Citrus Sinensis ID: 013611

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNREN
Secondary Structure (PSIPRED)
cEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHccccccccccccccccHHHHcHEEEEcccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MMTLLALITLLsssdcqnnntakscsphhFQIIVFIFSLYLVAigqgghkpctqafgadqfdaqnpqerrakssffnwwyfgisfganSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKskqrnpfarIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALlatpdvsledgklctlEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIgiitfipiydcifvpitryftqnpsgiTMLQRIGAGMLLSSISMVVAALVEIKRLETAkeyglidkpnvtiptsvwWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEatsrdggdswfadNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNREN
Flexible Loop (DISEMBL)
MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFsikskqrnpfarigRVFVVAIKTRKATlasedeaqssQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETakeyglidkpnvtiPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNREN
Low Complexity Region (SEG)
MMtllalitllsssDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCafmvaalvlfllGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLfigigiitfipiYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWllaalsaggllaflyfaKSYNREN
Disordered region (IsUnstruct)
***LLALITLLSSSDC****TAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGA***************SFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKA*************FKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKS*****
Disordered Region (DISOPRED)
MMTLLALITLLSS****************FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQN*Q*RRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKA************QFKFLNKALLAT*******GKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNRE*
Disordered Region (DISEMBL)
MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKA***********QQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNREN
Disordered Region (DISPRO)
MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNREN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNREN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	439	2.2.26 [Sep-21-2011]
Q0WP01	557	Probable peptide/nitrate	yes	no	0.958	0.755	0.587	1e-147
Q0WSZ6	561	Probable peptide/nitrate	no	no	0.972	0.761	0.593	1e-146
Q9SK96	564	Probable peptide/nitrate	no	no	0.949	0.739	0.566	1e-142
Q8VZE2	557	Probable peptide/nitrate	no	no	0.911	0.718	0.604	1e-140
Q9C7U1	555	Probable peptide/nitrate	no	no	0.954	0.754	0.542	1e-133
Q9SK99	565	Probable peptide/nitrate	no	no	0.924	0.718	0.533	1e-129
Q8RX67	538	Probable peptide/nitrate	no	no	0.938	0.765	0.506	1e-121
Q9M1I2	555	Probable peptide/nitrate	no	no	0.908	0.718	0.423	1e-104
Q9M390	570	Peptide transporter PTR1	no	no	0.972	0.749	0.376	3e-94
Q9LFB8	570	Peptide transporter PTR5	no	no	0.936	0.721	0.384	4e-87

>sp|Q0WP01|PTR9_ARATH Probable peptide/nitrate transporter At1g22540 OS=Arabidopsis thaliana GN=At1g22540 PE=2 SV=1

 Score =  523 bits (1347), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/446 (58%), Positives = 337/446 (75%), Gaps = 25/446 (5%)

Query: 1   MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQ 60
           ++TL A+I     SDC+ +N   SCSP  FQ+I F  +LYLVA+ QGGHKPC QAFGADQ
Sbjct: 118 VLTLSAMI----PSDCKVSNLLSSCSPR-FQVITFFSALYLVALAQGGHKPCVQAFGADQ 172

Query: 61  FDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVL 120
           FD + P+E +AKSSFFNWWYFG+ FG  +T+ V+ YIQDNL+WALGFGIPC  MV ALV+
Sbjct: 173 FDEKEPEECKAKSSFFNWWYFGMCFGTLTTLWVLNYIQDNLSWALGFGIPCIAMVVALVV 232

Query: 121 FLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKF-------- 172
            LLGT TYRFSI+ + ++PF RIG V+V A+K    ++++ D A + ++           
Sbjct: 233 LLLGTCTYRFSIRREDQSPFVRIGNVYVAAVKNW--SVSALDVAAAEERLGLVSCSSSQQ 290

Query: 173 ---LNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQ 229
              LNKAL+A      ++G  C+++++EEAK++LRL PIW TCLVYA+VFAQ  TFFTKQ
Sbjct: 291 FSFLNKALVA------KNGS-CSIDELEEAKSVLRLAPIWLTCLVYAVVFAQSPTFFTKQ 343

Query: 230 GATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGA 289
           GATM+R+IT   KI  A+LQ FI + I+ FIPIYD + +PI R FT  P GITMLQRIG 
Sbjct: 344 GATMERSITPGYKISPATLQSFISLSIVIFIPIYDRVLIPIARSFTHKPGGITMLQRIGT 403

Query: 290 GMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG 349
           G+ LS ++MVVAALVE+KRL+TA +YGL+D P+ T+P SVWWL+PQY+L GI DVF +VG
Sbjct: 404 GIFLSFLAMVVAALVEMKRLKTAADYGLVDSPDATVPMSVWWLVPQYVLFGITDVFAMVG 463

Query: 350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAH 409
           LQEFFYDQ+P EL+S GL++Y+S+ G+G FLSS ++SII +ATS+ G  SWFA+NLN+AH
Sbjct: 464 LQEFFYDQVPNELRSVGLALYLSIFGIGNFLSSFMISIIEKATSQSGQASWFANNLNQAH 523

Query: 410 LDYFYWLLAALSAGGLLAFLYFAKSY 435
           LDYFYWLLA LS  GL ++LY AKSY
Sbjct: 524 LDYFYWLLACLSFIGLASYLYVAKSY 549

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WSZ6|PTR23_ARATH Probable peptide/nitrate transporter At1g72125 OS=Arabidopsis thaliana GN=At1g72125 PE=2 SV=2

 Score =  517 bits (1332), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/443 (59%), Positives = 323/443 (72%), Gaps = 16/443 (3%)

Query: 5   LALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQ 64
           LA +TL  S+    NNT  + SP  F   +F FSLYLVAIGQ GHKPC QAFGADQFD +
Sbjct: 115 LAFLTL--SAFLIPNNTEVTSSPSSFLNALFFFSLYLVAIGQSGHKPCVQAFGADQFDEK 172

Query: 65  NPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLG 124
           NPQE   +SSFFNWWY  +  G    ILVV+YIQ+N++WALGFGIPC FMV +LVLF+LG
Sbjct: 173 NPQENSDRSSFFNWWYLSMCAGIGLAILVVVYIQENVSWALGFGIPCVFMVISLVLFVLG 232

Query: 125 TKTYRFSIKSKQR---NPFARIGRVFVVAIKTR--------KATLASEDEAQSS-QQFKF 172
            K+YRFS K++Q    NPF RIGRVF VA K +        K  L   + +Q S ++  F
Sbjct: 233 RKSYRFS-KTRQEEETNPFTRIGRVFFVAFKNQRLNSSDLCKVELIEANRSQESPEELSF 291

Query: 173 LNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGAT 232
           LNKALL  P+ S E    C   DVE+A AL+RLIP+W T L YAI FAQY TFFTKQG T
Sbjct: 292 LNKALLV-PNDSDEGEVACKSRDVEDATALVRLIPVWLTTLAYAIPFAQYMTFFTKQGVT 350

Query: 233 MDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGML 292
           M+RTI   ++IP ASLQ+ I I I+ F+PIYD + VPI R  T++P GIT L+RIG GM+
Sbjct: 351 MERTIFPGVEIPPASLQVLISISIVLFVPIYDRVLVPIGRSITKDPCGITTLKRIGTGMV 410

Query: 293 LSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQE 352
           L++++MVVAALVE KRLETAKEYGLID+P  T+P S+WWL PQY+L G+ADV T+VG+QE
Sbjct: 411 LATLTMVVAALVESKRLETAKEYGLIDQPKTTLPMSIWWLFPQYMLLGLADVHTLVGMQE 470

Query: 353 FFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDY 412
           FFY Q+P EL+S GL+IY+S +GVG  LSS+L+ +I+ AT  D G+SWF  NLNRAHLDY
Sbjct: 471 FFYSQVPTELRSLGLAIYLSAMGVGSLLSSLLIYLIDLATGGDAGNSWFNSNLNRAHLDY 530

Query: 413 FYWLLAALSAGGLLAFLYFAKSY 435
           FYWLLA +SA G   FL+ +KSY
Sbjct: 531 FYWLLAVVSAVGFFTFLFISKSY 553

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK96|PTR10_ARATH Probable peptide/nitrate transporter At1g22550 OS=Arabidopsis thaliana GN=At1g22550 PE=2 SV=1

 Score =  503 bits (1296), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/431 (56%), Positives = 311/431 (72%), Gaps = 14/431 (3%)

Query: 14  SDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 73
           S+ + +N   S  P  +  I+F  SLYLVAIGQGGHKPC QAFGADQFD  +P+ER ++ 
Sbjct: 131 SEQRQHNRNASAKPFFWVNILFFCSLYLVAIGQGGHKPCVQAFGADQFDVGDPKERISRG 190

Query: 74  SFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIK 133
           SFFNWW+  +S G   +I+VV+Y+QDN+NWALGFGIPC FMV AL LFL G KTYR+   
Sbjct: 191 SFFNWWFLSLSAGITLSIIVVVYVQDNVNWALGFGIPCLFMVMALALFLFGRKTYRYPRG 250

Query: 134 SKQ--RNPFARIGRVFVVAIKTRKATLASEDEAQSSQ------QFKFLNKALLATPDVSL 185
            ++   N FARIGRVF+VA K RK  L    + +         Q +FL KALL       
Sbjct: 251 DREGKNNAFARIGRVFLVAFKNRKLKLTHSGQLEVGSYKKCKGQLEFLAKALLPG----- 305

Query: 186 EDG-KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIP 244
           E G + C+  DVE+A AL+RLIPIW T +V  I +AQY TFFTKQG T+DR I    +IP
Sbjct: 306 EGGVEPCSSRDVEDAMALVRLIPIWITSVVSTIPYAQYATFFTKQGVTVDRKILPGFEIP 365

Query: 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALV 304
            AS Q  IG+ I   +P Y+ +F+P+ R  T+ PSGITMLQRIGAGM+LSS++MVVAALV
Sbjct: 366 PASFQALIGLSIFISVPTYERVFLPLARLITKKPSGITMLQRIGAGMVLSSLNMVVAALV 425

Query: 305 EIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKS 364
           E+KRLETAKE+GL+D+P+ TIP S+WW +PQYLL G+ DVF++VG QEFFYDQ+P EL+S
Sbjct: 426 EMKRLETAKEHGLVDRPDATIPMSIWWFVPQYLLLGMIDVFSLVGTQEFFYDQVPTELRS 485

Query: 365 FGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGG 424
            GL++ +S +G+  FLS  L+++IN AT ++GGDSWF  NLNRAH+DYFYWLLAA +A G
Sbjct: 486 IGLALSLSAMGLASFLSGFLITVINWATGKNGGDSWFNTNLNRAHVDYFYWLLAAFTAIG 545

Query: 425 LLAFLYFAKSY 435
            LAFL  ++ Y
Sbjct: 546 FLAFLLLSRLY 556

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZE2|PTR22_ARATH Probable peptide/nitrate transporter At1g72120 OS=Arabidopsis thaliana GN=At1g72120 PE=2 SV=2

 Score =  498 bits (1281), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/412 (60%), Positives = 311/412 (75%), Gaps = 12/412 (2%)

Query: 33  IVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTIL 92
           ++F FSLYLVAIGQ GHKPC QAFGADQFD ++ QE+  +SSFFNWWY  +S G    IL
Sbjct: 141 VLFFFSLYLVAIGQSGHKPCVQAFGADQFDEKDSQEKSDRSSFFNWWYLSLSAGICFAIL 200

Query: 93  VVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQR--NPFARIGRVFVVA 150
           VV+YIQ+  +WA GFGIPC FMV +LVLF+ G + YR+S +  +   NPF RIGRVF VA
Sbjct: 201 VVVYIQEEFSWAFGFGIPCVFMVISLVLFVSGRRIYRYSKRRHEEEINPFTRIGRVFFVA 260

Query: 151 IKTRKATLASED------EAQSS-QQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALL 203
           +K ++  L+S D      EA +S ++  F NKALL  P+ S +        DVE+A AL+
Sbjct: 261 LKNQR--LSSSDLCKVELEANTSPEKQSFFNKALL-VPNDSSQGENASKSSDVEDATALI 317

Query: 204 RLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIY 263
           RLIP+W T L YAI +AQY TFFTKQG TMDRTI   +KIP ASLQ+FIGI I+ F+PIY
Sbjct: 318 RLIPVWFTTLAYAIPYAQYMTFFTKQGVTMDRTILPGVKIPPASLQVFIGISIVLFVPIY 377

Query: 264 DCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV 323
           D +FVPI R  T+ P GIT L+RIG G++LS+I+MV+AALVE KRLETAKE+GLID+P  
Sbjct: 378 DRVFVPIARLITKEPCGITTLKRIGTGIVLSTITMVIAALVEFKRLETAKEHGLIDQPEA 437

Query: 324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSI 383
           T+P S+WWLIPQYLL G+ADV+T+VG+QEFFY Q+P EL+S GL++Y+S LGVG  LSS+
Sbjct: 438 TLPMSIWWLIPQYLLLGLADVYTLVGMQEFFYSQVPTELRSIGLALYLSALGVGSLLSSL 497

Query: 384 LVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 435
           L+S+I+ AT  D G+SWF  NLNRAHLDYFYWLLA +SA G   FL+ +KSY
Sbjct: 498 LISLIDLATGGDAGNSWFNSNLNRAHLDYFYWLLAIVSAVGFFTFLFISKSY 549

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7U1|PTR25_ARATH Probable peptide/nitrate transporter At1g72140 OS=Arabidopsis thaliana GN=At1g72140 PE=2 SV=1

 Score =  474 bits (1219), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/442 (54%), Positives = 324/442 (73%), Gaps = 23/442 (5%)

Query: 5   LALITLLSS--SDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFD 62
           L L+T  ++  S C +  T +SC     ++I+F  +LYL+A+G+GG K C +AFGADQFD
Sbjct: 120 LGLLTFSATIPSLCNDQETRESCV-SQVKVIIFFCALYLIALGEGGFKVCLRAFGADQFD 178

Query: 63  AQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFL 122
            Q+P E +AKSS+FNW YF IS G  +T LV  Y+Q+NL+WALG+ IPC  M+ AL LFL
Sbjct: 179 EQDPNESKAKSSYFNWLYFAISIGILTTRLVTNYVQENLSWALGYAIPCLSMMLALFLFL 238

Query: 123 LGTKTYRFSIKSKQR------NPFARIGRVFVVAIKTRKATLASED---EAQSSQQFKFL 173
           LG KTYRFS   + R      NPF RIGRVFV A + R+ T +        +S+++F+FL
Sbjct: 239 LGIKTYRFSTGGEGRQGKKHDNPFVRIGRVFVAAARNRRQTPSDTCLLLPNESTKKFRFL 298

Query: 174 NKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATM 233
           ++A+++           C   +VEEAKA+L LIPIW   LV+ IVFAQ  TFFTKQG+TM
Sbjct: 299 DRAVIS-----------CDSYEVEEAKAVLSLIPIWLCSLVFGIVFAQSPTFFTKQGSTM 347

Query: 234 DRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLL 293
           DR+I+ ++++PAA+LQ FI + I+ FIPIYD +FVPI R  T+ P+GIT LQRI  G+ L
Sbjct: 348 DRSISSTLQVPAATLQCFISLAILVFIPIYDRLFVPIARSITRKPAGITTLQRISTGIFL 407

Query: 294 SSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEF 353
           S ISMV+AALVE+KRL+TA+++GL+D P  T+P SV WLIPQY+L G++DVFT+VGLQEF
Sbjct: 408 SIISMVIAALVEMKRLKTARDHGLVDSPKATVPMSVCWLIPQYILFGVSDVFTMVGLQEF 467

Query: 354 FYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYF 413
           FY ++P +L+S GL++Y+S++G+G FLSS +VS+I EATS+ G  SWF++NLN+AHLDYF
Sbjct: 468 FYGEVPPQLRSMGLALYLSIIGIGNFLSSFMVSVIEEATSQSGQVSWFSNNLNQAHLDYF 527

Query: 414 YWLLAALSAGGLLAFLYFAKSY 435
           YWLLA LS+   +  +YFAKSY
Sbjct: 528 YWLLACLSSLAFIFTVYFAKSY 549

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK99|PTR11_ARATH Probable peptide/nitrate transporter At1g22570 OS=Arabidopsis thaliana GN=At1g22570 PE=2 SV=1

 Score =  461 bits (1187), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/427 (53%), Positives = 303/427 (70%), Gaps = 21/427 (4%)

Query: 3   TLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFD 62
           TL A + ++  S  +N+ +AK   P  +   +F  SLYLVAIGQGGHKPC QAFGADQFD
Sbjct: 120 TLSASLIIMGLSKQRNDASAK---PSIWVNTLFFCSLYLVAIGQGGHKPCVQAFGADQFD 176

Query: 63  AQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFL 122
           A++P+E  A+ SFFNWW+  +S G + +I+VV Y+Q+N+NWA GFGIPC FMV AL +FL
Sbjct: 177 AEDPKEVIARGSFFNWWFLSLSAGISISIIVVAYVQENVNWAFGFGIPCLFMVMALAIFL 236

Query: 123 LGTKTYRFSIKSKQR----NPFARIGRVFVVAIKTRKATLASE---------DEAQSSQQ 169
           LG K YR+     +     N FARIGRVFV+A K RK  L            ++ QS ++
Sbjct: 237 LGRKIYRYPKGHHEEVNSSNTFARIGRVFVIAFKNRKLRLEHSSLELDQGLLEDGQSEKR 296

Query: 170 FKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQ 229
              LN   LA   +S E  + C+  DV++AKAL+RLIPIW T +V  I +AQY TFFTKQ
Sbjct: 297 KDRLN--FLAKAMISREGVEPCSGRDVDDAKALVRLIPIWITYVVSTIPYAQYITFFTKQ 354

Query: 230 GATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGA 289
           G T+DR I   ++IPAASL  F+G+ I+  +P+Y+ +F+PI R  T+ P GITMLQRIGA
Sbjct: 355 GVTVDRRILPGVEIPAASLLSFVGVSILISVPLYERVFLPIARKITKKPFGITMLQRIGA 414

Query: 290 GMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG 349
           GM+LS  +M++AALVE KRL+ A+E+GL+DKP+VT+P S+WW +PQYLL G+ D+F++VG
Sbjct: 415 GMVLSVFNMMLAALVESKRLKIAREHGLVDKPDVTVPMSIWWFVPQYLLLGMIDLFSMVG 474

Query: 350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAH 409
            QEFFYDQ+P EL+S GLS+ +S +G+  FLS  L+S+I+ AT +DG   WF  NLNRAH
Sbjct: 475 TQEFFYDQVPTELRSIGLSLSLSAMGLSSFLSGFLISLIDWATGKDG---WFNSNLNRAH 531

Query: 410 LDYFYWL 416
           +DYFYWL
Sbjct: 532 VDYFYWL 538

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX67|PTR24_ARATH Probable peptide/nitrate transporter At1g72130 OS=Arabidopsis thaliana GN=At1g72130 PE=2 SV=1

 Score =  435 bits (1119), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/452 (50%), Positives = 312/452 (69%), Gaps = 40/452 (8%)

Query: 2   MTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQF 61
           + LL+  T++ S   +++N          Q  +F FSLYLVAIGQGG+ PC + FGADQF
Sbjct: 111 LGLLSFSTMIPSHQSKDSN--------QLQETIFFFSLYLVAIGQGGYNPCIKVFGADQF 162

Query: 62  DAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLF 121
           D  + +E R KSSFFNW  FG      +T LV  YIQ+NL+W+LGFGIP   M+ +L LF
Sbjct: 163 DGNDHKEARDKSSFFNWLMFGNCISILTTRLVSTYIQENLSWSLGFGIPSVSMLLSLFLF 222

Query: 122 LLGTKTYRFSI-KSKQRNPFARIGRVFVVAIKTRKA-----TLASEDEA------QSSQQ 169
           LLGT +YRFS  +  ++NPFARI RVF+ A+K R+        A+ +E       QSS+Q
Sbjct: 223 LLGTTSYRFSTERVGKKNPFARISRVFMEALKNRRQPDLDIANANANETLLLLAHQSSKQ 282

Query: 170 FKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQ 229
           F+FL++A ++           C L ++EEAKA+LRLIPIW T +VY IV AQ  TFFTKQ
Sbjct: 283 FRFLDRAAIS-----------CELAEIEEAKAVLRLIPIWITSVVYTIVHAQSPTFFTKQ 331

Query: 230 GATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGA 289
           GATMDR+I+  + +PAA+LQ FI + ++ FIPIYD + VP  R FTQN SGIT LQRIG 
Sbjct: 332 GATMDRSISPGLLVPAATLQSFINLSVVVFIPIYDRLLVPFARSFTQNSSGITTLQRIGT 391

Query: 290 GMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG 349
           G+ LS ++MV+AALVE KRL+ A++        ++IP SVWWLIPQY++ G++D+FT+VG
Sbjct: 392 GIFLSILAMVLAALVETKRLQAARD-------ELSIPMSVWWLIPQYVIFGVSDMFTMVG 444

Query: 350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAH 409
           LQEFFY Q+P EL+S G+++ +S+ G G +LSS ++S+I++ T++ G  SWF ++L++AH
Sbjct: 445 LQEFFYGQVPSELRSVGMALNLSIYGAGNYLSSFMISVIDKITNQYGQRSWFDNDLDQAH 504

Query: 410 LDYFYWLLAALSAGGLLAFLYFAKS--YNREN 439
           LDYFYWLLA L   G   +L+FAKS  Y+R N
Sbjct: 505 LDYFYWLLACLGFIGFAFYLWFAKSYVYSRSN 536

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1

 Score =  379 bits (974), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/427 (42%), Positives = 272/427 (63%), Gaps = 28/427 (6%)

Query: 34  VFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILV 93
           VF  +LY++A+G+GGHKPC   F ADQF   N +E+ AK+SFFN+WY  I   ++  +L 
Sbjct: 116 VFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASSIAVLA 175

Query: 94  VIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKT 153
           +I+IQ+ ++W+LGF I    +V A+V+FL+G   YR  +     +PF R+ +V V A+K 
Sbjct: 176 LIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVG--SPFTRVAQVMVAALKK 233

Query: 154 RKAT---------LASEDEAQ-------------SSQQFKFLNKALLATP---DVSLEDG 188
            + +            EDE +              + QF+FL+KA +      + +    
Sbjct: 234 WRLSSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEIDHNKNRNPW 293

Query: 189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASL 248
           +LCT+  VEE K +LRLIPIW + +++     Q  TFF KQG+ MDRTI     IP A+ 
Sbjct: 294 RLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAF 353

Query: 249 QLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKR 308
           Q  +G+ I+  IP+YD +FVP+ R  T + SGIT LQRIG G+ +++ +MV+  LVE KR
Sbjct: 354 QSIVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVEAKR 413

Query: 309 LETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLS 368
           L+ A+++GLID P   +P S  WL+PQY+L GI DVFTIVG+QE FYDQ+P+ ++S G +
Sbjct: 414 LKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAA 473

Query: 369 IYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAF 428
           I++SV+GVG F+S+ ++S + +  S+  G+ W  +NLNRAHLDY+YW++A+L+A  L  +
Sbjct: 474 IFISVVGVGSFVSTGIISTV-QTISKSHGEEWLVNNLNRAHLDYYYWIIASLNAVSLCFY 532

Query: 429 LYFAKSY 435
           L+ A  +
Sbjct: 533 LFIANHF 539

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  345 bits (886), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 172/457 (37%), Positives = 277/457 (60%), Gaps = 30/457 (6%)

Query: 1   MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQ 60
           ++TL A +  L   +C     A +C P+  Q  VF  +LY++A+G GG KPC  +FGADQ
Sbjct: 112 LLTLSASVPGLKPGNCN----ADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQ 167

Query: 61  FDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVL 120
           FD  +  E+  KSSFFNW+YF I+ GA     V+++IQ N+ W  GFG+P   MV A+  
Sbjct: 168 FDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCF 227

Query: 121 FLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATL---------ASEDEAQ------ 165
           F  G++ YR  ++    +P  RI +V V A +     +          ++DE+       
Sbjct: 228 FFFGSRFYR--LQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRK 285

Query: 166 --SSQQFKFLNKALLATPDVSLEDG-----KLCTLEDVEEAKALLRLIPIWATCLVYAIV 218
              +   KF +KA + +   S++DG     +LC++  VEE K+++ L+P+WAT +V+A V
Sbjct: 286 LVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATV 345

Query: 219 FAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNP 278
           ++Q +T F  QG TMD+ + ++ +IP+ASL LF  + ++ + P+YD   +P+ R FT+N 
Sbjct: 346 YSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNE 405

Query: 279 SGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLL 338
            G T LQR+G G+++S  +M+ A ++E+ RL+  K +   D+  + +  S++W IPQYLL
Sbjct: 406 RGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHM--SIFWQIPQYLL 463

Query: 339 CGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGD 398
            G A+VFT +G  EFFYDQ P  ++S   ++ ++ + +G +LS++LV+++ + T ++G  
Sbjct: 464 IGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKP 523

Query: 399 SWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 435
            W  DNLNR HLDYF++LLA LS    L +L+ +K Y
Sbjct: 524 GWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRY 560

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  322 bits (824), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 168/437 (38%), Positives = 256/437 (58%), Gaps = 26/437 (5%)

Query: 21  TAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWY 80
           + ++C     Q  +   +LYL+A+G GG KPC  +FGADQFD  + +E+ +KSSFFNW+Y
Sbjct: 128 SGETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFY 187

Query: 81  FGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPF 140
           F I+ GA     V+++IQ N+ W  G G+P   M  A+V F  G+  YR  ++    +P 
Sbjct: 188 FVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR--LQKPGGSPL 245

Query: 141 ARIGRVFVVAIKTRKATLASED-------EAQSS----------QQFKFLNKALLATPD- 182
            R+ +V V + +  K  +  ++       +A+SS          +   F +KA + T   
Sbjct: 246 TRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESD 305

Query: 183 ----VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTIT 238
                     KLCT+  VEE KAL+RL+PIWAT +V+A V++Q  T F  QG T+D+ + 
Sbjct: 306 NKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMG 365

Query: 239 RSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISM 298
            + KIP+ASL LF  + ++ + P+YD + VP  R +T +  G T LQRIG G+++S  SM
Sbjct: 366 PNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSM 425

Query: 299 VVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQI 358
           V A ++E+ RL   + + L ++   TIP +++W +PQY L G A+VFT +G  EFFYDQ 
Sbjct: 426 VSAGILEVARLNYVQTHNLYNEE--TIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQA 483

Query: 359 PKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLA 418
           P  ++S   ++ ++ +  G +LS+ LV+++ + T   G   W A NLN  HLDYF+WLLA
Sbjct: 484 PDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLA 543

Query: 419 ALSAGGLLAFLYFAKSY 435
            LS    L +L+ AK Y
Sbjct: 544 GLSFLNFLVYLWIAKWY 560

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
147836333	584	hypothetical protein VITISV_011767 [Viti	0.988	0.743	0.653	1e-169
359493466	572	PREDICTED: probable peptide/nitrate tran	0.988	0.758	0.648	1e-168
296089515	755	unnamed protein product [Vitis vinifera]	0.988	0.574	0.648	1e-168
359493470	572	PREDICTED: LOW QUALITY PROTEIN: probable	0.977	0.75	0.656	1e-167
147826923	572	hypothetical protein VITISV_000973 [Viti	0.977	0.75	0.656	1e-167
224146337	596	predicted protein [Populus trichocarpa]	0.963	0.709	0.659	1e-166
359493461	1115	PREDICTED: uncharacterized protein LOC10	0.977	0.384	0.646	1e-165
225460434	572	PREDICTED: probable peptide/nitrate tran	0.979	0.751	0.632	1e-162
224135651	557	proton-dependent oligopeptide transporte	0.968	0.763	0.627	1e-161
296089506	2163	unnamed protein product [Vitis vinifera]	0.956	0.194	0.644	1e-161

>gi|147836333|emb|CAN75422.1| hypothetical protein VITISV_011767 [Vitis vinifera]

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 290/444 (65%), Positives = 353/444 (79%), Gaps = 10/444 (2%)

Query: 1   MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQ 60
           ++TL A++   S SDCQ +N   SCSP   QII+F FSLYLVA+GQGGHKPC QAFGADQ
Sbjct: 134 LLTLSAVLPSPSPSDCQKSNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCNQAFGADQ 193

Query: 61  FDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVL 120
           FD +NP+E +AKSSFFNWWYFG+ FG      V+ YIQ+NLNW LGFGIPC  M+AAL+L
Sbjct: 194 FDGRNPEECKAKSSFFNWWYFGLCFGTVINYSVLSYIQENLNWGLGFGIPCVVMIAALLL 253

Query: 121 FLLGTKTYRFSIKSKQRNPFARIGRVFVVAIK---TRKATLASEDEA------QSSQQFK 171
           FLLGT+TYR+S+K+ +++PF RIG+VF+ A K   T  + +A+E+ A      Q SQQFK
Sbjct: 254 FLLGTRTYRYSVKTDEKSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQXSQQFK 313

Query: 172 FLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGA 231
            LNKALLA PD S  +G+ CT++DVEEAKA+LRL PIW TCLVYAI FAQ +TFFTKQG 
Sbjct: 314 CLNKALLA-PDGSKGNGRQCTIDDVEEAKAVLRLFPIWTTCLVYAIAFAQSSTFFTKQGI 372

Query: 232 TMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGM 291
           TMDR+I   I IPA+SLQ FIG+ I+  +PIYD I VPI R  T+ PSGITMLQRIG GM
Sbjct: 373 TMDRSIGWGIDIPASSLQGFIGLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRIGTGM 432

Query: 292 LLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQ 351
            LS+ISMVVAALVE+KRL+TA+E+GL+D PNVT+P SVWWL+PQY+L G++DVFTIVGLQ
Sbjct: 433 FLSAISMVVAALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVFTIVGLQ 492

Query: 352 EFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLD 411
           EFFYDQ+P EL+S G+++Y+S+LGVG FLSS L+S I +AT  DG  SWF DNLNRAHLD
Sbjct: 493 EFFYDQVPTELRSVGIALYLSILGVGNFLSSFLISAIEKATGGDGQHSWFNDNLNRAHLD 552

Query: 412 YFYWLLAALSAGGLLAFLYFAKSY 435
            +YW+LA LSA GL  +LYFAKSY
Sbjct: 553 XYYWVLAGLSAVGLSLYLYFAKSY 576

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493466|ref|XP_003634604.1| PREDICTED: probable peptide/nitrate transporter At1g22540-like [Vitis vinifera]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 288/444 (64%), Positives = 352/444 (79%), Gaps = 10/444 (2%)

Query: 1   MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQ 60
           ++TL A++   S SDCQ +N   SCSP   QII+F FSLYLVA+GQGGHKPC QAFGADQ
Sbjct: 122 LLTLSAVLPSPSPSDCQKSNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCNQAFGADQ 181

Query: 61  FDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVL 120
           FD +NP+E +AKSSFFNWWYFG+ FG      V+ YIQ+NLNW LGFGIPC  M+AAL+L
Sbjct: 182 FDGRNPEECKAKSSFFNWWYFGLCFGTVINYSVLSYIQENLNWGLGFGIPCVVMIAALLL 241

Query: 121 FLLGTKTYRFSIKSKQRNPFARIGRVFVVAIK---TRKATLASEDEA------QSSQQFK 171
           FLLGT+TYR+S+K+ +++PF RIG+VF+ A K   T  + +A+E+ A      Q SQQFK
Sbjct: 242 FLLGTRTYRYSVKTDEKSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQVSQQFK 301

Query: 172 FLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGA 231
            LNKALLA PD S  +G+ CT+++VEEAKA+LRL PIW TCLVYAI FAQ +TFFTKQG 
Sbjct: 302 CLNKALLA-PDGSKGNGRQCTIDNVEEAKAVLRLFPIWTTCLVYAIAFAQSSTFFTKQGI 360

Query: 232 TMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGM 291
           TMDR+I   I IPA+SLQ FIG+ I+  +PIYD I VPI R  T+ PSGITMLQRIG GM
Sbjct: 361 TMDRSIGWGIDIPASSLQGFIGLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRIGTGM 420

Query: 292 LLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQ 351
            LS+ISMVVAALVE+KRL+TA+E+GL+D PNVT+P SVWWL+PQY+L G++DV TIVGLQ
Sbjct: 421 FLSAISMVVAALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVVTIVGLQ 480

Query: 352 EFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLD 411
           EFFYDQ+P EL+S G+++Y+S+LGVG FLSS L+S I +AT  DG  SWF DNLNRAHLD
Sbjct: 481 EFFYDQVPTELRSVGIALYLSILGVGNFLSSFLISAIEKATGGDGQHSWFNDNLNRAHLD 540

Query: 412 YFYWLLAALSAGGLLAFLYFAKSY 435
            +YW+LA LSA GL  +LYFAKSY
Sbjct: 541 NYYWVLAGLSAVGLSLYLYFAKSY 564

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089515|emb|CBI39334.3| unnamed protein product [Vitis vinifera]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 288/444 (64%), Positives = 352/444 (79%), Gaps = 10/444 (2%)

Query: 1   MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQ 60
           ++TL A++   S SDCQ +N   SCSP   QII+F FSLYLVA+GQGGHKPC QAFGADQ
Sbjct: 122 LLTLSAVLPSPSPSDCQKSNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCNQAFGADQ 181

Query: 61  FDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVL 120
           FD +NP+E +AKSSFFNWWYFG+ FG      V+ YIQ+NLNW LGFGIPC  M+AAL+L
Sbjct: 182 FDGRNPEECKAKSSFFNWWYFGLCFGTVINYSVLSYIQENLNWGLGFGIPCVVMIAALLL 241

Query: 121 FLLGTKTYRFSIKSKQRNPFARIGRVFVVAIK---TRKATLASEDEA------QSSQQFK 171
           FLLGT+TYR+S+K+ +++PF RIG+VF+ A K   T  + +A+E+ A      Q SQQFK
Sbjct: 242 FLLGTRTYRYSVKTDEKSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQVSQQFK 301

Query: 172 FLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGA 231
            LNKALLA PD S  +G+ CT+++VEEAKA+LRL PIW TCLVYAI FAQ +TFFTKQG 
Sbjct: 302 CLNKALLA-PDGSKGNGRQCTIDNVEEAKAVLRLFPIWTTCLVYAIAFAQSSTFFTKQGI 360

Query: 232 TMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGM 291
           TMDR+I   I IPA+SLQ FIG+ I+  +PIYD I VPI R  T+ PSGITMLQRIG GM
Sbjct: 361 TMDRSIGWGIDIPASSLQGFIGLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRIGTGM 420

Query: 292 LLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQ 351
            LS+ISMVVAALVE+KRL+TA+E+GL+D PNVT+P SVWWL+PQY+L G++DV TIVGLQ
Sbjct: 421 FLSAISMVVAALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVVTIVGLQ 480

Query: 352 EFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLD 411
           EFFYDQ+P EL+S G+++Y+S+LGVG FLSS L+S I +AT  DG  SWF DNLNRAHLD
Sbjct: 481 EFFYDQVPTELRSVGIALYLSILGVGNFLSSFLISAIEKATGGDGQHSWFNDNLNRAHLD 540

Query: 412 YFYWLLAALSAGGLLAFLYFAKSY 435
            +YW+LA LSA GL  +LYFAKSY
Sbjct: 541 NYYWVLAGLSAVGLSLYLYFAKSY 564

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493470|ref|XP_003634606.1| PREDICTED: LOW QUALITY PROTEIN: probable peptide/nitrate transporter At1g22540-like [Vitis vinifera]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 288/439 (65%), Positives = 348/439 (79%), Gaps = 10/439 (2%)

Query: 6   ALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQN 65
           A++   S SDC+ +N   SCSP   QII+F FSLYLVA+GQGGHKPCTQAFGADQFD +N
Sbjct: 127 AVLPSPSPSDCKESNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCTQAFGADQFDGRN 186

Query: 66  PQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGT 125
           P+E +AKSSFFNWWYFG+ FG   T  V+ YIQ+NLNW LGFGIPC  M+AAL+LFLLGT
Sbjct: 187 PEECKAKSSFFNWWYFGLCFGTVITYSVLTYIQENLNWGLGFGIPCVVMIAALLLFLLGT 246

Query: 126 KTYRFSIKSKQRNPFARIGRVFVVAIK---TRKATLASEDEA------QSSQQFKFLNKA 176
           +TYR+S+K  +R+PF RIG+VF+ A K   T  + +A+E+ A      Q SQQFK LNKA
Sbjct: 247 RTYRYSVKKDERSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQLSQQFKCLNKA 306

Query: 177 LLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRT 236
           LLA PD S  +G+ CT++DVEEAKA+LRL PIWATCLVYAIVFAQ +TFFTKQG TMDR+
Sbjct: 307 LLA-PDGSKGNGRQCTIDDVEEAKAVLRLFPIWATCLVYAIVFAQSSTFFTKQGITMDRS 365

Query: 237 ITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSI 296
           I   I IPA+SLQ FI + I+  +PIYD I VPI R  T+ PSGITMLQRIG GM LS+I
Sbjct: 366 IGWGIDIPASSLQAFISLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRIGTGMFLSAI 425

Query: 297 SMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYD 356
           SMVVAALVE+KRL+TA+E+GL+D PNVT+P SVWWL+PQY+L G++DVFT+VGLQEFFYD
Sbjct: 426 SMVVAALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVFTMVGLQEFFYD 485

Query: 357 QIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWL 416
           Q+P EL+S G+++Y+S+LGVG FLSS L+S I +AT  DG  S F DNLNRAHLDY+YW 
Sbjct: 486 QVPIELRSVGIALYLSILGVGSFLSSFLISAIEKATGGDGQHSXFNDNLNRAHLDYYYWF 545

Query: 417 LAALSAGGLLAFLYFAKSY 435
           LA LS  GL  + YFAKSY
Sbjct: 546 LAGLSVVGLSLYRYFAKSY 564

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826923|emb|CAN71099.1| hypothetical protein VITISV_000973 [Vitis vinifera]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 288/439 (65%), Positives = 348/439 (79%), Gaps = 10/439 (2%)

Query: 6   ALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQN 65
           A++   S SDC+ +N   SCSP   QII+F FSLYLVA+GQGGHKPCTQAFGADQFD +N
Sbjct: 127 AVLPSPSPSDCKESNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCTQAFGADQFDGRN 186

Query: 66  PQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGT 125
           P+E +AKSSFFNWWYFG+ FG   T  V+ YIQ+NLNW LGFGIPC  M+AAL+LFLLGT
Sbjct: 187 PEECKAKSSFFNWWYFGLCFGTVITYSVLXYIQENLNWGLGFGIPCVVMIAALLLFLLGT 246

Query: 126 KTYRFSIKSKQRNPFARIGRVFVVAIK---TRKATLASEDEA------QSSQQFKFLNKA 176
           +TYR+S+K  +R+PF RIG+VF+ A K   T  + +A+E+ A      Q SQQFK LNKA
Sbjct: 247 RTYRYSVKKDERSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQLSQQFKCLNKA 306

Query: 177 LLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRT 236
           LLA PD S  +G+ CT++DVEEAKA+LRL PIWATCLVYAIVFAQ +TFFTKQG TMDR+
Sbjct: 307 LLA-PDGSKGNGRQCTIDDVEEAKAVLRLFPIWATCLVYAIVFAQSSTFFTKQGITMDRS 365

Query: 237 ITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSI 296
           I   I IPA+SLQ FI + I+  +PIYD I VPI R  T+ PSGITMLQRIG GM LS+I
Sbjct: 366 IGWGIDIPASSLQAFISLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRIGTGMFLSAI 425

Query: 297 SMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYD 356
           SMVVAALVE+KRL+TA+E+GL+D PNVT+P SVWWL+PQY+L G++DVFT+VGLQEFFYD
Sbjct: 426 SMVVAALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVFTMVGLQEFFYD 485

Query: 357 QIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWL 416
           Q+P EL+S G+++Y+S+LGVG FLSS L+S I +AT  DG  S F DNLNRAHLDY+YW 
Sbjct: 486 QVPIELRSVGIALYLSILGVGSFLSSFLISAIEKATGGDGQHSXFNDNLNRAHLDYYYWF 545

Query: 417 LAALSAGGLLAFLYFAKSY 435
           LA LS  GL  + YFAKSY
Sbjct: 546 LAGLSVVGLSLYRYFAKSY 564

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146337|ref|XP_002325970.1| predicted protein [Populus trichocarpa] gi|222862845|gb|EEF00352.1| predicted protein [Populus trichocarpa]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 285/432 (65%), Positives = 341/432 (78%), Gaps = 9/432 (2%)

Query: 12  SSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRA 71
           S  D QN   A   +P  FQ+ +F FS+YLVA GQGGHKPC  AFGADQFD QNP+E +A
Sbjct: 158 SVHDFQNIKDAMLSAPSQFQVTLFFFSIYLVAFGQGGHKPCALAFGADQFDGQNPKESKA 217

Query: 72  KSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFS 131
           KSSFFNWWYF  S G N T++V++YIQDNL+WALGFGIPC  M   L++ LLG++TYR+S
Sbjct: 218 KSSFFNWWYFYSSVGVNLTLVVMVYIQDNLSWALGFGIPCIVMTTTLLILLLGSRTYRYS 277

Query: 132 IKSKQRNPFARIGRVFVVAIKTRKAT----LASEDEA----QSSQQFKFLNKALLATPDV 183
           +   ++NPF RIGRV   AI+ R  T    +  E++A    QS +QFKFLNKALLA PD 
Sbjct: 278 VNGNEKNPFMRIGRVIHRAIRNRHTTPPSAMPGEEDACQWHQSHEQFKFLNKALLA-PDG 336

Query: 184 SLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKI 243
           SL D  +C++ DVE+ KAL++L+PIW T L YA VFAQ TTFFTKQGAT+DRTI    KI
Sbjct: 337 SLVDQNVCSVSDVEDTKALVKLVPIWITSLAYATVFAQTTTFFTKQGATLDRTIVSGFKI 396

Query: 244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAAL 303
           PAASLQ+FIG  II FIP+YD I VPI R  T+ PSGITMLQRIG GM+ S+ISMV AAL
Sbjct: 397 PAASLQIFIGFAIILFIPVYDRIVVPIARGLTRKPSGITMLQRIGTGMVFSAISMVTAAL 456

Query: 304 VEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELK 363
           VE+KRLETAKE+GL+D PNVT+P S+WWL+PQY+LCGIADV TIVGLQEF YDQ+PKEL+
Sbjct: 457 VEMKRLETAKEHGLVDLPNVTVPMSIWWLVPQYILCGIADVLTIVGLQEFCYDQVPKELR 516

Query: 364 SFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAG 423
           S G+S+Y+S+LGVG FLSS LVS+I+EATS DG +SWFA NLNRAHLDYFYWLLA LSA 
Sbjct: 517 SLGISLYLSILGVGNFLSSFLVSVIDEATSGDGQESWFASNLNRAHLDYFYWLLAGLSAV 576

Query: 424 GLLAFLYFAKSY 435
           G +A+LYFA+SY
Sbjct: 577 GFIAYLYFARSY 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493461|ref|XP_002265921.2| PREDICTED: uncharacterized protein LOC100249450 [Vitis vinifera]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 284/439 (64%), Positives = 346/439 (78%), Gaps = 10/439 (2%)

Query: 6   ALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQN 65
           A++   S S+CQ N+   SCSP   Q+I+F F+LYLVA+GQGGHKPC QAFGADQFD Q+
Sbjct: 127 AVLPSASPSECQKNDEIASCSPPQLQVILFFFALYLVAVGQGGHKPCVQAFGADQFDGQD 186

Query: 66  PQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGT 125
           P E ++KSSFFNWWYF + FG   T+ ++ YIQDNLNW LGFGIPC  MV AL++FLLGT
Sbjct: 187 PVEGKSKSSFFNWWYFSMCFGTLITLFILNYIQDNLNWGLGFGIPCIAMVIALLVFLLGT 246

Query: 126 KTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLAS---EDEA------QSSQQFKFLNKA 176
           KTYR+S+   +++PF RIG+VFV A +  + T +S   E+ A      Q S QF+FLNKA
Sbjct: 247 KTYRYSVNGDEKSPFVRIGQVFVAAARNWRTTDSSLNFEEVARGTLPHQGSLQFRFLNKA 306

Query: 177 LLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRT 236
           LLA PD S ++GK+C++ DVEEAKA+LRL PIWATCL YAIVFAQ +TFFTKQG TMDR+
Sbjct: 307 LLA-PDGSKDNGKVCSVSDVEEAKAVLRLFPIWATCLAYAIVFAQSSTFFTKQGITMDRS 365

Query: 237 ITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSI 296
           +     IPAASLQ FI + II FIPIYD IFVPI R  T+ PSGITMLQRIG G+ LS I
Sbjct: 366 LGSGFVIPAASLQSFITLAIIIFIPIYDRIFVPIARSLTRKPSGITMLQRIGTGIFLSCI 425

Query: 297 SMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYD 356
           SMV+AALVE+KRL+TA+EYGLID P VT+P SV WLIPQY+L G++DVFT+VGLQEFFYD
Sbjct: 426 SMVIAALVEMKRLKTAEEYGLIDMPKVTVPMSVCWLIPQYILFGVSDVFTMVGLQEFFYD 485

Query: 357 QIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWL 416
           Q+P EL+S GL++Y+S+ GVG FLSS L+S+I++ T+ DG  SWF DNLN+AHLDYFYWL
Sbjct: 486 QVPNELRSVGLALYLSIFGVGNFLSSFLISVIDKTTNGDGQGSWFNDNLNQAHLDYFYWL 545

Query: 417 LAALSAGGLLAFLYFAKSY 435
           LA LSA GL  +LYFAKSY
Sbjct: 546 LAGLSAVGLATYLYFAKSY 564

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460434|ref|XP_002266023.1| PREDICTED: probable peptide/nitrate transporter At1g22540 [Vitis vinifera] gi|296089505|emb|CBI39324.3| unnamed protein product [Vitis vinifera]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 281/444 (63%), Positives = 343/444 (77%), Gaps = 14/444 (3%)

Query: 3   TLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFD 62
           T+ A++   + S CQ +    SCSP   Q+I+F F+LYLVA+GQGGHKPC QAFGADQFD
Sbjct: 124 TVSAVLPSFNPSHCQTDKEISSCSPPMLQVILFFFALYLVAVGQGGHKPCVQAFGADQFD 183

Query: 63  AQNPQERRAKSSFFNWWYFGISFGA--NSTILVVIYIQDNLNWALGFGIPCAFMVAALVL 120
            +NP+E +AKSSFFNWWYF +S G   NS+IL   YIQDNLNW LGFGIPC  MVAAL +
Sbjct: 184 GKNPEESKAKSSFFNWWYFCMSGGILINSSILN--YIQDNLNWGLGFGIPCTTMVAALFV 241

Query: 121 FLLGTKTYRFSIKSKQRNPFARIGRVFVVAIK---TRKATLASEDEA------QSSQQFK 171
           FLLGTKTYR+S+K  ++NPF +IG VFV AIK   T  ++L  E+ A      Q S +FK
Sbjct: 242 FLLGTKTYRYSVKGDEKNPFLKIGWVFVAAIKNWHTTDSSLTDEEVAHGTWPHQCSHKFK 301

Query: 172 FLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGA 231
           FLNKALLA PD S EDGK+C++ DVEEAK++LRL PIWA+CL +AIVFAQ  TFFTKQG 
Sbjct: 302 FLNKALLA-PDGSKEDGKVCSVSDVEEAKSVLRLFPIWASCLAFAIVFAQPPTFFTKQGV 360

Query: 232 TMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGM 291
           TMDR+I    K+PAASLQ FI + I+ F+PIYD I VP  R  T+ PSGITMLQRIG GM
Sbjct: 361 TMDRSIGSGFKVPAASLQCFISLSILLFVPIYDRILVPTARVLTRKPSGITMLQRIGTGM 420

Query: 292 LLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQ 351
           LLS I+MV AALVE++RL+TA++YGL+D P  T+P +VWWLIPQY++ G+A VFT+VGLQ
Sbjct: 421 LLSVIAMVFAALVEVQRLKTAEQYGLVDIPYATVPMAVWWLIPQYVIFGVAQVFTMVGLQ 480

Query: 352 EFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLD 411
           EFFYD++P EL+S GLS+Y+S+ GVG FLSS L+S+IN+ T  DG  SWF DNLN+AHLD
Sbjct: 481 EFFYDEVPNELRSVGLSLYLSIFGVGSFLSSFLISVINKTTGGDGQTSWFNDNLNQAHLD 540

Query: 412 YFYWLLAALSAGGLLAFLYFAKSY 435
           YFYWLLA LS  GL  +LY A+SY
Sbjct: 541 YFYWLLAGLSTVGLSTYLYSARSY 564

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135651|ref|XP_002327271.1| proton-dependent oligopeptide transporter [Populus trichocarpa] gi|222835641|gb|EEE74076.1| proton-dependent oligopeptide transporter [Populus trichocarpa]

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 275/438 (62%), Positives = 341/438 (77%), Gaps = 13/438 (2%)

Query: 14  SDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 73
           S CQ  +    CSP   Q+I+F FSLY+VAIGQGGHKPC QAFGADQFD Q+P+E +AKS
Sbjct: 120 SGCQTADAISLCSPDPRQVILFFFSLYIVAIGQGGHKPCVQAFGADQFDGQHPEESKAKS 179

Query: 74  SFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIK 133
           SFFNWWYF ++ G    +L++ YIQDNLNW LGFGIPC  MV AL++FLLGTKTYR+ IK
Sbjct: 180 SFFNWWYFSMNSGMVVALLILNYIQDNLNWGLGFGIPCIIMVGALIVFLLGTKTYRYGIK 239

Query: 134 SKQRNPFARIGRVFVVAIKTRKATLAS----EDEA------QSSQQFKFLNKALLATPDV 183
           + +R+ F RIG+VFV A++  +   ++    E+EA      Q S+QFKFLNKALL TP+ 
Sbjct: 240 TAERSAFLRIGQVFVEAVRNWRTNSSAIDCREEEALGIVPHQCSEQFKFLNKALL-TPNG 298

Query: 184 SLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKI 243
           S EDGK+C++ +VEEAKA+LRL+PIW TCL+Y IVFAQ +TFFTKQGATMDR+I+  + +
Sbjct: 299 SKEDGKVCSIGEVEEAKAVLRLVPIWTTCLIYGIVFAQSSTFFTKQGATMDRSISPGLDV 358

Query: 244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAAL 303
           PAASLQ  I + I+  IP YD + VP  R  T+ PSGITMLQRIG G+ LS++SMV++A+
Sbjct: 359 PAASLQSLISLSIVFLIPFYDRVLVPTARAITRKPSGITMLQRIGTGIFLSALSMVLSAV 418

Query: 304 VEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELK 363
           VE+KRL+TA+EYGL+D PN TIP SV WL+PQY++ G ADVF +VGLQEFFYDQ+P EL+
Sbjct: 419 VEMKRLKTAREYGLVDLPNTTIPMSVCWLVPQYIVYGAADVFAMVGLQEFFYDQVPSELR 478

Query: 364 SFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAG 423
           S GLS+Y+S+ GVG FLSS L+S I +AT  DG  SWFADNLNRAHLDYFYWLLA LS  
Sbjct: 479 SVGLSLYLSIFGVGSFLSSFLISGIEKATGGDGHGSWFADNLNRAHLDYFYWLLAGLSVV 538

Query: 424 GLLAFLYFAKS--YNREN 439
            L+AFLYF+KS  YNRE 
Sbjct: 539 QLVAFLYFSKSYIYNREG 556

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089506|emb|CBI39325.3| unnamed protein product [Vitis vinifera]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 277/430 (64%), Positives = 338/430 (78%), Gaps = 10/430 (2%)

Query: 6    ALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQN 65
            A++   S S+CQ N+   SCSP   Q+I+F F+LYLVA+GQGGHKPC QAFGADQFD Q+
Sbjct: 665  AVLPSASPSECQKNDEIASCSPPQLQVILFFFALYLVAVGQGGHKPCVQAFGADQFDGQD 724

Query: 66   PQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGT 125
            P E ++KSSFFNWWYF + FG   T+ ++ YIQDNLNW LGFGIPC  MV AL++FLLGT
Sbjct: 725  PVEGKSKSSFFNWWYFSMCFGTLITLFILNYIQDNLNWGLGFGIPCIAMVIALLVFLLGT 784

Query: 126  KTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLAS---EDEA------QSSQQFKFLNKA 176
            KTYR+S+   +++PF RIG+VFV A +  + T +S   E+ A      Q S QF+FLNKA
Sbjct: 785  KTYRYSVNGDEKSPFVRIGQVFVAAARNWRTTDSSLNFEEVARGTLPHQGSLQFRFLNKA 844

Query: 177  LLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRT 236
            LLA PD S ++GK+C++ DVEEAKA+LRL PIWATCL YAIVFAQ +TFFTKQG TMDR+
Sbjct: 845  LLA-PDGSKDNGKVCSVSDVEEAKAVLRLFPIWATCLAYAIVFAQSSTFFTKQGITMDRS 903

Query: 237  ITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSI 296
            +     IPAASLQ FI + II FIPIYD IFVPI R  T+ PSGITMLQRIG G+ LS I
Sbjct: 904  LGSGFVIPAASLQSFITLAIIIFIPIYDRIFVPIARSLTRKPSGITMLQRIGTGIFLSCI 963

Query: 297  SMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYD 356
            SMV+AALVE+KRL+TA+EYGLID P VT+P SV WLIPQY+L G++DVFT+VGLQEFFYD
Sbjct: 964  SMVIAALVEMKRLKTAEEYGLIDMPKVTVPMSVCWLIPQYILFGVSDVFTMVGLQEFFYD 1023

Query: 357  QIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWL 416
            Q+P EL+S GL++Y+S+ GVG FLSS L+S+I++ T+ DG  SWF DNLN+AHLDYFYWL
Sbjct: 1024 QVPNELRSVGLALYLSIFGVGNFLSSFLISVIDKTTNGDGQGSWFNDNLNQAHLDYFYWL 1083

Query: 417  LAALSAGGLL 426
            LA LSA G L
Sbjct: 1084 LAGLSAVGCL 1093

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
TAIR|locus:2009487	557	AT1G22540 [Arabidopsis thalian	0.940	0.741	0.555	1.4e-126
TAIR|locus:4515102750	561	AT1G72125 [Arabidopsis thalian	0.945	0.739	0.550	6.7e-120
TAIR|locus:2030326	557	AT1G72120 [Arabidopsis thalian	0.947	0.746	0.537	1.1e-117
TAIR|locus:2009472	564	AT1G22550 [Arabidopsis thalian	0.895	0.696	0.546	7.1e-116
TAIR|locus:2206991	555	AT1G72140 [Arabidopsis thalian	0.929	0.735	0.498	2.3e-110
TAIR|locus:2009542	565	AT1G22570 [Arabidopsis thalian	0.938	0.729	0.493	3.1e-106
TAIR|locus:2030316	538	AT1G72130 [Arabidopsis thalian	0.908	0.741	0.475	1.5e-97
TAIR|locus:1006230253	555	AT3G54450 [Arabidopsis thalian	0.564	0.446	0.460	7.2e-86
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.562	0.433	0.381	1.4e-78
TAIR|locus:2061843	583	AT2G40460 [Arabidopsis thalian	0.886	0.667	0.399	1.9e-74

TAIR|locus:2009487 AT1G22540 [Arabidopsis thaliana (taxid:3702)]

 Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
 Identities = 239/430 (55%), Positives = 303/430 (70%)

Query:    15 DCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 74
             DC+ +N   SCSP  FQ+I F  +LYLVA+ QGGHKPC QAFGADQFD + P+E +AKSS
Sbjct:   128 DCKVSNLLSSCSPR-FQVITFFSALYLVALAQGGHKPCVQAFGADQFDEKEPEECKAKSS 186

Query:    75 FFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKS 134
             FFNWWYFG+ FG  +T+ V+ YIQDNL+WALGFGIPC            GT TYRFSI+ 
Sbjct:   187 FFNWWYFGMCFGTLTTLWVLNYIQDNLSWALGFGIPCIAMVVALVVLLLGTCTYRFSIRR 246

Query:   135 KQRNPFARIGRVFVVAIKTRKAT---LASEDE------AQSSQQFKFLNKALLATPDVSL 185
             + ++PF RIG V+V A+K    +   +A+ +E        SSQQF FLNKAL+A      
Sbjct:   247 EDQSPFVRIGNVYVAAVKNWSVSALDVAAAEERLGLVSCSSSQQFSFLNKALVA------ 300

Query:   186 EDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPA 245
             ++G  C+++++EEAK++LRL PIW TCLVYA+VFAQ  TFFTKQGATM+R+IT   KI  
Sbjct:   301 KNGS-CSIDELEEAKSVLRLAPIWLTCLVYAVVFAQSPTFFTKQGATMERSITPGYKISP 359

Query:   246 ASLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVE 305
             A+LQ             YD + +PI R FT  P GITMLQRIG G+ LS ++MVVAALVE
Sbjct:   360 ATLQSFISLSIVIFIPIYDRVLIPIARSFTHKPGGITMLQRIGTGIFLSFLAMVVAALVE 419

Query:   306 IKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSF 365
             +KRL+TA +YGL+D P+ T+P SVWWL+PQY+L GI DVF +VGLQEFFYDQ+P EL+S 
Sbjct:   420 MKRLKTAADYGLVDSPDATVPMSVWWLVPQYVLFGITDVFAMVGLQEFFYDQVPNELRSV 479

Query:   366 GLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWXXXXXXXXXX 425
             GL++Y+S+ G+G FLSS ++SII +ATS+ G  SWFA+NLN+AHLDYFYW          
Sbjct:   480 GLALYLSIFGIGNFLSSFMISIIEKATSQSGQASWFANNLNQAHLDYFYWLLACLSFIGL 539

Query:   426 XXXXXXXKSY 435
                    KSY
Sbjct:   540 ASYLYVAKSY 549

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:4515102750 AT1G72125 [Arabidopsis thaliana (taxid:3702)]

 Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
 Identities = 236/429 (55%), Positives = 287/429 (66%)

Query:    19 NNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW 78
             NNT  + SP  F   +F FSLYLVAIGQ GHKPC QAFGADQFD +NPQE   +SSFFNW
Sbjct:   127 NNTEVTSSPSSFLNALFFFSLYLVAIGQSGHKPCVQAFGADQFDEKNPQENSDRSSFFNW 186

Query:    79 WYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQR- 137
             WY  +  G    ILVV+YIQ+N++WALGFGIPC            G K+YRFS K++Q  
Sbjct:   187 WYLSMCAGIGLAILVVVYIQENVSWALGFGIPCVFMVISLVLFVLGRKSYRFS-KTRQEE 245

Query:   138 --NPFARIGRVFVVAIKTR--------KATLASEDEAQSS-QQFKFLNKALLATPDVSLE 186
               NPF RIGRVF VA K +        K  L   + +Q S ++  FLNKALL  P+ S E
Sbjct:   246 ETNPFTRIGRVFFVAFKNQRLNSSDLCKVELIEANRSQESPEELSFLNKALLV-PNDSDE 304

Query:   187 DGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAA 246
                 C   DVE+A AL+RLIP+W T L YAI FAQY TFFTKQG TM+RTI   ++IP A
Sbjct:   305 GEVACKSRDVEDATALVRLIPVWLTTLAYAIPFAQYMTFFTKQGVTMERTIFPGVEIPPA 364

Query:   247 SLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEI 306
             SLQ+            YD + VPI R  T++P GIT L+RIG GM+L++++MVVAALVE 
Sbjct:   365 SLQVLISISIVLFVPIYDRVLVPIGRSITKDPCGITTLKRIGTGMVLATLTMVVAALVES 424

Query:   307 KRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFG 366
             KRLETAKEYGLID+P  T+P S+WWL PQY+L G+ADV T+VG+QEFFY Q+P EL+S G
Sbjct:   425 KRLETAKEYGLIDQPKTTLPMSIWWLFPQYMLLGLADVHTLVGMQEFFYSQVPTELRSLG 484

Query:   367 LSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWXXXXXXXXXXX 426
             L+IY+S +GVG  LSS+L+ +I+ AT  D G+SWF  NLNRAHLDYFYW           
Sbjct:   485 LAIYLSAMGVGSLLSSLLIYLIDLATGGDAGNSWFNSNLNRAHLDYFYWLLAVVSAVGFF 544

Query:   427 XXXXXXKSY 435
                   KSY
Sbjct:   545 TFLFISKSY 553

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2030326 AT1G72120 [Arabidopsis thaliana (taxid:3702)]

 Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
 Identities = 228/424 (53%), Positives = 285/424 (67%)

Query:    19 NNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW 78
             N T  + S   F  ++F FSLYLVAIGQ GHKPC QAFGADQFD ++ QE+  +SSFFNW
Sbjct:   127 NTTEVTSSTSSFLNVLFFFSLYLVAIGQSGHKPCVQAFGADQFDEKDSQEKSDRSSFFNW 186

Query:    79 WYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQR- 137
             WY  +S G    ILVV+YIQ+  +WA GFGIPC            G + YR+S +  +  
Sbjct:   187 WYLSLSAGICFAILVVVYIQEEFSWAFGFGIPCVFMVISLVLFVSGRRIYRYSKRRHEEE 246

