439)
                      -+||||++.|.+.+.++++++.|.+.. .++.+.+.+++..+...
T Consensus        43 ~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~   87 (103)
T 2dgu_A           43 KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR   87 (103)
T ss_dssp             ECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred             EECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccc
Confidence            468999999999999999999999877 78888888777655533

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.32  E-value=0.084  Score=40.96  Aligned_cols=44  Identities=14%  Similarity=0.034  Sum_probs=36.9

Q ss_pred             hcCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       131 ~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      ..+++|||++.|.+.+.++++++.|.+.. .++.+.+.+++..+.
T Consensus        63 ~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~  107 (115)
T 2cpx_A           63 TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ  107 (115)
T ss_dssp             CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred             CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence            45899999999999999999999998876 778888877665443

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.23  E-value=0.087  Score=40.27  Aligned_cols=40  Identities=0%  Similarity=-0.157  Sum_probs=35.6

Q ss_pred             CCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          135 RGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       135 rGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      ||||++.|.+.+.+++++++|.+.. .++.+.+..++.++.
T Consensus        52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~   92 (96)
T 2dgx_A           52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASG   92 (96)
T ss_dssp             TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred             CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence            9999999999999999999999977 888888887766554

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=90.22  E-value=0.036  Score=41.33  Aligned_cols=42  Identities=14%  Similarity=0.325  Sum_probs=32.6

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+ +.+++++|.+.. .++.+.+..+...+.
T Consensus        40 ~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~   82 (90)
T 2ki2_A           40 KKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS   82 (90)
T ss_dssp             CCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred             CCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence            478999999999999 999999998877 788888877666544

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=90.22  E-value=0.12  Score=39.43  Aligned_cols=43  Identities=14%  Similarity=0.199  Sum_probs=35.2

Q ss_pred             cCCCCccccccccchHHHHHHHHH-HhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEI-QQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM-~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.++++++.| .+.. .++.+.+.+++.++.
T Consensus        55 ~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~   99 (107)
T 2cph_A           55 GAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVT   99 (107)
T ss_dssp             CSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred             CCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCC
Confidence            478999999999999999999999 5655 777888777665544

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=89.64  E-value=0.055  Score=42.48  Aligned_cols=43  Identities=7%  Similarity=-0.011  Sum_probs=37.2

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+..++.++.
T Consensus        54 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~   97 (116)
T 2lcw_A           54 GKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD   97 (116)
Confidence            3789999999999999999999999977 888888887766554

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=90.11  E-value=0.077  Score=43.69  Aligned_cols=39  Identities=10%  Similarity=0.039  Sum_probs=34.1

Q ss_pred             hcCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccc
Q 013598          131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKL  169 (439)
Q Consensus       131 ~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~  169 (439)
                      ++.+||||+++|.+.+.+.+++++|.+.+ .||.+.+.++
T Consensus        51 ~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~   90 (114)
T 3s6e_A           51 KNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV   90 (114)
T ss_dssp             TTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             cCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEE
Confidence            34579999999999999999999999988 8888876655

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=90.09  E-value=0.1  Score=41.69  Aligned_cols=43  Identities=9%  Similarity=0.193  Sum_probs=36.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+..++..+.
T Consensus        45 g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~   88 (116)
T 2fy1_A           45 SKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF   88 (116)
T ss_dssp             TTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred             CCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence            4789999999999999999999998877 788888887765544

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.07  E-value=0.11  Score=39.30  Aligned_cols=42  Identities=19%  Similarity=0.289  Sum_probs=33.7

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .++||||++.|.+.+.++++|+ |.+.. .++.+.+.++.+.+.
T Consensus        49 ~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~   91 (99)
T 2dgs_A           49 QRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDS   91 (99)
T ss_dssp             CSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCC
T ss_pred             CCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCcc
Confidence            4689999999999999999998 87765 777777776655443

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.00  E-value=0.11  Score=38.25  Aligned_cols=34  Identities=32%  Similarity=0.411  Sum_probs=28.5

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhh
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMAN  165 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaN  165 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .+|.+-
T Consensus        44 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~   78 (85)
T 1x4e_A           44 NKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK   78 (85)
T ss_dssp             CSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred             CCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEe
Confidence            4789999999999999999999998866 554443

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=89.96  E-value=0.073  Score=44.27  Aligned_cols=42  Identities=10%  Similarity=-0.022  Sum_probs=36.3

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .++||||++.|.+.+.+++++++|.+.. .++.+.+++++.++
T Consensus        69 ~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~  111 (127)
T 2a3j_A           69 DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQ  111 (127)
T ss_dssp             CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred             CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence            3789999999999999999999999977 88888888766543

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=89.95  E-value=0.1  Score=40.15  Aligned_cols=41  Identities=7%  Similarity=0.109  Sum_probs=33.6

Q ss_pred             CCCCccccccccchHHHHHHHHHH------hhH-HhhhhhccccccCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQ------QSR-EAQMANINKLENEL  173 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~------~sr-~araaNld~~~~~P  173 (439)
                      +++|||++.|.+.+.++++|+.|.      +.. .++.+.+.++.+++
T Consensus        55 ~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~  102 (111)
T 1x4h_A           55 HSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD  102 (111)
T ss_dssp             CBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred             CCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCc
Confidence            789999999999999999999997      544 77777777665543

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.86  E-value=0.072  Score=40.52  Aligned_cols=42  Identities=7%  Similarity=0.141  Sum_probs=35.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .+++|||++.|.+.+.++++|++|.+.. .++.+.+.++++++
T Consensus        51 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~   93 (102)
T 2fc8_A           51 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG   93 (102)
T ss_dssp             CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred             CCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCC
Confidence            3789999999999999999999999977 78888887765543

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.67  E-value=0.087  Score=40.27  Aligned_cols=42  Identities=12%  Similarity=0.164  Sum_probs=34.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .+++|||++.|.+.+.++++++.|.+.. .++.+.+.+++..+
T Consensus        54 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   96 (105)
T 1x5u_A           54 GQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN   96 (105)
T ss_dssp             CSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred             CcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence            4789999999999999999999998866 77777777655443

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=89.57  E-value=0.052  Score=42.10  Aligned_cols=39  Identities=13%  Similarity=0.188  Sum_probs=33.1

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hh-hhhhccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EA-QMANINKLE  170 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~a-raaNld~~~  170 (439)
                      .++||||++.|.+...+++++++|.+.. .+ +.+.+.++.
T Consensus        51 g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~   91 (100)
T 3ns6_A           51 GKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMK   91 (100)
T ss_dssp             TEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESH
T ss_pred             CccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECc
Confidence            4789999999999999999999999877 66 777766554

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=89.44  E-value=0.084  Score=41.24  Aligned_cols=43  Identities=9%  Similarity=0.032  Sum_probs=36.1

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .++||||++.|.+.+.++++|++|.+.. .++.+.+.+++.++.
T Consensus        64 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~  107 (115)
T 2cpz_A           64 NLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND  107 (115)
T ss_dssp             CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred             CCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCc
Confidence            3688999999999999999999999877 788888887665443

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.41  E-value=0.1  Score=39.14  Aligned_cols=42  Identities=7%  Similarity=0.113  Sum_probs=35.5

Q ss_pred             CCCCccccccccchHHHHHHHHHHh-hH-HhhhhhccccccCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQ-SR-EAQMANINKLENELL  174 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~-sr-~araaNld~~~~~P~  174 (439)
                      +++|||++.|.+.+.+++++++|.+ .. .++.+.+.+++.++.
T Consensus        42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~   85 (93)
T 2cqh_A           42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL   85 (93)
T ss_dssp             EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred             cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence            4799999999999999999999998 66 888888887665443

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.33  E-value=0.13  Score=39.23  Aligned_cols=41  Identities=7%  Similarity=0.046  Sum_probs=34.9

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .+||||++.|.+.+.+++++++|.+.. .++.+.+.+++..+
T Consensus        53 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   94 (103)
T 2cqi_A           53 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS   94 (103)
T ss_dssp             SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred             CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCc
Confidence            578999999999999999999999877 77888887665543

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.30  E-value=0.067  Score=40.88  Aligned_cols=43  Identities=7%  Similarity=0.057  Sum_probs=36.3

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.++.
T Consensus        54 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~   97 (103)
T 2cq0_A           54 GQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN   97 (103)
T ss_dssp             CSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred             CceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence            3789999999999999999999999877 788888887665443

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=89.21  E-value=0.81  Score=38.75  Aligned_cols=73  Identities=8%  Similarity=-0.025  Sum_probs=60.1

Q ss_pred             ccEEEEcCCCCCCch----H-HHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          194 GIRVRLLNLPKKKNI----H-RDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       194 gvRVrVGNLPkk~ni----~-kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      -.+|.|+||+.+. +    . ..++++|..++.++++-+=.+-.|          .-|+|.+.++|.++=-++.|..|++
T Consensus         5 pntLiitnl~~~v-F~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRR----------irv~F~~~~~A~~AR~~Lh~~~f~g   73 (104)
T 1wey_A            5 SSGLIACVANDDV-FSESETRAKFESLFRTYDKDTTFQYFKSFKR----------VRINFSNPLSAADARLRLHKTEFLG   73 (104)
T ss_dssp             CCEEEEECCCGGG-GSTTTHHHHHHHHHHTTCSSCEEEEETTTTE----------EEEECSSTTHHHHHHHTSTTSEETT
T ss_pred             CceEEEecCCHHH-cCCHHHHHHHHHHHHhhCcCcceeecCcceE----------EEEEeCChHHHHHHHHHhccceecC
Confidence            3579999998863 2    2 367999999999999987777665          4799999999999999999999873


Q ss_pred             ceeeceeeeeeec
Q 013598          269 GKVQKQIRCEMVN  281 (439)
Q Consensus       269 gKVEK~ikcE~~~  281 (439)
                          +.++|-.+.
T Consensus        74 ----~~~r~YFgq   82 (104)
T 1wey_A           74 ----KEMKLYFAQ   82 (104)
T ss_dssp             ----EECEEECCC
T ss_pred             ----ceeEEEecC
Confidence                368888877

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=89.10  E-value=0.059  Score=40.74  Aligned_cols=42  Identities=17%  Similarity=0.185  Sum_probs=35.2

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      +++|||++.|.+.+.+++++++|.+.. .++.+.+..++.++.
T Consensus        48 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~   90 (98)
T 2cpf_A           48 LSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATK   90 (98)
T ss_dssp             EEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred             CcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence            678999999999999999999998876 778888776655443

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=88.99  E-value=0.044  Score=41.78  Aligned_cols=41  Identities=12%  Similarity=0.173  Sum_probs=35.1

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      ++||||++.|.+.+.+++++++|.+.. .++.+.+.+++..+
T Consensus        49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~   90 (99)
T 2cpj_A           49 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA   90 (99)
T ss_dssp             TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred             cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence            679999999999999999999999877 77888877765544

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=88.93  E-value=0.13  Score=40.65  Aligned_cols=45  Identities=4%  Similarity=-0.093  Sum_probs=39.0

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKP  176 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~  176 (439)
                      .+++|||++.|.+...++++++.|.+.. .++.+.+.++.+.+.+.
T Consensus        61 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~  106 (126)
T 3ex7_B           61 GYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPK  106 (126)
T ss_dssp             SSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSCC
T ss_pred             CccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCCC
Confidence            4779999999999999999999999977 88899999887766543

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.88  E-value=0.072  Score=40.50  Aligned_cols=42  Identities=10%  Similarity=0.177  Sum_probs=34.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+.++++.+
T Consensus        55 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   97 (100)
T 2do4_A           55 GKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP   97 (100)
T ss_dssp             SCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred             CCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence            4789999999999999999999999866 77777777655443

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=88.83  E-value=0.098  Score=43.07  Aligned_cols=43  Identities=9%  Similarity=0.152  Sum_probs=36.4

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .++||||++.|.+.+.++++|++|.+.. .++.+.+.+++..+.
T Consensus        86 g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~  129 (135)
T 2lea_A           86 KESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP  129 (135)
T ss_dssp             SSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred             CccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence            3799999999999999999999998877 778888887665444

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.68  E-value=0.12  Score=39.63  Aligned_cols=42  Identities=12%  Similarity=0.181  Sum_probs=35.1

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.++++| +|.+.. .++.+.+.++...+.
T Consensus        54 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~   96 (104)
T 1wi8_A           54 ERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQD   96 (104)
T ss_dssp             TSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCC
T ss_pred             CCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCC
Confidence            578999999999999999999 898877 778888886655443

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=88.53  E-value=0.17  Score=40.17  Aligned_cols=43  Identities=7%  Similarity=0.095  Sum_probs=36.7

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+.++...+.
T Consensus        73 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~  116 (124)
T 2kt5_A           73 GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID  116 (124)
T ss_dssp             SSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred             CCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence            3689999999999999999999999877 788888887766444

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=88.45  E-value=0.2  Score=38.29  Aligned_cols=40  Identities=5%  Similarity=0.049  Sum_probs=32.5

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH----Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR----EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr----~araaNld~~~~  171 (439)
                      .++||||++.|.+.+.++++++.|.+..    .++.+.+.++..
T Consensus        52 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~   95 (106)
T 2dgp_A           52 GMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS   95 (106)
T ss_dssp             CSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred             CCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence            4789999999999999999999998855    456666665544

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.44  E-value=0.045  Score=41.00  Aligned_cols=41  Identities=5%  Similarity=0.024  Sum_probs=34.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .+++|||++.|.+.+.++++|+ |.+.. .+|.+.+..++.+|
T Consensus        47 g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~   88 (91)
T 2dgw_A           47 GNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGP   88 (91)
T ss_dssp             SCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred             CCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence            3789999999999999999999 88876 78888887766554

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.42  E-value=0.17  Score=39.09  Aligned_cols=40  Identities=5%  Similarity=-0.090  Sum_probs=34.4

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE  172 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~  172 (439)
                      +++|||++.|.+.+.+++++++|.+.. .++.+.+.+++..
T Consensus        59 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   99 (109)
T 1x4a_A           59 GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG   99 (109)
T ss_dssp             SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence            589999999999999999999999876 7788887766553

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=88.39  E-value=0.15  Score=41.83  Aligned_cols=40  Identities=8%  Similarity=0.075  Sum_probs=34.1

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE  172 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~  172 (439)
                      +++|||++.|.+.+.++++|++|.+.. .++.+.+.++..+
T Consensus        86 ~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~  126 (129)
T 2kxn_B           86 RSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK  126 (129)
T ss_dssp             CCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred             ccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            789999999999999999999999866 7777777765543

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=88.38  E-value=0.11  Score=41.49  Aligned_cols=37  Identities=8%  Similarity=-0.117  Sum_probs=32.4

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKL  169 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~  169 (439)
                      +++|||++.|.+.+.+.+++++|.+.. .+|.+.+.+.
T Consensus        57 ~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~   94 (105)
T 3v4m_A           57 PGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYC   94 (105)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             CCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEe
Confidence            579999999999999999999999987 7787776654

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=88.34  E-value=0.083  Score=39.55  Aligned_cols=39  Identities=15%  Similarity=0.139  Sum_probs=32.6

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++
T Consensus        54 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   93 (95)
T 2ywk_A           54 GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS   93 (95)
T ss_dssp             SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence            4679999999999999999999998876 66777666544

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=88.27  E-value=0.062  Score=40.45  Aligned_cols=42  Identities=14%  Similarity=0.137  Sum_probs=35.2

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.++
T Consensus        50 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   92 (96)
T 1fjc_A           50 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG   92 (96)
T ss_dssp             TEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred             CCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence            4789999999999999999999999866 77887777655443

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.21  E-value=0.11  Score=39.68  Aligned_cols=42  Identities=12%  Similarity=0.135  Sum_probs=35.7

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .+++|||++.|.+...+++++++|.+.. .++.+.+.+++..+
T Consensus        52 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~   94 (103)
T 2d9p_A           52 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE   94 (103)
T ss_dssp             SSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCC
T ss_pred             CCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccc
Confidence            3789999999999999999999999877 77888877665544

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=88.08  E-value=0.1  Score=39.93  Aligned_cols=43  Identities=7%  Similarity=0.058  Sum_probs=35.1

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hh---hhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EA---QMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~a---raaNld~~~~~P~  174 (439)
                      .+++|||++.|.+...+++++++|.+.. .+   +.+.+.++...+.
T Consensus        53 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~   99 (105)
T 2dnh_A           53 GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE   99 (105)
T ss_dssp             SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred             CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence            3679999999999999999999999876 55   7777776665544

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=88.07  E-value=1.1  Score=38.99  Aligned_cols=72  Identities=17%  Similarity=0.253  Sum_probs=58.4

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccC-----CCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGV-----PGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~v-----GgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .-+|-|=|||-+.| ..-+++++.+.     |.++.|.  ...+        -|=|+|-|.+...|.++-=.+||.+|. 
T Consensus        21 ~rtiaL~~ipDtvn-darIr~lve~~~~i~~g~i~KI~--L~pD--------H~GAivef~d~~~AgKasLaL~G~ef~-   88 (117)
T 2l9w_A           21 ETLICLFPLSDKVS-PSLICQFLQEEIHINEKDIRKIL--LVSD--------FNGAIIIFRDSKFAAKMLMILNGSQFQ-   88 (117)
T ss_dssp             TSCEEEECCCTTCC-HHHHHHHHHHHTCCCTTTCSEEE--EETT--------TTEEEEECSCHHHHHHHHHHHSSEEET-
T ss_pred             CcEEEEecCCCCCC-HHHHHHHHhhhhccCccceeEEE--EecC--------CCceEEEEccchhhHHHHhhcCCeeec-
Confidence            34677889999977 66688888888     9999997  4444        466999999999999999999999988 


Q ss_pred             ceeeceeeeeee
Q 013598          269 GKVQKQIRCEMV  280 (439)
Q Consensus       269 gKVEK~ikcE~~  280 (439)
                      |   +.|+|.-+
T Consensus        89 g---r~Lr~gTv   97 (117)
T 2l9w_A           89 G---KVIRSGTI   97 (117)
T ss_dssp             T---EEEEEECH
T ss_pred             C---eEEEecCH
Confidence            3   56777654

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=88.01  E-value=0.15  Score=38.78  Aligned_cols=38  Identities=5%  Similarity=-0.125  Sum_probs=31.9

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      +++|||++.|.+.+.++++++.|.+.. .++.+.+..++
T Consensus        61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~   99 (101)
T 2la4_A           61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK   99 (101)
T ss_dssp             TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred             cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence            789999999999999999999998866 66666666544

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=87.94  E-value=0.077  Score=39.72  Aligned_cols=38  Identities=5%  Similarity=0.047  Sum_probs=32.6

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      +++|||++.|.+.+.+++++++|.+.. .+|.+.+.+++
T Consensus        55 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~   93 (95)
T 2ek1_A           55 MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS   93 (95)
T ss_dssp             CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             CEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence            789999999999999999999998876 77777766554

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=87.93  E-value=0.071  Score=40.26  Aligned_cols=39  Identities=5%  Similarity=-0.003  Sum_probs=33.7

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      +++|||++.|.+.+.+++++++|.+.. .++.+.+.++..
T Consensus        55 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~   94 (98)
T 2cqp_A           55 MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG   94 (98)
T ss_dssp             CEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred             CeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence            689999999999999999999999876 778887776553

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=87.76  E-value=0.18  Score=38.34  Aligned_cols=41  Identities=5%  Similarity=-0.007  Sum_probs=35.1

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .+||||++.|.+...+++++++|.+.. .++.+.+.++++++
T Consensus        49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   90 (99)
T 2cpd_A           49 KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD   90 (99)
T ss_dssp             ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred             EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence            469999999999999999999999977 78888888766544

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=87.58  E-value=0.13  Score=37.72  Aligned_cols=37  Identities=11%  Similarity=0.225  Sum_probs=32.4

Q ss_pred             CCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       134 PrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      ++|||++.|.+.+.+++++++|.+.. .++.+.+..+.
T Consensus        46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   83 (88)
T 4a8x_A           46 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL   83 (88)
T ss_dssp             ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             CCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence            89999999999999999999999877 77777776553

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=87.47  E-value=0.12  Score=40.87  Aligned_cols=40  Identities=13%  Similarity=0.187  Sum_probs=34.7

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      +.+||||++.|.+...+++++++|.+.. .+|.+.++++..
T Consensus        61 ~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~  101 (112)
T 2dit_A           61 RHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDG  101 (112)
T ss_dssp             TCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCS
T ss_pred             CCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence            4689999999999999999999999877 888888886544

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=87.44  E-value=0.1  Score=38.10  Aligned_cols=37  Identities=16%  Similarity=0.166  Sum_probs=30.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINK  168 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~  168 (439)
                      .+++|||++.|.+.+.++++++.|.+.. .++.+.+..
T Consensus        46 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~   83 (85)
T 3mdf_A           46 EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL   83 (85)
T ss_dssp             TEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence            4789999999999999999999998866 666655543

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=87.40  E-value=0.072  Score=40.84  Aligned_cols=42  Identities=12%  Similarity=0.084  Sum_probs=34.9

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.++++| +|.+.. .++.+.+.++...+.
T Consensus        53 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~   95 (103)
T 2dng_A           53 DKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQ   95 (103)
T ss_dssp             CSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCC
T ss_pred             CccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCC
Confidence            378999999999999999999 898876 788888887665443

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.37  E-value=0.12  Score=39.42  Aligned_cols=42  Identities=17%  Similarity=0.177  Sum_probs=33.4

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH--HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR--EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr--~araaNld~~~~~P  173 (439)
                      .+++|||++.|.+.+.++++|++|.+..  .++.+.+.++..++
T Consensus        48 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~   91 (104)
T 2dhg_A           48 GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA   91 (104)
T ss_dssp             CCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCC
T ss_pred             CCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCC
Confidence            3689999999999999999999998754  66666666554443

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=87.23  E-value=0.093  Score=39.94  Aligned_cols=37  Identities=8%  Similarity=0.039  Sum_probs=30.2

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINK  168 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~  168 (439)
                      .+++|||++.|.+.+.++++++.|.+.. .++.+.+.+
T Consensus        60 g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~   97 (99)
T 2la6_A           60 GKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSF   97 (99)
T ss_dssp             CSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred             CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEe
Confidence            3789999999999999999999998866 555555443

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=87.15  E-value=0.11  Score=39.12  Aligned_cols=42  Identities=17%  Similarity=0.034  Sum_probs=35.1

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .+++|||++.|.+...+++++++|.+.. .++.+.+.++++.+
T Consensus        48 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   90 (97)
T 1nu4_A           48 LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS   90 (97)
T ss_dssp             HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred             CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence            3789999999999999999999999876 77777777665543

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=87.12  E-value=0.18  Score=38.69  Aligned_cols=43  Identities=14%  Similarity=0.083  Sum_probs=36.1

Q ss_pred             CCCCccccccccchHHHHHHHHHH--hhH-HhhhhhccccccCCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQ--QSR-EAQMANINKLENELLK  175 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~--~sr-~araaNld~~~~~P~~  175 (439)
                      ++||||++.|.+.+.++++++.|.  +.. .++.+.++++++++.+
T Consensus        50 ~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~   95 (109)
T 2dis_A           50 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV   95 (109)
T ss_dssp             TTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred             CcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCc
Confidence            799999999999999999999995  334 8888888887766553

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.12  E-value=0.12  Score=38.49  Aligned_cols=37  Identities=11%  Similarity=0.110  Sum_probs=30.3

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINK  168 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~  168 (439)
                      .+++|||++.|.+.+.++++++.|.+.. .++.+.+.+
T Consensus        55 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~   92 (94)
T 2e5h_A           55 RKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI   92 (94)
T ss_dssp             CCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred             CCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence            4789999999999999999999998765 566555544

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=87.10  E-value=0.16  Score=38.61  Aligned_cols=41  Identities=7%  Similarity=-0.051  Sum_probs=35.8

Q ss_pred             CCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       134 PrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      +||||++.|.+.+.+++++++|.+.. .++.+.+..+++++.
T Consensus        44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~   85 (96)
T 2kvi_A           44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR   85 (96)
T ss_dssp             ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred             eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence            48999999999999999999999877 788888888776554

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=86.99  E-value=0.11  Score=40.96  Aligned_cols=43  Identities=19%  Similarity=0.224  Sum_probs=34.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhHHhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~  174 (439)
                      .++||||++.|.+.+.++++++.|+..-.++.+.+..+..++.
T Consensus        64 g~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~~~  106 (109)
T 2rs2_A           64 KRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRA  106 (109)
T ss_dssp             CCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCCCC
T ss_pred             CCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCCCC
Confidence            4789999999999999999999886333778888887665554

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=86.71  E-value=0.097  Score=41.31  Aligned_cols=39  Identities=13%  Similarity=0.307  Sum_probs=33.0

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      +++|||++.|.+.+.++++++.|.+.. .++.+.+.+++.
T Consensus        66 ~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~  105 (108)
T 2jrs_A           66 RSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE  105 (108)
T ss_dssp             EEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred             ccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence            789999999999999999999999876 777777665543

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=86.52  E-value=0.11  Score=38.81  Aligned_cols=39  Identities=8%  Similarity=0.095  Sum_probs=32.3