Query:   138 -NPFARIGRVFVVAIKTRKATLAS----EDEAQSS-QQFKFLNKALLATPDVSLEDGKLC 191
              NPF RIGRVF VA+K ++ + +     E EA +S ++  F NKALL  P+ S +     
Sbjct:   247 INPFTRIGRVFFVALKNQRLSSSDLCKVELEANTSPEKQSFFNKALLV-PNDSSQGENAS 305

Query:   192 TLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLX 251
                DVE+A AL+RLIP+W T L YAI +AQY TFFTKQG TMDRTI   +KIP ASLQ+ 
Sbjct:   306 KSSDVEDATALIRLIPVWFTTLAYAIPYAQYMTFFTKQGVTMDRTILPGVKIPPASLQVF 365

Query:   252 XXXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLET 311
                        YD +FVPI R  T+ P GIT L+RIG G++LS+I+MV+AALVE KRLET
Sbjct:   366 IGISIVLFVPIYDRVFVPIARLITKEPCGITTLKRIGTGIVLSTITMVIAALVEFKRLET 425

Query:   312 AKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYM 371
             AKE+GLID+P  T+P S+WWLIPQYLL G+ADV+T+VG+QEFFY Q+P EL+S GL++Y+
Sbjct:   426 AKEHGLIDQPEATLPMSIWWLIPQYLLLGLADVYTLVGMQEFFYSQVPTELRSIGLALYL 485

Query:   372 SVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWXXXXXXXXXXXXXXXX 431
             S LGVG  LSS+L+S+I+ AT  D G+SWF  NLNRAHLDYFYW                
Sbjct:   486 SALGVGSLLSSLLISLIDLATGGDAGNSWFNSNLNRAHLDYFYWLLAIVSAVGFFTFLFI 545

Query:   432 XKSY 435
              KSY
Sbjct:   546 SKSY 549

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2009472 AT1G22550 [Arabidopsis thaliana (taxid:3702)]

 Score = 1142 (407.1 bits), Expect = 7.1e-116, P = 7.1e-116
 Identities = 223/408 (54%), Positives = 283/408 (69%)

Query:    17 QNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 76
             Q+N  A S  P  +  I+F  SLYLVAIGQGGHKPC QAFGADQFD  +P+ER ++ SFF
Sbjct:   135 QHNRNA-SAKPFFWVNILFFCSLYLVAIGQGGHKPCVQAFGADQFDVGDPKERISRGSFF 193

Query:    77 NWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQ 136
             NWW+  +S G   +I+VV+Y+QDN+NWALGFGIPC            G KTYR+    ++
Sbjct:   194 NWWFLSLSAGITLSIIVVVYVQDNVNWALGFGIPCLFMVMALALFLFGRKTYRYPRGDRE 253

Query:   137 --RNPFARIGRVFVVAIKTRKATLASEDEAQSSQ------QFKFLNKALLATPDVSLEDG 188
                N FARIGRVF+VA K RK  L    + +         Q +FL KALL  P    E G
Sbjct:   254 GKNNAFARIGRVFLVAFKNRKLKLTHSGQLEVGSYKKCKGQLEFLAKALL--PG---EGG 308

Query:   189 -KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAAS 247
              + C+  DVE+A AL+RLIPIW T +V  I +AQY TFFTKQG T+DR I    +IP AS
Sbjct:   309 VEPCSSRDVEDAMALVRLIPIWITSVVSTIPYAQYATFFTKQGVTVDRKILPGFEIPPAS 368

Query:   248 LQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIK 307
              Q             Y+ +F+P+ R  T+ PSGITMLQRIGAGM+LSS++MVVAALVE+K
Sbjct:   369 FQALIGLSIFISVPTYERVFLPLARLITKKPSGITMLQRIGAGMVLSSLNMVVAALVEMK 428

Query:   308 RLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGL 367
             RLETAKE+GL+D+P+ TIP S+WW +PQYLL G+ DVF++VG QEFFYDQ+P EL+S GL
Sbjct:   429 RLETAKEHGLVDRPDATIPMSIWWFVPQYLLLGMIDVFSLVGTQEFFYDQVPTELRSIGL 488

Query:   368 SIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYW 415
             ++ +S +G+  FLS  L+++IN AT ++GGDSWF  NLNRAH+DYFYW
Sbjct:   489 ALSLSAMGLASFLSGFLITVINWATGKNGGDSWFNTNLNRAHVDYFYW 536

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2206991 AT1G72140 [Arabidopsis thaliana (taxid:3702)]

 Score = 1090 (388.8 bits), Expect = 2.3e-110, P = 2.3e-110
 Identities = 214/429 (49%), Positives = 289/429 (67%)

Query:    16 CQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 75
             C +  T +SC     ++I+F  +LYL+A+G+GG K C +AFGADQFD Q+P E +AKSS+
Sbjct:   133 CNDQETRESCVSQ-VKVIIFFCALYLIALGEGGFKVCLRAFGADQFDEQDPNESKAKSSY 191

Query:    76 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSK 135
             FNW YF IS G  +T LV  Y+Q+NL+WALG+ IPC            G KTYRFS   +
Sbjct:   192 FNWLYFAISIGILTTRLVTNYVQENLSWALGYAIPCLSMMLALFLFLLGIKTYRFSTGGE 251

Query:   136 QR------NPFARIGRVFVVAIKTRKATLASED---EAQSSQQFKFLNKALLATPDVSLE 186
              R      NPF RIGRVFV A + R+ T +        +S+++F+FL++A+++       
Sbjct:   252 GRQGKKHDNPFVRIGRVFVAAARNRRQTPSDTCLLLPNESTKKFRFLDRAVIS------- 304

Query:   187 DGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAA 246
                 C   +VEEAKA+L LIPIW   LV+ IVFAQ  TFFTKQG+TMDR+I+ ++++PAA
Sbjct:   305 ----CDSYEVEEAKAVLSLIPIWLCSLVFGIVFAQSPTFFTKQGSTMDRSISSTLQVPAA 360

Query:   247 SLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEI 306
             +LQ             YD +FVPI R  T+ P+GIT LQRI  G+ LS ISMV+AALVE+
Sbjct:   361 TLQCFISLAILVFIPIYDRLFVPIARSITRKPAGITTLQRISTGIFLSIISMVIAALVEM 420

Query:   307 KRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFG 366
             KRL+TA+++GL+D P  T+P SV WLIPQY+L G++DVFT+VGLQEFFY ++P +L+S G
Sbjct:   421 KRLKTARDHGLVDSPKATVPMSVCWLIPQYILFGVSDVFTMVGLQEFFYGEVPPQLRSMG 480

Query:   367 LSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWXXXXXXXXXXX 426
             L++Y+S++G+G FLSS +VS+I EATS+ G  SWF++NLN+AHLDYFYW           
Sbjct:   481 LALYLSIIGIGNFLSSFMVSVIEEATSQSGQVSWFSNNLNQAHLDYFYWLLACLSSLAFI 540

Query:   427 XXXXXXKSY 435
                   KSY
Sbjct:   541 FTVYFAKSY 549

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2009542 AT1G22570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
 Identities = 213/432 (49%), Positives = 277/432 (64%)

Query:    17 QNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 76
             Q N+   S  P  +   +F  SLYLVAIGQGGHKPC QAFGADQFDA++P+E  A+ SFF
Sbjct:   133 QRNDA--SAKPSIWVNTLFFCSLYLVAIGQGGHKPCVQAFGADQFDAEDPKEVIARGSFF 190

Query:    77 NWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQ 136
             NWW+  +S G + +I+VV Y+Q+N+NWA GFGIPC            G K YR+     +
Sbjct:   191 NWWFLSLSAGISISIIVVAYVQENVNWAFGFGIPCLFMVMALAIFLLGRKIYRYPKGHHE 250

Query:   137 R----NPFARIGRVFVVAIKTRKATLASE---------DEAQSSQQFKFLNKALLATPDV 183
                  N FARIGRVFV+A K RK  L            ++ QS ++   LN   LA   +
Sbjct:   251 EVNSSNTFARIGRVFVIAFKNRKLRLEHSSLELDQGLLEDGQSEKRKDRLN--FLAKAMI 308

Query:   184 SLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKI 243
             S E  + C+  DV++AKAL+RLIPIW T +V  I +AQY TFFTKQG T+DR I   ++I
Sbjct:   309 SREGVEPCSGRDVDDAKALVRLIPIWITYVVSTIPYAQYITFFTKQGVTVDRRILPGVEI 368

Query:   244 PAASLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAAL 303
             PAASL              Y+ +F+PI R  T+ P GITMLQRIGAGM+LS  +M++AAL
Sbjct:   369 PAASLLSFVGVSILISVPLYERVFLPIARKITKKPFGITMLQRIGAGMVLSVFNMMLAAL 428

Query:   304 VEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELK 363
             VE KRL+ A+E+GL+DKP+VT+P S+WW +PQYLL G+ D+F++VG QEFFYDQ+P EL+
Sbjct:   429 VESKRLKIAREHGLVDKPDVTVPMSIWWFVPQYLLLGMIDLFSMVGTQEFFYDQVPTELR 488

Query:   364 SFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWXXXXXXXX 423
             S GLS+ +S +G+  FLS  L+S+I+ AT +DG   WF  NLNRAH+DYFYW        
Sbjct:   489 SIGLSLSLSAMGLSSFLSGFLISLIDWATGKDG---WFNSNLNRAHVDYFYWLLAAFTAI 545

Query:   424 XXXXXXXXXKSY 435
                      K Y
Sbjct:   546 AFFAFLFISKMY 557

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2030316 AT1G72130 [Arabidopsis thaliana (taxid:3702)]

 Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
 Identities = 205/431 (47%), Positives = 276/431 (64%)

Query:    23 KSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFG 82
             +S   +  Q  +F FSLYLVAIGQGG+ PC + FGADQFD  + +E R KSSFFNW  FG
Sbjct:   124 QSKDSNQLQETIFFFSLYLVAIGQGGYNPCIKVFGADQFDGNDHKEARDKSSFFNWLMFG 183

Query:    83 ISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSK-QRNPFA 141
                   +T LV  YIQ+NL+W+LGFGIP             GT +YRFS +   ++NPFA
Sbjct:   184 NCISILTTRLVSTYIQENLSWSLGFGIPSVSMLLSLFLFLLGTTSYRFSTERVGKKNPFA 243

Query:   142 RIGRVFVVAIKTRKA-----TLASEDEA------QSSQQFKFLNKALLATPDVSLEDGKL 190
             RI RVF+ A+K R+        A+ +E       QSS+QF+FL++A ++           
Sbjct:   244 RISRVFMEALKNRRQPDLDIANANANETLLLLAHQSSKQFRFLDRAAIS----------- 292

Query:   191 CTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQL 250
             C L ++EEAKA+LRLIPIW T +VY IV AQ  TFFTKQGATMDR+I+  + +PAA+LQ 
Sbjct:   293 CELAEIEEAKAVLRLIPIWITSVVYTIVHAQSPTFFTKQGATMDRSISPGLLVPAATLQS 352

Query:   251 XXXXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLE 310
                         YD + VP  R FTQN SGIT LQRIG G+ LS ++MV+AALVE KRL+
Sbjct:   353 FINLSVVVFIPIYDRLLVPFARSFTQNSSGITTLQRIGTGIFLSILAMVLAALVETKRLQ 412

Query:   311 TAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIY 370
              A++        ++IP SVWWLIPQY++ G++D+FT+VGLQEFFY Q+P EL+S G+++ 
Sbjct:   413 AARD-------ELSIPMSVWWLIPQYVIFGVSDMFTMVGLQEFFYGQVPSELRSVGMALN 465

Query:   371 MSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWXXXXXXXXXXXXXXX 430
             +S+ G G +LSS ++S+I++ T++ G  SWF ++L++AHLDYFYW               
Sbjct:   466 LSIYGAGNYLSSFMISVIDKITNQYGQRSWFDNDLDQAHLDYFYWLLACLGFIGFAFYLW 525

Query:   431 XXKSY--NREN 439
               KSY  +R N
Sbjct:   526 FAKSYVYSRSN 536

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 7.2e-86, Sum P(2) = 7.2e-86
 Identities = 116/252 (46%), Positives = 166/252 (65%)

Query:   167 SQQFKFLNKALLATP---DVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYT 223
             + QF+FL+KA +      + +    +LCT+  VEE K +LRLIPIW + +++     Q  
Sbjct:   269 TNQFRFLDKATIIDEIDHNKNRNPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLN 328

Query:   224 TFFTKQGATMDRTITRSIKIPAASLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGITM 283
             TFF KQG+ MDRTI     IP A+ Q             YD +FVP+ R  T + SGIT 
Sbjct:   329 TFFLKQGSMMDRTIGNHFTIPPAAFQSIVGVTILILIPLYDRVFVPMVRKITNHHSGITS 388

Query:   284 LQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIAD 343
             LQRIG G+ +++ +MV+  LVE KRL+ A+++GLID P   +P S  WL+PQY+L GI D
Sbjct:   389 LQRIGVGLFVATFNMVICGLVEAKRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGD 448

Query:   344 VFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD 403
             VFTIVG+QE FYDQ+P+ ++S G +I++SV+GVG F+S+ ++S + +  S+  G+ W  +
Sbjct:   449 VFTIVGMQELFYDQMPETMRSIGAAIFISVVGVGSFVSTGIISTV-QTISKSHGEEWLVN 507

Query:   404 NLNRAHLDYFYW 415
             NLNRAHLDY+YW
Sbjct:   508 NLNRAHLDYYYW 519

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
 Identities = 97/254 (38%), Positives = 162/254 (63%)

Query:   167 SQQFKFLNKALLATPDVSLEDG-----KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQ 221
             +   KF +KA + +   S++DG     +LC++  VEE K+++ L+P+WAT +V+A V++Q
Sbjct:   289 TDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQ 348

Query:   222 YTTFFTKQGATMDRTITRSIKIPAASLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGI 281
              +T F  QG TMD+ + ++ +IP+ASL L            YD   +P+ R FT+N  G 
Sbjct:   349 MSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGF 408

Query:   282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGI 341
             T LQR+G G+++S  +M+ A ++E+ RL+  K +   D+  + +  S++W IPQYLL G 
Sbjct:   409 TQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHM--SIFWQIPQYLLIGC 466

Query:   342 ADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWF 401
             A+VFT +G  EFFYDQ P  ++S   ++ ++ + +G +LS++LV+++ + T ++G   W 
Sbjct:   467 AEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWI 526

Query:   402 ADNLNRAHLDYFYW 415
              DNLNR HLDYF++
Sbjct:   527 PDNLNRGHLDYFFY 540

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2061843 AT2G40460 [Arabidopsis thaliana (taxid:3702)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 166/416 (39%), Positives = 230/416 (55%)

Query:    16 CQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 75
             C+N    K+ S    Q+  F  SLY +AIG GG KP    FGADQFD+ + +E++ K SF
Sbjct:   126 CENGVCNKASS---LQVTFFYISLYTIAIGAGGTKPNISTFGADQFDSYSIEEKKQKVSF 182

Query:    76 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSK 135
             FNWW F    GA    L ++YIQ+NL W LG+GIP             GT  YR  +  K
Sbjct:   183 FNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSLVVFYIGTPFYRHKV-IK 241

Query:   136 QRNPFARIGRVFVVAIKTRKATLASED-----------EAQSSQQ------FKFLNKALL 178
               N    + +V + A K RK     +            ++    Q      F+FL+KA +
Sbjct:   242 TDNLAKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKHQVHHTPVFRFLDKAAI 301

Query:   179 ATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTIT 238
              T          CT+  VE AK +L LI IW   L+ + ++AQ  T F KQG T+DR I 
Sbjct:   302 KT-----SSRVPCTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLFVKQGTTLDRKIG 356

Query:   239 RSIKIPAASLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISM 298
              + +IPAASL              YD  FVP  R  T NP GIT+LQR+G G  +  +++
Sbjct:   357 SNFQIPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLLQRLGVGFAIQIVAI 416

Query:   299 VVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQI 358
              +A+ VE+KR+   KE+  I  P   +P S++WL+PQY L GI DVF  +GL EFFYDQ 
Sbjct:   417 AIASAVEVKRMRVIKEFH-ITSPTQVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFFYDQS 475

Query:   359 PKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFY 414
             P+E++S G + + S +G+G FL+S LV++I++ TS+ GG SW  +NLN + LDY+Y
Sbjct:   476 PEEMQSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDSRLDYYY 531

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WP01	PTR9_ARATH	No assigned EC number	0.5874	0.9589	0.7558	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	439
pfam00854	372	pfam00854, PTR2, POT family	9e-68
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	9e-21
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	2e-16
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	1e-06

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  219 bits (561), Expect = 9e-68
 Identities = 106/359 (29%), Positives = 167/359 (46%), Gaps = 24/359 (6%)

Query: 26  SPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISF 85
           S    Q+ +F   LYL+A+G GG KP   AFGADQFD     +   +  FF+W+YF I+ 
Sbjct: 26  SLSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQFD---ETQDPRRDGFFSWFYFSINA 82

Query: 86  GANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGR 145
           G+    ++  Y+Q N+ + LGFG+P   M+ AL++FLLG++ Y+             I  
Sbjct: 83  GSLIATIITPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAF 142

Query: 146 VFVVAIKTRKA-----------TLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLE 194
           +   A K RK             L   ++   SQ       A++  P             
Sbjct: 143 IITAAGKNRKLQLPKDSHWLYWALEKYNKRSISQTKVHTRVAVIFIPLPKFWA-LFDQQG 201

Query: 195 DVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGI 254
            V   +A+L ++PIWA  ++   ++ Q  T   +Q  TMDR I    +IP AS Q F  +
Sbjct: 202 SVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPL 261

Query: 255 GIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKE 314
            ++  +PI D +  P      +   G+T+ QR G GM +  ++  +AA+VE KR   A  
Sbjct: 262 AVLILLPILDFLVYP----LLRLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAA 317

Query: 315 YGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSV 373
            GL   P  T+P  + W +P+  + G+     + G  EF  D +P  + S    +  + 
Sbjct: 318 LGLTS-PGWTVPLFILWSLPELFISGVG----LAGALEFAPDALPSSMMSLWTLLSAAA 371

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 94.3 bits (235), Expect = 9e-21
 Identities = 71/339 (20%), Positives = 132/339 (38%), Gaps = 24/339 (7%)

Query: 35  FIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVV 94
               L L+ +G G  KP   +   + +   +P+ R    + F   Y GI+ G+    ++ 
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKDDPR-RDGGFTLF---YMGINIGSLIAPIIT 175

Query: 95  IYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTR 154
             +  N  W +GFG+    M+  LV+FLLG +  +        NP +    + V+     
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVV 235

Query: 155 KATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLV 214
               A      +   F  +   +     +        + +  +E + LL  IP++   ++
Sbjct: 236 MILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVI 295

Query: 215 YAIVFAQYTTFFTKQGATM-DRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRY 273
           +  ++ Q  +          +R I    ++P A  Q      II F PI   ++  + R 
Sbjct: 296 FWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRG 354

Query: 274 FTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLI 333
             Q  + I        G++L+ +  ++  L  I         GL+         SVWWL+
Sbjct: 355 NKQPSTPIKF----ALGLILAGLGFLILLLAGIWF---GGPSGLV---------SVWWLV 398

Query: 334 PQYLLCGIADVF-TIVGLQEFFYDQIPKELKSFGLSIYM 371
             Y+L    ++F + VGL        P  LKSF ++++ 
Sbjct: 399 LSYVLQSFGELFISPVGL-SMVTKLAPPALKSFIMAMWF 436

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 81.4 bits (201), Expect = 2e-16
 Identities = 74/292 (25%), Positives = 120/292 (41%), Gaps = 46/292 (15%)

Query: 39  LYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIY-- 96
           L L+A+G GG KPC     A   D    ++   +  FF+++YF I+ G  S    +I   
Sbjct: 92  LALIALGTGGIKPC---VSAFGGDQFEERQLSLRFRFFSFFYFAINAG--SLFSTIITPI 146

Query: 97  -------IQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVV 149
                        + L FG+P   M  AL++F +G+K Y+   K    N  +++ +  V 
Sbjct: 147 LRGDVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYK--KKPPVGNIVSKVMKCIVF 204

Query: 150 AIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRL---- 205
           A+K R  T  SED              L       L          +   K LLR+    
Sbjct: 205 ALKKRFRT-RSED--------WPRLHWLDWAAPKYLIR-------MIRSTKRLLRVLFLF 248

Query: 206 IPIWATCLVYAIVFAQYTTFFTKQGATMD-RTITRSIKIPAASLQLFIGIGIITFIPIYD 264
           IP+      +A+ F Q  + +T Q   MD       I+     +Q    + ++  +PI+D
Sbjct: 249 IPLPM---FWAL-FDQQGSRWTLQATRMDGDVGLFPIQ--PDQMQAVNPLLVLILVPIFD 302

Query: 265 CIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYG 316
            +  P            T L+++  GMLL++++  VAAL++ K   T  E  
Sbjct: 303 YVVYPALAKCGTR---FTSLRKMAVGMLLAALAFAVAALLQNKINPTLPEEP 351

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 49/309 (15%), Positives = 93/309 (30%), Gaps = 30/309 (9%)

Query: 35  FIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVV 94
             + L  +A+G G  K    +     ++  +   R    + F   Y  I+ G+  + L+ 
Sbjct: 105 IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLF---YMSINIGSFISPLLA 161

Query: 95  IYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIK-----SKQRNPFARIGRVFVV 149
             I +N  + +GF +    MV  L+ F  G    R         S Q   + ++    + 
Sbjct: 162 GVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLA 221

Query: 150 AIKTR-KATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPI 208
           A+               ++     L    LA             L+ V   K    ++  
Sbjct: 222 ALALVFFCAWLMHHVVIANI---LLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLF 278

Query: 209 WATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV 268
               + + +     T+        M   +   + +P    Q      ++   P+   I+ 
Sbjct: 279 LEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWT 337

Query: 269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTS 328
            + R         T   +   GML    S +            A      D       TS
Sbjct: 338 RLGRKGKD----PTTPLKFTLGMLFCGASFLTF----------AASIWFADAGG---LTS 380

Query: 329 VWWLIPQYL 337
            W+++  YL
Sbjct: 381 PWFMVLIYL 389

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	439
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.98
PRK03545	390	putative arabinose transporter; Provisional	99.75
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.73
PRK05122	399	major facilitator superfamily transporter; Provisi	99.71
TIGR00893	399	2A0114 d-galactonate transporter.	99.7
PRK09874	408	drug efflux system protein MdtG; Provisional	99.7
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.69
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.68
PRK10489	417	enterobactin exporter EntS; Provisional	99.68
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.68
PRK12382	392	putative transporter; Provisional	99.68
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.68
TIGR00900	365	2A0121 H+ Antiporter protein.	99.68
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.67
KOG2532	466	consensus Permease of the major facilitator superf	99.66
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.66
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.65
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.64
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.63
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.63
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.62
PRK10054	395	putative transporter; Provisional	99.62
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.61
PRK10091	382	MFS transport protein AraJ; Provisional	99.61
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.61
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.61
PRK09705	393	cynX putative cyanate transporter; Provisional	99.6
PRK11663	434	regulatory protein UhpC; Provisional	99.6
PRK10504	471	putative transporter; Provisional	99.6
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.6
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.6
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.59
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.59
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.59
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.58
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.58
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.57
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.56
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.55
PRK15011	393	sugar efflux transporter B; Provisional	99.55
PRK11010	491	ampG muropeptide transporter; Validated	99.55
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.54
TIGR00895	398	2A0115 benzoate transport.	99.54
PRK12307	426	putative sialic acid transporter; Provisional	99.54
PRK03633	381	putative MFS family transporter protein; Provision	99.53
TIGR00901	356	2A0125 AmpG-related permease.	99.52
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.52
TIGR00891	405	2A0112 putative sialic acid transporter.	99.52
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.52
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.51
PRK09952	438	shikimate transporter; Provisional	99.51
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.51
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.5
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.49
TIGR00898	505	2A0119 cation transport protein.	99.49
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.48
PRK03699	394	putative transporter; Provisional	99.48
PRK10642	490	proline/glycine betaine transporter; Provisional	99.47
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.47
PRK11043	401	putative transporter; Provisional	99.47
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.46
PRK15075	434	citrate-proton symporter; Provisional	99.45
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.45
PRK11902	402	ampG muropeptide transporter; Reviewed	99.44
PRK03893	496	putative sialic acid transporter; Provisional	99.44
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.44
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.42
PLN00028	476	nitrate transmembrane transporter; Provisional	99.41
PRK09528	420	lacY galactoside permease; Reviewed	99.41
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.36
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.36
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.35
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.34
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.33
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.29
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.29
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.28
PRK10133	438	L-fucose transporter; Provisional	99.27
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.26
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.25
PF13347	428	MFS_2: MFS/sugar transport protein	99.24
TIGR00805	633	oat sodium-independent organic anion transporter.	99.24
PRK09848	448	glucuronide transporter; Provisional	99.22
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.2
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.18
PRK09669	444	putative symporter YagG; Provisional	99.16
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.15
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.14
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.09
PRK10429	473	melibiose:sodium symporter; Provisional	99.07
KOG2533	495	consensus Permease of the major facilitator superf	99.05
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.98
KOG2615	451	consensus Permease of the major facilitator superf	98.95
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.94
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.9
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.86
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.85
PRK11462	460	putative transporter; Provisional	98.85
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.84
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.78
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.67
KOG0569	485	consensus Permease of the major facilitator superf	98.65
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.58
PRK03545	390	putative arabinose transporter; Provisional	98.58
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.57
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.57
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.56
PRK11663	434	regulatory protein UhpC; Provisional	98.52
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.52
COG2211	467	MelB Na+/melibiose symporter and related transport	98.5
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.49
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.46
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.44
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.44
PRK10054	395	putative transporter; Provisional	98.43
KOG0254	513	consensus Predicted transporter (major facilitator	98.43
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.42
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.42
TIGR00900	365	2A0121 H+ Antiporter protein.	98.42
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.41
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.41
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.38
PRK10504	471	putative transporter; Provisional	98.37
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.35
TIGR00893	399	2A0114 d-galactonate transporter.	98.35
PTZ00207	591	hypothetical protein; Provisional	98.35
PRK10091	382	MFS transport protein AraJ; Provisional	98.33
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.32
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.31
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.29
TIGR00891	405	2A0112 putative sialic acid transporter.	98.28
PRK09874	408	drug efflux system protein MdtG; Provisional	98.27
KOG3626	735	consensus Organic anion transporter [Secondary met	98.26
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.25
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.25
TIGR00895	398	2A0115 benzoate transport.	98.23
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.22
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.21
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.2
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.2
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.19
PRK03633	381	putative MFS family transporter protein; Provision	98.18
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.18
PRK09705	393	cynX putative cyanate transporter; Provisional	98.17
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.16
TIGR00805	633	oat sodium-independent organic anion transporter.	98.14
PRK03699	394	putative transporter; Provisional	98.13
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.13
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.13
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.12
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.1
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.1
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.1
PRK10489	417	enterobactin exporter EntS; Provisional	98.08
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.07
PRK12307	426	putative sialic acid transporter; Provisional	98.05
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.05
PRK05122	399	major facilitator superfamily transporter; Provisi	98.04
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.04
PRK11043	401	putative transporter; Provisional	98.03
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.02
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.01
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.01
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.01
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.01
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.99
PRK12382	392	putative transporter; Provisional	97.99
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.98
PRK03893	496	putative sialic acid transporter; Provisional	97.96
PLN00028	476	nitrate transmembrane transporter; Provisional	97.96
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.95
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.92
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.91
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.9
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.88
TIGR00898	505	2A0119 cation transport protein.	97.84
PRK10133	438	L-fucose transporter; Provisional	97.83
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.81
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.81
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.8
KOG3762	618	consensus Predicted transporter [General function	97.77
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.75
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.74
PTZ00207	591	hypothetical protein; Provisional	97.74
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.72
TIGR00901	356	2A0125 AmpG-related permease.	97.66
PRK11010	491	ampG muropeptide transporter; Validated	97.66
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.65
KOG2532	466	consensus Permease of the major facilitator superf	97.64
TIGR00896	355	CynX cyanate transporter. This family of proteins	97.62
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.57
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.55
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.53
PRK11902	402	ampG muropeptide transporter; Reviewed	97.53
PRK10642	490	proline/glycine betaine transporter; Provisional	97.52
KOG2563	480	consensus Permease of the major facilitator superf	97.45
KOG2533	495	consensus Permease of the major facilitator superf	97.44
PRK15075	434	citrate-proton symporter; Provisional	97.35
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.32
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.28
PRK09952	438	shikimate transporter; Provisional	97.24
PRK15011	393	sugar efflux transporter B; Provisional	97.22
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.19
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.18
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.16
KOG2615	451	consensus Permease of the major facilitator superf	97.12
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.09
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.06
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.01
PRK09528	420	lacY galactoside permease; Reviewed	96.98
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.97
KOG0254	513	consensus Predicted transporter (major facilitator	96.86
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.82
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	96.78
PRK09669	444	putative symporter YagG; Provisional	96.76
KOG3626	735	consensus Organic anion transporter [Secondary met	96.7
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.67
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.55
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.49
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	96.48
PRK11462	460	putative transporter; Provisional	96.42
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.31
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.3
PRK10429	473	melibiose:sodium symporter; Provisional	96.09
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.09
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.01
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	95.88
PF13347	428	MFS_2: MFS/sugar transport protein	95.73
KOG0569	485	consensus Permease of the major facilitator superf	95.65
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	95.57
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	95.55
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.52
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	95.21
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	94.56
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	93.86
PRK09848	448	glucuronide transporter; Provisional	93.83
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	93.7
KOG0637	498	consensus Sucrose transporter and related proteins	93.45
KOG2563	480	consensus Permease of the major facilitator superf	93.36
COG0477	338	ProP Permeases of the major facilitator superfamil	93.13
COG2211	467	MelB Na+/melibiose symporter and related transport	92.81
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	92.74
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	92.67
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	90.94
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	90.71
KOG2816	463	consensus Predicted transporter ADD1 (major facili	90.19
TIGR00788	468	fbt folate/biopterin transporter. The only functio	90.06
COG2270	438	Permeases of the major facilitator superfamily [Ge	89.21
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	88.65
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	88.26
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	87.45
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	87.25
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	87.19
KOG3762	618	consensus Predicted transporter [General function	87.15
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	83.44

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=7.8e-49  Score=404.63  Aligned_cols=428  Identities=46%  Similarity=0.803  Sum_probs=378.5

Q ss_pred             eeeeeccccCCCccCCCCCCCccC-CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHH
Q 013611            3 TLLALITLLSSSDCQNNNTAKSCS-PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYF   81 (439)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~   81 (439)
                      |+.+-+-.++-.+|.|......|. |.+.+...++.++.++++|.|+.+||..++++|||++.++++...+.++|+|+|+
T Consensus       122 t~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf  201 (571)
T KOG1237|consen  122 TLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYF  201 (571)
T ss_pred             HHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHH
Confidence            344455556677775666666888 7788999999999999999999999999999999998777777778899999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcc
Q 013611           82 GISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASE  161 (439)
Q Consensus        82 ~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  161 (439)
                      ..|+|..++..+..|++++.+|.++|.++++.+.+++++|+.+.+.|+.++|.+  +|+.++.+++..+.++++..++..
T Consensus       202 ~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~g--sp~t~i~~Vlvaa~~k~~~~~~~~  279 (571)
T KOG1237|consen  202 SQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRG--SPKTRIGQVLVAAAFKRKAVVSLD  279 (571)
T ss_pred             HHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCC--CchhHHHHHHHHHHHHHhccCCCc
Confidence            999999999999999999999999999999999999999999999999988877  899999999999988877654432


Q ss_pred             -----------hhhcccccchhhhhhhhcCCC-----CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 013611          162 -----------DEAQSSQQFKFLNKALLATPD-----VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTF  225 (439)
Q Consensus       162 -----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~  225 (439)
                                 +..+..+.+.++|++......     ....+|+.++.++|||.|..+|+++++...+++++.+.|+.+.
T Consensus       280 ~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~  359 (571)
T KOG1237|consen  280 PEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTF  359 (571)
T ss_pred             chhccccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhh
Confidence                       111224556788887765432     2345588889999999999999999999999999999999999


Q ss_pred             HHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHH
Q 013611          226 FTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVE  305 (439)
Q Consensus       226 ~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~  305 (439)
                      ++.|+.+||++++.++.+|+++++.+..+.+++..|+.++...|+.+|..++|++++++.++.+|+++..++|..++..|
T Consensus       360 ~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE  439 (571)
T KOG1237|consen  360 FVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVE  439 (571)
T ss_pred             eehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHH
Confidence            99999999999983499999999999999999999999999999999988888889999999999999999999999999


Q ss_pred             HHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHH
Q 013611          306 IKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILV  385 (439)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~  385 (439)
                      .+|++...+     ..+.+.+++++|++|||++.|+||++.++++.|+.++++|++||+.++++|.+..++|+.++..++
T Consensus       440 ~krl~~~~~-----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv  514 (571)
T KOG1237|consen  440 AKRLKTAVS-----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLV  514 (571)
T ss_pred             HHHhhhhhh-----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999887765     111234799999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccCCCCCCCCC-CCcccchhhHHHHHHHHHHHHHHHHHHHHhccCccCC
Q 013611          386 SIINEATSRDGGDSWFA-DNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNREN  439 (439)
Q Consensus       386 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~~~  439 (439)
                      ..+...++.  ..+|++ +++|.++..++||+++.+..+....|.+.+++|++++
T Consensus       515 ~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~  567 (571)
T KOG1237|consen  515 SLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKD  567 (571)
T ss_pred             HHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecc
Confidence            988766533  357999 9999999999999999999999999999999997753

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=8.3e-40  Score=322.50  Aligned_cols=364  Identities=20%  Similarity=0.323  Sum_probs=280.0

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+...+++++.++++|.|++|||++++++|+||++|||    |+++|+++|+++|+|++++|++++++.+++||+.+|.+
T Consensus       115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~  190 (498)
T COG3104         115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL  190 (498)
T ss_pred             ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence            35678999999999999999999999999999999988    99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchh------HHHHHHHHhHh--hccccCcchhhcccccchhhhhhhhcCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFAR------IGRVFVVAIKT--RKATLASEDEAQSSQQFKFLNKALLATP  181 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (439)
                      +++.+.+++++++++++++...+..++.+|+..      ...++......  ...           ...+.++.......
T Consensus       191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~~  259 (498)
T COG3104         191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLL-----------LNQNTFSGVLLVIS  259 (498)
T ss_pred             HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            999999999999999998876543222233321      11111111000  000           00011111111000


Q ss_pred             C-----CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh-hcccCCCCCccccchhhhhhHHHH
Q 013611          182 D-----VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGA-TMDRTITRSIKIPAASLQLFIGIG  255 (439)
Q Consensus       182 ~-----~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~g~g~~~~~~~~~~in~~~  255 (439)
                      .     ...... ..++.. +|+||++..+++++..++||+.|+|+++++..++. +.|++.. |+++|++++|++|+++
T Consensus       260 i~~~~~~~~~~~-~~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~  336 (498)
T COG3104         260 ILIAIIYFAEAF-RSPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFF  336 (498)
T ss_pred             HHHHHHHHHHHh-ccCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHH
Confidence            0     000000 011223 78899999999999999999999999999988875 4566645 7999999999999999


Q ss_pred             HHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHH
Q 013611          256 IITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQ  335 (439)
Q Consensus       256 iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  335 (439)
                      ++++.|+.+++++|+.+++ ++   ++++.|+++|+++++++++++.......       +     +.....|+||++++
T Consensus       337 Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~-------~-----~~~~~~s~~~lil~  400 (498)
T COG3104         337 IILFSPILAALWTKLGRGN-KQ---PSTPIKFALGLILAGLGFLILLLAGIWF-------G-----GPSGLVSVWWLVLS  400 (498)
T ss_pred             HHHHHHHHHHHHhHhhcCC-CC---CCcchHHHHHHHHHHHHHHHHHHHHHhh-------c-----CCCCCcCHHHHHHH
Confidence            9999999999999988875 44   5899999999999999999998875431       1     00124799999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHH
Q 013611          336 YLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYW  415 (439)
Q Consensus       336 ~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~  415 (439)
                      |+++++||.+.+|.+.+++.+.+|++++|.+||.|++..+.|+.++..+.+.-.. +  +       +..+......+|+
T Consensus       401 y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~--~-------~~~~~~~~~~~F~  470 (498)
T COG3104         401 YVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T--D-------PAYTAFIEGRVFG  470 (498)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c--c-------hhhhhhhhhhhHH
Confidence            9999999999999999999999999999999999999999999999888774221 0  0       0011123455788


Q ss_pred             HHHHHHHHHHHHHHHHhccCcc
Q 013611          416 LLAALSAGGLLAFLYFAKSYNR  437 (439)
Q Consensus       416 ~~~~l~~l~~~i~~~~~~~~~~  437 (439)
                      .++..+++..++.....++.+|
T Consensus       471 ~~g~v~i~~~~~~~~~~~~~~r  492 (498)
T COG3104         471 TIGVVAIVIGILLLLLSPKLNR  492 (498)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999888888888877654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=2.8e-33  Score=285.14  Aligned_cols=364  Identities=14%  Similarity=0.196  Sum_probs=258.2

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHH
Q 013611           34 VFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAF  113 (439)
Q Consensus        34 ~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~  113 (439)
                      .+.+++.++++|.|..+|+.+++++++||++|++    |+++++++|++.|+|++++|.++|++.+.+||++.|.++++.
T Consensus       102 ~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaig  177 (493)
T PRK15462        102 FLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG  177 (493)
T ss_pred             HHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence            3566777888999999999999999999987655    999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHhcCcceeeecCCCCCCcch--hH----HHHHHHH------hHhhccccCcchhhcccccchhhhhhhhcCC
Q 013611          114 MVAALVLFLLGTKTYRFSIKSKQRNPFA--RI----GRVFVVA------IKTRKATLASEDEAQSSQQFKFLNKALLATP  181 (439)
Q Consensus       114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~--~~----~~~l~~a------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (439)
                      ++++++++++++|++.+..+.+ ++|..  +.    ...+...      ......        .  +  ++.+.......
T Consensus       178 m~l~li~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~--~~~~~~~~~~~  244 (493)
T PRK15462        178 MIAGLVIFLCGNRHFTHTRGVN-KKVLRATNFLLPNWGWLLVLLVATPALITVLF--------W--K--EWSVYALIVAT  244 (493)
T ss_pred             HHHHHHHHHHhhhhhccCCCCC-CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------H--H--HHHHHHHHHHH
Confidence            8899988888777654321100 02211  10    0000000      000000        0  0  00000000000


Q ss_pred             --CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-hhcccCCCCCccccchhhhhhHHHHHHH
Q 013611          182 --DVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQG-ATMDRTITRSIKIPAASLQLFIGIGIIT  258 (439)
Q Consensus       182 --~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~g~g~~~~~~~~~~in~~~iii  258 (439)
                        ......+...+..+.+|+||+..++.+++..++||+.|+|.+++++..+ +++|++++ |+++|++|+|++|++.+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~  323 (493)
T PRK15462        245 IIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVML  323 (493)
T ss_pred             HHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHH
Confidence              0000000000012346788899999999999999999999999998776 46899988 9999999999999999999


Q ss_pred             HHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHH
Q 013611          259 FIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLL  338 (439)
Q Consensus       259 ~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l  338 (439)
                      +.|+...+|.++.+|. ++   ++...|+.+|++++++++.++.+.....    .++         ..++.+|++..+++
T Consensus       324 l~P~~a~lw~~l~~~~-~~---~s~~~Kfa~g~~~~g~~f~~l~~~~~~~----~~~---------~~~s~~wl~~~~~~  386 (493)
T PRK15462        324 CGVFLAWVVKESVAGN-RT---VRIWGKFALGLGLMSAGFCILTLSARWS----AMY---------GHSSLPLMVLGLAV  386 (493)
T ss_pred             HHHHHHHHHHHHhcCC-CC---CCcHHHHHHHHHHHHHHHHHHHHHHhhc----CCC---------CCcCHHHHHHHHHH
Confidence            9999999998775432 23   5899999999999999999988765310    011         13789999999999


Q ss_pred             HHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHh-hhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHH
Q 013611          339 CGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVL-GVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLL  417 (439)
Q Consensus       339 ~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~-~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~  417 (439)
                      +++||.+.+|.+++++.+.+|++.+|++||+|++.. ++|+.+++.+.+....... +++..-   .-+...+..+|..+
T Consensus       387 ~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~-~~~~~~---~~~~~~~~~~f~~~  462 (493)
T PRK15462        387 MGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASF-DASGAI---NYSINAYIEVFDQI  462 (493)
T ss_pred             HHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-Cccccc---cchhhhHHHHHHHH
Confidence            999999999999999999999999999999999954 7999999888887642110 000000   00112456678888


Q ss_pred             HHHHHHH--HHHHHHHhccCc
Q 013611          418 AALSAGG--LLAFLYFAKSYN  436 (439)
Q Consensus       418 ~~l~~l~--~~i~~~~~~~~~  436 (439)
                      +.++++.  .+++.++.+.+|
T Consensus       463 ~~~~~~~~~~~~~~~~~~~~~  483 (493)
T PRK15462        463 TWGALACVGVVLMIWLYQALK  483 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            7766655  444555544333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=1.3e-32  Score=283.50  Aligned_cols=364  Identities=15%  Similarity=0.233  Sum_probs=259.2

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHH
Q 013611           34 VFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAF  113 (439)
Q Consensus        34 ~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~  113 (439)
                      .++++|.++++|+|+++|+..++++|+||+++++    |+++++++|+++|+|+++||.++|++.+++|||++|+++++.
T Consensus       107 ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~  182 (489)
T PRK10207        107 LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG  182 (489)
T ss_pred             HHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            4668999999999999999999999999987643    788999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHH-------H-hHhhccccCcchhhcccccchhh-hhhhhcCCCCC
Q 013611          114 MVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVV-------A-IKTRKATLASEDEAQSSQQFKFL-NKALLATPDVS  184 (439)
Q Consensus       114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------a-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  184 (439)
                      ++++++.+++.++++++.+++.++++.+. .+.+..       . ...+..        +......+. .......  ..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~--~~  251 (489)
T PRK10207        183 LIIALLVYFACRGMVKDIGSEPDHKPMSF-SKLLLVLLGSVVMIFVCAWLM--------HNVEVANLVLIVLSIVV--TI  251 (489)
T ss_pred             HHHHHHHHHHcchhhcccCCCCCccchhh-hhHHHHHHHHHHHHHHHHHHH--------hhhhHHHHHHHHHHHHH--HH
Confidence            88888777777766654321111122221 111100       0 000000        000000000 0000000  00


Q ss_pred             CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh-hcccCCCCCccccchhhhhhHHHHHHHHHHhh
Q 013611          185 LEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGA-TMDRTITRSIKIPAASLQLFIGIGIITFIPIY  263 (439)
Q Consensus       185 ~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~  263 (439)
                      ...+...+.++ .++++.+....+++..+++|+.+.|..+.++.+.+ +++++.. |+.+++++++++|++.++++.|+.
T Consensus       252 ~f~~~~~~~~~-~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~  329 (489)
T PRK10207        252 IFFREAFKLDK-TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPIL  329 (489)
T ss_pred             HHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHH
Confidence            00000111122 34556666777778899999999999888887775 4666666 888999999999999999999999


Q ss_pred             hhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHH
Q 013611          264 DCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIAD  343 (439)
Q Consensus       264 ~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige  343 (439)
                      ++++.++.+|+ .+   +++..|+.+|+++.+++++.+...+...       .  +.   ...+++||+++.+++.|+||
T Consensus       330 ~~l~~rl~~r~-~~---~~~~~k~~~G~~l~~~~~~~~~~~~~~~-------~--~~---~~~~s~~~~i~~~~l~g~Ge  393 (489)
T PRK10207        330 AGIYTHLGSKG-KD---LSMPMKFTLGMFLCSLGFLTAAAAGMWF-------A--DA---QGLTSPWFIVLVYLFQSLGE  393 (489)
T ss_pred             HHHHHHHhhCC-CC---CCcHHHHHHHHHHHHHHHHHHHHHHHhh-------c--CC---CCccCHHHHHHHHHHHHHHH
Confidence            99777665553 33   5899999999999999987765443210       0  00   01367899999999999999


Q ss_pred             HHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhcc-ccCCCCCCCCCCCcccchhhHHHHHHHHHHH
Q 013611          344 VFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA-TSRDGGDSWFADNLNRAHLDYFYWLLAALSA  422 (439)
Q Consensus       344 ~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~  422 (439)
                      ++.+++.++++++.+|++++|.+||+|++.+++|+.+|..+.+.+... ...||.       .....+..+|..+++.++
T Consensus       394 ~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~-------~~~~~~~~~f~~~~~~~~  466 (489)
T PRK10207        394 LFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPL-------ETLPVYTNVFGKIGLVTL  466 (489)
T ss_pred             HHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccch-------hhhhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988866421 111110       001235778999999999


Q ss_pred             HHHHHHHHHhccCcc
Q 013611          423 GGLLAFLYFAKSYNR  437 (439)
Q Consensus       423 l~~~i~~~~~~~~~~  437 (439)
                      +.++++++..++++|
T Consensus       467 ~~~v~~~~~~~~~~~  481 (489)
T PRK10207        467 GVAVVMALMVPWLNR  481 (489)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            998888888776655

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=1.3e-31  Score=281.67  Aligned_cols=362  Identities=27%  Similarity=0.475  Sum_probs=291.2

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc-------cc
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL-------NW  103 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~-------g~  103 (439)
                      ....+++++.++++|.|++|||..++++|||++++++   +|.++|+|+|+++|+|+++++.+.+++.+++       ||
T Consensus        84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~---~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~  160 (654)
T TIGR00926        84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLS---LRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY  160 (654)
T ss_pred             HHHHHHHHHHHHHhhccccccCchhhhHhhcCccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence            3455789999999999999999999999999875432   3899999999999999999999999998543       69


Q ss_pred             hhhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCC
Q 013611          104 ALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDV  183 (439)
Q Consensus       104 ~~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (439)
                      +++|.++++.++++.++++.++++++..+|++  +++.+..+++..+.+++...      .+.....+|+|.+....   
T Consensus       161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~g--s~l~~v~~vi~~a~~~~~~~------~~~~~~~~~ld~a~~~~---  229 (654)
T TIGR00926       161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKG--NIVSKVIKCIVTALRKRFST------RSEHWPLHWLDYAKDKH---  229 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCCCCCc--cHHHHHHHHHHHHHHHhhcc------CCcccchhHHHHhcccc---
Confidence            99999999999999999999999887766655  77777777777776553221      01111246777655332   


Q ss_pred             CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhh
Q 013611          184 SLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIY  263 (439)
Q Consensus       184 ~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~  263 (439)
                              +.++++++|++++++++++..++||+.+.|+.+.++.|+.+++++++ ++.+|+++++.+|++.++++.|++
T Consensus       230 --------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~  300 (654)
T TIGR00926       230 --------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQPDQMQVVNPLLILIFVPIF  300 (654)
T ss_pred             --------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecCHHHHHHHHHHHHHHhHHHH
Confidence                    13468899999999999999999999999999999999999988887 889999999999999999999999


Q ss_pred             hhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Q 013611          264 DCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETA-------------------------------  312 (439)
Q Consensus       264 ~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~-------------------------------  312 (439)
                      +..++|..+|++.+   +++.+|+.+|+++.+++++++...|.++++..                               
T Consensus       301 ~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (654)
T TIGR00926       301 DYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQVLNTDCTICDFSVLSKRVL  377 (654)
T ss_pred             HHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEEEecCCCCcceEEEEecCCc
Confidence            99899988776433   68899999999999999999999888766100                               


Q ss_pred             ---------hh-------------h---------------------------------C----C------C---------
Q 013611          313 ---------KE-------------Y---------------------------------G----L------I---------  318 (439)
Q Consensus       313 ---------~~-------------~---------------------------------~----~------~---------  318 (439)
                               ..             .                                 +    .      .         
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (654)
T TIGR00926       378 PHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKISYVLLLSQGGYQLTANTDKP  457 (654)
T ss_pred             ccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCceEEEEEecCCcceeeeeecC
Confidence                     00             0                                 0    0      0         


Q ss_pred             --------------------------------------------------------------------------------
Q 013611          319 --------------------------------------------------------------------------------  318 (439)
Q Consensus       319 --------------------------------------------------------------------------------  318 (439)
                                                                                                      
T Consensus       458 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  537 (654)
T TIGR00926       458 TDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRIDNAKSSTFLSNQLDMGIYY  537 (654)
T ss_pred             ccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecccccccccccccccccccceEE
Confidence                                                                                            


Q ss_pred             ----CCC-------------CCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhh
Q 013611          319 ----DKP-------------NVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLS  381 (439)
Q Consensus       319 ----~~~-------------~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig  381 (439)
                          ++.             +.+.+++++|+++|+++.++||.+.+++.+|+.++++|++||+..+++|.++.++|+.+.
T Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~  617 (654)
T TIGR00926       538 LIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIV  617 (654)
T ss_pred             EEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence                000             001125579999999999999999999999999999999999999999999999999987


Q ss_pred             hHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611          382 SILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY  435 (439)
Q Consensus       382 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~  435 (439)
                      ..+...=..                 .+.+..|+.+++++++-.++|.++++.|
T Consensus       618 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~f~~~a~~Y  654 (654)
T TIGR00926       618 VVIAEFENF-----------------SVQAAEFFLFASLMLVVMAIFSILAYFY  654 (654)
T ss_pred             HHHHHhhcC-----------------hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            655443221                 1234568888899999999999888765

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=6.5e-32  Score=277.76  Aligned_cols=357  Identities=15%  Similarity=0.188  Sum_probs=261.0

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIP  110 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~  110 (439)
                      +.+.++++|.++|+|.|+++|+..++++|++|+++++   +|+++++++|++.|+|.++||.+++++.+++||++.|.++
T Consensus       101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~  177 (475)
T TIGR00924       101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA  177 (475)
T ss_pred             cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            4567888999999999999999999999999876521   2889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcceeeecCCCCCCcch----h-HH--H----HHHHHhHhhccccCcchhhcccccchhhhhh---
Q 013611          111 CAFMVAALVLFLLGTKTYRFSIKSKQRNPFA----R-IG--R----VFVVAIKTRKATLASEDEAQSSQQFKFLNKA---  176 (439)
Q Consensus       111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~-~~--~----~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---  176 (439)
                      ++.++++.+++++.++.+++.++++  ++..    + ..  .    .+....+..... .     + ....+.+...   
T Consensus       178 ~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~-~~~~~~~~~~~~~  248 (475)
T TIGR00924       178 AVGMVIGLLTFFAGRHMLRDIGSVP--DPLSGQGKTYGKLLLALLAALALVFFCAWLM-H-----H-VVIANILLMTVTL  248 (475)
T ss_pred             HHHHHHHHHHHHHcccccccCCCCC--CCcchhhhhhHHHHHHHHHHHHHHHHHHHHH-h-----c-cHHHHHHHHHHHH
Confidence            9888888877777777665443222  1111    0 00  0    000100000000 0     0 0000000000   


Q ss_pred             -hhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-hhcccCCCCCccccchhhhhhHHH
Q 013611          177 -LLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQG-ATMDRTITRSIKIPAASLQLFIGI  254 (439)
Q Consensus       177 -~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~g~g~~~~~~~~~~in~~  254 (439)
                       ...+.  .... ...+.++ +++++..+++++++..+++|+.|+|+.++++.+. +++|++.+ ++.+|+++++++|++
T Consensus       249 ~~~~~~--~~~~-~~~~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~  323 (475)
T TIGR00924       249 AVIIFF--FRLA-FKPRLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPF  323 (475)
T ss_pred             HHHHHH--HHHH-HhccCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHH
Confidence             00000  0000 0001122 2344556688889999999999999999887554 45787777 889999999999999


Q ss_pred             HHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHH
Q 013611          255 GIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIP  334 (439)
Q Consensus       255 ~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  334 (439)
                      .++++.|+.++++.++.+|. .+   .+...|+.+|+++.++++..+++....    .++         +.++++||+++
T Consensus       324 ~iil~~p~~~~~~~~l~~~~-~~---~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~---------~~~~s~~~~i~  386 (475)
T TIGR00924       324 WVVVGSPVLAMIWTRLGRKG-KD---PTTPLKFTLGMLFCGASFLTFAASIWF----ADA---------GGLTSPWFMVL  386 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhCC-CC---CCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC---------CCccCHHHHHH
Confidence            99999999998776666542 22   467779999999999999888876321    100         12478999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHH
Q 013611          335 QYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFY  414 (439)
Q Consensus       335 ~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f  414 (439)
                      ++++.|+||++..|..++++++.+|+++||+++|++.+...+|+.+++.+.+.....                .+...+|
T Consensus       387 ~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~----------------~~~~~~~  450 (475)
T TIGR00924       387 IYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP----------------QGVTGVF  450 (475)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------cchhhHH
Confidence            999999999999999999999999999999999999999999999999888866421                2235578


Q ss_pred             HHHHHHHHHHHHHHHHHhccCcc
Q 013611          415 WLLAALSAGGLLAFLYFAKSYNR  437 (439)
Q Consensus       415 ~~~~~l~~l~~~i~~~~~~~~~~  437 (439)
                      ..+++++++.+++++.+.++++|
T Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~k  473 (475)
T TIGR00924       451 GKIGLVTLLVGVVMALMVPWLNR  473 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            88899999999999998888776

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=2.3e-31  Score=275.29  Aligned_cols=362  Identities=15%  Similarity=0.230  Sum_probs=257.9

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHH
Q 013611           32 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPC  111 (439)
Q Consensus        32 ~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~  111 (439)
                      .+.+.+++.++++|.|.++|+..++++++||+++++    |+++++++|++.|+|+++||.++|++.+++|||+.|.+++
T Consensus       112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~  187 (500)
T PRK09584        112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV  187 (500)
T ss_pred             HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            456778999999999999999999999999877643    6789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcceeeecCCCCCCcchhH------HHHHHHHh-HhhccccCcchhhcccccchhhhhhhhcC-CCC
Q 013611          112 AFMVAALVLFLLGTKTYRFSIKSKQRNPFARI------GRVFVVAI-KTRKATLASEDEAQSSQQFKFLNKALLAT-PDV  183 (439)
Q Consensus       112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  183 (439)
                      +.++++++.+++.++.+++..++.+.+|.+..      ..+..... ..+...        +.+   +.+...... ...
T Consensus       188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~~~~~~  256 (500)
T PRK09584        188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLH--------NQE---IARMALGVVALGI  256 (500)
T ss_pred             HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHh--------cch---HHHHHHHHHHHHH
Confidence            88888887776666655433111111222211      11111111 111000        000   000000000 000


Q ss_pred             CCCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh-cccCCCCCccccchhhhhhHHHHHHHHHH
Q 013611          184 SLEDG-KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGAT-MDRTITRSIKIPAASLQLFIGIGIITFIP  261 (439)
Q Consensus       184 ~~~~~-~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~-~~~~~g~g~~~~~~~~~~in~~~iii~~p  261 (439)
                      ..... ..++.++ +|+++.+..+.+++..++||+.|.|+++.+..|..+ ++++.. |+.+|+++++++|++.++++.|
T Consensus       257 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p  334 (500)
T PRK09584        257 VVIFGKEAFAMKG-AARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSP  334 (500)
T ss_pred             HHHHHHHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHH
Confidence            00000 0011122 345566666778888999999999999999887754 566666 8899999999999999999999


Q ss_pred             hhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHH
Q 013611          262 IYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGI  341 (439)
Q Consensus       262 l~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gi  341 (439)
                      +.++++.++.+|       .++.+|+.+|+++.++++..+.....+    .+++         ..++.+|+++++++.|+
T Consensus       335 ~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~~---------~~vs~~~~~~~~~l~~~  394 (500)
T PRK09584        335 ILAAIYNKMGDR-------LPMPHKFAIGMVLCSGAFLVLPLGAKF----ANDA---------GIVSVNWLIASYGLQSI  394 (500)
T ss_pred             HHHHHHHHhCcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCCC---------CccCHHHHHHHHHHHHH
Confidence            999987665544       367899999999999999998876431    1111         24788899999999999


Q ss_pred             HHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc-cccCCCCCCCCCCCcccchhhHHHHHHHHH
Q 013611          342 ADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE-ATSRDGGDSWFADNLNRAHLDYFYWLLAAL  420 (439)
Q Consensus       342 ge~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l  420 (439)
                      ||++.+|.+.+++.+.+|+++||++||+|++..++|+.+++.+.+.+.. ....++       ....+.+..+|..++++
T Consensus       395 ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~f~~~~~~  467 (500)
T PRK09584        395 GELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDP-------LMSLEVYGRVFLQIGIA  467 (500)
T ss_pred             HHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-------hhhhhhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888875531 100111       00112367788888888


Q ss_pred             HHHHHHHHHHHhccCcc
Q 013611          421 SAGGLLAFLYFAKSYNR  437 (439)
Q Consensus       421 ~~l~~~i~~~~~~~~~~  437 (439)
                      +++.+++++...++++|
T Consensus       468 ~~~~a~~~~~~~~~~~k  484 (500)
T PRK09584        468 TAVIAVLMLLTAPKLNR  484 (500)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88777777777776554

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.98  E-value=1.6e-32  Score=273.93  Aligned_cols=323  Identities=37%  Similarity=0.601  Sum_probs=224.8

Q ss_pred             CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 013611           27 PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALG  106 (439)
Q Consensus        27 ~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~  106 (439)
                      +...+.+.+++++.++++|+|++|||+.++++|||++++++   +|+++|+|+|+++|+|+++++.+.+++++++||.+.
T Consensus        28 ~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~---~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~  104 (372)
T PF00854_consen   28 PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS---RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLG  104 (372)
T ss_dssp             ------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT---HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh---hhhhhHHHHHHHHhhhhHhhcccchhhccccchhhh
Confidence            44556889999999999999999999999999999987422   399999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCcceeee-cCCCCCCcchhHH-HHHHHHhHhhccccCcchhhcccccchhhhhhhhcCC---
Q 013611          107 FGIPCAFMVAALVLFLLGTKTYRFS-IKSKQRNPFARIG-RVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATP---  181 (439)
Q Consensus       107 F~i~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  181 (439)
                      |.++++.+++++++++.++++|+.. +|++  ++..+.. .++..+.++.....|        +..+|++.......   
T Consensus       105 f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  174 (372)
T PF00854_consen  105 FGIPAIGMLLALIVFLSGRKRYRKVAPPGG--SPLTNFIKLVLVAAFKKRKLAVP--------KGSSWLDWALFQYSERS  174 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCTT--S-------S--S--SHHHHHHHHHHHCCCH---------HHHHHHHHHHHHHCCCC
T ss_pred             hhHHHHHHHHHHHHHHhCCcCCcCcCccCC--cccchhHHHHHHHHHHHhhcccc--------cchHHHHHhhhhhhhhh
Confidence            9999999999999999999988876 4444  6666633 334344444333221        11122222221100   


Q ss_pred             -C-------------CCCCCCCC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCC-ccccc
Q 013611          182 -D-------------VSLEDGKL-CTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRS-IKIPA  245 (439)
Q Consensus       182 -~-------------~~~~~~~~-~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g-~~~~~  245 (439)
                       .             .....+.. .+.+++++.|.+.+.++.+...+.|+..+.|...+...|..++|+..+ + +.+|+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~  253 (372)
T PF00854_consen  175 IFGIIVFIRAAVIFFPEIFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPP  253 (372)
T ss_dssp             CCCCCCHHHHHHHHCCCHHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------S
T ss_pred             hhhhhhhccchhhhhhhhhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc-ccccccc
Confidence             0             00001111 224567777778888888888888888888888878888878887777 6 89999


Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      ++++++|++.+++++|+++++++|+.++. .+   .+++.|+.+|+++..+++++....+.+|....++.|         
T Consensus       254 ~~l~~~n~i~iii~~pi~~~~~~p~~~~~-~~---~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~---------  320 (372)
T PF00854_consen  254 AWLQSFNPIFIIIFIPILDRVVYPLLRRG-IQ---PSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG---------  320 (372)
T ss_dssp             GGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T---------
T ss_pred             chhhhHHHHHHHHHHHHHHHHHhHHhhhc-cc---chhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC---------
Confidence            99999999999999999999999999832 33   589999999999999999999988876554444333         


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhh
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGV  376 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~i  376 (439)
                      ..+.+|+++.+++.+++|.+..+.+.+.+++.+|++..+.++|+|+....+
T Consensus       321 ~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~  371 (372)
T PF00854_consen  321 KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF  371 (372)
T ss_dssp             T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred             CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence            345588889999999999999998889888888888888888888776543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.75  E-value=9.2e-16  Score=154.02  Aligned_cols=289  Identities=13%  Similarity=0.109  Sum_probs=179.3