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      .+++|||++.|.+...++++++.|.+.. .++.+.+.+++
T Consensus        54 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   93 (95)
T 2cqc_A           54 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS   93 (95)
T ss_dssp             SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred             CCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence            3789999999999999999999998866 66666666544

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.48  E-value=0.089  Score=39.79  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=31.9

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-Hhhh----hhcccccc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQM----ANINKLEN  171 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~ara----aNld~~~~  171 (439)
                      +++|||++.|.+.+.++++++.|.+.. .++.    +.+++++.
T Consensus        50 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~   93 (99)
T 2div_A           50 IPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATY   93 (99)
T ss_dssp             CEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTC
T ss_pred             CcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCC
Confidence            688999999999999999999998866 6666    56665443

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=86.36  E-value=0.4  Score=36.27  Aligned_cols=42  Identities=5%  Similarity=-0.059  Sum_probs=34.7

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-H--hhhhhccccccCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-E--AQMANINKLENELL  174 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~--araaNld~~~~~P~  174 (439)
                      +.|||+++.|.+.+.++++++.|.+.. .  ++.+.+.+++++|.
T Consensus        51 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~   95 (97)
T 1why_A           51 KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPS   95 (97)
T ss_dssp             SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCCC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCCC
Confidence            458999999999999999999999876 5  67787777666543

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=86.30  E-value=0.3  Score=38.64  Aligned_cols=45  Identities=4%  Similarity=-0.077  Sum_probs=39.3

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPS  177 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n  177 (439)
                      ++||||++.|.+...+++++++|.+.. .++.+.+.++..+....+
T Consensus        44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~   89 (111)
T 1whx_A           44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAA   89 (111)
T ss_dssp             SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTTCCC
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCccCCC
Confidence            689999999999999999999999977 889999998887666443

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=85.34  E-value=0.24  Score=38.24  Aligned_cols=39  Identities=8%  Similarity=0.005  Sum_probs=32.8

Q ss_pred             CCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccC
Q 013598          134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE  172 (439)
Q Consensus       134 PrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~  172 (439)
                      +||||++.|.+.+.+++++++|.+.. .++.+.+.+++.+
T Consensus        56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   95 (97)
T 2xnq_A           56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN   95 (97)
T ss_dssp             CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred             eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence            48999999999999999999998876 6777777765543

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=85.32  E-value=0.2  Score=40.91  Aligned_cols=38  Identities=13%  Similarity=0.143  Sum_probs=32.5

Q ss_pred             CCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       134 PrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      +||||++.|.+.+.+++++++|.+.. .++.+.+.++++
T Consensus       109 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  147 (150)
T 2i2y_A          109 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG  147 (150)
T ss_dssp             SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred             CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence            79999999999999999999998876 777777765544

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=85.07  E-value=0.16  Score=37.40  Aligned_cols=39  Identities=15%  Similarity=0.223  Sum_probs=32.2

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      .+++|||++.|.+.+.+++++ +|.+.. .++.+.+..+++
T Consensus        45 ~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~   84 (89)
T 3ucg_A           45 GHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT   84 (89)
T ss_dssp             SSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred             CCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence            378999999999999999999 888876 777777765543

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=85.07  E-value=0.094  Score=38.65  Aligned_cols=27  Identities=7%  Similarity=0.037  Sum_probs=24.5

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR  159 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr  159 (439)
                      ++||||++.|.+.+.+++++++|.+..
T Consensus        45 ~~~g~afV~f~~~~~A~~Ai~~lng~~   71 (81)
T 2krb_A           45 KTKGYIFLEYASPAHAVDAVKNADGYK   71 (81)
T ss_dssp             BCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred             cEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence            889999999999999999998887755

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=84.97  E-value=0.16  Score=39.75  Aligned_cols=43  Identities=19%  Similarity=0.219  Sum_probs=35.6

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhHHhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~  174 (439)
                      .+++||+++.|.+.+.++++|+.|.+.-.++.+.+.++...+.
T Consensus        56 ~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~   98 (116)
T 2cqd_A           56 GKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK   98 (116)
T ss_dssp             CCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTTCC
T ss_pred             CccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcccCCC
Confidence            3689999999999999999999998733788888887765443

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=84.79  E-value=0.13  Score=41.24  Aligned_cols=42  Identities=12%  Similarity=0.117  Sum_probs=35.6

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      ++||||++.|.+.+.+++++++|.+.. .++.+.+.+++..+.
T Consensus        82 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~  124 (139)
T 1u6f_A           82 QSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQ  124 (139)
T ss_dssp             EEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred             CcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence            679999999999999999999998877 778888887665544

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=84.62  E-value=0.15  Score=39.06  Aligned_cols=39  Identities=10%  Similarity=0.101  Sum_probs=32.6

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      .+++|||++.|.+...+++++++|.+.. .++.+.+.+++
T Consensus        67 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~  106 (107)
T 3ulh_A           67 GRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT  106 (107)
T ss_dssp             SCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence            3789999999999999999999998876 66776666543

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.54  E-value=0.24  Score=38.34  Aligned_cols=40  Identities=13%  Similarity=0.084  Sum_probs=34.4

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.
T Consensus        53 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   93 (114)
T 2do0_A           53 GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER   93 (114)
T ss_dssp             CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence            3679999999999999999999999877 788888877654

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=84.47  E-value=0.15  Score=39.64  Aligned_cols=38  Identities=11%  Similarity=0.111  Sum_probs=31.9

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhh-hhhcccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQ-MANINKL  169 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~ar-aaNld~~  169 (439)
                      .++||||++.|.+...+++++++|.+.. .++ .+.+..+
T Consensus        58 g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a   97 (105)
T 2nlw_A           58 GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLF   97 (105)
T ss_dssp             TBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECS
T ss_pred             CCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEc
Confidence            3889999999999999999999998866 666 6666644

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=84.44  E-value=0.11  Score=44.19  Aligned_cols=40  Identities=15%  Similarity=0.262  Sum_probs=34.0

Q ss_pred             hcCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       131 ~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      ..++||||++.|.+.+.++++|+.|.+.. .++.+.+..+.
T Consensus        95 tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~  135 (156)
T 3n9u_C           95 NGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPAT  135 (156)
T ss_dssp             TCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred             CCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcC
Confidence            34889999999999999999999998876 77877777554

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=83.90  E-value=0.17  Score=39.47  Aligned_cols=41  Identities=7%  Similarity=0.057  Sum_probs=34.2

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .+++|||++.|.+.+.++++| +|.+.. .++.+.+.+++.++
T Consensus        64 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~  105 (114)
T 2cq4_A           64 RRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEK  105 (114)
T ss_dssp             SSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHHH
T ss_pred             CccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCCc
Confidence            478999999999999999999 998866 77777777665543

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=83.85  E-value=0.18  Score=36.21  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=26.9

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANI  166 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNl  166 (439)
                      .+++|||++.|.+.+.++++++.|. .. .++.+.+
T Consensus        39 ~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v   73 (77)
T 1uaw_A           39 KRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDP   73 (77)
T ss_dssp             SSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEE
T ss_pred             CCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEE
Confidence            3789999999999999999998877 33 5544443

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=83.82  E-value=0.19  Score=39.55  Aligned_cols=41  Identities=7%  Similarity=0.233  Sum_probs=34.5

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .+++|||++.|.+.+.++++| +|.+.. .++.+.+..++.++
T Consensus        75 ~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~  116 (124)
T 2jwn_A           75 GHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNM  116 (124)
T ss_dssp             SSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCC
T ss_pred             CCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCC
Confidence            378999999999999999999 888877 78888888766543

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=83.80  E-value=0.11  Score=39.51  Aligned_cols=39  Identities=13%  Similarity=0.325  Sum_probs=32.2

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      +++|||++.|.+.+.++++++.|.+.. .++.+.+..+..
T Consensus        48 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   87 (104)
T 1p1t_A           48 KPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS   87 (104)
T ss_dssp             EEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred             ccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence            679999999999999999999998866 667776665443

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=83.66  E-value=0.2  Score=39.14  Aligned_cols=37  Identities=5%  Similarity=0.082  Sum_probs=30.0

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINK  168 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~  168 (439)
                      .++||||++.|.+.+.+++++++|.+.. .++.+.+.+
T Consensus        79 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~  116 (118)
T 2khc_A           79 SLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL  116 (118)
T ss_dssp             SCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred             CCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence            3789999999999999999999987765 555555443

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.54  E-value=0.47  Score=35.41  Aligned_cols=42  Identities=2%  Similarity=0.015  Sum_probs=34.8

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      -.+|||++.|.+.+.+++++++|.+.. .++.+.+.+++..+.
T Consensus        41 ~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~   83 (90)
T 2dnp_A           41 VVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK   83 (90)
T ss_dssp             ECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred             EECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence            358899999999999999999999877 778888877665443

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.50  E-value=0.4  Score=35.77  Aligned_cols=40  Identities=10%  Similarity=0.260  Sum_probs=33.2

Q ss_pred             CCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          135 RGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       135 rGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      ||||++.|.+.+.++++++.|.+.. .++.+.+..+++.+.
T Consensus        42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~   82 (90)
T 2dnq_A           42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK   82 (90)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred             CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence            8999999999999999999998866 777777776655443

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=82.87  E-value=0.21  Score=39.59  Aligned_cols=36  Identities=17%  Similarity=0.190  Sum_probs=29.3

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANIN  167 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld  167 (439)
                      .++||||++.|.+.+.+++++++|.+.. .++.+.+.
T Consensus       102 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~  138 (140)
T 2ku7_A          102 EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN  138 (140)
T ss_dssp             CCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred             CCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            3789999999999999999999988765 55555443

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=82.73  E-value=0.21  Score=41.80  Aligned_cols=43  Identities=7%  Similarity=-0.062  Sum_probs=36.6

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLK  175 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~  175 (439)
                      +++|||++.|.+...++++|+.|.+.. .++.+.+.++...+..
T Consensus       112 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~  155 (165)
T 1rk8_A          112 FSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK  155 (165)
T ss_dssp             SEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred             cEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence            579999999999999999999999877 8889999888776653

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=82.52  E-value=0.48  Score=36.74  Aligned_cols=38  Identities=11%  Similarity=0.055  Sum_probs=33.3

Q ss_pred             CCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       134 PrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      ++|||++.|.+...+++++++|.+.. .++.+.+.+++.
T Consensus        61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   99 (110)
T 1wf1_A           61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE   99 (110)
T ss_dssp             ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred             eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence            69999999999999999999999877 788888876653

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=82.41  E-value=0.18  Score=41.66  Aligned_cols=37  Identities=8%  Similarity=-0.186  Sum_probs=31.8

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKL  169 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~  169 (439)
                      +++|||++.|.+.+.+.+++++|.+.+ .+|.+-+.+.
T Consensus        69 ~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~  106 (118)
T 3ue2_A           69 EIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY  106 (118)
T ss_dssp             EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             cceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEc
Confidence            356999999999999999999999988 8887776654

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.30  E-value=0.28  Score=37.56  Aligned_cols=41  Identities=17%  Similarity=0.231  Sum_probs=32.7

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      ++||||++.|.+.+.++++|+. .+.. .++.+.+.++.+.+.
T Consensus        56 ~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~   97 (105)
T 2dh8_A           56 QSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGM   97 (105)
T ss_dssp             CEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSC
T ss_pred             CcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCC
Confidence            6789999999999999999988 5544 777777776655443

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.67  E-value=0.28  Score=39.68  Aligned_cols=37  Identities=11%  Similarity=0.049  Sum_probs=29.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKL  169 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~  169 (439)
                      .++||||++.|.+.+.++++| +|.+.. .+|.+.+..+
T Consensus        53 g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a   90 (109)
T 2dnn_A           53 GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA   90 (109)
T ss_dssp             CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred             CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence            589999999999999999999 676655 6676666533

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=81.48  E-value=2  Score=36.52  Aligned_cols=53  Identities=25%  Similarity=0.261  Sum_probs=41.6

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF  261 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~  261 (439)
                      +|++-+.|++.. ..||..+|..+|+ +.|+  =+.|  |       -|||.|.+.+.|..++..+
T Consensus         7 HV~~l~FP~ewK-t~Di~~lFs~fgg-v~I~--WidD--T-------sAlvvf~~~~~a~~al~~i   59 (101)
T 3ctr_A            7 HVLHVTFPKEWK-TSDLYQLFSAFGN-IQIS--WIDD--T-------SAFVSLSQPEQVKIAVNTS   59 (101)
T ss_dssp             EEEEEECCTTCC-HHHHHHHTTTSEE-EEEE--EEET--T-------EEEEEEEEECHHHHHHHHH
T ss_pred             eEEEEeCChhhh-hHHHHHHHhccCC-EEEE--EEcC--C-------eEEEEecCHHHHHHHHHhc
Confidence            344449999854 7899999999994 6775  4444  5       5999999999999998864

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=81.21  E-value=0.32  Score=37.97  Aligned_cols=42  Identities=12%  Similarity=0.181  Sum_probs=32.3

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .++||||++.|.+.+.++++|+. .+.. .++.+.+..+.+++.
T Consensus        66 g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~  108 (116)
T 1x4b_A           66 KRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREE  108 (116)
T ss_dssp             SSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCC
T ss_pred             CCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCcc
Confidence            47899999999999999999987 4433 677777776555443

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=81.19  E-value=0.64  Score=38.21  Aligned_cols=44  Identities=11%  Similarity=0.031  Sum_probs=37.1

Q ss_pred             CCCCccccccccchHHHHHHHHHHh--hH-HhhhhhccccccCCCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQ--SR-EAQMANINKLENELLKP  176 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~--sr-~araaNld~~~~~P~~~  176 (439)
                      +.||||++.|.+.+.++++++.|.+  .. .+|.+.+++++.++..+
T Consensus        50 ~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~~   96 (105)
T 1sjq_A           50 KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT   96 (105)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCCC
T ss_pred             cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCCc
Confidence            5699999999999999999999875  33 78999999887776654

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=80.75  E-value=0.43  Score=37.68  Aligned_cols=40  Identities=13%  Similarity=0.096  Sum_probs=33.5

Q ss_pred             CCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          135 RGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       135 rGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      ||||++.|.+.+.+++++++|.+.. .++.+.+.+++..+.
T Consensus        65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~  105 (108)
T 2jvo_A           65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK  105 (108)
T ss_dssp             TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence            8999999999999999999999877 778777776655443

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=80.10  E-value=0.28  Score=38.28  Aligned_cols=37  Identities=14%  Similarity=0.099  Sum_probs=29.0

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKL  169 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~  169 (439)
                      .++||||++.|.+.+.++++|+ |.+.. .+|.+.+..+
T Consensus        52 g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a   89 (107)
T 2lmi_A           52 GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEI   89 (107)
T ss_dssp             STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEEC
T ss_pred             CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEEC
Confidence            5899999999999999999998 76644 5555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	439
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.69
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.69
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.68
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.67
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.67
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.67
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.66
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.66
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.65
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.65
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.64
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.63
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.63
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.63
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.63
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.63
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.62
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.62
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.62
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.61
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.61
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.6
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.6
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.6
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.59
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.59
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.59
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.59
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.59
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.58
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.57
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.57
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.57
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.56
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.55
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.55
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	99.55
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.54
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.54
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.54
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.53
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.53
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.53
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.52
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.52
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.52
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.52
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.51
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.5
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.5
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.49
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.48
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.47
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.47
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.47
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.47
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.47
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.46
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.46
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.46
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.46
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.46
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.45
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.45
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.44
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.44
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.43
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.43
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.42
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.41
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.41
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.38
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.36
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.35
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.35
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.33
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.3
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	99.26
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.25
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.25
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.16
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.09
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	99.08
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	99.01
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	98.95
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.81
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	98.63
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	94.72
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	94.17
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	94.15
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	94.1
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	93.88
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	93.77
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	93.57
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	93.38
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	92.97
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	92.43
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	92.42
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	92.37
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	92.14
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	92.12
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	92.09
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	91.9
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	91.89
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	91.82
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	91.8
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	91.67
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	91.57
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	91.42
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	91.4
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	91.2
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	91.18
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	90.96
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	90.7
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	90.64
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	90.62
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	90.24
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	89.93
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	89.52
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	89.4
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	89.38
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	89.21
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	89.19
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	89.04
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	88.73
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	88.66
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	88.55
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	88.53
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	88.22
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	88.05
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	88.02
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	87.84
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	87.72
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	87.39
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	87.33
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	87.23
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	87.2
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	85.61
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	84.96
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	83.78
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	83.63
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	83.25
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	83.15
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	83.12
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	81.15
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	80.54
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	80.35

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.2e-17  Score=128.15  Aligned_cols=86  Identities=22%  Similarity=0.359  Sum_probs=75.1

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      .|+|.+|||+|||...+ +.||+++|..+|.+++++  ...+++||  .+||||||+|++.++|.++|+.|||+.|.   
T Consensus        15 ~p~~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~~~--~~~~~~~g--~~kG~afV~f~~~~~A~~Ai~~lng~~~~---   86 (102)
T d2cpza1          15 GPEGANLFIYHLPQEFG-DQDLLQMFMPFGNVVSAK--VFIDKQTN--LSKCFGFVSYDNPVSAQAAIQSMNGFQIG---   86 (102)
T ss_dssp             CSTTCCEEEESCCSSCC-HHHHHHHHGGGSCCSEEE--EEECSSSC--SEEEEEEEECSSHHHHHHHHHHHTTCEET---
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHHhhccccccc--eeeecccC--CCccceEEEeCCHHHHHHHHHHhCCCEEC---
Confidence            36788999999999875 889999999999999998  56677787  99999999999999999999999999986   


Q ss_pred             eeceeeeeeecCCCC
Q 013598          271 VQKQIRCEMVNSSSS  285 (439)
Q Consensus       271 VEK~ikcE~~~~~S~  285 (439)
                       -+.|+|+.+.+...
T Consensus        87 -g~~i~V~~a~~k~~  100 (102)
T d2cpza1          87 -MKRLKVQLKRSKND  100 (102)
T ss_dssp             -TEECEEECCCCSCC
T ss_pred             -CEEEEEEEeCCCCC
Confidence             35788888766543

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.5e-16  Score=124.04  Aligned_cols=88  Identities=19%  Similarity=0.192  Sum_probs=75.1

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ..++...||||+|||..++ +.||+++|..+|.|.+++  ...++.||  ..||||||+|.+.++|.++|+.|||+.|. 
T Consensus         3 ~~~~~~~~lfV~nL~~~~t-~~~l~~~F~~~g~v~~v~--i~~d~~tg--~~~g~afV~f~~~~~a~~A~~~l~g~~~~-   76 (99)
T d1whwa_           3 SGSSGSGRLFVRNLSYTSS-EEDLEKLFSAYGPLSELH--YPIDSLTK--KPKGFAFVTFMFPEHAVKAYAEVDGQVFQ-   76 (99)
T ss_dssp             CCCCSCEEEEEECCCTTCC-HHHHHHHHHTTSCEEEEE--CCCCTTTC--CCCSEEEEEESSHHHHHHHHHHTTTEESS-
T ss_pred             CCCCCCCEEEEECCCCcCC-HHHHHHHHHhcCCceeee--eccccccc--ccCcceEEEECCHHHHHHHHHHcCCCEEC-
Confidence            3456677999999999865 889999999999999998  55667786  88999999999999999999999999976 


Q ss_pred             ceeeceeeeeeecCCCC
Q 013598          269 GKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~  285 (439)
                         .+.|+|+.+.....
T Consensus        77 ---gr~i~V~~a~~~~~   90 (99)
T d1whwa_          77 ---GRMLHVLPSTIKKE   90 (99)
T ss_dssp             ---SCEEEEEECCCCST
T ss_pred             ---CEEEEEEECCCCCc
Confidence               36788888776543

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.3e-17  Score=124.98  Aligned_cols=85  Identities=25%  Similarity=0.348  Sum_probs=73.8

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      .++..+|||+|||...+ +.+|+++|+.+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.|||..|.   
T Consensus         5 ~~~~~~i~V~nLp~~~t-~~~l~~~f~~~G~v~~v~--i~~d~~t~--~~rg~afV~f~~~~~A~~Ai~~l~g~~~~---   76 (90)
T d2cq0a1           5 ADDNATIRVTNLSEDTR-ETDLQELFRPFGSISRIY--LAKDKTTG--QSKGFAFISFHRREDAARAIAGVSGFGYD---   76 (90)
T ss_dssp             CSSSEEEEEESCCTTCC-HHHHHTTSTTTCCEEEEE--EEECSSSC--SEEEEEEEEESSHHHHHHHHHHTTTCEET---
T ss_pred             CCCCCEEEEECCCCCCC-HHHHHHHHHHhccccccc--cccccccc--ccccceeEEECCHHHHHHHHHHhCCCEEC---
Confidence            35667999999999865 889999999999999998  56677787  89999999999999999999999999986   


Q ss_pred             eeceeeeeeecCCC
Q 013598          271 VQKQIRCEMVNSSS  284 (439)
Q Consensus       271 VEK~ikcE~~~~~S  284 (439)
                       .+.|+|+.+.+++
T Consensus        77 -g~~i~v~~akp~~   89 (90)
T d2cq0a1          77 -HLILNVEWAKPST   89 (90)
T ss_dssp             -TEECEEEESSCCC
T ss_pred             -CEEEEEEeeeCCC
Confidence             3567888876554

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.67  E-value=1.1e-16  Score=121.65  Aligned_cols=81  Identities=19%  Similarity=0.292  Sum_probs=70.4

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      .+.+|||+|||...+ +++|+.+|+.+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.+||..+.++  .
T Consensus         5 ~~t~lfV~nlp~~~t-e~~l~~~F~~~G~i~~~~--~~~d~~~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~   77 (85)
T d1b7fa2           5 KDTNLYVTNLPRTIT-DDQLDTIFGKYGSIVQKN--ILRDKLTG--RPRGVAFVRYNKREEAQEAISALNNVIPEGG--S   77 (85)
T ss_dssp             TTCEEEEESCCTTCC-HHHHHHHHTSSSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCCCTTC--S
T ss_pred             CCCEEEEeCCCCCCC-HHHHHHHHHhhCCEeeee--eecccccc--cCceeEEEEECCHHHHHHHHHHHCCCEeCCC--C
Confidence            445799999999875 889999999999999998  56667786  8999999999999999999999999998876  4


Q ss_pred             ceeeeeee
Q 013598          273 KQIRCEMV  280 (439)
Q Consensus       273 K~ikcE~~  280 (439)
                      +++++..|
T Consensus        78 ~~l~V~~A   85 (85)
T d1b7fa2          78 QPLSVRLA   85 (85)
T ss_dssp             SCCEEEEC
T ss_pred             eEEEEEEC
Confidence            67777654

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=1.1e-16  Score=122.97  Aligned_cols=85  Identities=18%  Similarity=0.280  Sum_probs=72.0

Q ss_pred             CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 013598          188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA  267 (439)
Q Consensus       188 ~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~  267 (439)
                      |..+.+|.+|||+|||...+ +.||.++|..+|.|.+|+  ...+++||  .+||||||+|.+.++|.++|+.+||..|.
T Consensus         1 P~~s~~~~~l~V~nL~~~~t-~~~l~~~F~~~G~i~~v~--i~~d~~tg--~~~g~afV~f~~~~~A~~A~~~lng~~l~   75 (88)
T d1rk8a_           1 PQRSVEGWILFVTSIHEEAQ-EDEIQEKFCDYGEIKNIH--LNLDRRTG--FSKGYALVEYETHKQALAAKEALNGAEIM   75 (88)
T ss_dssp             CCCCC-CEEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTS--SEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred             CCCCCCCCEEEEeCCCCCCC-HHHHHHHHHHcCCccccc--cccccccc--ccccceeEEECCHHHHHHHHHHcCCCEEC
Confidence            34567899999999999865 889999999999999998  56677787  99999999999999999999999999986


Q ss_pred             cceeeceeeeeeec
Q 013598          268 FGKVQKQIRCEMVN  281 (439)
Q Consensus       268 fgKVEK~ikcE~~~  281 (439)
                      +    +.|+|+.+.
T Consensus        76 g----~~l~V~~a~   85 (88)
T d1rk8a_          76 G----QTIQVDWCF   85 (88)
T ss_dssp             T----EECEEEESE
T ss_pred             C----EEEEEEEec
Confidence            4    455665543

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.7e-17  Score=123.21  Aligned_cols=83  Identities=13%  Similarity=0.243  Sum_probs=73.8

Q ss_pred             cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeece
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQ  274 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~  274 (439)
                      .||||+|||..++ +.||+.+|+.+|.|.+++  ...|+.||  .+||||||+|.+.++|.++|+.+||..|.    .++
T Consensus         2 ~rlfV~nlp~~~t-e~~l~~~F~~~G~v~~v~--i~~d~~tg--~~rg~aFV~f~~~~~A~~a~~~l~~~~l~----g~~   72 (85)
T d2u2fa_           2 HKLFIGGLPNYLN-DDQVKELLTSFGPLKAFN--LVKDSATG--LSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKK   72 (85)
T ss_dssp             CCEEEETCCSSCC-SHHHHHHHTSSSCEEEEE--EECCCSSS--CCCCEEEEEESSSHHHHHHHHTSSSCCCS----SSC
T ss_pred             CEEEEECCCCCCC-HHHHHHHHHhcCccceEE--eecccccc--ccceeEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence            4899999999876 899999999999999998  55677787  89999999999999999999999999987    467