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG  108 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~  108 (439)
                      ..+.+.+.+.|+++|++.+...|...+++.|++|+++      |+++++++..+.++|.++||.+++.+.+.+|||+.|+
T Consensus        94 ~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~  167 (390)
T PRK03545         94 AWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFL  167 (390)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHH
Confidence            3467889999999999999999999999999999877      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611          109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG  188 (439)
Q Consensus       109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (439)
                      +.++..++..+..+...++    +|++++++..+                             +                
T Consensus       168 ~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~-----------------------------~----------------  198 (390)
T PRK03545        168 AIGGGALITLLLLIKLLPL----LPSEHSGSLKS-----------------------------L----------------  198 (390)
T ss_pred             HHHHHHHHHHHHHHHhCCC----CCCCCcchHHH-----------------------------H----------------
Confidence            9887666554433322121    11110010000                             0                


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611          189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV  268 (439)
Q Consensus       189 ~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~  268 (439)
                           .++...+.+......   .......+....+.......  + ..| ......+.+..+..+..++..++.+++. 
T Consensus       199 -----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~--~-~~g-~s~~~~~~~~~~~~~~~~~g~~~~g~l~-  265 (390)
T PRK03545        199 -----PLLFRRPALVSLYLL---TVVVVTAHFTAYSYIEPFVQ--Q-VAG-LSENFATLLLLLFGGAGIIGSVLFSRLG-  265 (390)
T ss_pred             -----HHHHhCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-hcC-CCccHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence                 001111111111111   11111111111121111111  1 111 0011223344444444454444444432 


Q ss_pred             hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611          269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV  348 (439)
Q Consensus       269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~  348 (439)
                         +|.       + ++++.++..+.+++........                     .+.+.+++..++.|++.....+
T Consensus       266 ---dr~-------~-~~~~~~~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~  313 (390)
T PRK03545        266 ---NRH-------P-SGFLLIAIALLLVCLLLLLPAA---------------------NSEWHLSVLSIFWGIAIMCIGL  313 (390)
T ss_pred             ---hcc-------c-hhHHHHHHHHHHHHHHHHHHHh---------------------chHHHHHHHHHHHHHHHhcchH
Confidence               332       1 2345566665555554433221                     2455666777888999887777


Q ss_pred             hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 013611          349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAF  428 (439)
Q Consensus       349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~  428 (439)
                      .....+.+..| +.+++++|+++....+|..+|+.+.|.+.+.                .++...|...+.+.+++.+++
T Consensus       314 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~----------------~g~~~~~~~~~~~~~~~~~~~  376 (390)
T PRK03545        314 AMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH----------------LGLSSIGYVGAALALAALVWS  376 (390)
T ss_pred             HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------cChhHHHHHHHHHHHHHHHHH
Confidence            77778888777 5889999999999999999999999988742                234567888888888888877


Q ss_pred             HHHhcc
Q 013611          429 LYFAKS  434 (439)
Q Consensus       429 ~~~~~~  434 (439)
                      +...|+
T Consensus       377 ~~~~~~  382 (390)
T PRK03545        377 ILIFRR  382 (390)
T ss_pred             HHHccc
Confidence            766654

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.73  E-value=1.2e-15  Score=153.97  Aligned_cols=293  Identities=15%  Similarity=0.119  Sum_probs=179.5

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+++.+++.|++.|...|...+++.|.+|+++      |++++++.+...++|..+||.+++++. .++|++.|++
T Consensus        97 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~  169 (400)
T PRK11646         97 HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCAT  169 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence            357788899999999999999999999999999876      999999999999999999999999998 6899999999


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      .++..++..++..+..++.+   ++.++++..+                            ++                 
T Consensus       170 ~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~----------------------------~~-----------------  201 (400)
T PRK11646        170 GAVLFVLAAAFNAWLLPAYK---LSTVRTPVRE----------------------------GM-----------------  201 (400)
T ss_pred             HHHHHHHHHHHHHHhCCccc---ccccchhhHH----------------------------HH-----------------
Confidence            88766655443332222111   0000000000                            00                 


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611          190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP  269 (439)
Q Consensus       190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~  269 (439)
                          ......+++..   ..+....++..+.+....++...+  + . + +.....+++..++....+.......+    
T Consensus       202 ----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~--~-~-~-~~~~~~g~l~~~~~~~~~~~~~~~~~----  265 (400)
T PRK11646        202 ----TRVLRDKRFVT---YVLTLTGYYMLAVQVMLMLPIMVN--D-I-A-GSPSAVKWMYAIEACLSLTLLYPIAR----  265 (400)
T ss_pred             ----HHHHcCchHHH---HHHHHHHHHHHHHHHHHhhhhhHH--h-h-c-CCchHHHHHHHHHHHHHHHHHHHHHH----
Confidence                00011111111   111112222222232222222111  1 1 1 11122334444444443332222222    


Q ss_pred             hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611          270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG  349 (439)
Q Consensus       270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~  349 (439)
                      +.+|+      .+..+++..+.++.++++..+...+                      +.++.++...+.++|+++..|.
T Consensus       266 ~~~~r------~~~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~l~~~g~~~~~p~  317 (400)
T PRK11646        266 WSEKR------FRLEHRLMAGLLIMSLSMFPIGMVS----------------------NLQQLFTLICLFYIGSIIAEPA  317 (400)
T ss_pred             HHHHh------cchhHHHHHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHHHHcc
Confidence            23322      1334456777777777766655432                      3444555567788999988888


Q ss_pred             hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 013611          350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFL  429 (439)
Q Consensus       350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~  429 (439)
                      ....+.+.+|++.||+++|+.++..++|+.+|+.+.|.+.+....            .+.....|+..+.+++++.+...
T Consensus       318 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  385 (400)
T PRK11646        318 RETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKA------------LNQPELPWMMLGIIGLITLLALY  385 (400)
T ss_pred             HHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhh------------cCCcchHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999998754210            01123456666666777666655


Q ss_pred             HHhc
Q 013611          430 YFAK  433 (439)
Q Consensus       430 ~~~~  433 (439)
                      ...|
T Consensus       386 ~~~~  389 (400)
T PRK11646        386 WQFS  389 (400)
T ss_pred             HHHh
Confidence            4333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.71  E-value=1.3e-14  Score=145.91  Aligned_cols=285  Identities=13%  Similarity=0.098  Sum_probs=178.8

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIP  110 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~  110 (439)
                      +...+++.|++.|+|.+...|+..+.+.+++|+++      |+++++++..+.++|..+|+.+++++.+.+||++.|++.
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  184 (399)
T PRK05122        111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI  184 (399)
T ss_pred             HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            45678999999999999999999999999999887      999999999999999999999999999999999998876


Q ss_pred             HHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCCC
Q 013611          111 CAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKL  190 (439)
Q Consensus       111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (439)
                      .+..++...   +.++ .+++++++  ++                             ..++                  
T Consensus       185 ~~~~~~~~~---~~~~-~~~~~~~~--~~-----------------------------~~~~------------------  211 (399)
T PRK05122        185 MLLALLGLL---LARP-RPAVPPVK--GE-----------------------------RLPF------------------  211 (399)
T ss_pred             HHHHHHHHH---HHhc-CCCCCCCC--cc-----------------------------chhH------------------
Confidence            654333222   2111 11111100  00                             0000                  


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhh
Q 013611          191 CTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPI  270 (439)
Q Consensus       191 ~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~  270 (439)
                           .+..|+.......+   ..+...+....+.......  +.+    . -..+.......+..++..++.+++.   
T Consensus       212 -----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~----~-~~~~~~~~~~~~~~~~~~~~~g~l~---  273 (399)
T PRK05122        212 -----RRVLGRVWPYGMGL---ALASIGFGTIATFITLYYA--ARG----W-DGAALALTLFGVAFVGARLLFGNLI---  273 (399)
T ss_pred             -----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--Hcc----c-ccchHHHHHHHHHHHHHHHHHHHHH---
Confidence                 00011111111110   1111111111122221111  111    1 0112233334444444444444433   


Q ss_pred             cccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhh
Q 013611          271 TRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGL  350 (439)
Q Consensus       271 ~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~  350 (439)
                       +|.       ++++.+.++.++.++++......                      .+.++.++..++.|++.....+..
T Consensus       274 -~r~-------~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~G~~~~~~~~~~  323 (399)
T PRK05122        274 -NRL-------GGLRVAIVSLLVEILGLLLLWLA----------------------PSPWMALIGAALTGFGFSLVFPAL  323 (399)
T ss_pred             -HHh-------ccHHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHhHHHHHHHH
Confidence             332       33345566767777766555443                      134556677788999998888777


Q ss_pred             HHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q 013611          351 QEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLY  430 (439)
Q Consensus       351 ~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~  430 (439)
                      ...+.+..|++.||+++|+++....+|..+++.+.+.+.+.                .++...|...+++.+++.++.+.
T Consensus       324 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        324 GVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW----------------FGYPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------cCHHHHHHHHHHHHHHHHHHHHH
Confidence            77788899999999999999999999999999988877642                23466777888888888777777


Q ss_pred             HhccCccC
Q 013611          431 FAKSYNRE  438 (439)
Q Consensus       431 ~~~~~~~~  438 (439)
                      ..+|.+++
T Consensus       388 ~~~~~~~~  395 (399)
T PRK05122        388 LYRRAPRA  395 (399)
T ss_pred             hccccccc
Confidence            66666554

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.70  E-value=3.6e-15  Score=148.12  Aligned_cols=317  Identities=13%  Similarity=0.055  Sum_probs=173.5

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIP  110 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~  110 (439)
                      +.+.++++|++.|+|.|...|...+++.+.+|+++      |++++++.....++|.++|+.+++++.+..+||+.|.+.
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  154 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE  154 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence            67889999999999999999999999999999876      999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCCC
Q 013611          111 CAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKL  190 (439)
Q Consensus       111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (439)
                      ++..++..++.++..++.+.++...  +  .+ .       +....         ...   ..|......   ....+. 
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~-~-------~~~~~---------~~~---~~~~~~~~~---~~~~~~-  206 (399)
T TIGR00893       155 GVLGIIWGVLWLKFIPDPPQKAKWL--T--EE-E-------KYIVV---------GGL---LAEQQGKGP---STPKKY-  206 (399)
T ss_pred             HHHHHHHHHHhhheecCCCCccccC--C--HH-H-------Hhhcc---------hhh---ccccccccc---cCCCcc-
Confidence            8666655544333222111100000  0  00 0       00000         000   000000000   000000 


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhh
Q 013611          191 CTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPI  270 (439)
Q Consensus       191 ~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~  270 (439)
                       +..+....++.   ....+........+....+.++....+   ..+ ......+.+..+..+..++..++.+++.+++
T Consensus       207 -~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  278 (399)
T TIGR00893       207 -QIKELLKDRRV---WGLALGQFLVNIGLGFFLTWFPTYLVQ---ERG-LSILEAGFMASLPGIVGFIGMILGGRLSDLL  278 (399)
T ss_pred             -chHHHhcCHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHH---Hhc-ccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00011111112   222222222222222222222221111   111 0122334555666666667777777776655


Q ss_pred             cccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhh
Q 013611          271 TRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGL  350 (439)
Q Consensus       271 ~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~  350 (439)
                      .+|+       .   .+........++..........       .+        ...+.+..+....+...+.+ ..+..
T Consensus       279 ~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~-------~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~  332 (399)
T TIGR00893       279 LRRG-------K---SLVFARKTAIIAGLVLSLLMFA-------TN--------YVNIPYAALALVALGFFGLG-AGAIG  332 (399)
T ss_pred             hhcc-------c---chhHHHHHHHHHHHHHHHHHHH-------hc--------cchhHHHHHHHHHHHHhchh-hhhHH
Confidence            4432       0   0111111111111111111000       00        00122333333333333333 67777


Q ss_pred             HHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q 013611          351 QEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLY  430 (439)
Q Consensus       351 ~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~  430 (439)
                      ..++.+..|++.||+++|+.+...++|+.+++.+.+.+.+..               +++...|...+++.+++.+.++.
T Consensus       333 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       333 WALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT---------------GSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             HHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC---------------CchhHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999886421               22466777777777777666554

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.70  E-value=5.7e-15  Score=148.67  Aligned_cols=299  Identities=12%  Similarity=0.089  Sum_probs=181.1

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+++.|++.|++.+ ..|...+.+.+++|+++      |++++++...+.++|.++||.+++++.+..+|++.|++
T Consensus       105 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  177 (408)
T PRK09874        105 QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI  177 (408)
T ss_pred             hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            467788999999999865 46888889999998876      99999999999999999999999999998999999999


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      .++..++..++.++..++..  +++++ +...                             ++.|...            
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~-----------------------------~~~~~~~------------  213 (408)
T PRK09874        178 TASVLFLCFLVTLFCIRENF--QPVSK-KEML-----------------------------HMREVVT------------  213 (408)
T ss_pred             HHHHHHHHHHHHHHHhccCc--ccccc-hhhh-----------------------------HHHHHHH------------
Confidence            88776665554333222111  11110 0000                             0000000            


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611          190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP  269 (439)
Q Consensus       190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~  269 (439)
                           ...+++ ...  .+......+........+.+............ ......+.+..+..+..++..|+.+++.+ 
T Consensus       214 -----~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~l~~~~~~~~~g~l~d-  283 (408)
T PRK09874        214 -----SLKNPK-LVL--SLFVTTLIIQVATGSIAPILTLYVRELAGNVS-NIAFISGMIASVPGVAALLSAPRLGKLGD-  283 (408)
T ss_pred             -----hCcCCc-hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence                 000011 111  01111111222221222222211111100100 00011223334444555555555555443 


Q ss_pred             hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611          270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG  349 (439)
Q Consensus       270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~  349 (439)
                         |.       ++++.+.++..+.+++++.....                      .+.+...+..++.|++++...+.
T Consensus       284 ---r~-------g~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~  331 (408)
T PRK09874        284 ---RI-------GPEKILITALIFSVLLLIPMSFV----------------------QTPLQLGILRFLLGAADGALLPA  331 (408)
T ss_pred             ---cc-------ccchhHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHhhhHhhHHH
Confidence               32       22334555655555554443332                      13455566678889999998888


Q ss_pred             hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 013611          350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFL  429 (439)
Q Consensus       350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~  429 (439)
                      ..+.+.+.+|++.+|+++|+++....+|..+|+.+.+.+.+.                .++...|...+++.+++.+..+
T Consensus       332 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~----------------~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        332 VQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN----------------YGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh----------------cchhHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999999999999999999988642                2346678888888888887776


Q ss_pred             HHhccCcc
Q 013611          430 YFAKSYNR  437 (439)
Q Consensus       430 ~~~~~~~~  437 (439)
                      ...+|.+.
T Consensus       396 ~~~~~~~~  403 (408)
T PRK09874        396 NSLRRRRI  403 (408)
T ss_pred             HHHHHhcC
Confidence            66665544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.69  E-value=1.7e-14  Score=145.47  Aligned_cols=299  Identities=14%  Similarity=0.110  Sum_probs=173.4

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+.+.|++.|++.|...|...+++.|++|+++      |++++++++.+.++|.++++.+++.+.+..+|++.|++
T Consensus       101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  174 (406)
T PRK11551        101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV  174 (406)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence            467788999999999999999999999999999877      99999999999999999999999999998999999998


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      .++..++..++.....++....++++  +.                          ..+.....+..             
T Consensus       175 ~~~~~~~~~~~~~~~l~~~~~~~~~~--~~--------------------------~~~~~~~~~~~-------------  213 (406)
T PRK11551        175 GGVGPLLLVPLLMRWLPESRAFAQAA--GA--------------------------GKQRAPVLRAL-------------  213 (406)
T ss_pred             HHHHHHHHHHHHHHhCCCChhHHhcc--Cc--------------------------chhhhhhHHHH-------------
Confidence            77654544433322112111000000  00                          00000000000             


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611          190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP  269 (439)
Q Consensus       190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~  269 (439)
                       ++  +. ..++...+   +.........+....+.++....  +.+..   ....+.+.....+..++...+.+++.++
T Consensus       214 -~~--~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~--~~g~s---~~~~~~~~~~~~~~~~~~~~~~g~l~dr  281 (406)
T PRK11551        214 -FG--EG-RATATLLL---WISYFFTLIVLYFLLNWLPSLLV--GQGLS---RSQAGLVQIAFNIGGALGSLLIGALMDR  281 (406)
T ss_pred             -hh--hh-hhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--hCCCC---hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00  00 00111111   11111111111111111111111  11111   1223344455555555555566665543


Q ss_pred             hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611          270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG  349 (439)
Q Consensus       270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~  349 (439)
                      +.+           ++.+.++.+..++++......                      .+.+.+.+..++.+++.....+.
T Consensus       282 ~g~-----------~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~  328 (406)
T PRK11551        282 LRP-----------RRVVLLIYAGILASLAALAAA----------------------PSFAGMLLAGFAAGLFVVGGQSV  328 (406)
T ss_pred             HhH-----------HHHHHHHHHHHHHHHHHHHhc----------------------CcHHHHHHHHHHHHHHHHhHHHH
Confidence            322           223333444444444333322                      13444555667777777777777


Q ss_pred             hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 013611          350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFL  429 (439)
Q Consensus       350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~  429 (439)
                      ..+++.+..|++.||+++|+.+....+|+.+|+.+.+.+.+..               +++...++..+...+++.++.+
T Consensus       329 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        329 LYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG---------------RSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC---------------CchHHHHHHHHHHHHHHHHHHH
Confidence            7788999999999999999999999999999999999886421               2234455555556666655555


Q ss_pred             HHhccC
Q 013611          430 YFAKSY  435 (439)
Q Consensus       430 ~~~~~~  435 (439)
                      ...+|-
T Consensus       394 ~~~~~~  399 (406)
T PRK11551        394 LLVSRP  399 (406)
T ss_pred             HHhcch
Confidence            554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.68  E-value=1.8e-15  Score=155.86  Aligned_cols=308  Identities=11%  Similarity=0.093  Sum_probs=180.1

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+...++++|++.|+|.|...|...+++.+.+|+++      |++++++++.+.++|..+||.+++++.++++||+.|++
T Consensus        88 ~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~  161 (485)
T TIGR00711        88 PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI  161 (485)
T ss_pred             CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence            467889999999999999999999999999999876      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHH-hHhhccccCcchhhcccccchhhhhhhhcCC-------
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVA-IKTRKATLASEDEAQSSQQFKFLNKALLATP-------  181 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  181 (439)
                      .++..++..++.++..++.   +++. .++.+.....+... .......      ....+..+|.+...+...       
T Consensus       162 ~~~~~~~~~~~~~~~~~~~---~~~~-~~~~d~~g~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  231 (485)
T TIGR00711       162 NVPIGIIVVVVAFFILPRD---KPAA-SENFDFLGLLLLSVGLGSLLYG------LSEGPERGWFDSNEILILSITGLVA  231 (485)
T ss_pred             hhHHHHHHHHHHHHHcCCc---cccc-cCCCcHHHHHHHHHHHHHHHHH------HhhCCCCCCCCchHHHHHHHHHHHH
Confidence            8876666555444333321   1111 12222211111100 0000000      011111223222110000       


Q ss_pred             --C----CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHH
Q 013611          182 --D----VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIG  255 (439)
Q Consensus       182 --~----~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~  255 (439)
                        .    +.+.+....+. +....+.+   ....+........+......++...+   ...| ......+.......+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~g-~s~~~~g~~~~~~~~~  303 (485)
T TIGR00711       232 IIAFVVWELTDDNPLVDL-RLFKYRNF---TIGCVYMSLLGLGLYGSFYLLPLYLQ---QVLG-YTALQAGLHILPVGLA  303 (485)
T ss_pred             HHHHHHHHHcCCCCccCH-HHHcCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHH---HhcC-CCHHHHHHHHHHHHHH
Confidence              0    00000000000 01111111   11111112222222222222222111   1111 1122234555666666


Q ss_pred             HHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHH
Q 013611          256 IITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQ  335 (439)
Q Consensus       256 iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  335 (439)
                      .++..++.+++.+    |.       ++++.+.+|..+.++++.++.....                  ...+.++.+..
T Consensus       304 ~~~~~~~~g~l~~----r~-------~~~~~~~~g~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~  354 (485)
T TIGR00711       304 PMLSSPIAGRMGD----KI-------DPRKLVTIGLILYAVGFYWRAFTFT------------------PDTPFLAIALP  354 (485)
T ss_pred             HHHHHHHHHHHHh----hc-------CcHHHHHHHHHHHHHHHHHHhccCC------------------CCCCHHHHHHH
Confidence            7777777776543    32       3344567777777777766552110                  12345566677


Q ss_pred             HHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          336 YLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       336 ~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                      .++.|+|.+...++....+.+..|++++|+++|+.++.+++|+.+|+.+.+.+.+
T Consensus       355 ~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       355 QFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999887777788899999999999999999999999999999987753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.68  E-value=2.8e-14  Score=144.59  Aligned_cols=295  Identities=9%  Similarity=-0.069  Sum_probs=176.2

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+.+.+++.|++.|...|...+.+.+.+|+++      |+++.++.+++.++|..+||.+++++.+..+|++.|.+
T Consensus       108 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~  181 (417)
T PRK10489        108 PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGL  181 (417)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence            356778889999999999999999999999998876      89999999999999999999999999988899999998


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCC--CCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQ--RNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLED  187 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (439)
                      .++..++..+..+..++    .+++++  .++..+                             ..+.            
T Consensus       182 ~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~-----------------------------~~~~------------  216 (417)
T PRK10489        182 AAAGTFITLLPLLRLPA----LPPPPQPREHPLRS-----------------------------LLAG------------  216 (417)
T ss_pred             HHHHHHHHHHHHHhCCC----CCCCCcccccchHH-----------------------------HHHH------------
Confidence            88766665544332211    111110  000000                             0000            


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhh
Q 013611          188 GKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIF  267 (439)
Q Consensus       188 ~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~  267 (439)
                           ...+.+.+.+ +..  ++.... ..........++...   ....+ ......+++.....+..++...+.+++.
T Consensus       217 -----~~~~~~~~~~-~~~--~~~~~~-~~~~~~~~~~~p~~~---~~~~g-~~~~~~g~~~~~~~~g~~ig~~~~~~l~  283 (417)
T PRK10489        217 -----FRFLLASPVV-GGI--ALLGGL-LTMASAVRVLYPALA---DEVWQ-MGAAQIGLLYAAVPLGAALGALTSGWLA  283 (417)
T ss_pred             -----HHHHHcChHH-HHH--HHHHHH-HHHHHhHHHhhHHHH---HhccC-CChhHhHHHHHHHHHHHHHHHHHHHHhh
Confidence                 0000011111 111  111111 111111112222111   11111 0012234455555555555544444432


Q ss_pred             hhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 013611          268 VPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTI  347 (439)
Q Consensus       268 ~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~  347 (439)
                          +|.       +..+.+..+.++.++++..+...                      .+.+...+..++.|++.+...
T Consensus       284 ----~~~-------~~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~  330 (417)
T PRK10489        284 ----HSA-------RPGLLMLLSTLGSFLAVGLFGLM----------------------PMWILAVLCLALFGYLSAISS  330 (417)
T ss_pred             ----hcc-------CcchHHHHHHHHHHHHHHHHHcc----------------------chHHHHHHHHHHHHHHHHHHH
Confidence                221       22334556666666665544432                      134445566777888888877


Q ss_pred             hhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 013611          348 VGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLA  427 (439)
Q Consensus       348 ~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i  427 (439)
                      +...+++.+.+|++.||+++|+++....+|+.+|+.+.|.+.+..                +....+...++..++..++
T Consensus       331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~----------------g~~~~~~~~~~~~~~~~~~  394 (417)
T PRK10489        331 LLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM----------------TPVASASASGFGLLIIGVL  394 (417)
T ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh----------------chhhHHHHHHHHHHHHHHH
Confidence            777788899999999999999999999999999999999887532                2233455555555555555


Q ss_pred             HHHHhccCcc
Q 013611          428 FLYFAKSYNR  437 (439)
Q Consensus       428 ~~~~~~~~~~  437 (439)
                      .+...+++++
T Consensus       395 ~~~~~~~~~~  404 (417)
T PRK10489        395 LLLVLGELRR  404 (417)
T ss_pred             HHHhcccccc
Confidence            5555455443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.68  E-value=7.2e-15  Score=151.08  Aligned_cols=321  Identities=13%  Similarity=0.101  Sum_probs=175.9

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-ccchhhhHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN-LNWALGFGI  109 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~-~g~~~~F~i  109 (439)
                      +...+++.|++.|+++|...|...+.+.+++|+++      |+++.++...+.++|.++|+.+++++.+. .+||+.|.+
T Consensus       130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i  203 (465)
T TIGR00894       130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV  203 (465)
T ss_pred             CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence            35678889999999999999999999999999887      99999999999999999999999999988 499999999


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      .++..++..++++...++.+..+++.  ++ .                           +.++++.......  ....+.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~p~~~~~~--~~-~---------------------------~~~~i~~~~~~~~--~~~~~~  251 (465)
T TIGR00894       204 FGIVGCAWSLLWFVFPADDPSIHPCI--SK-F---------------------------EKKYINSSLQGQK--GSTRQS  251 (465)
T ss_pred             hhHHHHHHHHHHHHHhcCCcccCCCC--CH-H---------------------------HHHHHHhhccccc--CCCCCC
Confidence            88776666554433222111111100  00 0                           0001100000000  000000


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611          190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP  269 (439)
Q Consensus       190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~  269 (439)
                       ....++...+.+.   .+.+....+...+....+.++..... ..+..   ....+.+..+..+..++..++.+++.++
T Consensus       252 -~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lp~~l~~-~~g~s---~~~~g~~~~~~~~~~~i~~~~~g~l~d~  323 (465)
T TIGR00894       252 -LPIKAIPKSLPVW---AIWFAIFGHFWLYTILPTYLPTFISW-VLRVS---GKENGLLSSLPYLFAWLCSIFAGYLADF  323 (465)
T ss_pred             -CCHHHHhcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcC---hHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0001111111111   11111111211122212222221111 11111   2234556667777778888888888877


Q ss_pred             hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611          270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG  349 (439)
Q Consensus       270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~  349 (439)
                      +.+|+..+   ....+++..+..+...+.........                   ..+.++.+....+.+.+.....+.
T Consensus       324 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~~~~~~~~~~~  381 (465)
T TIGR00894       324 LKSSKTLS---LTAARKIFNGIGGLGPGIFAYALPYL-------------------SAAFYLTIIILTLANAVSSGPLAG  381 (465)
T ss_pred             HHHcCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHc-------------------CCchHHHHHHHHHHHHHhhhhhhh
Confidence            65543111   01112222222221111111111100                   112333333344444444444444


Q ss_pred             hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 013611          350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFL  429 (439)
Q Consensus       350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~  429 (439)
                      ......+.+|+ ..|+++|+.++...+|+.++|.+.+.+.+..      .|       +.+...|.+.+++.+++.+++.
T Consensus       382 ~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~------~~-------~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       382 VLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQD------SK-------NVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             hhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCC------Cc-------hHHHHHHHHHHHHHHHHHHHee
Confidence            44455566776 8999999999999999999999988775321      01       3356678888888888887776


Q ss_pred             HHhc
Q 013611          430 YFAK  433 (439)
Q Consensus       430 ~~~~  433 (439)
                      ...+
T Consensus       448 ~~~~  451 (465)
T TIGR00894       448 IFGS  451 (465)
T ss_pred             eeec
Confidence            5433

>PRK12382 putative transporter; Provisional

Probab=99.68  E-value=4.7e-14  Score=141.65  Aligned_cols=279  Identities=10%  Similarity=0.126  Sum_probs=173.3

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+...++++|++.|+|.+...|...+.+.|.+|+++      |+++++++..+.++|.++||.+++++.+.+||++.+.+
T Consensus       110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  183 (392)
T PRK12382        110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT  183 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence            467789999999999999999999999999999877      99999999999999999999999999999999988776


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      ..+..++..   ++.++ .++++++++++  .                             ++.                
T Consensus       184 ~~~~~~~~~---~~~~~-~~~~~~~~~~~--~-----------------------------~~~----------------  212 (392)
T PRK12382        184 TMVLPLLAW---AFNGT-VRKVPAHAGER--P-----------------------------SLW----------------  212 (392)
T ss_pred             HHHHHHHHH---HHHHh-ccCCCCCcccC--c-----------------------------hHH----------------
Confidence            654332222   22111 11111110000  0                             000                


Q ss_pred             CCchhhHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611          190 LCTLEDVEEAKALLRL-IPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV  268 (439)
Q Consensus       190 ~~~~~~v~~~k~~~~~-l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~  268 (439)
                           +  ..|...+. ....+....+...    .........  +...    . ..+.......+..++..++.+++.+
T Consensus       213 -----~--~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~--~~~~----~-~~~~~~~~~~~~~~~~~~~~g~l~~  274 (392)
T PRK12382        213 -----S--VVGLIWKPGLGLALQGVGFAVI----GTFVSLYFA--SKGW----A-MAGFTLTAFGGAFVLMRVLFGWMPD  274 (392)
T ss_pred             -----H--HHHHHHHhHHHHHHHHHHHhHH----HHHHHHHHH--hcCC----c-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 0  00111100 0011111111111    111111111  1111    1 1222333444444555555555443


Q ss_pred             hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611          269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV  348 (439)
Q Consensus       269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~  348 (439)
                          |.       ++++.+..+..+.++++......                      .+.++..+..++.+++++...+
T Consensus       275 ----r~-------g~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~  321 (392)
T PRK12382        275 ----RF-------GGVKVAIVSLLVETVGLLLLWLA----------------------PTAWVALAGAALTGAGCSLIFP  321 (392)
T ss_pred             ----hc-------CCCeehHHHHHHHHHHHHHHHHc----------------------ccHHHHHHHHHHHHHHHHhHHH
Confidence                32       22344566777777766554432                      1344556677888999988888


Q ss_pred             hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 013611          349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAF  428 (439)
Q Consensus       349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~  428 (439)
                      .......+..|+++||+++|+++....+|+.+|+.+.+.+.+.                .++...|.+.+++.+++.++.
T Consensus       322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~  385 (392)
T PRK12382        322 ALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS----------------FGYPSVFLAGAISAVLGIIVT  385 (392)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hCchHHHHHHHHHHHHHHHHH
Confidence            7777888999999999999999999999999999999988642                234567777777777776665


Q ss_pred             HHHh
Q 013611          429 LYFA  432 (439)
Q Consensus       429 ~~~~  432 (439)
                      +...
T Consensus       386 ~~~~  389 (392)
T PRK12382        386 ILSF  389 (392)
T ss_pred             Hhhc
Confidence            5443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.68  E-value=7.8e-15  Score=152.10  Aligned_cols=307  Identities=14%  Similarity=0.099  Sum_probs=174.7

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.++++|.++|+|.|+..|...+.+.+.+++++     +|+++++++....++|..+||.+++++.++++|||.|++
T Consensus        92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i  166 (495)
T PRK14995         92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI  166 (495)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence            468889999999999999999999998988885432     299999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCC--------
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATP--------  181 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  181 (439)
                      +....++.+++.+...+..+.+  +  +++.+.....+.... .....+.    .+. ...+|++.......        
T Consensus       167 ~~~~~~~~~~l~~~~l~~~~~~--~--~~~~d~~g~~~~~~~-~~~l~~~----~~~-~~~~~~~~~~~~~~~~~~~~~l  236 (495)
T PRK14995        167 NVPIVLVVMGLTARYVPRQAGR--R--DQPLNLGHALMLIVA-ILLLVYS----AKT-ALKGFLSLWVTSLTLLTGALLL  236 (495)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCC--C--CCCCChHhHHHHHHH-HHHHHHH----HHh-ccccCCchHHHHHHHHHHHHHH
Confidence            8877666655443333321111  1  122221111111000 0000000    000 00011111100000        


Q ss_pred             -C----CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHH
Q 013611          182 -D----VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGI  256 (439)
Q Consensus       182 -~----~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~i  256 (439)
                       .    +.+......+.+ .-..+.+..   ..+........+......++..   +....| ......+.......+..
T Consensus       237 ~~f~~~e~~~~~p~~~~~-lf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---lq~v~g-~s~~~ag~~~~~~~~~~  308 (495)
T PRK14995        237 GLFIRTQLAASRPMIDMR-LFTHRIILS---GVVMAMTAMITLVGFELLMAQE---LQFVHG-LSPLEAGMFMLPVMVAS  308 (495)
T ss_pred             HHHHHHHhcCCCCCcCHH-HhCCcccHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHcC-CCHHHHHHHHHHHHHHH
Confidence             0    000000001111 111111111   1111111111111111111211   111111 11233444555556666


Q ss_pred             HHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHH
Q 013611          257 ITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQY  336 (439)
Q Consensus       257 ii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  336 (439)
                      .+..|+.+++.+    |.       ++++.+..|+++.++++..+.....                   ..+.+...+..
T Consensus       309 ~~~~~~~g~l~~----r~-------g~~~~~~~g~~~~~~~~~~l~~~~~-------------------~~~~~~~~~~~  358 (495)
T PRK14995        309 GFSGPIAGILVS----RL-------GLRLVATGGMALSALSFYGLAMTDF-------------------STQQWQAWGLM  358 (495)
T ss_pred             HHHHHHHHHHHH----Hc-------CchHHHHHHHHHHHHHHHHHHHhcC-------------------CCchHHHHHHH
Confidence            666677776554    32       2234556777777777665554321                   12344456677


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          337 LLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       337 ~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      ++.|+|.++..++....+.+.+|++.+|.+++++++.+++|+.+|+.+.+.+.
T Consensus       359 ~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        359 ALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999998888889999999999999999999999999999999999774

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.68  E-value=1.1e-14  Score=143.54  Aligned_cols=271  Identities=13%  Similarity=0.077  Sum_probs=167.6

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIP  110 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~  110 (439)
                      +.+.+++.|++.|++.+...|...+++.|++|+++      |+++++++..+.++|.++||.+++++.+..+|++.|++.
T Consensus        91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  164 (365)
T TIGR00900        91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD  164 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            67889999999999999999999999999999876      999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCCC
Q 013611          111 CAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKL  190 (439)
Q Consensus       111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (439)
                      ++..++..+..+..+.+  + +++.++++..+                        ....+..+.               
T Consensus       165 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~------------------------~~~~~~~~~---------------  202 (365)
T TIGR00900       165 AVGFAISALLIVSVRIP--E-LAASEIQALSN------------------------AVLRDTREG---------------  202 (365)
T ss_pred             HHHHHHHHHHHHhcccc--c-CCCccccccch------------------------hHHHHHHhH---------------
Confidence            87666555443332211  1 11100000000                        000000000               


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611          191 CTLEDVEEAKALLRLIPIWATCLVYAIVFAQYT-TFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP  269 (439)
Q Consensus       191 ~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~-~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~  269 (439)
                        .+...+.+.+..   .......+...+.... ...+....+. .+..   ....+.+.....+..++..++.+++.  
T Consensus       203 --~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~--  271 (365)
T TIGR00900       203 --IKFVLKNPLLRT---LLLLALLFNLVFAPAIVALFPYVQSKY-LGRG---STHYGWVLAAFGLGALLGALLLGLLG--  271 (365)
T ss_pred             --HHHHHcCcHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCc---hHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence              000111111111   1111222222221111 1111111100 1111   12234445555555555555554432  


Q ss_pred             hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611          270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG  349 (439)
Q Consensus       270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~  349 (439)
                        +|.       +.++.+..+.++.++++.......                    + +.+...+..++.|++.....+.
T Consensus       272 --~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-~~~~~~~~~~~~g~~~~~~~~~  321 (365)
T TIGR00900       272 --RYF-------KRMALMTGAIFVIGLAILVVGLTP--------------------P-NFPLFLVLWFAIGVGYGPINVP  321 (365)
T ss_pred             --HHh-------chhHHHHHHHHHHHHHHHHHHhhc--------------------h-hHHHHHHHHHHHHHHHHHHHHH
Confidence              222       233444556666666655554431                    1 3556677788999999999888


Q ss_pred             hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                      ...++.+.+|++.||+++|+++....+|+.+++.+.+.+.+
T Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       322 QGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999998763

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.67  E-value=6e-14  Score=140.60  Aligned_cols=283  Identities=10%  Similarity=-0.031  Sum_probs=178.8

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG  108 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~  108 (439)
                      ..+.+.+++.+.+.+.+.+...|...++..+.  +++      |+++++......++|.++||.+++++.+.+|||..|.
T Consensus        91 ~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~  162 (382)
T TIGR00902        91 AHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA  162 (382)
T ss_pred             hhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence            45678888999999999999999998886543  223      8899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611          109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG  188 (439)
Q Consensus       109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (439)
                      +..+...+....+.. ++..   +|+++++.                           ++...+                
T Consensus       163 ~~~~~~~~~~~~~~~-~~~~---~~~~~~~~---------------------------~~~~~~----------------  195 (382)
T TIGR00902       163 ILTAGLAFMLIGFLI-KPTI---PPKDAIPE---------------------------DESQGD----------------  195 (382)
T ss_pred             HHHHHHHHHHHHHHc-CCCC---CCCccccc---------------------------cccccc----------------
Confidence            876543333322221 1110   11110000                           000000                


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611          189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV  268 (439)
Q Consensus       189 ~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~  268 (439)
                        .+..++...|++..   +.+.....+..+.+..+..+...+  +  .| ......+.+..+..+..++..++.++   
T Consensus       196 --~~~~~~l~~~~~~~---~l~~~~l~~~~~~~~~~~~~~~l~--~--~g-~s~~~~g~l~~~~~~~~i~~~~~~~~---  262 (382)
T TIGR00902       196 --SAFIALLKNPMNLR---FLAAVCLIQGAHAAYYGFSAIYWQ--A--AG-ISASATGLLWGIGVLAEIIIFAFSNK---  262 (382)
T ss_pred             --hhHHHHHcChHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--H--CC-CCHhHHHHHHHHHHHHHHHHHHHhHH---
Confidence              00001111122222   222233333444444443333222  1  22 11222344444555555554444444   


Q ss_pred             hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611          269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV  348 (439)
Q Consensus       269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~  348 (439)
                       +.+|       .+.++.+.+|.++.++....+.+.+                      +.+++++.++++|+.+++..+
T Consensus       263 -l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~q~l~g~~~~~~~~  312 (382)
T TIGR00902       263 -LFQN-------CSARDLLLISAIACVGRWAIIGAIE----------------------AFPLIFLLQILHCGTFAVCHL  312 (382)
T ss_pred             -HHhh-------CCHHHHHHHHHHHHHHHHHHHHhHh----------------------hHHHHHHHHHHHHHHHHHHHH
Confidence             3344       3556677888888888887776542                      566677778999999999988


Q ss_pred             hhHHHHHhhcChhhHHHHHHHHH-HHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 013611          349 GLQEFFYDQIPKELKSFGLSIYM-SVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLA  427 (439)
Q Consensus       349 ~~~~~~~~~aP~~~~g~~~gl~~-~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i  427 (439)
                      ....++.+. |++.+++++|+++ ...++|..+|+.++|.+.+..               +  ...|+..+++++++.++
T Consensus       313 ~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---------------g--~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       313 AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---------------G--AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------c--HHHHHHHHHHHHHHHHH
Confidence            888999988 9999999999986 577899999999999887531               1  24577777777766433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.66  E-value=1.7e-15  Score=154.18  Aligned_cols=315  Identities=18%  Similarity=0.192  Sum_probs=200.0

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-ccchhhhHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN-LNWALGFGI  109 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~-~g~~~~F~i  109 (439)
                      +...+++.|+++|+++|...|+...+.+.|.|++|      |+++.++.+.+..+|.+++..++|++.+. +||+.+|++
T Consensus       127 ~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~  200 (466)
T KOG2532|consen  127 GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYV  200 (466)
T ss_pred             cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHH
Confidence            44567999999999999999999999999999988      99999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      .++..++..+++++.   +.++ |++  +|..                        ..++.+++++.+.....  +    
T Consensus       201 ~g~~g~i~~~~w~~~---~~d~-P~~--h~~i------------------------s~~El~~I~~~k~~~~~--~----  244 (466)
T KOG2532|consen  201 FGIVGLIWFILWFLF---YSDS-PSK--HPNI------------------------SEKELKYIEKGKSEAHV--K----  244 (466)
T ss_pred             HHHHHHHHHHHHHHH---hcCC-ccc--CCCC------------------------CHHHHHHHHhccccccc--C----
Confidence            998888777766542   2222 222  2111                        01111222222211100  0    


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCcc-ccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611          190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIK-IPAASLQLFIGIGIITFIPIYDCIFV  268 (439)
Q Consensus       190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~-~~~~~~~~in~~~iii~~pl~~~~~~  268 (439)
                         +......|++++-.+++...+..+.-...........+.++...+  ++. -..|++.+++.+...+.-.+.+.+.+
T Consensus       245 ---~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL--~f~v~~~G~~salP~l~~~~~k~~~g~lsD  319 (466)
T KOG2532|consen  245 ---KKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL--GFDVRETGFLSALPFLAMAIVKFVAGQLSD  319 (466)
T ss_pred             ---CCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh--CCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence               000113445555544444333322222222222222223333222  222 34578888999998888888888888


Q ss_pred             hhcccccCCCCCCCchhHH--hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHH-
Q 013611          269 PITRYFTQNPSGITMLQRI--GAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVF-  345 (439)
Q Consensus       269 ~~~~k~~~~~~~~~~~~~i--~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l-  345 (439)
                      ++..| ...   .+..+|+  .+++...++.++.+++...              +      .. +  .+.++.+++.++ 
T Consensus       320 ~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~~--------------~------~~-~--~a~~~l~~~~~~~  372 (466)
T KOG2532|consen  320 RLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTSD--------------E------HR-L--LAVILLTIAIGLS  372 (466)
T ss_pred             HHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecCC--------------C------cc-h--HHHHHHHHHHHHc
Confidence            87766 222   1333344  4666666666666665421              0      11 1  223333443333 


Q ss_pred             -HhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 013611          346 -TIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGG  424 (439)
Q Consensus       346 -~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~  424 (439)
                       ....+...-....-+++.+..+|+.+...++.+.++|.+++.+.. ..  ...+|          ...|++.+++.+++
T Consensus       373 g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~--t~~eW----------~~VF~i~a~i~~~~  439 (466)
T KOG2532|consen  373 GFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DN--TREEW----------RIVFLIAAGILIVG  439 (466)
T ss_pred             ccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC--CHHHH----------HHHHHHHHHHHHHh
Confidence             344443333333267889999999999999999999999998874 11  12234          77899999999999


Q ss_pred             HHHHHHHh
Q 013611          425 LLAFLYFA  432 (439)
Q Consensus       425 ~~i~~~~~  432 (439)
                      .++|.++.
T Consensus       440 ~i~f~~f~  447 (466)
T KOG2532|consen  440 NIIFLFFG  447 (466)
T ss_pred             chheeEee
Confidence            98888774

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.66  E-value=1.6e-14  Score=164.36  Aligned_cols=288  Identities=10%  Similarity=0.012  Sum_probs=167.9

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+++.|+++|++.++..|...+++.+++++++      |++++++..++.++|.++||.++|++.+..+|++.|.+
T Consensus       106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~  179 (1140)
T PRK06814        106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL  179 (1140)
T ss_pred             hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            468899999999999999999999999999999987      99999999999999999999999999999999999955


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      .++..++++++.+...+    .+++.+......                            ...+.....          
T Consensus       180 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----------------------------~~~~~~~~~----------  217 (1140)
T PRK06814        180 LMGIAVLGWLASLFIPK----TGNAAPDLKIDR----------------------------NIIRSTITL----------  217 (1140)
T ss_pred             HHHHHHHHHHHHhhCCC----CCCCCCCCeecc----------------------------chHHHHHHH----------
Confidence            55444444433332211    111110000000                            000000000          


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611          190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP  269 (439)
Q Consensus       190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~  269 (439)
                         ...+...+.++.   ..+....++..+....+.++....   ..++ ......+++.....+..++...+.+++.. 
T Consensus       218 ---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~---~~~g-~~~~~~g~~~~~~~~g~~ig~~~~g~l~~-  286 (1140)
T PRK06814        218 ---LKYAKADKRIWL---AILGISWFWLVGAVVLSQLPLLAK---ETLG-GDENVATLFLAVFSVGVAVGSFLASKLSE-  286 (1140)
T ss_pred             ---HHHHhcCchHHH---HHHHHHHHHHHHHHHHHHhHHHHH---HHcC-CchHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence               000011111111   111112222222222222222111   1111 11223456667777777776666666532 


Q ss_pred             hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611          270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLI-DKPNVTIPTSVWWLIPQYLLCGIADVFTIV  348 (439)
Q Consensus       270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~l~gige~l~~~  348 (439)
                         ++       ...+.+.+|.++.++..+.+.+.....   ....... .--......+.|++++..++.|++.++..+
T Consensus       287 ---~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  353 (1140)
T PRK06814        287 ---GR-------ITLLYVPIGALLMGLFGLDLAFASSSV---PAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIV  353 (1140)
T ss_pred             ---Cc-------eeeeeehHHHHHHHHHHHHHHhccccc---ccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHH
Confidence               21       112233444444444433333210000   0000000 000000012456677888889999999998


Q ss_pred             hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      ...+.+++.+|++++|+++|+.++..++|..+|+.+++.+.
T Consensus       354 ~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        354 PLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             HHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999988875

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.65  E-value=1.5e-13  Score=137.59  Aligned_cols=283  Identities=11%  Similarity=0.031  Sum_probs=171.0

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG  108 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~  108 (439)
                      ..+.+.+++.|.+.+++.+...|...++..++  +++      |+++++...+..++|.++||.+++++.+++|||..|+
T Consensus        91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~  162 (382)
T PRK11128         91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILW  162 (382)
T ss_pred             cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence            35678888899999999999999999888876  223      7889999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611          109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG  188 (439)
Q Consensus       109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (439)
                      +.++..++..+..+. .++   ++|+++.++                        ..+....+                 
T Consensus       163 ~~~~~~~~~~~~~~~-~~~---~~~~~~~~~------------------------~~~~~~~~-----------------  197 (382)
T PRK11128        163 ILTAGVASMLLGQLL-RPT---IMPQGESRQ------------------------QESAGWPA-----------------  197 (382)
T ss_pred             HHHHHHHHHHHHHHc-cCC---CCCcccccc------------------------ccccccch-----------------
Confidence            877654444433222 111   111110000                        00000000                 


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611          189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV  268 (439)
Q Consensus       189 ~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~  268 (439)
                          ..+..+.|+++...   +........+....+..+....  +  .| ......+.+..++.+..++...+.+++  
T Consensus       198 ----~~~i~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~--~--~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l--  263 (382)
T PRK11128        198 ----WKALLKEPTVWRFL---LCVSLLQGSHAAYYGFSAIYWQ--A--AG-YSASTIGYLWSLGVVAEVLIFAFSNRL--  263 (382)
T ss_pred             ----HHHHHcChhHHHHH---HHHHHHHHHhHhHHHHHHHHHH--H--CC-CCHhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence                01111222222221   1122222222222222222211  1  11 112223455555555555544444444  


Q ss_pred             hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611          269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV  348 (439)
Q Consensus       269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~  348 (439)
                        .+|+       +.++.+.++.++.++++..+...                      .+.|+.++..++.|+++++..+
T Consensus       264 --~~r~-------~~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~  312 (382)
T PRK11128        264 --FRRW-------SARDLLLLSAICGVVRWGLMGST----------------------TALPWLIVIQILHCGTFTVCHL  312 (382)
T ss_pred             --HHHC-------CHHHHHHHHHHHHHHHHHHHHhh----------------------hhHHHHHHHHHHHHHHHHHHHH
Confidence              3442       44455677777777776655543                      2466677788999999999988


Q ss_pred             hhHHHHHhhcChhhHHHHHHHHH-HHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 013611          349 GLQEFFYDQIPKELKSFGLSIYM-SVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLA  427 (439)
Q Consensus       349 ~~~~~~~~~aP~~~~g~~~gl~~-~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i  427 (439)
                      ....++.+. |++.+++++++.+ +..++|..+|+.+.|.+.+..               +  ...|+..+++.+++.++
T Consensus       313 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~---------------g--~~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        313 AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL---------------G--AGVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------c--HHHHHHHHHHHHHHHHH
Confidence            888888876 6666799999886 667888899999999887532               1  23566666666665444

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.64  E-value=2e-13  Score=137.43  Aligned_cols=84  Identities=7%  Similarity=0.131  Sum_probs=76.2

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG  108 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~  108 (439)
                      ..+.+.+++.|++.|++.|...|...+++.|++|+++      |+++.++...+.++|.++||.+++++.+.+|||+.|+
T Consensus       105 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~  178 (394)
T PRK10213        105 ANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFN  178 (394)
T ss_pred             HChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence            3578889999999999999999999999999999877      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 013611          109 IPCAFMVAAL  118 (439)
Q Consensus       109 i~~~~~~i~~  118 (439)
                      +.++..++..
T Consensus       179 ~~~~l~~~~~  188 (394)
T PRK10213        179 AAAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHHH
Confidence            9876555444

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.63  E-value=1.3e-13  Score=137.57  Aligned_cols=86  Identities=19%  Similarity=0.122  Sum_probs=72.7

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+...+.+.|++.|+|+|.. +...+..++++|+++      |++++++...+.++|.++++.+++++.+.+|||+.|.+
T Consensus        77 ~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~  149 (368)
T TIGR00903        77 FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP  149 (368)
T ss_pred             ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            36889999999999999974 555566699999876      99999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHH
Q 013611          110 PCAFMVAALVLFL  122 (439)
Q Consensus       110 ~~~~~~i~~~l~~  122 (439)
                      .++..++..++++
T Consensus       150 ~~~l~~~~~~~~~  162 (368)
T TIGR00903       150 IAAVAAAGIILVL  162 (368)
T ss_pred             HHHHHHHHHHHHH
Confidence            7766555544433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.63  E-value=3e-13  Score=136.46  Aligned_cols=271  Identities=11%  Similarity=-0.021  Sum_probs=158.9

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+++.|++.|++.+...|...+.+.|.+|+++      |.+++++.+...++|..+||.+++++.+..+||+.|++
T Consensus        99 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~  172 (406)
T PRK15402         99 QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL  172 (406)
T ss_pred             ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence            356778899999999999999999999999998876      88999999999999999999999999998999999998


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      .++..++..+..+...++.+.  +++++.+..+                             ..+..             
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----------------------------~~~~~-------------  208 (406)
T PRK15402        173 FAALAALSFFGLWRAMPETAG--RVGEKLSLKE-----------------------------LGRDY-------------  208 (406)
T ss_pred             HHHHHHHHHHHHHHhCCCCCc--cccccccHHH-----------------------------HHHHH-------------
Confidence            887766655543332221110  0000000000                             00000             


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611          190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP  269 (439)
Q Consensus       190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~  269 (439)
                          ..+...+++..   ..+........+....+..+....+ +....   ....+.......+..++..++.+++   
T Consensus       209 ----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~~---~~~~g~~~~~~~~~~~~g~~~~g~l---  274 (406)
T PRK15402        209 ----KLVLKNRRFVA---GALALGLVSLPLLAWIALSPVILIS-GEQLS---SYEYGLLQVPVFGALIAGNLTLARL---  274 (406)
T ss_pred             ----HHHHcCcHHHH---HHHHHHHHHHHHHHHHHHhHHHHHH-HhCCC---HHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence                00001111111   1111111111111111111111100 01110   1112222222222333333344443   


Q ss_pred             hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611          270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG  349 (439)
Q Consensus       270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~  349 (439)
                       .+|.       +.++.+.+|.++.+++..+.......                 ...+.+|.++..++.++|++...+.
T Consensus       275 -~~r~-------~~~~~~~~~~~~~~~g~~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~g~~~~~~~  329 (406)
T PRK15402        275 -TSRR-------PLRSLIRMGLWPMVAGLLLAALATVI-----------------SSHAYLWLTAGLSLYAFGIGLANAG  329 (406)
T ss_pred             -HHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHc-----------------ccccHHHHHHHHHHHHHHHHHHhhh
Confidence             2332       34455677777777777666654210                 0124667778889999999998777


Q ss_pred             hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                      .+..+.. .+++++|++.+++++.+.+|+.+|+.+.+.+.+
T Consensus       330 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        330 LYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             HHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            6665544 455999999999999999999999999998764

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.62  E-value=2.4e-13  Score=132.86  Aligned_cols=264  Identities=19%  Similarity=0.262  Sum_probs=186.3

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+.+.+++.|++.+...|...++..|.+|+++      |++++++.+...++|..+||.+++++.+..+|++.|.+
T Consensus        85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  158 (352)
T cd06174          85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI  158 (352)
T ss_pred             ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            457788999999999999999999999999999977      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      .++..++..+...+..         +                                                      
T Consensus       159 ~~~~~~~~~~~~~~~~---------~------------------------------------------------------  175 (352)
T cd06174         159 LAILGLLLALLLLFLL---------R------------------------------------------------------  175 (352)
T ss_pred             HHHHHHHHHHHHHHHH---------H------------------------------------------------------
Confidence            8877666655433211         0                                                      


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611          190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP  269 (439)
Q Consensus       190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~  269 (439)
                                 +...   ..+........+.......+....+. .+   ......+.+..+..+..++..++.+++.++
T Consensus       176 -----------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  237 (352)
T cd06174         176 -----------LLLL---LALAFFLLSFGYYGLLTYLPLYLQEV-LG---LSAAEAGLLLSLFGLGGILGALLGGLLSDR  237 (352)
T ss_pred             -----------HHHH---HHHHHHHHHhHHHHHHHHHHHHHHHh-cC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       0000   11111111111111111111111110 01   112334556667777777777776665543


Q ss_pred             hcccccCCCCCCCchh-HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611          270 ITRYFTQNPSGITMLQ-RIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV  348 (439)
Q Consensus       270 ~~~k~~~~~~~~~~~~-~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~  348 (439)
                      ..+           ++ .+.++..+..+++......+                      +.++..+..++.++++....+
T Consensus       238 ~~~-----------~~~~~~~~~~~~~i~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~  284 (352)
T cd06174         238 LGR-----------RRLLLLIGLLLAALGLLLLALAP----------------------SLALLLVALLLLGFGLGFAFP  284 (352)
T ss_pred             HHh-----------hhHHHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHhccch
Confidence            322           23 56677777777776666542                      356677888999999999999


Q ss_pred             hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 013611          349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAF  428 (439)
Q Consensus       349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~  428 (439)
                      ....++.+..|++.|++++|+.+...++|+.+++.+.+.+.+.                .++...|...+++.+++.+++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~----------------~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT----------------GGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------cCcchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988632                223456777777777776654


Q ss_pred             H
Q 013611          429 L  429 (439)
Q Consensus       429 ~  429 (439)
                      .
T Consensus       349 ~  349 (352)
T cd06174         349 L  349 (352)
T ss_pred             e
Confidence            3

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10054 putative transporter; Provisional

Probab=99.62  E-value=1.2e-13  Score=139.12  Aligned_cols=265  Identities=12%  Similarity=0.075  Sum_probs=157.4

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+++.+.+.+.+.+...|+..+...|.+++++      |++++++.+...|+|.++||.+++++.+ .+|+..|.+
T Consensus        94 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~  166 (395)
T PRK10054         94 NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWL  166 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHH
Confidence            345566777888888888889999999999998776      9999999999999999999999999875 799999998


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      .++..++.+++..+..++.   +|++++++ ..                            .+ +               
T Consensus       167 ~~~~~~i~~i~~~~~~~~~---~~~~~~~~-~~----------------------------~~-~---------------  198 (395)
T PRK10054        167 AAICSAFPLVFIQIWVQRS---EKAIATET-GS----------------------------VW-S---------------  198 (395)
T ss_pred             HHHHHHHHHHHHHHHHhcc---ccccccch-hh----------------------------hh-h---------------
Confidence            8877776654332222211   11110000 00                            00 0               


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611          190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP  269 (439)
Q Consensus       190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~  269 (439)
                         ..+..+.|+++.   +..........+....+.........+ +.+ ......+.+..++....+...+..++    
T Consensus       199 ---~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~g~~~~~~~~~~~~~~~~~g~----  266 (395)
T PRK10054        199 ---PSVLLQDKALLW---FTCSGFLASFVSGAFASCISQYVMVVA-DSD-FAEKVVAVVLPVNAAMVVSLQYSVGR----  266 (395)
T ss_pred             ---hhhhccCceehH---HHHHHHHHHHHHHHhhhhHHHHHHHhc-ccc-hHHHHHHHHHHhhhhheeeehhHHHH----
Confidence               000011111111   111111111111111111111111111 111 00112233444444444443333333    


Q ss_pred             hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611          270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG  349 (439)
Q Consensus       270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~  349 (439)
                      +.+|+       ++++.+..|+.+.++++.......                     .+.+...+..++.++|+....|.
T Consensus       267 ~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~~~p~  318 (395)
T PRK10054        267 RLNAA-------NIRPLMTAGTLCFVIGLVGFIFSG---------------------NSLLLWGMSAAVFTVGEIIYAPG  318 (395)
T ss_pred             HHccC-------CchhHHHHHHHHHHHHHHHHHHcc---------------------hHHHHHHHHHHHHHHHHHHHHhh
Confidence            33332       344566777777777765554321                     13444456678999999998888


Q ss_pred             hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                      ..+.+.+.+|++++|++.|..+ ...+|..+||.+.|.+.+
T Consensus       319 ~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~  358 (395)
T PRK10054        319 EYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT  358 (395)
T ss_pred             HHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence            8889999999999999998766 455899999999998875

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.61  E-value=2.5e-13  Score=134.92  Aligned_cols=287  Identities=14%  Similarity=0.106  Sum_probs=162.9

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhh--HHHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF--FNWWYFGISFGANSTILVVIYIQDNLNWALG  106 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~--f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~  106 (439)
                      ..+.+.+++.+.+++.+.+...|...++..++.|+++      |.++  .++.+.+.++|..+||.+++++.+.++||+.
T Consensus        84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~  157 (375)
T TIGR00899        84 NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVM  157 (375)
T ss_pred             cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHH
Confidence            3456777888888888888889999998888877654      5443  6888889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCC
Q 013611          107 FGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLE  186 (439)
Q Consensus       107 F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (439)
                      |++.++..++..++.++..++.+.+++++  +                             +..++              
T Consensus       158 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------------------------~~~~~--------------  192 (375)
T TIGR00899       158 FLTAALAFVLCGVLVWLFLPSYPRGAPGA--L-----------------------------TRLEV--------------  192 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcccCcccc--c-----------------------------Ccchh--------------
Confidence            99988766665554433222211100000  0                             00000              


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhh
Q 013611          187 DGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCI  266 (439)
Q Consensus       187 ~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~  266 (439)
                             .+....+.. +.  ++......+..+......++....+ +.+..   ....+.+..+.....+...++.+++
T Consensus       193 -------~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~---~~~~g~~~~~~~~~~~~~~~~~g~l  258 (375)
T TIGR00899       193 -------RGLLASRDT-RL--LFVACTLMWGCNILYIINMPLLIIH-ELGLP---DKLAGLMMGTAAGLEIPFMLLAGYL  258 (375)
T ss_pred             -------hhhhcCcch-HH--HHHHHHHHHHHHHHHHhhhHHHHHH-HcCCC---HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence                   000001111 11  1111111121111111111111100 11110   1112333334444444444444554


Q ss_pred             hhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 013611          267 FVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFT  346 (439)
Q Consensus       267 ~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~  346 (439)
                      .    +|.       +.++.+.++.++..+.+......                      .+.+..+...++.+++.+..
T Consensus       259 ~----~r~-------g~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~g~~  305 (375)
T TIGR00899       259 I----KRF-------GKRRLMLLAALAGVAFYTGLAAD----------------------NSLWALLMLQLLNAIFIGIL  305 (375)
T ss_pred             H----HHh-------cchhHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
Confidence            4    332       22233444544444333332221                      13444555667788888887


Q ss_pred             hhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 013611          347 IVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLL  426 (439)
Q Consensus       347 ~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~  426 (439)
                      .+....++.+..|++ +++++|+++...++|..+++.+.+.+.+.                .++...|++.++..+++.+
T Consensus       306 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~----------------~g~~~~~~~~~~~~~~~~~  368 (375)
T TIGR00899       306 AGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAER----------------WSYHAVYWFAIVMLIVALF  368 (375)
T ss_pred             HHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------ccchhHHHHHHHHHHHHHH
Confidence            777777888888875 56999999999999999999999988642                1245567777777777766


Q ss_pred             HHHH
Q 013611          427 AFLY  430 (439)
Q Consensus       427 i~~~  430 (439)
                      +...
T Consensus       369 ~~~~  372 (375)
T TIGR00899       369 CLLL  372 (375)
T ss_pred             HHhe
Confidence            6543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.61  E-value=3.3e-13  Score=135.15  Aligned_cols=85  Identities=11%  Similarity=0.158  Sum_probs=75.2

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG  108 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~  108 (439)
                      ..+.+.+++.|++.|++.|...|...+++.+++++++      |+++++.+..+.++|..+||.+++++.+..+||+.|.
T Consensus        88 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~  161 (382)
T PRK10091         88 SSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFL  161 (382)
T ss_pred             hCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHH
Confidence            3467889999999999999999999999999998866      8899999999999999999999999999899999999


Q ss_pred             HHHHHHHHHHH
Q 013611          109 IPCAFMVAALV  119 (439)
Q Consensus       109 i~~~~~~i~~~  119 (439)
                      +.++..++..+
T Consensus       162 ~~~~~~~~~~~  172 (382)
T PRK10091        162 LIAVFNIAVLA  172 (382)
T ss_pred             HHHHHHHHHHH
Confidence            98876555444

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.61  E-value=1.7e-14  Score=141.61  Aligned_cols=267  Identities=18%  Similarity=0.269  Sum_probs=162.7

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIP  110 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~  110 (439)
                      +.+.+++.|++.|++.+...|...+++.|++|+++      |++++++.+.+.++|.++||.+++++.+.++||+.|++.
T Consensus        84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~  157 (352)
T PF07690_consen   84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS  157 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred             hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence            45589999999999999999999999999999987      999999999999999999999999999889999999999


Q ss_pred             HHHHHHHHHHHHhcCcceeeecCCCCC-CcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          111 CAFMVAALVLFLLGTKTYRFSIKSKQR-NPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      ++..++..++.....+   .+++++++ ++..                      .++.+..++.+               
T Consensus       158 ~~~~~~~~il~~~~~~---~~~~~~~~~~~~~----------------------~~~~~~~~~~~---------------  197 (352)
T PF07690_consen  158 AILSLIAAILFILFLP---EPPPPRERESPKE----------------------SESKKPKPLKP---------------  197 (352)
T ss_dssp             HHHHHHHHHHHHCCC------STTTT--SSTT----------------------TT--HHHCCCH---------------
T ss_pred             cchhhhhhhhHhhhhh---hcccccccccccc----------------------ccccccccccc---------------
Confidence            9887777664322221   11111100 0000                      00000000000               


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCc-cccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611          190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSI-KIPAASLQLFIGIGIITFIPIYDCIFV  268 (439)
Q Consensus       190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~-~~~~~~~~~in~~~iii~~pl~~~~~~  268 (439)
                      ..  +...+.+.++   ............+.......+..   +....+ .. ....+.+..+..+..++..++.+++.+
T Consensus       198 ~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  268 (352)
T PF07690_consen  198 GF--KSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLY---LQEVLG-FSGPSQAGLLFSIFGIVGIIGSLLAGRLSD  268 (352)
T ss_dssp             -C--THHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHH---CCHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc--ccccccchhh---hhhhhhhHHHHHHHHhhcccchh---hhhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00  1122222111   11112222222222222222221   111111 00 122334455555665555666666553


Q ss_pred             hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611          269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV  348 (439)
Q Consensus       269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~  348 (439)
                      ++           +..++..+......++...+.....                   ..+.++.....++.|++.+...+
T Consensus       269 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~  318 (352)
T PF07690_consen  269 RF-----------GRRRRLLIAILLLILGALGLLLLPF-------------------SSSPVWLIIALFLIGFGFGIVFP  318 (352)
T ss_dssp             HT-----------TCHHHHHHHHHHHHHHHHHHCCSHH-------------------HCHHHHHHHHHHHHHHHHHHHCH
T ss_pred             Hc-----------CcHHHHHHHHHHHHHHHHHHHHHHH-------------------hhhHHHHHHHHHHHHHHHHHHHH
Confidence            32           2233444444444444433332221                   12455666678889999999999


Q ss_pred             hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhh
Q 013611          349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSS  382 (439)
Q Consensus       349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~  382 (439)
                      .....+.+.+|++.+|+++|+.+...++|+.+||
T Consensus       319 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  319 ILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.61  E-value=4.4e-13  Score=131.86  Aligned_cols=294  Identities=14%  Similarity=0.120  Sum_probs=186.9

Q ss_pred             CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 013611           27 PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALG  106 (439)
Q Consensus        27 ~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~  106 (439)
                      +...+++.+.++|++.|+..|.+.+...+..++..|+++      |+++.+....+..++-.+|..+|.++.+.+|||..
T Consensus        96 alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~  169 (394)
T COG2814          96 ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT  169 (394)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHH
Confidence            345678899999999999999999999999999999988      99999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCC
Q 013611          107 FGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLE  186 (439)
Q Consensus       107 F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (439)
                      |++.++..++.....+...+  +.+.++.+..++.+                                            
T Consensus       170 F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~--------------------------------------------  203 (394)
T COG2814         170 FLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRT--------------------------------------------  203 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhH--------------------------------------------
Confidence            99888776666655444333  11111110000000                                            


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCcc-ccchhhhhhHHHHHHHHHHhhhh
Q 013611          187 DGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIK-IPAASLQLFIGIGIITFIPIYDC  265 (439)
Q Consensus       187 ~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~-~~~~~~~~in~~~iii~~pl~~~  265 (439)
                            +.++..+.   +.....+.+..+..-.+..+++.....++.   .  |+. -..++.-...++..++...+.++
T Consensus       204 ------~~~~l~~p---~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v---~--g~s~~~vs~~Ll~~Gv~~~~Gn~~gGr  269 (394)
T COG2814         204 ------LLRLLRRP---GVLLGLLATFLFMTGHFALYTYIRPFLESV---A--GFSVSAVSLVLLAFGIAGFIGNLLGGR  269 (394)
T ss_pred             ------HHHHhcCc---hHHHHHHHHHHHHcchhhhHHhHHHHHHHc---c--CCCHhHHHHHHHHHHHHHHHHHHHHhh
Confidence                  00011111   111222222222222222233332222211   1  221 22355666677777776666666


Q ss_pred             hhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 013611          266 IFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVF  345 (439)
Q Consensus       266 ~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l  345 (439)
                      +.+    |        ++++-+...+.+.++.+..+.+..                     .+.+..+...++.+++.. 
T Consensus       270 l~d----r--------~~~~~l~~~~~l~a~~~l~l~~~~---------------------~~~~~~~~~~~~wg~a~~-  315 (394)
T COG2814         270 LAD----R--------GPRRALIAALLLLALALLALTFTG---------------------ASPALALALLFLWGFAFS-  315 (394)
T ss_pred             hcc----c--------cchhHHHHHHHHHHHHHHHHHHhc---------------------chHHHHHHHHHHHHHHhh-
Confidence            543    2        233455566677777776666542                     233434444444333333 


Q ss_pred             HhhhhHHHHHhhcC--hhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHH
Q 013611          346 TIVGLQEFFYDQIP--KELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAG  423 (439)
Q Consensus       346 ~~~~~~~~~~~~aP--~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l  423 (439)
                        +.......+.++  ++.+..+++++....|+|..+|..++|.+.+.                .++....++-+.+.++
T Consensus       316 --~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~----------------~g~~~~~~~~a~l~~~  377 (394)
T COG2814         316 --PALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA----------------LGYAATGWVGAALLLL  377 (394)
T ss_pred             --hhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hchHHHHHHHHHHHHH
Confidence              333344455555  67899999999999999999999999988742                3456677788888888


Q ss_pred             HHHHHHHHhccCccC
Q 013611          424 GLLAFLYFAKSYNRE  438 (439)
Q Consensus       424 ~~~i~~~~~~~~~~~  438 (439)
                      +.++.+...++.+++
T Consensus       378 a~~~~~~~~~~~~~~  392 (394)
T COG2814         378 ALLLALLSARKDRRT  392 (394)
T ss_pred             HHHHHHHHHhccccc
Confidence            887777777766654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.60  E-value=3.3e-13  Score=135.77  Aligned_cols=287  Identities=11%  Similarity=0.042  Sum_probs=166.3

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhhh
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL-NWALGF  107 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~-g~~~~F  107 (439)
                      ..+...+.++|++.|+|.|...+...+.+.+++| ++      |+++++.+..+.++|..+|+.+++++.++. +||..|
T Consensus        94 a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~  166 (393)
T PRK09705         94 YPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTL  166 (393)
T ss_pred             CcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            3456778999999999999999999999999987 55      899999999999999999999999998875 899988


Q ss_pred             HHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCC
Q 013611          108 GIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLED  187 (439)
Q Consensus       108 ~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (439)
                      .+.++..++.+..++...++    +|+++.++..                          .   .               
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--------------------------~---~---------------  198 (393)
T PRK09705        167 AWWALPAVVALFAWWWQSAR----EVASSHKTTT--------------------------T---P---------------  198 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhcC----CCccccCCCc--------------------------C---C---------------
Confidence            76554444443333322111    1111000000                          0   0               


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhh
Q 013611          188 GKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIF  267 (439)
Q Consensus       188 ~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~  267 (439)
                      .+.     ..++ +.+...   +........+....+..+....+  ....   ....+.+..+..+..++..++.+++ 
T Consensus       199 ~~~-----l~~~-~~~~l~---~~~~~~~~~~~~~~~~lp~~l~~--~g~s---~~~ag~~~~~~~i~~i~g~~~~g~l-  263 (393)
T PRK09705        199 VRV-----VFTP-RAWTLG---VYFGLINGGYASLIAWLPAFYIE--IGAS---AQYSGSLLALMTLGQAAGALLMPAM-  263 (393)
T ss_pred             ccc-----ccCH-hHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--cCCC---hhhhhHHHHHHHHHHHHHHHHHHHH-
Confidence            000     0011 111111   11111111222222222222111  1110   1223445555555555555554443 


Q ss_pred             hhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 013611          268 VPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTI  347 (439)
Q Consensus       268 ~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~  347 (439)
                         .+|.       +.++.+.+++.+.++++..+....                     .+..+.  ..++.+++.+...
T Consensus       264 ---~~r~-------~~~~~~~~~~~l~~~~~~~~~~~~---------------------~~~~~~--~~~l~g~g~g~~~  310 (393)
T PRK09705        264 ---ARHQ-------DRRKLLMLALVLQLVGFCGFIWLP---------------------LQLPVL--WAMVCGLGLGGAF  310 (393)
T ss_pred             ---Hhhc-------cchHHHHHHHHHHHHHHHHHHHcc---------------------chHHHH--HHHHHHHhccchH
Confidence               3332       233455666666666655444321                     111111  1234567776666


Q ss_pred             hhhHHHHHhhc-ChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 013611          348 VGLQEFFYDQI-PKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLL  426 (439)
Q Consensus       348 ~~~~~~~~~~a-P~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~  426 (439)
                      +.....+.+.. |++.+|+.+|+.+....+++.+++.+.+.+.+..               +++...|...++.+++..+
T Consensus       311 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~---------------g~~~~~~~~~~~~~~~~~~  375 (393)
T PRK09705        311 PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS---------------GNYLMDWAFHALCVVGLMI  375 (393)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------CCchHHHHHHHHHHHHHHH
Confidence            66655666666 4789999999999999999999999999887532               3345566666666666666


Q ss_pred             HHHHHhc
Q 013611          427 AFLYFAK  433 (439)
Q Consensus       427 i~~~~~~  433 (439)
                      +.+...+
T Consensus       376 ~~~~~~~  382 (393)
T PRK09705        376 ITLRFAP  382 (393)
T ss_pred             HHHHhcc
Confidence            6555544

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.60  E-value=6.1e-13  Score=135.65  Aligned_cols=84  Identities=18%  Similarity=0.220  Sum_probs=74.6

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG  108 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~  108 (439)
                      ..+.+.+++.|++.|++.|...|...+.+.+++|+++      |++++++++.+.++|..+++.+++++.+.+|||+.|.
T Consensus       108 ~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~  181 (434)
T PRK11663        108 SSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMM  181 (434)
T ss_pred             HhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            3467788888999999999999999999999999877      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 013611          109 IPCAFMVAAL  118 (439)
Q Consensus       109 i~~~~~~i~~  118 (439)
                      +.++..++..
T Consensus       182 ~~~i~~~~~~  191 (434)
T PRK11663        182 IAGIIAIVVG  191 (434)
T ss_pred             HHHHHHHHHH
Confidence            8876555443

>PRK10504 putative transporter; Provisional

Probab=99.60  E-value=4.7e-13  Score=137.72  Aligned_cols=308  Identities=12%  Similarity=0.080  Sum_probs=169.3

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.++++|+++|+|.|+..|...+.+.|.+|+++      |.+++++...+.++|..+||.++|++.+..+||+.|.+
T Consensus        96 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~  169 (471)
T PRK10504         96 GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLI  169 (471)
T ss_pred             CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHH
Confidence            356778999999999999999999999999998765      89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCC-------C
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATP-------D  182 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  182 (439)
                      +.+...+..+......++.+.++     .+. +..+..............    .+..+...|.........       .
T Consensus       170 ~~~~~~l~~~~~~~~~~~~~~~~-----~r~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (471)
T PRK10504        170 NIPVGIIGAIATLMLMPNYTMQT-----RRF-DLSGFLLLAVGMATLTLA----LDGSKGLGLSPLAIAGLVAVGVVALL  239 (471)
T ss_pred             HHHHHHHHHHHHHHhCCCccccC-----CCC-ChHHHHHHHHHHHHHHHH----HhcCCcCCcchHHHHHHHHHHHHHHH
Confidence            88766665554443333211111     111 111111100000000000    000000011000000000       0


Q ss_pred             -----CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHH
Q 013611          183 -----VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGII  257 (439)
Q Consensus       183 -----~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~ii  257 (439)
                           +........+. +....|.+.   .........+..+.......+...++   ..| ......+.......+..+
T Consensus       240 ~~~~~~~~~~~~~~~~-~l~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~---~~g-~~~~~~g~~~~~~~~~~~  311 (471)
T PRK10504        240 LYLLHARNNNRALFSL-KLFRTRTFS---LGLAGSFAGRIGSGMLPFMTPVFLQI---GLG-FSPFHAGLMMIPMVLGSM  311 (471)
T ss_pred             HHHHHHhcCCCCccCH-HHhcccchH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HcC-CCHHHHHHHHHHHHHHHH
Confidence                 00000000011 111112221   12222222222222222111111111   111 111222333333333333


Q ss_pred             HHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHH
Q 013611          258 TFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYL  337 (439)
Q Consensus       258 i~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  337 (439)
                      +..++.+++    .+|.       ++++.+..|.++.+++..+......                   ..+.++.....+
T Consensus       312 ~~~~~~~~l----~~r~-------g~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~  361 (471)
T PRK10504        312 GMKRIVVQV----VNRF-------GYRRVLVATTLGLALVSLLFMLVAL-------------------LGWYYLLPFVLF  361 (471)
T ss_pred             HHHHHHHHH----HHHc-------CchHHHHHHHHHHHHHHHHHHhccc-------------------cccHHHHHHHHH
Confidence            333444443    3442       3444556677766666555443310                   112333445567


Q ss_pred             HHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhcc
Q 013611          338 LCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA  391 (439)
Q Consensus       338 l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~  391 (439)
                      +.|++.++..+..+..+.+.+|++.+|+++|++++.+.+|+.+|+.+.+.+.+.
T Consensus       362 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~  415 (471)
T PRK10504        362 LQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL  415 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899988888888999999999999999999999999999999999977544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.60  E-value=1.8e-13  Score=140.44  Aligned_cols=307  Identities=13%  Similarity=0.100  Sum_probs=171.7

Q ss_pred             hHHHHHH-HHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           31 QIIVFIF-SLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        31 ~~~~~~~-~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      +.+.+++ .|++.|+|.|...+...+.+.++++ ++      |+++.++.+.+.++|..++|.+++++.+.+|||+.|++
T Consensus       106 ~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~  178 (455)
T TIGR00892       106 NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLI  178 (455)
T ss_pred             hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHH
Confidence            4555544 4688899999876667788889885 45      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      .++..++..+..++.++....++...+++.              ...  +..  ....+.... ...+        ...+
T Consensus       179 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------------~~~--~~~--~~~~~~~~~-~~~~--------~~~~  231 (455)
T TIGR00892       179 LGGLLLHCCVCGALMRPVGPSQRVSKSKSK--------------EGL--PPD--GSTKKLSKK-STAE--------KINR  231 (455)
T ss_pred             HHHHHHHHHHHHHHhCCCCccccccccccc--------------ccC--CCC--Ccccccccc-chhh--------hhhh
Confidence            987776655544443332111000000000              000  000  000000000 0000        0000


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611          190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP  269 (439)
Q Consensus       190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~  269 (439)
                      ..+. +....+.+   .............+....+.+.....  +....   ....+.+..+..+..++..|+.+.+.++
T Consensus       232 ~~~~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~l~~~~~--~~g~s---~~~~g~~~~~~~~~~~~~~~~~g~l~d~  302 (455)
T TIGR00892       232 FLDF-SLFTHRGF---LVYLSGNVIMFLGFFAPIIFLVPYAK--DKGVD---EYEAAFLLSIIGFVDIFARPSCGLIAGL  302 (455)
T ss_pred             hcch-HHhcCchH---HHHHHHHHHHHHHccchHHHHHHHHH--HcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            0000 00111111   11111122222222222222222221  11111   2234556666677777777777765542


Q ss_pred             hcccccCCCCCCCchhHH--hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 013611          270 ITRYFTQNPSGITMLQRI--GAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTI  347 (439)
Q Consensus       270 ~~~k~~~~~~~~~~~~~i--~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~  347 (439)
                          +.     .+.+++.  ..++++.++++++....                      .+.+++++..++.|++.+...
T Consensus       303 ----~~-----~~~~~~~~~~~~~~~~~l~~ll~~~~----------------------~~~~~~~i~~~~~G~~~g~~~  351 (455)
T TIGR00892       303 ----KW-----IRPHVQYLFSFALLFNGLTHLLCALA----------------------GDYTGLVIYCIFFGLSFGSVG  351 (455)
T ss_pred             ----cc-----cCHHHHHHHHHHHHHHHHHHHHHHHh----------------------chHHHHHHHHHHHHHHhchHH
Confidence                11     1122222  33333333433333221                      245666777888999998888


Q ss_pred             hhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 013611          348 VGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLL  426 (439)
Q Consensus       348 ~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~  426 (439)
                      +...+.+.+.+|++.+|+.+|+++...++|+.+|+.+.|.+.+..               +++...|...+++.+++++
T Consensus       352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~---------------g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT---------------KNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc---------------CCcchHHHHhhHHHHHHHH
Confidence            888889999999999999999999999999999999999876422               2234556666665555544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.60  E-value=3.4e-13  Score=139.61  Aligned_cols=292  Identities=15%  Similarity=0.123  Sum_probs=184.7

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG  108 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~  108 (439)
                      ..+.+.+++.-++.|++.+...|..++++.+..|+++      ..++.++.....|+.-++||.++|.+....|..+.|.
T Consensus       100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~  173 (524)
T PF05977_consen  100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL  173 (524)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            3467788888899999999999999999999999987      8999999999999999999999999999899999999


Q ss_pred             HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611          109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG  188 (439)
Q Consensus       109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (439)
                      ++++..++.+......++...   ++.  .+..++.+-+..+++                                    
T Consensus       174 inalsfl~~i~~l~~~~~~~~---~~~--~~~e~~~~~l~~G~r------------------------------------  212 (524)
T PF05977_consen  174 INALSFLISILALLRWKPPPP---PSS--LPRERFFSALREGLR------------------------------------  212 (524)
T ss_pred             HHHHHHHHHHHHHHHcccccc---ccc--cchhhhhhhHHHHHH------------------------------------
Confidence            999888776655443332211   111  111111111111100                                    


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611          189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV  268 (439)
Q Consensus       189 ~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~  268 (439)
                            -+.+.+.+...+..   ...+.....-....++...+   ..++ +-....|.+....++..++.     -+..
T Consensus       213 ------yv~~~~~l~~~l~~---~~~~~l~~~a~~aLlPl~a~---~~l~-~~a~~yGll~a~~gvGai~G-----al~~  274 (524)
T PF05977_consen  213 ------YVRSSPPLRSVLLR---SFLFNLFASAVWALLPLFAR---DVLG-GGASGYGLLLAAFGVGAILG-----ALLL  274 (524)
T ss_pred             ------HHhcchHHHHHHHH---HHHHHHhhhHHHHhhhHHHH---HHhC-CcHHHHHHHHHHHHHHHHHH-----HHHH
Confidence                  01111111111111   11111111111111222221   1111 11222344444455554443     3333


Q ss_pred             hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611          269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV  348 (439)
Q Consensus       269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~  348 (439)
                      +..+++      .+..+.+..+.++.+++++.+++.                      .+.|..++..++.|++.....+
T Consensus       275 ~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~----------------------~~~~~~~~~l~l~G~~~~~~~~  326 (524)
T PF05977_consen  275 PRLRRR------LSSRRLVLLASLLFALALLLLALS----------------------PSFWLALIALFLAGAAWIIANS  326 (524)
T ss_pred             HHhhcc------cCcchhhHHHHHHHHHHHHHHhcc----------------------hHHHHHHHHHHHHHHHHHHHHH
Confidence            333332      244456677777777777666654                      2566677788889999999999


Q ss_pred             hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 013611          349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAF  428 (439)
Q Consensus       349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~  428 (439)
                      ..+..+++.+|++++|++++++......+..+|..+.|.+.+..                +....+...++..+++.++.
T Consensus       327 ~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~----------------g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  327 SLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF----------------GVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------CHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887532                23445555555555555554


Q ss_pred             H
Q 013611          429 L  429 (439)
Q Consensus       429 ~  429 (439)
                      .
T Consensus       391 ~  391 (524)
T PF05977_consen  391 L  391 (524)
T ss_pred             H
Confidence            4

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.59  E-value=4.3e-13  Score=134.96  Aligned_cols=262  Identities=15%  Similarity=0.106  Sum_probs=152.0

Q ss_pred             HHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHH
Q 013611           36 IFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMV  115 (439)
Q Consensus        36 ~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~  115 (439)
                      .+.|+++|++.|+..|...+++.|.+|+++      |.++.++.....++|.++||.++|++.+. .|+..|.+.+...+
T Consensus        92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~  164 (393)
T PRK11195         92 LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL  164 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            678999999999999999999999999877      99999999999999999999999999885 48877777765544


Q ss_pred             HHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCCCCchhh
Q 013611          116 AALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLED  195 (439)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (439)
                      ++....... ++.+.++++.+.++. ...+                         ++.+..                 ..
T Consensus       165 ~~~~~~~~l-~~~~~~~~~~~~~~~-~~~~-------------------------~~~~~~-----------------~~  200 (393)
T PRK11195        165 LAALFNLFI-PRLGARRPGQSWNPI-ALLR-------------------------DFFHAC-----------------RV  200 (393)
T ss_pred             HHHHHHhcC-CCCcccccccCCCHH-HHHH-------------------------HHHHHH-----------------HH
Confidence            443333221 211111110000000 0000                         000000                 00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhhccccc
Q 013611          196 VEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFT  275 (439)
Q Consensus       196 v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~  275 (439)
                      +...+.. +.  .......++.........+....+   ..++ ......+.+....++..++..++.+++.    +|+ 
T Consensus       201 l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~lg-~s~~~~G~~~~~~~~g~i~g~~~~~~l~----~~~-  268 (393)
T PRK11195        201 LWRDKLG-RF--SLAGTTLFWGAGATLRFLVLAWAP---VALG-ITLNQPAYLQAVVAIGIAVGAGAAARLV----TLE-  268 (393)
T ss_pred             HHhCchh-HH--HHHHHHHHHHHHHHHHHHHHHHHH---HHcC-CChhHHHHHHHHHHHHHHHHHHHHHHHh----cCC-
Confidence            1111111 11  111111222222222211111110   0111 1122345556666666666555554432    221 


Q ss_pred             CCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013611          276 QNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFY  355 (439)
Q Consensus       276 ~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~  355 (439)
                            +..+.+..|. +.++........                      .+.++.++..++.|++.++..++.++.++
T Consensus       269 ------~~~~~~~~g~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q  319 (393)
T PRK11195        269 ------TVLRVLPAGI-LMGLVVLLMALQ----------------------HSLLPAYPLLILIGALGGFFVVPMNALLQ  319 (393)
T ss_pred             ------cccchHHHHH-HHHHHHHHHHHH----------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence                  2233445554 333333322221                      24555667777889999998888888888


Q ss_pred             hhcChhh-HHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          356 DQIPKEL-KSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       356 ~~aP~~~-~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      +..|++. +|+++|+.++.+++|..++..+.+.+.
T Consensus       320 ~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        320 HRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             hhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            8777765 799999999999999999999988664

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.59  E-value=2.1e-13  Score=139.16  Aligned_cols=89  Identities=12%  Similarity=0.240  Sum_probs=76.2

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHH---HHhhhcccchh
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVV---IYIQDNLNWAL  105 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~---g~l~~~~g~~~  105 (439)
                      ..+.+.++++|++.|+|.|...+...++++|++|+++      |++++++++.+.++|.++|+.++   +...+..+||+
T Consensus       124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~  197 (481)
T TIGR00879       124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRI  197 (481)
T ss_pred             ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHH
Confidence            3445689999999999999999999999999999887      99999999999999999999999   77777889999


Q ss_pred             hhHHHHHHHHHHHHHHHh
Q 013611          106 GFGIPCAFMVAALVLFLL  123 (439)
Q Consensus       106 ~F~i~~~~~~i~~~l~~~  123 (439)
                      .|++.++..++.+...++
T Consensus       198 ~f~~~~~~~~~~~~~~~~  215 (481)
T TIGR00879       198 PLGLQLIPAGLLFLGLFF  215 (481)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999976655555444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.59  E-value=8.3e-13  Score=131.60  Aligned_cols=268  Identities=14%  Similarity=0.072  Sum_probs=156.7

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+++.|++.|++.+...|...+++.|.+|+++      |++++++.+...++|..+|+.+++++.+..+||+.|++
T Consensus        91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~  164 (385)
T TIGR00710        91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF  164 (385)
T ss_pred             ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            457788999999999999999999999999999876      99999999999999999999999999998999999998


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      .++..++..+..++..++.   +++++++....                            .+ +..             
T Consensus       165 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----------------------------~~-~~~-------------  199 (385)
T TIGR00710       165 LSLAGILLSALIFFILPET---LPYEARIQIST----------------------------YF-ETF-------------  199 (385)
T ss_pred             HHHHHHHHHHHHHHhCCCC---CCCcccCCHHH----------------------------HH-HHH-------------
Confidence            8776666555443322211   11110000000                            00 000             


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611          190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP  269 (439)
Q Consensus       190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~  269 (439)
                          .+..+.++.....   +.....+..+.......+....+ +.+.+   ....+.+.....+..++..++.+++.++
T Consensus       200 ----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~g~~---~~~~g~~~~~~~~~~~~~~~~~g~l~~~  268 (385)
T TIGR00710       200 ----LLLLKSKMFWGYA---LIYGASFGGFFAFFSGAPFVYID-IMGVS---PSVFGLLFALNIIAMIFGGFLNGRFIKK  268 (385)
T ss_pred             ----HHHHcCchhHHHH---HHHHHHHHHHHHHHHcChHHHHH-HcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                0000111111111   11111111111111111111100 11110   1223445555566666666666665432


Q ss_pred             hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611          270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG  349 (439)
Q Consensus       270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~  349 (439)
                      +           +.++.+.++..+.+++..++......                 ...+.+..+....+.++|.....+.
T Consensus       269 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~  320 (385)
T TIGR00710       269 W-----------GAKSLLRMGLILFAVSAVLLEITAIL-----------------GLGSWAMIIGPMMFVGIGNSMISSI  320 (385)
T ss_pred             c-----------CHHHHHHHHHHHHHHHHHHHHHHHHh-----------------ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            2           33445566776666666555543210                 0012334455567788888888777


Q ss_pred             hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611          350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSII  388 (439)
Q Consensus       350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~  388 (439)
                      ....+.+..| +.+|+++++.+.....++.+.+.+.+..
T Consensus       321 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~  358 (385)
T TIGR00710       321 AMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI  358 (385)
T ss_pred             HHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7777777776 6799999999888766555555555543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.58  E-value=1.2e-12  Score=130.32  Aligned_cols=86  Identities=13%  Similarity=0.155  Sum_probs=76.1

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+.+.+++.|++.+...+...+++.|.+|+++      |++++++.+.+.++|..+||.+++++.+..+|++.|++
T Consensus        77 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  150 (377)
T PRK11102         77 QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWV  150 (377)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            356778899999999999999999999999999876      99999999999999999999999999998999999998


Q ss_pred             HHHHHHHHHHHH
Q 013611          110 PCAFMVAALVLF  121 (439)
Q Consensus       110 ~~~~~~i~~~l~  121 (439)
                      .++..++..+..
T Consensus       151 ~~~~~~~~~~~~  162 (377)
T PRK11102        151 LALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHH
Confidence            876666655443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.58  E-value=5.1e-13  Score=132.12  Aligned_cols=288  Identities=9%  Similarity=0.023  Sum_probs=166.0

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG  108 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~  108 (439)
                      ..+.+.+++.|.+.|+|.|...+.......+++| ++      |+++.+++..+.++|.++++.+.+.+.+..+||+.|+
T Consensus        88 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~  160 (377)
T TIGR00890        88 ADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFI  160 (377)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHH
Confidence            3477889999999999999988888888888886 34      8999999999999999887777777777789999999


Q ss_pred             HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611          109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG  188 (439)
Q Consensus       109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (439)
                      +.++..++..+..++..+.    +|+++.++..+                     .+ .+..++                
T Consensus       161 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------------------~~-~~~~~~----------------  198 (377)
T TIGR00890       161 YMGIIFLLVIVLGAFLIGY----PPGQLIKTNIE---------------------VS-VKDYTV----------------  198 (377)
T ss_pred             HHHHHHHHHHHHHHHheec----CchhccccCcc---------------------cc-hhhhhH----------------
Confidence            9887666655443322211    11100000000                     00 000000                


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611          189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV  268 (439)
Q Consensus       189 ~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~  268 (439)
                           .+....+....   +.+........+......+....+  +....   .-..+.+..+..+..++..++.+++.+
T Consensus       199 -----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d  265 (377)
T TIGR00890       199 -----WEMLRTPQFWV---LYLSFFLNAVSGLLLIGLYKPYGQ--SLGLS---DGFLVLAVSISSIFNGGGRPFLGALSD  265 (377)
T ss_pred             -----HHHHcCccHHH---HHHHHHHHhHHHHHHHHHHHHHHH--HcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 00001111111   111111111111111111111111  11111   112344556666666666677777655


Q ss_pred             hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611          269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV  348 (439)
Q Consensus       269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~  348 (439)
                      ++.+           ++.+.++.++.++++.......                    ..+.+......++.+++.+...+
T Consensus       266 r~g~-----------~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~g~~~~  314 (377)
T TIGR00890       266 KIGR-----------QKTMSIVFGISAVGMAAMLFIP--------------------MLNDVLFLATVALVFFTWGGTIS  314 (377)
T ss_pred             HHhh-----------hhhhhHHHHHHHHHHHHHHHcc--------------------cchhHHHHHHHHHHHHHhccchh
Confidence            4332           2345566666666665544331                    01222233334555666655555


Q ss_pred             hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 013611          349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGL  425 (439)
Q Consensus       349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~  425 (439)
                      .....+.+..|++.||+++|+.+....+|+.+++.+.+.+.+.                .++...|...+++++++.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~----------------~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE----------------IGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh----------------hchhhHHHHHHHHHHHhc
Confidence            5556788899999999999999999999999999999988642                123556766666666653

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.57  E-value=1.2e-12  Score=134.72  Aligned_cols=86  Identities=13%  Similarity=0.174  Sum_probs=73.9

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc---cchh
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL---NWAL  105 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~---g~~~  105 (439)
                      ..+...+++.|++.|+++|...|...+++++++|+++      |+++++++..+.++|.++|+.+..++.+..   +|+.
T Consensus       119 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~  192 (467)
T PRK09556        119 SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIG  192 (467)
T ss_pred             cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchh
Confidence            3578889999999999999999999999999999988      999999999999999999999988876643   6999


Q ss_pred             hhHHHHHHHHHHHHH
Q 013611          106 GFGIPCAFMVAALVL  120 (439)
Q Consensus       106 ~F~i~~~~~~i~~~l  120 (439)
                      .|.+.++..++..++
T Consensus       193 ~f~~~g~~~~~~~i~  207 (467)
T PRK09556        193 MFIFPSIIALIIGFI  207 (467)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            898877665544433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.56  E-value=3e-12  Score=130.46  Aligned_cols=81  Identities=16%  Similarity=0.329  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh--------ccc
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD--------NLN  102 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~--------~~g  102 (439)
                      +...+++.|+++|+|.|+..|...+++.+++|+++      |+++.+..+.+.++|.++++.+++.+..        .+|
T Consensus       123 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g  196 (432)
T PRK10406        123 APALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG  196 (432)
T ss_pred             HHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence            34578999999999999999999999999999987      9999999999999999999988766542        579


Q ss_pred             chhhhHHHHHHHHHH
Q 013611          103 WALGFGIPCAFMVAA  117 (439)
Q Consensus       103 ~~~~F~i~~~~~~i~  117 (439)
                      ||+.|++.++..++.
T Consensus       197 Wr~~F~i~~~~~ll~  211 (432)
T PRK10406        197 WRIPFALGAVLAVVA  211 (432)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999877654443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.55  E-value=1.9e-12  Score=133.41  Aligned_cols=86  Identities=19%  Similarity=0.237  Sum_probs=73.4

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh--------hcc
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ--------DNL  101 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~--------~~~  101 (439)
                      .....++++|++.|++.|...|...++++|++|+++      |++++++...+..+|.++++.+++.+.        +.+
T Consensus       118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~  191 (479)
T PRK10077        118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD  191 (479)
T ss_pred             hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence            346778999999999999999999999999999987      999999999999999999998877653        357


Q ss_pred             cchhhhHHHHHHHHHHHHHH
Q 013611          102 NWALGFGIPCAFMVAALVLF  121 (439)
Q Consensus       102 g~~~~F~i~~~~~~i~~~l~  121 (439)
                      +||+.|++.++..++..+..
T Consensus       192 gWr~~f~~~~~~~~~~~~~~  211 (479)
T PRK10077        192 GWRYMFASEAIPALLFLMLL  211 (479)
T ss_pred             ChHHHHHHHHHHHHHHHHHH
Confidence            99999998876666654443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.55  E-value=3.3e-12  Score=128.44  Aligned_cols=285  Identities=12%  Similarity=0.068  Sum_probs=152.3

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhh--hhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS--SFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG  108 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~--~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~  108 (439)
                      +.+.+++.+.+.+...+...|...++..|+.++++      |+  ...++...+.++|.++||.+++++.+++|||..|+
T Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~  177 (393)
T PRK15011        104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYL  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHH
Confidence            44444444444444445678888888888776554      43  34578899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611          109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG  188 (439)
Q Consensus       109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (439)
                      +.++..++..+..+...++.+.++++.  +                            .+    .+              
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------------------~~----~~--------------  209 (393)
T PRK15011        178 SAAVAFIVCGVMVWLFLPSMRKELPLA--T----------------------------GT----LE--------------  209 (393)
T ss_pred             HHHHHHHHHHHHHHhhcCccCCCCccc--c----------------------------cc----cc--------------
Confidence            888766655544333222111110000  0                            00    00              


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611          189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV  268 (439)
Q Consensus       189 ~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~  268 (439)
                       ..    .++++.....   +......+..+.+.....+...+   ...+ -.....+.+..+.....++..++.+++.+
T Consensus       210 -~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~l~---~~~~-~~~~~~g~~~~~~~~~~i~~~~~~G~l~d  277 (393)
T PRK15011        210 -AP----RRNRRDTLLL---FVICTLMWGTNSLYIINMPLFII---NELH-LPEKLAGVMMGTAAGLEIPTMLIAGYFAK  277 (393)
T ss_pred             -cc----ccccccHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00    0001111111   11112222222222222221111   0111 00112233334444444444555666554


Q ss_pred             hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611          269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV  348 (439)
Q Consensus       269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~  348 (439)
                      ++.+|           +.+..+.+...+.+......                      .+.++.+...++.+++.+...+
T Consensus       278 r~g~~-----------~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~l~~~~l~~~~~g~~~~  324 (393)
T PRK15011        278 RLGKR-----------FLMRVAAVAGVCFYAGMLMA----------------------HSPAILLGLQLLNAIYIGILGG  324 (393)
T ss_pred             HhChH-----------HHHHHHHHHHHHHHHHHHHH----------------------hhHHHHHHHHHHHHHHHHHHHH
Confidence            33222           23444444444333222211                      1234444555666666666555


Q ss_pred             hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 013611          349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAF  428 (439)
Q Consensus       349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~  428 (439)
                      .......+..|+ .+|+++++++...++|+.+|+.+++.+.+.                .++...|...+++++++.+++
T Consensus       325 ~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~----------------~g~~~~~~~~~~~~~~~~~~~  387 (393)
T PRK15011        325 IGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI----------------WNYHAVFWFALVMIIATLFCL  387 (393)
T ss_pred             HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhhHHHHHHHHHHHHHHHHHH
Confidence            555666677776 599999999999999999999999988642                123556666666666666655


Q ss_pred             HHH
Q 013611          429 LYF  431 (439)
Q Consensus       429 ~~~  431 (439)
                      +..
T Consensus       388 ~~~  390 (393)
T PRK15011        388 LRI  390 (393)
T ss_pred             Hhh
Confidence            543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.55  E-value=5.2e-12  Score=130.85  Aligned_cols=299  Identities=13%  Similarity=0.124  Sum_probs=172.8

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-cccchhhh
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD-NLNWALGF  107 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~-~~g~~~~F  107 (439)
                      ..+.+.+.+.+++.+++.+...+...++..|++|+++      |+++.++...+.++|.++|+.+++++.+ ..|||..|
T Consensus       104 ~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f  177 (491)
T PRK11010        104 GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMY  177 (491)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence            4567788889999999999999999999999999877      9999999999999999999999999998 57999999


Q ss_pred             HHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCC
Q 013611          108 GIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLED  187 (439)
Q Consensus       108 ~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (439)
                      ++.++..++..+..++.++. .+.++++  +...+                            ...+.            
T Consensus       178 ~i~a~l~ll~~l~~~~~~e~-~~~~~~~--~~~~~----------------------------~~~~~------------  214 (491)
T PRK11010        178 WLMAALLIPCIIATLLAPEP-TDTIPVP--KTLEQ----------------------------AVVAP------------  214 (491)
T ss_pred             HHHHHHHHHHHHHHHhcCCC-ccccccc--cchhh----------------------------hHHHH------------
Confidence            99887766665544332211 1000000  00000                            00000            


Q ss_pred             CCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhh-hhHHHHHHHHHHhhhh
Q 013611          188 GKLCTLEDVEEAKALLRLIPI-WATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQ-LFIGIGIITFIPIYDC  265 (439)
Q Consensus       188 ~~~~~~~~v~~~k~~~~~l~~-~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~-~in~~~iii~~pl~~~  265 (439)
                           ..+...+++......+ +.........+. +...+..+.    .+..   .-..+.+. .+..+..++..++.++
T Consensus       215 -----l~~~~~~~~~~~~ll~~~l~~~~~~~~~~-~~~~~l~~~----~G~s---~~~~g~~~~~~g~i~~iiG~ll~G~  281 (491)
T PRK11010        215 -----LRDFFGRNNAWLILLLIVLYKLGDAFAMS-LTTTFLIRG----VGFD---AGEVGLVNKTLGLLATIVGALYGGI  281 (491)
T ss_pred             -----HHHHHcCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh----cCCC---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 0000001111111111 111111111111 111121111    1110   11122232 2333444555555555


Q ss_pred             hhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 013611          266 IFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVF  345 (439)
Q Consensus       266 ~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l  345 (439)
                      +.+++.+           ++.+.++.++.+++.........                  ...+.+.+....++..+..++
T Consensus       282 L~dr~g~-----------~~~l~i~~~l~~l~~l~~~~l~~------------------~~~~~~~l~~~~~l~~~~~g~  332 (491)
T PRK11010        282 LMQRLSL-----------FRALMIFGILQGVSNAGYWLLSI------------------TDKNLYSMGAAVFFENLCGGM  332 (491)
T ss_pred             HHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHh------------------ccccHHHHHHHHHHHHHHHHH
Confidence            5443322           23344444444444332222110                  011344444455665666666


Q ss_pred             HhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 013611          346 TIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGL  425 (439)
Q Consensus       346 ~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~  425 (439)
                      ..+.......+.+|++.+++.+|+.+...++|..+++.+.|.+.+.                .++...|.+.+++++++.
T Consensus       333 ~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~----------------~G~~~~f~~~~~~~l~~l  396 (491)
T PRK11010        333 GTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA----------------HGWPTFYLFSVAAAVPGL  396 (491)
T ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hChHHHHHHHHHHHHHHH
Confidence            6666778888999999999999999999999999888888888642                134667877888888887


Q ss_pred             HHHHHHhcc
Q 013611          426 LAFLYFAKS  434 (439)
Q Consensus       426 ~i~~~~~~~  434 (439)
                      ++.....++
T Consensus       397 ~~~~~~~~~  405 (491)
T PRK11010        397 LLLLVCRQT  405 (491)
T ss_pred             HHHHHHHhc
Confidence            777666443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.54  E-value=6.7e-12  Score=128.66  Aligned_cols=83  Identities=14%  Similarity=0.218  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHH-HHHHHHHHHhhhcccchhhhHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGA-NSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~-~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      +...+++.|++.|++.|...|...+...+++|+++      |++++++++.+.++|. +++|+++..+....+||+.|++
T Consensus       119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i  192 (452)
T PRK11273        119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM  192 (452)
T ss_pred             cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence            56778888999999999999998899999999877      9999999999999996 5667665444444599999999


Q ss_pred             HHHHHHHHHH
Q 013611          110 PCAFMVAALV  119 (439)
Q Consensus       110 ~~~~~~i~~~  119 (439)
                      .++..++..+
T Consensus       193 ~~~~~~~~~~  202 (452)
T PRK11273        193 PAFAAILVAL  202 (452)
T ss_pred             HHHHHHHHHH
Confidence            8766555443

>TIGR00895 2A0115 benzoate transport

Probab=99.54  E-value=2.5e-12  Score=128.33  Aligned_cols=293  Identities=14%  Similarity=0.118  Sum_probs=159.1

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+++.+++.|++.|...|...+++.|.+|+++      |++++++...+.++|..+|+.+++++.+..+|++.|.+
T Consensus       103 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~  176 (398)
T TIGR00895       103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV  176 (398)
T ss_pred             cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence            356778899999999999999999999999999876      99999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      .++...+...+.+...++......+++++...   +........  .        ...+     ++....    .+....
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~--------~~~~-----~~~~~~----~~~~~~  234 (398)
T TIGR00895       177 GGIAPLLLLLLLMRFLPESIDFLVSKRPETVR---RIVNAIAPQ--M--------QAEA-----QSALPE----QKATQG  234 (398)
T ss_pred             hhhHHHHHHHHHHHhCCCCChHHHhcCHHHHH---HHHHHHHHh--c--------cccc-----cccccc----cccccc
Confidence            86444443333322222111000000000000   000000000  0        0000     000000    000000


Q ss_pred             CCch--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhh
Q 013611          190 LCTL--EDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIF  267 (439)
Q Consensus       190 ~~~~--~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~  267 (439)
                      ..++  +...+.+...+...++.........+.......+....    +.+ ......+.+..+..+..++..++.+++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l~  309 (398)
T TIGR00895       235 TKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMV----ELG-FSLSLAATGGALFNFGGVIGSIIFGWLA  309 (398)
T ss_pred             hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000  00001111111111111111111111111111221111    111 0011223444445555555555555544


Q ss_pred             hhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 013611          268 VPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTI  347 (439)
Q Consensus       268 ~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~  347 (439)
                          +|.       +.+ ++.++..+.++.........                     .+.+...+..++.+++.+...
T Consensus       310 ----~~~-------~~~-~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~  356 (398)
T TIGR00895       310 ----DRL-------GPR-VTALLLLLGAVFAVLVGSTL---------------------FSPTLLLLLGAIAGFFVNGGQ  356 (398)
T ss_pred             ----hhc-------chH-HHHHHHHHHHHHHHHHHHHh---------------------hCHHHHHHHHHHHHHHHHHHH
Confidence                332       222 34444444443333322211                     134445666788899998888


Q ss_pred             hhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611          348 VGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSII  388 (439)
Q Consensus       348 ~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~  388 (439)
                      +.....+.+..|++.||+++|+.+....+|..+|+.+.|.+
T Consensus       357 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       357 SGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            88889999999999999999999999999999999988854

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.54  E-value=2.7e-12  Score=130.21  Aligned_cols=79  Identities=15%  Similarity=0.320  Sum_probs=72.3

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG  108 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~  108 (439)
                      ..+.+.++++|++.|+|.|...|...+++.|.+|+++      |+++.+++..+.++|.++++.+++++.+.++||+.|+
T Consensus       103 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~  176 (426)
T PRK12307        103 ASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFF  176 (426)
T ss_pred             HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHH
Confidence            3467889999999999999999999999999999877      9999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 013611          109 IPCAF  113 (439)
Q Consensus       109 i~~~~  113 (439)
                      +..+.
T Consensus       177 i~~~~  181 (426)
T PRK12307        177 VGLLP  181 (426)
T ss_pred             HHHHH
Confidence            86543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.53  E-value=6.8e-12  Score=125.59  Aligned_cols=256  Identities=10%  Similarity=0.027  Sum_probs=144.6

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG  108 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~  108 (439)
                      ..+.+.+.+.|++.|++.|...|...+...+..++++      |++++++++.+.++|..+||.+++++.+...+.. ++
T Consensus        91 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~-~~  163 (381)
T PRK03633         91 MVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVL-PW  163 (381)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccccccchH-HH
Confidence            3467888999999999999999998888888888766      9999999999999999999999999987543333 22


Q ss_pred             HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611          109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG  188 (439)
Q Consensus       109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (439)
                      .........+.+ ++.+.    ++++.++++..                             ++                
T Consensus       164 ~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~-----------------------------~~----------------  193 (381)
T PRK03633        164 VTGLVLAAILPL-LFTRI----LNQQAENHDST-----------------------------SI----------------  193 (381)
T ss_pred             HHHHHHHHHHHH-HHhcc----cCCCCCCCCCC-----------------------------CH----------------
Confidence            222211111111 11111    11111000000                             00                


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611          189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV  268 (439)
Q Consensus       189 ~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~  268 (439)
                           .+....+....   ...........+....+..+...++.  ..  + ....+.+..+..+..++...+.+++  
T Consensus       194 -----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lp~~~~~~--g~--s-~~~~g~~~~~~~~~~~~~~~~~g~l--  258 (381)
T PRK03633        194 -----WPMLKLRQARL---GVNGCIISGIVLGSLYGLMPLYLNHQ--GM--S-DASIGFWMALLVSAGILGQWPIGRL--  258 (381)
T ss_pred             -----HHHHHhcchHH---HHHHHHHHHHHHHHHHHHHHHHHHHc--CC--C-HHHHHHHHHHHHHHHHHHHhhhHHH--
Confidence                 00111111111   11111111112222222222211111  11  1 1112334444445555544444444  


Q ss_pred             hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611          269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV  348 (439)
Q Consensus       269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~  348 (439)
                        .+|+       +.++.+.++..+.+++..... .                        .+.......+.++++....|
T Consensus       259 --~dr~-------~~~~~l~~~~~~~~~~~~~~~-~------------------------~~~~~~~~~l~g~~~~~~~p  304 (381)
T PRK03633        259 --ADRF-------GRLLVLRVQVFVVILGSIAML-S------------------------QAAMAPALFILGAAGFTLYP  304 (381)
T ss_pred             --HHHc-------CcHHHHHHHHHHHHHHHHHHh-h------------------------hHHHHHHHHHHHHHHHhHHH
Confidence              3442       333455566666665543322 1                        11122345666777777778


Q ss_pred             hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                      .....+.+.+|++.++.+.+.+++..++|+.+||.+.|.+.+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~  346 (381)
T PRK03633        305 VAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ  346 (381)
T ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999999999999999999999998864

>TIGR00901 2A0125 AmpG-related permease

Probab=99.52  E-value=3.9e-12  Score=125.96  Aligned_cols=263  Identities=10%  Similarity=0.078  Sum_probs=153.3

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-------
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN-------  102 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g-------  102 (439)
                      .+.+.+....++.+++.+...|...+++.|++|+++      |+++.++...+.++|.++|+.+++++....+       
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~  154 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLIT  154 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence            455566666677889999999999999999998877      9999999999999999999999999988888       


Q ss_pred             -chhhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCC
Q 013611          103 -WALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATP  181 (439)
Q Consensus       103 -~~~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (439)
                       ||..|++.++..++...+.++..++..++++++  +   +                         +..+..+.      
T Consensus       155 ~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~--~---~-------------------------~~~~~~~~------  198 (356)
T TIGR00901       155 LWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP--K---P-------------------------LTQAVLKP------  198 (356)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc--h---h-------------------------HHHHHHHH------
Confidence             999999988777765554443222211100000  0   0                         00000000      


Q ss_pred             CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchh---hhhhHH-HHHH
Q 013611          182 DVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAAS---LQLFIG-IGII  257 (439)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~---~~~in~-~~ii  257 (439)
                                 ..+..+.+...+...+.+....+...+.+..+.++....+    .|    .+++.   +..+.. +..+
T Consensus       199 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g----~~~~~~g~~~~~~~~~~~~  259 (356)
T TIGR00901       199 -----------IREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD----MG----FSKEEIALVAKINGLLGAI  259 (356)
T ss_pred             -----------HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cC----CCHHHHHHHhHHHHHHHHH
Confidence                       0001111110112222222222333333333333332221    11    22222   333333 2233


Q ss_pred             HHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHH
Q 013611          258 TFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYL  337 (439)
Q Consensus       258 i~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  337 (439)
                      +..++.+++.    +|       .++++.+.++.++.+++..+..+....        .  +..+ ....+.+.++...+
T Consensus       260 ~g~~~~g~l~----~r-------~g~~~~l~~~~~~~~~~~~~~~~~~~~--------~--~~~~-~~~~~~~~~~~~~~  317 (356)
T TIGR00901       260 LGGLIGGIIM----QP-------LNILYALLLFGIVQALTNAGFVWLASN--------G--HHDG-ITFPHLLMLFLTIT  317 (356)
T ss_pred             HHHHHHHHHH----hh-------hhHHHHHHHHHHHHHHHHHHHHHHHhc--------C--cccc-cccchHHHHHHHHH
Confidence            4444444433    33       234455677777776665554443110        0  0000 00123455677778


Q ss_pred             HHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhh
Q 013611          338 LCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLG  375 (439)
Q Consensus       338 l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~  375 (439)
                      +.++++++..+....+..+.+|+++||+++|+.+...+
T Consensus       318 l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       318 LEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            88999999999999999999999999999999887665

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.52  E-value=2.4e-12  Score=128.13  Aligned_cols=81  Identities=14%  Similarity=0.274  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh--------hcccch
Q 013611           33 IVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ--------DNLNWA  104 (439)
Q Consensus        33 ~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~--------~~~g~~  104 (439)
                      ..+++.|++.|+|.|...|...+++.|.+++++      |+++.++...+.++|.++++.+++.+.        +.++||
T Consensus        97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~  170 (394)
T TIGR00883        97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR  170 (394)
T ss_pred             HHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence            468899999999999999999999999999887      999999999999999999999887764        357999


Q ss_pred             hhhHHHHHHHHHHHH
Q 013611          105 LGFGIPCAFMVAALV  119 (439)
Q Consensus       105 ~~F~i~~~~~~i~~~  119 (439)
                      +.|.+.++..++...
T Consensus       171 ~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       171 IPFLVSAVLVLIGLY  185 (394)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999987765555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.52  E-value=3.3e-12  Score=127.97  Aligned_cols=83  Identities=18%  Similarity=0.227  Sum_probs=73.2

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc--chhhh
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN--WALGF  107 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g--~~~~F  107 (439)
                      .+.+.+++.|++.|+|.|+..|...+++.|++|+++      |+++++++..+.++|..+|+.+++.+.+..+  ||+.|
T Consensus        98 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f  171 (405)
T TIGR00891        98 PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALF  171 (405)
T ss_pred             ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH
Confidence            467788999999999999999999999999999877      9999999999999999999999999988766  99999


Q ss_pred             HHHHHHHHHHH
Q 013611          108 GIPCAFMVAAL  118 (439)
Q Consensus       108 ~i~~~~~~i~~  118 (439)
                      .+.++..++.+
T Consensus       172 ~~~~~~~~~~~  182 (405)
T TIGR00891       172 FISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHHH
Confidence            88765444443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.52  E-value=7.2e-12  Score=127.92  Aligned_cols=84  Identities=14%  Similarity=0.239  Sum_probs=71.6

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH-hhhcccchhhhHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIY-IQDNLNWALGFGI  109 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~-l~~~~g~~~~F~i  109 (439)
                      +...+++.|++.|++.|...|...+.+.+++|+++      |++++++++.+.++|..+++.+.+. +.+..+||+.|++
T Consensus       117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~  190 (438)
T TIGR00712       117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF  190 (438)
T ss_pred             hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence            45677888999999999999999999999999988      9999999999999999999888776 4445799999999


Q ss_pred             HHHHHHHHHHH
Q 013611          110 PCAFMVAALVL  120 (439)
Q Consensus       110 ~~~~~~i~~~l  120 (439)
                      .++..++..++
T Consensus       191 ~~~~~~i~~~~  201 (438)
T TIGR00712       191 PAICAIIVALF  201 (438)
T ss_pred             HHHHHHHHHHH
Confidence            88776665443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.51  E-value=5.1e-12  Score=128.08  Aligned_cols=87  Identities=9%  Similarity=0.041  Sum_probs=76.2

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG  108 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~  108 (439)
                      ..+...+.++|+++|++.+...+...+.+.|.+++++      |.++++++..+.++|+.+||.+++++.+..|||+.|+
T Consensus       101 a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~  174 (413)
T PRK15403        101 TTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFA  174 (413)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            3467889999999999999877788888999999877      8999999999999999999999999998899999999


Q ss_pred             HHHHHHHHHHHHH
Q 013611          109 IPCAFMVAALVLF  121 (439)
Q Consensus       109 i~~~~~~i~~~l~  121 (439)
                      +.++..++..+..
T Consensus       175 ~~~~~~~i~~~~~  187 (413)
T PRK15403        175 IIAVMGLIAFVGL  187 (413)
T ss_pred             HHHHHHHHHHHHH
Confidence            9887766665543

>PRK09952 shikimate transporter; Provisional

Probab=99.51  E-value=2.8e-11  Score=123.64  Aligned_cols=77  Identities=12%  Similarity=0.173  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh--------hcccch
Q 013611           33 IVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ--------DNLNWA  104 (439)
Q Consensus        33 ~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~--------~~~g~~  104 (439)
                      ..+.+.|+++|+|.|+..|...+++.+++|+++      |+++.+....+..+|.+++..+..++.        +.+|||
T Consensus       126 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr  199 (438)
T PRK09952        126 VLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWR  199 (438)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChH
Confidence            368889999999999999999999999999987      999999999999999999988877765        257999


Q ss_pred             hhhHHHHHHHH
Q 013611          105 LGFGIPCAFMV  115 (439)
Q Consensus       105 ~~F~i~~~~~~  115 (439)
                      +.|++.++..+
T Consensus       200 ~~f~~~~~~~l  210 (438)
T PRK09952        200 IPFLFSIVLVL  210 (438)
T ss_pred             HHHHHHHHHHH
Confidence            99998875443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.51  E-value=5.6e-12  Score=143.60  Aligned_cols=272  Identities=10%  Similarity=-0.001  Sum_probs=156.3

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc--------c
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN--------L  101 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~--------~  101 (439)
                      .+.+.+++.|++.|++.|...|...+++.|++|+++      |+++++++..+.++|.++|+.+++++.+.        +
T Consensus       101 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~  174 (1146)
T PRK08633        101 GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEI  174 (1146)
T ss_pred             ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence            357889999999999999999999999999999987      99999999999999999999999999875        2


Q ss_pred             -cchhhhHHHHHHHH-HHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhc
Q 013611          102 -NWALGFGIPCAFMV-AALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLA  179 (439)
Q Consensus       102 -g~~~~F~i~~~~~~-i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (439)
                       +|++.+.+..+... +++++.+. .++.....++. .+...                        ........+..   
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~------------------------~~~~~~~~~~~---  225 (1146)
T PRK08633        175 LGRIAPAGLVLLAVAVLGLIFAYR-LPKVPAAAPEV-FDKKK------------------------YLFPKLLWRNL---  225 (1146)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhc-CcCCCCCCccc-ccccc------------------------cccHHHHHHHH---
Confidence             34444433332222 22222222 12111000000 00000                        00000000000   


Q ss_pred             CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHH
Q 013611          180 TPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITF  259 (439)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~  259 (439)
                                    ..+...+.+.   ...+....++.......+.++....   ...|.......+++..+..+..++.
T Consensus       226 --------------~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~s~~~~~g~~~~~~~ig~~~g  285 (1146)
T PRK08633        226 --------------KLLRSDRVLW---LAIIGLSYFWFISQLAQANFPAYAK---EVLGLDNTFQVQYLLAASAIGIGIG  285 (1146)
T ss_pred             --------------HHHhcCcHHH---HHHHHHHHHHHHHHHHHHhhHHHHH---HHhCCCcHHHHHHHHHHHHHHHHHH
Confidence                          0000111111   1111222222222222222222111   1111000112344555555555555


Q ss_pred             HHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHH
Q 013611          260 IPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLC  339 (439)
Q Consensus       260 ~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~  339 (439)
                      ..+.+++.    +|+       ...+.+.++.++++++++++...                      .+.+++++..++.
T Consensus       286 ~~~~g~l~----~r~-------~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~  332 (1146)
T PRK08633        286 SLLAGRLS----GRH-------IELGLVPLGALGLALSLFLLPTA----------------------PSLASVLVLFFLF  332 (1146)
T ss_pred             HHHHHHHh----CCc-------eEccchhHHHHHHHHHHHHHHHh----------------------hhHHHHHHHHHHH
Confidence            55555543    332       22334556666666666555543                      2455667778888


Q ss_pred             HHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          340 GIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       340 gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      |++.++..+....++.+.+|++.||+++|+.++..++|..+++.+.+.+.
T Consensus       333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888899999999999999999999999999988877766654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.50  E-value=1.9e-12  Score=128.06  Aligned_cols=86  Identities=17%  Similarity=0.240  Sum_probs=75.1

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHH-HHHHHhhhcccchhhhH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTI-LVVIYIQDNLNWALGFG  108 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~-~l~g~l~~~~g~~~~F~  108 (439)
                      .+.+.+++.|++.|++.|...|...+++.+++|+++      |++++++...+.++|..+++ .+++.+.+..+|++.|+
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  154 (379)
T TIGR00881        81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI  154 (379)
T ss_pred             hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence            367889999999999999999999999999999877      99999999999999999999 67888888889999999


Q ss_pred             HHHHHHHHHHHHH
Q 013611          109 IPCAFMVAALVLF  121 (439)
Q Consensus       109 i~~~~~~i~~~l~  121 (439)
                      +.++..++..++.
T Consensus       155 ~~~~~~~~~~~~~  167 (379)
T TIGR00881       155 VPGIIAIIVSLIC  167 (379)
T ss_pred             HHHHHHHHHHHHH
Confidence            8876655544443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.49  E-value=7.1e-12  Score=126.97  Aligned_cols=87  Identities=15%  Similarity=0.077  Sum_probs=75.1

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh------ccc
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD------NLN  102 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~------~~g  102 (439)
                      ..+...+++.|++.|+++|...|...+++.+++|+++      |+++.+++..+.++|.++|+.+++++.+      ..|
T Consensus        93 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g  166 (412)
T TIGR02332        93 ATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKG  166 (412)
T ss_pred             hcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence            3457789999999999999999999999999999876      9999999999999999999999999864      369


Q ss_pred             chhhhHHHHHHHHHHHHHH
Q 013611          103 WALGFGIPCAFMVAALVLF  121 (439)
Q Consensus       103 ~~~~F~i~~~~~~i~~~l~  121 (439)
                      ||+.|.+.++..++...+.
T Consensus       167 wr~~f~~~~~~~l~~~~~~  185 (412)
T TIGR02332       167 WQWLFLLEGFPSVILGVMT  185 (412)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            9999999876665544433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00898 2A0119 cation transport protein

Probab=99.49  E-value=1.7e-11  Score=127.23  Aligned_cols=317  Identities=14%  Similarity=0.097  Sum_probs=168.2

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+++.|++.|++.|+..|...+++.+.+|+++      |+++.++...+..+|.++++.++.++.+   ||+.|++
T Consensus       178 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~  248 (505)
T TIGR00898       178 PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLA  248 (505)
T ss_pred             ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHH
Confidence            467789999999999999999999999999999987      9999999999999999999999877754   9999998


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      .++..++..+..++..+..+....+   ....+-.+.+....+......+.          +..+.......   .....
T Consensus       249 ~~i~~~~~~~~~~~~~esp~~l~~~---~~~~~a~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~---~~~~~  312 (505)
T TIGR00898       249 VSLPTFLFFLLSWFVPESPRWLISQ---GRIEEALKILQRIAKINGKKLPA----------EVLSLSLEKDL---SSSKK  312 (505)
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHC---CCHHHHHHHHHHHHHHcCCCCCH----------HHHhhhhhhhh---hhccC
Confidence            8876666555443322211000001   11111112221111111100000          00000000000   00000