Q ss_pred             eeeeeecCCCCC
Q 013598          275 IRCEMVNSSSSN  286 (439)
Q Consensus       275 ikcE~~~~~S~~  286 (439)
                      |+|+.++.++.+
T Consensus        73 l~V~~A~~~~~~   84 (85)
T d2u2fa_          73 LLVQRASVGAKN   84 (85)
T ss_dssp             CEEEECCCCCCC
T ss_pred             EEEEECCCCCCC
Confidence            889888876554

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.2e-16  Score=122.00  Aligned_cols=86  Identities=23%  Similarity=0.332  Sum_probs=72.5

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      +.+.-||||||||...+ +.||+++|..+|.|.++.  ...++.||  .+||||||+|.+.++|.++|+.+||+.|.+  
T Consensus         2 ~~~~~kifV~nLp~~~t-~~~l~~~F~~~G~i~~~~--~~~~~~~~--~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g--   74 (90)
T d1x5sa1           2 ASDEGKLFVGGLSFDTN-EQSLEQVFSKYGQISEVV--VVKDRETQ--RSRGFGFVTFENIDDAKDAMMAMNGKSVDG--   74 (90)
T ss_dssp             CCCCSEEEEESCCTTCC-HHHHHHHHHHHSCCCEEE--ECCCSSSC--SCCSEEEEECSSHHHHHHHHHHHTTCCTTS--
T ss_pred             CCCCCEEEEECCCCcCC-HHHHHHhhhcccccccee--eccccccc--cccceEEEEECCHHHHHHHHHHcCCCEECC--
Confidence            35678999999999865 889999999999999997  45555565  899999999999999999999999999763  


Q ss_pred             eeceeeeeeecCCCC
Q 013598          271 VQKQIRCEMVNSSSS  285 (439)
Q Consensus       271 VEK~ikcE~~~~~S~  285 (439)
                        +.++|+.+...+.
T Consensus        75 --~~l~V~~a~~~~~   87 (90)
T d1x5sa1          75 --RQIRVDQAGKSSD   87 (90)
T ss_dssp             --CCCEEEEEECCCC
T ss_pred             --EEEEEEEcCCCCC
Confidence              5677777765544

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.3e-16  Score=122.58  Aligned_cols=83  Identities=20%  Similarity=0.239  Sum_probs=73.4

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK  273 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK  273 (439)
                      ..+|||+|||...+ +.||+++|..+|.|.+++  ...++.||  .+||||||.|.+.++|.++|+.|||+.|.+    +
T Consensus         9 ~~tlfV~nLp~~~t-~~~l~~~F~~~G~v~~v~--~~~d~~tg--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~   79 (93)
T d1x5ua1           9 DATVYVGGLDEKVS-EPLLWELFLQAGPVVNTH--MPKDRVTG--QHQGYGFVEFLSEEDADYAIKIMDMIKLYG----K   79 (93)
T ss_dssp             TTEEEEECCCTTCC-HHHHHHHHHTTSCEEEEE--CCBCSSSC--SBCSCEEEEESSHHHHHHHHHHSSSCBCSS----C
T ss_pred             CCEEEEeCCCCcCC-HHHHHHHHHHhCCccccc--eeeccccc--ccccceEEEECCHHHHHHHHHHcCCCEECC----E
Confidence            46899999999875 889999999999999998  56777787  999999999999999999999999999874    5


Q ss_pred             eeeeeeecCCCC
Q 013598          274 QIRCEMVNSSSS  285 (439)
Q Consensus       274 ~ikcE~~~~~S~  285 (439)
                      .|+|..+.++..
T Consensus        80 ~l~V~~A~~~~~   91 (93)
T d1x5ua1          80 PIRVNKASAHNK   91 (93)
T ss_dssp             BCEEEETTTTSC
T ss_pred             EEEEEEcCCCCC
Confidence            778888877654

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.65  E-value=1.8e-16  Score=118.86  Aligned_cols=79  Identities=23%  Similarity=0.378  Sum_probs=69.1

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK  273 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK  273 (439)
                      +-+|||+|||...+ +.+|+++|+.+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.|||+.|.    .+
T Consensus         2 ~t~l~V~nLp~~~t-~~~l~~~F~~~G~v~~~~--i~~~~~~g--~~~g~afV~f~~~~~A~~ai~~lng~~~~----g~   72 (82)
T d1b7fa1           2 NTNLIVNYLPQDMT-DRELYALFRAIGPINTCR--IMRDYKTG--YSYGYAFVDFTSEMDSQRAIKVLNGITVR----NK   72 (82)
T ss_dssp             CSEEEEECCCTTCC-HHHHHHHHHTTSCEEEEE--CCEETTTT--EECSEEEEEESSHHHHHHHHHHHTTCEET----TE
T ss_pred             CCEEEEeCCCCCCC-HHHHHHHHHHhCCcceee--eeeecccC--CccccceEEECCHHHHHHHHHHhCCCEEC----CE
Confidence            35799999999865 889999999999999998  55666787  99999999999999999999999999986    46


Q ss_pred             eeeeeeec
Q 013598          274 QIRCEMVN  281 (439)
Q Consensus       274 ~ikcE~~~  281 (439)
                      .|+|+.+.
T Consensus        73 ~l~v~~a~   80 (82)
T d1b7fa1          73 RLKVSYAR   80 (82)
T ss_dssp             ECEEEECC
T ss_pred             EEEEEEcC
Confidence            77777664

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.2e-16  Score=118.14  Aligned_cols=78  Identities=17%  Similarity=0.278  Sum_probs=68.4

Q ss_pred             cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeece
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQ  274 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~  274 (439)
                      .+|||+|||...+ ++||+++|..+|.|.+|+  ...++++|  .+||||||+|.+.++|.++|+.+||+.|.+    +.
T Consensus         3 t~l~V~nLp~~~t-e~~l~~~f~~~G~v~~v~--i~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~g~~~~g----~~   73 (82)
T d1fxla1           3 TNLIVNYLPQNMT-QEEFRSLFGSIGEIESCK--LVRDKITG--QSLGYGFVNYIDPKDAEKAINTLNGLRLQT----KT   73 (82)
T ss_dssp             SEEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT----EE
T ss_pred             CEEEEECCCCCCC-HHHHHHHHHHhCCccccc--ceeeccCC--CceeeEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence            4799999999975 889999999999999998  45666676  899999999999999999999999999873    56


Q ss_pred             eeeeeec
Q 013598          275 IRCEMVN  281 (439)
Q Consensus       275 ikcE~~~  281 (439)
                      ++|+.+.
T Consensus        74 l~v~~Ak   80 (82)
T d1fxla1          74 IKVSYAR   80 (82)
T ss_dssp             CEEEECC
T ss_pred             EEEEEee
Confidence            7777764

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.9e-16  Score=120.54  Aligned_cols=81  Identities=21%  Similarity=0.302  Sum_probs=70.9

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      ..-+|||+|||...+ +.+|+++|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.+||..|.+    
T Consensus         4 ~~~tlfV~nLp~~~t-e~~l~~~F~~~G~i~~v~--i~~d~~~~--~~kg~afV~f~~~~~A~~ai~~l~~~~i~g----   74 (89)
T d2cqba1           4 TKRVLYVGGLAEEVD-DKVLHAAFIPFGDITDIQ--IPLDYETE--KHRGFAFVEFELAEDAAAAIDNMNESELFG----   74 (89)
T ss_dssp             CCSCEEEESCCSSCC-HHHHHHHHTTTSCCCCEE--CCCCSSSC--CCSSEEEECCSSHHHHHHHHHHHTTEEETT----
T ss_pred             CCcEEEEeCCCCcCC-HHHHHHHHhhCCeEEecc--cccccccc--cccceeEEEECCHHHHHHHHHHcCCCEECC----
Confidence            345899999999875 889999999999999998  56777787  899999999999999999999999999863    


Q ss_pred             ceeeeeeecC
Q 013598          273 KQIRCEMVNS  282 (439)
Q Consensus       273 K~ikcE~~~~  282 (439)
                      +.|+|+.+.+
T Consensus        75 ~~l~v~~a~p   84 (89)
T d2cqba1          75 RTIRVNLAKP   84 (89)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEEeCC
Confidence            5678877754

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=3.9e-16  Score=117.58  Aligned_cols=77  Identities=16%  Similarity=0.187  Sum_probs=67.0

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeecee
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQI  275 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~i  275 (439)
                      ||||+|||...+ +.||+++|..+|.|.++++.  .++ ||  .+||||||+|.+.++|.++|+.|||+.+.    -++|
T Consensus         2 rl~V~nLp~~~~-~~~l~~~F~~~G~v~~~~i~--~~~-~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~l~----g~~l   71 (78)
T d1no8a_           2 KLLVSNLDFGVS-DADIQELFAEFGTLKKAAVH--YDR-SG--RSLGTADVHFERKADALKAMKQYNGVPLD----GRPM   71 (78)
T ss_dssp             EEEEESCCTTCC-HHHHHHHHHHHSCEEEEEES--CSS-CC--CSCCEEEEEESCHHHHHHHHHHHTTCEET----TEEC
T ss_pred             EEEEECCCCCCC-HHHHHHHHHHhCCCeEEEEE--Eee-cc--ccceeEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence            799999999865 88999999999999999844  343 54  78999999999999999999999999987    3678


Q ss_pred             eeeeecC
Q 013598          276 RCEMVNS  282 (439)
Q Consensus       276 kcE~~~~  282 (439)
                      +|+++.+
T Consensus        72 ~V~~a~S   78 (78)
T d1no8a_          72 NIQLVTS   78 (78)
T ss_dssp             EEEEECC
T ss_pred             EEEEeeC
Confidence            8888754

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.63  E-value=1.5e-15  Score=123.91  Aligned_cols=83  Identities=17%  Similarity=0.279  Sum_probs=72.2

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK  273 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK  273 (439)
                      .-+|||||||.+.+ +.||+.+|..+|.|.+|+  +..++.||  .+||||||+|.+.++|.++|+.|||..|.+    +
T Consensus        42 ~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~--i~~d~~t~--~~rg~afV~f~~~~~A~~Ai~~lng~~~~g----r  112 (139)
T d1u6fa1          42 LRNLMVNYIPTTVD-EVQLRQLFERYGPIESVK--IVCDRETR--QSRGYGFVKFQSGSSAQQAIAGLNGFNILN----K  112 (139)
T ss_dssp             TSEEEEESCSTTCC-HHHHHHHHHHHSCEEEEE--EEEETTTT--EEEEEEEEEESSHHHHHHHHHHTTTEECSS----C
T ss_pred             CCEEEEeCCCCCCC-HHHHHHHHHhhccccccc--cccccccc--cccceeeEEECCHHHHHHHHHHhCCCEECC----E
Confidence            34799999999865 889999999999999998  56677787  999999999999999999999999999873    5


Q ss_pred             eeeeeeecCCCC
Q 013598          274 QIRCEMVNSSSS  285 (439)
Q Consensus       274 ~ikcE~~~~~S~  285 (439)
                      .|+|+.+.....
T Consensus       113 ~l~V~~a~~~~~  124 (139)
T d1u6fa1         113 RLKVALAASGHQ  124 (139)
T ss_dssp             EEEEEESSCCCC
T ss_pred             EEEEEEcCCCCC
Confidence            678888765543

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=8.6e-16  Score=119.31  Aligned_cols=83  Identities=19%  Similarity=0.229  Sum_probs=72.3

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      ...+.+|||+|||..++ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.|||..|.+  
T Consensus         4 ~~~s~tlfV~nlp~~~t-e~~l~~~F~~~G~i~~v~--i~~~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g--   76 (93)
T d1h2vz_           4 LKKSCTLYVGNLSFYTT-EEQIYELFSKSGDIKKII--MGLDKMKK--TACGFCFVEYYSRADAENAMRYINGTRLDD--   76 (93)
T ss_dssp             TTTCCEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHTTTSEETT--
T ss_pred             cCCCCEEEEeCCCCCCC-HHHHHHHHHHHCCcceec--cccccccc--cccceEEEEECCHHHHHHHHHHhCCCEECC--
Confidence            35678999999999865 889999999999999998  55667786  899999999999999999999999999863  


Q ss_pred             eeceeeeeeecC
Q 013598          271 VQKQIRCEMVNS  282 (439)
Q Consensus       271 VEK~ikcE~~~~  282 (439)
                        +.|+|+.+.+
T Consensus        77 --r~i~V~~a~~   86 (93)
T d1h2vz_          77 --RIIRTDWDAG   86 (93)
T ss_dssp             --EECEEEEESC
T ss_pred             --EEEEEEEcCC
Confidence              5778887643

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.8e-16  Score=118.16  Aligned_cols=90  Identities=17%  Similarity=0.157  Sum_probs=73.7

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeec------cccCCCCCCCcccceEEEeecCHHHHHHHHHHhC
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPV------VSGNKKTKDPICKGFAFVDFESEDYATRFVQLFS  262 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpA------v~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~N  262 (439)
                      +..++..+|||+|||...+ +.||+++|+.+|.|..+...      ...+++||  .+||||||+|.+.++|.++|+.||
T Consensus         3 ~~~~~~~~i~V~nLp~~~t-e~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~--~~~g~afV~f~~~~~a~~Ai~~l~   79 (101)
T d2cpea1           3 DEDSDNSAIYVQGLNDSVT-LDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETG--KPKGDATVSYEDPPTAKAAVEWFD   79 (101)
T ss_dssp             CCCCCCCEEEEECCCTTCC-HHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTC--SBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred             CCCCCCCEEEEECCCCcCC-HHHHHHHHHHCceEEEeeecccceeEEeeccccc--cccceeeEEecCHHHHHHHHHHhC
Confidence            4456778999999999865 88999999999987533221      44667786  899999999999999999999999


Q ss_pred             CceeccceeeceeeeeeecCCCC
Q 013598          263 RQIIAFGKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       263 Gq~~~fgKVEK~ikcE~~~~~S~  285 (439)
                      |..|.    -+.|+|+.+..+.+
T Consensus        80 g~~~~----gr~i~V~~a~~~~p   98 (101)
T d2cpea1          80 GKDFQ----GSKLKVSLARKKPP   98 (101)
T ss_dssp             TCEET----TEECEEECSSCCCC
T ss_pred             CCEEC----CEEEEEEEcCCCCC
Confidence            99987    47788888876544

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.8e-16  Score=118.74  Aligned_cols=79  Identities=18%  Similarity=0.262  Sum_probs=67.6

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      .+-+|||||||...+ +.+|+.+|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.|||+.+.+.  .
T Consensus         5 k~~~lfV~nLp~~~t-e~~L~~~F~~~G~v~~v~--i~~d~~~g--~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~--~   77 (85)
T d1fxla2           5 RDANLYVSGLPKTMT-QKELEQLFSQYGRIITSR--ILVDQVTG--VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA--T   77 (85)
T ss_dssp             TTCEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCCCTTC--S
T ss_pred             CCCEEEEeCCCCCCC-HHHHHHHHHHhCCccccc--cccccccc--cCCCeeEEEEcCHHHHHHHHHHhCCCEeCCC--C
Confidence            346799999999865 889999999999999998  55677676  8999999999999999999999999998763  3


Q ss_pred             ceeeee
Q 013598          273 KQIRCE  278 (439)
Q Consensus       273 K~ikcE  278 (439)
                      ++|+|.
T Consensus        78 ~~i~V~   83 (85)
T d1fxla2          78 EPITVK   83 (85)
T ss_dssp             SCCEEE
T ss_pred             EEEEEE
Confidence            455554

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.1e-16  Score=117.69  Aligned_cols=77  Identities=21%  Similarity=0.251  Sum_probs=67.8

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeecee
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQI  275 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~i  275 (439)
                      .|||||||...+ +.+|+.+|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.|||..|.+    +.|
T Consensus         2 slfV~nL~~~~t-e~~l~~~F~~~G~i~~v~--i~~d~~tg--~~~g~aFV~f~~~~~a~~ai~~l~g~~~~g----r~i   72 (80)
T d1cvja1           2 SLYVGDLHPDVT-EAMLYEKFSPAGPILSIR--VCRDMITR--RSLGYAYVNFQQPADAERALDTMNFDVIKG----KPV   72 (80)
T ss_dssp             EEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHTTSTTCEETT----EEC
T ss_pred             EEEEeCCCCcCC-HHHHHHHHHHhCCEeEEE--EEeccccc--CCCCceEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence            599999999865 889999999999999998  55677787  999999999999999999999999999864    467


Q ss_pred             eeeeec
Q 013598          276 RCEMVN  281 (439)
Q Consensus       276 kcE~~~  281 (439)
                      +|..+.
T Consensus        73 ~v~~a~   78 (80)
T d1cvja1          73 RIMWSQ   78 (80)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            777653

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=5.8e-16  Score=117.11  Aligned_cols=78  Identities=17%  Similarity=0.287  Sum_probs=65.1

Q ss_pred             EEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCC-CcccceEEEeecCHHHHHHHHHHhCCceeccceeecee
Q 013598          197 VRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKD-PICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQI  275 (439)
Q Consensus       197 VrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgD-p~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~i  275 (439)
                      |||+|||.+++ +.+|+.+|..+|.|.++++.  .++.|+. +.|||||||+|.+.++|.++|+.+||+.|.+    +.|
T Consensus         1 LfV~nLp~~~t-~~~l~~~F~~~G~v~~v~i~--~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g----~~i   73 (85)
T d2cpfa1           1 LFIKNLNFSTT-EETLKGVFSKVGAIKSCTIS--KKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG----HKL   73 (85)
T ss_dssp             EEEESCCTTCC-HHHHHHHHHTTSCEEEEEEE--EEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT----EEC
T ss_pred             CEEcCCCCCCC-HHHHHHHHHHhCCcccccee--cccccccccccceEEEEEECCHHHHHHHHHHhCCCEECC----EEE
Confidence            79999999865 88999999999999999844  4444543 3689999999999999999999999999873    456


Q ss_pred             eeeeec
Q 013598          276 RCEMVN  281 (439)
Q Consensus       276 kcE~~~  281 (439)
                      +++.+.
T Consensus        74 ~V~~a~   79 (85)
T d2cpfa1          74 EVRISE   79 (85)
T ss_dssp             EEECSS
T ss_pred             EEEECC
Confidence            666654

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.4e-15  Score=116.30  Aligned_cols=90  Identities=19%  Similarity=0.244  Sum_probs=73.3

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ..+++-+|||||||.+.+ +.+|+.+|..+|.+.+++  ...++.|+  .+||||||+|.+.++|.++|+.+|+.....|
T Consensus         4 ~~~~~~tlfV~nLp~~~t-e~~l~~~f~~~G~v~~~~--~~~~~~~~--~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g   78 (98)
T d1x4ha1           4 DVTEGKTVFIRNLSFDSE-EEALGEVLQQFGDLKYVR--VVLHPDTE--HSKGCAFAQFMTQEAAQKCLAAASLEAEGGG   78 (98)
T ss_dssp             CCCCCCCEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--CCBCSSSC--CBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred             CCCCCCEEEEcCCCCcCC-HHHHHHHHhccccceeee--eccccccc--cccceEEEEEcCHHHHHHHHHHcccccccCC
Confidence            345677899999999876 889999999999999998  55666676  8999999999999999999999987665543


Q ss_pred             ee--eceeeeeeecCCC
Q 013598          270 KV--QKQIRCEMVNSSS  284 (439)
Q Consensus       270 KV--EK~ikcE~~~~~S  284 (439)
                      ..  -+.++|+.+.+++
T Consensus        79 ~~~~gr~l~v~~a~~k~   95 (98)
T d1x4ha1          79 LKLDGRQLKVDLAVTRD   95 (98)
T ss_dssp             EESSSCEEEEECCCCCC
T ss_pred             cEECCEEEEEEECCCCC
Confidence            32  2578888776544

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9.3e-16  Score=115.81  Aligned_cols=72  Identities=21%  Similarity=0.280  Sum_probs=65.2

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ++-+|||+|||..++ +.+|+++|+.+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.+||..|.+-
T Consensus         8 ~~~~l~V~nL~~~~t-e~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr   79 (83)
T d2cqca1           8 PNCCLGVFGLSLYTT-ERDLREVFSKYGPIADVS--IVYDQQSR--RSRGFAFVYFENVDDAKEAKERANGMELDGR   79 (83)
T ss_dssp             GGGCEEEESCCSSCC-HHHHHHHHHTTSCEEEEE--EEECSSSS--SEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             CCCEEEEeCCCCCCC-HHHHHHHHHHhCCCcccc--cccccccc--ccccceEEEECCHHHHHHHHHHcCCCEECCE
Confidence            467899999999865 889999999999999998  55677786  8999999999999999999999999998753

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.7e-16  Score=121.28  Aligned_cols=78  Identities=18%  Similarity=0.319  Sum_probs=68.4

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeecee
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQI  275 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~i  275 (439)
                      +|||+|||...+ +.+|+++|+.+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.|||+.|.+    +.|
T Consensus        10 tl~V~nLp~~~t-e~~l~~~f~~~G~i~~v~--i~~~~~tg--~~~g~afV~f~~~~~a~~ai~~l~~~~~~g----~~i   80 (104)
T d1p1ta_          10 SVFVGNIPYEAT-EEQLKDIFSEVGPVVSFR--LVYDRETG--KPKGYGFCEYQDQETALSAMRNLNGREFSG----RAL   80 (104)
T ss_dssp             CEEEESCCTTSC-HHHHHHHHHTTSCCSEEE--EEEETTTT--EEEEEEEEECSCHHHHHHHHHHSSSBSCSS----SCB
T ss_pred             EEEEECCCCcCC-HHHHHHhhhccccccccc--ccccccee--ccCCceEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence            699999999865 889999999999999998  55677786  899999999999999999999999999874    566


Q ss_pred             eeeeecC
Q 013598          276 RCEMVNS  282 (439)
Q Consensus       276 kcE~~~~  282 (439)
                      +|+.+..
T Consensus        81 ~V~~a~~   87 (104)
T d1p1ta_          81 RVDNAAS   87 (104)
T ss_dssp             EEEETTC
T ss_pred             EEEECCC
Confidence            7776554

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1e-15  Score=115.25  Aligned_cols=78  Identities=19%  Similarity=0.290  Sum_probs=67.1

Q ss_pred             EEEcCCCCCCchHHHHHHHhccCCCeeEE-eeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeecee
Q 013598          197 VRLLNLPKKKNIHRDLKSAFKGVPGIINI-IPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQI  275 (439)
Q Consensus       197 VrVGNLPkk~ni~kDL~~aFk~vGgvisI-kpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~i  275 (439)
                      |||+|||...+ +.||+++|..+|.|+++ +  ...++.||  .+||||||+|.+.++|.++|+.+||..|.    .+++
T Consensus         1 lfV~nLp~~~t-e~~l~~~F~~~G~i~~~~~--i~~~~~~g--~~~g~afV~f~~~~~a~~Ai~~~~g~~~~----gr~l   71 (83)
T d1x5ta1           1 IFIGNLDPEID-EKLLYDTFSAFGVILQTPK--IMRDPDTG--NSKGYAFINFASFDASDAAIEAMNGQYLC----NRPI   71 (83)
T ss_dssp             EEEECCCTTCC-HHHHHHHHHTTSCBSSCCE--ECCCTTTC--SCCSEEEEEBSSHHHHHHHHHTTTTCEET----TEEC
T ss_pred             CEEcCCCCcCc-HHHHHHHHHHhCceeeeEE--EEeecccc--ccCceEEEEECCHHHHHHHHHhCCCcEEC----CEEE
Confidence            79999999865 88999999999998775 4  45677786  89999999999999999999999999986    3567


Q ss_pred             eeeeecCC
Q 013598          276 RCEMVNSS  283 (439)
Q Consensus       276 kcE~~~~~  283 (439)
                      +|+.+..+
T Consensus        72 ~v~~a~~k   79 (83)
T d1x5ta1          72 TVSYAFKK   79 (83)
T ss_dssp             EEEESCCC
T ss_pred             EEEEecCC
Confidence            88877643

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=9e-16  Score=115.12  Aligned_cols=77  Identities=16%  Similarity=0.237  Sum_probs=61.2

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeecee
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQI  275 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~i  275 (439)
                      +|||+|||...+ +.||+++|+.+|.|.+++  ...++++|  .+||||||+|.+.++|.++|+.+||..|.+    +.|
T Consensus         3 tl~v~nLp~~~t-~~~l~~~f~~~G~v~~~~--~~~~~~~~--~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g----~~i   73 (81)
T d2ghpa1           3 TLWMTNFPPSYT-QRNIRDLLQDINVVALSI--RLPSLRFN--TSRRFAYIDVTSKEDARYCVEKLNGLKIEG----YTL   73 (81)
T ss_dssp             EEEEECCCTTCC-HHHHHHHHHHTTCCCCEE--ECC---------CCEEEEECSSHHHHHHHHHHHTTCEETT----EEC
T ss_pred             EEEEECCCCcCC-HHHHHHHHHHhCcEEeee--eecccccc--cccceeEEEECCHHHHHHHHHHhCCCEECC----EEE
Confidence            899999999865 889999999999998776  45566676  889999999999999999999999999874    556


Q ss_pred             eeeeec
Q 013598          276 RCEMVN  281 (439)
Q Consensus       276 kcE~~~  281 (439)
                      ++..++
T Consensus        74 ~V~~a~   79 (81)
T d2ghpa1          74 VTKVSN   79 (81)
T ss_dssp             EEEECC
T ss_pred             EEEEcc
Confidence            666554

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.2e-15  Score=116.81  Aligned_cols=68  Identities=16%  Similarity=0.246  Sum_probs=61.6

Q ss_pred             cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      -+|||||||...+ ++||+.+|+.+|.|.+++  ...++.||  .+||||||+|.+.+.|.++|+ ++|+.|.+
T Consensus         7 ~~lfV~nlp~~~t-e~~l~~~F~~~G~i~~v~--i~~d~~tg--~~kG~afV~f~~~~~a~~ai~-~~~~~i~G   74 (84)
T d1l3ka1           7 RKLFIGGLSFETT-DESLRSHFEQWGTLTDCV--VMRDPNTK--RSRGFGFVTYATVEEVDAAMN-ARPHKVDG   74 (84)
T ss_dssp             GEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHH-TCSCEETT
T ss_pred             cEEEEECCCCCCC-HHHHHHHHHhhcccccee--ecccccCC--CcccEEEEEEcCHHHHHHHHH-hCCCEECC
Confidence            4899999999876 899999999999999998  56777787  899999999999999999998 59999864

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=6.2e-16  Score=117.31  Aligned_cols=67  Identities=19%  Similarity=0.283  Sum_probs=60.8

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      +|||+|||.+.+ +++|+++|..+|.|.+++  ...++.||  .|||||||+|.+.++|+++|+ +||+.|.+
T Consensus         2 klfV~nLp~~~t-e~~l~~~F~~~G~i~~v~--i~~d~~tg--~~kG~aFV~f~~~~~a~~al~-~~~~~i~G   68 (77)
T d1uawa_           2 KMFIGGLSWQTT-QEGLREYFGQFGEVKECL--VMRDPLTK--RSRGFGFVTFMDQAGVDKVLA-QSRHELDS   68 (77)
T ss_dssp             CEEEESCCSSCC-SHHHHHHHTTTSCCCCEE--EECCCCSS--SCSSEEEECCCCTTHHHHHHH-TTTCCCSS
T ss_pred             EEEEeCCCCcCC-HHHHHHHHHHhCCcceee--eecccCCC--CccceEEEEECCHHHHHHHHH-cCCCEECC
Confidence            799999999865 889999999999999998  55677787  899999999999999999998 59998874

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.7e-15  Score=112.84  Aligned_cols=67  Identities=18%  Similarity=0.286  Sum_probs=59.8

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ||||||||.+++ +.||+++|+.+|.+.+++  ...++.|+  .+||||||+|.+.+.|.++++ +||+.|.+
T Consensus         4 ~lfV~nLp~~~t-e~~l~~~F~~~G~i~~~~--~~~~~~~~--~~~g~afV~f~~~e~~~~al~-~~~~~l~G   70 (79)
T d1l3ka2           4 KIFVGGIKEDTE-EHHLRDYFEQYGKIEVIE--IMTDRGSG--KKRGFAFVTFDDHDSVDKIVI-QKYHTVNG   70 (79)
T ss_dssp             EEEEECCTTTCC-HHHHHHHHTTTSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHH-CSCCEETT
T ss_pred             EEEECCCCCcCC-HHHHHHHHHHhccccccc--cccCCCCc--ccccEEEEEEcCHHHHHHHHH-hCCCEECC
Confidence            799999999875 889999999999999998  55666675  999999999999999999996 79999875

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.6e-15  Score=113.69  Aligned_cols=67  Identities=16%  Similarity=0.271  Sum_probs=60.4

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ||||||||.+.+ +++|+++|+.+|.|.+++  ...++.||  .+||||||+|.+.++|+++|+ ++|+.|.+
T Consensus         1 klfV~nl~~~~t-e~~l~~~F~~~G~i~~~~--i~~d~~t~--~~kg~afV~f~~~~~a~~Al~-~~~~~l~G   67 (75)
T d1hd0a_           1 KMFIGGLSWDTT-KKDLKDYFSKFGEVVDCT--LKLDPITG--RSRGFGFVLFKESESVDKVMD-QKEHKLNG   67 (75)
T ss_dssp             CEEEECCCTTCC-HHHHHHHHHTTSCEEEEE--CCCBTTTT--BCCSEEEEEESSHHHHHHHHH-TCCCCBTT
T ss_pred             CEEEeCCCCcCC-HHHHHHHHHhhccccccc--cccCCCCC--CcCceEEEEECCHHHHHHHHh-cCCCEECC
Confidence            699999999865 889999999999999998  55666786  899999999999999999997 79998865

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.5e-15  Score=115.46  Aligned_cols=81  Identities=12%  Similarity=0.144  Sum_probs=68.9

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      +.-+|||||||...+ +.+|+++|..+|.|.+|+  ...++.|+    ||||||+|.+.++|.++|+.+||+.|.+    
T Consensus         7 ~~~tl~V~nLp~~~t-e~~l~~~F~~~G~i~~v~--i~~d~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g----   75 (90)
T d2cqia1           7 QPRTLYVGNLSRDVT-EVLILQLFSQIGPCKSCK--MITEHTSN----DPYCFVEFYEHRDAAAALAAMNGRKILG----   75 (90)
T ss_dssp             CCCEEEEESCCTTCC-HHHHHHHHHHHSCEEEEE--EECCCCSS----CCEEEEEESSHHHHHHHHHHHTTEEETT----
T ss_pred             CCCEEEEECCCCCCC-HHHHHHHHHhcCCceeee--eecccCcc----ceeeEEEECCHHHHHHHHHHcCCCEECC----
Confidence            345899999999865 889999999999999998  45566565    8999999999999999999999999873    


Q ss_pred             ceeeeeeecCCC
Q 013598          273 KQIRCEMVNSSS  284 (439)
Q Consensus       273 K~ikcE~~~~~S  284 (439)
                      +.|+|..+...+
T Consensus        76 ~~i~v~~a~~~~   87 (90)
T d2cqia1          76 KEVKVNWATTPS   87 (90)
T ss_dssp             EEEEEEECCCTT
T ss_pred             EEEEEEEcCCCC
Confidence            578888776543

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=4e-15  Score=115.69  Aligned_cols=86  Identities=19%  Similarity=0.323  Sum_probs=71.2

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh-CCceeccce
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF-SRQIIAFGK  270 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~-NGq~~~fgK  270 (439)
                      ....+|||+|||...+ +.+|+.+|+.+|.|.+++++...+ .||  .+||||||+|.+.++|.++|+.+ ||..|. | 
T Consensus         6 ~~~~~l~V~nLp~~~~-e~~l~~~F~~~G~i~~v~i~~~~~-~~g--~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~-G-   79 (94)
T d2cpha1           6 QTTSKILVRNIPFQAN-QREIRELFSTFGELKTVRLPKKMT-GTG--AHRGFGFVDFITKQDAKKAFNALCHSTHLY-G-   79 (94)
T ss_dssp             SCCCCEEEESCCTTCC-HHHHHHHHHTTSCEEEEECCCCCS-SSC--SSCSEEEEEESSHHHHHHHHHHHHTCCBSS-S-
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHHHhCCceEEEEEeccc-cCC--CcccEEEEEECCHHHHHHHHHHccCCcEEC-C-
Confidence            4567899999999865 889999999999999998443322 265  89999999999999999999997 898875 3 


Q ss_pred             eeceeeeeeecCCCC
Q 013598          271 VQKQIRCEMVNSSSS  285 (439)
Q Consensus       271 VEK~ikcE~~~~~S~  285 (439)
                        +.|+++.++.+..
T Consensus        80 --r~l~V~~A~~~~~   92 (94)
T d2cpha1          80 --RRLVLEWADSEVT   92 (94)
T ss_dssp             --CBCEEEECCCCCC
T ss_pred             --EEEEEEEcCCCCC
Confidence              6788888876654

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.9e-15  Score=116.85  Aligned_cols=82  Identities=20%  Similarity=0.324  Sum_probs=69.3

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      ...+|||+|||...+ +.||+++|..+|.|.+|+  ...++.||  .+||||||+|.+.++|.++|+.+|| .|. |   
T Consensus         9 ~~~~lfV~nLp~~~t-e~~l~~~F~~~G~i~~v~--i~~d~~tg--~~kg~afV~f~~~~~A~~Ai~~~~~-~l~-G---   78 (103)
T d2cqda1           9 TFTKIFVGGLPYHTT-DASLRKYFEGFGDIEEAV--VITDRQTG--KSRGYGFVTMADRAAAERACKDPNP-IID-G---   78 (103)
T ss_dssp             SSSEEEEECCCSSCC-HHHHHHHHHTTSCEEEEE--ESCCSSSC--CCCSEEEEEESSHHHHHHHHTCSSC-EET-T---
T ss_pred             CCcEEEEeCCCCcCc-HHHHHHHHhhccccccee--cccccccc--ccCCeEEEEECCHHHHHHHHHHCCC-cCC-C---
Confidence            445799999999865 889999999999999998  55566686  8999999999999999999999987 554 4   


Q ss_pred             ceeeeeeecCCC
Q 013598          273 KQIRCEMVNSSS  284 (439)
Q Consensus       273 K~ikcE~~~~~S  284 (439)
                      +.++|.++...+
T Consensus        79 r~l~V~~a~~~~   90 (103)
T d2cqda1          79 RKANVNLAYLGA   90 (103)
T ss_dssp             EECEEEESTTTC
T ss_pred             EEEEEEEcCCCC
Confidence            568888876544

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.5e-15  Score=116.43  Aligned_cols=71  Identities=17%  Similarity=0.308  Sum_probs=61.8

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .+..+|||+|||...+ +.+|+.+|..+|.|.++++.  .+ .|+  .+||||||+|.+.++|.++|+.|||+.|.+
T Consensus        16 ~~~~~lfV~nLp~~~t-e~~L~~~F~~~G~i~~~~~~--~~-~~~--~~~g~afV~f~~~~~A~~Ai~~lng~~i~g   86 (101)
T d1x5oa1          16 QDPTNLYISNLPLSMD-EQELENMLKPFGQVISTRIL--RD-SSG--TSRGVGFARMESTEKCEAVIGHFNGKFIKT   86 (101)
T ss_dssp             CCTTEEEEESCCTTCC-HHHHHHTTTTTSCEEEEEEE--EC-SSS--CEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHhhcccccceeee--cc-ccc--ccccceeEEeCCHHHHHHHHHHhCCCEECC
Confidence            3557999999999865 88999999999999988743  33 354  789999999999999999999999999886

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.2e-15  Score=112.23  Aligned_cols=67  Identities=24%  Similarity=0.336  Sum_probs=60.8

Q ss_pred             EEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          197 VRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       197 VrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      |||+|||...+ +++|+.+|..+|.|.+++  ...++.|+  .+||||||+|.+.++|.++|+.|||+.|.+
T Consensus         1 lyV~nLp~~~t-e~~l~~~F~~~G~v~~~~--~~~~~~~~--~~~g~afV~f~~~~~A~~Ai~~lng~~~~G   67 (72)
T d1x4ea1           1 LYIRGLQPGTT-DQDLVKLCQPYGKIVSTK--AILDKTTN--KCKGYGFVDFDSPSAAQKAVTALKASGVQA   67 (72)
T ss_dssp             EEEESCCTTCC-HHHHHTTSTTTSCEEEEE--EECCSSSC--SCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred             CEEeCCCCcCC-HHHHHHHHhhhccccccc--cccccccc--cccceeEEEECCHHHHHHHHHHhCCCEECC
Confidence            79999999865 889999999999999998  55566676  899999999999999999999999999875

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=2.6e-15  Score=110.21  Aligned_cols=67  Identities=24%  Similarity=0.335  Sum_probs=60.6

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ||||||||...+ +.||+++|..+|.+..+.  ...++.||  .++|||||+|.+.+.|.++++ +||+.|.+
T Consensus         1 rlfV~nLp~~~t-e~~l~~~F~~~G~i~~~~--~~~~~~~~--~~~~~afV~F~~~~~a~~al~-~~~~~l~g   67 (75)
T d2msta_           1 KIFVGGLSVNTT-VEDVKHYFEQFGKVDDAM--LMFDKTTN--RHRGFGFVTFESEDIVEKVCE-IHFHEINN   67 (75)
T ss_dssp             CEEEECCCSSCC-HHHHHHHHHTTSCCSEEC--CBCCTTCT--TSCCEEEEECSCHHHHHHHHH-CSSCCBTT
T ss_pred             CEEEeCCCCCCC-HHHHHHHHHHhCCcceee--eeeecccc--ccCceeEEEECCHHHHHHHHh-cCCCEECC
Confidence            799999999865 889999999999999997  56666676  899999999999999999997 99999875

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.4e-14  Score=112.11  Aligned_cols=83  Identities=22%  Similarity=0.352  Sum_probs=69.3

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      .....+|||+|||...+ +.+|+++|..+|.|.+++  ...++++    +||||||+|.+.++|.++|+.|||..|.+  
T Consensus         8 ~~~~~~l~v~nLp~~~t-~~~L~~~F~~~G~v~~v~--~~~~~~~----~kg~afV~f~~~~~a~~Ai~~l~~~~~~g--   78 (93)
T d2cq3a1           8 KSTPKRLHVSNIPFRFR-DPDLRQMFGQFGKILDVE--IIFNERG----SKGFGFVTFENSADADRAREKLHGTVVEG--   78 (93)
T ss_dssp             SCCCCEEEEESCCTTCC-HHHHHHHGGGTSCEEEEE--EECCTTT----TCCEEEEEESCHHHHHHHHHHHTTCEETT--
T ss_pred             CCCCCEEEEECCCCCCC-HHHHHHHHhhcceeeecc--ccccccC----CcceeEEEECCHHHHHHHHHHcCCCEECC--
Confidence            34567899999999865 889999999999999998  4455434    59999999999999999999999999874  


Q ss_pred             eeceeeeeeecCCC
Q 013598          271 VQKQIRCEMVNSSS  284 (439)
Q Consensus       271 VEK~ikcE~~~~~S  284 (439)
                        +.|+|+.+.++.
T Consensus        79 --~~l~V~~A~~r~   90 (93)
T d2cq3a1          79 --RKIEVNNATARV   90 (93)
T ss_dssp             --EECEEEECCSSC
T ss_pred             --EEEEEEecCcCC
Confidence              567777776543

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1e-14  Score=113.65  Aligned_cols=82  Identities=28%  Similarity=0.458  Sum_probs=67.6

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ..+-+|||+|||..++ +.+|+.+|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+.  ++.|. |  
T Consensus         6 ~~~~~lfV~nLp~~~t-e~~l~~~F~~~G~i~~v~--i~~d~~tg--~srG~aFV~f~~~~~a~~al~~--~~~l~-G--   75 (90)
T d2cqga1           6 QKTSDLIVLGLPWKTT-EQDLKEYFSTFGEVLMVQ--VKKDLKTG--HSKGFGFVRFTEYETQVKVMSQ--RHMID-G--   75 (90)
T ss_dssp             CCCCCEEEESCCSSCC-HHHHHHHHGGGSCEEEEE--EEECSSSC--SEEEEEEEEESSHHHHHHHHHS--CEEET-T--
T ss_pred             cCCCeEEEECCCCCCC-HHHHHHHHHhhcccceee--eccCCCCc--ccCCEEEEEECCHHHHHHHHhc--CCccC-C--
Confidence            3557899999999876 889999999999999998  55667787  9999999999999999999984  44443 4  


Q ss_pred             eceeeeeeecCCC
Q 013598          272 QKQIRCEMVNSSS  284 (439)
Q Consensus       272 EK~ikcE~~~~~S  284 (439)
                       +.+.|..+.++.
T Consensus        76 -r~i~v~~a~~k~   87 (90)
T d2cqga1          76 -RWCDCKLPNSKQ   87 (90)
T ss_dssp             -EEEEEECCCTTC
T ss_pred             -EEeEEEeCCCCC
Confidence             467777776543

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5e-15  Score=113.60  Aligned_cols=79  Identities=19%  Similarity=0.311  Sum_probs=65.9

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK  273 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK  273 (439)
                      ..+|||+|||...+ +++|+++|..+|.|.++++  ..++.|    .||||||+|.+.++|.++|+.+||+.|.+    +
T Consensus         8 ~~~l~V~nLp~~~t-~~~l~~~F~~~G~v~~~~i--~~~~~~----~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~   76 (89)
T d1cvja2           8 VGNIFIKNLDKSID-NKALYDTFSAFGNILSCKV--VCDENG----SKGYGFVHFETQEAAERAIEKMNGMLLND----R   76 (89)
T ss_dssp             TTEEEEESCCSSCC-HHHHHHHHHTTSCEEEEEE--CCBTTB----CCSCEEEEESCHHHHHHHTTSSSEEEETT----E
T ss_pred             CCEEEEeCCCCCCC-HHHHHHHHHhcCCceEEEE--EeecCC----CcceeEEEECCHHHHHHHHHHcCCCEECC----E
Confidence            34799999999965 8899999999999999984  444434    49999999999999999999999999874    5


Q ss_pred             eeeeeeecCC
Q 013598          274 QIRCEMVNSS  283 (439)
Q Consensus       274 ~ikcE~~~~~  283 (439)
                      .|+++.+..+
T Consensus        77 ~i~V~~a~~~   86 (89)
T d1cvja2          77 KVFVGRFKSR   86 (89)
T ss_dssp             EEEEEECCCT
T ss_pred             EEEEEECCCC
Confidence            6777776543

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6e-15  Score=116.22  Aligned_cols=79  Identities=23%  Similarity=0.226  Sum_probs=65.5

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .+...+.+|||+|||....-+.||+.+|..+|.|++|++            .||||||+|.+.++|.++|+.+||+.|.+
T Consensus        10 ~~~~~~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i------------~rg~aFV~f~~~~~A~~Ai~~lng~~~~g   77 (98)
T d1wf2a_          10 DPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV------------HKGFAFVQYVNERNARAAVAGEDGRMIAG   77 (98)
T ss_dssp             CCSSCCCCEEEEEECTTTCCHHHHHHSSTTSSCEEEEEE------------ETEEEEEEESSHHHHHHHHHTTTTCEETT
T ss_pred             CCCCCCcEEEEeCCCcccCCHHHHHHHHhhcCCEEEEEE------------eCCeEEEEECCHHHHHHHHHHcCCCEECC
Confidence            445567789999997532226799999999999999973            48999999999999999999999999863


Q ss_pred             ceeeceeeeeeecCC
Q 013598          269 GKVQKQIRCEMVNSS  283 (439)
Q Consensus       269 gKVEK~ikcE~~~~~  283 (439)
                          +.|+|+++...
T Consensus        78 ----~~l~V~~a~~~   88 (98)
T d1wf2a_          78 ----QVLDINLAAEP   88 (98)
T ss_dssp             ----EECEEEETTSC
T ss_pred             ----EEEEEEECCCC
Confidence                56788887654

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2e-14  Score=112.12  Aligned_cols=83  Identities=20%  Similarity=0.322  Sum_probs=66.3

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      .+..+|||+|||..++ ++||+++|+.+| ++.+++... ...||  .+||||||+|.+.++|.+++ ++||+.|.+   
T Consensus        13 ~p~~~v~V~nLp~~~t-e~~l~~~f~~~g-~~~~~~~~~-~~~~g--~~~g~afV~f~~~e~a~~~~-~~~~~~~~g---   83 (104)
T d1wi8a_          13 SPPYTAFLGNLPYDVT-EESIKEFFRGLN-ISAVRLPRE-PSNPE--RLKGFGYAEFEDLDSLLSAL-SLNEESLGN---   83 (104)
T ss_dssp             SSCEEEEEESCCSSCC-HHHHHHHTTTSC-EEEEECCBC-SSCTT--SBCSCEEEEESSHHHHHHHH-GGGTCEETT---
T ss_pred             CCCCEEEEeCCCCcCC-HHHHHHHHHHhc-cccceeeee-eccCC--CcceeeeEEECCHHHHHHHH-HcCCCEECC---
Confidence            3568999999999876 889999999997 888874332 22354  89999999999999998777 599999874   


Q ss_pred             eceeeeeeecCCC
Q 013598          272 QKQIRCEMVNSSS  284 (439)
Q Consensus       272 EK~ikcE~~~~~S  284 (439)
                       +.|++..+....
T Consensus        84 -r~l~V~~a~~~~   95 (104)
T d1wi8a_          84 -KRIRVDVADQAQ   95 (104)
T ss_dssp             -EECEEEECCCCC
T ss_pred             -EEEEEEECCCCC
Confidence             567777766543

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.3e-15  Score=116.92  Aligned_cols=69  Identities=19%  Similarity=0.290  Sum_probs=61.9

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .-+|||+|||...+ +.+|+.+|..+|.|.+++  ...++.||  .+||||||+|.+.++|.++|+ +||+.|.+
T Consensus        18 ~~tifV~nL~~~~t-e~~l~~~F~~~G~V~~v~--i~~d~~tg--~~kG~afV~F~~~e~a~~A~~-l~g~~~~G   86 (101)
T d2cq4a1          18 ARTVFCMQLAARIR-PRDLEDFFSAVGKVRDVR--IISDRNSR--RSKGIAYVEFCEIQSVPLAIG-LTGQRLLG   86 (101)
T ss_dssp             HTEEEEESCCTTCC-HHHHHHHHTTTSCEEEEE--ECCSCCSS--SCCCCEEEEESCGGGHHHHHH-HTTEEETT
T ss_pred             CCEEEEECCCCCCC-HHHHHHHHcCCCeEEEEE--eeecCCCc--cccceEEEEECCHHHHHHHHH-HCCCEECC
Confidence            34799999999865 889999999999999998  55677787  999999999999999999996 99999875

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3e-15  Score=113.50  Aligned_cols=67  Identities=16%  Similarity=0.356  Sum_probs=59.9

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      +|||||||.+.+ +++|+++|..+|.|.+++  ...+++|+  .+||||||+|.+.++|.++|+. +++.|.+
T Consensus         1 klfVgnLp~~~t-e~~l~~~F~~~G~I~~v~--i~~d~~t~--~~rG~~FV~f~~~~~a~~al~~-~~~~i~g   67 (75)
T d1x0fa1           1 KIFVGGLSPDTP-EEKIREYFGGFGEVESIE--LPMDNKTN--KRRGFCFITFKEEEPVKKIMEK-KYHNVGL   67 (75)
T ss_dssp             EEEEESCCSSCC-HHHHHHHHHHHSCEEEEE--CCCCTTTC--CTTCCEEEEESSSHHHHHHTTC-SSCCBTT
T ss_pred             CEEEcCCCCCCC-HHHHHHHHHHhCCccccc--cccccccc--ccccEEEEEECCHHHHHHHHhh-CCCEECC
Confidence            699999999975 889999999999999998  56777787  8999999999999999999986 7777664

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=9.1e-15  Score=111.76  Aligned_cols=83  Identities=24%  Similarity=0.364  Sum_probs=64.9

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      ++-+|||+|||.+..-+.+|+++|+.+|.|.++++.. .++.||  .+||||||+|.+.++|.++|+ +||+.|.+    
T Consensus         3 e~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~-~~~~~~--~~kg~afV~f~~~~~a~~Al~-~n~~~~~g----   74 (86)
T d2ghpa3           3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPA-GQKEHS--FNNCCAFMVFENKDSAERALQ-MNRSLLGN----   74 (86)
T ss_dssp             TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCS-CCC-----CCCEEEEEEESSHHHHHHHGG-GTTEEETT----
T ss_pred             CCCEEEEECCCCCcccHHHHHHHHHhhhhccceeeec-ccCCcc--ccceeeeEEECCHHHHHHHHh-cCCCEECC----
Confidence            5779999999997531445999999999999998432 233455  899999999999999999996 99999863    


Q ss_pred             ceeeeeeecCC
Q 013598          273 KQIRCEMVNSS  283 (439)
Q Consensus       273 K~ikcE~~~~~  283 (439)
                      +.|++..++.+
T Consensus        75 r~l~V~~a~~k   85 (86)
T d2ghpa3          75 REISVSLADKK   85 (86)
T ss_dssp             EEEEEEECCCC
T ss_pred             EEEEEEEcCCC
Confidence            56777776644

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.5e-15  Score=115.48  Aligned_cols=85  Identities=21%  Similarity=0.192  Sum_probs=71.6

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      +.+++-+|||+|||...+ +.+|.++|..+|.|.+++  ...++.||  .+||||||.|.+.++|.++|+.|||..|. |
T Consensus        14 ~~~ps~tl~V~nLp~~~t-~~~l~~~f~~~G~v~~~~--~~~~~~~g--~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~-g   87 (102)
T d2cpxa1          14 PGEPNKVLYLKNLSPRVT-ERDLVSLFARFQEKKGPP--IQFRMMTG--RMRGQAFITFPNKEIAWQALHLVNGYKLY-G   87 (102)
T ss_dssp             CCSCCSEEEEECCCTTCC-HHHHHHHTHHHHHSSSSC--CEEEEECS--SSCSEEEEECSSHHHHHHHHHHSTTCBCS-S
T ss_pred             CCCCCCEEEEeCCCCCCC-HHHHHHHHhhccceeeEE--eecccccc--cccccceEEeccHHHHHHHHHHhCCCEEC-C
Confidence            344678999999999865 889999999999999887  44455576  88999999999999999999999999985 3