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611          190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP  269 (439)
Q Consensus       190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~  269 (439)
                      ..+..+....+++.   ...+.....|............   ..+ ..+    .+......+.++..+....+...+.+ 
T Consensus       313 ~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~----~~~~~~~~~~~~~~i~~~~~~~~l~d-  380 (505)
T TIGR00898       313 QYSFLDLFRTPNLR---KTTLCLMMLWFTTAFSYYGLVL---DLG-NLG----GNIYLDLFISGLVELPAKLITLLLID-  380 (505)
T ss_pred             CCcHHHHhCChHHH---HHHHHHHHHHHHHHHHHHHHhc---ccc-ccC----CChHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            00000011111111   1111111122221111111111   111 111    11112222333333333333344333 


Q ss_pred             hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611          270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG  349 (439)
Q Consensus       270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~  349 (439)
                         |.       +.++.+.+++++.+++++.+.+..                    ....++.+...++.+++.....+.
T Consensus       381 ---r~-------grr~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~  430 (505)
T TIGR00898       381 ---RL-------GRRYTMAASLLLAGVALLLLLFVP--------------------VDLYFLRTALAVLGKFGITSAFQM  430 (505)
T ss_pred             ---Hh-------CCHHHHHHHHHHHHHHHHHHHHcC--------------------CCchHHHHHHHHHHHHHHHHHHHH
Confidence               32       233455666777777766555431                    112233444455666666666777


Q ss_pred             hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 013611          350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFL  429 (439)
Q Consensus       350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~  429 (439)
                      .+.+..+..|.+.|++++|+.+....+|+.++|.+.+ ..+                 .+....+++.++++++++++.+
T Consensus       431 ~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~~~  492 (505)
T TIGR00898       431 VYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-----------------KWLFLPLVLFGGLALLAGILTL  492 (505)
T ss_pred             HHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-----------------HHHhhHHHHHHHHHHHHHHHHH
Confidence            7788899999999999999999999999999999888 432                 1122345666666666665554


Q ss_pred             HH
Q 013611          430 YF  431 (439)
Q Consensus       430 ~~  431 (439)
                      ++
T Consensus       493 ~l  494 (505)
T TIGR00898       493 FL  494 (505)
T ss_pred             cC
Confidence            44

>TIGR00897 2A0118 polyol permease family

Probab=99.48  E-value=4.6e-11  Score=120.57  Aligned_cols=77  Identities=13%  Similarity=0.046  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHH-HHHHHHHHHhhhcccchhhhHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGA-NSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~-~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      +...+.+.|.+.|+|.+...+...+.+.+.+|+++      |+++.++...+.++|. .+||.+++++.+.+||+..++.
T Consensus       104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897       104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            56677889999999999888888888999998877      9999999999999996 6899999999888897766655


Q ss_pred             HHHH
Q 013611          110 PCAF  113 (439)
Q Consensus       110 ~~~~  113 (439)
                      ....
T Consensus       178 ~~~~  181 (402)
T TIGR00897       178 ALAF  181 (402)
T ss_pred             HHHH
Confidence            4433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03699 putative transporter; Provisional

Probab=99.48  E-value=1.7e-11  Score=123.36  Aligned_cols=86  Identities=10%  Similarity=0.201  Sum_probs=73.1

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-cccchhhhH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD-NLNWALGFG  108 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~-~~g~~~~F~  108 (439)
                      .+.+.+++.|++.|++.|...+...+.+.+.+|+++      |+++++..+...++|..++|.+.+++.+ ..+||+.|.
T Consensus        93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~  166 (394)
T PRK03699         93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA  166 (394)
T ss_pred             chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            467788999999999999999999999999998766      8999999999999999999999988754 579999999


Q ss_pred             HHHHHHHHHHHHH
Q 013611          109 IPCAFMVAALVLF  121 (439)
Q Consensus       109 i~~~~~~i~~~l~  121 (439)
                      +.++..++..++.
T Consensus       167 ~~~~~~~~~~~~~  179 (394)
T PRK03699        167 CIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHHH
Confidence            8776655554443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.47  E-value=3.5e-11  Score=124.69  Aligned_cols=77  Identities=18%  Similarity=0.268  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh--------hcccchh
Q 013611           34 VFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ--------DNLNWAL  105 (439)
Q Consensus        34 ~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~--------~~~g~~~  105 (439)
                      .+++.|+++|+|.|+..|...+++.+++|+++      |+++.++...+.++|..+|+.++.++.        ..+|||+
T Consensus       120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~  193 (490)
T PRK10642        120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI  193 (490)
T ss_pred             HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence            58999999999999999999999999999988      999999999999999888887765543        2589999


Q ss_pred             hhHHHHHHHHH
Q 013611          106 GFGIPCAFMVA  116 (439)
Q Consensus       106 ~F~i~~~~~~i  116 (439)
                      .|++.++..++
T Consensus       194 ~f~i~~~~~l~  204 (490)
T PRK10642        194 PFFIALPLGII  204 (490)
T ss_pred             HHHHHHHHHHH
Confidence            99997654443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.47  E-value=8.5e-12  Score=121.77  Aligned_cols=92  Identities=18%  Similarity=0.279  Sum_probs=80.1

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHH--HHhhhcccchhh
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVV--IYIQDNLNWALG  106 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~--g~l~~~~g~~~~  106 (439)
                      ..+.+.+.+-.++.|.-+|+-.|.....++.+|+++|      |++..+++..+.|+|+++.|.+.  +++..+++||.+
T Consensus       114 s~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~  187 (448)
T COG2271         114 SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAA  187 (448)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHH
Confidence            3478888889999999999999999999999999998      99999999999999999999999  999999999999


Q ss_pred             hHHHHHHHH-HHHHHHHhcCc
Q 013611          107 FGIPCAFMV-AALVLFLLGTK  126 (439)
Q Consensus       107 F~i~~~~~~-i~~~l~~~~~~  126 (439)
                      |++++++.+ ++++.++..+.
T Consensus       188 f~~pgiiaiival~~~~~~rd  208 (448)
T COG2271         188 FYFPGIIAIIVALILLFLLRD  208 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhCC
Confidence            999986644 45555554333

>PRK11043 putative transporter; Provisional

Probab=99.47  E-value=3.9e-11  Score=120.80  Aligned_cols=87  Identities=15%  Similarity=0.183  Sum_probs=75.4

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+++.|++.|+|.+...+...+++.|.+++++      +.+.++......++|..+||.+++++.+.++||+.|++
T Consensus        92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~  165 (401)
T PRK11043         92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFAT  165 (401)
T ss_pred             cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            467788999999999999888888999999999876      88899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHH
Q 013611          110 PCAFMVAALVLFL  122 (439)
Q Consensus       110 ~~~~~~i~~~l~~  122 (439)
                      .++..++..+..+
T Consensus       166 ~~~~~~~~~~~~~  178 (401)
T PRK11043        166 LFAITLLLILPTL  178 (401)
T ss_pred             HHHHHHHHHHHHH
Confidence            8766666554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.46  E-value=3.2e-11  Score=122.67  Aligned_cols=271  Identities=13%  Similarity=0.139  Sum_probs=156.8

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-------hcccch
Q 013611           32 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ-------DNLNWA  104 (439)
Q Consensus        32 ~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~-------~~~g~~  104 (439)
                      ...+.+.+.+.+++.+...+...++..+..++++     ||+++.++...+.++|.+++..+.+.+.       +..+|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~  173 (437)
T TIGR00792        99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF  173 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence            4566677788889999988888999998876432     2999999999999999888877665554       246899


Q ss_pred             hhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCC
Q 013611          105 LGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVS  184 (439)
Q Consensus       105 ~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (439)
                      +.|.+.++..++...+.+...++.+.+.++++ +                             +..+..+..        
T Consensus       174 ~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~-~-----------------------------~~~~~~~~~--------  215 (437)
T TIGR00792       174 MFALVLALIGVVSLIICFFGTKERYSEIPKNI-E-----------------------------KKLSLKQIF--------  215 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCEecCCCCCccc-c-----------------------------cCCCHHHHH--------
Confidence            99988887666655544332222111001000 0                             000000000        


Q ss_pred             CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhh
Q 013611          185 LEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYD  264 (439)
Q Consensus       185 ~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~  264 (439)
                               +...+.|.+..   +.+.....+..+.........   ..+...+ . .-..+++..+..+..++..|+.+
T Consensus       216 ---------~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~-~~~~~~~~~~~~i~~ii~~~~~~  278 (437)
T TIGR00792       216 ---------KALFKNDQLLI---LCLAYLFYNLAFNIKNGVQVY---YFTYVLG-D-PELFSYMGSIAIVAGLIGVLLFP  278 (437)
T ss_pred             ---------HHHhCCHHHHH---HHHHHHHHHHHHHHHcchhhe---eEeeecC-C-hHHHHHHHHHHHHHHHHHHHHHH
Confidence                     00111122221   112222222222221111111   1111111 1 11123444555566666666666


Q ss_pred             hhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 013611          265 CIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADV  344 (439)
Q Consensus       265 ~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~  344 (439)
                      ++.+    |.       ++++.+.+|.++.++++....+..                     .+.+..++..++.+++.+
T Consensus       279 ~l~~----r~-------g~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~  326 (437)
T TIGR00792       279 RLVK----KF-------GRKILFAGGILLMVLGYLIFFFAG---------------------SNLPLILVLIILAGFGQN  326 (437)
T ss_pred             HHHH----Hh-------CcHHHHHHHHHHHHHHHHHHHHcc---------------------hhHHHHHHHHHHHHHHHH
Confidence            6543    32       334456677777777765554431                     134455666778888888


Q ss_pred             HHhhhhHHHHHhhcC-------hhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccC
Q 013611          345 FTIVGLQEFFYDQIP-------KELKSFGLSIYMSVLGVGGFLSSILVSIINEATSR  394 (439)
Q Consensus       345 l~~~~~~~~~~~~aP-------~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~  394 (439)
                      ...+...+++.+.+|       ++.+|+++|++++...+|+.+|+.+.+.+.+..++
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       327 FVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            887777777777665       66789999999999999999999999988765443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.45  E-value=6.1e-11  Score=120.91  Aligned_cols=73  Identities=14%  Similarity=0.232  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh--------hcccchh
Q 013611           34 VFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ--------DNLNWAL  105 (439)
Q Consensus        34 ~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~--------~~~g~~~  105 (439)
                      .++++|++.|++.|...|+..++..+++|+++      |+++.++...+.++|..+|+.+++.+.        +.+|||+
T Consensus       119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~  192 (434)
T PRK15075        119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI  192 (434)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence            57899999999999999999999999999988      999999999999999888888888763        4689999


Q ss_pred             hhHHHHH
Q 013611          106 GFGIPCA  112 (439)
Q Consensus       106 ~F~i~~~  112 (439)
                      .|++..+
T Consensus       193 ~f~~~~~  199 (434)
T PRK15075        193 PFLIGCL  199 (434)
T ss_pred             HHHHHHH
Confidence            9998653

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.45  E-value=6.4e-11  Score=118.95  Aligned_cols=84  Identities=11%  Similarity=0.124  Sum_probs=72.9

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+++.|++.|++.+...+...++..|.+++++      |+++.+++..+..+|..+||.+++++.+..+||+.|++
T Consensus        94 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~  167 (394)
T PRK11652         94 HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF  167 (394)
T ss_pred             ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence            357788999999999999988988899999988766      88999999999999999999999999998999999998


Q ss_pred             HHHHHHHHHH
Q 013611          110 PCAFMVAALV  119 (439)
Q Consensus       110 ~~~~~~i~~~  119 (439)
                      .++..++...
T Consensus       168 ~~~~~~~~~~  177 (394)
T PRK11652        168 LLLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHHH
Confidence            7765554433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.44  E-value=1.3e-10  Score=117.21  Aligned_cols=85  Identities=13%  Similarity=0.165  Sum_probs=72.7

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-ccchhhhH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN-LNWALGFG  108 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~-~g~~~~F~  108 (439)
                      .+.+.+++..++.++..+...|...++..+++|++|      |+++.++..++.++|..+|+.+++++.+. .|||..|+
T Consensus        92 ~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~  165 (402)
T PRK11902         92 AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL  165 (402)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence            456667777677889999999999999999999887      99999999999999999999999999885 59999999


Q ss_pred             HHHHHHHHHHHH
Q 013611          109 IPCAFMVAALVL  120 (439)
Q Consensus       109 i~~~~~~i~~~l  120 (439)
                      +.++..++....
T Consensus       166 i~a~~~l~~~l~  177 (402)
T PRK11902        166 LMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHHH
Confidence            988766554443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.44  E-value=2.2e-11  Score=126.13  Aligned_cols=78  Identities=13%  Similarity=0.163  Sum_probs=71.3

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+++.|++.|++.+...+...+++.+.+|+++      |++++++++.+.++|..+++.+++++.+.++||+.|++
T Consensus       106 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~  179 (496)
T PRK03893        106 PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI  179 (496)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence            367788999999999999999999999999999876      99999999999999999999999999999999999987


Q ss_pred             HHHH
Q 013611          110 PCAF  113 (439)
Q Consensus       110 ~~~~  113 (439)
                      ..+.
T Consensus       180 ~~~~  183 (496)
T PRK03893        180 GILP  183 (496)
T ss_pred             HHHH
Confidence            5543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.44  E-value=1.2e-10  Score=116.88  Aligned_cols=85  Identities=16%  Similarity=0.128  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIP  110 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~  110 (439)
                      +...+++.|++.|++.+...+...+++.+.+|+++      |++++++.+...++|..++|.+++++.+..+|++.|++.
T Consensus        90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~  163 (392)
T PRK10473         90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM  163 (392)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence            56678889999999999999999999999999877      999999999999999999999999998889999999988


Q ss_pred             HHHHHHHHHHH
Q 013611          111 CAFMVAALVLF  121 (439)
Q Consensus       111 ~~~~~i~~~l~  121 (439)
                      ++..++..++.
T Consensus       164 ~~~~~i~~~~~  174 (392)
T PRK10473        164 AAMGILVLLLS  174 (392)
T ss_pred             HHHHHHHHHHH
Confidence            76665555443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.42  E-value=2.5e-10  Score=122.56  Aligned_cols=87  Identities=16%  Similarity=0.202  Sum_probs=72.7

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc---------
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN---------  100 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~---------  100 (439)
                      .+.+.++++|++.|+|.|+..|...+++.+.+|++.      |++.+++..++..+|.++++.++.++...         
T Consensus       253 ~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~  326 (742)
T TIGR01299       253 QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGS  326 (742)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccc
Confidence            467889999999999999999999999999999876      99999999999999999999887766543         


Q ss_pred             ----ccchhhhHHHHHHHHHHHHHHH
Q 013611          101 ----LNWALGFGIPCAFMVAALVLFL  122 (439)
Q Consensus       101 ----~g~~~~F~i~~~~~~i~~~l~~  122 (439)
                          .+||+.|++.++..++.+++.+
T Consensus       327 ~~~~~gWR~l~~i~~lp~ll~ll~~~  352 (742)
T TIGR01299       327 AYQFHSWRVFVIVCAFPCVFAIGALT  352 (742)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHH
Confidence                3688988887766665554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.41  E-value=3e-11  Score=124.70  Aligned_cols=85  Identities=13%  Similarity=0.121  Sum_probs=66.5

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh---------c
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD---------N  100 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~---------~  100 (439)
                      .+...+++.|++.|++.+...+ ....+++++|+++      |++++++.+...|+|..+++.+.+.+..         .
T Consensus       122 ~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~  194 (476)
T PLN00028        122 SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF  194 (476)
T ss_pred             cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence            3566788889999999987654 4567899999877      9999999998889999888877776532         2


Q ss_pred             ccchhhhHHHHHHHHHHHHHH
Q 013611          101 LNWALGFGIPCAFMVAALVLF  121 (439)
Q Consensus       101 ~g~~~~F~i~~~~~~i~~~l~  121 (439)
                      .|||+.|++.++..++..++.
T Consensus       195 ~gWr~~f~i~g~l~l~~~l~~  215 (476)
T PLN00028        195 TAWRIAFFVPGLLHIIMGILV  215 (476)
T ss_pred             hhhHHHHHHHHHHHHHHHHHH
Confidence            589999999887666554443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.41  E-value=1.9e-11  Score=123.99  Aligned_cols=265  Identities=12%  Similarity=0.059  Sum_probs=151.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHh
Q 013611           72 KSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAI  151 (439)
Q Consensus        72 r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  151 (439)
                      +++.++......++|.++||.++|++.+ .+|++.|++.++..++..++++..+++.++++... +++            
T Consensus       139 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------  204 (420)
T PRK09528        139 SGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA-NAL------------  204 (420)
T ss_pred             ccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhc-cch------------
Confidence            6678899999999999999999999986 58999999888776666555444322211100000 000            


Q ss_pred             HhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHH
Q 013611          152 KTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQ-YTTFFTKQG  230 (439)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q-~~~~~~~~~  230 (439)
                                  .++.+...+-+                  ..+....+.++.+..........+..+.+ .+..+....
T Consensus       205 ------------~~~~~~~~~~~------------------~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~  254 (420)
T PRK09528        205 ------------GANASAVSLKD------------------ALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF  254 (420)
T ss_pred             ------------hcccccccHHH------------------HHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        00000000000                  00000011111111111111112222222 222222211


Q ss_pred             hhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013611          231 ATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLE  310 (439)
Q Consensus       231 ~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~  310 (439)
                      .  +...+   ....+.+..++.+...+..++.+++.+    |.       ++++.+.++.++.+++..+..+.      
T Consensus       255 ~--~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~-------g~~~~~~~~~~l~~~~~~l~~~~------  312 (420)
T PRK09528        255 A--TPEQG---TRVFGYLNSFQVFLEALIMFFAPFIIN----RI-------GAKNALLLAGTIMAVRIIGSGFA------  312 (420)
T ss_pred             h--ccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh-------CcchhhHHHHHHHHHHHHHHHhc------
Confidence            1  11111   112345566666666666666666544    32       23345667777777776666543      


Q ss_pred             HHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHH-HHHHhhhhhhhhhHHHhhhh
Q 013611          311 TAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSI-YMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl-~~~~~~iG~~ig~~l~~~~~  389 (439)
                                      .+.++++...++.+++.....+...+++.+..|++.+++..+. +++..++|+.+++.+.|.+.
T Consensus       313 ----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~  376 (420)
T PRK09528        313 ----------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY  376 (420)
T ss_pred             ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH
Confidence                            2456677778888888888777777889999999999988765 77888999999999999886


Q ss_pred             ccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q 013611          390 EATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKS  434 (439)
Q Consensus       390 ~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~  434 (439)
                      +..                ++...|...+++.++..++.+...++
T Consensus       377 ~~~----------------G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        377 DSI----------------GFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             Hhh----------------CchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            421                24567777777777777666655543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.36  E-value=4.7e-10  Score=112.59  Aligned_cols=83  Identities=13%  Similarity=0.089  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHH
Q 013611           35 FIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFM  114 (439)
Q Consensus        35 ~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~  114 (439)
                      +.....+.++..+...+...++..+..++++      ++.+.+...++..+|.++|..+.+++.+.+|||..|++.++..
T Consensus       100 ~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~  173 (390)
T TIGR02718       100 AVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVP  173 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            3444455666777777777777777766655      7778888888889999999999999999999999999988776


Q ss_pred             HHHHHHHHh
Q 013611          115 VAALVLFLL  123 (439)
Q Consensus       115 ~i~~~l~~~  123 (439)
                      ++..+..++
T Consensus       174 ~~~~~~~~~  182 (390)
T TIGR02718       174 LASLVCVLW  182 (390)
T ss_pred             HHHHHHHHH
Confidence            665554433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.36  E-value=2.1e-10  Score=115.44  Aligned_cols=290  Identities=10%  Similarity=0.026  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHH
Q 013611           34 VFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAF  113 (439)
Q Consensus        34 ~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~  113 (439)
                      .+.+++++.+++.+...|...++..|.-+  +      +.+.++......++|.++||.++|.+.+ ++|++.|++.++.
T Consensus       101 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~  171 (396)
T TIGR00882       101 GAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGF  171 (396)
T ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHH
Confidence            34556777888888888888777655322  1      3457888889999999999999998876 6999999988766


Q ss_pred             HHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCCCCch
Q 013611          114 MVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTL  193 (439)
Q Consensus       114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (439)
                      .++..++.+...++    +|+++ + ..+          .          .+.+++.               .  ...+.
T Consensus       172 ~~~~~~~~~~~~~~----~~~~~-~-~~~----------~----------~~~~~~~---------------~--~~~~~  208 (396)
T TIGR00882       172 ALILMLLLMFAKPK----APSSA-T-VAN----------A----------LGANASA---------------F--SLKLA  208 (396)
T ss_pred             HHHHHHHHHHhCCC----Cchhh-h-hhc----------c----------cccccCC---------------C--CHHHH
Confidence            66555443332221    11110 0 000          0          0000000               0  00000


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh-hcc-cCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhhc
Q 013611          194 EDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGA-TMD-RTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPIT  271 (439)
Q Consensus       194 ~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~-~~~-~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~  271 (439)
                      .+....|.++.+...   .......+.+....+..... ..+ ...  + ....+....+..+...+..+..+++.    
T Consensus       209 ~~~l~~~~~~~~~l~---~~~~~~~~~~~~~~~~~y~~~~~~~~~~--~-~~~~g~~~~~~~i~~~~~~~~~g~l~----  278 (396)
T TIGR00882       209 LELFRQRKFWMFVLY---VVGVACVYDVFDQQFANFFTSFFATPQQ--G-TRVFGYVTTMGELLNALIMFCAPLII----  278 (396)
T ss_pred             HHHHcCCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcccccc--c-hHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            011111122222111   22222222222221111111 111 111  1 11123444445455554444444433    


Q ss_pred             ccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhH
Q 013611          272 RYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQ  351 (439)
Q Consensus       272 ~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~  351 (439)
                      +|.       ++++.+.+|.++.++++......                      .+.+++++..++.+++.........
T Consensus       279 ~r~-------g~~~~l~~~~~l~~l~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       279 NRI-------GAKNALLIAGTIMSVRIIGSSFA----------------------TTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             HHh-------ccchhHHHHHHHHHHHHHHHHhc----------------------CChHHHHHHHHHHHHHHHHHHHHHH
Confidence            332       33345677777777766554432                      2566677778888988877766666


Q ss_pred             HHHHhhcChhhHHHHHHH-HHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q 013611          352 EFFYDQIPKELKSFGLSI-YMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLY  430 (439)
Q Consensus       352 ~~~~~~aP~~~~g~~~gl-~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~  430 (439)
                      +++.+..|++.+++..+. ++....+|+.+++.+.|.+.+.                .++...|.+.+++.++..++-.+
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~----------------~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS----------------IGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh----------------cccHHHHHHHHHHHHHHHHHHHH
Confidence            788888899999887766 6789999999999999988743                23466788878777777666443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.35  E-value=1.8e-12  Score=127.57  Aligned_cols=88  Identities=20%  Similarity=0.322  Sum_probs=79.7

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-chhhhH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN-WALGFG  108 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g-~~~~F~  108 (439)
                      ..++.+.+.|.++|+|++.+.|...++++|.||+++      |++.++++|+++++|..+|.+++.++....+ |||+|.
T Consensus       119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~  192 (493)
T KOG1330|consen  119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR  192 (493)
T ss_pred             HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence            578899999999999999999999999999999988      9999999999999999999999999988766 999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 013611          109 IPCAFMVAALVLFLL  123 (439)
Q Consensus       109 i~~~~~~i~~~l~~~  123 (439)
                      +.++.+++..++.++
T Consensus       193 ~~avl~vi~~~L~~~  207 (493)
T KOG1330|consen  193 GSAVLGVIVGLLVFL  207 (493)
T ss_pred             eehHHHHHHHHHHHh
Confidence            988877766654433

>TIGR00896 CynX cyanate transporter

Probab=99.34  E-value=4.2e-10  Score=111.39  Aligned_cols=260  Identities=8%  Similarity=0.044  Sum_probs=151.3

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc--cchhhhH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL--NWALGFG  108 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~--g~~~~F~  108 (439)
                      +...+.+.|++.|+|.|...+...+...+.++ ++      |++++++++.+.++|..+|+.+++.+.+..  +||+.|.
T Consensus        86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~  158 (355)
T TIGR00896        86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA  158 (355)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            45677899999999999988888888888886 35      899999999999999999999999988764  3999998


Q ss_pred             HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611          109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG  188 (439)
Q Consensus       109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (439)
                      +.++..++....+..   +.+++++++  ++.                           ..               ... 
T Consensus       159 ~~~~~~~~~~~~~~~---~~~~~~~~~--~~~---------------------------~~---------------~~~-  190 (355)
T TIGR00896       159 WWALPALLALLAWIP---QVRRRVAAN--QTT---------------------------TR---------------LTP-  190 (355)
T ss_pred             HHHHHHHHHHHHHhh---hhccccCCC--CCC---------------------------CC---------------CCC-
Confidence            766544443332221   111111110  000                           00               000 


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611          189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV  268 (439)
Q Consensus       189 ~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~  268 (439)
                          .+...+ +.....   .+........+....+..+...+  +.+.   .....+.+..+..+..++..++.+++.+
T Consensus       191 ----~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~lp~~~~--~~g~---~~~~~g~~~~~~~~~~i~~~~~~g~l~d  257 (355)
T TIGR00896       191 ----VRIWRS-PLAWQV---TVFFGLQSGLYYSLIGWLPAILI--SHGA---SAATAGSLLALMQLAQAASALLIPALAR  257 (355)
T ss_pred             ----chhhcC-HhHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence                000111 111111   11111122222222222222221  1111   1222345556666666666666666543


Q ss_pred             hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611          269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV  348 (439)
Q Consensus       269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~  348 (439)
                          |..      ..++.+.++..+.+++...+.+...                    .+.+   ...++.|++++...+
T Consensus       258 ----r~~------~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~---~~~~l~g~~~g~~~~  304 (355)
T TIGR00896       258 ----RVK------DQRGIVAVLAVLQLVGLCGLLFAPM--------------------HGLW---AWALVLGLGQGGAFP  304 (355)
T ss_pred             ----hhc------cchHHHHHHHHHHHHHHHHHHHhhh--------------------hHHH---HHHHHHHHhhhhHhH
Confidence                321      1123345666666666655554321                    1111   134677999988887


Q ss_pred             hhHHHHHhh-cChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhcc
Q 013611          349 GLQEFFYDQ-IPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA  391 (439)
Q Consensus       349 ~~~~~~~~~-aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~  391 (439)
                      .....+... .|++.+|.++|+.+....+|+.++|.+.|.+.+.
T Consensus       305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~  348 (355)
T TIGR00896       305 LALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI  348 (355)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766666544 4578889999999999999999999999988754

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.33  E-value=9.6e-10  Score=107.03  Aligned_cols=83  Identities=8%  Similarity=-0.030  Sum_probs=71.6

Q ss_pred             CCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-------
Q 013611           28 HHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN-------  100 (439)
Q Consensus        28 ~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~-------  100 (439)
                      ...+.+.+.++.+++|.|.+..++..++++++..++|+      +++.+++......+|.++||++++.+...       
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~   79 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSM   79 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhh
Confidence            34578999999999999999999999999999999887      88999999999999999999999987732       


Q ss_pred             ---------ccchhhhHHHHHHHHH
Q 013611          101 ---------LNWALGFGIPCAFMVA  116 (439)
Q Consensus       101 ---------~g~~~~F~i~~~~~~i  116 (439)
                               ..|++.|++.+....+
T Consensus        80 ~~~~~~~~~~~~~~~yl~ia~~~~~  104 (310)
T TIGR01272        80 QVATANAEAAKVHTPYLLLAGALAV  104 (310)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence                     4789999865544333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=7.6e-11  Score=114.02  Aligned_cols=96  Identities=16%  Similarity=0.021  Sum_probs=85.9

Q ss_pred             CCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhh
Q 013611           28 HHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGF  107 (439)
Q Consensus        28 ~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F  107 (439)
                      ...+.++++++|.++|+|.+....+..++++|.||+++     +|++++++.--++.+|-++||..||.+.|..|++..|
T Consensus       155 fg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPF  229 (464)
T KOG3764|consen  155 FGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPF  229 (464)
T ss_pred             HcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcH
Confidence            34577899999999999999999999999999999875     3999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCcce
Q 013611          108 GIPCAFMVAALVLFLLGTKTY  128 (439)
Q Consensus       108 ~i~~~~~~i~~~l~~~~~~~~  128 (439)
                      ++.+++.++...+-++..+..
T Consensus       230 lVL~~v~Lld~~L~l~vi~p~  250 (464)
T KOG3764|consen  230 LVLAIVLLLDGALQLLVIEPT  250 (464)
T ss_pred             HHHHHHHHHHHHHHHheeCcc
Confidence            999988888777665544433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.29  E-value=1.6e-09  Score=110.21  Aligned_cols=87  Identities=14%  Similarity=0.002  Sum_probs=66.7

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-----h-----
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ-----D-----   99 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~-----~-----   99 (439)
                      .+...+++.|++.|++ |...+.....+.++||+++      |+++++++....|+|..+++.+++.+.     .     
T Consensus       126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~  198 (462)
T PRK15034        126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVN  198 (462)
T ss_pred             CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4688899999999998 6678889999999999987      999999998888888887777766543     2     


Q ss_pred             --------cccchhhhHHHHHHHHHHHHHHHh
Q 013611          100 --------NLNWALGFGIPCAFMVAALVLFLL  123 (439)
Q Consensus       100 --------~~g~~~~F~i~~~~~~i~~~l~~~  123 (439)
                              ..+||.++++-.+..++..+++++
T Consensus       199 ~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~  230 (462)
T PRK15034        199 GVPQADGSVMSLANAAWIWVPLLAIATIAAWS  230 (462)
T ss_pred             cccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    234666666666555555555544

>TIGR00889 2A0110 nucleoside transporter

Probab=99.28  E-value=7.5e-10  Score=112.40  Aligned_cols=150  Identities=15%  Similarity=0.154  Sum_probs=100.4

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      +....++.+..++...+.+++.    +|.       +.++.+.++.++.++++.+......                  .
T Consensus       254 g~~~~~~~i~~i~~~~~~g~l~----dr~-------g~r~~l~~~~~~~~v~~~l~~~~~~------------------~  304 (418)
T TIGR00889       254 SIWMSLSQFSEIFFILTIPFFL----KRF-------GIKKVMLLSLVAWALRFGFFAYGDP------------------E  304 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHh-------CcHHHHHHHHHHHHHHHHHHHHcCc------------------c
Confidence            3444555555555555555544    332       3445667777777776655544210                  0


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHH-HHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYM-SVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~-~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                      ..+.+.+++..++.++++++..+....++.+..|++.||+++|+.+ ...++|+.+|+.+.|.+.+....++.       
T Consensus       305 ~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~-------  377 (418)
T TIGR00889       305 YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGT-------  377 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccC-------
Confidence            0123445667889999999988888889999999999999999997 67899999999999988753211110       


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFLYFAKS  434 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~  434 (439)
                         .++...|...+++.+++.++++++.++
T Consensus       378 ---~~~~~~f~~~~~~~~i~~~l~~~~~~~  404 (418)
T TIGR00889       378 ---FDWQTMWLFFAGYIAILAVLFMIFFKY  404 (418)
T ss_pred             ---CchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence               134567777777777777777766653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10133 L-fucose transporter; Provisional

Probab=99.27  E-value=2.5e-09  Score=109.19  Aligned_cols=64  Identities=17%  Similarity=0.152  Sum_probs=54.9

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ   98 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~   98 (439)
                      ..+...++++|+++|+|.|...+..++++.|..++++      |.+.++.+.....+|..+|+.+++.+.
T Consensus       114 a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999998755544      666789999999999999999988654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.26  E-value=3.5e-09  Score=110.13  Aligned_cols=83  Identities=14%  Similarity=0.282  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-----------
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD-----------   99 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~-----------   99 (439)
                      +...++++|++.|+|.|+..|...+++.+.+|+++      |+++.++.+...++|.++|+.++.++..           
T Consensus       114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~  187 (502)
T TIGR00887       114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD  187 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            36789999999999999999999999999999988      9999999999999999999988876532           


Q ss_pred             ------------cccchhhhHHHHHHHHHHHH
Q 013611          100 ------------NLNWALGFGIPCAFMVAALV  119 (439)
Q Consensus       100 ------------~~g~~~~F~i~~~~~~i~~~  119 (439)
                                  ..+||+.|.+.++..++..+
T Consensus       188 ~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~  219 (502)
T TIGR00887       188 EASCTGSCVPAVDYMWRILIGFGAVPALLALY  219 (502)
T ss_pred             cccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence                        24799999877755544433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.25  E-value=8.2e-09  Score=105.58  Aligned_cols=333  Identities=12%  Similarity=0.020  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHh--hhcc--------
Q 013611           32 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYI--QDNL--------  101 (439)
Q Consensus        32 ~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l--~~~~--------  101 (439)
                      ...++++..+.-++....++...++++|.+|+++.+    ++++++++....++|..+|+.++++.  .+.+        
T Consensus       114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~  189 (477)
T TIGR01301       114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC  189 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence            355666667777888889999999999999987622    46899999999999999999999975  2211        


Q ss_pred             -----cchhhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhh
Q 013611          102 -----NWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKA  176 (439)
Q Consensus       102 -----g~~~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (439)
                           +.+..|.+.++.++++..+..+..|+....++++  .+..+                     .++.+. +  +..
T Consensus       190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~--~~~~~---------------------~~~~~~-~--~~~  243 (477)
T TIGR01301       190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDD--FINSE---------------------AAPPSK-H--GEE  243 (477)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcccc--chhhh---------------------cccccc-c--chh
Confidence                 6788999999888888877665444432111110  00000                     000000 0  000


Q ss_pred             hhcCCCCCCCCCCCCchhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhh---hHHHHHHhhc-ccCCCCCcccc---chhh
Q 013611          177 LLATPDVSLEDGKLCTLEDVEEAKALL-RLIPIWATCLVYAIVFAQYT---TFFTKQGATM-DRTITRSIKIP---AASL  248 (439)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~v~~~k~~~-~~l~~~~~~~~~~~~~~q~~---~~~~~~~~~~-~~~~g~g~~~~---~~~~  248 (439)
                                  ..+ .+-....|.+. .+..+++.+..-|+.++.+.   +.+.-+..+- +......++-.   ..+.
T Consensus       244 ------------~~~-~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~  310 (477)
T TIGR01301       244 ------------AFF-GELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFG  310 (477)
T ss_pred             ------------hhH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHH
Confidence                        000 00011111110 11223334444555444433   3332221111 00000000000   1122


Q ss_pred             hhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHH-hHHHHHHHHHHHHHHHHHHHH---HHHHhhhCCCCCCCCC
Q 013611          249 QLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRI-GAGMLLSSISMVVAALVEIKR---LETAKEYGLIDKPNVT  324 (439)
Q Consensus       249 ~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i-~iG~~l~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  324 (439)
                      ..++.+...+.    ..++.++.++.       +.++++ .++.++.++++....+.....   ++.+..+... .+   
T Consensus       311 l~~~s~~~~i~----s~~l~~l~~~~-------g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~-~~---  375 (477)
T TIGR01301       311 LMLNSVVLGIT----SIGMEKLCRGW-------GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESL-PP---  375 (477)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHh-------ccchhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc-Cc---
Confidence            33444443332    33333333332       222333 677788888887776554200   0000000001 00   


Q ss_pred             Ccch-HHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCh--hhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCC
Q 013611          325 IPTS-VWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK--ELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWF  401 (439)
Q Consensus       325 ~~~~-~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~--~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~  401 (439)
                       +.. .+..+....+.|+........-++.+.+..|+  +..|.+||+.|.+..+.+.+.....|.+.+...        
T Consensus       376 -~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g--------  446 (477)
T TIGR01301       376 -PTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG--------  446 (477)
T ss_pred             -chhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC--------
Confidence             112 25566667788888887754444788899995  566999999999999999999988887654332        


Q ss_pred             CCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013611          402 ADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR  437 (439)
Q Consensus       402 ~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~  437 (439)
                            ++....+.+-++.++++++..++..+|-+.
T Consensus       447 ------~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       447 ------GGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             ------CCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence                  223446777778888888888887777654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.24  E-value=2.4e-09  Score=108.94  Aligned_cols=312  Identities=12%  Similarity=0.125  Sum_probs=185.1

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc-------cc
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL-------NW  103 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~-------g~  103 (439)
                      ....+.+...+..++...+.....++..|..++++     ||.+..++...+.++|.++...+.+.+.+..       +|
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~  176 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY  176 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence            34456777777899999999999999999998754     2999999999999999987777776655322       68


Q ss_pred             hhhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCC
Q 013611          104 ALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDV  183 (439)
Q Consensus       104 ~~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (439)
                      ++.+.+.++..++...+..+..|+-..+.+++  +                             +..++.+..       
T Consensus       177 ~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~--~-----------------------------~~~~~~~~~-------  218 (428)
T PF13347_consen  177 RWMALVLAIVGLVFFLITFFFVKERSVEVTEQ--E-----------------------------KKISLRDSL-------  218 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeecccccccc--c-----------------------------cccccccch-------
Confidence            88888888777776666655555411111111  0                             000000000       


Q ss_pred             CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhh
Q 013611          184 SLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIY  263 (439)
Q Consensus       184 ~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~  263 (439)
                                .+..+.|.+..   ++......+.......+......++.   ++ . +-..+.+..+..+..++..|+.
T Consensus       219 ----------~~~~~nr~~~~---l~~~~~~~~~~~~~~~~~~~y~~~~v---l~-~-~~~~~~~~~~~~~~~~v~~~~~  280 (428)
T PF13347_consen  219 ----------RSLFRNRPFRI---LLLAFFLQWLAFALMNTFLPYYFTYV---LG-N-EGLISIFMLIFFVASIVGSPLW  280 (428)
T ss_pred             ----------hhhcccchHHH---HHHHHHHHHhhhhhhhhHHHHHHHHH---hc-C-chhhHHHHHHHHHHHHHHHHHH
Confidence                      00111122222   22222333333332222222222111   11 0 1112334445555566666666


Q ss_pred             hhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHH
Q 013611          264 DCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIAD  343 (439)
Q Consensus       264 ~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige  343 (439)
                      .++..++           ++++.+.+|.++.+++..+..+...                    .+.++..+..++.|++.
T Consensus       281 ~~l~~r~-----------gk~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~i~~~l~gi~~  329 (428)
T PF13347_consen  281 GRLSKRF-----------GKKKVYIIGLLLAALGFLLLFFLGP--------------------GSPWLVLILFILAGIGY  329 (428)
T ss_pred             HHHHHHc-----------cceeehhhhHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHhHhhh
Confidence            6654333           3334667788888888777766531                    36778888889999999


Q ss_pred             HHHhhhhHHHHHhhcC-------hhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHH
Q 013611          344 VFTIVGLQEFFYDQIP-------KELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWL  416 (439)
Q Consensus       344 ~l~~~~~~~~~~~~aP-------~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~  416 (439)
                      +...+...++..+.++       ++..|..+|++++...+|..+++.+.+.+.....++++..    +-++.........
T Consensus       330 ~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~~----~q~~~~~~~i~~~  405 (428)
T PF13347_consen  330 GAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANAA----VQSASALSGIRIL  405 (428)
T ss_pred             cccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCcC----cCCHHHHHHHHHH
Confidence            9887666677776665       4568999999999999999999999998876655544320    1112222333334


Q ss_pred             HHHHHHHHHHHHHHHhccCccC
Q 013611          417 LAALSAGGLLAFLYFAKSYNRE  438 (439)
Q Consensus       417 ~~~l~~l~~~i~~~~~~~~~~~  438 (439)
                      .+.+-++..++-....++||-+
T Consensus       406 ~~~~p~~~~~~~~i~~~~y~l~  427 (428)
T PF13347_consen  406 FSIVPAIFLLLAIIFMRFYPLT  427 (428)
T ss_pred             HHHHHHHHHHHHHHHHhhccCC
Confidence            4444444444555666666543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.24  E-value=3.7e-09  Score=112.59  Aligned_cols=87  Identities=18%  Similarity=0.235  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc---------
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL---------  101 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~---------  101 (439)
                      .+..++++|++.|+|.+...|...+++.|.+|+++      |++++++++.+.++|+++|+++++++.+.+         
T Consensus       171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~  244 (633)
T TIGR00805       171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE  244 (633)
T ss_pred             eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence            46678899999999999999999999999999988      999999999999999999999999987643         


Q ss_pred             -------------cchhhhHHHHHHHHHHHHHHHh
Q 013611          102 -------------NWALGFGIPCAFMVAALVLFLL  123 (439)
Q Consensus       102 -------------g~~~~F~i~~~~~~i~~~l~~~  123 (439)
                                   +|+..|++.++..++..+.+++
T Consensus       245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~  279 (633)
T TIGR00805       245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF  279 (633)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                         2788899888776665544443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09848 glucuronide transporter; Provisional

Probab=99.22  E-value=1.2e-08  Score=104.40  Aligned_cols=94  Identities=12%  Similarity=0.064  Sum_probs=72.4

Q ss_pred             CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611          282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE  361 (439)
Q Consensus       282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~  361 (439)
                      +.++.+.+|.++.++++..+.+..                    ..+.|+..+..++.++|+++..+...+...+.+|.+
T Consensus       292 g~~~~~~~g~~~~~i~~~~~~~~~--------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~  351 (448)
T PRK09848        292 GKKNTFLIGALLGTCGYLLFFWVS--------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYG  351 (448)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            455677788888777776655321                    134566667778899999999888888888888765


Q ss_pred             -------hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCC
Q 013611          362 -------LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRD  395 (439)
Q Consensus       362 -------~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~  395 (439)
                             .+|.++|++++.+.+|..+|+.+.+.+.+...++
T Consensus       352 ~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~  392 (448)
T PRK09848        352 EYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYI  392 (448)
T ss_pred             HHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                   4699999999999999999999999876555443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.20  E-value=4e-09  Score=106.81  Aligned_cols=86  Identities=14%  Similarity=0.098  Sum_probs=71.7

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh---------
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD---------   99 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~---------   99 (439)
                      ..+.+.++++|++.|+|.|...+..++.+.+..|+++      |++..++.....++|..+||.+++.+..         
T Consensus        91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            3467889999999999999999999999999988766      8889999999999999999999998742         


Q ss_pred             -----------------cccchhhhHHHHHHHHHHHHH
Q 013611          100 -----------------NLNWALGFGIPCAFMVAALVL  120 (439)
Q Consensus       100 -----------------~~g~~~~F~i~~~~~~i~~~l  120 (439)
                                       ..+||+.|++.++..++..++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             246999998877655544433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.18  E-value=1.3e-09  Score=107.82  Aligned_cols=79  Identities=14%  Similarity=0.209  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh----------c
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD----------N  100 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~----------~  100 (439)
                      +.+.++++|++.|++.+.. +...++++|++|+++      |+++.+++....++|..+|+.+++.+..          .
T Consensus        90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  162 (366)
T TIGR00886        90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH  162 (366)
T ss_pred             hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            6778899999999997765 557889999999877      9999999999999999999888887665          2


Q ss_pred             ccchhhh-HHHHHHHHH
Q 013611          101 LNWALGF-GIPCAFMVA  116 (439)
Q Consensus       101 ~g~~~~F-~i~~~~~~i  116 (439)
                      .+||+.| ++.++...+
T Consensus       163 ~~w~~~~~~~~~~~~~~  179 (366)
T TIGR00886       163 LAWGWAFVIVPAGILLL  179 (366)
T ss_pred             ccccchhHHHHHHHHHH
Confidence            4899999 444444333

>PRK09669 putative symporter YagG; Provisional

Probab=99.16  E-value=2.3e-08  Score=102.30  Aligned_cols=68  Identities=16%  Similarity=0.209  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcC-------hhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCC
Q 013611          328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIP-------KELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRD  395 (439)
Q Consensus       328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP-------~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~  395 (439)
                      +.+.+++..++.++|++...+...+++.+.++       ++..|...|.+.+...+|..+|+.+.+.+.+...++
T Consensus       318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            45556666788999999988888888888775       455678899999999999999999999887766654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.15  E-value=3.6e-08  Score=96.86  Aligned_cols=307  Identities=13%  Similarity=0.142  Sum_probs=181.6

Q ss_pred             CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 013611           27 PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALG  106 (439)
Q Consensus        27 ~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~  106 (439)
                      +...........-.++|+|.+.......++.+|..||++      |.++-++.|...-+|..++..+.|.+-+.++..-.
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL  157 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERL  157 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence            344455566667778999999999999999999999988      99999999999999999999999988777766544


Q ss_pred             hHHH----HHHHHHHHHHHHhcCc-ceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCC
Q 013611          107 FGIP----CAFMVAALVLFLLGTK-TYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATP  181 (439)
Q Consensus       107 F~i~----~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (439)
                      .-+.    .+...+.++- +++.+ +.....+..                              .++...+.+.......
T Consensus       158 ~~v~~~~a~i~~~l~~ia-~wg~E~r~~~~~~~~------------------------------~~~~~~f~~a~~~~~~  206 (403)
T PF03209_consen  158 IQVIQGVALIALLLNLIA-LWGQEPRRSRRAAAA------------------------------ERPRPPFREAWRQVWA  206 (403)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHhcccCCcccccCC------------------------------CCCCccHHHHHHHHHh
Confidence            4332    2222222222 22222 111111000                              0000011111110000


Q ss_pred             CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccch---hhhhhHHHHHHH
Q 013611          182 DVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAA---SLQLFIGIGIIT  258 (439)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~---~~~~in~~~iii  258 (439)
                                 +   .+.++++  ..+++....|.+           |..-++..-|.-+.++++   .++.+.....++
T Consensus       207 -----------~---~~a~~f~--~fl~l~t~a~~~-----------QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~  259 (403)
T PF03209_consen  207 -----------S---PQARRFF--VFLFLGTLAFFM-----------QDVILEPYGGEVFGMSVGETTRLTAFWGGGTLL  259 (403)
T ss_pred             -----------C---CChhHHH--HHHHHHHHHHHh-----------hHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHH
Confidence                       0   0111121  112223333322           111111110001234443   344555555666


Q ss_pred             HHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHH
Q 013611          259 FIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLL  338 (439)
Q Consensus       259 ~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l  338 (439)
                      ...+.+++..|   +       .++.+...+|..+.++++........                   .-+.|.+.+..++
T Consensus       260 G~~~~g~~l~~---~-------~~~~~~a~~G~~~~~~~f~lii~a~~-------------------~~~~~~~~~~~~l  310 (403)
T PF03209_consen  260 GMLLAGFLLSR---R-------LGKKRTAALGCLLGALAFALIILAGP-------------------LGSPWLFRPGVFL  310 (403)
T ss_pred             HHHHHHHHhcC---C-------CCchHHHHHHHHHHHHHHHHHHHHHh-------------------cccchHHHHHHHH
Confidence            66566665432   2       23344455777777777766665532                   1246667888999


Q ss_pred             HHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHH
Q 013611          339 CGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLA  418 (439)
Q Consensus       339 ~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~  418 (439)
                      .|+|.++..+...+..++.++++..|+.+|.|...++++..+|..+++...+...      ++..+-....|...|.+=+
T Consensus       311 ~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~------~~~~~~~~~aY~~VF~lEa  384 (403)
T PF03209_consen  311 LGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR------ALFGNSPALAYGVVFALEA  384 (403)
T ss_pred             HHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhccCCcchHHHHHHHHHH
Confidence            9999999999988999999999999999999999999999999999888865532      2221101124556676666


Q ss_pred             HHHHHHHHHHHHHh
Q 013611          419 ALSAGGLLAFLYFA  432 (439)
Q Consensus       419 ~l~~l~~~i~~~~~  432 (439)
                      .+.+++.++..-+.
T Consensus       385 ~ll~~a~~ll~~l~  398 (403)
T PF03209_consen  385 VLLLAALVLLGRLD  398 (403)
T ss_pred             HHHHHHHHHHHHhh
Confidence            66666655544443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.14  E-value=5.6e-09  Score=102.27  Aligned_cols=293  Identities=13%  Similarity=0.085  Sum_probs=179.2

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc---chhhh
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN---WALGF  107 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g---~~~~F  107 (439)
                      +.+.+.+..++.|++.|. .....+.++.+||+++      ++.+.+++. .-|+|..+...++|++....+   ||...
T Consensus       104 ~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~  175 (417)
T COG2223         104 STWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVA  175 (417)
T ss_pred             chHHHHHHHHHHhcccce-ehcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            336788888999998776 5667788999999988      999999999 999999999999999999999   99999


Q ss_pred             HHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCC
Q 013611          108 GIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLED  187 (439)
Q Consensus       108 ~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (439)
                      .+..+.+++..+.+++..+...+.+++.  ++...                         .   .               
T Consensus       176 ~i~~~~l~v~~v~~~~~~~d~p~~r~~~--~~~~~-------------------------~---~---------------  210 (417)
T COG2223         176 GIYVVALAIAAVLAWLGMNDVPEHRASV--KPQLP-------------------------A---Q---------------  210 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhCCChhhhccc--cccch-------------------------h---H---------------
Confidence            9988888887777666444322111111  10000                         0   0               


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhh
Q 013611          188 GKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQY-TTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCI  266 (439)
Q Consensus       188 ~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~  266 (439)
                           .+.+...+....+..+...+..-++.+.-. +..+..       +.| -....++.+....++.-.+..|+.+++
T Consensus       211 -----~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~-------~fg-~~~~~Ag~~a~~f~~~g~l~Rp~GG~L  277 (417)
T COG2223         211 -----LKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVT-------QFG-LSPVTAGLIAFLFPLIGALARPLGGWL  277 (417)
T ss_pred             -----HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcC-CChhhHHHHHHHHHHHHHHHHhccchh
Confidence                 011111222333333333333333322221 122222       221 012334566666777777777777777


Q ss_pred             hhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchH----HHHHHHHHHHHHH
Q 013611          267 FVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSV----WWLIPQYLLCGIA  342 (439)
Q Consensus       267 ~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~l~gig  342 (439)
                      .|++.           ..+.+.+.+..++++..........       ++        ...+.    ...+...++.|+|
T Consensus       278 sDR~G-----------g~rv~~~~f~~~~~~~~~l~~~~~~-------~~--------~~~~~~~~~~~~l~l~~~~G~G  331 (417)
T COG2223         278 SDRIG-----------GRRVTLAVFVGMALAAALLSLFLTG-------FG--------HGGSFVVFVAVFLALFVFAGLG  331 (417)
T ss_pred             hhhcc-----------chhHHHHHHHHHHHHHHHHHccccc-------cc--------cCcchHHHHHHHHHHHHHhccC
Confidence            65443           3345566666666666555544210       00        01122    2244455666666


Q ss_pred             HHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHH
Q 013611          343 DVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSA  422 (439)
Q Consensus       343 e~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~  422 (439)
                      ++-+.-    .+-..- +++.|.+.|+-..+.++|+..=|...+...+.+               +.+...|+++....+
T Consensus       332 nGsvfk----~Ip~if-~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t---------------g~~~~~f~~~~~~~~  391 (417)
T COG2223         332 NGSVFK----MIPVIF-PKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT---------------GSYTGAFMLLLAFYL  391 (417)
T ss_pred             cchhee----echHHH-HhhhhHHHHHHHHhccccccchhHHHHHHHHhc---------------ccHHHHHHHHHHHHH
Confidence            665421    111112 237889999999999999988888888776544               345667888888888


Q ss_pred             HHHHHHHHHhccC
Q 013611          423 GGLLAFLYFAKSY  435 (439)
Q Consensus       423 l~~~i~~~~~~~~  435 (439)
                      ++.+..+...+|-
T Consensus       392 ~a~v~~~~~y~r~  404 (417)
T COG2223         392 VALVLTWALYARR  404 (417)
T ss_pred             HHHHHHHHHHHhc
Confidence            8888877776654

>TIGR00788 fbt folate/biopterin transporter

Probab=99.09  E-value=9.1e-09  Score=105.97  Aligned_cols=293  Identities=13%  Similarity=0.151  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHH
Q 013611           32 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPC  111 (439)
Q Consensus        32 ~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~  111 (439)
                      .....+.+++.+++.+...+...++..+..+ ++++   .+....++.|...++|.++|+.++|++.+.++|+..|++.+
T Consensus       120 ~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a  195 (468)
T TIGR00788       120 AKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITA  195 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence            3444457889999999999999999999999 4322   24557788899999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCCCC
Q 013611          112 AFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLC  191 (439)
Q Consensus       112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (439)
                      +..++.....++.+++.....|+.+++...   .+   .....                +..+..               
T Consensus       196 ~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~---~~---~~~~~----------------~~~~~~---------------  238 (468)
T TIGR00788       196 ALLLLQLFVSNLSKERRAFVRPRIGTYLEM---NM---ALLTL----------------GVLANV---------------  238 (468)
T ss_pred             HHHHHHHHHHHhcccccccccccccccchh---hh---hhhhh----------------hHHHHH---------------
Confidence            776666443333222100011110000000   00   00000                000000               


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhh
Q 013611          192 TLEDVEEAKALLRLIPIWATCLVYAIV-FAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPI  270 (439)
Q Consensus       192 ~~~~v~~~k~~~~~l~~~~~~~~~~~~-~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~  270 (439)
                       .+...+.++.++...++... .+... |...++.............| ......+.+....++..++...+.+++    
T Consensus       239 -~~~~~~l~~~l~~~~i~~~l-~fifl~~~~~~~~~~~~f~~~~~~lG-~s~~~~G~~~~~~~v~~i~g~~~~~~~----  311 (468)
T TIGR00788       239 -KVQILGLRGAIQLLEIAKPL-IFIFLSYANLPGASGSVFCATTQCLP-GGPSFSGMSKVVGNLGSLCGVGGYDRF----  311 (468)
T ss_pred             -HHHHHHHHHHHhcHHHHHHH-HHHHHHHhhcCCCCceeEEEEcccCC-CCcchhhhHHHHHHHHHHHHHHHHHHH----
Confidence             00000111111111111000 01111 12222110000000001222 112223444445555555554444443    


Q ss_pred             cccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhh
Q 013611          271 TRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGL  350 (439)
Q Consensus       271 ~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~  350 (439)
                      .+|       .+.++-+.++.++.+++......... +.+  ...+         ..+.++.....++.+++.++...+.
T Consensus       312 ~~~-------~~~r~~l~~~~~l~~~~~~~~~~l~~-~~~--~~~g---------i~~~~~~~~~~~l~~~~~g~~~~~~  372 (468)
T TIGR00788       312 LKT-------FPYRLLFGVTTLLYTLSSLFDLILVK-RWN--LAFG---------ISDEVFVLGDSIIAEVLAQLKFMPF  372 (468)
T ss_pred             Hhh-------CCHHHHHHHHHHHHHHHHhCceeeee-ccc--cccC---------CCCeeeeeehhHHHHHHHHHHHccH
Confidence            233       35566667777777666544321100 000  0000         0123345556678888888888888


Q ss_pred             HHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhcc
Q 013611          351 QEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA  391 (439)
Q Consensus       351 ~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~  391 (439)
                      ..++.+.+|++.+|+..|+....+++|+.+++.+++.+.+.
T Consensus       373 ~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~  413 (468)
T TIGR00788       373 LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET  413 (468)
T ss_pred             HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999988888654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.07  E-value=3.8e-08  Score=101.58  Aligned_cols=278  Identities=10%  Similarity=0.065  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-------cccch
Q 013611           32 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD-------NLNWA  104 (439)
Q Consensus        32 ~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~-------~~g~~  104 (439)
                      ...+++...+..++...+.....++..+..++.+     ||.+.+++.....++|..+++.++..+..       ..+|+
T Consensus       106 ~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~-----eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~  180 (473)
T PRK10429        106 YVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR-----EREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQ  180 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence            4445555566788888899999999999886533     29999999888889887777665543322       13566


Q ss_pred             hhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCC
Q 013611          105 LGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVS  184 (439)
Q Consensus       105 ~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (439)
                      +...+.++...+...+.++..|+-.. +++.+ +                          +..+..++.|..        
T Consensus       181 ~~~~i~~~~~~~~~~~~~~~~~e~~~-~~~~~-~--------------------------~~~~~~~~~~~~--------  224 (473)
T PRK10429        181 MFTLVLIAFFIVSTIITLRNVHEVYS-SDNQV-S--------------------------AEGSHLTLKDIV--------  224 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHcCceecCC-ccccc-c--------------------------ccccCCCHHHHH--------
Confidence            66666665555544444433332110 00000 0                          000000010000        


Q ss_pred             CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhh
Q 013611          185 LEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYD  264 (439)
Q Consensus       185 ~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~  264 (439)
                               +.+.+.|.++.+   ......++... +....+...  ...-..+ . .-..+.+..++.+..++..|+..
T Consensus       225 ---------~~~~~n~~~~~l---l~~~~~~~~~~-~~~~~~~~y--~~~y~~~-~-~~~~~~~~~~~~i~~ii~~~~~~  287 (473)
T PRK10429        225 ---------ALIYKNDQLSCL---LGMALAYNIAS-NIINGFAIY--YFTYVIG-D-ADLFPYYLSYAGAANLVTLILFP  287 (473)
T ss_pred             ---------HHHhcCHHHHHH---HHHHHHHHHHH-HHHhhheee--EEEEECC-C-HHHHHHHHHHHHHHHHHHHHHHH
Confidence                     001111222222   12222222222 212111111  1111111 1 11122344455555666666655


Q ss_pred             hhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 013611          265 CIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADV  344 (439)
Q Consensus       265 ~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~  344 (439)
                      ++.    +|.       ++++.+.++.++..++.+........                 .+.+.+++++..++.+++.+
T Consensus       288 ~l~----~r~-------gkk~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~~l~g~~~~  339 (473)
T PRK10429        288 RLV----KSL-------SRRILWAGASIFPVLSCGVLLLMGLA-----------------APHNALLIVIAGILLNIGTA  339 (473)
T ss_pred             HHH----HHc-------CcHHHHHHHHHHHHHHHHHHHHHhcc-----------------CchhHHHHHHHHHHHHHHHH
Confidence            543    332       33445556666555554443322100                 01235556667788899999


Q ss_pred             HHhhhhHHHHHhhcC-------hhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCC
Q 013611          345 FTIVGLQEFFYDQIP-------KELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRD  395 (439)
Q Consensus       345 l~~~~~~~~~~~~aP-------~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~  395 (439)
                      ...+...++..+.+|       ++..|.+.|.+.+..-+|..+|+.+.|.+.+...++
T Consensus       340 ~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~  397 (473)
T PRK10429        340 LFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYV  397 (473)
T ss_pred             HHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            988887788888866       555777999999999999999999999887665554

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.05  E-value=3.7e-08  Score=101.06  Aligned_cols=86  Identities=15%  Similarity=0.181  Sum_probs=76.6

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHh------hhccc
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYI------QDNLN  102 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l------~~~~g  102 (439)
                      -++.+.+++.|++.|+.++...|+..+..+.+|.++|      |+.-+++++...++|..+|.++...+      ....|
T Consensus       131 ~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g  204 (495)
T KOG2533|consen  131 VHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG  204 (495)
T ss_pred             HhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence            4578899999999999999999999999999999988      99999999999999999999998886      34689


Q ss_pred             chhhhHHHHHHHHHHHHH
Q 013611          103 WALGFGIPCAFMVAALVL  120 (439)
Q Consensus       103 ~~~~F~i~~~~~~i~~~l  120 (439)
                      |||.|++.+++.++..++
T Consensus       205 W~~~FiI~G~i~~~~gi~  222 (495)
T KOG2533|consen  205 WRWLFIIEGVITLVLGIV  222 (495)
T ss_pred             ceeehhHHHHHHHHHHhe
Confidence            999999999766654443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.98  E-value=9.9e-08  Score=99.42  Aligned_cols=315  Identities=14%  Similarity=0.087  Sum_probs=163.9

Q ss_pred             CCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhh
Q 013611           28 HHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGF  107 (439)
Q Consensus        28 ~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F  107 (439)
                      ...+...++.+..+.|+|.|... .....++|..|.+.      |..++.+..+..-+...+|+.++..+..+-+|||.|
T Consensus       127 tA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~  199 (599)
T PF06609_consen  127 TAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIF  199 (599)
T ss_pred             cCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHH
Confidence            34466779999999999987765 45666899998866      776666666555555556777777776678999999


Q ss_pred             HHHHHHHHHHHHHHHhc-Ccceeee-cCCCC--CCcchh--HHHHHHHHhHhhccccCcchhhcccc-c-chhhhhhhhc
Q 013611          108 GIPCAFMVAALVLFLLG-TKTYRFS-IKSKQ--RNPFAR--IGRVFVVAIKTRKATLASEDEAQSSQ-Q-FKFLNKALLA  179 (439)
Q Consensus       108 ~i~~~~~~i~~~l~~~~-~~~~~~~-~~~~~--~~~~~~--~~~~l~~a~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~  179 (439)
                      +++++...++++..++. ++..+.+ ++++.  ++.+.+  ..+.++.......+.++    ++... . ..| +++.+.
T Consensus       200 ~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlg----l~wgG~~~~~W-~Sa~VI  274 (599)
T PF06609_consen  200 YIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLG----LSWGGYPYYPW-KSAHVI  274 (599)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHH----HhccCCCCCCC-CCccch
Confidence            99988777776644332 2211111 11110  011111  22222222111000000    11111 1 123 222221