Q ss_pred             eeeceeeeeeecCC
Q 013598          270 KVQKQIRCEMVNSS  283 (439)
Q Consensus       270 KVEK~ikcE~~~~~  283 (439)
                         +.|+|+.+...
T Consensus        88 ---~~l~V~~ak~k   98 (102)
T d2cpxa1          88 ---KILVIEFGKNK   98 (102)
T ss_dssp             ---CBCEEEECCCC
T ss_pred             ---EEEEEEeCCCc
Confidence               67888887653

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.2e-14  Score=110.56  Aligned_cols=81  Identities=16%  Similarity=0.181  Sum_probs=65.4

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      .+-+|||+|||.+.+ ++||+++|+.+|- ..++        +  +.+||||||+|.+.++|.++|+.|||+.|.    -
T Consensus         4 ~s~~i~V~nLp~~~t-~~~l~~lF~~~G~-~~~~--------~--~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~----G   67 (88)
T d1wg1a_           4 GSSGILVKNLPQDSN-CQEVHDLLKDYDL-KYCY--------V--DRNKRTAFVTLLNGEQAQNAIQMFHQYSFR----G   67 (88)
T ss_dssp             CCCCEEEESCCSSCC-HHHHHHHTCSSCC-CCEE--------E--EGGGTEEEECCSCHHHHHHHHHHHTTEEET----T
T ss_pred             CCCEEEEeCCCCccC-hHHHHHHHHhcCc-eeee--------e--eccCCceEEEECCHHHHHHHHHHhCCCEEC----C
Confidence            456899999999865 8899999999992 1111        2  267999999999999999999999999987    5


Q ss_pred             ceeeeeeecCCCCCCCC
Q 013598          273 KQIRCEMVNSSSSNSVD  289 (439)
Q Consensus       273 K~ikcE~~~~~S~~~~~  289 (439)
                      +.|+|+.+...+...+.
T Consensus        68 ~~l~V~~a~~~~~~~~~   84 (88)
T d1wg1a_          68 KDLIVQLQPTDALLCSG   84 (88)
T ss_dssp             EEEEEEECCCCCCCSCC
T ss_pred             EEEEEEEcCCCCCCCCC
Confidence            68889988766555443

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=3.2e-14  Score=110.80  Aligned_cols=86  Identities=17%  Similarity=0.183  Sum_probs=72.3

Q ss_pred             CCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          187 EPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       187 ~~e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      +....++.-+|||+|||..++ +++|+++|..+|.|.++++  ..+        ||||||+|.+.++|.++|+.|||..|
T Consensus        10 g~g~~~Ps~tl~V~nLp~~~t-~~~l~~~f~~~G~i~~~~~--~~~--------~~~afV~f~~~~~A~~A~~~l~~~~i   78 (97)
T d1whya_          10 GYGKANPTTRLWVGGLGPNTS-LAALAREFDRFGSIRTIDH--VKG--------DSFAYIQYESLDAAQAACAKMRGFPL   78 (97)
T ss_dssp             CCCCCCCCSCEEEECCCSSCC-HHHHHHHHHTTSCEEEEEE--CSS--------SCCEEEEESSHHHHHHHHHHHTTCBC
T ss_pred             CCCCCCCCCEEEEcCCCCCCC-HHHHHHHHHhhcccceEee--ecc--------ccEEEeccCCHHHHHHHHHHhCCCEe
Confidence            444567788999999999865 8899999999999999973  222        89999999999999999999999998


Q ss_pred             ccceeeceeeeeeecCCCC
Q 013598          267 AFGKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       267 ~fgKVEK~ikcE~~~~~S~  285 (439)
                      .+.  .+.|+|+.+.+..+
T Consensus        79 ~g~--~~~l~v~~ak~~~~   95 (97)
T d1whya_          79 GGP--DRRLRVDFAKSGPS   95 (97)
T ss_dssp             SSS--SCBCEEEECCCCCC
T ss_pred             CCC--ceEEEEEeCCCCCC
Confidence            765  45788888875443

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.1e-14  Score=113.37  Aligned_cols=77  Identities=21%  Similarity=0.134  Sum_probs=65.0

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      .+-+|||+|||...+ ..+|+++|..+|.|.+|++..     |  +.+||||||+|.+.++|..+|+.|||+.|.+    
T Consensus         6 ~~r~l~V~nLp~~~t-e~~l~~~F~~~G~v~~i~~~~-----~--~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~g----   73 (114)
T d2f9da1           6 VNRILYIRNLPYKIT-AEEMYDIFGKYGPIRQIRVGN-----T--PETRGTAYVVYEDIFDAKNACDHLSGFNVCN----   73 (114)
T ss_dssp             CCSEEEEESCCTTCC-HHHHHHHHHTTSCEEEEEEEC-----S--TTTTTEEEEEESSHHHHHHHHHHHTTCEETT----
T ss_pred             CCCEEEEECCCCCCC-HHHHHHHHhhcCCeEeecccc-----c--CCcCCeEEEEECCHHHHHHHHHHhCCCEECC----
Confidence            355899999999865 889999999999999998532     3  3569999999999999999999999999874    


Q ss_pred             ceeeeeeec
Q 013598          273 KQIRCEMVN  281 (439)
Q Consensus       273 K~ikcE~~~  281 (439)
                      +.|+|+.+.
T Consensus        74 r~l~V~~a~   82 (114)
T d2f9da1          74 RYLVVLYYN   82 (114)
T ss_dssp             EECEEEECC
T ss_pred             EEEEEEEcC
Confidence            456676653

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.9e-14  Score=111.36  Aligned_cols=87  Identities=22%  Similarity=0.305  Sum_probs=69.9

Q ss_pred             cEEEEcCCCCCCchHHHHHHHhccCCC-eeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKGVPG-IINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK  273 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~vGg-visIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK  273 (439)
                      .||||||||...+ +.+|+.+|+.+|. |.+++  ...++++. +..||||||+|.+.++|.++|+.|++..+.++  .+
T Consensus         2 ~rLyV~nLp~~~t-e~~l~~~f~~~g~~i~~v~--~~~~~~~~-~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~--g~   75 (96)
T d2disa1           2 CRLFIGGIPKMKK-REEILEEIAKVTEGVLDVI--VYASAADK-MKNRGFAFVEYESHRAAAMARRKLMPGRIQLW--GH   75 (96)
T ss_dssp             EEEEEECCCTTSC-HHHHHHHHHHHSTTEEEEE--CCSSSCTT-TTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT--TB
T ss_pred             CEEEEcCCCCcCC-HHHHHHHHHHhCCcceEEE--Eeeecccc-ccCCCeEEEEEcCHHHHHHHHHHHcCCCeEEC--CE
Confidence            4899999999865 8899999999995 77887  44443321 47899999999999999999999998887764  46


Q ss_pred             eeeeeeecCCCCCC
Q 013598          274 QIRCEMVNSSSSNS  287 (439)
Q Consensus       274 ~ikcE~~~~~S~~~  287 (439)
                      +|+++.+.+....+
T Consensus        76 ~i~V~~A~p~~~~~   89 (96)
T d2disa1          76 QIAVDWAEPEIDVD   89 (96)
T ss_dssp             CCEEEESCSSCSTT
T ss_pred             EEEEEEcCCCCCCC
Confidence            89999886544433

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.3e-14  Score=119.65  Aligned_cols=121  Identities=16%  Similarity=0.217  Sum_probs=88.1

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhHHhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRD  211 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~~~n~~k~~~akk~~e~~~dgvRVrVGNLPkk~ni~kD  211 (439)
                      .++|||+++.+.+.+.++++++..+..-..     ......+..+...     ..........-+|||+|||...+ +.+
T Consensus        45 ~~~~g~afv~f~~~~~a~~a~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~~~~i~V~~lp~~~t-e~~  113 (183)
T d1u1qa_          45 KRSRGFGFVTYATVEEVDAAMNARPHKVDG-----RVVEPKRAVSRED-----SQRPGAHLTVKKIFVGGIKEDTE-EHH  113 (183)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHTCSCEETT-----EECEEEECCCTTG-----GGSTTTTCCCSEEEEECCCTTCC-HHH
T ss_pred             CCccCceecccCCHHHHHHHHHhcCCcccc-----cchhhhhhhhccc-----ccccccccccceeEEccCCCcCC-HHH
Confidence            388999999999999999998654432111     1111111111111     11222334556899999999865 889


Q ss_pred             HHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          212 LKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       212 L~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      |+.+|..+|.|..+.  +..++.||  ..||||||+|.+.++|.++|+ ++|+.|.+
T Consensus       114 L~~~f~~~G~v~~~~--i~~~~~~~--~~~g~~fV~f~~~e~A~~Al~-~~~~~~~G  165 (183)
T d1u1qa_         114 LRDYFEQYGKIEVIE--IMTDRGSG--KKRGFAFVTFDDHDSVDKIVI-QKYHTVNG  165 (183)
T ss_dssp             HHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESCHHHHHHHHT-SSCEEETT
T ss_pred             HhhhhccCCceeeee--eecccccC--ccceeEEEEECCHHHHHHHHH-hCCCeECC
Confidence            999999999999987  66666676  889999999999999999998 68888765

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=2.8e-14  Score=109.57  Aligned_cols=78  Identities=21%  Similarity=0.268  Sum_probs=66.9

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      ...+|||+|||...+ ++||+.+|..+|.|.+|++  ..+        ||||||+|.+.++|.++|+.|||..|.+    
T Consensus         7 ~~~~l~V~nLp~~~~-~~~l~~~F~~~G~i~~i~~--~~~--------k~~afV~f~~~~~A~~A~~~l~g~~i~g----   71 (86)
T d2cpja1           7 QRSRLFVGNLPPDIT-EEEMRKLFEKYGKAGEVFI--HKD--------KGFGFIRLETRTLAEIAKVELDNMPLRG----   71 (86)
T ss_dssp             CTTEEEEESCCTTCC-HHHHHHHTSTTCCCSEEEE--ETT--------TTEEEEECSSSHHHHHHHHHHTTCCBTT----
T ss_pred             CCCEEEEECCCCCCC-HHHHHHHHHHhCCceEeee--ecc--------cceEEEEECCHHHHHHHHHHhCCCEECC----
Confidence            346899999999865 8899999999999999983  333        8999999999999999999999999873    


Q ss_pred             ceeeeeeecCCCC
Q 013598          273 KQIRCEMVNSSSS  285 (439)
Q Consensus       273 K~ikcE~~~~~S~  285 (439)
                      +.++|+.+...++
T Consensus        72 ~~l~V~~A~~~~~   84 (86)
T d2cpja1          72 KQLRVRFACHSAS   84 (86)
T ss_dssp             BCCEEEESSCCSC
T ss_pred             EEEEEEECCCcCC
Confidence            6788888776553

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.9e-14  Score=114.69  Aligned_cols=80  Identities=13%  Similarity=0.139  Sum_probs=66.4

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      ..-+|||||||..++ +.||+++|..+|.|..+.+  ..++.|+  .+||||||+|.+.++|.++|+ +||+.|.+    
T Consensus        19 ~~~~lfVgnLp~~~t-e~~L~~~F~~~G~i~~~~i--~~d~~~~--~~kg~aFV~f~~~~~a~~al~-~~~~~l~G----   88 (103)
T d1x4ba1          19 QFRKLFIGGLSFETT-EESLRNYYEQWGKLTDCVV--MRDPASK--RSRGFGFVTFSSMAEVDAAMA-ARPHSIDG----   88 (103)
T ss_dssp             HHTEEEEECCTTCCC-HHHHHHHHTSSCCCSEEEE--ECCTTTS--SCCSEEEEECSSHHHHHHHHT-SCSEEETT----
T ss_pred             CCCEEEEeCCCCcCC-HHHHHHHHHhhCcccceee--cccccCC--CccCeEEEEECCHHHHHHHHH-hCCCeECC----
Confidence            346899999999875 8899999999999999984  4566675  889999999999999999997 69998863    


Q ss_pred             ceeeeeeecC
Q 013598          273 KQIRCEMVNS  282 (439)
Q Consensus       273 K~ikcE~~~~  282 (439)
                      +.|.|..+.+
T Consensus        89 ~~i~V~~a~~   98 (103)
T d1x4ba1          89 RVVEPKRAVA   98 (103)
T ss_dssp             EEEEEECCSS
T ss_pred             EEEEEEECcc
Confidence            3456665554

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.3e-14  Score=108.92  Aligned_cols=79  Identities=25%  Similarity=0.203  Sum_probs=65.8

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      .+..||||+|||...+ ++||+++|..+|.|..++..   .  +  +.+||||||+|.+.++|.++|+.|||+.|.+   
T Consensus        12 ~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~v~~~~~~---~--~--~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g---   80 (95)
T d1x4aa1          12 NNDCRIYVGNLPPDIR-TKDIEDVFYKYGAIRDIDLK---N--R--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG---   80 (95)
T ss_dssp             CCSSEEEEESCCTTCC-HHHHHHHHGGGSCEEEEEEC---C--S--SSSSCCEEEEESCHHHHHHHHHHHTTCEETT---
T ss_pred             CCCCEEEEECCCCCCC-HHHHHHHHhcCCceEEEEec---c--c--ccccceEEEEECCHHHHHHHHHHhCCCEECC---
Confidence            3456899999999865 88999999999999988732   1  2  2569999999999999999999999999874   


Q ss_pred             eceeeeeeecC
Q 013598          272 QKQIRCEMVNS  282 (439)
Q Consensus       272 EK~ikcE~~~~  282 (439)
                       +.|+|+.+..
T Consensus        81 -~~l~V~~a~~   90 (95)
T d1x4aa1          81 -YRLRVEFPRS   90 (95)
T ss_dssp             -EECEEECCCC
T ss_pred             -EEEEEEeccC
Confidence             5677777654

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=5.9e-14  Score=109.35  Aligned_cols=77  Identities=13%  Similarity=0.075  Sum_probs=64.3

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      .+.+|||+|||...+ +.+|+.+|..+|.|.+|.+.     +.     ||||||+|.+.++|.++|+.|||..|.+    
T Consensus         9 ~~~~l~V~nLp~~~t-~~~L~~~F~~fG~I~~v~l~-----~~-----kg~afV~f~~~~~A~~A~~~lng~~~~g----   73 (111)
T d1whxa_           9 SKTVILAKNLPAGTL-AAEIQETFSRFGSLGRVLLP-----EG-----GITAIVEFLEPLEARKAFRHLAYSKFHH----   73 (111)
T ss_dssp             EEEEEEEESCCTTCC-HHHHHHHHHTTSCEEEEECC-----SS-----SSCEEEEESCHHHHHHHHHHHTTCBSSS----
T ss_pred             CCCEEEEECCCCCCC-HHHHHhhhhccCCccEEEee-----cc-----CceEEEEEcCHHHHHHHHHHHcCCccCC----
Confidence            346899999999865 88999999999999999852     12     8999999999999999999999999874    


Q ss_pred             ceeeeeeecCCC
Q 013598          273 KQIRCEMVNSSS  284 (439)
Q Consensus       273 K~ikcE~~~~~S  284 (439)
                      +.|.|+.+....
T Consensus        74 r~l~v~~a~~~~   85 (111)
T d1whxa_          74 VPLYLEWAPIGV   85 (111)
T ss_dssp             SBCEEEEEETTT
T ss_pred             CeEEEEECCCCc
Confidence            456666665443

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5e-14  Score=110.31  Aligned_cols=78  Identities=18%  Similarity=0.298  Sum_probs=66.9

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      +...+|||+|||...+ +.+|+.+|..+|.|.+|++.  .+        ||||||+|.+.++|.++|+.+||+.|.    
T Consensus        16 ~~~~~l~v~nL~~~~t-e~~L~~~F~~fG~i~~v~i~--~~--------kg~afV~f~~~~~A~~Ai~~l~~~~i~----   80 (96)
T d1x4ga1          16 PKNCTVYCGGIASGLT-DQLMRQTFSPFGQIMEIRVF--PE--------KGYSFVRFSTHESAAHAIVSVNGTTIE----   80 (96)
T ss_dssp             SSCCEEEEECCSSCCC-HHHHHHHHHHHSCEEEEEEE--TT--------TTEEEEEESSHHHHHHHHHHHTTCEET----
T ss_pred             CCCCEEEEcCCCCCCC-HHHHHHHHHHhCCceEEEEE--ec--------ceEEEEEECCHHHHHHHHHHhCCCEEC----
Confidence            4567899999999865 88999999999999999843  33        899999999999999999999999987    


Q ss_pred             eceeeeeeecCCC
Q 013598          272 QKQIRCEMVNSSS  284 (439)
Q Consensus       272 EK~ikcE~~~~~S  284 (439)
                      -+.++|+.+...+
T Consensus        81 g~~l~v~~ak~~p   93 (96)
T d1x4ga1          81 GHVVKCYWGKESP   93 (96)
T ss_dssp             TEECEEECCCCCC
T ss_pred             CEEEEEEEcCCCC
Confidence            3678888876543

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.47  E-value=1.2e-13  Score=104.61  Aligned_cols=79  Identities=22%  Similarity=0.307  Sum_probs=66.1

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...|++-+|||+|||...+ +.+|..+|..+|+|.+++.  ..++       ||||||.|.+.++|.++++.|||..|..
T Consensus         3 ~~~pP~~tl~V~nLp~~~t-~~~l~~~f~~~G~i~~v~~--~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~~   72 (83)
T d2b0ga1           3 TEQPPNQILFLTNLPEETN-EMMLSMLFNQFPGFKEVRL--VPNR-------HDIAFVEFTTELQSNAAKEALQGFKITP   72 (83)
T ss_dssp             CCCSCCSEEEEESCCTTCC-HHHHHHHHTTSTTEEEEEE--CTTT-------CSCEEEEESSHHHHHHHHHHHTTCBSST
T ss_pred             CCCCCCCEEEEECCCCCCC-HHHHHhhhccCccEEEeee--eccc-------ceeEEEecCCHHHHHHHHHHhCCcEeCC
Confidence            3456788999999999865 8899999999999999984  3221       7999999999999999999999999865


Q ss_pred             ceeeceeeeeee
Q 013598          269 GKVQKQIRCEMV  280 (439)
Q Consensus       269 gKVEK~ikcE~~  280 (439)
                      |   ++|+++.+
T Consensus        73 ~---~~i~v~~a   81 (83)
T d2b0ga1          73 T---HAMKITFA   81 (83)
T ss_dssp             T---CBCEEEEC
T ss_pred             C---cEEEEEEe
Confidence            5   35666654

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.7e-14  Score=107.47  Aligned_cols=62  Identities=19%  Similarity=0.195  Sum_probs=55.7

Q ss_pred             cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .||||+|||..++ ++||+++|..+|.|+++++.           .+|||||+|.+.++|.++|+.|||..|.+
T Consensus         1 nrvfV~nlp~~~~-~~~l~~~F~~~G~v~~~~i~-----------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g   62 (87)
T d3begb1           1 NRVVVSGLPPSGS-WQDLKDHMREAGDVCYADVY-----------RDGTGVVEFVRKEDMTYAVRKLDNTKFRS   62 (87)
T ss_dssp             CCEEEEECCSSCC-TTHHHHHHGGGSCEEEEEEC-----------TTSEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred             CeEEEECCCCcCC-HHHHHHHHhhhccccccccc-----------ccceeeEEeCCHHHHHHHHHHhCCCEECC
Confidence            4799999999865 88999999999999999731           25999999999999999999999999885

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=4.9e-14  Score=106.55  Aligned_cols=72  Identities=24%  Similarity=0.244  Sum_probs=59.8

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      |...+|||+|||...+ ++||+++|+.+|.+....  ....++||  .+||||||.|.+.++|.++|+++||+.+.+
T Consensus         7 p~~~~l~v~nLp~~~~-~~di~~~F~~~~~~~~~~--~~~~~~~g--~~~G~afV~f~~~e~a~~Ai~~l~~~~l~g   78 (86)
T d2cqpa1           7 PGPTIIKVQNMPFTVS-IDEILDFFYGYQVIPGSV--CLKYNEKG--MPTGEAMVAFESRDEATAAVIDLNDRPIGS   78 (86)
T ss_dssp             CSSEEEEEESCCTTCC-HHHHHHHTTTSCCCTTTC--EEEECSSS--CEEEEEEEEESCHHHHHHHHHHTTTCEETT
T ss_pred             CCCCEEEEECCCCCCC-HHHHHHHHhhcccceeEE--EEEeCCCC--CcceEEEEEEcCcHHHHHHHHHcCCCEECC
Confidence            4456799999999876 889999999999975522  12233464  899999999999999999999999999975

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.47  E-value=1.3e-14  Score=112.75  Aligned_cols=80  Identities=19%  Similarity=0.230  Sum_probs=66.4

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ...-+|||+|||...+ +.+|+.+|+.+|.|.++++   .+++||  .+||||||+|.+.++|.++|+ +||+.|.+   
T Consensus        11 ~~~~~ifV~nL~~~~t-e~~l~~~F~~~G~i~~~~v---~~~~~g--~~kg~afv~F~~~e~a~~Al~-~~g~~~~g---   80 (91)
T d1fjeb1          11 TTPFNLFIGNLNPNKS-VAELKVAISELFAKNDLAV---VDVRTG--TNRKFGYVDFESAEDLEKALE-LTGLKVFG---   80 (91)
T ss_dssp             SSSEEEEEECCCTTSC-HHHHHHHHHHHHHHHTCCC---CEEEEE--TTTTEEEEEESSHHHHHHHHH-GGGEEETT---
T ss_pred             CCCcEEEEeCccCcch-HHHHHHHHhcCCcEEEeee---eecCCC--CccEEeEEeeCCHHHHHHHHh-cCCcEECC---
Confidence            3566999999999865 8899999999999988863   345575  899999999999999999997 89999884   


Q ss_pred             eceeeeeeecC
Q 013598          272 QKQIRCEMVNS  282 (439)
Q Consensus       272 EK~ikcE~~~~  282 (439)
                       +.|+++.+.+
T Consensus        81 -~~i~V~~ak~   90 (91)
T d1fjeb1          81 -NEIKLEKPKG   90 (91)
T ss_dssp             -EEEEEECCCC
T ss_pred             -EEEEEEecCC
Confidence             4566665543

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.5e-14  Score=109.97  Aligned_cols=80  Identities=15%  Similarity=0.079  Sum_probs=63.6

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      ....||||+|||...+ +.+|+++|..+|.|.++....  +      .+||||||+|.+.++|.++|+.+||+.|..+  
T Consensus         5 s~~~~v~V~NL~~~vt-e~~L~~~F~~~G~i~~~~i~~--~------~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~--   73 (108)
T d2adba1           5 SPVLRIIVENLFYPVT-LDVLHQIFSKFGTVLKIITFT--K------NNQFQALLQYADPVSAQHAKLSLDGQNIYNA--   73 (108)
T ss_dssp             CCEEEEESCSCCSTTH-HHHHHHHHTTTSCEEEEEEEE--E------TTEEEEEEEESCHHHHHHHHHHHHSCCSSTT--
T ss_pred             CCeEEEEEeCcCCCCC-HHHHHHHHccCCcEEEEEEEe--e------CCCCeEEEEECCHHHHHHHHHHHCCCEeccC--
Confidence            3567899999999854 889999999999999987432  2      2489999999999999999999999998653  


Q ss_pred             eceeeeeeecC
Q 013598          272 QKQIRCEMVNS  282 (439)
Q Consensus       272 EK~ikcE~~~~  282 (439)
                      .+.+++.....
T Consensus        74 ~~~l~v~~s~~   84 (108)
T d2adba1          74 CCTLRIDFSKL   84 (108)
T ss_dssp             CCCCEEEECSS
T ss_pred             CcEEEEEecCC
Confidence            23444444433

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.1e-14  Score=107.41  Aligned_cols=67  Identities=25%  Similarity=0.267  Sum_probs=58.8

Q ss_pred             cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      -+|||+|||.+.+ +.||+++|+.+|.|.+|++..  + +||  .+||||||+|.+.++|.++|+ ++|..|.+
T Consensus         7 rtvfV~nlp~~~t-e~~l~~~F~~~G~v~~v~l~~--~-~~~--~~kG~afV~f~~~e~a~~al~-~~~~~~~g   73 (85)
T d1zh5a2           7 RSVYIKGFPTDAT-LDDIKEWLEDKGQVLNIQMRR--T-LHK--AFKGSIFVVFDSIESAKKFVE-TPGQKYKE   73 (85)
T ss_dssp             TEEEEECCCTTCC-HHHHHHHHTTSCCEEEEEEEE--C-TTC--CEEEEEEEEESCHHHHHHHHT-CCCCEETT
T ss_pred             CEEEEECCCCCCC-HHHHHHHHHHhcccccceeee--e-ccC--CcceEEEEEEcCHHHHHHHHH-HCCCEECC
Confidence            4899999999975 889999999999999998533  3 365  899999999999999999997 69999875

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.3e-13  Score=108.55  Aligned_cols=79  Identities=13%  Similarity=0.148  Sum_probs=65.5

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ......+|||+|||...+ +.||+++|..+|.|.++.+.           .+|||||+|.+.++|.++|++|||..|.+ 
T Consensus        11 ~~~~~~~i~V~Nlp~~~~-~~~L~~~F~~~G~v~~~~i~-----------~~g~afV~f~~~~~a~~Ai~~lng~~~~g-   77 (98)
T d1wg4a_          11 TRRSDFRVLVSGLPPSGS-WQDLKDHMREAGDVCYADVQ-----------KDGMGMVEYLRKEDMEYALRKLDDTKFRS-   77 (98)
T ss_dssp             CCSCSCEEEEECCCSSCC-HHHHHHHHTTSSCEEEEEEE-----------TTTEEEEEESSHHHHHHHHHHHSSEEEEC-
T ss_pred             CCCCCCEEEEECCCCCCC-HHHHHHHHHhhccccccccc-----------ccceEEEEECCHHHHHHHHHHhCCCEeCC-
Confidence            334567899999999865 88999999999999998731           27999999999999999999999999884 


Q ss_pred             eeeceeeeeeecCCC
Q 013598          270 KVQKQIRCEMVNSSS  284 (439)
Q Consensus       270 KVEK~ikcE~~~~~S  284 (439)
                         +.|+|..+..+.
T Consensus        78 ---~~i~v~~~~~~~   89 (98)
T d1wg4a_          78 ---HEGETSYIRVYP   89 (98)
T ss_dssp             ---TTSCEEEEEEEC
T ss_pred             ---eEEEEEEEecCC
Confidence               456666665544

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=9.6e-14  Score=108.93  Aligned_cols=85  Identities=13%  Similarity=0.171  Sum_probs=68.0

Q ss_pred             CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ..+.+.+|||+|||.+++ ++||+++|..+| +++|...  .+. +|  .|||||||.|.+.++|.++++ +||+.|.  
T Consensus        11 ~~~~~~~v~v~nLp~~~t-e~dl~~~F~~~~-~~~v~~~--~~~-~g--~~~G~afVeF~~~~~a~~Al~-~~~~~i~--   80 (102)
T d1weza_          11 QSTTGHCVHMRGLPYRAT-ENDIYNFFSPLN-PMRVHIE--IGP-DG--RVTGEADVEFATHEDAVAAMA-KDKANMQ--   80 (102)
T ss_dssp             CCSSSCEEEEESCCTTCC-HHHHHHSSCSCC-CSEEEEE--ESS-SS--CEEEEEEEECSSSHHHHHHHT-TSSCCSS--
T ss_pred             cCCCCCEEEEeCCCCcCC-HHHHHHHHhccC-cceeeeE--Eec-CC--cceEEEEEEECCHHHHHHHHH-cCCCEEC--
Confidence            456788999999999876 889999999986 6777633  333 33  899999999999999999997 7999987  


Q ss_pred             eeeceeeeeeecCCCCC
Q 013598          270 KVQKQIRCEMVNSSSSN  286 (439)
Q Consensus       270 KVEK~ikcE~~~~~S~~  286 (439)
                        -+.|++.........
T Consensus        81 --gR~I~V~~s~~~~~~   95 (102)
T d1weza_          81 --HRYVELFLNSTAGTS   95 (102)
T ss_dssp             --SSCCEEEEECCCCCC
T ss_pred             --CEEEEEEEcCCCCCC
Confidence              456777776655433

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-13  Score=104.77  Aligned_cols=79  Identities=16%  Similarity=0.254  Sum_probs=65.4

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      -|++-+|||+|||...+ +.+|+++|..+|++++++.  .    +  +..||||||.|.+.++|.+++..|||+.|..| 
T Consensus         7 ~pPs~tL~V~NLp~~~t-e~~l~~~F~~~G~v~~~~~--~----~--~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g-   76 (88)
T d2adca2           7 FPPSATLHLSNIPPSVS-EEDLKVLFSSNGGVVKGFK--F----F--QKDRKMALIQMGSVEEAVQALIDLHNHDLGEN-   76 (88)
T ss_dssp             CCSCSEEEEECCCTTCC-HHHHHHHHHTTSCCEEEEE--E----C--SSSTTCEEEEESSHHHHHHHHHHHTTCBSSSS-
T ss_pred             CCCCCEEEEECCCCCCC-HHHHHHHhhccCCEEEEEE--e----e--ecccceeEEEECCHHHHHHHHHhccCCEecCC-
Confidence            36778999999999965 8899999999999988762  1    1  13489999999999999999999999998755 


Q ss_pred             eeceeeeeeec
Q 013598          271 VQKQIRCEMVN  281 (439)
Q Consensus       271 VEK~ikcE~~~  281 (439)
                        ++|+++.+.
T Consensus        77 --~~l~v~~sk   85 (88)
T d2adca2          77 --HHLRVSFSK   85 (88)
T ss_dssp             --CBCEEEECS
T ss_pred             --CEEEEEeCC
Confidence              567776543

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.2e-13  Score=106.93  Aligned_cols=81  Identities=21%  Similarity=0.209  Sum_probs=64.9

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      +.-.|||+|||..++ +.||+++|..+|.++...  ...+++|+  .+||||||.|.+.++|.++++ +||+.|.+    
T Consensus        14 ~~~~v~v~nLP~~~t-e~dI~~~F~~~g~v~~~v--~~~~~~~~--~~kG~afV~F~~~e~a~~a~~-~~~~~i~g----   83 (104)
T d1wg5a_          14 NDGFVRLRGLPFGCS-KEEIVQFFSGLEIVPNGM--TLPVDFQG--RSTGEAFVQFASQEIAEKALK-KHKERIGH----   83 (104)
T ss_dssp             CCCEEEEESCCTTCC-HHHHHHHTTTCCEEEEEE--ECCBCSSS--CBCSEEEEEESSHHHHHHHHT-TTTCCSSS----
T ss_pred             CCcEEEEeCCCCCCC-HHHHHHHHHhcCCceEEE--EEEeCCCC--CcceEEEEEeCCHHHHHHHHh-hCCCEEcc----
Confidence            444699999999976 889999999999887754  44455565  899999999999999999997 89998763    


Q ss_pred             ceeeeeeecCC
Q 013598          273 KQIRCEMVNSS  283 (439)
Q Consensus       273 K~ikcE~~~~~  283 (439)
                      +.|++..+...
T Consensus        84 R~i~V~~~~~~   94 (104)
T d1wg5a_          84 RYIEIFKSSRA   94 (104)
T ss_dssp             SCCEEEEECTT
T ss_pred             eEEEEEECCHH
Confidence            45566555543

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.4e-13  Score=107.14  Aligned_cols=76  Identities=17%  Similarity=0.117  Sum_probs=63.2

Q ss_pred             ccEEEEcCCCC-CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          194 GIRVRLLNLPK-KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       194 gvRVrVGNLPk-k~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      +.+|||+|||. .++ +++|..+|..+|.|.+|+  ...++       ||||||.|.+.++|.++|+.+||..|.+    
T Consensus         2 ~~~l~V~nL~p~~~t-e~~L~~~F~~fG~I~~v~--i~~~~-------kg~afV~f~~~~~A~~ai~~lng~~l~g----   67 (109)
T d2adca1           2 NSVLLVSNLNPERVT-PQSLFILFGVYGDVQRVK--ILFNK-------KENALVQMADGNQAQLAMSHLNGHKLHG----   67 (109)
T ss_dssp             CSEEEEESCCTTTCC-HHHHHHHHHHHTCEEEEE--ECCTT-------SCCEEEEESCHHHHHHHHHHHTTCBCSS----
T ss_pred             CCEEEEeCCCcccCC-HHHHHHHHhhccccceEE--EEecc-------cceEEEEECCHHHHHHHHHHhCCCEECC----
Confidence            46899999954 443 789999999999999998  44442       8999999999999999999999999874    


Q ss_pred             ceeeeeeecCC
Q 013598          273 KQIRCEMVNSS  283 (439)
Q Consensus       273 K~ikcE~~~~~  283 (439)
                      +.|+|+.+...
T Consensus        68 ~~l~v~~s~~~   78 (109)
T d2adca1          68 KPIRITLSKHQ   78 (109)
T ss_dssp             SBCEEECCSCC
T ss_pred             EEEEEEECCCC
Confidence            56777776543

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.2e-14  Score=106.47  Aligned_cols=74  Identities=22%  Similarity=0.311  Sum_probs=60.6

Q ss_pred             cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCc-eeccceeec
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQ-IIAFGKVQK  273 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq-~~~fgKVEK  273 (439)
                      .+|||||||...+ +.||+.+|..+|.+++++.  .        ..||||||+|.+.++|.++|+.|||+ .|. |   +
T Consensus         2 n~l~V~nLp~~~t-e~~L~~~F~~~G~i~~~~~--~--------~~rg~aFV~f~~~~~A~~Ai~~lng~~~~~-G---~   66 (80)
T d2cqha1           2 NKLYIGNLSPAVT-ADDLRQLFGDRKLPLAGQV--L--------LKSGYAFVDYPDQNWAIRAIETLSGKVELH-G---K   66 (80)
T ss_dssp             CCEEEECCCTTCC-HHHHHHHHHHTTCCCSSCE--E--------EETTEEEECCSCHHHHHHHHHHHTTTCEET-T---E
T ss_pred             CEEEEECCCCCCC-HHHHHHHHHHhCcEEEeEE--e--------cccceEEEEECCHHHHHHHHHHhCCCeEEC-C---E
Confidence            3799999999865 8899999999998876641  1        34899999999999999999999997 455 3   5


Q ss_pred             eeeeeeecCC
Q 013598          274 QIRCEMVNSS  283 (439)
Q Consensus       274 ~ikcE~~~~~  283 (439)
                      +|+++.+.++
T Consensus        67 ~i~V~~a~~k   76 (80)
T d2cqha1          67 IMEVDYSVSK   76 (80)
T ss_dssp             ECEEEECCCC
T ss_pred             EEEEEEcCCc
Confidence            6777776653

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=7.3e-14  Score=107.78  Aligned_cols=73  Identities=12%  Similarity=0.124  Sum_probs=60.2

Q ss_pred             CccEEEEcCCCCCCchHHHH---HHHhccCCCeeEEeeccccCCCCCCC-cccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          193 SGIRVRLLNLPKKKNIHRDL---KSAFKGVPGIINIIPVVSGNKKTKDP-ICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL---~~aFk~vGgvisIkpAv~~nrKTgDp-~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...+|||+|||...+ +.||   .++|..+|.|.+|.+  ..++.|+.. ..+|||||+|.+.++|.++|+.+||..|.+
T Consensus         7 q~n~vyV~nLp~~~t-~~~l~~~~e~F~~~G~I~~v~i--~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~g   83 (89)
T d2cpia1           7 QKNLVFVVGLSQRLA-DPEVLKRPEYFGKFGKIHKVVI--NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG   83 (89)
T ss_dssp             CSSCEEEEEECTTTC-CHHHHHSTTTTTTTSCEEEEEE--ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred             ecCEEEEECCCCccC-HHHHHHHHHHhcccCCceEEEE--eeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECC
Confidence            445799999999865 7788   778999999999984  455555422 345999999999999999999999999864

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.44  E-value=8.8e-14  Score=107.85  Aligned_cols=80  Identities=18%  Similarity=0.204  Sum_probs=68.1

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      .++-+|||+|||..++ ++||+.+|..+|.|..++       .||  ..||||||+|.+.++|.++|+.|||+.|.    
T Consensus        14 ~~~~~l~V~nL~~~~t-e~~l~~~F~~~g~v~~~~-------~~~--~~~~~afV~f~~~~~A~~A~~~l~~~~~~----   79 (96)
T d1fjca_          14 RAARTLLAKNLSFNIT-EDELKEVFEDALEIRLVS-------QDG--KSKGIAYIEFKSEADAEKNLEEKQGAEID----   79 (96)
T ss_dssp             TGGGEEEEESCCSSCC-HHHHHHHHCSEEEECCEE-------ETT--EEEEEEEEEESSHHHHHHHHHHTTEEEET----
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHHhcccceeee-------ecC--ccccEEEEEeCCHHHHHHHHHHcCCCEEC----
Confidence            3567999999999865 889999999999876664       243  67999999999999999999999999987    


Q ss_pred             eceeeeeeecCCCC
Q 013598          272 QKQIRCEMVNSSSS  285 (439)
Q Consensus       272 EK~ikcE~~~~~S~  285 (439)
                      .+.|+|+.+..+.+
T Consensus        80 gr~i~V~~a~~k~~   93 (96)
T d1fjca_          80 GRSVSLYYTGEKGG   93 (96)
T ss_dssp             TEEEEEEECSSSCC
T ss_pred             CEEEEEEEeCCCCC
Confidence            46888888877654

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.4e-13  Score=105.51  Aligned_cols=78  Identities=15%  Similarity=0.224  Sum_probs=63.7

Q ss_pred             CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 013598          192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV  271 (439)
Q Consensus       192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKV  271 (439)
                      +.+-+|||+|||...+ +.||+++|..+|.|++++.  .     +  .+||||||+|.+.++|.++|.  ||+.|.+   
T Consensus         3 ~~s~~lfV~nLp~~~t-e~~L~~~F~~~G~v~~v~~--~-----~--~~~gfafV~f~~~~~a~~a~~--~~~~i~g---   67 (88)
T d1wf0a_           3 SGSSGVFVGRCTGDMT-EDELREFFSQYGDVMDVFI--P-----K--PFRAFAFVTFADDQIAQSLCG--EDLIIKG---   67 (88)
T ss_dssp             SCCCEEEEESCCSSSC-HHHHHHHSTTTSCCCEEEC--C-----S--SCCSCCEEECSCHHHHHHTTT--CEEEETT---
T ss_pred             CCCCEEEEeCCCCCCC-HHHHHHHHHHcCCceEEEE--e-----e--ccCceEEEEECCHHHHHHHHh--CCCEECC---
Confidence            4567999999999865 8899999999999999962  1     1  358999999999999999996  8887663   


Q ss_pred             eceeeeeeecCCCC
Q 013598          272 QKQIRCEMVNSSSS  285 (439)
Q Consensus       272 EK~ikcE~~~~~S~  285 (439)
                       +.|+|..+..+..
T Consensus        68 -~~l~v~~a~~k~~   80 (88)
T d1wf0a_          68 -ISVHISNAEPKHN   80 (88)
T ss_dssp             -EEEEEECCCCCCC
T ss_pred             -EEeEEEeCCCCCC
Confidence             5677887765443

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.1e-13  Score=106.38  Aligned_cols=79  Identities=22%  Similarity=0.291  Sum_probs=64.7

Q ss_pred             ccEEEEcCCCCCCchHHHH----HHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          194 GIRVRLLNLPKKKNIHRDL----KSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL----~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      .-+|||+|||...+ ..||    ..+|..+|.|.+|+..     +|+  .+||||||+|.+.++|.++++.+||..|.  
T Consensus         3 ~~tl~V~nLp~~~t-~~dl~~~l~~~f~~~G~i~~i~~~-----~~~--~~~g~afV~F~~~~~A~~A~~~~~~~~~~--   72 (91)
T d1nu4a_           3 NHTIYINNLNEKIK-KDELKKSLHAIFSRFGQILDILVS-----RSL--KMRGQAFVIFKEVSSATNALRSMQGFPFY--   72 (91)
T ss_dssp             CSEEEEESCCTTSC-HHHHHHHHHHHHGGGSCEEEEECC-----HHH--HHTTCEEEEESSHHHHHHHHHHHTTCEET--
T ss_pred             CCEEEEeCCCCCCC-HHHHHHHHHHHhcccccccceEEe-----eec--cCCCceEEEECCHHHHHHHHHHhCCCEEC--
Confidence            46899999999865 5555    4578999999999743     243  67999999999999999999999999987  


Q ss_pred             eeeceeeeeeecCCC
Q 013598          270 KVQKQIRCEMVNSSS  284 (439)
Q Consensus       270 KVEK~ikcE~~~~~S  284 (439)
                        .+.++|+.+...+
T Consensus        73 --g~~l~v~~ak~~~   85 (91)
T d1nu4a_          73 --DKPMRIQYAKTDS   85 (91)
T ss_dssp             --TEECEEEECSSCC
T ss_pred             --CEEEEEEEeCCCc
Confidence              3678888776544

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.9e-13  Score=101.26  Aligned_cols=74  Identities=14%  Similarity=0.197  Sum_probs=61.8

Q ss_pred             cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeece
Q 013598          195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQ  274 (439)
Q Consensus       195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~  274 (439)
                      -+|||+|||...+ +.||..+|..+|.+..++.        +  ..||||||+|.+.++|.++|+.+||+.|.    .+.
T Consensus         9 k~l~V~nLp~~~t-e~~l~~~F~~~g~i~~~~~--------~--~~rg~afV~f~~~~~A~~Ai~~l~~~~i~----g~~   73 (86)
T d2cpda1           9 KILYVRNLMLSTS-EEMIEKEFNNIKPGAVERV--------K--KIRDYAFVHFSNREDAVEAMKALNGKVLD----GSP   73 (86)
T ss_dssp             CEEEEESCCTTCC-HHHHHHHHHTTSTTCEEEE--------E--ECSSEEEEEESSHHHHHHHHHHHSSEEET----TEE
T ss_pred             CEEEEcCCCCCCC-HHHHHHhhcccceeeeEEE--------c--cccEEEEEEeCCHHHHHHHHHHcCCCEEC----CEE
Confidence            4799999999865 8899999999998766652        1  45899999999999999999999999987    356


Q ss_pred             eeeeeecCC
Q 013598          275 IRCEMVNSS  283 (439)
Q Consensus       275 ikcE~~~~~  283 (439)
                      |+|+.+.+.
T Consensus        74 i~V~~akP~   82 (86)
T d2cpda1          74 IEVTLAKPV   82 (86)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEeccCC
Confidence            777776543

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=3.6e-13  Score=101.17  Aligned_cols=72  Identities=13%  Similarity=0.285  Sum_probs=60.0

Q ss_pred             EEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceee
Q 013598          197 VRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIR  276 (439)
Q Consensus       197 VrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK~ik  276 (439)
                      |||+|||.+.+ ++||+++|+.+| +..++        ++  ..||||||+|.+.++|.++|+.+||..+.    .++|+
T Consensus         1 i~V~nLp~~~t-~~~l~~~F~~~g-~~~~~--------~~--~~~g~afv~f~~~~~A~~Ai~~ln~~~~~----g~~l~   64 (75)
T d1wi6a1           1 ILIRGLPGDVT-NQEVHDLLSDYE-LKYCF--------VD--KYKGTAFVTLLNGEQAEAAINTFHQSRLR----ERELS   64 (75)
T ss_dssp             EEEECCCTTCC-HHHHHHHTTTSC-EEEEE--------EE--TTTTEEEEEESSHHHHHHHHHHHTTEESS----SCEEE
T ss_pred             CEEeCCCCcCC-HHHHHHHHhccc-cccee--------ec--ccceeEEEEECCHHHHHHHHHHhCCccCC----CCEEE
Confidence            79999999865 899999999998 44443        11  45899999999999999999999999987    46788


Q ss_pred             eeeecCCC
Q 013598          277 CEMVNSSS  284 (439)
Q Consensus       277 cE~~~~~S  284 (439)
                      |+.+...+
T Consensus        65 V~~a~~d~   72 (75)
T d1wi6a1          65 VQLQPTDA   72 (75)
T ss_dssp             EEECCSTT
T ss_pred             EEEeCCCC
Confidence            88886544

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.1e-13  Score=106.35  Aligned_cols=74  Identities=19%  Similarity=0.208  Sum_probs=60.3

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ++.....+|||+|||...+ ..||+.+|..+|.+..+.  ......||  .|||||||.|.+.++|.++|+ +||+.|++
T Consensus         3 dv~~~~~~v~v~nLp~~~t-~~~l~~~F~~~g~i~~~~--~~~~~~~g--~~~G~afV~F~s~~~a~~Al~-~n~~~i~g   76 (103)
T d2cpya1           3 DVNSAKVCAHITNIPFSIT-KMDVLQFLEGIPVDENAV--HVLVDNNG--QGLGQALVQFKNEDDARKSER-LHRKKLNG   76 (103)
T ss_dssp             SCCSCCCEEEEESCCTTSC-HHHHHHHTTTSCCCSTTE--EECCCTTS--SCSSCEEEECSSHHHHHHHGG-GCSEEETT
T ss_pred             CCCCCceEEEEeCCCCCCC-HHHHhhhhcccceEEEEE--EEEeCCCC--CcCccEEEEECCHHHHHHHHh-cCCCeECC
Confidence            3455668899999999975 889999999999876532  22333465  899999999999999999996 89999885

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1.8e-12  Score=101.92  Aligned_cols=91  Identities=18%  Similarity=0.123  Sum_probs=72.4

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ...+++-+|||+|||...+ +.||..+|..+|.|.++++  .        .+||||||.|.+.++|.++|+.|++..+..
T Consensus        10 ~~~~ps~~l~v~nlp~~~t-e~~l~~~F~~fG~I~~~~~--~--------~~k~~AfV~f~~~e~A~~ai~~~~~~~~~~   78 (104)
T d1wexa_          10 HKVSVSPVVHVRGLCESVV-EADLVEALEKFGTICYVMM--M--------PFKRQALVEFENIDSAKECVTFAADVPVYI   78 (104)
T ss_dssp             CCCCCCSEEEEESCCSSCC-HHHHHHHHTTTSCEEEEEE--E--------TTTTEEEEEESSHHHHHHHHHHHHHSCCBS
T ss_pred             CcCCCCCEEEEeCCCCCCC-HHHHHHhhhhcccceEEEE--E--------ecceeEEEEeCCHHHHHHHHHHHcCCCcEE
Confidence            3446788999999999865 8899999999999999973  2        238999999999999999999997776655


Q ss_pred             ceeeceeeeeeecCCCCCCCCCCC
Q 013598          269 GKVQKQIRCEMVNSSSSNSVDGHS  292 (439)
Q Consensus       269 gKVEK~ikcE~~~~~S~~~~~~~s  292 (439)
                      +  -++++++.+..+....+.++.
T Consensus        79 ~--g~~l~v~~s~~~~~~~~~~~~  100 (104)
T d1wexa_          79 A--GQQAFFNYSTSKRITRPGNSG  100 (104)
T ss_dssp             S--SSBCEEEECSSSSCCCSCCSC
T ss_pred             e--eEEEEEEEcCCCccCCCCCCC
Confidence            3  467888887766555544433

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=7.5e-13  Score=99.43  Aligned_cols=65  Identities=25%  Similarity=0.267  Sum_probs=56.0

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      +|||+|||...+ ..+|+++|..+|.|.++++.  .++.+    ++|||||.|.+.++|.++++ +||+.|.+
T Consensus         2 tv~V~nlp~~~t-~~~l~~~F~~~G~I~~v~~~--~~~~~----~~~~afV~F~~~~~a~~Al~-~~~~~i~g   66 (75)
T d2ghpa2           2 TVLVKNLPKSYN-QNKVYKYFKHCGPIIHVDVA--DSLKK----NFRFARIEFARYDGALAAIT-KTHKVVGQ   66 (75)
T ss_dssp             EEEEEEECTTCC-HHHHHHHHGGGSCEEEEEEE--ECTTS----SSEEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred             EEEEECCCCCCC-HHHHHHHHhcCCceEEEEEE--eeccc----cceEEEEEEcchHHhHHHHH-hcCcEECC
Confidence            799999999875 88999999999999999844  34433    37899999999999999996 79998764

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.1e-12  Score=98.68  Aligned_cols=74  Identities=18%  Similarity=0.228  Sum_probs=61.9

Q ss_pred             CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 013598          193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ  272 (439)
Q Consensus       193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVE  272 (439)
                      .|-+|||+|||  .+ +.+|+++|..+|.|++++.  ..        .||||||+|.+.++|.++|+.|||..|.+    
T Consensus         4 ~~~ti~V~~~~--~t-e~~L~~~F~~~G~I~~v~~--~~--------~~~~afV~f~~~~~A~~Ai~~lng~~~~g----   66 (79)
T d2bz2a1           4 KGNTLYVYGED--MT-PTLLRGAFSPFGNIIDLSM--DP--------PRNCAFVTYEKMESADQAVAELNGTQVES----   66 (79)
T ss_dssp             CCCEEEEECSS--CC-HHHHHHHHSTTCCCSCEEE--ET--------TTTEEEEECSSHHHHHHHHHHHTTCBCSS----
T ss_pred             CCCEEEEECCC--CC-HHHHHHHHhccCccceeee--cc--------CCCEEEEEEcccHHHHHHHHHhCCCEECC----
Confidence            46799999997  33 8899999999999999973  22        37999999999999999999999999874    


Q ss_pred             ceeeeeeecCC
Q 013598          273 KQIRCEMVNSS  283 (439)
Q Consensus       273 K~ikcE~~~~~  283 (439)
                      +.|+++.+..+
T Consensus        67 ~~l~V~~a~~~   77 (79)
T d2bz2a1          67 VQLKVNIARKQ   77 (79)
T ss_dssp             CBCEEEECCSS
T ss_pred             EEEEEEEecCC
Confidence            56677766543

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.2e-12  Score=99.73  Aligned_cols=80  Identities=16%  Similarity=0.209  Sum_probs=64.8