Q ss_pred             CC-C------CCCCCCC--------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCcccc
Q 013611          180 TP-D------VSLEDGK--------LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIP  244 (439)
Q Consensus       180 ~~-~------~~~~~~~--------~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~  244 (439)
                      .. .      ..+..|+        .+..+...++| .+..  ..+...+..+.|......|+.+...+-.+-..+ ...
T Consensus       275 a~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r-~~~~--~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~-~~~  350 (599)
T PF06609_consen  275 APLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRR-GFAA--LLVISFISGMNFFSVNILWPQQVVNVFGSDPIS-ITE  350 (599)
T ss_pred             hhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccch-HHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcc-cce
Confidence            11 0      0001111        11111122222 2211  112233344445555556666554321110000 012


Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .++......+...+...+.+.+..+..          +.+..+.+|.+++.+.+.++.....              ++  
T Consensus       351 ~~~~s~~~~fg~~~g~~i~g~l~~~ir----------~~Kw~li~~~~~~ta~~Gama~~~~--------------~n--  404 (599)
T PF06609_consen  351 IGWISSPVGFGSCAGAVILGLLFSKIR----------HIKWQLIFGSVLMTAFCGAMAAVRP--------------DN--  404 (599)
T ss_pred             eehhhhhHHHHHHHHHHHHHHHHHHcc----------chhHHHHHHHHHHHHHHHHHHHccC--------------CC--
Confidence            345555566665555555555442221          2234566777666665555554321              11  


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSII  388 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~  388 (439)
                        .+.+  +...++.++|-+.........++-.+|.+.-|+++|+...+|.+|+.+|..+...+
T Consensus       405 --~~~~--i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  405 --KNAA--IAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             --cchH--HHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence              1222  23356677777776555556667779999999999999999999999999887654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.95  E-value=2.6e-08  Score=96.13  Aligned_cols=286  Identities=11%  Similarity=0.095  Sum_probs=149.7

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh---cccchh
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD---NLNWAL  105 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~---~~g~~~  105 (439)
                      ..++.-++.+|++.|+..|-+ ..+.|+++|.+++++      |+.+++.......+|..+||.+||++.+   ..| +.
T Consensus       118 S~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~  189 (451)
T KOG2615|consen  118 SRNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SY  189 (451)
T ss_pred             HHHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cC
Confidence            345556777899999998874 557899999999987      9999999999999999999999999988   233 22


Q ss_pred             hhHH-HHHHHHHHHH-H-H--HhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcC
Q 013611          106 GFGI-PCAFMVAALV-L-F--LLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLAT  180 (439)
Q Consensus       106 ~F~i-~~~~~~i~~~-l-~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (439)
                      .|.. +.+....+.. + +  ++..+....++...+.++..+...       .          ..+....+|.++..-..
T Consensus       190 p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~-------~----------~~~~~~~~~~~~v~~lr  252 (451)
T KOG2615|consen  190 PFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAAD-------D----------RLALLKFARIFKVAALR  252 (451)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccchhhhhh-------h----------hhhhcchhhhhhhhhhc
Confidence            2333 3322222222 1 1  111111111110000011110000       0          00001111111111000


Q ss_pred             CCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh-hcccCCCCCccccchhhhhhHHHHHHHH
Q 013611          181 PDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGA-TMDRTITRSIKIPAASLQLFIGIGIITF  259 (439)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~g~g~~~~~~~~~~in~~~iii~  259 (439)
                            .+...+  ..+..+         .... ..+.|.-..+.|-.... .+...+| -..+..+.+-...++.+.++
T Consensus       253 ------n~p~~~--~i~~~~---------i~~l-~~~ly~~l~s~~~~t~~~l~~~rfg-~ss~~~G~vl~~tGl~m~~~  313 (451)
T KOG2615|consen  253 ------NPPLLD--FISVLR---------IFGL-HYFLYLELFSGLENTVLFLTHGRFG-YSSMQQGKVLSTTGLLMLVI  313 (451)
T ss_pred             ------Cccccc--hHHHHH---------HHHH-HHHHHHHHHHHHHhhHHHhhcCccC-CChhhheeeeehhhHHHHHH
Confidence                  000000  011111         1111 11222222222211111 1112222 11233344555555555443


Q ss_pred             HHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHH
Q 013611          260 IPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLC  339 (439)
Q Consensus       260 ~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~  339 (439)
                          +....|..++.. .    +...+...++.++.=.+++....                     .. ...+.....+.
T Consensus       314 ----ql~~~~~l~~~~-~----~~~a~l~~~l~~~vP~~llls~~---------------------~~-~~~l~~~s~l~  362 (451)
T KOG2615|consen  314 ----QLALVPILPRYK-G----NIKAVLLFSLLLIVPAFLLLSLA---------------------RT-PVVLYLGSTLK  362 (451)
T ss_pred             ----HHhccccccccc-c----chhhHHHHHHHHHHHHHHHHhcc---------------------cc-chhhhHHHHHH
Confidence                455666666542 1    12222233333222222222222                     12 23456677888


Q ss_pred             HHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          340 GIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       340 gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      ++......+.+...+.+..|.+.||+.+|+.....+++-++||++.|.+.
T Consensus       363 sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~  412 (451)
T KOG2615|consen  363 SFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF  412 (451)
T ss_pred             HHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence            88888889999999999999999999999999999999999999998775

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.94  E-value=1.1e-08  Score=94.99  Aligned_cols=314  Identities=11%  Similarity=0.165  Sum_probs=176.9

Q ss_pred             ccCCCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 013611           24 SCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNW  103 (439)
Q Consensus        24 ~~~~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~  103 (439)
                      +|.-..+.++.+.++|+++|+|.-..-.+.+.+...+|+.+|      ...+|+++....-+|+.+-..+.+++.++.+-
T Consensus       128 a~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~~  201 (459)
T KOG4686|consen  128 AAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR  201 (459)
T ss_pred             HhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHHHH
Confidence            455667789999999999999999999999999999999998      99999999999999999999999999886542


Q ss_pred             hhhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCC
Q 013611          104 ALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDV  183 (439)
Q Consensus       104 ~~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (439)
                         ++-...-..+++.+.+-. +..+               ..+.-+...                 .|.|.-.++..-.
T Consensus       202 ---~~~~~ghT~LG~~l~~~~-~tc~---------------~slical~l-----------------g~~D~rAerilh~  245 (459)
T KOG4686|consen  202 ---MFPGVGHTLLGLWLCFEV-KTCK---------------QSLICALSL-----------------GLSDDRAERILHL  245 (459)
T ss_pred             ---hcccchHHHHHHHHHHHH-HHHH---------------HHHHHHHHh-----------------hhhhhHHHHHHhh
Confidence               111111112222221110 0000               000000000                 1111111110000


Q ss_pred             CCCCCCCCchhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHH---HHHHH
Q 013611          184 SLEDGKLCTLEDVEEAKAL-LRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGI---GIITF  259 (439)
Q Consensus       184 ~~~~~~~~~~~~v~~~k~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~---~iii~  259 (439)
                      ..-+-++  +.+.+|++.. ..+..+++.+..|++......   ..-......+.|    +++....++++.   ...+.
T Consensus       246 e~g~~Ge--~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi---~lg~~fF~~rfG----lS~~~a~~i~s~vy~Isav~  316 (459)
T KOG4686|consen  246 EEGFLGE--EPKLTDVNTFYPPFWVLVIICVLYYVAWFPFI---TLGPMFFQKRFG----LSAVSAGNILSTVYGISAVL  316 (459)
T ss_pred             hcCcccC--CcccccccccCccHHHHHHHHHHHHHHHHHHh---hhhHHHHHHhhC----CChhhccchhhhhhhhhhhh
Confidence            0000000  0012222221 112223334445555444322   221111112232    333333333333   34556


Q ss_pred             HHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHH
Q 013611          260 IPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLC  339 (439)
Q Consensus       260 ~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~  339 (439)
                      .|+.+.+.++..++.          ..+..+.+..-++=..+.+..                     .++|   ..+.+.
T Consensus       317 spvfg~i~Dk~G~n~----------~wv~~a~~~tl~~H~~l~Ft~---------------------lsPy---~~m~~l  362 (459)
T KOG4686|consen  317 SPVFGAISDKYGFNL----------WWVASACILTLLGHSGLFFTF---------------------LSPY---TSMTFL  362 (459)
T ss_pred             hhhHHHhHhhhccee----------hhHHHHHHHHHHHhhhHHhhh---------------------ccHH---HHHHHH
Confidence            777788776554432          223333333222222222211                     2333   456778


Q ss_pred             HHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHH
Q 013611          340 GIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAA  419 (439)
Q Consensus       340 gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~  419 (439)
                      |++..+..-+.+-.+...+|++.-|++-|.-..++++|-++.+.+.+++.+...     +.       ...+.+|...+.
T Consensus       363 GLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g-----~y-------~~le~ffl~~~~  430 (459)
T KOG4686|consen  363 GLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG-----SY-------DNLEAFFLIIGL  430 (459)
T ss_pred             hhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC-----ch-------hhHHHHHHHHHH
Confidence            888888777778888899999999999999999999999999999999875321     01       234666766677


Q ss_pred             HHHHHHHHHHHHhcc
Q 013611          420 LSAGGLLAFLYFAKS  434 (439)
Q Consensus       420 l~~l~~~i~~~~~~~  434 (439)
                      +++....+.+.+.||
T Consensus       431 ~aL~svgil~~~N~k  445 (459)
T KOG4686|consen  431 MALTSVGILFYLNKK  445 (459)
T ss_pred             HHHHHHHHHhheecc
Confidence            777776666666554

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.90  E-value=1.9e-06  Score=88.72  Aligned_cols=93  Identities=19%  Similarity=0.245  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCccc
Q 013611          328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNR  407 (439)
Q Consensus       328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~  407 (439)
                      +.|.+.+..++.|+..+-.....-++..+..|+++.+...|+|.+..-..+.+||.+.+.+.+.+               
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t---------------  443 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT---------------  443 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence            34445556678888888888888899999999999999999999999999999999999998765               


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611          408 AHLDYFYWLLAALSAGGLLAFLYFAKSY  435 (439)
Q Consensus       408 ~~~~~~f~~~~~l~~l~~~i~~~~~~~~  435 (439)
                      ++..+-+..+.++.+++.+++..+..+.
T Consensus       444 g~~r~g~~~l~~lf~~gl~ll~~v~~~~  471 (477)
T PF11700_consen  444 GSQRYGFLFLLVLFLIGLILLFFVDVEK  471 (477)
T ss_pred             CCchhHHHHHHHHHHHHHHHHhhccchh
Confidence            2334567777788888888776665443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.86  E-value=1.3e-06  Score=88.05  Aligned_cols=129  Identities=16%  Similarity=0.227  Sum_probs=88.9

Q ss_pred             CCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCh
Q 013611          281 ITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK  360 (439)
Q Consensus       281 ~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~  360 (439)
                      .+..+.+.++.+..++=..+.+....              |   .......+.+.++++|+..++..++...++.+.+|+
T Consensus       270 ~g~~~ll~~a~~~~~vR~~l~a~~~~--------------~---~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~  332 (400)
T PF03825_consen  270 FGIKWLLLLALVAYAVRWLLYAYFSD--------------P---WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP  332 (400)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhcC--------------C---cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc
Confidence            35666777777777766666665410              0   001122244455689999999999999999999999


Q ss_pred             hhHHHHHHHHHHH-hhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCc
Q 013611          361 ELKSFGLSIYMSV-LGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYN  436 (439)
Q Consensus       361 ~~~g~~~gl~~~~-~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~  436 (439)
                      +.|++++|++... .++|+.+|..++|.+.+....+.          -..+..+|.+.+++.++..+++++.-|+-+
T Consensus       333 ~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~----------~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  333 ELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG----------MFDWSAVFLVFAVMALVILVLFVILFKPKH  399 (400)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh----------hhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            9999999998875 68999999999998875321110          012345666667777777777777755443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.85  E-value=1.7e-06  Score=84.61  Aligned_cols=67  Identities=13%  Similarity=0.018  Sum_probs=57.8

Q ss_pred             CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 013611           27 PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD   99 (439)
Q Consensus        27 ~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~   99 (439)
                      |...++..|+.++++++.|.|..+...++++++..++++      -++=.+.-...+.+|+++||.+++++..
T Consensus        99 a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738          99 ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            345688899999999999999999999999999999876      3455677777778999999999999876

>PRK11462 putative transporter; Provisional

Probab=98.85  E-value=2.9e-06  Score=87.30  Aligned_cols=87  Identities=10%  Similarity=0.154  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc-------cch
Q 013611           32 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL-------NWA  104 (439)
Q Consensus        32 ~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~-------g~~  104 (439)
                      ...+.+.-.+..++...+.....++.++..++.+     ||++..++...+.++|.++++.+...+.+..       +|+
T Consensus       109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~  183 (460)
T PRK11462        109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ  183 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence            4445555566788888888899999999988643     3999999999999999988887765544432       566


Q ss_pred             hhhHHHHHHHHHHHHHHHh
Q 013611          105 LGFGIPCAFMVAALVLFLL  123 (439)
Q Consensus       105 ~~F~i~~~~~~i~~~l~~~  123 (439)
                      ....+.++..++...+.+.
T Consensus       184 ~~~~i~~ii~~i~~~i~~~  202 (460)
T PRK11462        184 GGIAVLSVVAFMMLAFCFF  202 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            6666666555554444443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.84  E-value=2.1e-06  Score=85.81  Aligned_cols=119  Identities=12%  Similarity=0.109  Sum_probs=89.7

Q ss_pred             CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611          282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE  361 (439)
Q Consensus       282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~  361 (439)
                      ++++-+.++..++++=....++.                      .++|++++...++++-..+..++..-++.+..|++
T Consensus       287 g~k~~Lllag~i~~iRi~~~~~~----------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~r  344 (412)
T PF01306_consen  287 GAKNLLLLAGVIMAIRIIGSGFA----------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKR  344 (412)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHT------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GG
T ss_pred             ChHhHHHHHHHHHHHHHHHHhhh----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh
Confidence            55566666666666655555544                      46788889999999998899999999999999999


Q ss_pred             hHHHHHHHH-HHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCccC
Q 013611          362 LKSFGLSIY-MSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNRE  438 (439)
Q Consensus       362 ~~g~~~gl~-~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~~  438 (439)
                      ..++...+. .+..++|..+.+.+.|.+.+.                -++...|++++++.++..++-.+..+|-|++
T Consensus       345 lsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~----------------~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  345 LSATLYLVGFQFAKQIGIIILSPLAGYLYDR----------------IGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh----------------cCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            999998884 789999999999999988753                2345678889988888888877777766553

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.78  E-value=4.4e-07  Score=93.94  Aligned_cols=338  Identities=13%  Similarity=0.081  Sum_probs=186.6

Q ss_pred             CCchHHHHHHHH-HHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 013611           28 HHFQIIVFIFSL-YLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALG  106 (439)
Q Consensus        28 ~~~~~~~~~~~l-~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~  106 (439)
                      ...+.+.+++.- ++.|+|.|+.......+++.+|+++       |+.|.++-..+..+|.++-|.+.-++.+++|||+.
T Consensus       130 F~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~  202 (509)
T KOG2504|consen  130 FATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGA  202 (509)
T ss_pred             HHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHH
Confidence            344566777766 4589999999999999999888753       89999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHh-HhhccccCcchhhcccccc-hhhhhhhhcCCCCC
Q 013611          107 FGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAI-KTRKATLASEDEAQSSQQF-KFLNKALLATPDVS  184 (439)
Q Consensus       107 F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  184 (439)
                      +++-+...+-.++.....++.....+|+++ +.... ..-..... +........   .+..... +--+..+...   .
T Consensus       203 ~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~  274 (509)
T KOG2504|consen  203 LLIFGGISLNVLVAGALLRPLSPPKKPNEE-KDLRN-SAASVESTPKPVELRISE---RDSGLKKLSLSNLATLKR---G  274 (509)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcCCCchhh-hhhcc-cccccccccccccccccc---CCCCCCcccccchhhhhh---C
Confidence            988776554444443443331111111100 00000 00000000 000000000   0000000 0000000000   0


Q ss_pred             CCCCC--C-CchhhHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHH
Q 013611          185 LEDGK--L-CTLEDVEEAKALL---RLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIIT  258 (439)
Q Consensus       185 ~~~~~--~-~~~~~v~~~k~~~---~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii  258 (439)
                      ...+.  . .......|. .++   .++.+.+......+.+......+.....    ..| -.+-..+.+.++.++.-++
T Consensus       275 ~~~~~~~~~~~~~~~~d~-~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~----~~g-~~~~~aa~l~Siigi~~i~  348 (509)
T KOG2504|consen  275 PDKWRNSPLQAFLSMLDL-SLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK----SLG-LSSNDAAFLLSIIGVSDII  348 (509)
T ss_pred             CccccccchhhhhhhhhH-HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcC-CChhhhHHHHHHHHHhhhh
Confidence            00000  0 000000011 111   1222222222222222222222333332    111 1122233344455555555


Q ss_pred             HHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHH
Q 013611          259 FIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLL  338 (439)
Q Consensus       259 ~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l  338 (439)
                      ..++.+.+.+    +. .    .+......++++..+++..+.++.                      .+.+.++...++
T Consensus       349 gRi~~G~laD----~~-~----~~~~~~~~~~ll~~gl~~~~~p~~----------------------~~~~~l~~~~~~  397 (509)
T KOG2504|consen  349 GRIILGLLAD----KP-G----IRALVLFLLTLLIAGLARLFLPFA----------------------TTYVGLIVFSIL  397 (509)
T ss_pred             hhhhhhhhcC----cc-c----cchHHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHH
Confidence            5555555432    21 0    233444566666677666555544                      345667777888


Q ss_pred             HHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHH
Q 013611          339 CGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLA  418 (439)
Q Consensus       339 ~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~  418 (439)
                      .|+..+...........+.++.+.-+.+.|+..+..+++..+|+-+.|.+.+.+               ++|...|.+.+
T Consensus       398 fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t---------------g~Y~~~f~~~g  462 (509)
T KOG2504|consen  398 FGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT---------------GNYDHAFYFCG  462 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc---------------CCeeeehhhcC
Confidence            999988887666678999999999999999999999999999999999776654               33566778888


Q ss_pred             HHHHHHHHHHHHHh
Q 013611          419 ALSAGGLLAFLYFA  432 (439)
Q Consensus       419 ~l~~l~~~i~~~~~  432 (439)
                      +..++++++++...
T Consensus       463 ~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  463 LCFLLSAVLLLILR  476 (509)
T ss_pred             hHHHHHHHHHHHhH
Confidence            88888887766665

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.67  E-value=2.3e-05  Score=81.94  Aligned_cols=87  Identities=14%  Similarity=0.070  Sum_probs=77.5

Q ss_pred             CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 013611           27 PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALG  106 (439)
Q Consensus        27 ~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~  106 (439)
                      +...+.+.+++.|++.|++.++...+...+++|.++++.      |..+.++ +.....|+.+++..++++..  +||+.
T Consensus       166 a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~  236 (521)
T KOG0255|consen  166 AFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL  236 (521)
T ss_pred             HHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence            455688999999999999999999999999999999988      9999999 99999999999999999987  89999


Q ss_pred             hHHHHHHHHHHHHHHH
Q 013611          107 FGIPCAFMVAALVLFL  122 (439)
Q Consensus       107 F~i~~~~~~i~~~l~~  122 (439)
                      +++..+..++.++.++
T Consensus       237 ~~~~~~~~~~~~~~~~  252 (521)
T KOG0255|consen  237 FWIISIPSGLFLLLWF  252 (521)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9998876666655533

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.65  E-value=2.6e-05  Score=79.55  Aligned_cols=89  Identities=10%  Similarity=0.120  Sum_probs=74.3

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHH-H-hhhcccchhh
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVI-Y-IQDNLNWALG  106 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g-~-l~~~~g~~~~  106 (439)
                      ..+...+.++|++.|+..|.......-++.+..|++-      |+..-....+++++|-++|..++- . +...-.|++.
T Consensus       113 ~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l  186 (485)
T KOG0569|consen  113 APSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYL  186 (485)
T ss_pred             hhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHH
Confidence            4467889999999999999999999999999999987      999999999999999999965543 3 4455679999


Q ss_pred             hHHHHHHHHHHHHHHHh
Q 013611          107 FGIPCAFMVAALVLFLL  123 (439)
Q Consensus       107 F~i~~~~~~i~~~l~~~  123 (439)
                      +.+..+..++.+....+
T Consensus       187 ~~~~~i~~~~~l~~l~~  203 (485)
T KOG0569|consen  187 LAFPLIPALLQLALLPF  203 (485)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99988777766665544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.58  E-value=2.5e-05  Score=75.64  Aligned_cols=87  Identities=11%  Similarity=0.188  Sum_probs=74.5

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhhhHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL-NWALGFGI  109 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~-g~~~~F~i  109 (439)
                      +...++.+-++.|.|.+.......+.+.+.||++       -+..++.|....++|+++++.+...+.++. |||....+
T Consensus        98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~  170 (395)
T COG2807          98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF  170 (395)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence            5677888889999999999999999999999976       468999999999999999999999999887 79988877


Q ss_pred             HHHHHHHHHHHHHhc
Q 013611          110 PCAFMVAALVLFLLG  124 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~  124 (439)
                      =+...++++++++.-
T Consensus       171 WAl~allAl~~WlPq  185 (395)
T COG2807         171 WALLALLALLIWLPQ  185 (395)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            666666777666554

>PRK03545 putative arabinose transporter; Provisional

Probab=98.58  E-value=4e-06  Score=84.12  Aligned_cols=137  Identities=12%  Similarity=-0.012  Sum_probs=100.7

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      ++......+...+..+..+.+.    +|       .+.++.+..+.++.+++.....+.                     
T Consensus        47 g~~~~~~~~~~~~~~~~~g~l~----dr-------~g~r~~~~~~~~~~~~~~~~~~~~---------------------   94 (390)
T PRK03545         47 GLMLTIYAWVVALMSLPLMLLT----SN-------VERRKLLIGLFVLFIASHVLSALA---------------------   94 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----cC-------CChHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            4555566666666655555544    44       245567778888888887776654                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL  405 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l  405 (439)
                       .+.+++.+..+++|++.....+....++.+..|+++|++++|++....++|..+|+.+.+.+.+.              
T Consensus        95 -~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~--------------  159 (390)
T PRK03545         95 -WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY--------------  159 (390)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH--------------
Confidence             25777778888999999888888888999999999999999999999999999999998877532              


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611          406 NRAHLDYFYWLLAALSAGGLLAFLYF  431 (439)
Q Consensus       406 ~~~~~~~~f~~~~~l~~l~~~i~~~~  431 (439)
                        .+....|+..++++++..+..+..
T Consensus       160 --~gw~~~f~~~~~~~~l~~~~~~~~  183 (390)
T PRK03545        160 --LGWRTTFLAIGGGALITLLLLIKL  183 (390)
T ss_pred             --hcHHHHHHHHHHHHHHHHHHHHHh
Confidence              123566777777776665544443

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.57  E-value=1.7e-05  Score=80.26  Aligned_cols=87  Identities=8%  Similarity=0.053  Sum_probs=73.0

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG  108 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~  108 (439)
                      ..++..+.+.|++.|+++|... +....++.++|+++      |+++.+++..+.++|.++++++++++ ..+||++-+-
T Consensus       112 a~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~  183 (511)
T TIGR00806       112 GTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYST  183 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHH
Confidence            4578899999999999999999 99999999999877      99999999999999999999999995 4689997665


Q ss_pred             HH---HHHHHHHHHHHHh
Q 013611          109 IP---CAFMVAALVLFLL  123 (439)
Q Consensus       109 i~---~~~~~i~~~l~~~  123 (439)
                      ++   .....++.++.++
T Consensus       184 Ln~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       184 LNIISLVFMTFSVFLALF  201 (511)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            44   4444455554444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.57  E-value=6e-06  Score=83.66  Aligned_cols=145  Identities=14%  Similarity=0.062  Sum_probs=102.9

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .++..+...+...+..++.+.+.+++           ++++.+.+++++.+++..+.++.                    
T Consensus        45 ~g~~~s~~~~~~~~~~~~~g~l~dr~-----------G~r~~~~~~~~~~~~~~~~~~~~--------------------   93 (412)
T TIGR02332        45 FGLAATLFYAAYVICGIPSNIMLAII-----------GARRWIAGIMVLWGIASTATMFA--------------------   93 (412)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHh-----------ChHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            34556666666666666666655433           33346677888888887777654                    


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                        .+.+++++..++.|++++...+....++.+..|+++||+++|+++....+|..+++.+++.+.+...-..        
T Consensus        94 --~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--------  163 (412)
T TIGR02332        94 --TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA--------  163 (412)
T ss_pred             --cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--------
Confidence              2567788889999999999988888889999999999999999999999999999999887753110000        


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHh
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFLYFA  432 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~  432 (439)
                        ..+....|.+.++.+++..++.++..
T Consensus       164 --~~gwr~~f~~~~~~~l~~~~~~~~~~  189 (412)
T TIGR02332       164 --LKGWQWLFLLEGFPSVILGVMTWFWL  189 (412)
T ss_pred             --ccchhHHHHHHHHHHHHHHHHHhhcc
Confidence              01235677777777666555554443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.56  E-value=4.4e-06  Score=82.71  Aligned_cols=175  Identities=14%  Similarity=0.121  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCch
Q 013611          205 LIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITML  284 (439)
Q Consensus       205 ~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~  284 (439)
                      ++.+.++....-+..+....-+++.++..+..     +-..+++-++.++.+.+..|+...+..++-           .+
T Consensus        15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs-----~~~aG~lis~yAl~~ai~ap~l~~lt~r~~-----------Rr   78 (394)
T COG2814          15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVS-----EGAAGQLITAYALGVALGAPLLALLTGRLE-----------RR   78 (394)
T ss_pred             HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----------hH
Confidence            33444444444444444444455555433221     223578889999999999999888764333           33


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHH
Q 013611          285 QRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKS  364 (439)
Q Consensus       285 ~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g  364 (439)
                      +.+...+.++.+|.++..+.                      .+++.+++..++.|++.+..++.....+.+.+|+++|+
T Consensus        79 ~lLl~~l~lFi~~n~l~alA----------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~  136 (394)
T COG2814          79 RLLLGLLALFIVSNLLSALA----------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRG  136 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence            45566677788888777766                      36888999999999999999988889999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          365 FGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       365 ~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                      +++|+.+....++..+|.-++.++.+..      +|          ...|+.+++++++..+..+...+
T Consensus       137 ~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------GW----------R~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         137 RALALVFTGLTLATVLGVPLGTFLGQLF------GW----------RATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHh------hH----------HHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999988886532      34          67899999999988888777776

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.52  E-value=1.2e-05  Score=82.02  Aligned_cols=136  Identities=13%  Similarity=0.073  Sum_probs=98.8

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++.....+...+..++.+++.+++.           +++.+.++.++.+++.++.....                   
T Consensus        60 ~g~~~~~~~~~~~~~~~~~G~l~dr~g-----------~r~~~~~~~~~~~~~~~~~~~~~-------------------  109 (434)
T PRK11663         60 IGLLATLFYITYGVSKFVSGIVSDRSN-----------ARYFMGIGLIATGIINILFGFSS-------------------  109 (434)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhhcC-----------CchhHHHHHHHHHHHHHHHHHHh-------------------
Confidence            355666666777777777777655433           33456778888877776666542                   


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                         +.+.++...++.+++++...+.....+.+..|++.||+++|+++...++|+.+++.+.+.+.+.             
T Consensus       110 ---~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~-------------  173 (434)
T PRK11663        110 ---SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH-------------  173 (434)
T ss_pred             ---HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------
Confidence               4566666778889999888888888999999999999999999999999999999998877532             


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHH
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFL  429 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~  429 (439)
                         .+..+.|...++++++..++..
T Consensus       174 ---~gw~~~f~~~~i~~~~~~~~~~  195 (434)
T PRK11663        174 ---YGWRYGMMIAGIIAIVVGLFLC  195 (434)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHH
Confidence               1235567676666655544433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.52  E-value=9e-06  Score=82.05  Aligned_cols=135  Identities=13%  Similarity=0.043  Sum_probs=97.0

Q ss_pred             hhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCc
Q 013611          247 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIP  326 (439)
Q Consensus       247 ~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (439)
                      .......+...+..|+.+.+.+++           +.++.+..+.++.++++..+...                      
T Consensus        50 l~~~~~~l~~~~~~~~~G~l~dr~-----------g~k~~l~~~~~~~~~~~~~~~~~----------------------   96 (400)
T PRK11646         50 IALGLRQFIQQGLGIFGGAIADRF-----------GAKPMIVTGMLMRAAGFATMAIA----------------------   96 (400)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHh-----------CchHHHHHHHHHHHHHHHHHHHh----------------------
Confidence            334444445555566666665433           23345677888888877766543                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcc
Q 013611          327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLN  406 (439)
Q Consensus       327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~  406 (439)
                      .+.|++.+..++.|++++...++..+.+.+.+|++.|++++|+.....++|..+|+.+.+.+..                
T Consensus        97 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----------------  160 (400)
T PRK11646         97 HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----------------  160 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence            2567778888999999998888888899999999999999999999999999999999998752                


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHH
Q 013611          407 RAHLDYFYWLLAALSAGGLLAFLYF  431 (439)
Q Consensus       407 ~~~~~~~f~~~~~l~~l~~~i~~~~  431 (439)
                       .++...|+..+.+.++..++....
T Consensus       161 -~g~~~~f~~~~~~~~~~~i~~~~~  184 (400)
T PRK11646        161 -YDFRLVCATGAVLFVLAAAFNAWL  184 (400)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHh
Confidence             123456666666666655444333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.50  E-value=0.00014  Score=73.77  Aligned_cols=277  Identities=13%  Similarity=0.074  Sum_probs=154.4

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-------ccc
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD-------NLN  102 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~-------~~g  102 (439)
                      .+....++.-.+.+++..++.-...++.+.+.++.+     ||.+..+|.....++|.++...+.+.+..       ..|
T Consensus       110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g  184 (467)
T COG2211         110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALG  184 (467)
T ss_pred             cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Confidence            455566677788999999999999999999998743     39999999999999997776666655543       245


Q ss_pred             chhhhHHHHHHHHHHHHHHHhcCcc-eeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCC
Q 013611          103 WALGFGIPCAFMVAALVLFLLGTKT-YRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATP  181 (439)
Q Consensus       103 ~~~~F~i~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (439)
                      |+..-++.++...+...+.+...|+ ..++.|.+  +                            +...++.+.-     
T Consensus       185 ~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~--~----------------------------~~~~~~~~~~-----  229 (467)
T COG2211         185 YQGTALVLGVIGVILLLFCFFNVKERVVETQPTK--T----------------------------GVKLKLKDSF-----  229 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccCccccCc--c----------------------------cccccHHHHH-----
Confidence            5555555554444444444433332 11111111  0                            0000000000     


Q ss_pred             CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHH
Q 013611          182 DVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIP  261 (439)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~p  261 (439)
                                  ......|.++.   ..+.....+..++...+.+....   +-.+| ..+..+...........++..+
T Consensus       230 ------------~~~~~Nrp~~~---~l~~~l~~~~~~~i~~s~~~yy~---~y~lg-~~~l~~~~~~~~~~~~~l~~~~  290 (467)
T COG2211         230 ------------LLIFKNRPLLL---LLLMNLLLFIAFNIRGSIMVYYV---TYVLG-DPELFAYLLLLASGAGLLIGLI  290 (467)
T ss_pred             ------------HHHHccchHHH---HHHHHHHHHHHHHHHhhhhheeE---EEEcC-ChHHHHHHHHHHHHHHHHHHHH
Confidence                        00111222222   22233344444444444333221   11222 1122222222222222222222


Q ss_pred             hhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHH
Q 013611          262 IYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGI  341 (439)
Q Consensus       262 l~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gi  341 (439)
                           ..|.+.|+      +.+++.+.+|.++.+++...+.+..                    ..+.++.++..++.++
T Consensus       291 -----~~p~L~~~------~gkk~~~~~~~~~~~i~~~~~~f~~--------------------~~~~~l~~~~~~i~~~  339 (467)
T COG2211         291 -----LWPRLVKK------FGKKKLFLIGLLLLAVGYLLLYFTP--------------------AGSVVLIVVALIIAGV  339 (467)
T ss_pred             -----hHHHHHHH------hchHHHHHHHHHHHHHHHHHHHhhc--------------------CcchHHHHHHHHHHHH
Confidence                 33333332      3455677788888888877776653                    1245556666677777


Q ss_pred             HHHHHhhhhHHHHH-------hhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCC
Q 013611          342 ADVFTIVGLQEFFY-------DQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDG  396 (439)
Q Consensus       342 ge~l~~~~~~~~~~-------~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~  396 (439)
                      |.....+-..+++.       -..-++..|...|...+.+=+|.+++..+.+..-....+.+
T Consensus       340 g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~  401 (467)
T COG2211         340 GTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVP  401 (467)
T ss_pred             HhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            77775444433333       33667888999999999999999999999998876655544

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.49  E-value=1.9e-05  Score=82.01  Aligned_cols=140  Identities=11%  Similarity=0.113  Sum_probs=104.2

Q ss_pred             cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611          244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV  323 (439)
Q Consensus       244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (439)
                      ..+|..+...+...+..|+.+++.+++.+           ++.+.++.++.+++.++.+..                   
T Consensus        42 ~~~~~~~~~~l~~~~~~~~~G~l~D~~Gr-----------k~~l~~~~~~~~~~~~~~~~a-------------------   91 (495)
T PRK14995         42 ELLWIIDIYSLVMAGMVLPMGALGDRIGF-----------KRLLMLGGTLFGLASLAAAFS-------------------   91 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHHHHHHHHc-------------------
Confidence            34677777788888888888877664433           346778888888887776654                   


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhh-cChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCC
Q 013611          324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQ-IPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFA  402 (439)
Q Consensus       324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~-aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~  402 (439)
                         .+.+.+++..+++|+|.+...+.....+.+. .|++.|++++|++....++|..+||.+.+.+.+..      +|  
T Consensus        92 ---~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~------gw--  160 (495)
T PRK14995         92 ---PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF------YW--  160 (495)
T ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------Ch--
Confidence               2577788888999999999887776666665 58899999999999999999999999999886421      23  


Q ss_pred             CCcccchhhHHHHHHHHHHHHHHHHHHHHh
Q 013611          403 DNLNRAHLDYFYWLLAALSAGGLLAFLYFA  432 (439)
Q Consensus       403 ~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~  432 (439)
                              .+.|+....++++..++.+...
T Consensus       161 --------r~~f~i~~~~~~~~~~l~~~~l  182 (495)
T PRK14995        161 --------GSVFLINVPIVLVVMGLTARYV  182 (495)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHhC
Confidence                    5567666666666655544443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.46  E-value=8.8e-06  Score=79.60  Aligned_cols=135  Identities=18%  Similarity=0.228  Sum_probs=104.2

Q ss_pred             cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611          244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV  323 (439)
Q Consensus       244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (439)
                      ..+++..+..+...+..|+.+.+.+++           ++++.+.++.++.+++..+..+.                   
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~g~l~dr~-----------g~r~~l~~~~~~~~~~~~~~~~~-------------------   82 (352)
T PF07690_consen   33 QIGLLFSAFFLGSALFSPFAGYLSDRF-----------GRRRVLIIGLLLFALGSLLLAFA-------------------   82 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHS------------HHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCeeeEeehhhhhhhHHHHhhhh-------------------
Confidence            356677777787888888888876543           33446778888888874444432                   


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCC
Q 013611          324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD  403 (439)
Q Consensus       324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~  403 (439)
                         .+.+.+++..++.|+++....+....++.+..|+++|++++|+.....++|..+|+.+.+.+.+.            
T Consensus        83 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~------------  147 (352)
T PF07690_consen   83 ---SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY------------  147 (352)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH------------
T ss_pred             ---hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc------------
Confidence               24557888899999999999999999999999999999999999999999999999999988532            


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHH
Q 013611          404 NLNRAHLDYFYWLLAALSAGGLLA  427 (439)
Q Consensus       404 ~l~~~~~~~~f~~~~~l~~l~~~i  427 (439)
                          .+....|+..+++.++..++
T Consensus       148 ----~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  148 ----FGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             ----CHHCCHHHHHHHHHHHHHHH
T ss_pred             ----cccccccccccchhhhhhhh
Confidence                12344677778888877664

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.44  E-value=1.5e-05  Score=79.14  Aligned_cols=140  Identities=14%  Similarity=0.034  Sum_probs=103.3

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++..+..+...+..++.+.+.+++           ++++.+.++.++.+++.......                    
T Consensus        42 ~g~~~~~~~~~~~~~~~~~g~l~d~~-----------g~r~~~~~~~~~~~~~~~~~~~~--------------------   90 (385)
T TIGR00710        42 VQMTLTLYLLGFAAGQLLWGPLSDRY-----------GRRPVLLLGLFIFALSSLGLALS--------------------   90 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhc-----------CChHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            45566677777777777777765433           23345677777777777666544                    


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                        .+.+++++..++.|++.....+....++.+..|++.|++++|..+....+|..+|+.+.+.+.+.             
T Consensus        91 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------------  155 (385)
T TIGR00710        91 --NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW-------------  155 (385)
T ss_pred             --ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence              24667778889999999999888889999999999999999999999999999999998877532             


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                         .+....|+..+++.++..++.+...+
T Consensus       156 ---~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (385)
T TIGR00710       156 ---LSWHAIFAFLSLAGILLSALIFFILP  181 (385)
T ss_pred             ---cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence               12345666667766666665554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.44  E-value=3.5e-05  Score=77.64  Aligned_cols=132  Identities=10%  Similarity=-0.021  Sum_probs=99.7

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      ++...+..+...+..|+.+.+.+    |.       ++++.+..+.++.+++.......                     
T Consensus        58 g~~~~~~~~~~~~~~~~~g~l~D----r~-------grr~~~~~~~~~~~~~~~~~~~~---------------------  105 (394)
T PRK10213         58 GQSVTVTAFVAMFASLFITQTIQ----AT-------DRRYVVILFAVLLTLSCLLVSFA---------------------  105 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc----cc-------CcHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            45556777777777777776654    32       34456678888888777665543                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL  405 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l  405 (439)
                       .+.+++++..++.|++.+...+.....+.+..|++.|+.+++......++|..+|+.+.+.+.+..             
T Consensus       106 -~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-------------  171 (394)
T PRK10213        106 -NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-------------  171 (394)
T ss_pred             -ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------
Confidence             357778888899999999998888899999999999999999999999999999999999886321             


Q ss_pred             ccchhhHHHHHHHHHHHHHHH
Q 013611          406 NRAHLDYFYWLLAALSAGGLL  426 (439)
Q Consensus       406 ~~~~~~~~f~~~~~l~~l~~~  426 (439)
                         +....|+..+.++++..+
T Consensus       172 ---gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        172 ---GWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             ---CHHHHHHHHHHHHHHHHH
Confidence               235566666665555443

>PRK10054 putative transporter; Provisional

Probab=98.43  E-value=1.9e-05  Score=79.56  Aligned_cols=137  Identities=15%  Similarity=0.111  Sum_probs=95.8

Q ss_pred             cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611          244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV  323 (439)
Q Consensus       244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (439)
                      ..++..++..+..++..|+.+++.+++.+           ++.+.++.++.++++....+.+                  
T Consensus        44 ~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~-----------k~~~~~~~~~~~~~~~~~~~~~------------------   94 (395)
T PRK10054         44 LIGYAMTIALTIGVVFSLGFGILADKFDK-----------KRYMLLAITAFASGFIAIPLVN------------------   94 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCc-----------chhHHHHHHHHHHHHHHHHHHh------------------
Confidence            34566667777777778888887654333           2355677777777776666542                  


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCC
Q 013611          324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD  403 (439)
Q Consensus       324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~  403 (439)
                          +.+..+....+.+.+.....+....+..+..|++.|++++|+.+...++|..+|+.+.+.+...       +|   
T Consensus        95 ----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~-------g~---  160 (395)
T PRK10054         95 ----NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQ-------SI---  160 (395)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cc---
Confidence                3444445556667777777777778888999999999999999999999999999999977521       12   


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHH
Q 013611          404 NLNRAHLDYFYWLLAALSAGGLLAFLY  430 (439)
Q Consensus       404 ~l~~~~~~~~f~~~~~l~~l~~~i~~~  430 (439)
                             ...|...+++.+++.++..+
T Consensus       161 -------~~~f~~~~~~~~i~~i~~~~  180 (395)
T PRK10054        161 -------NLPFWLAAICSAFPLVFIQI  180 (395)
T ss_pred             -------CcHHHHHHHHHHHHHHHHHH
Confidence                   34566666666666544333

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.43  E-value=3.6e-05  Score=80.34  Aligned_cols=84  Identities=13%  Similarity=0.172  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-ccchhhhHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN-LNWALGFGI  109 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~-~g~~~~F~i  109 (439)
                      +...+.++|++.|+|.|+......-++++.-|++.      |+...+.+...+++|.++|..++....+. ++||..+.+
T Consensus       141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~  214 (513)
T KOG0254|consen  141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL  214 (513)
T ss_pred             hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence            78899999999999999999999999999999877      99999999999999999996555555443 589988877


Q ss_pred             HHHHHHHHHHH
Q 013611          110 PCAFMVAALVL  120 (439)
Q Consensus       110 ~~~~~~i~~~l  120 (439)
                      ..+..++..+.
T Consensus       215 ~~i~~~~~~~~  225 (513)
T KOG0254|consen  215 ALIPAVILALG  225 (513)
T ss_pred             HHHHHHHHHHH
Confidence            66555544444

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.42  E-value=9.5e-06  Score=67.76  Aligned_cols=131  Identities=17%  Similarity=0.281  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHH
Q 013611          252 IGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWW  331 (439)
Q Consensus       252 n~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
                      ..+..++..|+.+++.++.           ++++.+..+..+.+++.......                      .+.++
T Consensus         7 ~~~~~~~~~~~~g~~~d~~-----------g~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~   53 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDRF-----------GRKPVLLVGLFIFVLSTAMFALS----------------------SNITV   53 (141)
T ss_pred             ehhHHHHHHhhHHHHHhhc-----------chhHHHHHHHHHHHHHHHHHHHh----------------------ccHHH
Confidence            3455566666666654432           23345566666666665554433                      24566


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhh
Q 013611          332 LIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLD  411 (439)
Q Consensus       332 ~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~  411 (439)
                      .....++.+++.....+.....+.+..|++.|++.+++.+....+|..+++.+.+.+.+.                .++.
T Consensus        54 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~~  117 (141)
T TIGR00880        54 LIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF----------------LGWR  117 (141)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc----------------cchH
Confidence            777788999999988888888999999999999999999999999999999998877532                1223


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 013611          412 YFYWLLAALSAGGLLAFLYF  431 (439)
Q Consensus       412 ~~f~~~~~l~~l~~~i~~~~  431 (439)
                      ..|+..+.+.+++.+.....
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880       118 APFLFLAILALAAFILLAFL  137 (141)
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            45666666666665554443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.42  E-value=7.2e-07  Score=88.53  Aligned_cols=140  Identities=16%  Similarity=0.247  Sum_probs=112.1

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      +.++..-.+.-+++.|+.+++-+    |+       ++...+++|.++.+++.+..++..                    
T Consensus        71 Gll~~vf~v~~~i~sPl~gyLad----ry-------NR~~v~~vG~~iW~~Av~~~~fs~--------------------  119 (493)
T KOG1330|consen   71 GLLQTVFIVVFMIASPLFGYLAD----RY-------NRKRVIAVGIFIWTLAVFASGFSN--------------------  119 (493)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHh----hc-------CcceEEeeHHHHHHHHHHHHHHHH--------------------
Confidence            56677777778888999988754    32       455678899999998888777662                    


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL  405 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l  405 (439)
                        .+|.+++...+.|+||..+.|....++.+..|.+.||++++++++...+|+.+|-..++.+...+     ..|     
T Consensus       120 --~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-----~~W-----  187 (493)
T KOG1330|consen  120 --HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-----FWW-----  187 (493)
T ss_pred             --HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-----cce-----
Confidence              47777888899999999999999999999999999999999999999999999987777776433     123     


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          406 NRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       406 ~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                           .+.|.+.++++++.+++..++.+
T Consensus       188 -----r~af~~~avl~vi~~~L~~~f~~  210 (493)
T KOG1330|consen  188 -----RWAFRGSAVLGVIVGLLVFLFVR  210 (493)
T ss_pred             -----EEEEEeehHHHHHHHHHHHhhcc
Confidence                 45678888888888777665544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.42  E-value=1.9e-05  Score=77.61  Aligned_cols=142  Identities=15%  Similarity=0.128  Sum_probs=102.2

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++..+..+..++..|+.+.+.+++.+           ++.+.++.++.+++..+.......                 
T Consensus        36 ~g~~~~~~~~~~~i~~~~~G~l~dr~g~-----------r~~~~~~~~~~~~~~~~~~~~~~~-----------------   87 (365)
T TIGR00900        36 LSLAALAGMLPYVVLSPIAGALADRYDR-----------KKVMIGADLIRAVLVAVLPFVALL-----------------   87 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhch-----------hHHHHHHHHHHHHHHHHHHHHHHc-----------------
Confidence            4567777778888888888887664433           345566666666666655554310                 


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                      ...+.+++.+..++.|++.....+...+++.+..|++.|++++|.......+|..+|+.+.+.+.+.             
T Consensus        88 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-------------  154 (365)
T TIGR00900        88 GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT-------------  154 (365)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence            0125677788889999999999999999999999999999999999999999999999998887532             


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHH
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFLY  430 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~~  430 (439)
                         .+....|++.++..+++.++.+.
T Consensus       155 ---~g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       155 ---LGIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHh
Confidence               12244566655555555444433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.41  E-value=3.4e-05  Score=77.60  Aligned_cols=112  Identities=14%  Similarity=0.062  Sum_probs=85.9

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++.....+..++..++.+.+.+++.+           ++.+..+.++.+++.+...+.                    
T Consensus        52 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~-----------r~~~~~~~~~~~~~~~~~~~~--------------------  100 (406)
T PRK11551         52 MGWAFSAGILGLLPGALLGGRLADRIGR-----------KRILIVSVALFGLFSLATAQA--------------------  100 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------chhHHHHHHHHHHHHHHHHHh--------------------
Confidence            4566677777777777777776654333           345666766666665554443                    


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                        .+.+++++..++.|++.+...+.....+.+..|++.|++++|+.+....+|..+++.+.+.+.
T Consensus       101 --~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  163 (406)
T PRK11551        101 --WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA  163 (406)
T ss_pred             --ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence              256677888899999999998888899999999999999999999999999999988876654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.41  E-value=1.5e-05  Score=82.12  Aligned_cols=140  Identities=10%  Similarity=0.074  Sum_probs=104.6

Q ss_pred             cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611          244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV  323 (439)
Q Consensus       244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (439)
                      ..++......+..++..|+.+++.+++.           +++.+.++.++.+++..+....                   
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----------~r~~~~~~~~~~~~~~~~~~~~-------------------   87 (485)
T TIGR00711        38 QVQWVITSYMLANAISIPLTGWLAKRFG-----------TRRLFLISTFAFTLGSLLCGVA-------------------   87 (485)
T ss_pred             hhhHHHHHHHHHHHHHHHhHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHHhCc-------------------
Confidence            3467777888888888888888765433           3345677777777776665543                   


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCC
Q 013611          324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD  403 (439)
Q Consensus       324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~  403 (439)
                         .+.+.+++..+++|++.+...+....++.+..|++.|++++|++.....+|..+|+.+.+.+.+.      .+|   
T Consensus        88 ---~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------~~w---  155 (485)
T TIGR00711        88 ---PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN------YHW---  155 (485)
T ss_pred             ---CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC------cCc---
Confidence               25677888889999999999988889999999999999999999999999999999998877532      123   


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHHh
Q 013611          404 NLNRAHLDYFYWLLAALSAGGLLAFLYFA  432 (439)
Q Consensus       404 ~l~~~~~~~~f~~~~~l~~l~~~i~~~~~  432 (439)
                             .+.|+..+.++++..++.++..
T Consensus       156 -------~~~f~~~~~~~~~~~~~~~~~~  177 (485)
T TIGR00711       156 -------RWIFLINVPIGIIVVVVAFFIL  177 (485)
T ss_pred             -------eehhhhhhHHHHHHHHHHHHHc
Confidence                   3456666666666555544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.38  E-value=3.2e-05  Score=78.89  Aligned_cols=92  Identities=14%  Similarity=0.102  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIP  110 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~  110 (439)
                      +.....+.+++..+|......+..++..+.-.+++.+    |+..-++.+....+|.++|..++|.+.+..+++..|.+.
T Consensus        85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~  160 (433)
T PF03092_consen   85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS  160 (433)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence            4455667778899999999999999999998766532    788889999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhcCc
Q 013611          111 CAFMVAALVLFLLGTK  126 (439)
Q Consensus       111 ~~~~~i~~~l~~~~~~  126 (439)
                      .+...+..+..++..+
T Consensus       161 ~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  161 AALPLLMLIVALFLLE  176 (433)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            7666665544444333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10504 putative transporter; Provisional

Probab=98.37  E-value=4.8e-05  Score=78.25  Aligned_cols=140  Identities=13%  Similarity=0.137  Sum_probs=99.8

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++.....+...+..|+.+++.+++.+|           +.+..+.++.+++.+...+.                    
T Consensus        47 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------   95 (471)
T PRK10504         47 MHMVIVSYVLTVAVMLPASGWLADRVGVR-----------NIFFTAIVLFTLGSLFCALS--------------------   95 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchH-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence            34555666666667777777766544332           34556666666666554432                    


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                        .+.+.+++..+++|+|.+...+.....+.+..|++.+++++|+.....++|..+|+.+.+.+.+.             
T Consensus        96 --~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~-------------  160 (471)
T PRK10504         96 --GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY-------------  160 (471)
T ss_pred             --CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh-------------
Confidence              25666778889999999998888888899999999999999999999999999999999988642             


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                         .++.+.|.....+..+..+......+
T Consensus       161 ---~gw~~~f~~~~~~~~l~~~~~~~~~~  186 (471)
T PRK10504        161 ---ASWHWIFLINIPVGIIGAIATLMLMP  186 (471)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence               12355676666666666555554433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=3.4e-06  Score=82.25  Aligned_cols=147  Identities=14%  Similarity=0.115  Sum_probs=121.3

Q ss_pred             cccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 013611          242 KIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKP  321 (439)
Q Consensus       242 ~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  321 (439)
                      +...+++-...++.-++..|+.+.+.+++.           ...-+.+|++.+..+-++.++.+                
T Consensus       105 ~~~iG~LFaskA~~qllvnp~~G~l~~~iG-----------y~ipm~~Gl~vmf~sTilFafg~----------------  157 (464)
T KOG3764|consen  105 NTQIGLLFASKALVQLLVNPFFGNLIDRIG-----------YKIPMVAGLFVMFLSTILFAFGN----------------  157 (464)
T ss_pred             ccchhHHHHHHHHHHHHhcccchhhHHHhc-----------cccHHHHHHHHHHHHHHHHHHcc----------------
Confidence            455677778888888888888888765433           33467899999999988888774                


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhh-HHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCC
Q 013611          322 NVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKEL-KSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSW  400 (439)
Q Consensus       322 ~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~-~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~  400 (439)
                            +.+.++++..++|+|.......+.+++.+..|++. ||++||...-..++|..+||-++|++.+..        
T Consensus       158 ------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~--------  223 (464)
T KOG3764|consen  158 ------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA--------  223 (464)
T ss_pred             ------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc--------
Confidence                  46678899999999999999999999999999776 699999999999999999999999998653        


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013611          401 FADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR  437 (439)
Q Consensus       401 ~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~  437 (439)
                              +++.=|.++++++++...+-++..+..+.
T Consensus       224 --------Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~  252 (464)
T KOG3764|consen  224 --------GKSAPFLVLAIVLLLDGALQLLVIEPTEM  252 (464)
T ss_pred             --------CCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence                    23445999999999999988877765544

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.35  E-value=1.6e-05  Score=78.59  Aligned_cols=138  Identities=14%  Similarity=0.099  Sum_probs=103.9

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++..+..+...+..|+.+.+.+++.+|           +.+.++.++.+++..+..+.                    
T Consensus        31 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------   79 (399)
T TIGR00893        31 YGYVFSAFSWGYVVGQFPGGWLLDRFGAR-----------KTLAVFIVIWGVFTGLQAFA--------------------   79 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhcCcc-----------eeeHHHHHHHHHHHHHHHHH--------------------
Confidence            45677788888888888888876654433           23456777777766666554                    


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                        .+.+.+++..++.|++.+...+....++.+..|++.|++++|++....++|..+++.+.+.+.+..            
T Consensus        80 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------------  145 (399)
T TIGR00893        80 --GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF------------  145 (399)
T ss_pred             --cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC------------
Confidence              256778888899999999999999899999999999999999999999999999999988765321            


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFLYF  431 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~~~  431 (439)
                          ++.+.|...+++.++..++.+..
T Consensus       146 ----~~~~~~~~~~~~~~~~~~~~~~~  168 (399)
T TIGR00893       146 ----SWQWAFIIEGVLGIIWGVLWLKF  168 (399)
T ss_pred             ----CchHHHHHHHHHHHHHHHHhhhe
Confidence                12456767676666665555443

>PTZ00207 hypothetical protein; Provisional

Probab=98.35  E-value=0.00018  Score=75.56  Aligned_cols=82  Identities=12%  Similarity=0.048  Sum_probs=66.5

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHH-HHHHHHHhhhcccchhhhH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANS-TILVVIYIQDNLNWALGFG  108 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~i-g~~l~g~l~~~~g~~~~F~  108 (439)
                      .+.+.+++.|++.|+|.+.+.+.....+.++|| ++      |+++.++...+.++|+++ +++..+++.+  +|+..|+
T Consensus       118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl  188 (591)
T PTZ00207        118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF  188 (591)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence            478889999999999999999999999999997 44      999999999999999975 6666666653  5787787


Q ss_pred             HHHHHHHHHHHH
Q 013611          109 IPCAFMVAALVL  120 (439)
Q Consensus       109 i~~~~~~i~~~l  120 (439)
                      +.++..++..++
T Consensus       189 ~l~vl~~vv~ll  200 (591)
T PTZ00207        189 FLMSFALVVGIL  200 (591)
T ss_pred             HHHHHHHHHHHH
Confidence            777665554443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.33  E-value=4.9e-05  Score=76.07  Aligned_cols=137  Identities=15%  Similarity=0.135  Sum_probs=102.3

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .++....+.+..++..|+.+.+.+    |.       ++++.+.++.++.+++.++.++.                    
T Consensus        40 ~g~~~s~~~~~~~~~~~~~g~l~d----r~-------g~r~~~~~~~~~~~~~~~l~~~~--------------------   88 (382)
T PRK10091         40 AGHMISYYALGVVVGAPIIALFSS----RY-------SLKHILLFLVALCVIGNAMFTLS--------------------   88 (382)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHc----cC-------ccHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            456677778888888888777654    32       33456778888888887766654                    


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                        .+.+++.+..++.|++++...+.....+.+..|+++|+.++|++.....+|..+|+.+.+.+.+.             
T Consensus        89 --~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-------------  153 (382)
T PRK10091         89 --SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE-------------  153 (382)
T ss_pred             --CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh-------------
Confidence              25777888889999999998777777888999999999999999999999999999888877531             


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHH
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFLY  430 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~~  430 (439)
                         .+..+.|++.+++.++..+..+.
T Consensus       154 ---~gwr~~f~~~~~~~~~~~~~~~~  176 (382)
T PRK10091        154 ---FSWRYTFLLIAVFNIAVLASIYF  176 (382)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHH
Confidence               12355677777666665544333

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.32  E-value=6.5e-05  Score=74.20  Aligned_cols=127  Identities=18%  Similarity=0.170  Sum_probs=86.3

Q ss_pred             hhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHH
Q 013611          263 YDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIA  342 (439)
Q Consensus       263 ~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gig  342 (439)
                      .+.+..++.+++      ++..+.+.+|+++..+..+...+.+.                   +..+|   +.-++.|..
T Consensus       303 lg~ii~g~Ld~r------fg~k~vl~~~lvi~~~~~~~~~~~~~-------------------~~~f~---i~gll~g~s  354 (438)
T COG2270         303 LGAIIAGFLDER------FGSKPVLMIGLVILSIAALYLIFLEG-------------------ELDFW---ILGLLVGTS  354 (438)
T ss_pred             HHHHHHHHHHHH------hCCceeehHHHHHHHHHHHHHHHccc-------------------cHHHH---HHHHHHHHh
Confidence            344444445443      24445667777766655544444321                   12332   334677778


Q ss_pred             HHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHH
Q 013611          343 DVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSA  422 (439)
Q Consensus       343 e~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~  422 (439)
                      .+-.....-++..+.+|+++.++..|+++++.-.++.+||.+++.+.+.++.               ...-+..+..+.+
T Consensus       355 ~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~---------------~r~g~~~i~vll~  419 (438)
T COG2270         355 LGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS---------------SRAGVLSIIVLLL  419 (438)
T ss_pred             cchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc---------------hhhHHHHHHHHHH
Confidence            8888878888999999999999999999999999999999999999877632               2334555666677


Q ss_pred             HHHHHHHHHh
Q 013611          423 GGLLAFLYFA  432 (439)
Q Consensus       423 l~~~i~~~~~  432 (439)
                      ++.++++.+-
T Consensus       420 iGl~~L~~v~  429 (438)
T COG2270         420 IGLLLLLRVK  429 (438)
T ss_pred             hhHhhEEeec
Confidence            7766654443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.31  E-value=9.9e-08  Score=99.47  Aligned_cols=93  Identities=18%  Similarity=0.255  Sum_probs=3.0

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc----------
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN----------  100 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~----------  100 (439)
                      ....|+++.++.|+|+....+...+++=|..++++      -...+++++....+|+++|.++|+.....          
T Consensus       140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~  213 (539)
T PF03137_consen  140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD  213 (539)
T ss_dssp             ------------SSS-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence            56889999999999999999999999999998887      67899999999999999999999976421          


Q ss_pred             -----------c-cchhhhHHHHHHHHHHHHHHHhcCccee
Q 013611          101 -----------L-NWALGFGIPCAFMVAALVLFLLGTKTYR  129 (439)
Q Consensus       101 -----------~-g~~~~F~i~~~~~~i~~~l~~~~~~~~~  129 (439)
                                 . .|+++|++.++..++..+-+++..|+.+
T Consensus       214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp  254 (539)
T PF03137_consen  214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP  254 (539)
T ss_dssp             -----------------------------------------
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence                       2 4999999988777766654444344343

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.29  E-value=9.1e-05  Score=74.22  Aligned_cols=139  Identities=16%  Similarity=0.092  Sum_probs=99.6

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .++...+..+...+..|+.+++.+++.+           ++.+.+|.++.+++.......                    
T Consensus        40 ~~~~~~~~~~~~~~~~~~~G~l~Dr~g~-----------r~~l~~~~~~~~i~~~~~~~~--------------------   88 (392)
T PRK10473         40 LHIAFSVYLAGMAAAMLFAGKIADRSGR-----------KPVAIPGAALFIIASLLCSLA--------------------   88 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHHhCC-----------hHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            3455566666777777888887764432           245667777777776665543                    


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                        .+.++++...++.|++.+...+.....+.+..|++.|++++|+.+....+|..+++.+.+.+.+.             
T Consensus        89 --~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~-------------  153 (392)
T PRK10473         89 --ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK-------------  153 (392)
T ss_pred             --CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------
Confidence              24566777788999999988888888999999999999999999999999999999888776431             


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHh
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFLYFA  432 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~  432 (439)
                         .++...|++.++++++..++.....
T Consensus       154 ---~g~~~~~~~~~~~~~i~~~~~~~~~  178 (392)
T PRK10473        154 ---FPWQSLFYTMAAMGILVLLLSLFIL  178 (392)
T ss_pred             ---cChHHHHHHHHHHHHHHHHHHHHHc
Confidence               1234566666666666655544433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.28  E-value=5.7e-05  Score=75.45  Aligned_cols=114  Identities=16%  Similarity=0.087  Sum_probs=89.9

Q ss_pred             cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611          244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV  323 (439)
Q Consensus       244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (439)
                      ..+++..+..+...+..|+.+.+.+++.+           ++.+.++.++.+++.++..+.                   
T Consensus        48 ~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~-----------r~~~~~~~~~~~~~~~~~~~~-------------------   97 (405)
T TIGR00891        48 DAASLISAALISRWFGALMFGLWGDRYGR-----------RLPMVTSIVLFSAGTLACGFA-------------------   97 (405)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            34567777777888888888877664433           345667777777776665544                   