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      .+++-+|||+|||.+.+ +++|.++|..+|.|.+|+  ...+        ||||||.|.+.++|.++|+.++|..+.+. 
T Consensus         5 ~~Ps~~l~V~nLp~~~t-~~~L~~~f~~~G~i~~v~--~~~~--------~~~afV~f~~~e~A~~a~~~~~~~~~~~~-   72 (88)
T d2cq1a1           5 GAPSRVLHIRKLPGEVT-ETEVIALGLPFGKVTNIL--MLKG--------KNQAFLELATEEAAITMVNYYSAVTPHLR-   72 (88)
T ss_dssp             SSCCSEEEEESCCTTCC-HHHHHHTTTTTSCEEEEE--EETT--------TTEEEEEESSHHHHHHHHHHHHHSCCEET-
T ss_pred             CCCCCEEEEeCCCCCCC-HHHHHHHHhccccccccc--cccc--------ceEEEEEeCCHHHHHHHHHHHccCCCccC-
Confidence            46788999999999865 889999999999999997  3323        79999999999999999998876544442 


Q ss_pred             eeceeeeeeecCC
Q 013598          271 VQKQIRCEMVNSS  283 (439)
Q Consensus       271 VEK~ikcE~~~~~  283 (439)
                       -++++|+.++.+
T Consensus        73 -g~~l~v~~sk~~   84 (88)
T d2cq1a1          73 -NQPIYIQYSNHK   84 (88)
T ss_dssp             -TEECEEEECSCS
T ss_pred             -CCEEEEEECCCC
Confidence             367888776543

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.9e-13  Score=105.11  Aligned_cols=74  Identities=19%  Similarity=0.200  Sum_probs=60.5

Q ss_pred             CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       189 e~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .+...+.+|||+|||...+ +.||..+|.++|.+....  ...+.++|  .|+|||||.|.+.++|.++++ +||+.|.+
T Consensus        13 ~~~~~~~~i~v~nLp~~~t-~~di~~~F~~~g~~~~~~--~~~~~~~g--~~~G~afVeF~~~e~a~~al~-~~~~~i~g   86 (112)
T d1wela1          13 SPHEAGFCVYLKGLPFEAE-NKHVIDFFKKLDIVEDSI--YIAYGPNG--KATGEGFVEFRNEADYKAALC-RHKQYMGN   86 (112)
T ss_dssp             SCCCCCCEEEEECCCTTCC-HHHHHHHSCSSCBCTTTC--EEEECTTS--SEEEEEEEEBSSSHHHHHHHT-SCSBCSTT
T ss_pred             CCCCCCeEEEEecCCCcCc-HHHHhhHHhhccccccce--eeecCccc--ceeeEEEEEECCHHHHHHHHH-cCCCcCCC
Confidence            4455788999999999875 889999999999876543  22233354  899999999999999999996 89999876

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.8e-14  Score=107.24  Aligned_cols=69  Identities=20%  Similarity=0.215  Sum_probs=57.1

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeec---cccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPV---VSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpA---v~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      ||||||||.+.+ +.||+++|..+|.+..+.+.   ...+..|+  .-||||||+|.+.++|.++++ +||+.|.+
T Consensus         3 rlyVgNLp~~~t-e~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~--~~kg~afV~f~~~e~a~~a~~-l~g~~~~G   74 (90)
T d1u2fa_           3 RLYVGNIPFGIT-EEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAMA-FDGIIFQG   74 (90)
T ss_dssp             EEEECSCCTTCC-TTHHHHHHHHHHTTTTSCCSSSCSEEECCEE--TTTTEEEEEESSCTTTTTGGG-GSSCCSSS
T ss_pred             EEEEcCCCCccc-hHHHHHHHHhhCcEEEEEEeccceeeecccC--CCceEEEEEeCCHHHHHHHHh-hCCcEECC
Confidence            799999999865 88999999999988766543   12334454  669999999999999999985 99999986

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=5.8e-12  Score=100.50  Aligned_cols=84  Identities=7%  Similarity=-0.058  Sum_probs=67.9

Q ss_pred             CCCccEEEEcCCCCCCc-h---HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 013598          191 MPSGIRVRLLNLPKKKN-I---HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII  266 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~n-i---~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~  266 (439)
                      ++.+.+|||+||+.+.. .   .++|+.+|..+|.|+++++-  +   .     ||+|||+|.+.++|.++|+.+||+.|
T Consensus         2 ~~~~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~~--k---~-----~~~afV~f~~~~~A~~Ai~~lng~~~   71 (104)
T d1weya_           2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF--K---S-----FKRVRINFSNPLSAADARLRLHKTEF   71 (104)
T ss_dssp             CSCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE--T---T-----TTEEEEECSSTTHHHHHHHTSTTSEE
T ss_pred             CCCCceEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEEe--c---C-----CCEEEEEECCHHHHHHHHHHhccccc
Confidence            35677899999998631 1   24699999999999999832  2   2     78999999999999999999999998


Q ss_pred             ccceeeceeeeeeecCCCCCCC
Q 013598          267 AFGKVQKQIRCEMVNSSSSNSV  288 (439)
Q Consensus       267 ~fgKVEK~ikcE~~~~~S~~~~  288 (439)
                      .    .+.|+|+.+..+....+
T Consensus        72 ~----g~~l~v~~a~~~~~~~~   89 (104)
T d1weya_          72 L----GKEMKLYFAQTLHIGSS   89 (104)
T ss_dssp             T----TEECEEECCCCSSCCSC
T ss_pred             C----CCEeEEeecccCCCCCc
Confidence            7    56788888876655443

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=7.5e-12  Score=96.78  Aligned_cols=81  Identities=15%  Similarity=0.186  Sum_probs=65.1

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      ...+-.|||+|||+.+..+.||.++|..+|.|.+|..  ..+        ||||||.|++.++|..+|+.|++..+.+. 
T Consensus         5 ~~~sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i--~~~--------k~~afV~f~~~~~A~~A~~~l~~~~~~~~-   73 (89)
T d1x4da1           5 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI--LNK--------INEAFIEMATTEDAQAAVDYYTTTPALVF-   73 (89)
T ss_dssp             CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE--CSS--------SSCEEEEESSHHHHHHHHHHHHHSCCEET-
T ss_pred             CCCCcEEEEECCCCCcCCHHHHHHHHHhhCCeEEEEe--ecc--------ceEEEEEEcchhhHHHHHHHHhhCCCccC-
Confidence            3566679999999976558899999999999999983  333        78999999999999999998866654442 


Q ss_pred             eeceeeeeeecCC
Q 013598          271 VQKQIRCEMVNSS  283 (439)
Q Consensus       271 VEK~ikcE~~~~~  283 (439)
                       -+++++..++.+
T Consensus        74 -gr~l~V~~s~~~   85 (89)
T d1x4da1          74 -GKPVRVHLSQKY   85 (89)
T ss_dssp             -TEECEEEEECCC
T ss_pred             -CceEEEEECCCc
Confidence             478888887643

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=9e-12  Score=97.75  Aligned_cols=81  Identities=19%  Similarity=0.220  Sum_probs=62.2

Q ss_pred             CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 013598          191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK  270 (439)
Q Consensus       191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgK  270 (439)
                      ...+-+|||+|||.+..-+.+|..+|..+|.|.+|++  ..+        ||||||.|.+.++|.++|+.++...+.++ 
T Consensus        15 ~~~~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~--~~~--------k~~afV~f~~~~~A~~Ai~~~~~~~~~~~-   83 (99)
T d1x4fa1          15 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL--MRM--------KSQAFIEMETREDAMAMVDHCLKKALWFQ-   83 (99)
T ss_dssp             SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE--ETT--------TTEEEEECSSHHHHHHHHHHHHHSCCCSS-
T ss_pred             CCCCCEEEEeCCcCCccCHHHHHhhhccccceeEEEE--eec--------CCcEEEEecchHHHHHHHHHHhcCCceEC-
Confidence            3467789999999863127899999999999999983  222        79999999999999999996544444342 


Q ss_pred             eeceeeeeeecCC
Q 013598          271 VQKQIRCEMVNSS  283 (439)
Q Consensus       271 VEK~ikcE~~~~~  283 (439)
                       -+.++|..+..+
T Consensus        84 -gr~l~V~~s~~~   95 (99)
T d1x4fa1          84 -GRCVKVDLSEKY   95 (99)
T ss_dssp             -SSCCEEEEECSC
T ss_pred             -CEEEEEEEcCCc
Confidence             466777776544

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.9e-11  Score=97.90  Aligned_cols=68  Identities=16%  Similarity=0.250  Sum_probs=58.1

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      ||||||||..++ +.+|+++|..+|.|+++.  ...++.||  .+||||||.|.+.++|.++++.++ ..+++.
T Consensus         8 ~lfV~nLp~~~t-e~~L~~~F~~~G~v~~~~--~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~~~-~~~~~~   75 (183)
T d1u1qa_           8 KLFIGGLSFETT-DESLRSHFEQWGTLTDCV--VMRDPNTK--RSRGFGFVTYATVEEVDAAMNARP-HKVDGR   75 (183)
T ss_dssp             EEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHTCS-CEETTE
T ss_pred             EEEEECCCCCCC-HHHHHHHHHHcCCEEEEE--eeecccCC--CccCceecccCCHHHHHHHHHhcC-Cccccc
Confidence            899999999865 889999999999999998  45566676  899999999999999999999654 445543

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.6e-10  Score=92.42  Aligned_cols=69  Identities=14%  Similarity=0.006  Sum_probs=57.5

Q ss_pred             CCCCccEE-EEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCH-HHHHHHHHHhCCceec
Q 013598          190 DMPSGIRV-RLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESE-DYATRFVQLFSRQIIA  267 (439)
Q Consensus       190 ~~~dgvRV-rVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~se-EdA~rfIEk~NGq~~~  267 (439)
                      ..+.|..+ ||||||..++ +.+|+++|..+|.|.+|.+.  .        .||||||+|.+. ++|..+|..+||..+.
T Consensus         6 ~~~~g~~~~fvgnL~~~~t-ee~Lk~~F~~fG~V~~v~i~--~--------~kg~gfV~F~~~~~~A~~a~~~~~~~~l~   74 (113)
T d1owxa_           6 EEKIGCLLKFSGDLDDQTC-REDLHILFSNHGEIKWIDFV--R--------GAKEGIILFKEKAKEALGKAKDANNGNLQ   74 (113)
T ss_dssp             SCCCCCEEEEEESCCSSCC-HHHHHHHTCSSCCEEEEECC--T--------TCSEEEEEESSCHHHHHHHHHHTTTSCBC
T ss_pred             CCCCCCeEEEECCCCCCCC-HHHHHHHHHhcCChheEEEe--c--------CCceEEEEecCcHHHHHHHHHHhcCCcee
Confidence            34555555 9999999865 88999999999999999842  2        289999999996 7899999999999887


Q ss_pred             cc
Q 013598          268 FG  269 (439)
Q Consensus       268 fg  269 (439)
                      ..
T Consensus        75 ~~   76 (113)
T d1owxa_          75 LR   76 (113)
T ss_dssp             TT
T ss_pred             cC
Confidence            53

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.5e-10  Score=91.59  Aligned_cols=78  Identities=9%  Similarity=0.112  Sum_probs=61.4

Q ss_pred             CCccEEEEcC--CCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          192 PSGIRVRLLN--LPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       192 ~dgvRVrVGN--LPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      .+.-+|+|+|  ||...+ +.+|+.+|..+|.|..|+  ...        .||||||.|.+.++|.++|+.+||+.|..+
T Consensus        16 ~pt~~l~V~ng~L~~~vt-e~~L~~~F~~~G~i~~i~--~~~--------~k~~aFV~f~~~e~A~~A~~~lng~~i~~~   84 (101)
T d2cq2a1          16 YATQSLVVANGGLGNGVS-RNQLLPVLEKCGLVDALL--MPP--------NKPYSFARYRTTEESKRAYVTLNGKEVVDD   84 (101)
T ss_dssp             SCCSEEEEETCTGGGTCC-HHHHHHHHHHHSCEEEEE--CCT--------TCSCEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred             CCCceEEEECCCCCCCCC-HHHHHHHHHhhCcccEEe--ecc--------CccEEEEEECCHHHHHHHHHHhCCCCCCCC
Confidence            4556788855  999865 889999999999999997  222        289999999999999999999999998763


Q ss_pred             e-eeceeeeeee
Q 013598          270 K-VQKQIRCEMV  280 (439)
Q Consensus       270 K-VEK~ikcE~~  280 (439)
                      . ...++.|..+
T Consensus        85 ~~~~i~~~~~~~   96 (101)
T d2cq2a1          85 LGQKITLYLNFV   96 (101)
T ss_dssp             TSCEEECEEEEE
T ss_pred             CCcEEEEEEEee
Confidence            2 2334444444

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=5.8e-10  Score=87.68  Aligned_cols=86  Identities=20%  Similarity=0.267  Sum_probs=68.0

Q ss_pred             CCCCCCccEEEEcCC--CCCC--------chHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHH
Q 013598          188 PEDMPSGIRVRLLNL--PKKK--------NIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRF  257 (439)
Q Consensus       188 ~e~~~dgvRVrVGNL--Pkk~--------ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rf  257 (439)
                      +.....+-.|+|.||  |.+.        +|..||++.|..+|.|.+|++.  .+      ..+|||||.|++.++|.++
T Consensus         2 p~~~~~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~~--~~------~~~G~~fV~f~~~e~A~~A   73 (99)
T d2dita1           2 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF--DR------HPDGVASVSFRDPEEADYC   73 (99)
T ss_dssp             CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE--TT------CTTCEEEEECSCHHHHHHH
T ss_pred             CCCCCCccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEecc--CC------CCccEEEEEECCHHHHHHH
Confidence            334446678999999  7631        2346899999999999999732  22      3489999999999999999


Q ss_pred             HHHhCCceeccceeeceeeeeeecCCCC
Q 013598          258 VQLFSRQIIAFGKVQKQIRCEMVNSSSS  285 (439)
Q Consensus       258 IEk~NGq~~~fgKVEK~ikcE~~~~~S~  285 (439)
                      |..+||+.|.    -++|+|+...+.+.
T Consensus        74 ~~~lng~~~~----gr~i~v~~~~g~~~   97 (99)
T d2dita1          74 IQTLDGRWFG----GRQITAQAWDGTTD   97 (99)
T ss_dssp             HHHSTTCEET----TEECEEEECCSCCC
T ss_pred             HHHhCCcEEC----CEEEEEEEeCCcCC
Confidence            9999999987    47888998876653

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=7.7e-11  Score=93.89  Aligned_cols=74  Identities=14%  Similarity=0.108  Sum_probs=61.6

Q ss_pred             cEEEEcCCCCCCch-HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 013598          195 IRVRLLNLPKKKNI-HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK  273 (439)
Q Consensus       195 vRVrVGNLPkk~ni-~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fgKVEK  273 (439)
                      -.++|.|++.+  + +.+|+++|..+|.|.+|++.  .+ .||  ..||||||+|.+.++|.++|+.+||+.|.+    +
T Consensus        28 ~~~~v~~~~~~--~~ed~l~e~f~k~G~I~~v~I~--~~-~~~--~~~G~~fV~f~~~~~A~~Ai~~lng~~~~g----r   96 (104)
T d1jmta_          28 SDVEMQEHYDE--FFEEVFTEMEEKYGEVEEMNVC--DN-LGD--HLVGNVYVKFRREEDAEKAVIDLNNRWFNG----Q   96 (104)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHHHHTCCEEEEEEC--CS-SSS--SSEEEEEEEESCHHHHHHHHHHHTTCEETT----E
T ss_pred             chHHhhhhhhh--hhHHHHHHHhccCCCEEEEEee--cC-CCC--CEeeEEEEEEechhHHHHHHHHHCCCEECC----E
Confidence            45788999985  5 66799999999999999853  33 465  889999999999999999999999999863    4


Q ss_pred             eeeeee
Q 013598          274 QIRCEM  279 (439)
Q Consensus       274 ~ikcE~  279 (439)
                      .|+|+.
T Consensus        97 ~i~v~~  102 (104)
T d1jmta_          97 PIHAEL  102 (104)
T ss_dssp             ECCEEE
T ss_pred             EEEEEE
Confidence            566654

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.5e-08  Score=79.72  Aligned_cols=84  Identities=15%  Similarity=0.110  Sum_probs=66.1

Q ss_pred             CCccEEEEcCC--CCCCc-------hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhC
Q 013598          192 PSGIRVRLLNL--PKKKN-------IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFS  262 (439)
Q Consensus       192 ~dgvRVrVGNL--Pkk~n-------i~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~N  262 (439)
                      +++-.|.|.||  |.+..       +..||++.|..+|.|.+|++..  ++.+..+..+||+||.|.+.++|.++|..||
T Consensus         2 ~Ps~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G~v~~v~I~~--~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~   79 (104)
T d1o0pa_           2 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPR--PVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT   79 (104)
T ss_dssp             CCCSEEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTSCEEEEECCC--CTTSSSCTTCCEEEEEESCHHHHHHHHHHHS
T ss_pred             CCCcEEEEeCCCCHHHcCCchhHHHHHHHHHHHhcccCceEEEEEee--cCCCCccCCceEEEEEECCHHHHHHHHHHHC
Confidence            45667999999  66421       2457999999999999998543  3445556778999999999999999999999


Q ss_pred             Cceeccceeeceeeeeeec
Q 013598          263 RQIIAFGKVQKQIRCEMVN  281 (439)
Q Consensus       263 Gq~~~fgKVEK~ikcE~~~  281 (439)
                      |+.|.    -+.++|..++
T Consensus        80 Gr~f~----gR~v~v~f~~   94 (104)
T d1o0pa_          80 GRKFA----NRVVVTKYCD   94 (104)
T ss_dssp             SCCSS----SSCCEEEEEC
T ss_pred             CCEEC----CeEEEEEEcC
Confidence            99987    4566776653

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=4e-08  Score=75.46  Aligned_cols=63  Identities=13%  Similarity=0.171  Sum_probs=51.5

Q ss_pred             ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 013598          194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG  269 (439)
Q Consensus       194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~fg  269 (439)
                      .-.|+|+.||.+.. +..| ..|+.+|.|++++.          +..||||||.|.+.++|.++++ +||+.|.+.
T Consensus         4 ~~wV~V~G~p~~~~-~~il-~~F~~~G~I~~~~~----------~~~~~~~fV~f~~~~~A~~Al~-~nG~~~~g~   66 (81)
T d1wwha1           4 DTWVTVFGFPQASA-SYIL-LQFAQYGNILKHVM----------SNTGNWMHIRYQSKLQARKALS-KDGRIFGES   66 (81)
T ss_dssp             GGEEEEECCCGGGH-HHHH-HHHHTTSCEEEEEE----------CSSSSEEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred             ccEEEEECCChHHH-HHHH-HHHHhhhhhheEEe----------cCCCCEEEEEEcccHHHHHHHh-cCCCeECCc
Confidence            45699999999742 5455 57999999999972          1348999999999999999996 999998653

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.055  Score=42.68  Aligned_cols=70  Identities=16%  Similarity=0.225  Sum_probs=55.7

Q ss_pred             EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 013598          196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF  268 (439)
Q Consensus       196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpAv~~nrKTgDp~CKGFAFVTf~seEdA~rfIEk~NGq~~~f  268 (439)
                      .|-|.+||.... +.++.+.+.+.|.+-.+.- +-++. +-.|.+=--||++|.+.++...|.+.++|+.|.+
T Consensus         3 KvVvRrLPP~Lt-e~~F~~~l~~~~~~d~~~f-~~Gk~-s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F~D   72 (91)
T d1uw4a_           3 KVVIRRLPPTLT-KEQLQEHLQPMPEHDYFEF-FSNDT-SLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD   72 (91)
T ss_dssp             EEEEEEECTTCC-HHHHHHHHCSCCCEEEEEE-EESCC-SSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred             eEEEecCCCCCC-HHHHHHHhCCcCceEEEEE-eCCCc-CCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEc
Confidence            578999999854 7789999999998766542 22333 3335556789999999999999999999999877

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.17  E-value=0.005  Score=44.62  Aligned_cols=40  Identities=13%  Similarity=0.027  Sum_probs=32.3

Q ss_pred             hcCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       131 ~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      .+++||||++.|++.+.+.++++.|.+.. .++.+.+.+++
T Consensus        39 ~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~   79 (81)
T d2ghpa1          39 FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN   79 (81)
T ss_dssp             ----CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             cccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence            35899999999999999999999999877 88888887553

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.15  E-value=0.0028  Score=46.39  Aligned_cols=40  Identities=18%  Similarity=0.198  Sum_probs=34.7

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      .+|||||++.|++.+.+++++++|.+.. .++.+.+.++..
T Consensus        40 ~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a~~   80 (85)
T d2cpfa1          40 LLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER   80 (85)
T ss_dssp             EEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred             cccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            3679999999999999999999999877 888888876643

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.0066  Score=44.28  Aligned_cols=44  Identities=14%  Similarity=0.183  Sum_probs=39.4

Q ss_pred             hcCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       131 ~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      -.+++|||++.+.+.+.+.+++++|.+.. .++.+.+..++..|+
T Consensus        35 ~~~~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~P~   79 (79)
T d2bz2a1          35 MDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM   79 (79)
T ss_dssp             EETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred             eccCCCEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence            35899999999999999999999999877 889999998887774

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.88  E-value=0.0074  Score=45.46  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=35.5

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE  172 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~  172 (439)
                      .++||||++.|.+.+.++++|+.|.+.. .+|.+.+..++.+
T Consensus        47 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a~~~   88 (99)
T d1whwa_          47 KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK   88 (99)
T ss_dssp             CCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred             cccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            4899999999999999999999998866 7888888865544

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.0099  Score=44.51  Aligned_cols=43  Identities=14%  Similarity=0.301  Sum_probs=38.0

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      +.+||||++.|++.+.+++++++|.+.. .++.+-++.+++++.
T Consensus        48 ~~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A~~r~~   91 (93)
T d2cq3a1          48 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM   91 (93)
T ss_dssp             TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred             cCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCcCCC
Confidence            4689999999999999999999999977 888888888777664

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.0072  Score=43.93  Aligned_cols=40  Identities=5%  Similarity=0.055  Sum_probs=34.2

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      .++||||++.|.+.+.++++|++|.+.. .+|.+-++.+.+
T Consensus        38 g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~~   78 (83)
T d1x5ta1          38 GNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK   78 (83)
T ss_dssp             CSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCC
T ss_pred             cccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEecC
Confidence            3789999999999999999999999877 778777775443

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.012  Score=43.79  Aligned_cols=43  Identities=9%  Similarity=0.095  Sum_probs=38.0

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .+|.+.+..++++|.
T Consensus        55 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~a~~~~p   98 (101)
T d2cpea1          55 GKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP   98 (101)
T ss_dssp             CSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred             ccccceeeEEecCHHHHHHHHHHhCCCEECCEEEEEEEcCCCCC
Confidence            3789999999999999999999999877 889999988777655

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.017  Score=42.46  Aligned_cols=42  Identities=10%  Similarity=0.239  Sum_probs=35.4

Q ss_pred             hcCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccC
Q 013598          131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE  172 (439)
Q Consensus       131 ~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~  172 (439)
                      ..+++|||++.+++.+.++++++.|.+.. .++.+-++++.++
T Consensus        43 ~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~~~   85 (90)
T d1x5sa1          43 TQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS   85 (90)
T ss_dssp             SCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECC
T ss_pred             cccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence            45899999999999999999999999877 7777777765443

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.43  E-value=0.015  Score=43.66  Aligned_cols=41  Identities=15%  Similarity=0.216  Sum_probs=34.6

Q ss_pred             CCCCccccccccchHHHHHHHHH-HhhH-HhhhhhccccccCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEI-QQSR-EAQMANINKLENEL  173 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM-~~sr-~araaNld~~~~~P  173 (439)
                      ++||||++.|++...++++|+.| .+.. .|+.+.+++++++.
T Consensus        49 ~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~A~~~~   91 (94)
T d2cpha1          49 AHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV   91 (94)
T ss_dssp             SSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred             CcccEEEEEECCHHHHHHHHHHccCCcEECCEEEEEEEcCCCC
Confidence            78999999999999999999999 4444 78888888776553

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.42  E-value=0.011  Score=42.63  Aligned_cols=38  Identities=3%  Similarity=0.016  Sum_probs=33.4

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      ++||||++.+++.+.++++|+.|.+.. .++.+.+.+++
T Consensus        42 ~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~   80 (82)
T d1b7fa1          42 YSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR   80 (82)
T ss_dssp             EECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            789999999999999999999999877 77777777654

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.015  Score=42.45  Aligned_cols=39  Identities=5%  Similarity=0.105  Sum_probs=33.7

Q ss_pred             CCCCccccccccchHHHHHHHHHHhh-H-Hhhhhhcccccc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQS-R-EAQMANINKLEN  171 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~s-r-~araaNld~~~~  171 (439)
                      ++||||++.|.+.+.+++++++|.+. . .|+.+.+.++.+
T Consensus        35 ~~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~~   75 (80)
T d2cqha1          35 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS   75 (80)
T ss_dssp             EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred             cccceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcCC
Confidence            57999999999999999999999874 4 888888886553

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.14  E-value=0.009  Score=44.17  Aligned_cols=41  Identities=7%  Similarity=0.012  Sum_probs=35.2

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      .++||||++.|.+.+.++++|+ |.+.. .++.+.+.++++.|
T Consensus        45 ~~~kg~afV~f~~~~~a~~Al~-~n~~~~~gr~l~V~~a~~kP   86 (86)
T d2ghpa3          45 SFNNCCAFMVFENKDSAERALQ-MNRSLLGNREISVSLADKKP   86 (86)
T ss_dssp             -CCCEEEEEEESSHHHHHHHGG-GTTEEETTEEEEEEECCCCC
T ss_pred             cccceeeeEEECCHHHHHHHHh-cCCCEECCEEEEEEEcCCCC
Confidence            3899999999999999999995 88877 88888888877666

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.013  Score=43.27  Aligned_cols=42  Identities=7%  Similarity=0.162  Sum_probs=36.1

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      +++||||++.+++.+.++++++.|.+.. .++.+.+.+++.++
T Consensus        40 g~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~~~~   82 (85)
T d2u2fa_          40 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA   82 (85)
T ss_dssp             SCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECCCCC
T ss_pred             cccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence            4889999999999999999999998877 78888888765443

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.021  Score=42.23  Aligned_cols=39  Identities=15%  Similarity=0.158  Sum_probs=33.9

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      .++||||++.+++.+.++++++.|.+.. .++.+.++.++
T Consensus        44 ~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a~   83 (89)
T d2cqba1          44 EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK   83 (89)
T ss_dssp             CCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             ccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence            4899999999999999999999998876 78888877653

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=91.90  E-value=0.017  Score=43.42  Aligned_cols=39  Identities=18%  Similarity=0.170  Sum_probs=33.1

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      .++||||++.|.+.+.++++| ||.+.. .+|.+.++.+++
T Consensus        51 g~~kg~afv~F~~~e~a~~Al-~~~g~~~~g~~i~V~~ak~   90 (91)
T d1fjeb1          51 GTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKG   90 (91)
T ss_dssp             ETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCC
T ss_pred             CCccEEeEEeeCCHHHHHHHH-hcCCcEECCEEEEEEecCC
Confidence            389999999999999999999 588777 888888876654

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.89  E-value=0.019  Score=41.71  Aligned_cols=43  Identities=14%  Similarity=0.200  Sum_probs=38.1

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      +++||||++.+.+.+-+++++++|.+.. .+|.+.+.+++.++.
T Consensus        30 ~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~d~~   73 (75)
T d1wi6a1          30 DKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTDAL   73 (75)
T ss_dssp             ETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCSTTC
T ss_pred             cccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCCCCc
Confidence            4899999999999999999999999988 889998887766654

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.82  E-value=0.02  Score=41.55  Aligned_cols=39  Identities=10%  Similarity=0.101  Sum_probs=33.7

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      .++||||++.|.+.+-+.+++++|.+.. .+|.+.++++.
T Consensus        38 g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a~   77 (78)
T d1no8a_          38 GRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT   77 (78)
T ss_dssp             CCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             cccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            3899999999999999999999999876 77777776654

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.80  E-value=0.046  Score=40.27  Aligned_cols=42  Identities=5%  Similarity=0.049  Sum_probs=36.1

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .+.|||++.|.+...++++|+.|.+.. .++.+.+.+.+..+.
T Consensus        33 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~~~~~~   75 (87)
T d3begb1          33 YRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD   75 (87)
T ss_dssp             CTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred             cccceeeEEeCCHHHHHHHHHHhCCCEECCcEeEEeEEecCcC
Confidence            456999999999999999999999988 888888887765544

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.67  E-value=0.032  Score=40.71  Aligned_cols=39  Identities=5%  Similarity=0.057  Sum_probs=34.5

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      .++||||++.+.+.+.+.+++.+|.+.. .++.+.+.+++
T Consensus        41 ~~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~ak   80 (86)
T d2cpda1          41 KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK   80 (86)
T ss_dssp             EECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred             ccccEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEecc
Confidence            3899999999999999999999999877 88888887654

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.015  Score=43.59  Aligned_cols=40  Identities=13%  Similarity=0.194  Sum_probs=34.5

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE  172 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~  172 (439)
                      ++||||++.|++.+.++++++.|.+.. .++.+.+++++++
T Consensus        49 ~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A~~~   89 (93)
T d1x5ua1          49 QHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH   89 (93)
T ss_dssp             SBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred             ccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence            899999999999999999999999876 7788887765543

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.42  E-value=0.037  Score=41.53  Aligned_cols=48  Identities=6%  Similarity=-0.015  Sum_probs=41.1

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCCCCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPK  179 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~  179 (439)
                      .++||||++.|.+...+.+++++|.+.. .++.+.++++..++....+.
T Consensus        43 ~~~kg~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a~~~~~~~~~~   91 (111)
T d1whxa_          43 PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQ   91 (111)
T ss_dssp             CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTTCCCCC
T ss_pred             eccCceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEECCCCccccccc
Confidence            4789999999999999999999999977 88999998887776554444

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.40  E-value=0.025  Score=42.78  Aligned_cols=42  Identities=5%  Similarity=0.031  Sum_probs=37.0

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      +.||||++.|++.+.++++++.|.+.. .++.+-+..++.+|.
T Consensus        52 ~~kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~ak~~p~   94 (96)
T d1x4ga1          52 PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD   94 (96)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred             ecceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCCCC
Confidence            679999999999999999999999877 888888888776663

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.20  E-value=0.015  Score=43.14  Aligned_cols=40  Identities=5%  Similarity=-0.045  Sum_probs=34.2

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      +++||||++.|++.+.++++++.|.+.. .+|.+.++++.+
T Consensus        46 g~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a~~   86 (88)
T d1rk8a_          46 GFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV   86 (88)
T ss_dssp             SSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred             cccccceeEEECCHHHHHHHHHHcCCCEECCEEEEEEEecC
Confidence            4789999999999999999999998876 777777776543

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.18  E-value=0.0064  Score=47.29  Aligned_cols=60  Identities=5%  Similarity=-0.071  Sum_probs=49.5

Q ss_pred             ccccccchHHHHHHhhcCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCCC
Q 013598          116 DEGMMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLK  175 (439)
Q Consensus       116 dE~~~~~~~~M~~wl~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~  175 (439)
                      =+.-|-.|+.+..|--.|++|||.+.|.+...+.+++++|.+.. .++.+.+.+++..+..
T Consensus        27 l~~lF~~~G~i~~~~~~k~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~~~   87 (104)
T d1weya_          27 FESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHIG   87 (104)
T ss_dssp             HHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSSCC
T ss_pred             HHHHhcccccceEEEEecCCCEEEEEECCHHHHHHHHHHhcccccCCCEeEEeecccCCCC
Confidence            34456677777666666999999999999999999999999988 8899999988665543

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.0083  Score=43.70  Aligned_cols=39  Identities=8%  Similarity=0.106  Sum_probs=33.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      ++++|||++.|.+.+.+++++++|.+.. .+|.+.+++++
T Consensus        39 g~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a~   78 (80)
T d1cvja1          39 RRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ   78 (80)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEECC
T ss_pred             cCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence            4789999999999999999999999877 77887777554

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.70  E-value=0.016  Score=43.00  Aligned_cols=40  Identities=8%  Similarity=0.095  Sum_probs=34.6

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      +++||||++.|.+...+++++++|.+.. .++.+-+.++++
T Consensus        47 ~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~akp   87 (90)
T d2cq0a1          47 GQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP   87 (90)
T ss_dssp             CSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred             cccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEEeeeC
Confidence            3789999999999999999999999876 788888876653

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.64  E-value=0.019  Score=41.28  Aligned_cols=39  Identities=13%  Similarity=0.248  Sum_probs=34.1

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      +++||||++.|.+.+.+++++++|.+.. .++.+.+++++
T Consensus        41 ~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~Ak   80 (82)
T d1fxla1          41 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR   80 (82)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            4899999999999999999999999877 77888777653

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=0.022  Score=44.16  Aligned_cols=37  Identities=11%  Similarity=0.003  Sum_probs=32.9

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINK  168 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~  168 (439)
                      .++||||++.+.+.+.+.+++++|.+.+ .||.+.+.+
T Consensus        65 ~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~  102 (104)
T d1jmta_          65 DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL  102 (104)
T ss_dssp             SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEE
T ss_pred             CCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEE
Confidence            4889999999999999999999999988 888777654

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.24  E-value=0.022  Score=43.40  Aligned_cols=38  Identities=13%  Similarity=0.110  Sum_probs=34.7

Q ss_pred             CCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       134 PrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      +||||++.|.+.+.+++++++|.+.. .++.+.+++++.
T Consensus        49 ~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~   87 (98)
T d1wf2a_          49 HKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAE   87 (98)
T ss_dssp             ETEEEEEEESSHHHHHHHHHTTTTCEETTEECEEEETTS
T ss_pred             eCCeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            68999999999999999999999888 899999998654

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.93  E-value=0.026  Score=43.31  Aligned_cols=38  Identities=5%  Similarity=0.051  Sum_probs=31.9

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      .++||||++.|.+.+.+.++| +|.+.. .|+.+.+..+.
T Consensus        57 g~~kG~afV~F~~~e~a~~A~-~l~g~~~~G~~l~V~~a~   95 (101)
T d2cq4a1          57 RRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ   95 (101)
T ss_dssp             SSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred             ccccceEEEEECCHHHHHHHH-HHCCCEECCEEEEEEECC
Confidence            489999999999999999999 488866 77777776554

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.52  E-value=0.018  Score=42.70  Aligned_cols=54  Identities=13%  Similarity=0.196  Sum_probs=40.2

Q ss_pred             ccchHHHHHHhhcCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          120 MISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       120 ~~~~~~M~~wl~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      |-+|+.+.+..-.+.||||++.+++...+++++++|.+.. .++.+.+.++...+
T Consensus        29 F~~~G~i~~i~~~~~k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~~~~   83 (86)
T d2cpja1          29 FEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA   83 (86)
T ss_dssp             TSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred             HHHhCCceEeeeecccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCcC
Confidence            3344444333334789999999999999999999999877 78888877655443

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.40  E-value=0.035  Score=43.74  Aligned_cols=41  Identities=12%  Similarity=0.151  Sum_probs=35.9

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE  172 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~  172 (439)
                      +++||||++.|.+.+.++++|+.|.+.. .+|.+.+.+++.+
T Consensus        81 ~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~~  122 (139)
T d1u6fa1          81 RQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG  122 (139)
T ss_dssp             TEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred             ccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            3789999999999999999999998877 8888998876543

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.38  E-value=0.032  Score=40.75  Aligned_cols=35  Identities=23%  Similarity=0.371  Sum_probs=26.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANIN  167 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld  167 (439)
                      ++|||||++.+.+.+.++++|+ |.+.. .||.+++.
T Consensus        39 g~~kG~aFV~f~~~~~a~~al~-~~~~~i~Gr~i~V~   74 (77)
T d1uawa_          39 KRSRGFGFVTFMDQAGVDKVLA-QSRHELDSKTIDPK   74 (77)
T ss_dssp             SSCSSEEEECCCCTTHHHHHHH-TTTCCCSSCCCEEE
T ss_pred             CCccceEEEEECCHHHHHHHHH-cCCCEECCeEEEEE
Confidence            4899999999999999999996 44433 55555544

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.21  E-value=0.031  Score=41.82  Aligned_cols=40  Identities=13%  Similarity=0.201  Sum_probs=35.5

Q ss_pred             hcCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       131 ~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      .+++||||++.+.+.+.++++++.|.+.. .++.+.++++.
T Consensus        45 ~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~a~   85 (93)
T d1h2vz_          45 KKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA   85 (93)
T ss_dssp             TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred             cccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            45899999999999999999999999877 88899888764

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.19  E-value=0.043  Score=40.32  Aligned_cols=40  Identities=8%  Similarity=0.135  Sum_probs=30.2

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-------Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-------EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-------~araaNld~~~~  171 (439)
                      +++||||++.|++.+.++++|+.|....       .+|.+.++.+++
T Consensus        47 ~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~v~~a~~   93 (98)
T d1x4ha1          47 EHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVT   93 (98)
T ss_dssp             CCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCC
T ss_pred             ccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEEEEEEECCC
Confidence            3789999999999999999999886422       445555654433

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.04  E-value=0.032  Score=41.34  Aligned_cols=40  Identities=18%  Similarity=0.031  Sum_probs=34.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      .+++|||++.|.+...+.+++++|.+.. .++.+++.+++.
T Consensus        43 ~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v~~ak~   83 (91)
T d1nu4a_          43 LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT   83 (91)
T ss_dssp             HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSS
T ss_pred             ccCCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeCC
Confidence            3679999999999999999999999876 888888876654

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.73  E-value=0.056  Score=40.26  Aligned_cols=39  Identities=5%  Similarity=-0.085  Sum_probs=35.1

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      ++||||++.|++.+.++++++.|.+.. .++.+.+.++++
T Consensus        51 ~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a~~   90 (95)
T d1x4aa1          51 GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS   90 (95)
T ss_dssp             SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             cccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeccC
Confidence            689999999999999999999999988 888898887654

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.66  E-value=0.032  Score=42.42  Aligned_cols=43  Identities=19%  Similarity=0.219  Sum_probs=34.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhHHhhhhhccccccCCC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELL  174 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~  174 (439)
                      .+++|||++.|.+.+.++++|+.|.+.-.+|.+.++.+...+.
T Consensus        49 g~~kg~afV~f~~~~~A~~Ai~~~~~~l~Gr~l~V~~a~~~~~   91 (103)
T d2cqda1          49 GKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK   91 (103)
T ss_dssp             CCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTTCC
T ss_pred             cccCCeEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcCCCCC
Confidence            4799999999999999999999887533778888876665443

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.55  E-value=0.054  Score=40.26  Aligned_cols=40  Identities=15%  Similarity=0.059  Sum_probs=33.4

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      .+++|||++.|.+.+.+++++++|.+.. .++.+-+.++++
T Consensus        57 g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ak~   97 (102)
T d2cpxa1          57 GRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN   97 (102)
T ss_dssp             SSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred             ccccccceEEeccHHHHHHHHHHhCCCEECCEEEEEEeCCC
Confidence            3799999999999999999999998866 677777766543

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.53  E-value=0.021  Score=42.17  Aligned_cols=40  Identities=8%  Similarity=0.258  Sum_probs=34.0

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      +.+||||++.|.+.+.+++++++|.+.. .++.+.+..+++
T Consensus        45 ~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~~   85 (89)
T d1cvja2          45 NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS   85 (89)
T ss_dssp             TBCCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECCC
T ss_pred             CCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            4689999999999999999999998866 778888776543

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.22  E-value=0.038  Score=41.93  Aligned_cols=40  Identities=10%  Similarity=0.082  Sum_probs=33.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN  171 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~  171 (439)
                      +++||||++.|.+.+.++++|++|.+.. .++.+.+.++++
T Consensus        57 g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a~~   97 (102)
T d2cpza1          57 NLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS   97 (102)
T ss_dssp             CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             CCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEeCC
Confidence            3789999999999999999999999877 777777775443

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.05  E-value=0.086  Score=39.93  Aligned_cols=42  Identities=7%  Similarity=0.104  Sum_probs=36.9

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      .++||+++.|.+.+.+++++++|.+.. .++.+.+.+.+.+|.
T Consensus        48 ~~~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~v~~~~~~~~   90 (98)
T d1wg4a_          48 QKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPE   90 (98)
T ss_dssp             ETTTEEEEEESSHHHHHHHHHHHSSEEEECTTSCEEEEEEECC
T ss_pred             cccceEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEEecCCC
Confidence            568999999999999999999999988 888888888766554

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.02  E-value=0.019  Score=42.43  Aligned_cols=37  Identities=14%  Similarity=0.232  Sum_probs=29.1

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhHHhhhhhccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINK  168 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr~araaNld~  168 (439)
                      .+|||||++.|.+.+.++++|+.++..-.||.+.+..
T Consensus        45 g~~kG~afV~f~~~~~a~~ai~~~~~~i~Gr~i~V~~   81 (84)
T d1l3ka1          45 KRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR   81 (84)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred             CCcccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEe
Confidence            4899999999999999999997554433666666553

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.84  E-value=0.061  Score=39.32  Aligned_cols=42  Identities=10%  Similarity=0.035  Sum_probs=35.1

Q ss_pred             hcCCCCccccccccchHHHHHHHHHHhhH--HhhhhhccccccC
Q 013598          131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR--EAQMANINKLENE  172 (439)
Q Consensus       131 ~nKPrGFG~GK~YdT~iEeKlLeEM~~sr--~araaNld~~~~~  172 (439)
                      ..+.||||++.|.+.+.+.+++.+|.+..  +++.+.+.+++++
T Consensus        44 ~~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v~~sk~~   87 (88)
T d2adca2          44 FQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST   87 (88)
T ss_dssp             CSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred             eecccceeEEEECCHHHHHHHHHhccCCEecCCCEEEEEeCCCC
Confidence            34779999999999999999999999865  5788888776653

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.72  E-value=0.056  Score=41.18  Aligned_cols=40  Identities=13%  Similarity=0.206  Sum_probs=35.3

Q ss_pred             hcCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       131 ~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      .++++||+++.|.+.+.+.+++..|.+.+ .+|.+.+.+..
T Consensus        53 ~~~~~G~~fV~f~~~e~A~~A~~~lng~~~~gr~i~v~~~~   93 (99)
T d2dita1          53 DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD   93 (99)
T ss_dssp             TTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred             CCCCccEEEEEECCHHHHHHHHHHhCCcEECCEEEEEEEeC
Confidence            56899999999999999999999999988 88888877543

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.39  E-value=0.082  Score=38.96  Aligned_cols=38  Identities=8%  Similarity=0.068  Sum_probs=34.0

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      ..+|||++.|++.+.++++++.|.+.. .++.+.+++++
T Consensus        46 ~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~   84 (90)
T d2cqia1          46 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT   84 (90)
T ss_dssp             SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             ccceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence            568999999999999999999999977 88888888765

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=87.33  E-value=0.034  Score=41.56  Aligned_cols=44  Identities=14%  Similarity=0.118  Sum_probs=37.6

Q ss_pred             hcCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       131 ~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      ..+++|||++.|.+.+.++++++.|.+.. .+|.+.++++.++..
T Consensus        49 ~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a~~k~~   93 (96)
T d1fjca_          49 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG   93 (96)
T ss_dssp             TTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred             cCccccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence            34889999999999999999999998877 889999987665443

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.23  E-value=0.057  Score=40.16  Aligned_cols=41  Identities=17%  Similarity=0.123  Sum_probs=33.8

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH---HhhhhhccccccC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR---EAQMANINKLENE  172 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr---~araaNld~~~~~  172 (439)
                      .++||||++.|++...+.++++.|.+..   .++.+.++.+++.
T Consensus        42 ~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~A~p~   85 (96)
T d2disa1          42 MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPE   85 (96)
T ss_dssp             TTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSS
T ss_pred             ccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEEEcCCC
Confidence            4799999999999999999999986533   5788888877543

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.20  E-value=0.052  Score=39.06  Aligned_cols=34  Identities=18%  Similarity=0.377  Sum_probs=26.5

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANI  166 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNl  166 (439)
                      +++||||++.|.+.+.++++|+ |.+.. .||.+++
T Consensus        38 ~~~kg~afV~f~~~~~a~~Al~-~~~~~l~Gr~i~V   72 (75)
T d1hd0a_          38 GRSRGFGFVLFKESESVDKVMD-QKEHKLNGKVIDP   72 (75)
T ss_dssp             TBCCSEEEEEESSHHHHHHHHH-TCCCCBTTBCCEE
T ss_pred             CCcCceEEEEECCHHHHHHHHh-cCCCEECCCEEEe
Confidence            5899999999999999999996 44433 5555554

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.61  E-value=0.039  Score=41.55  Aligned_cols=38  Identities=13%  Similarity=0.329  Sum_probs=31.4

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhhhhcccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKL  169 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~  169 (439)
                      .++||||++.|.+.+.+++++++|.+.. .++.+.++++
T Consensus        47 g~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a   85 (104)
T d1p1ta_          47 GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA   85 (104)
T ss_dssp             TEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred             eccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            3689999999999999999999988766 6666666643

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.96  E-value=0.16  Score=37.91  Aligned_cols=41  Identities=5%  Similarity=0.033  Sum_probs=35.6

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCC
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL  173 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P  173 (439)
                      ..||||.+.|++.+.+.+++++|.+.. .++.+.+.+++...
T Consensus        38 ~~kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s~~~~   79 (109)
T d2adca1          38 NKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN   79 (109)
T ss_dssp             TTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred             cccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence            458999999999999999999999877 78899999876543

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.78  E-value=0.17  Score=35.40  Aligned_cols=31  Identities=29%  Similarity=0.370  Sum_probs=27.0

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhh
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQ  162 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~ar  162 (439)
                      .+++|||++.+.+.+.+++++++|.+.. .||
T Consensus        37 ~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr   68 (72)
T d1x4ea1          37 NKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ   68 (72)
T ss_dssp             CSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred             ccccceeEEEECCHHHHHHHHHHhCCCEECCE
Confidence            4799999999999999999999998765 443

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.63  E-value=0.12  Score=39.07  Aligned_cols=38  Identities=8%  Similarity=-0.087  Sum_probs=33.7

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH-Hhhhhhccccc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE  170 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~  170 (439)
                      +++|||++.|++..-+.+++++|.+.. .++.+.+.++.
T Consensus        44 ~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~   82 (114)
T d2f9da1          44 ETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYN   82 (114)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            789999999999999999999999877 78888877654

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.25  E-value=0.078  Score=38.30  Aligned_cols=32  Identities=9%  Similarity=0.113  Sum_probs=27.1

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-Hhhh
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQM  163 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~ara  163 (439)
                      .++||||++.|.+.+.++++++.|.+.. .+|.
T Consensus        48 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr~   80 (83)
T d2cqca1          48 RRSRGFAFVYFENVDDAKEAKERANGMELDGRR   80 (83)
T ss_dssp             SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred             cccccceEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            3789999999999999999999998765 4443

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.15  E-value=0.14  Score=37.81  Aligned_cols=41  Identities=5%  Similarity=0.028  Sum_probs=36.4

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccC
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE  172 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~  172 (439)
                      .+++|||++.+++.+.+++++++|.+.+ .++.+.+.+++++
T Consensus        37 ~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~~~   78 (88)
T d1wg1a_          37 DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD   78 (88)
T ss_dssp             EGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             eccCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            4679999999999999999999999988 8999999876544

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.12  E-value=0.057  Score=40.51  Aligned_cols=37  Identities=11%  Similarity=0.214  Sum_probs=28.9

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhHHhhhhhcccc
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKL  169 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr~araaNld~~  169 (439)
                      +++||||++.|.+.+.++++|+++. .-.|+.+.+..+
T Consensus        47 g~srG~aFV~f~~~~~a~~al~~~~-~l~Gr~i~v~~a   83 (90)
T d2cqga1          47 GHSKGFGFVRFTEYETQVKVMSQRH-MIDGRWCDCKLP   83 (90)
T ss_dssp             CSEEEEEEEEESSHHHHHHHHHSCE-EETTEEEEEECC
T ss_pred             cccCCEEEEEECCHHHHHHHHhcCC-ccCCEEeEEEeC
Confidence            5899999999999999999998643 226666666643

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=81.15  E-value=0.12  Score=37.52  Aligned_cols=28  Identities=11%  Similarity=0.217  Sum_probs=25.3

Q ss_pred             cCCCCccccccccchHHHHHHHHHHhhH
Q 013598          132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR  159 (439)
Q Consensus       132 nKPrGFG~GK~YdT~iEeKlLeEM~~sr  159 (439)
                      .+|||||++.|++...++++++.|.+..
T Consensus        45 g~~~g~afV~f~~~~~A~~Ai~~l~g~~   72 (85)
T d1b7fa2          45 GRPRGVAFVRYNKREEAQEAISALNNVI   72 (85)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred             ccCceeEEEEECCHHHHHHHHHHHCCCE
Confidence            4899999999999999999999987754

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=80.54  E-value=0.25  Score=35.70  Aligned_cols=38  Identities=5%  Similarity=-0.025  Sum_probs=31.3

Q ss_pred             CCCCccccccccchHHHHHHHHHHhhH--Hhhhhhccccc
Q 013598          133 KPRGFGEGKVYDTSIEDKLLQEIQQSR--EAQMANINKLE  170 (439)
Q Consensus       133 KPrGFG~GK~YdT~iEeKlLeEM~~sr--~araaNld~~~  170 (439)
                      ..||||++.|++.+.+.++++.|++..  .++.+.+++++
T Consensus        43 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~~ak   82 (83)
T d2b0ga1          43 NRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAK   82 (83)
T ss_dssp             TTCSCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEEECC
T ss_pred             ccceeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEEEec
Confidence            468999999999999999999998855  45667776654

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.35  E-value=0.13  Score=38.68  Aligned_cols=43  Identities=2%  Similarity=-0.042  Sum_probs=34.9

Q ss_pred             hcCCCCccccccccchHHHHHHHHHHhhH-HhhhhhccccccCCC
Q 013598          131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL  174 (439)
Q Consensus       131 ~nKPrGFG~GK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~  174 (439)
                      ..+++|||++.|.+.+.++++|+ |.+.. .+|.+.+.+.+..|.
T Consensus        51 ~g~~~G~afVeF~~~~~a~~Al~-~~~~~i~gR~I~V~~s~~~~~   94 (102)
T d1weza_          51 DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTAGT   94 (102)
T ss_dssp             SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCCC
T ss_pred             CCcceEEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEcCCCCC
Confidence            35789999999999999999985 77766 888888886665443