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                         .+.+.+....++.|++++...+....++.+..|++.|++++|+.+...++|..+++.+.+.+.+
T Consensus        98 ---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~  161 (405)
T TIGR00891        98 ---PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP  161 (405)
T ss_pred             ---ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2566677888999999999988888999999999999999999999999999999998887753

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.27  E-value=8.7e-05  Score=74.55  Aligned_cols=138  Identities=14%  Similarity=0.161  Sum_probs=96.9

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      +.+..+..+...+..|+.+.+.++..           +++.+..+.++.+++..+....                     
T Consensus        57 g~~~~~~~~~~~~~~~~~g~l~dr~g-----------~r~~~~~~~~~~~~~~~~~~~~---------------------  104 (408)
T PRK09874         57 GLVFSITFLFSAIASPFWGGLADRKG-----------RKIMLLRSALGMGIVMVLMGLA---------------------  104 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhC-----------cHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            45566777777888888887765432           2345566777777766655543                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL  405 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l  405 (439)
                       .+.+++++..++.|++.... +.....+.+..|++.|+.++|+......+|..+++.+.+.+.+.              
T Consensus       105 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------------  168 (408)
T PRK09874        105 -QNIWQFLILRALLGLLGGFV-PNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS--------------  168 (408)
T ss_pred             -hhHHHHHHHHHHHHHhhhhH-HhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence             25666777888888876654 55557788899999999999999999999999999999877532              


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          406 NRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       406 ~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                        .+....|+..+++.++..++.+...+
T Consensus       169 --~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (408)
T PRK09874        169 --YGLRPVFFITASVLFLCFLVTLFCIR  194 (408)
T ss_pred             --hCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              12345677777777666665544433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.26  E-value=4.9e-05  Score=80.39  Aligned_cols=106  Identities=20%  Similarity=0.290  Sum_probs=84.5

Q ss_pred             ccCCCCCCCccCCCCc-----------hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHH
Q 013611           15 DCQNNNTAKSCSPHHF-----------QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGI   83 (439)
Q Consensus        15 ~~~~~~~~~~~~~~~~-----------~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~   83 (439)
                      .|++|+.+..|.+...           -+..++.+.++.|+|+-.+.|...+++=|...+++      -...++++|...
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~  282 (735)
T KOG3626|consen  209 FCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKN------SPLYLGILYSMA  282 (735)
T ss_pred             hhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccC------CcHHHHHHHHHH
Confidence            4666666666663211           34478899999999999999999999999888877      678999999999


Q ss_pred             HHHHHHHHHHHHHhhhc-------------------ccchhhhHHHHHHHHHHHHHHHhcCc
Q 013611           84 SFGANSTILVVIYIQDN-------------------LNWALGFGIPCAFMVAALVLFLLGTK  126 (439)
Q Consensus        84 nlG~~ig~~l~g~l~~~-------------------~g~~~~F~i~~~~~~i~~~l~~~~~~  126 (439)
                      .+|+++|.++|++....                   -.|+++|++++.+.++..+-+++..|
T Consensus       283 ~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk  344 (735)
T KOG3626|consen  283 ILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK  344 (735)
T ss_pred             HhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            99999999999987542                   25889999999888887776555444

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.25  E-value=7e-05  Score=76.48  Aligned_cols=145  Identities=14%  Similarity=0.023  Sum_probs=97.5

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++..+..+...+..++.+++.+++.+           ++.+.++.++.+++.+.......                  
T Consensus        63 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~-----------~~~~~~~~~~~~~~~~~~~~~~~------------------  113 (438)
T TIGR00712        63 LGFALSAISIAYGFSKFIMGSVSDRSNP-----------RVFLPAGLILSAAVMLLMGFVPW------------------  113 (438)
T ss_pred             hHHHHHHHHHHHHHhhhccchhhhccCC-----------ceehHHHHHHHHHHHHHHhcccc------------------
Confidence            4556666666667766777776543332           23456677777777665543310                  


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                      ...+.+.+.+..++.|++++...+.....+.+..|++.||+++|+++...++|+.+++.+.+......            
T Consensus       114 ~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~------------  181 (438)
T TIGR00712       114 ATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF------------  181 (438)
T ss_pred             ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh------------
Confidence            01245556667788899998887777788899999999999999999999999999988776543210            


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                         .+....|+..++++++..++.++..+
T Consensus       182 ---~~w~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       182 ---NDWHAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             ---hhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence               12255677777777776655544433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.25  E-value=3.4e-05  Score=79.71  Aligned_cols=144  Identities=11%  Similarity=0.034  Sum_probs=103.7

Q ss_pred             cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611          244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV  323 (439)
Q Consensus       244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (439)
                      ..+.+.....+...+..++.+++.++.          ++.++.+.+|.++.+++.+++++..                  
T Consensus        49 ~ag~~~~~~~~~~~~~~~~~G~laDr~----------~G~~~~l~~~~~~~~~g~~~~~~~~------------------  100 (475)
T TIGR00924        49 QAFIIFGAYSALVYLLTSVGWWFGDRV----------WGTKKTMVLGGIVLMLGHFMLAMSI------------------  100 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhh----------cchHHHHHHHHHHHHHHHHHHHhcc------------------
Confidence            345566666667777777777766541          1334567788888888877766531                  


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh---hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCC
Q 013611          324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE---LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSW  400 (439)
Q Consensus       324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~---~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~  400 (439)
                          +.+.+.+..++.++|+++..++...++.++.|++   .|+++.++++...++|..+|+.+.+.+.+.         
T Consensus       101 ----~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~---------  167 (475)
T TIGR00924       101 ----YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN---------  167 (475)
T ss_pred             ----cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh---------
Confidence                3445666778899999999888888999998875   488899999999999999999999988632         


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611          401 FADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY  435 (439)
Q Consensus       401 ~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~  435 (439)
                             .++...|...++.++++.++++...+++
T Consensus       168 -------~g~~~~f~~~~~~~~~~~l~~~~~~~~~  195 (475)
T TIGR00924       168 -------YGYHVGFNLAAVGMVIGLLTFFAGRHML  195 (475)
T ss_pred             -------cChHHHHHHHHHHHHHHHHHHHHccccc
Confidence                   1345667777766667766666655444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00895 2A0115 benzoate transport

Probab=98.23  E-value=3e-05  Score=77.12  Aligned_cols=113  Identities=17%  Similarity=0.121  Sum_probs=85.8

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++..+..+..++..++.+.+.+++.           +++.+..+.++.+++..+....                    
T Consensus        54 ~~~~~~~~~~~~~~~~~~~g~l~d~~g-----------~~~~~~~~~~~~~~~~~~~~~~--------------------  102 (398)
T TIGR00895        54 LGFLFSAGLIGMAFGALFFGPLADRIG-----------RKRVLLWSILLFSVFTLLCALA--------------------  102 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHHc--------------------
Confidence            345556666666676777777655433           2345566777777666555543                    


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                        .+.+.+++..++.|++.+...+....++.+..|++.|++++|+......+|..+++.+.+.+.+
T Consensus       103 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  166 (398)
T TIGR00895       103 --TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP  166 (398)
T ss_pred             --cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence              2466677888999999999988888999999999999999999999999999999999887753

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.22  E-value=0.00019  Score=72.40  Aligned_cols=137  Identities=13%  Similarity=0.041  Sum_probs=93.9

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      ++......+...+..|+.+.+.+++           ++++.+.++..+.+++.......                     
T Consensus        51 ~~~~~~~~~~~~~~~~~~G~l~dr~-----------g~r~~l~~~~~~~~~~~~~~~~~---------------------   98 (406)
T PRK15402         51 PTSMTAYLAGGMFLQWLLGPLSDRI-----------GRRPVMLAGVAFFILTCLAILLA---------------------   98 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-----------CChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            3444555666666666666665433           23345566777777666555443                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL  405 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l  405 (439)
                       .+.+.++...++.|++.....+.....+.+..|++.++..+++......+|..+|+.+.+.+.+..      +|     
T Consensus        99 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~------~w-----  166 (406)
T PRK15402         99 -QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL------PW-----  166 (406)
T ss_pred             -ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------Cc-----
Confidence             245667777888999988877777788889999999999999998888899999999888775321      23     


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611          406 NRAHLDYFYWLLAALSAGGLLAFLYF  431 (439)
Q Consensus       406 ~~~~~~~~f~~~~~l~~l~~~i~~~~  431 (439)
                           ...|+..++++++..+..+..
T Consensus       167 -----~~~~~~~~~~~~~~~~~~~~~  187 (406)
T PRK15402        167 -----RGMFVLFAALAALSFFGLWRA  187 (406)
T ss_pred             -----cHHHHHHHHHHHHHHHHHHHh
Confidence                 456666677766665544433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.21  E-value=7.1e-05  Score=72.81  Aligned_cols=136  Identities=18%  Similarity=0.280  Sum_probs=102.5

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .++...+..+...+..|+.+.+.++..+           ++.+.++.++.+++.......                    
T Consensus        36 ~~~~~~~~~~~~~~~~~~~g~~~d~~g~-----------r~~~~~~~~~~~~~~~~~~~~--------------------   84 (352)
T cd06174          36 AGLIVSAFSLGYALGSLLAGYLSDRFGR-----------RRVLLLGLLLFALGSLLLAFA--------------------   84 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhCC-----------chhhHHHHHHHHHHHHHHHHh--------------------
Confidence            4566677777777878887777654332           235677777777777666554                    


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                        .+.+.+.+..++.|++.....+....+..+..|+++|++.++......++|..+++.+.+.+.+.             
T Consensus        85 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------------  149 (352)
T cd06174          85 --SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES-------------  149 (352)
T ss_pred             --ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence              24667788889999999999899989999999999999999999999999999999999987632             


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHH
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFL  429 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~  429 (439)
                         .+....|++.+.+.++..++..
T Consensus       150 ---~~~~~~~~~~~~~~~~~~~~~~  171 (352)
T cd06174         150 ---LGWRWLFLILAILGLLLALLLL  171 (352)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHH
Confidence               1234566666666666655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.20  E-value=0.00018  Score=72.95  Aligned_cols=138  Identities=9%  Similarity=0.042  Sum_probs=96.2

Q ss_pred             hhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCc
Q 013611          247 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIP  326 (439)
Q Consensus       247 ~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (439)
                      +..++..+...+..++.+.+.+    |.       ++++.+..+.++.+++.......                      
T Consensus        55 ~~~s~~~~~~~~~~~~~G~l~d----r~-------Grr~~l~~~~~~~~~~~~~~~~a----------------------  101 (413)
T PRK15403         55 ASVSLYLAGGMALQWLLGPLSD----RI-------GRRPVLITGALIFTLACAATLFT----------------------  101 (413)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHH----Hc-------CchHHHHHHHHHHHHHHHHHHHc----------------------
Confidence            3444555555666666665554    43       23346667777777766655543                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcc
Q 013611          327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLN  406 (439)
Q Consensus       327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~  406 (439)
                      .+.+++++..+++|++++...+.....+.+..|++.++++++++....++|..+|+.+++.+.+.               
T Consensus       102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~---------------  166 (413)
T PRK15403        102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF---------------  166 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence            35777888889999999876666666777888999999999999999999999999988877531               


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          407 RAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       407 ~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                       .+..+.|+..+++.+++.+..++..+
T Consensus       167 -~gw~~~f~~~~~~~~i~~~~~~~~lp  192 (413)
T PRK15403        167 -VHWKVLFAIIAVMGLIAFVGLLLAMP  192 (413)
T ss_pred             -cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             12356777777777777655444333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.20  E-value=2.3e-05  Score=80.70  Aligned_cols=146  Identities=11%  Similarity=-0.092  Sum_probs=99.5

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++.+...+...+..|+.+.+.+++           ++++.+.++.++.+++.+..+.....                 
T Consensus        66 ~g~~~s~~~~~~~~~~~~~G~l~Dr~-----------g~r~~l~~~~~~~~~~~~~~~~~~~~-----------------  117 (467)
T PRK09556         66 LGMIGLGFSITYGVGKTLVGYYADGK-----------NTKQFLPFLLILSAICMLGFGASLGS-----------------  117 (467)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHhhcc-----------CccchHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence            45666666677777777777765433           33445667777777666555543210                 


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                      ...+.+.+++..++.|++++...+.....+.+..|+++||+++|++....++|..+++.+........ .  ...|    
T Consensus       118 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~-~--~~~~----  190 (467)
T PRK09556        118 GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF-F--DGHV----  190 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh-c--cCcc----
Confidence            01357778888899999999988888899999999999999999999999999999988776543210 0  0012    


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFLYF  431 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~~~  431 (439)
                            ...|...++++++.+++.++.
T Consensus       191 ------~~~f~~~g~~~~~~~i~~~~~  211 (467)
T PRK09556        191 ------IGMFIFPSIIALIIGFIGLRY  211 (467)
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHh
Confidence                  334666666666655555444

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.19  E-value=0.00019  Score=73.55  Aligned_cols=144  Identities=14%  Similarity=0.061  Sum_probs=92.8

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+...+...+...+..|+.+.+.+++.           +++.+.++.++.+++.+...+....                 
T Consensus        65 ~g~~~~~~~i~~~~~~~~~G~l~Dr~g-----------~k~~l~~~~~~~~i~~~~~~~~~~~-----------------  116 (452)
T PRK11273         65 LGFALSGISIAYGFSKFIMGSVSDRSN-----------PRVFLPAGLILAAAVMLFMGFVPWA-----------------  116 (452)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhccC-----------CchhHHHHHHHHHHHHHHHHhhhcc-----------------
Confidence            345556666666777777777655333           3345677777777777766654210                 


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhh-hhHHHhhhhccccCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFL-SSILVSIINEATSRDGGDSWFAD  403 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~i-g~~l~~~~~~~~~~~~~~~~~~~  403 (439)
                       ..+.+.+++..++.|++++...+.....+.+..|++.||+++|+++...++|+.+ ++.+.......      .+|   
T Consensus       117 -~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~------~gw---  186 (452)
T PRK11273        117 -TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF------NDW---  186 (452)
T ss_pred             -cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh------ccH---
Confidence             1245566777788999998887766677888899999999999999999998754 44432222210      122   


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          404 NLNRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       404 ~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                             ...|++.++++++..++.++..+
T Consensus       187 -------~~~f~i~~~~~~~~~~l~~~~~~  209 (452)
T PRK11273        187 -------HAALYMPAFAAILVALFAFAMMR  209 (452)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHcc
Confidence                   45666666666665555444433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.18  E-value=0.00019  Score=71.69  Aligned_cols=113  Identities=15%  Similarity=0.117  Sum_probs=89.4

Q ss_pred             cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611          244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV  323 (439)
Q Consensus       244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (439)
                      ..++..+...+...+..|+.+.+.+++.+|           +.+.++.++.++++....+.                   
T Consensus        42 ~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k-----------~~~~~~~~~~~~~~~~~~~~-------------------   91 (381)
T PRK03633         42 QVGVVSSSYFTGNLVGTLLAGYVIKRIGFN-----------RSYYLASLIFAAGCAGLGLM-------------------   91 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHh-------------------
Confidence            356777777778788788877776544433           45677888888777766654                   


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                         .+.+.+++..++.|++.+...+.....+.+..|++.|++++|.+....++|..+|+.+.+.+.
T Consensus        92 ---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633         92 ---VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence               256677788899999999988877777788899999999999999999999999999988775

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.18  E-value=5.5e-06  Score=69.21  Aligned_cols=87  Identities=20%  Similarity=0.237  Sum_probs=76.4

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+.+.+.+.|++.+...|...+...|.+|+++      |++++++.+...++|..+|+.+++++.+..+|++.|.+
T Consensus        49 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  122 (141)
T TIGR00880        49 SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLF  122 (141)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHH
Confidence            356677888999999999999999999999999877      99999999999999999999999999998999999998


Q ss_pred             HHHHHHHHHHHHH
Q 013611          110 PCAFMVAALVLFL  122 (439)
Q Consensus       110 ~~~~~~i~~~l~~  122 (439)
                      .++..++..+..+
T Consensus       123 ~~~~~~~~~~~~~  135 (141)
T TIGR00880       123 LAILALAAFILLA  135 (141)
T ss_pred             HHHHHHHHHHHHh
Confidence            8866666655443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.17  E-value=0.00013  Score=73.29  Aligned_cols=111  Identities=13%  Similarity=0.140  Sum_probs=88.8

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .++..+.+.+...+..|+.+++.+++           ++++.+..|..+.+++.+..++.+                   
T Consensus        46 ~g~~~s~~~~~~~l~~~~~g~l~dr~-----------G~r~~l~~~~~l~~~~~~~~~~a~-------------------   95 (393)
T PRK09705         46 AALLTALPVVTMGGLALAGSWLHQHV-----------SERRSVAISLLLIAVGALMRELYP-------------------   95 (393)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHh-----------CchHHHHHHHHHHHHHHHHHHHCc-------------------
Confidence            46667777777788777777776543           334577889999999988887652                   


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                         +.+.++...++.|+|++...+...+.+.+..| ++|+.++|++......|..+|+.+.+.+.
T Consensus        96 ---~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~  156 (393)
T PRK09705         96 ---QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV  156 (393)
T ss_pred             ---chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               45667788899999999988888788888777 77999999999999999999999888765

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.16  E-value=0.00012  Score=73.18  Aligned_cols=89  Identities=19%  Similarity=0.210  Sum_probs=70.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCccc
Q 013611          328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNR  407 (439)
Q Consensus       328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~  407 (439)
                      +.++++...++.|+|++... +....+.+..|+++|++++++......+|..+++.+...+.+.      .+|       
T Consensus        78 ~~~~l~~~R~l~G~g~~~~~-~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gW-------  143 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPFLL-NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGL-------  143 (368)
T ss_pred             cHHHHHHHHHHHHhHhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cch-------
Confidence            57788899999999999754 4445678899999999999999999999999999888877532      134       


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          408 AHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       408 ~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                         ...|...++++++..++.++..+
T Consensus       144 ---r~~f~~~~~l~~~~~~~~~~~lp  166 (368)
T TIGR00903       144 ---QLLIIPIAAVAAAGIILVLAALP  166 (368)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHcC
Confidence               56777778887777666555544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.14  E-value=2e-05  Score=84.28  Aligned_cols=179  Identities=12%  Similarity=0.042  Sum_probs=111.7

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHH--HHHHHh---------
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIK--RLETAK---------  313 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~--~~~~~~---------  313 (439)
                      .+++.+.+.+...+..++.+++.+    |.       ++++.+.+|.++++++.++.++.+-.  .|+...         
T Consensus        70 ~G~i~s~~~i~~~~~~i~v~~~~~----r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~  138 (633)
T TIGR00805        70 SGLINGSYEIGNLLLIIFVSYFGT----KL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS  138 (633)
T ss_pred             ceeeeehhhHHHHHHHHHHHHhhc----cc-------CcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence            456667777777777766666543    32       34567789999999998888766421  111000         


Q ss_pred             --hhCCCCCCC--------------CCC--cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhh
Q 013611          314 --EYGLIDKPN--------------VTI--PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLG  375 (439)
Q Consensus       314 --~~~~~~~~~--------------~~~--~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~  375 (439)
                        +..+|....              ...  ...+..+++..+++|+|+....+....++.+.+|++.|+.+.|+++....
T Consensus       139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~  218 (633)
T TIGR00805       139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV  218 (633)
T ss_pred             ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence              001121000              000  11345567889999999999998888999999999999999999999999


Q ss_pred             hhhhhhhHHHhhhhccccCC-----CCCCCCCCCccc-chhhHHHHHHHHHHHHHHHHHHHHhcc
Q 013611          376 VGGFLSSILVSIINEATSRD-----GGDSWFADNLNR-AHLDYFYWLLAALSAGGLLAFLYFAKS  434 (439)
Q Consensus       376 iG~~ig~~l~~~~~~~~~~~-----~~~~~~~~~l~~-~~~~~~f~~~~~l~~l~~~i~~~~~~~  434 (439)
                      +|..+|+.+++.+.+....-     +....-+++..+ +..+..|.+.++++++.++.++++.++
T Consensus       219 iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~  283 (633)
T TIGR00805       219 FGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKA  283 (633)
T ss_pred             hhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            99999999998876421000     000000001111 223344777777777776666555443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK03699 putative transporter; Provisional

Probab=98.13  E-value=0.00023  Score=71.49  Aligned_cols=136  Identities=12%  Similarity=0.117  Sum_probs=95.2

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      ++......+...+..++.+++.+++.+           ++.+..+.++.+++..+..+.                     
T Consensus        45 g~~~s~~~~~~~i~~~~~g~l~dr~g~-----------r~~~~~~~~~~~i~~~l~~~~---------------------   92 (394)
T PRK03699         45 SNTFTFLNAGILISIFLNAWLMEIIPL-----------KRQLIFGFALMILAVAGLMFS---------------------   92 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHHHHc---------------------
Confidence            445556666667777777776554333           345666777777776666543                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL  405 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l  405 (439)
                       .+.+++++..++.|++.+...+.....+.+..|++.|+.+++..+...++|+.+++.+.+.+....             
T Consensus        93 -~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------------  158 (394)
T PRK03699         93 -HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS-------------  158 (394)
T ss_pred             -chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------
Confidence             246667778899999999887777788889999999999999999999999999998887664210             


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHH
Q 013611          406 NRAHLDYFYWLLAALSAGGLLAFL  429 (439)
Q Consensus       406 ~~~~~~~~f~~~~~l~~l~~~i~~  429 (439)
                        .+..+.|...+++.++..++.+
T Consensus       159 --~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        159 --IEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHH
Confidence              1225566666666666544433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.13  E-value=7.3e-05  Score=77.55  Aligned_cols=143  Identities=10%  Similarity=0.054  Sum_probs=96.9

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      .++.........+..++.+++.|+    +      ++.++.+.+|.++.+++.+.+.+..                    
T Consensus        53 ~~i~~~~~~~~~~~~~~~G~laDr----~------~G~r~~~~~g~~~~~~g~~~~~~~~--------------------  102 (489)
T PRK10207         53 FITFGAFAALVYGLISIGGYVGDH----L------LGTKRTIVLGAIVLAIGYFMTGMSL--------------------  102 (489)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhhh----c------cchHHHHHHHHHHHHHHHHHHHHhc--------------------
Confidence            344444444555555666776543    1      2344677889998888887777542                    


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh--hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCC
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE--LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD  403 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~--~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~  403 (439)
                       .+...+.+..+++++|+++..++...++.++.|++  .|+.+.+.+.+..++|..+|+.+.+.+.+.            
T Consensus       103 -~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~------------  169 (489)
T PRK10207        103 -LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK------------  169 (489)
T ss_pred             -cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh------------
Confidence             11122446678889999999888889999999877  558899999999999999999999988642            


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611          404 NLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY  435 (439)
Q Consensus       404 ~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~  435 (439)
                          .++.+.|+..++..+++.+.+....+++
T Consensus       170 ----~gw~~~F~i~~i~~~~~~~~~~~~~~~~  197 (489)
T PRK10207        170 ----FGYSVTYNLCGAGLIIALLVYFACRGMV  197 (489)
T ss_pred             ----hChHHHHHHHHHHHHHHHHHHHHcchhh
Confidence                1235567665554444554555544333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.13  E-value=0.00038  Score=70.56  Aligned_cols=115  Identities=10%  Similarity=0.033  Sum_probs=91.4

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++.....+...+..+..+++.+++           +.++.+.+|.++.+++..+......                  
T Consensus        40 ~g~l~s~~~~g~~i~~~~~g~l~~r~-----------G~r~~~~~g~~l~~~g~~l~~~~~~------------------   90 (410)
T TIGR00885        40 AALVQSAFYGGYFIMAIPAAIFMKKL-----------SYKAGILLGLFLYALGAFLFWPAAE------------------   90 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----------CchHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence            46677777888888887777765433           3345778888888888776544321                  


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                       ..+.++++...++.|+|.++..+..+.++.+..|++.+++.+++.+...++|..+|+.+.+.+.
T Consensus        91 -~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        91 -IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             -hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1256677788899999999999888889999999999999999999999999999999988774

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.12  E-value=0.00011  Score=72.94  Aligned_cols=138  Identities=20%  Similarity=0.187  Sum_probs=99.5

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      +++..+..+...+..++.+.+.+    |.       ++++.+..+.++.+++.......                     
T Consensus        29 ~~~~~~~~~~~~~~~~~~g~l~d----~~-------g~~~~~~~~~~~~~i~~~~~~~~---------------------   76 (377)
T PRK11102         29 QMTLSAYILGFAIGQLFYGPMAD----SF-------GRKPVILGGTLVFALAAVACALA---------------------   76 (377)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHh----hc-------CChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            44556666666676777666654    32       23346677877777777766654                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL  405 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l  405 (439)
                       .+.+.++...++.|++.....+.....+.+..|++.|++++++++....+|..+++.+.+.+.+..             
T Consensus        77 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------------  142 (377)
T PRK11102         77 -QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-------------  142 (377)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------
Confidence             245667777889999999888888889999999999999999999999999999999988775321             


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHh
Q 013611          406 NRAHLDYFYWLLAALSAGGLLAFLYFA  432 (439)
Q Consensus       406 ~~~~~~~~f~~~~~l~~l~~~i~~~~~  432 (439)
                         +....|+..++++++..+......
T Consensus       143 ---~~~~~~~~~~~~~~~~~~~~~~~~  166 (377)
T PRK11102        143 ---SWHAIFWVLALAAILAAALVFFFI  166 (377)
T ss_pred             ---ChHHHHHHHHHHHHHHHHHHHHhC
Confidence               224566666666666655544443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.10  E-value=2.7e-05  Score=76.85  Aligned_cols=139  Identities=14%  Similarity=0.112  Sum_probs=99.8

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++..+..+...+..++.+++.+++.+           ++.+.++.++.+++.++..+..                   
T Consensus        32 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~-----------r~~~~~~~~~~~~~~~~~~~~~-------------------   81 (379)
T TIGR00881        32 LGLLLSSFSIAYGISKFVMGSVSDRSNP-----------RVFLPIGLILCAIVNLFFGFST-------------------   81 (379)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHhhCC-----------eehhHHHHHHHHHHHHHHHHhh-------------------
Confidence            3556667777777777777776654333           3456778877877777766552                   


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhH-HHhhhhccccCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSI-LVSIINEATSRDGGDSWFAD  403 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~-l~~~~~~~~~~~~~~~~~~~  403 (439)
                         +.+.+++..++.|++.+...+....++.+..|++.|++++|+++....+|..+++. +...+.+.      .+|   
T Consensus        82 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~---  149 (379)
T TIGR00881        82 ---SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL------YSW---  149 (379)
T ss_pred             ---hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc------CCc---
Confidence               56677788899999999998888899999999999999999999999999999994 44444321      122   


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHHh
Q 013611          404 NLNRAHLDYFYWLLAALSAGGLLAFLYFA  432 (439)
Q Consensus       404 ~l~~~~~~~~f~~~~~l~~l~~~i~~~~~  432 (439)
                             ...|+..++++++..++.+...
T Consensus       150 -------~~~~~~~~~~~~~~~~~~~~~~  171 (379)
T TIGR00881       150 -------HWVFIVPGIIAIIVSLICFLLL  171 (379)
T ss_pred             -------hhHHHHHHHHHHHHHHHHheee
Confidence                   3456666666666555554443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.10  E-value=0.00041  Score=75.09  Aligned_cols=112  Identities=15%  Similarity=0.145  Sum_probs=86.5

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++.++..+..++..++.+++.+++.+|           +.+.++.++.+++.++..+.                    
T Consensus       204 ~g~l~s~~~lG~iiG~li~G~LsDR~GRR-----------~~lii~lil~~i~~ll~afa--------------------  252 (742)
T TIGR01299       204 KGMLGLIVYLGMMVGAFFWGGLADKLGRK-----------QCLLICLSVNGFFAFFSSFV--------------------  252 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHH--------------------
Confidence            35666777777777777777766544333           35566666666666555543                    


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                        .+.+++++..++.|+|.+...+....++.+..|++.||..+++......+|.++++.+...+.
T Consensus       253 --~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       253 --QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              246677888899999999998999999999999999999999999999999999988776654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.10  E-value=5.9e-05  Score=74.46  Aligned_cols=115  Identities=12%  Similarity=0.169  Sum_probs=95.6

Q ss_pred             CCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCh
Q 013611          281 ITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK  360 (439)
Q Consensus       281 ~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~  360 (439)
                      .+++.-+..|+++.++.++++++.+                      +.+.+.+..++.|..-+.-+|+....+.+--|+
T Consensus        91 ~npr~fm~~gLilsai~nil~Gfs~----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr  148 (448)
T COG2271          91 SNPRYFMAFGLILSAIVNILFGFSP----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR  148 (448)
T ss_pred             CCCceeehHHHHHHHHHHHHHhhhh----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc
Confidence            4788889999999999999998763                      677777888888888888889998999999999


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhHHH--hhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          361 ELKSFGLSIYMSVLGVGGFLSSILV--SIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       361 ~~~g~~~gl~~~~~~iG~~ig~~l~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                      ++||+..++|+...|+|+.+.+.+.  +.+...                ++....|++-++++++.+++.++..|
T Consensus       149 ~eRG~~~siWn~shNiGGal~~~~~~la~~~~~----------------~~w~~~f~~pgiiaiival~~~~~~r  207 (448)
T COG2271         149 KERGTWWSIWNTSHNIGGALAPLVALLAFFAFH----------------GGWRAAFYFPGIIAIIVALILLFLLR  207 (448)
T ss_pred             cccCceEEEehhhhhcccchHHHHHHHHHHHhc----------------cchhHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999998  655421                12356788888888888777776655

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.08  E-value=0.00018  Score=72.76  Aligned_cols=119  Identities=13%  Similarity=0.009  Sum_probs=87.0

Q ss_pred             cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611          244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV  323 (439)
Q Consensus       244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (439)
                      ..++......+..++..|+.+.+.+++.+|           +.+.++.++.++++.........                
T Consensus        53 ~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~~~~----------------  105 (417)
T PRK10489         53 QVGLSVTLTGGAMFIGLMVGGVLADRYDRK-----------KLILLARGTCGLGFIGLALNAFL----------------  105 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHhhhcCCc-----------eEEEehHHHHHHHHHHHHHHHHc----------------
Confidence            346677777888888888888876654433           23445666666655544432100                


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                       ...+.+++.+..++.|++.+...+.....+.+.+|++.++++.++.....++|..+|+.+.+.+.+
T Consensus       106 -~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~  171 (417)
T PRK10489        106 -PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA  171 (417)
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence             012456677778888999988888888899999999999999999999999999999999987753

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.07  E-value=0.00023  Score=70.23  Aligned_cols=112  Identities=17%  Similarity=0.092  Sum_probs=83.3

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++..+..+...+..++.+.+.+++.           .++.+.++.++.+++.++..+..                   
T Consensus        39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g-----------~r~~~~~~~~~~~i~~~~~~~~~-------------------   88 (366)
T TIGR00886        39 LGNLVAVPVLAGAVLRIILGFLVDKFG-----------PRYTTTLSLLLLAIPCLWAGLAV-------------------   88 (366)
T ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHhC-----------chHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            456677777777888888887765443           33466778888888877766542                   


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                        .+.+.+++..++.|++..... .....+.+..|++.|+++++++....++|..+++.+.+.+.
T Consensus        89 --~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  150 (366)
T TIGR00886        89 --QSYSVLLLLRLFIGIAGGSFA-SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII  150 (366)
T ss_pred             --hhHHHHHHHHHHHHHhchhhH-hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence              146667778888999876554 45578899999999999999999888888888877776554

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.05  E-value=0.00043  Score=70.09  Aligned_cols=112  Identities=15%  Similarity=0.130  Sum_probs=88.0

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .++...+..+...+..|+.+.+.+++           ++++.+.++.++.+++.....+..                   
T Consensus        55 ~~~~~~~~~~~~~l~~~~~g~l~dr~-----------g~r~~l~~~~~~~~~~~~~~~~~~-------------------  104 (426)
T PRK12307         55 GAFLATAAFIGRPFGGALFGLLADKF-----------GRKPLMMWSIVAYSVGTGLSGLAS-------------------  104 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----------CChHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            45566677777777777777766533           334566778888888877666552                   


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                         +.+.+.+..++.|+|++...+....++.+..|++.|++++|++....++|..+++.+.+.+.
T Consensus       105 ---~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~  166 (426)
T PRK12307        105 ---GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA  166 (426)
T ss_pred             ---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence               46677888899999999988888889999999999999999999999999999988877664

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.05  E-value=0.00012  Score=74.57  Aligned_cols=111  Identities=16%  Similarity=0.070  Sum_probs=86.3

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++..+..+...+..|+.+.+.+++.           +++.+.++.++.+++..+......                  
T Consensus        73 ~~~~~~~~~~~~~i~~~~~g~l~d~~g-----------rr~~~~~~~~~~~~~~~~~~~~~~------------------  123 (481)
T TIGR00879        73 WGLVVSIFLVGGFIGALFAGWLSDRFG-----------RKKSLLIIALLFVIGAILMGLAAF------------------  123 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhhh-----------hHHHHHHHHHHHHHHHHHHHHhcc------------------
Confidence            456667777777777777777665433           334567777777777666654321                  


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHH
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILV  385 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~  385 (439)
                       ..+.+.+++..++.|+|.+...+....++.+..|++.|+.++++++...++|..+++.+.
T Consensus       124 -~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       124 -ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             -ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence             134567788889999999999888889999999999999999999999999999999887

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.04  E-value=1.3e-05  Score=80.62  Aligned_cols=90  Identities=11%  Similarity=0.025  Sum_probs=76.0

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIP  110 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~  110 (439)
                      +...+++.+++.|+|.++..|...+...+.+|+++      |++++++++...++|..+++.+.|++.+..||++.|.+.
T Consensus       301 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  374 (399)
T PRK05122        301 SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAA  374 (399)
T ss_pred             cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            44556777889999999999988888888888765      999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhcCc
Q 013611          111 CAFMVAALVLFLLGTK  126 (439)
Q Consensus       111 ~~~~~i~~~l~~~~~~  126 (439)
                      ++..+++.+..++.++
T Consensus       375 ~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        375 ALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            8877777766554434

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.04  E-value=7.4e-05  Score=76.82  Aligned_cols=140  Identities=16%  Similarity=0.162  Sum_probs=98.4

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      +.+.....+..++..++.+.+.+++.+           ++.+.++.++.+++.++.....                    
T Consensus        79 g~~~s~~~~~~~~~~~~~g~l~dr~g~-----------r~~l~~~~~~~~~~~~~~~~~~--------------------  127 (465)
T TIGR00894        79 GLILSSHFYGQIIIQIPVGYLAGKYVF-----------KWSIGIGMFLSSVISIVIPWAA--------------------  127 (465)
T ss_pred             hHHHHHHHHHHHHHHcchHHHHHHhCc-----------chhhHHHHHHHHHHHHHHHHHH--------------------
Confidence            445555666666666676666554333           3355666666666655544331                    


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL  405 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l  405 (439)
                      ..+.+++++..+++|++++...+....++.+..|+++||+++|+.....++|..+++.+.+.+.+..     .+|     
T Consensus       128 ~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~-----~gw-----  197 (465)
T TIGR00894       128 GGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW-----GGW-----  197 (465)
T ss_pred             HcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCC-----
Confidence            1245667888899999999999999999999999999999999999999999999999998775320     023     


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611          406 NRAHLDYFYWLLAALSAGGLLAFLYF  431 (439)
Q Consensus       406 ~~~~~~~~f~~~~~l~~l~~~i~~~~  431 (439)
                           ...|.+.++++++..++++..
T Consensus       198 -----~~~f~i~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       198 -----PMIFYVFGIVGCAWSLLWFVF  218 (465)
T ss_pred             -----CeehhhhhHHHHHHHHHHHHH
Confidence                 345666666666665555444

>PRK11043 putative transporter; Provisional

Probab=98.03  E-value=0.0007  Score=68.02  Aligned_cols=138  Identities=13%  Similarity=0.051  Sum_probs=95.7

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .++..++..+...+..++.+.+.+++           ++++.+..+.++.+++.....+.                    
T Consensus        43 ~g~~~s~~~~~~~~~~~~~g~l~dr~-----------g~r~~~~~~~~~~~~~~~~~~~~--------------------   91 (401)
T PRK11043         43 VSASLSLFLAGFALGQLLWGPLSDRY-----------GRKPVLLAGLSLFALGSLGMLWV--------------------   91 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHhhc-----------CCcHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            34555666666667767766665433           23345666776776666655543                    


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                        .+.+++++..++.|+|.....+.....+.+..|++.++.+.+..+...++|..+++.+.+.+.+.             
T Consensus        92 --~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-------------  156 (401)
T PRK11043         92 --ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH-------------  156 (401)
T ss_pred             --cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence              25666777788899988877777777888999999999999999988999999999998877532             


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFLYF  431 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~~~  431 (439)
                         .+....|+..+++.++..++.+..
T Consensus       157 ---~g~~~~~~~~~~~~~~~~~~~~~~  180 (401)
T PRK11043        157 ---FGWQAIFATLFAITLLLILPTLRL  180 (401)
T ss_pred             ---CChHHHHHHHHHHHHHHHHHHHHc
Confidence               122456666666666665554433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.02  E-value=0.00014  Score=73.84  Aligned_cols=84  Identities=13%  Similarity=0.130  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHH
Q 013611          336 YLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYW  415 (439)
Q Consensus       336 ~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~  415 (439)
                      .++.|++.-.......+.-.+..-+..+|+++|++.....++..+||.+.......                .++.+.+.
T Consensus       395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~----------------~g~~~v~~  458 (488)
T KOG2325|consen  395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL----------------SGPRPVWI  458 (488)
T ss_pred             hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh----------------cCccHHHH
Confidence            35567777767778878888999999999999999999999999999888877543                23345555


Q ss_pred             HHHHHHHHHHHHHHHHhccC
Q 013611          416 LLAALSAGGLLAFLYFAKSY  435 (439)
Q Consensus       416 ~~~~l~~l~~~i~~~~~~~~  435 (439)
                      ...++.++.........+|.
T Consensus       459 ~~~~~~l~~~~l~~~~~~r~  478 (488)
T KOG2325|consen  459 ILLCLLLVVAALWIVFLKRL  478 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            55555555555555555544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.01  E-value=0.00034  Score=68.88  Aligned_cols=137  Identities=13%  Similarity=0.109  Sum_probs=96.4

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .++..++..+...+..|+.+.+.+++.+|           +.+.++.++.+++.....+.+                   
T Consensus        40 ~g~~~s~~~~~~~~~~~~~G~l~d~~G~r-----------~~~~~~~~~~~~~~~~~~~~~-------------------   89 (377)
T TIGR00890        40 VAIWFTLLLIGLAMSMPVGGLLADKFGPR-----------AVAMLGGILYGLGFTFYAIAD-------------------   89 (377)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHcCcc-----------chhHHhHHHHHHHHHHHHHHH-------------------
Confidence            45667777778888888888876654333           345677888888877666553                   


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                         +.+.+.+...+.|++++...+.....+.+..| ++|+.+++++....++|..+++.+.+.+.+.             
T Consensus        90 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------------  152 (377)
T TIGR00890        90 ---SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL-------------  152 (377)
T ss_pred             ---HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc-------------
Confidence               46667777789999999877666667777777 4699999999999999988766666554321             


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFLYF  431 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~~~  431 (439)
                         .+....|...++++++..+..+..
T Consensus       153 ---~~~~~~f~~~~~~~~~~~~~~~~~  176 (377)
T TIGR00890       153 ---EGVPAAFIYMGIIFLLVIVLGAFL  176 (377)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHHh
Confidence               123556777777776666554444

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.01  E-value=0.0005  Score=69.16  Aligned_cols=110  Identities=12%  Similarity=0.080  Sum_probs=85.9

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++.....+...++.|+.+.+.|++.+           ++.+.++.++.+++.+.+....                   
T Consensus        40 ~~~~~~~~~l~~~l~~~~~G~laDr~gr-----------r~vl~~~~~~~~~~~~~~~~~~-------------------   89 (393)
T PRK11195         40 QPLLQMFFVLAYIVLAPFVGAFADSFPK-----------GRVMFIANGIKLLGCLLMLFGI-------------------   89 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhccCC-----------chhhHHHHHHHHHHHHHHHHHH-------------------
Confidence            4677778888888888888887654433           3455666666666655444321                   


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                         +.   ++..+++|++++...|...+.+.+.+|++.|++++|+.....++|..+||.+++.+.+
T Consensus        90 ---~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~  149 (393)
T PRK11195         90 ---HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD  149 (393)
T ss_pred             ---HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               11   3456789999999999999999999999999999999999999999999999998863

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.01  E-value=0.00071  Score=67.80  Aligned_cols=136  Identities=15%  Similarity=0.090  Sum_probs=94.2

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      ++...+..+..++..|+.+.+.+++.           +++.+.++.++.+++.......                     
T Consensus        46 ~~~~~~~~~~~~~~~~~~G~l~Dr~g-----------rr~~~~~~~~~~~~~~~~~~~~---------------------   93 (394)
T PRK11652         46 QAVMAAYLLTYGLSQLFYGPLSDRVG-----------RRPVILVGMSIFILGTLVALFA---------------------   93 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhcC-----------ChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            45556666677777777777665332           3345666777777666555432                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL  405 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l  405 (439)
                       .+.+++++..++.|++.+...+...++..+..|++.++.+++.+.....+|..+++.+.+.+.+..      +|     
T Consensus        94 -~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~------g~-----  161 (394)
T PRK11652         94 -HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF------GW-----  161 (394)
T ss_pred             -ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------Ch-----
Confidence             246667788889999988877777778888899999999999999999999999999988775321      22     


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHH
Q 013611          406 NRAHLDYFYWLLAALSAGGLLAFLY  430 (439)
Q Consensus       406 ~~~~~~~~f~~~~~l~~l~~~i~~~  430 (439)
                           ...|+..++++++..++...
T Consensus       162 -----~~~f~~~~~~~~~~~~~~~~  181 (394)
T PRK11652        162 -----RACYLFLLLLGAGVTFSMAR  181 (394)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHH
Confidence                 45566666555554444333

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.01  E-value=0.00014  Score=74.29  Aligned_cols=265  Identities=15%  Similarity=0.080  Sum_probs=147.3

Q ss_pred             CCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcCcc
Q 013611           48 GHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKT  127 (439)
Q Consensus        48 ~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~i~~~l~~~~~~~  127 (439)
                      .+.....+.++|...+++      |...+++.....-.|..+||.+++++.+.+|+-..|.++.+..+++.+-.++..++
T Consensus       128 ~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E  201 (463)
T KOG2816|consen  128 AIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE  201 (463)
T ss_pred             hhhhhhhhheeeccchhH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence            355666777888888776      99999999999999999999999999999999999999998888877655444443


Q ss_pred             eeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHH
Q 013611          128 YRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIP  207 (439)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~  207 (439)
                      -..++.+. +.+..           .          ....+...+-....          ...  .....+.|..+.+..
T Consensus       202 sl~~~~~~-~~~~~-----------~----------~~~~~~~~~~~~~~----------~~~--~~~~~~~r~~l~l~l  247 (463)
T KOG2816|consen  202 SLQEKERS-DATLR-----------E----------LTPGSLDSSHVADA----------FQS--LTKVGPDRLLLLLLL  247 (463)
T ss_pred             ccCccccc-ccccc-----------c----------cCCCcccchhhhhh----------hhh--hcccCCCccchHHHH
Confidence            22221110 00000           0          00000000000000          000  000111111111111


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCc-cccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhH
Q 013611          208 IWATCLVYAIVFAQYTTFFTKQGATMDRTITRSI-KIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQR  286 (439)
Q Consensus       208 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~-~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~  286 (439)
                      .  ....++....+.....   ..+.+..++  + ....+.+....++.-.+    .+.+..|.+.+.      +...+.
T Consensus       248 ~--~~~~~~~~~~~~~~~~---~~yl~~~f~--w~~~~~s~~~~~~~~~~~i----~~l~~~~~l~~~------l~~~~~  310 (463)
T KOG2816|consen  248 V--AFLSSLPEAGGASDVL---LLYLKAKFG--WNKKEFSDLLSLVSILGII----SQLLLLPLLSSI------LGEKRL  310 (463)
T ss_pred             H--HHHHHHHHhcCceeEE---EEEEeeecC--cCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH------HhhhhH
Confidence            1  1111111110000000   011122221  1 12223333333333322    223333333332      122236


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHH
Q 013611          287 IGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFG  366 (439)
Q Consensus       287 i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~  366 (439)
                      +.+|++.-.+...+.++..                      ..| +.....+....-....|...+++.++++++.+|.+
T Consensus       311 i~lGl~~~~~~~~~~af~~----------------------~~w-~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v  367 (463)
T KOG2816|consen  311 ISLGLLSEFLQLLLFAFAT----------------------ETW-MMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKV  367 (463)
T ss_pred             hhHHHHHHHHHHHHHHHhc----------------------cch-hhhHHHHHHHhhcchhHHHHhHHHhhcccccccch
Confidence            7788888888888888763                      233 33333444445556788888999999999999999


Q ss_pred             HHHHHHHhhhhhhhhhHHHhhhhccc
Q 013611          367 LSIYMSVLGVGGFLSSILVSIINEAT  392 (439)
Q Consensus       367 ~gl~~~~~~iG~~ig~~l~~~~~~~~  392 (439)
                      +++.....++.+.+++.+.+.+...+
T Consensus       368 ~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  368 FGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            99999999999999999999886554

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.00  E-value=0.00093  Score=67.89  Aligned_cols=109  Identities=12%  Similarity=0.109  Sum_probs=84.6

Q ss_pred             hhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCc
Q 013611          247 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIP  326 (439)
Q Consensus       247 ~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (439)
                      .+...-.....+.....+.+.+++           +.++.+.++++..++..++.++..                     
T Consensus        66 ~I~s~F~ysYal~qIp~GlLaDrl-----------G~K~vL~l~~l~Wsl~t~L~~fa~---------------------  113 (511)
T TIGR00806        66 EIIPVLPYSHLAVLVPVFLLTDYL-----------RYKPVLVLQALSFVCVWLLLLLGT---------------------  113 (511)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh-----------CchHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            333444444555555555554433           344567778877777777777652                     


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                       +.+.+.+..++.|++|+... +...++++..|+++|++++|+++....+|.++++.+++.+.
T Consensus       114 -Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~  174 (511)
T TIGR00806       114 -SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV  174 (511)
T ss_pred             -HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             57778899999999999999 88899999999999999999999999999999999999843

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.99  E-value=0.00036  Score=72.66  Aligned_cols=116  Identities=9%  Similarity=0.080  Sum_probs=82.2

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh-
Q 013611          283 MLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE-  361 (439)
Q Consensus       283 ~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~-  361 (439)
                      .++.+.+|.++.+++..++.+..                     .+.+++.+..++.++|.++..+....++.+..|++ 
T Consensus        87 ~r~~~~~g~~~~~ig~~l~~~~~---------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~  145 (500)
T PRK09584         87 TKRVIMLGAIVLAIGYALVAWSG---------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD  145 (500)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc
Confidence            34567788888888876666431                     12344556678889999998888878888888754 


Q ss_pred             -hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611          362 -LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY  435 (439)
Q Consensus       362 -~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~  435 (439)
                       .++.++++++...++|..+|+.+.+.+.+.                .++.+.|...++..+++.+.++...+.+
T Consensus       146 ~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~----------------~g~~~~F~i~~i~~~i~~i~~~~~~~~~  204 (500)
T PRK09584        146 PRLDGAFTMYYMSINIGSFFSMLATPWLAAK----------------YGWSVAFALSVVGMLITVVNFAFCQRWV  204 (500)
T ss_pred             hhhhhcchHHHHHHHHHHHHHHHHHHHHHHh----------------hCHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence             345678899999999999999999988642                2345667776666666666665554443

>PRK12382 putative transporter; Provisional

Probab=97.99  E-value=0.00026  Score=70.87  Aligned_cols=120  Identities=10%  Similarity=-0.037  Sum_probs=86.0

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+.+.....+...+..|+.+.+.|++.+|           +.+.+|.++.+++..........        .     . .
T Consensus        53 ~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~--------~-----~-~  107 (392)
T PRK12382         53 VGIAVGIQFLATVLTRGYAGRLADQYGAK-----------RSALQGMLACGLAGLAYLLAAIL--------P-----V-S  107 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHhhcch-----------HHHHHHHHHHHHHHHHHHhhhcc--------c-----c-c
Confidence            45667777888888888888887654433           35566666555543322211100        0     0 0


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      ...+.+++++..+++|+|+....+....++.+..|++.|++++|.+....++|..+|+.+++.+.
T Consensus       108 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~  172 (392)
T PRK12382        108 APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH  172 (392)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            01256677888899999999988888788899999999999999999999999999999988775

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.98  E-value=0.0015  Score=66.92  Aligned_cols=129  Identities=15%  Similarity=0.022  Sum_probs=80.9

Q ss_pred             CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611          282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE  361 (439)
Q Consensus       282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~  361 (439)
                      +.++.+.++.++.++..+..++...+                 ...+.+.+++..++.|++ +..++.....+.+..|++
T Consensus        98 G~R~v~~~~~ll~~i~~~~~~~a~~~-----------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~  159 (462)
T PRK15034         98 GGRRWTVFSTAILIIPCVWLGIAVQN-----------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA  159 (462)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHcc-----------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh
Confidence            45567778888887777766654210                 013677788888999998 556677778999999999


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhHHHhhhh-----ccccCCCCCCCCCCCc--c-cchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          362 LKSFGLSIYMSVLGVGGFLSSILVSIIN-----EATSRDGGDSWFADNL--N-RAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       362 ~~g~~~gl~~~~~~iG~~ig~~l~~~~~-----~~~~~~~~~~~~~~~l--~-~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                      +||+++|++....++|..+++.+...+.     ...      +|-+...  + ..+....+++...+.++.++++++..+
T Consensus       160 ~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~------G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~  233 (462)
T PRK15034        160 KQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFL------GVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMN  233 (462)
T ss_pred             HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh------ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999997666666665555444322     111      1111000  0 112344555666666677766666544


Q ss_pred             c
Q 013611          434 S  434 (439)
Q Consensus       434 ~  434 (439)
                      .
T Consensus       234 ~  234 (462)
T PRK15034        234 D  234 (462)
T ss_pred             C
Confidence            3

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.96  E-value=0.0011  Score=68.65  Aligned_cols=111  Identities=14%  Similarity=0.122  Sum_probs=85.6

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      +++.....+..++..++.+.+.+++.           +++.+.++.++.+++.+...+.                     
T Consensus        58 ~~~~~~~~~~~~~~~~~~g~l~dr~g-----------~r~~~~~~~~~~~~~~~~~~~~---------------------  105 (496)
T PRK03893         58 ASLISAAFISRWFGGLLLGAMGDRYG-----------RRLAMVISIVLFSVGTLACGFA---------------------  105 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            44555566666666667666655332           3345667777777777666654                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                       .+.+++.+..++.|++.+...+....++.+..|++.|+.++|++....++|+.+++.+.+.+.
T Consensus       106 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  168 (496)
T PRK03893        106 -PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV  168 (496)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             256677888899999999988888889999999999999999999999999999999988775

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.96  E-value=0.00078  Score=69.66  Aligned_cols=144  Identities=11%  Similarity=0.037  Sum_probs=88.6

Q ss_pred             hhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCc
Q 013611          247 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIP  326 (439)
Q Consensus       247 ~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (439)
                      +......+...+..++.+.+.+    |+       ++++.+.++.++.+++.++.++.                      
T Consensus        75 ~~~~~~~~~~~~~~~~~G~l~d----r~-------G~r~~~~~~~~~~~~~~~~~~~~----------------------  121 (476)
T PLN00028         75 NAGIASVSGSIFSRLAMGPVCD----LY-------GPRYGSAFLLMLTAPAVFCMSLV----------------------  121 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----Hh-------CChHHHHHHHHHHHHHHHHHHHh----------------------
Confidence            3344444444455555555554    43       23345566777777776655544                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcc
Q 013611          327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLN  406 (439)
Q Consensus       327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~  406 (439)
                      .+.+.+.+..++.|+++....+ ...++.+..|++.||+++|+++...++|..+++.+.+.+........    .   .+
T Consensus       122 ~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~----~---~~  193 (476)
T PLN00028        122 SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG----A---PS  193 (476)
T ss_pred             cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C---cc
Confidence            2455566667888999886544 44578899999999999999998888888888777665432110000    0   00


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHH
Q 013611          407 RAHLDYFYWLLAALSAGGLLAFLYF  431 (439)
Q Consensus       407 ~~~~~~~f~~~~~l~~l~~~i~~~~  431 (439)
                      ..+....|.+.++++++..++.+++
T Consensus       194 ~~gWr~~f~i~g~l~l~~~l~~~~~  218 (476)
T PLN00028        194 FTAWRIAFFVPGLLHIIMGILVLTL  218 (476)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            0123667877787777766555544

>TIGR00897 2A0118 polyol permease family

Probab=97.95  E-value=0.00091  Score=67.43  Aligned_cols=117  Identities=15%  Similarity=0.092  Sum_probs=82.3

Q ss_pred             cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611          244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV  323 (439)
Q Consensus       244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (439)
                      ..++......+...+..|+.+++.+++.           +++.+..+..+.+++.........                 
T Consensus        49 ~~g~~~~~~~~~~~i~~~~~g~l~dr~g-----------~k~~l~~~~~~~~~~~~~~~~~~~-----------------  100 (402)
T TIGR00897        49 QSASAFTLYGIAAAISAWISGVVAEIIG-----------PLKTMMIGLLLWCVGHAAFIVFGL-----------------  100 (402)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHcC-----------cHHHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence            3456667777777777788777765433           334566777777776544332210                 


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhh-hhhhHHHhhhh
Q 013611          324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGG-FLSSILVSIIN  389 (439)
Q Consensus       324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~-~ig~~l~~~~~  389 (439)
                       ...+.+.+....++.|+|.....+.....+.+..|+++|++++|++....++|. .+|+.+.+.+.
T Consensus       101 -~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~  166 (402)
T TIGR00897       101 -GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI  166 (402)
T ss_pred             -cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             012455566777888998887777777788889999999999999999999996 57887776654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.92  E-value=0.00066  Score=67.19  Aligned_cols=140  Identities=9%  Similarity=-0.072  Sum_probs=87.7

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHh-HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIG-AGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV  323 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~-iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (439)
                      .+++.....+..++..|+.+.+.++..+           ++.+. .+.++.+++..+....                   
T Consensus        35 ~g~~~~~~~~~~~~~~~~~g~l~Dr~g~-----------r~~~~~~~~~~~~~~~~~~~~~-------------------   84 (375)
T TIGR00899        35 IGLFYTGSAIVGIAVSQLLATRSDYQGD-----------RKGLILFCCLLAALACLLFAWN-------------------   84 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCC-----------chHHHHHHHHHHHHHHHHHHhc-------------------
Confidence            4556666666667777777776553322           23333 3444444444444432                   


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHH--HHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCC
Q 013611          324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFG--LSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWF  401 (439)
Q Consensus       324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~--~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~  401 (439)
                         .+.+++++..++.+.+.....|...+.+.+..|++.|+..  .+......++|..+|+.+.+.+.+.          
T Consensus        85 ---~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~----------  151 (375)
T TIGR00899        85 ---RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG----------  151 (375)
T ss_pred             ---chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh----------
Confidence               2455555556666766666677777777788887777654  6777888889999999998877532          


Q ss_pred             CCCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          402 ADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       402 ~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                            .+.+..|+..+...++..++.++..+
T Consensus       152 ------~~~~~~f~~~~~~~~~~~~~~~~~~~  177 (375)
T TIGR00899       152 ------FGFTVMFLTAALAFVLCGVLVWLFLP  177 (375)
T ss_pred             ------cccHHHHHHHHHHHHHHHHHHHHhCC
Confidence                  12355677777776766666555444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.91  E-value=0.0006  Score=70.06  Aligned_cols=137  Identities=15%  Similarity=0.036  Sum_probs=91.1

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .++..++..+...+..|+.+.+.+++.           .++.+..+.++.+++.++.++..                   
T Consensus        56 ~~~~~s~~~~~~~~~~~~~G~l~dr~g-----------~r~~l~~~~~~~~~~~~~~~~~~-------------------  105 (455)
T TIGR00892        56 TAWISSIMLAVLYAGGPISSILVNRFG-----------CRPVVIAGGLLASLGMILASFSS-------------------  105 (455)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHcC-----------chHHHHhhHHHHHHHHHHHHHhh-------------------
Confidence            345555555556666777776655332           23456677777777776665542                   


Q ss_pred             CcchHHHHHH-HHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCC
Q 013611          325 IPTSVWWLIP-QYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD  403 (439)
Q Consensus       325 ~~~~~~~~i~-~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~  403 (439)
                         +.+.+.. ..++.|++.+...++....+.+..| +.|++++|+++....+|..+++.+.+.+.+.            
T Consensus       106 ---~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~------------  169 (455)
T TIGR00892       106 ---NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES------------  169 (455)
T ss_pred             ---hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH------------
Confidence               3444433 3467788888765555566667776 7899999999999999999999998877532            


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611          404 NLNRAHLDYFYWLLAALSAGGLLAFLYF  431 (439)
Q Consensus       404 ~l~~~~~~~~f~~~~~l~~l~~~i~~~~  431 (439)
                          .++...|+..++++++..+..++.
T Consensus       170 ----~gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       170 ----FGWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             ----hChHHHHHHHHHHHHHHHHHHHHh
Confidence                123567888887777665554443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.90  E-value=0.00045  Score=71.30  Aligned_cols=142  Identities=15%  Similarity=0.059  Sum_probs=93.2

Q ss_pred             hhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCc
Q 013611          247 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIP  326 (439)
Q Consensus       247 ~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (439)
                      .+.........+..++.+++.|++.          +.++.+.+|.++.+++.+++...+                     
T Consensus        49 ~i~~~~~~~~~l~~ligG~LaDRil----------Grrr~iliG~il~~lg~lll~~~~---------------------   97 (493)
T PRK15462         49 ELFSAYCSLVYVTPILGGFLADKVL----------GNRMAVMLGALLMAIGHVVLGASE---------------------   97 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcc----------CcHHHHHHHHHHHHHHHHHHHHhh---------------------
Confidence            3444444454555556677665442          233466788888888876554321                     


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh--hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE--LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~--~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                      .+..+..+...+..+|.++..++..+++.+..|++  .|.++.++++...++|+.++|.+.+.+.+.             
T Consensus        98 ~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~-------------  164 (493)
T PRK15462         98 IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE-------------  164 (493)
T ss_pred             cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh-------------
Confidence            11122334444556777777777778888888875  799999999999999999999999988531             


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFLYFAKSY  435 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~  435 (439)
                         .++.+.|...++.++++.+.++...|++
T Consensus       165 ---~Gw~~~F~iaaigm~l~li~~~~~~~~l  192 (493)
T PRK15462        165 ---YSWAMGFGLAAVGMIAGLVIFLCGNRHF  192 (493)
T ss_pred             ---hChHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence               2335667776666777777766555554

>TIGR00889 2A0110 nucleoside transporter

Probab=97.88  E-value=3e-05  Score=78.79  Aligned_cols=86  Identities=10%  Similarity=0.192  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHH-HHHHHHHHHHHHHHHHhhhc------ccch
Q 013611           32 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWY-FGISFGANSTILVVIYIQDN------LNWA  104 (439)
Q Consensus        32 ~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y-~~~nlG~~ig~~l~g~l~~~------~g~~  104 (439)
                      .+.+++..++.|++.+...|+...++.+++|+++      |++++++.+ +..++|.++||.++|++.+.      +||+
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~  381 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ  381 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence            4567778899999999999999999999999876      999999997 56789999999999999987      4699


Q ss_pred             hhhHHHHHHHHHHHHHHHh
Q 013611          105 LGFGIPCAFMVAALVLFLL  123 (439)
Q Consensus       105 ~~F~i~~~~~~i~~~l~~~  123 (439)
                      ..|.+.++..++..+++++
T Consensus       382 ~~f~~~~~~~~i~~~l~~~  400 (418)
T TIGR00889       382 TMWLFFAGYIAILAVLFMI  400 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999887776666655444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00898 2A0119 cation transport protein

Probab=97.84  E-value=0.00029  Score=73.19  Aligned_cols=133  Identities=14%  Similarity=0.110  Sum_probs=97.9

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .++..++..+..++..++.+.+.+++.+           ++.+.++.++.+++.+...+.                    
T Consensus       129 ~~~~~s~~~~g~~~g~~~~g~l~Dr~Gr-----------r~~~~~~~~~~~i~~~~~~~~--------------------  177 (505)
T TIGR00898       129 VDLTQSCFFVGVLLGSFVFGYLSDRFGR-----------KKVLLLSTLVTAVSGVLTAFS--------------------  177 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHhhhhccc-----------hHHHHHHHHHHHHHHHHHHHc--------------------
Confidence            3566777777778877777776654333           234566766666666555543                    


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                        .+.+.+++..++.|++.+...+....++.+..|++.|+.++++......+|..+++.+...+.         +|    
T Consensus       178 --~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w----  242 (505)
T TIGR00898       178 --PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---------DW----  242 (505)
T ss_pred             --ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------HH----
Confidence              257778888999999999998888899999999999999999999999999999888766553         13    


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHH
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFL  429 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~  429 (439)
                            ...|+..++.+++..+..+
T Consensus       243 ------r~~~~~~~i~~~~~~~~~~  261 (505)
T TIGR00898       243 ------RWLQLAVSLPTFLFFLLSW  261 (505)
T ss_pred             ------HHHHHHHHHHHHHHHHHHH
Confidence                  4566666666666655553

>PRK10133 L-fucose transporter; Provisional

Probab=97.83  E-value=0.0027  Score=64.90  Aligned_cols=115  Identities=10%  Similarity=0.048  Sum_probs=86.8

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++.....+...+..++.+.+.+++.           .++.+.+|+++.+++.++......                  
T Consensus        63 ~gl~~~~~~~g~~i~~~~~g~l~dr~G-----------~r~~l~~g~~~~~~~~~l~~~~~~------------------  113 (438)
T PRK10133         63 AGLIQSAFYFGYFIIPIPAGILMKKLS-----------YKAGIITGLFLYALGAALFWPAAE------------------  113 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence            455666777777777777777655433           345678888888888766532210                  


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                       ..+.+.+++..+++|+|.+...+..+.++.+..|++.+...+++++..+.+|..+|+.+++.+.
T Consensus       114 -a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        114 -IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             -cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1356778888999999999999888888888878887777899999999999999998877553

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.81  E-value=0.00056  Score=71.18  Aligned_cols=117  Identities=13%  Similarity=0.061  Sum_probs=84.3

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      +++.....+..++..++.+++.+++.||           +.+.++.++..++..+.+....         +       ..
T Consensus        59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr-----------~~~~~~~~~~~v~~~~~~~~~~---------~-------~~  111 (502)
T TIGR00887        59 AAVNGSASIGTLAGQLFFGWLADKLGRK-----------RVYGMELIIMIIATVASGLSPG---------S-------SP  111 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccH-----------HHHHHHHHHHHHHHHHHHHccC---------c-------cc
Confidence            3455566666666666666665544332           3456666667766655554310         0       00


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      ..+.+++++..++.|++++...+....++.+..|++.||+++++......+|..+++.+...+.
T Consensus       112 ~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~  175 (502)
T TIGR00887       112 KSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL  175 (502)
T ss_pred             chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1135678888999999999998888899999999999999999999999999999998877654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.81  E-value=0.0012  Score=70.60  Aligned_cols=251  Identities=8%  Similarity=-0.051  Sum_probs=167.2

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-chh----
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN-WAL----  105 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g-~~~----  105 (439)
                      ........++.+.++.++.+++..++.+++.+..++   +++++.+++|++..+.+.+. .+++..+..... +..    
T Consensus        81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~fg~  156 (654)
T TIGR00926        81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCFGC  156 (654)
T ss_pred             cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccc
Confidence            356667788889999999999999999999988763   46678999999999988775 555555554443 222    


Q ss_pred             --hh-HHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCC
Q 013611          106 --GF-GIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPD  182 (439)
Q Consensus       106 --~F-~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (439)
                        .| ...++.+++.++.++.....++..++++  .+...+.++...+.....          +     +.....  .. 
T Consensus       157 ~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~--p~gs~l~~v~~vi~~a~~----------~-----~~~~~~--~~-  216 (654)
T TIGR00926       157 QDCYPLAFGVPAILMILALIVFMAGSKMYKKKP--PKGNIVSKVIKCIVTALR----------K-----RFSTRS--EH-  216 (654)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhccccCCCC--CCccHHHHHHHHHHHHHH----------H-----hhccCC--cc-
Confidence              13 3566666666667777666555554432  433334454433322210          0     000000  00 


Q ss_pred             CCCCCCCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHH
Q 013611          183 VSLEDGKLC--TLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFI  260 (439)
Q Consensus       183 ~~~~~~~~~--~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~  260 (439)
                       ....|...  .+..+++.+...+++.++...+.+++.+.+.....+.+..++++..+ .+...+...+.++.+-.++.+
T Consensus       217 -~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~l~g~~ip~~~lq~~n~L~II  294 (654)
T TIGR00926       217 -WPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-DVGGFEIQPDQMQVVNPLLIL  294 (654)
T ss_pred             -cchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-ccCCEecCHHHHHHHHHHHHH
Confidence             00111111  12223457788899999999999999999988888888888877654 333334457789999999999


Q ss_pred             HhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013611          261 PIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLE  310 (439)
Q Consensus       261 pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~  310 (439)
                      ++...+.+++.++..++   ..+++++.-+.+.+.++.+.+..++....+
T Consensus       295 il~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~  341 (654)
T TIGR00926       295 IFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLK  341 (654)
T ss_pred             HhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888999887433   346777888999898888888888775544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.80  E-value=0.0023  Score=66.84  Aligned_cols=121  Identities=17%  Similarity=0.202  Sum_probs=91.7

Q ss_pred             cccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 013611          242 KIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKP  321 (439)
Q Consensus       242 ~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  321 (439)
                      ....+.++....+..+++.|+.+.+.|++-           +++.+...-++.++....+.+...        .|     
T Consensus        44 ~~~valv~~a~~LP~~Llsl~aG~laDr~d-----------rrrili~~~~~~~~~~~~L~~l~~--------~~-----   99 (524)
T PF05977_consen   44 PLMVALVQAASTLPILLLSLFAGALADRFD-----------RRRILILSQLLRALVALLLAVLAF--------FG-----   99 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----------chHHHHHHHHHHHHHHHHHHHHHH--------hC-----
Confidence            344567778888888888888888765433           334455555554444444433322        11     


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          322 NVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       322 ~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                          ..++|.+++..++.|++..+..|+.++.+-+.+|+++-..+.++.....++...+||.++|.+..
T Consensus       100 ----~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva  164 (524)
T PF05977_consen  100 ----LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA  164 (524)
T ss_pred             ----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence                25678788888999999999999999999999999999999999999999999999999998753

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.77  E-value=0.00056  Score=69.53  Aligned_cols=148  Identities=14%  Similarity=0.197  Sum_probs=104.0

Q ss_pred             cccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 013611          242 KIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKP  321 (439)
Q Consensus       242 ~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  321 (439)
                      .+--|....++-..-+.+-++..+++.++           +.-+.+.+|+.+.++=+..+..++                
T Consensus       405 ~~LfGv~~a~~~~gEI~~~ffs~klI~ki-----------GHv~v~~lgLa~~~~Rf~~~S~L~----------------  457 (618)
T KOG3762|consen  405 KTLFGVVSALCHAGEILFYFFSFKLIEKI-----------GHVNVMYLGLACNVGRFLYYSYLQ----------------  457 (618)
T ss_pred             ceeeeehhhhhccchHHHHHHHHHHHHHh-----------cccceeeehhhHHHHHHHHHHHhc----------------
Confidence            34445566666666666666666554333           233455677777766666666553                


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHh-hhhhhhhhHHHhhhhccccCCCCCCC
Q 013611          322 NVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVL-GVGGFLSSILVSIINEATSRDGGDSW  400 (439)
Q Consensus       322 ~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~-~iG~~ig~~l~~~~~~~~~~~~~~~~  400 (439)
                            +.|..++-.+++|+-..+++.+.-+++...+|++++.+++|+....- ++|-.+|..++|.+...         
T Consensus       458 ------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~---------  522 (618)
T KOG3762|consen  458 ------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER---------  522 (618)
T ss_pred             ------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee---------
Confidence                  67777788899999999999999999999999999999999887554 77777777777777542         


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCccC
Q 013611          401 FADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNRE  438 (439)
Q Consensus       401 ~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~~  438 (439)
                             .+....|...++.+++..+++..+-+..+++
T Consensus       523 -------fg~~ttf~~~giAcl~~l~~~~~iq~~l~~~  553 (618)
T KOG3762|consen  523 -------FGARTTFRIFGIACLVTLALFISIQLLLKRR  553 (618)
T ss_pred             -------ehhHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence                   2235567777777777777776666555544

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.75  E-value=0.0017  Score=66.85  Aligned_cols=171  Identities=15%  Similarity=0.136  Sum_probs=106.6

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhH-HhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-CC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQR-IGAGMLLSSISMVVAALVEIKRLETAKEYGLIDK-PN  322 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~-i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~  322 (439)
                      .+.+..+.++..++..|+.+.+.|+...|++       +++. +..|.+..++++.++++.....    .-.+  +. ++
T Consensus        41 ~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~G-------RRrp~il~g~~~~~~~l~ll~~~~~~~----~~~~--~~~~~  107 (477)
T TIGR01301        41 ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFG-------RRRPFIAAGAALVAFAVILIGFAADIG----HLFG--DNLDK  107 (477)
T ss_pred             HHHHHHHHHHHHHHHHhHeeehhcCCCCCCC-------ChHHHHHHHHHHHHHHHHHHHhCchhh----hhcc--ccccc
Confidence            4567788899999999999999886555542       2233 3445666777766666543110    0000  00 00


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhH--HHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCC
Q 013611          323 VTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELK--SFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSW  400 (439)
Q Consensus       323 ~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~--g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~  400 (439)
                      .......+..+....+..++.....++..+++.+.+|++.|  +.+.+....+.++|+.+|..+++......       +
T Consensus       108 ~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~-------~  180 (477)
T TIGR01301       108 KTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYK-------I  180 (477)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------h
Confidence            00112234445555566667777777778999999998865  67999999999999999999887642110       1


Q ss_pred             CCC------CcccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611          401 FAD------NLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY  435 (439)
Q Consensus       401 ~~~------~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~  435 (439)
                      ++-      ..-..++...|.+-+++.+++.++-.+..|.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~  221 (477)
T TIGR01301       181 FPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN  221 (477)
T ss_pred             cccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence            110      00012556678777777777777766666654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.74  E-value=0.0012  Score=75.61  Aligned_cols=115  Identities=12%  Similarity=0.034  Sum_probs=84.1

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      +++..+..+..+++.|+.+.+.+++.+           ++.+.++.++.+++.++..+...                   
T Consensus        50 ~~~~~~~~l~~~l~~~~~G~l~Dr~gr-----------k~~l~~~~~~~~~~~~~~~~~~~-------------------   99 (1146)
T PRK08633         50 AIVNALFLLPFLLLSSPAGFLADKFSK-----------NRVIRIVKLFEVGLTLLIVLAYY-------------------   99 (1146)
T ss_pred             HHHHHHHHHHHHHHhhhHhhhcccccH-----------HHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            455566666667777777776554332           23444555544444433333211                   


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                      ..+++++++..++.|++.++..+...+++.+.+|++.|+.++|+.....++|..+|+.+++.+.+
T Consensus       100 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633        100 LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            12467788888999999999999999999999999999999999999999999999999998764

>PTZ00207 hypothetical protein; Provisional

Probab=97.74  E-value=0.0026  Score=67.08  Aligned_cols=118  Identities=13%  Similarity=0.087  Sum_probs=84.8

Q ss_pred             CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611          282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE  361 (439)
Q Consensus       282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~  361 (439)
                      ++++.+.+|.++.+++.++.++...         +.       ...+.+.+.+..++.|+|+....+.....+.+..| +
T Consensus        89 G~R~vllig~ll~~iG~ll~ala~~---------~~-------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~  151 (591)
T PTZ00207         89 GPRPIFVLSMTVFCLGTLLFALTFQ---------EV-------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-S  151 (591)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhc---------cc-------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-h
Confidence            4556788999999999888776521         00       01367778888899999999887777778888887 6


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          362 LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       362 ~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                      .||+++|+.....++|+++.+.+...+..                 .+...+|++++++.++..++.+.+.+
T Consensus       152 ~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----------------~~~~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        152 NRGAVVAIMKTFTGLGSAILGSIQLAFFS-----------------DNTSAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence            78999999999999999864444443321                 11245677777777777666666544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.72  E-value=0.0012  Score=68.01  Aligned_cols=155  Identities=15%  Similarity=0.049  Sum_probs=98.0

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      ++..++..+...+..++.+.+.+++.+           ++.+.++.++.+++.+..++.+....       ....+   .
T Consensus        58 ~~~~s~~~ig~~~~~~~~G~l~dr~Gr-----------r~~~~~~~~l~~i~~~~~~~~~~~~~-------~~~~~---~  116 (479)
T PRK10077         58 GFCVASALIGCIIGGALGGYCSNRFGR-----------RDSLKIAAVLFFISALGSAWPEFGFT-------SIGPD---N  116 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHHHHHHHhhccccc-------ccccc---c
Confidence            456666777777777777776654433           34566777777666655554321000       00000   0


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL  405 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l  405 (439)
                      ....+.+++..++.|++.+...+....++.+..|++.||.++|++.....+|..+++.+...+.....    ..+    +
T Consensus       117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~----~~~----~  188 (479)
T PRK10077        117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGD----ASW----L  188 (479)
T ss_pred             hhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCc----ccc----c
Confidence            12345567788999999999999998999999999999999999999999999988766555532110    001    1


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHH
Q 013611          406 NRAHLDYFYWLLAALSAGGLLAFL  429 (439)
Q Consensus       406 ~~~~~~~~f~~~~~l~~l~~~i~~  429 (439)
                      +..+..+.|++.++.+++..+..+
T Consensus       189 ~~~gWr~~f~~~~~~~~~~~~~~~  212 (479)
T PRK10077        189 NTDGWRYMFASEAIPALLFLMLLY  212 (479)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHH
Confidence            112335566666666666544433

>TIGR00901 2A0125 AmpG-related permease

Probab=97.66  E-value=0.0018  Score=63.93  Aligned_cols=123  Identities=16%  Similarity=0.190  Sum_probs=80.3

Q ss_pred             CchhH-HhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCh
Q 013611          282 TMLQR-IGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK  360 (439)
Q Consensus       282 ~~~~~-i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~  360 (439)
                      .+++. +..+.++.++++..+.+...                   ..+.+++....++.+++-....++..+++.+.+|+
T Consensus        54 Grr~~~l~~~~~~~~~~~~~l~~~~~-------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~  114 (356)
T TIGR00901        54 GRRRSWLVLTQVLLLSLLLILSFLVP-------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSD  114 (356)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCc-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            33444 35566666666555554321                   12455566666677777777788888999999999


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611          361 ELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYF  431 (439)
Q Consensus       361 ~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~  431 (439)
                      +.|+.+.|+.....++|..+++.+.+.+......++        ..+......|+..++..+++.++.++.
T Consensus       115 ~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~--------~~~~~wr~~f~i~ai~~l~~~~~~~~~  177 (356)
T TIGR00901       115 EELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT--------GLITLWGYIFFWTALLILPGLLVTLFL  177 (356)
T ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--------ccccccHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999887753321110        011123556766666666655444433

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.66  E-value=0.0067  Score=63.00  Aligned_cols=133  Identities=19%  Similarity=0.297  Sum_probs=91.1

Q ss_pred             hhhhhhhhhcccccCCCCCCCchh-HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHH
Q 013611          262 IYDCIFVPITRYFTQNPSGITMLQ-RIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCG  340 (439)
Q Consensus       262 l~~~~~~~~~~k~~~~~~~~~~~~-~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g  340 (439)
                      +...++.|+.+|+.. |+ .+.++ .+.++.++.+++...+++...                   ..+.+++.+..++.+
T Consensus        60 ~~~~l~gpl~Dr~~~-~~-~Grrr~~ll~~~i~~~~~~~~~a~~~~-------------------~~~l~~l~~~~~l~~  118 (491)
T PRK11010         60 VFKFLWSPLMDRYTP-PF-LGRRRGWLLATQLLLLVAIAAMGFLEP-------------------GTQLRWLAALAVVIA  118 (491)
T ss_pred             HHHHHHHHHHHcccc-cC-CCCchHHHHHHHHHHHHHHHHHHHcCC-------------------cchHHHHHHHHHHHH
Confidence            445556666666411 11 23333 355666666666666655421                   135677777788888


Q ss_pred             HHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHH
Q 013611          341 IADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAAL  420 (439)
Q Consensus       341 ige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l  420 (439)
                      ++.....+...+++.+..|+++||.++|+......+|..+++.+...+.+..               .+....|+..+++
T Consensus       119 ~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~---------------~GWr~~f~i~a~l  183 (491)
T PRK11010        119 FCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRY---------------LGWQGMYWLMAAL  183 (491)
T ss_pred             HHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------cCHHHHHHHHHHH
Confidence            8888888888899999999999999999999999999999998887775310               1235677777777


Q ss_pred             HHHHHHHHHH
Q 013611          421 SAGGLLAFLY  430 (439)
Q Consensus       421 ~~l~~~i~~~  430 (439)
                      +++..+..++
T Consensus       184 ~ll~~l~~~~  193 (491)
T PRK11010        184 LIPCIIATLL  193 (491)
T ss_pred             HHHHHHHHHh
Confidence            7776555443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.65  E-value=0.0015  Score=74.84  Aligned_cols=63  Identities=16%  Similarity=0.043  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                      ++|++++..+++|+++.+..|...+.+.+..|++.++.++|+.+...++|..+|+.+++.+..
T Consensus       107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~  169 (1140)
T PRK06814        107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI  169 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            678888999999999999999999999999999999999999999999999999999998864

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.64  E-value=0.001  Score=68.27  Aligned_cols=117  Identities=11%  Similarity=0.205  Sum_probs=97.8

Q ss_pred             CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611          282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE  361 (439)
Q Consensus       282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~  361 (439)
                      +.++.+..+.++.+++-++...+..                    .+.+.+++..+++|++++...|....+..+-+|++
T Consensus       101 G~r~v~~~~~~~sa~~t~l~P~aa~--------------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~  160 (466)
T KOG2532|consen  101 GARRVFFISGLISALLTLLTPLAAS--------------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN  160 (466)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHH--------------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH
Confidence            5566788898888888888887752                    35556788899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          362 LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       362 ~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                      +|++..++......+|..++-.++|.+.+..     .+|          ...|.+.|+++++-.++++.+.+
T Consensus       161 Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~-----~GW----------~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  161 ERSTFIAILTAGSQLGTIITMPVSGLLCESS-----LGW----------PSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHhccC-----CCC----------chHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998999887531     245          56788888888888888777655

>TIGR00896 CynX cyanate transporter

Probab=97.62  E-value=0.0021  Score=63.43  Aligned_cols=110  Identities=15%  Similarity=0.178  Sum_probs=80.3

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .++...++.+...+..++.+++.+++.+           ++.+.+|.++.+++.... ..                    
T Consensus        37 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~-----------r~~~~~~~~~~~~~~~~~-~~--------------------   84 (355)
T TIGR00896        37 AGLLTALPVLCFAVLAPLAPWLARRFGE-----------ERSVAAGLLLIAAGILIR-SA--------------------   84 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhCc-----------hHHHHHHHHHHHHHHHHH-Hh--------------------
Confidence            4566777888888888888887654333           345666776666665443 21                    


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                        .+.+.++...++.|+|.+...+.....+.+..| ++|++++|+++...++|..+++.+.+.+.
T Consensus        85 --~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~  146 (355)
T TIGR00896        85 --PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLA  146 (355)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              245566777888999998877666666777666 58999999999999999999998887765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.57  E-value=5.1e-08  Score=99.68  Aligned_cols=83  Identities=10%  Similarity=0.185  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc---ccchhhh
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN---LNWALGF  107 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~---~g~~~~F  107 (439)
                      +.+.+.++|++.|+|.|+..+....++.+..|++.      |++...+...+.++|.+++..++-...+.   .+||+.+
T Consensus       101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~  174 (451)
T PF00083_consen  101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL  174 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence            78899999999999999999999999999999987      99999999999999999888776655433   4599999


Q ss_pred             HHHHHHHHHHHH
Q 013611          108 GIPCAFMVAALV  119 (439)
Q Consensus       108 ~i~~~~~~i~~~  119 (439)
                      .+..+..++..+
T Consensus       175 ~~~~~~~l~~~~  186 (451)
T PF00083_consen  175 IFGAIPSLLVLL  186 (451)
T ss_pred             cccccccccccc
Confidence            887755544333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.55  E-value=0.0053  Score=62.53  Aligned_cols=111  Identities=15%  Similarity=0.096  Sum_probs=79.2

Q ss_pred             HHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHH
Q 013611          258 TFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYL  337 (439)
Q Consensus       258 i~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  337 (439)
                      +..|+.+.+..++.+|+       ++++.+.++.++.+++.+..++....-     ..+         ..+...+++..+
T Consensus        74 ~~~~ig~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~~~~~~~~~~-----~~~---------~~~~~~l~~~R~  132 (432)
T PRK10406         74 LMRPIGGWLFGRIADKH-------GRKKSMLISVCMMCFGSLVIACLPGYE-----TIG---------TWAPALLLLARL  132 (432)
T ss_pred             HHHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHHHHHHHhhcCCch-----hHH---------HHHHHHHHHHHH
Confidence            34455566666666664       445677788888888877766542100     000         013446778889


Q ss_pred             HHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          338 LCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       338 l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      ++|+|++...+....++.+..|+++||+++++.......|..+++.+...+.
T Consensus       133 l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~  184 (432)
T PRK10406        133 FQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ  184 (432)
T ss_pred             HHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888899999999999999999999888888888876655443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.53  E-value=0.002  Score=65.39  Aligned_cols=158  Identities=15%  Similarity=0.085  Sum_probs=99.8

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+.+..+..+.-.+..|+.+.+.|+..+|+++      .+..+.+|....+++++++.....                ..
T Consensus        37 ~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Gr------rr~~i~~~~~~~~i~~~~~~~~~~----------------~~   94 (437)
T TIGR00792        37 VGTLFLVARILDAITDPIMGNIVDRTRTRWGK------FRPWLLIGAIPFSIVLVLLFTTPD----------------FS   94 (437)
T ss_pred             HHHHHHHHHHHHHhccchheEeeecCCCCCCC------cchhHHHhHHHHHHHHHHHHhCCC----------------CC
Confidence            35566667777788888888887765554422      123466777777777665543310                00


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhc-ChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQI-PKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD  403 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~a-P~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~  403 (439)
                      .....+|....+++.+++..+..++..+.....+ |++.|++..+..+....+|+.+++.+.+.+......         
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~---------  165 (437)
T TIGR00792        95 ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG---------  165 (437)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------
Confidence            1123567777788888888888777777777776 578999999999999999988887776655421110         


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          404 NLNRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       404 ~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                      .-+..++...+.+.++++++..++.+...+
T Consensus       166 ~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  195 (437)
T TIGR00792       166 GDDKFGWFMFALVLALIGVVSLIICFFGTK  195 (437)
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHcCCE
Confidence            000112345566667777666655544444

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.53  E-value=0.0084  Score=60.34  Aligned_cols=109  Identities=15%  Similarity=0.128  Sum_probs=78.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHH
Q 013611          286 RIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSF  365 (439)
Q Consensus       286 ~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~  365 (439)
                      .+.++.++.++++..+.+...                   ..++|++.+.+++.++......+...+++.+..|+++|++
T Consensus        70 ~l~~~~~~~~l~~~~l~~~~~-------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~  130 (402)
T PRK11902         70 WLLLTQVGLAASIAAMAFCPP-------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGA  130 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCc-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhH
Confidence            466667777777766655421                   1346666666677777777788888899999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 013611          366 GLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAF  428 (439)
Q Consensus       366 ~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~  428 (439)
                      +.++.....++|..+++.+.+.+.+..               .+....|+..+++.++..+..
T Consensus       131 ~~~~~~~g~~~g~i~g~~l~~~l~~~~---------------~gw~~~f~i~a~~~l~~~l~~  178 (402)
T PRK11902        131 GAAVKVLGYRLAMLVSGGLALWLADRV---------------LGWGNTYLLMAGLMLAGALTT  178 (402)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcc---------------cCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988877765310               122556777777666655543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.52  E-value=0.0014  Score=67.91  Aligned_cols=107  Identities=16%  Similarity=0.097  Sum_probs=79.8

Q ss_pred             HHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchH---HHHHH
Q 013611          258 TFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSV---WWLIP  334 (439)
Q Consensus       258 i~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~  334 (439)
                      +..|+.+.+..++.+|+       +.++.+.+++++++++.+..++.....                 ...+   ..++.
T Consensus        68 l~~~ig~~~~G~l~Dr~-------Grr~~l~~~~~l~~i~~~~~a~~~~~~-----------------~~g~~a~~~l~~  123 (490)
T PRK10642         68 LIRPLGGLFFGMLGDKY-------GRQKILAITIVIMSISTFCIGLIPSYA-----------------TIGIWAPILLLL  123 (490)
T ss_pred             HHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHhcccHH-----------------HHHHHHHHHHHH
Confidence            34455555555566664       445677888888888888777663210                 0112   24678


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611          335 QYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSII  388 (439)
Q Consensus       335 ~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~  388 (439)
                      ..+++|+|++...+....++.+..|++.||.++++......+|..+|+.+...+
T Consensus       124 ~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~  177 (490)
T PRK10642        124 CKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI  177 (490)
T ss_pred             HHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999988889999999999999999999988888888888766554

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.45  E-value=0.0017  Score=64.89  Aligned_cols=62  Identities=11%  Similarity=-0.029  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013611           33 IVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN  100 (439)
Q Consensus        33 ~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~  100 (439)
                      +..+.|-.+.+..+-.+.-.-+-+-+-||++++      |+.|-..-.+++.+|.++|.++.+.+..+
T Consensus       141 ~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  141 PLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             hhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecCC
Confidence            467788888888888888887888899999988      99999999999999999999998888653

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.44  E-value=0.0045  Score=63.92  Aligned_cols=96  Identities=13%  Similarity=0.187  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCccc
Q 013611          328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNR  407 (439)
Q Consensus       328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~  407 (439)
                      +.+.++...++.|+.|...+|....+..+.-.++.||+.+|+|+...++|+++|+.+...+........          .
T Consensus       133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~----------~  202 (495)
T KOG2533|consen  133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG----------L  202 (495)
T ss_pred             hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC----------c
Confidence            566788888999999999999999999999999999999999999999999999998887543211111          1


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          408 AHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       408 ~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                      .++.+.|.+-|+++++.+++.++..+
T Consensus       203 ~gW~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  203 AGWRWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             CCceeehhHHHHHHHHHHheEEEEec
Confidence            34477888889888888766544433

>PRK15075 citrate-proton symporter; Provisional

Probab=97.35  E-value=0.0084  Score=61.09  Aligned_cols=108  Identities=13%  Similarity=0.111  Sum_probs=75.5

Q ss_pred             HhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHH
Q 013611          261 PIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCG  340 (439)
Q Consensus       261 pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g  340 (439)
                      |+...+..++.+|.       +.++.+..+.++.+++....++......     .+         ......+++..++.|
T Consensus        70 ~ig~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~l~~~~~~~~~-----~~---------~~~~~~l~~~R~l~G  128 (434)
T PRK15075         70 PLGAIVLGAYIDRV-------GRRKGLIVTLSIMASGTLLIAFVPGYAT-----IG---------LAAPLLVLLGRLLQG  128 (434)
T ss_pred             hhHHHHHHHHhhhh-------chHHHHHHHHHHHHHHHHHHHhCCcHHH-----HH---------HHHHHHHHHHHHHhh
Confidence            44455555555664       4456777888888888777775521000     00         000123566778999


Q ss_pred             HHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          341 IADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       341 ige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      ++++...+....++.+..|++.||+++++.....++|..+++.+++.+.
T Consensus       129 ~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~  177 (434)
T PRK15075        129 FSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLN  177 (434)
T ss_pred             ccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888877789999999999999999999988888888887777654

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.32  E-value=0.02  Score=60.21  Aligned_cols=138  Identities=14%  Similarity=0.268  Sum_probs=94.4

Q ss_pred             cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611          244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV  323 (439)
Q Consensus       244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (439)
                      ...|+...+.+...+..|+.+++.+-+.||+           -+..|.++..+|+++.+..+                  
T Consensus        79 ~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA~------------------  129 (599)
T PF06609_consen   79 NWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATAQ------------------  129 (599)
T ss_pred             cchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcCC------------------
Confidence            3468888889998999999999887665553           56778888888887777552                  


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCC
Q 013611          324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD  403 (439)
Q Consensus       324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~  403 (439)
                          +...++...++.|+|.+...... ..+.+.+|.+.|+...++..+.......+|+.+...+..      +.+|   
T Consensus       130 ----~~~~~iag~~l~GvgaG~~~~~~-~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~------~~~W---  195 (599)
T PF06609_consen  130 ----NMNTFIAGMVLYGVGAGVQELAA-LAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA------HSGW---  195 (599)
T ss_pred             ----cHHHHHHHHHHHHHhhHHHHHHH-HHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc------CCCc---
Confidence                45557888999999977765544 457889999999888877766655555566666655432      1245   


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611          404 NLNRAHLDYFYWLLAALSAGGLLAFLYF  431 (439)
Q Consensus       404 ~l~~~~~~~~f~~~~~l~~l~~~i~~~~  431 (439)
                             .|.|++.+++..++.++..++
T Consensus       196 -------Rw~~~~~~i~~~i~~vl~~~f  216 (599)
T PF06609_consen  196 -------RWIFYIFIIWSGIALVLIFFF  216 (599)
T ss_pred             -------chHHHHHHHHHHHHHHHHHHH
Confidence                   344555555555555444333

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.13  Score=52.33  Aligned_cols=158  Identities=14%  Similarity=0.107  Sum_probs=92.7

Q ss_pred             hhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC--CCCCCCC
Q 013611          247 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGL--IDKPNVT  324 (439)
Q Consensus       247 ~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  324 (439)
                      .+..++.+.+-+...+.+..+..+.+|. ++   ......+.+|.++.-+++.+.-..      +++|...  .+++...
T Consensus       279 ~~~ai~~~~~g~g~v~~g~~~~~l~~ri-r~---fg~~~~~~~~~~~~~~~~~li~l~------~p~dap~~~t~~~~~~  348 (461)
T KOG3098|consen  279 YLIAIYSIGIGLGEVIGGLDFSILSKRI-RG---FGRKPTVLIGIIIHLIGFLLIHLS------FPNDAPLRPTDSPPLL  348 (461)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHhhhh-hh---cccCcchhHHHHHHHHHHHHHhcc------ccccCCCCCCcccccc
Confidence            4566777777776666666666665553 33   355556677766655554443322      1222211  1111000


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                      .+-+.....+..+++|+++.......+.++.... ++.|..+.+++-+..++++.++........               
T Consensus       349 ~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~---------------  412 (461)
T KOG3098|consen  349 FTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYLL---------------  412 (461)
T ss_pred             cccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhhH---------------
Confidence            1112334556678999999999888888888888 677888888888888888876544333221               


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFLYFAKSY  435 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~  435 (439)
                           ...+...+.+++.+...++....++.
T Consensus       413 -----l~~~~l~~~i~~~i~~~~~~~~~~~~  438 (461)
T KOG3098|consen  413 -----LYIYTLGLPIFCVIATTIFFIVAERT  438 (461)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 11223444566666666666665543

>PRK09952 shikimate transporter; Provisional

Probab=97.24  E-value=0.0036  Score=63.96  Aligned_cols=112  Identities=21%  Similarity=0.149  Sum_probs=81.1

Q ss_pred             HHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHH
Q 013611          257 ITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQY  336 (439)
Q Consensus       257 ii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  336 (439)
                      .+..|+.+.+..++.+|+       ++++.+.++.++.+++.++.++......     .+         ..+.+.+++..
T Consensus        74 ~~~~~~g~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~~~~~~~~~~~-----~~---------~~~~~~l~~~R  132 (438)
T PRK09952         74 FLFRPLGGVVFGHFGDRL-------GRKRMLMLTVWMMGIATALIGLLPSFST-----IG---------WWAPVLLVTLR  132 (438)
T ss_pred             HHHHhhHHHHHHHHHHhh-------ccHHHHHHHHHHHHHHHHHHhcCCcHHH-----HH---------HHHHHHHHHHH
Confidence            345667666666677764       4456777888888888777666521000     00         01122466778


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          337 LLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       337 ~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      +++|++++...+....++.+..|++.||.+++.......+|..++..+...+.
T Consensus       133 ~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~  185 (438)
T PRK09952        133 AIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS  185 (438)
T ss_pred             HHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999998888889999999999999999999999999998887766554

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.22  E-value=0.032  Score=55.93  Aligned_cols=90  Identities=8%  Similarity=-0.047  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhH--HHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611          328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELK--SFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL  405 (439)
Q Consensus       328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~--g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l  405 (439)
                      +.+++.....+.+.......|...+.+.+..|++.|  +.+++..+...++|..+|+.+++.+.+.              
T Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~--------------  169 (393)
T PRK15011        104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG--------------  169 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh--------------
Confidence            344443333344434444566666666666665543  4566888889999999999999988632              


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          406 NRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       406 ~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                        .+....|...+.+.++..+..+...+
T Consensus       170 --~gw~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        170 --FSFTVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             --cChHHHHHHHHHHHHHHHHHHHhhcC
Confidence              12355677777777776665554434

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.19  E-value=0.014  Score=57.83  Aligned_cols=152  Identities=18%  Similarity=0.119  Sum_probs=97.8

Q ss_pred             CccccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 013611          240 SIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLID  319 (439)
Q Consensus       240 g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  319 (439)
                      ++.++.+....+.++.++... +.......+.+|.       ..++...+++++..+-.+..++...             
T Consensus        43 ~~~LS~~q~~ll~aiPil~Ga-llRl~~g~l~drf-------GgR~~~~~s~~l~~IP~~~~~~a~~-------------  101 (417)
T COG2223          43 DFGLSEGQKGLLVAIPILVGA-LLRLPYGFLTDRF-------GGRKWTILSMLLLLIPCLGLAFAVT-------------  101 (417)
T ss_pred             ccCCCHHHHHHHHHHHHHHhH-HHHHHHHhhhccc-------CchHHHHHHHHHHHHHHHHHHHHcc-------------
Confidence            334666665555555544432 3333344444553       5566778888888888888887742             


Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCC
Q 013611          320 KPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDS  399 (439)
Q Consensus       320 ~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~  399 (439)
                            ..+.|.++..-++.|++-+-..+.+ ..+.+.-||+++|+++|++. ..|+|..+...+...+....      .
T Consensus       102 ------~~~~~~ll~~gll~G~~GasFav~m-~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~------g  167 (417)
T COG2223         102 ------YPSTWQLLVIGLLLGLAGASFAVGM-PNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF------G  167 (417)
T ss_pred             ------CCchHHHHHHHHHHhcccceehccc-ccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH------h
Confidence                  1234666666677777766666666 68899999999999999999 89999988887777665321      1


Q ss_pred             CCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          400 WFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       400 ~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                      +       +.....-.+.....+++.+.+++..+
T Consensus       168 ~-------~~w~~~~~i~~~~l~v~~v~~~~~~~  194 (417)
T COG2223         168 F-------LAWRNVAGIYVVALAIAAVLAWLGMN  194 (417)
T ss_pred             h-------HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            0       00122333444566666677776655

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.18  E-value=0.12  Score=50.70  Aligned_cols=85  Identities=18%  Similarity=0.160  Sum_probs=57.7

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG  108 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~  108 (439)
                      ..++..+++.|.+.++|.|+ .|...++-....|...      |..-.-.. ....+|.++.-.+.=....++||||...
T Consensus       163 spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~  234 (528)
T KOG0253|consen  163 SPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLF  234 (528)
T ss_pred             CCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            44667789999999999999 9999998888888755      44443333 4456777776666655666779997554


Q ss_pred             HHH-HHHHHHHHHH
Q 013611          109 IPC-AFMVAALVLF  121 (439)
Q Consensus       109 i~~-~~~~i~~~l~  121 (439)
                      ... ..++.+...+
T Consensus       235 ~~~~pl~~~a~f~~  248 (528)
T KOG0253|consen  235 TSSTPLMFAARFLV  248 (528)
T ss_pred             HHHhHHHHHHHHHh
Confidence            444 3344343333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.16  E-value=0.013  Score=58.71  Aligned_cols=140  Identities=11%  Similarity=0.033  Sum_probs=81.2

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHH-HHHHHHHHhhhCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALV-EIKRLETAKEYGLIDKPNV  323 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~  323 (439)
                      .+.+..+..+...+..|+.+++.|++.+|+           .+..+....+++....... ....               
T Consensus        40 ~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~-----------~~~~~~~~~~~~~~~~~~~~~~~~---------------   93 (396)
T TIGR00882        40 TGIVFSCISLFSILFQPLFGLISDKLGLKK-----------HLLWIISGLLVLFAPFFIYVFGPL---------------   93 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHHHHHhhhH---------------
Confidence            466777888888888888888877655442           3333333333322211111 0000               


Q ss_pred             CCcch-HHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCC
Q 013611          324 TIPTS-VWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFA  402 (439)
Q Consensus       324 ~~~~~-~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~  402 (439)
                       ...+ .+...+..++.+++.....+...+++.+..++  ++...|......++|..+|+.+++.+.+.           
T Consensus        94 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-----------  159 (396)
T TIGR00882        94 -LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILFSI-----------  159 (396)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhhcc-----------
Confidence             0011 22234455677777777777776666554433  34566777788899999999998877531           


Q ss_pred             CCcccchhhHHHHHHHHHHHHHHHHHHH
Q 013611          403 DNLNRAHLDYFYWLLAALSAGGLLAFLY  430 (439)
Q Consensus       403 ~~l~~~~~~~~f~~~~~l~~l~~~i~~~  430 (439)
                            +....|+..++++++..++.+.
T Consensus       160 ------~~~~~f~~~~~~~~~~~~~~~~  181 (396)
T TIGR00882       160 ------DPQIVFWLGSGFALILMLLLMF  181 (396)
T ss_pred             ------CchHHHHHHHHHHHHHHHHHHH
Confidence                  1244666667777766554443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.12  E-value=0.0033  Score=61.53  Aligned_cols=110  Identities=16%  Similarity=0.222  Sum_probs=82.3

Q ss_pred             hhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCc
Q 013611          247 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIP  326 (439)
Q Consensus       247 ~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (439)
                      .+.+.-.+.=.+..|+.+.+.    +++++|       ..+.+|.+..++++.+.+...                     
T Consensus        72 flGSsF~ilQ~~sS~~~G~~S----D~yGRk-------pvll~c~~~va~s~ll~~~S~---------------------  119 (451)
T KOG2615|consen   72 FLGSSFSILQFISSPLWGCLS----DRYGRK-------PVLLACLIGVALSYLLWALSR---------------------  119 (451)
T ss_pred             hHhhHHHHHHHHhhhhhhhhh----hhhCch-------HHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            333334444444555555544    454333       366777777888777776542                     


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                       ++..++.+-++.|+..+.+.+.- +++.+.++++.|+.+|+......++|-.+||++++.+.+
T Consensus       120 -~F~afv~aR~l~Gi~kgnl~v~r-AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  120 -NFAAFVLARFLGGIFKGNLSVIR-AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             -HHHHHHHHHHhhhhccCchHHHH-HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence             45456777899999999988877 799999999999999999999999999999999999876

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.09  E-value=9.6e-05  Score=77.29  Aligned_cols=177  Identities=15%  Similarity=0.139  Sum_probs=3.0

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHH--HHHHHh---------
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIK--RLETAK---------  313 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~--~~~~~~---------  313 (439)
                      .|++.+.+-+..++...+..++    ..|       .++++.+++|.+++++|.++.++-+-.  .|+.+.         
T Consensus        40 ~G~i~s~~di~~~~~~~~vsy~----g~~-------~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~  108 (539)
T PF03137_consen   40 SGLISSSYDIGSLVVVLFVSYF----GGR-------GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSS  108 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----hhh-------cCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccc
Confidence            3455555555555555444443    222       256678999999999998888754432  111110         


Q ss_pred             -hhCCC---------------CC-CCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhh
Q 013611          314 -EYGLI---------------DK-PNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGV  376 (439)
Q Consensus       314 -~~~~~---------------~~-~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~i  376 (439)
                       +...|               .+ ++.......+++++++++.|+|.....+-+.+++.+.++++..+.+.|+.+....+
T Consensus       109 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~l  188 (539)
T PF03137_consen  109 ISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSIL  188 (539)
T ss_dssp             -------------------------------------------SSS----------------------------------
T ss_pred             cccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhc
Confidence             01112               00 00111123577889999999999999888889999999999999999999999999


Q ss_pred             hhhhhhHHHhhhhc----cccCC--------CCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCccC
Q 013611          377 GGFLSSILVSIINE----ATSRD--------GGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNRE  438 (439)
Q Consensus       377 G~~ig~~l~~~~~~----~~~~~--------~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~~  438 (439)
                      |.++|-.+++....    ....+        .+.+|+      |-.+.-|...+.+.++.++-+..+-|++++.
T Consensus       189 GPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~Wv------GAWWLGfli~g~~~~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  189 GPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWV------GAWWLGFLICGILLFLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHH------HHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence            99999888775532    21111        123443      3334447777888888888888877776543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.06  E-value=0.017  Score=57.69  Aligned_cols=115  Identities=9%  Similarity=-0.104  Sum_probs=71.0

Q ss_pred             ccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 013611          243 IPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPN  322 (439)
Q Consensus       243 ~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (439)
                      ...+....+..+..++..|+.+.+.++..++.       ...+.+.++..+.  +. .....                  
T Consensus        39 ~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~--~~-~~~~~------------------   90 (382)
T PRK11128         39 ETIGLLLGAGLVARFLGSLLIAPRVKDPSQLI-------PALRLLALLTLLF--AV-AFWFG------------------   90 (382)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhhhcchH-------HHHHHHHHHHHHH--HH-HHHHh------------------
Confidence            34566677777777887888777765444321       1112222221111  11 11111                  


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          323 VTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       323 ~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                         ..+.|.+.+...+.+++.....+...+.+.+.  ++.|+..+|......++|..+|+.+++.+.+
T Consensus        91 ---~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~  153 (382)
T PRK11128         91 ---AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS  153 (382)
T ss_pred             ---cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence               13566666777778888777776665555544  4557788888888889999999999998864

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.01  E-value=0.0043  Score=62.16  Aligned_cols=87  Identities=22%  Similarity=0.422  Sum_probs=60.2

Q ss_pred             CCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHH----HHHHHHHHHHHHHHHHHhhh----
Q 013611           28 HHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWW----YFGISFGANSTILVVIYIQD----   99 (439)
Q Consensus        28 ~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~----y~~~nlG~~ig~~l~g~l~~----   99 (439)
                      +..-...+++.|.++|+|.|+=.|+..++..+...++.      |+...++.    .+++-.|+.++.++.+-...    
T Consensus       140 ~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~  213 (538)
T KOG0252|consen  140 PLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNG  213 (538)
T ss_pred             CcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCC
Confidence            33567789999999999999999999998888877765      66655554    45555555555555554321    


Q ss_pred             -------cccchhhhHHHHHHHHHHHHHHHh
Q 013611          100 -------NLNWALGFGIPCAFMVAALVLFLL  123 (439)
Q Consensus       100 -------~~g~~~~F~i~~~~~~i~~~l~~~  123 (439)
                             ..=||..|.+..   +.+++++++
T Consensus       214 ~~~~~~ld~vWRl~~glg~---vpa~~~ly~  241 (538)
T KOG0252|consen  214 PSTYPHLDGVWRIIFGLGA---VPALLVLYF  241 (538)
T ss_pred             CCCchHHHHHHHHHHHHHH---HHHHHHHHh
Confidence                   245888888777   445544444

>PRK09528 lacY galactoside permease; Reviewed

Probab=96.98  E-value=0.0011  Score=67.05  Aligned_cols=86  Identities=10%  Similarity=0.027  Sum_probs=69.2

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHH-HHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW-WYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~-~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      +.+.+++.+.+.+++.+...+.....+.+.+|++.      |++.++. +.+..++|.++|+.++|++.+.+||+..|.+
T Consensus       314 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~  387 (420)
T PRK09528        314 GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLI  387 (420)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence            45566777888888888888888888899998765      7777665 6677899999999999999999999999998


Q ss_pred             HHHHHHHHHHHHH
Q 013611          110 PCAFMVAALVLFL  122 (439)
Q Consensus       110 ~~~~~~i~~~l~~  122 (439)
                      .++..++..++.+
T Consensus       388 ~~~~~~i~~~~~~  400 (420)
T PRK09528        388 LGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHHHH
Confidence            7766665554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.97  E-value=0.0082  Score=59.34  Aligned_cols=94  Identities=15%  Similarity=0.086  Sum_probs=69.0

Q ss_pred             CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611          282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE  361 (439)
Q Consensus       282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~  361 (439)
                      ++++.+.++.++.+++.....+.....     +.         .....+.+++..+++|++.+...+....++.+..|++
T Consensus        63 g~r~~l~~~~~~~~~~~~~~~~~~~~~-----~~---------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~  128 (394)
T TIGR00883        63 GRKKTLVITLLMMGIGTLLIGLLPSYA-----TI---------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPG  128 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhCCChh-----hh---------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcc
Confidence            344566778888877776666542100     00         0011234667778999999988888888999999999


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          362 LKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       362 ~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      .|+++++.......+|..+++.+...+.
T Consensus       129 ~r~~~~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883       129 KRGFYGSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998877654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.86  E-value=0.018  Score=60.09  Aligned_cols=109  Identities=17%  Similarity=0.179  Sum_probs=88.5

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      +++.+...+...+..++.+++.+.+.||           +.+.++.++..++.++.+++                     
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk-----------~~l~~~~~~~~iG~ii~~~a---------------------  139 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRK-----------KTLLLAVVLFLIGAIIIALA---------------------  139 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence            6788888888888888888876655554           35677777777777777765                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSII  388 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~  388 (439)
                       .+.++++...++.|+|-++......-++...+|++.||...+...+...+|..++ .+++..
T Consensus       140 -~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~  200 (513)
T KOG0254|consen  140 -PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYG  200 (513)
T ss_pred             -hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhh
Confidence             2678899999999999999987777899999999999999999999999888888 444444

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.82  E-value=0.0081  Score=59.94  Aligned_cols=125  Identities=17%  Similarity=0.136  Sum_probs=90.4

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh---
Q 013611          285 QRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE---  361 (439)
Q Consensus       285 ~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~---  361 (439)
                      +-+.+|.++..+|.+++......             +......+.+.+.+...+.++|.++.-|+...+..+|.+++   
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~-------------~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~   68 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIP-------------PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS   68 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTS-------------SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhc-------------chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence            45678888899998887665420             00001234466788888999999999999999999998866   


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCccC
Q 013611          362 LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNRE  438 (439)
Q Consensus       362 ~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~~  438 (439)
                      .+..+...++...++|..++..+.+.+.+.                .++...|.+.++.++++.+.|+.-.++|+++
T Consensus        69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~----------------~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQN----------------YGWFLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHC----------------S-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hhhhhHHHHHHHHhhhhHhhcccchhhccc----------------cchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            566677888999999999998888877531                3456778888899999988888887777664

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=96.78  E-value=0.054  Score=54.08  Aligned_cols=61  Identities=8%  Similarity=-0.074  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                      +.|.+++..++++.+.....|.....+.+  ++++|++..|......++|..+++.+.+.+.+
T Consensus        93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~  153 (382)
T TIGR00902        93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIG  153 (382)
T ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777777887777666666555543  46788999999999999999999999998864

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09669 putative symporter YagG; Provisional

Probab=96.76  E-value=0.03  Score=57.19  Aligned_cols=121  Identities=8%  Similarity=0.012  Sum_probs=76.1

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      +.+..+.-++-.+.-|+.+.+.|+...|+++      .++.+..|.+..++++.+.....                +...
T Consensus        48 g~i~~i~~i~dai~dp~~G~lsD~~~~r~Gr------rrp~il~~~~~~~i~~~l~f~~p----------------~~~~  105 (444)
T PRK09669         48 GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQ------FRPYLLWFAIPFGVVCLLTFYTP----------------DFGA  105 (444)
T ss_pred             HHHHHHHHHHHHcccceeeEeeecCCCCCCC------cchhHHHHHHHHHHHHHHHHhCC----------------CCCc
Confidence            3444555555666677777777655544421      12345566666666654433221                0001


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhc-ChhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQI-PKELKSFGLSIYMSVLGVGGFLSSILVSII  388 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~a-P~~~~g~~~gl~~~~~~iG~~ig~~l~~~~  388 (439)
                      ....+|..+.+++.+.+..+..++..+...... +.+.|+..++.-....++|+.+++.+...+
T Consensus       106 ~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl  169 (444)
T PRK09669        106 TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPL  169 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            124567777777777777777777777777776 567899998988888889888887765544

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.70  E-value=0.018  Score=61.36  Aligned_cols=150  Identities=18%  Similarity=0.178  Sum_probs=105.9

Q ss_pred             CchhHHhHHHHHHHHHHHHHHHHHHH--HHHHHhhh-------C--------------CCCC---CC---CCCcc-hHHH
Q 013611          282 TMLQRIGAGMLLSSISMVVAALVEIK--RLETAKEY-------G--------------LIDK---PN---VTIPT-SVWW  331 (439)
Q Consensus       282 ~~~~~i~iG~~l~~i~~~~~~~~~~~--~~~~~~~~-------~--------------~~~~---~~---~~~~~-~~~~  331 (439)
                      +..+.+++|.++++++.++.++.+-.  .|+.+.+.       .              .+..   +.   +..+. .+..
T Consensus       160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  239 (735)
T KOG3626|consen  160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL  239 (735)
T ss_pred             CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence            55678899999999999888766431  22222111       0              0000   00   11122 3346


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhcc-----cc----CCCCCCCCC
Q 013611          332 LIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA-----TS----RDGGDSWFA  402 (439)
Q Consensus       332 ~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~-----~~----~~~~~~~~~  402 (439)
                      +++++++.|+|+-...+-+..++.+.+-++..+.+.|+.+.++.+|-++|-+++++....     .+    .+.+.+|+ 
T Consensus       240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI-  318 (735)
T KOG3626|consen  240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI-  318 (735)
T ss_pred             HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh-
Confidence            778889999999999888889999999999999999999999999999999888877422     01    01124553 


Q ss_pred             CCcccchhhHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013611          403 DNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR  437 (439)
Q Consensus       403 ~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~  437 (439)
                           |-.+.-|.+.+.+.+++.+-++++-|.+++
T Consensus       319 -----GAWWlGFLi~g~~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  319 -----GAWWLGFLICGALLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence                 445556888899999999999988887764

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.67  E-value=0.78  Score=46.06  Aligned_cols=62  Identities=18%  Similarity=0.248  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      ++|.+.+..+..|+-.+.+-++....+.++.|++.|-.++|.....-++|-.+++.++-.+.
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            46656566677788888888888889999999999999999999999999998887765553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.55  E-value=0.26  Score=49.09  Aligned_cols=99  Identities=19%  Similarity=0.177  Sum_probs=71.5

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHH--HHHHHHHHHHHHHHHHhhhhHHHHHhhcCh
Q 013611          283 MLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVW--WLIPQYLLCGIADVFTIVGLQEFFYDQIPK  360 (439)
Q Consensus       283 ~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~l~gige~l~~~~~~~~~~~~aP~  360 (439)
                      ....+..|..+.+.+...+.+.-...-+       ..+++ ..+...+  ...+.+++.|+|......+..+.+.+.+|+
T Consensus        49 RtPyI~~G~~~~~~g~~~ap~a~~~l~~-------~~~~~-~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e  120 (403)
T PF03209_consen   49 RTPYIWGGTLLQAGGLAIAPFALLLLAE-------SGQQS-SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE  120 (403)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHcc-------ccccc-ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH
Confidence            3446778888888887777665432110       00000 0111222  345666778888888899999999999999


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          361 ELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       361 ~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      +.|+.+.++.+.+.-+|..++..+.+.+-
T Consensus       121 ~~R~~~v~ivw~Mli~G~iv~ai~~g~lL  149 (403)
T PF03209_consen  121 ERRPRVVAIVWVMLIVGIIVSAIVFGRLL  149 (403)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999888764

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=96.49  E-value=0.0095  Score=61.49  Aligned_cols=87  Identities=15%  Similarity=0.194  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-chhhhHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN-WALGFGI  109 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g-~~~~F~i  109 (439)
                      +.+.+++.=++.|+..|..++...++.++..|+++      .+.+|+++....-..+.+||++.|.+.+..| .|++|..
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~  452 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF  452 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence            34446666678999999999999999999999987      7899999999999999999999999988765 8999998


Q ss_pred             HHHHHHHHHHHHHh
Q 013611          110 PCAFMVAALVLFLL  123 (439)
Q Consensus       110 ~~~~~~i~~~l~~~  123 (439)
                      ..+..++++++.+.
T Consensus       453 l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  453 LLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHHHHHHhh
Confidence            88888888876643

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=96.48  E-value=0.047  Score=56.82  Aligned_cols=134  Identities=14%  Similarity=0.164  Sum_probs=99.2

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+|+.++......+..|+...+.    +|+       +.+..+.+|.++.++|+++..+..                   
T Consensus        83 ~~~i~sl~~~~~~~~gpl~s~l~----~rf-------g~R~v~i~G~~v~~~g~~lssF~~-------------------  132 (509)
T KOG2504|consen   83 IAWIGSLLLGVYLLAGPLVSALC----NRF-------GCRTVMIAGGLVAALGLLLSSFAT-------------------  132 (509)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHH----hhc-------CchHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            67888888888888888877764    343       455678899999999999998873                   


Q ss_pred             CcchHHHHHHHH-HHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQY-LLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD  403 (439)
Q Consensus       325 ~~~~~~~~i~~~-~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~  403 (439)
                         ++|.+++.+ ++.|+|.++...+.. .+...-.+++|++++|+.....++|..+-+.+...+.+.            
T Consensus       133 ---~i~~l~lt~gvi~G~G~~~~~~pai-viv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~------------  196 (509)
T KOG2504|consen  133 ---SLWQLYLTFGVIGGLGLGLIYLPAV-VILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSK------------  196 (509)
T ss_pred             ---hHHHHHHHHHHHhhccchhhhcchh-hhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHH------------
Confidence               577777666 778999999876664 344467788999999999999999999888887766532            


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHH
Q 013611          404 NLNRAHLDYFYWLLAALSAGGLLAF  428 (439)
Q Consensus       404 ~l~~~~~~~~f~~~~~l~~l~~~i~  428 (439)
                          .+..+.++.++.+++-..+.-
T Consensus       197 ----~G~r~~~l~~~~~~l~~~~~~  217 (509)
T KOG2504|consen  197 ----YGWRGALLIFGGISLNVLVAG  217 (509)
T ss_pred             ----hCcHHHHHHHHHHHHHHHHHH
Confidence                222556666666664443333

>PRK11462 putative transporter; Provisional

Probab=96.42  E-value=0.11  Score=53.55  Aligned_cols=111  Identities=13%  Similarity=0.002  Sum_probs=75.9

Q ss_pred             HHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHH
Q 013611          256 IITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQ  335 (439)
Q Consensus       256 iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  335 (439)
                      =.+.-|+.+.+.|+...|+++      .+..+.+|.+.+++++.++.....        .+        ......|..+.
T Consensus        58 Dai~Dp~~G~~~D~t~~r~Gr------~rp~il~g~i~~~i~~~llf~~p~--------~s--------~~~~~~y~~~~  115 (460)
T PRK11462         58 DAISDPCMGLLADRTRSRWGK------FRPWVLFGALPFGIVCVLAYSTPD--------LS--------MNGKMIYAAIT  115 (460)
T ss_pred             HHHHhhhheehhccCCCCCCC------cchhHhHHHHHHHHHHHHHHhCCC--------CC--------cchHHHHHHHH
Confidence            344556666666654444322      234556777777777655442210        00        01125678888


Q ss_pred             HHHHHHHHHHHhhhhHHHHHhhcC-hhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611          336 YLLCGIADVFTIVGLQEFFYDQIP-KELKSFGLSIYMSVLGVGGFLSSILVSII  388 (439)
Q Consensus       336 ~~l~gige~l~~~~~~~~~~~~aP-~~~~g~~~gl~~~~~~iG~~ig~~l~~~~  388 (439)
                      +++..++.-+..++..+.....++ +++|+..++.-....++|+.+++.+...+
T Consensus       116 ~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~pl  169 (460)
T PRK11462        116 YTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPL  169 (460)
T ss_pred             HHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888999998888899999988 99999999999999999888887775544

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.31  E-value=1.5  Score=45.20  Aligned_cols=41  Identities=10%  Similarity=0.137  Sum_probs=36.4

Q ss_pred             chhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 013611           52 CTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ   98 (439)
Q Consensus        52 ~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~   98 (439)
                      .-.++..|.++.+|      =.|.|+.++.+.|+|..+|+.+..++.
T Consensus       149 lFW~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       149 LFWGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788899999876      568999999999999999999999876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.30  E-value=0.075  Score=54.38  Aligned_cols=156  Identities=14%  Similarity=0.096  Sum_probs=97.0

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      -|+......+...++.|+++.+-.    |.      .+.++-+.+|.+++.+|..+....+..                 
T Consensus        73 fG~viaa~slg~~i~~liF~~Ws~----k~------~~~k~Pli~s~ii~~~g~llY~~l~~~-----------------  125 (488)
T KOG2325|consen   73 FGLVIAASSLGHAIFSLIFGIWSN----KT------GSVKKPLIVSFLIAIIGNLLYLALAYV-----------------  125 (488)
T ss_pred             hhHHHHHHHHHHHhcchhhccccc----cc------CCcccCHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence            356667788888888888777532    21      133567889999999999988666531                 


Q ss_pred             Ccc-hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCC-
Q 013611          325 IPT-SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFA-  402 (439)
Q Consensus       325 ~~~-~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~-  402 (439)
                       +. ..|++.+++++.|+|.+-..+-= .++....-.+.|.++++.....+.+|..+||.+...+...  .+++-.|++ 
T Consensus       126 -~~~~~y~mL~~R~l~Gvg~~n~a~lR-~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L--g~~G~~i~~~  201 (488)
T KOG2325|consen  126 -PNGVKYLMLVARILTGVGVGNFAVLR-AYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL--GEKGFMILPG  201 (488)
T ss_pred             -ccchHHHHHHHHHHcCcCcccHHHHH-HHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh--cCCceEEcCc
Confidence             12 57889999999999966654333 3455544455566666666666667777777766655432  123345555 


Q ss_pred             CCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          403 DNLNRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       403 ~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                      ..+|.+.  .-=|+.+.+.++..++..+..+
T Consensus       202 ~~~n~YT--ap~w~m~i~~i~~~v~i~~~f~  230 (488)
T KOG2325|consen  202 LIFNMYT--APAWLMAILWIIYIVIILFFFK  230 (488)
T ss_pred             ceEEecc--hHHHHHHHHHHHHHHHHHhhee
Confidence            3444332  2234455566666666555544

>PRK10429 melibiose:sodium symporter; Provisional

Probab=96.09  E-value=0.23  Score=51.22  Aligned_cols=119  Identities=13%  Similarity=0.082  Sum_probs=78.5

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      +.+..+..++-.+.-|+.+.+.|+...|+++      .+..+.+|.+..++++.++....                +.+.
T Consensus        45 g~i~~i~ri~dai~dp~~G~lsD~t~sr~Gr------rrp~il~g~i~~~i~~~llf~~p----------------~~~~  102 (473)
T PRK10429         45 GTLFLVARIWDAINDPIMGWIVNNTRSRWGK------FKPWILIGTLANSVVLFLLFSAH----------------LFEG  102 (473)
T ss_pred             HHHHHHHHHHHHHhhchheeehhcCCCCCCC------cchhHhhhhHHHHHHHHHHHcCC----------------CCCc
Confidence            4455666666677777778777765444422      23456677777777765553210                0000


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhc-ChhhHHHHHHHHHHHhhhhhhhhhHHHh
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQI-PKELKSFGLSIYMSVLGVGGFLSSILVS  386 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~a-P~~~~g~~~gl~~~~~~iG~~ig~~l~~  386 (439)
                      ....+|..+.+++..++.-+..++..+.....+ +++.|....+.-....++|+.+.+.+..
T Consensus       103 ~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~  164 (473)
T PRK10429        103 TAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL  164 (473)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            123567778888888888888888888999988 5899999888867777777666655544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.09  E-value=0.12  Score=44.67  Aligned_cols=62  Identities=11%  Similarity=0.184  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      +.+.+++.-++.|+|..+.+++.-.++.+...++.+++..|++....+.+..+|..+.-.+.
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678889999999999999998899999999999999999999999998888876655543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=96.01  E-value=0.019  Score=57.47  Aligned_cols=75  Identities=12%  Similarity=0.002  Sum_probs=60.3

Q ss_pred             HHHHHHhccCCccchhhhhhccCCC-CChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHH
Q 013611           39 LYLVAIGQGGHKPCTQAFGADQFDA-QNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAA  117 (439)
Q Consensus        39 l~l~gig~g~~~p~~~a~~~~~f~~-~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~i~  117 (439)
                      ..+.+++.|...+...+...+..++ +.      +++.++......++|..+||.++|++.+..||+..|.+.++..+++
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA  383 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            3444556677777777777777765 44      8999999999999999999999999999999999999888666655


Q ss_pred             HH
Q 013611          118 LV  119 (439)
Q Consensus       118 ~~  119 (439)
                      ..
T Consensus       384 ~~  385 (390)
T TIGR02718       384 IL  385 (390)
T ss_pred             HH
Confidence            44

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=95.88  E-value=0.023  Score=57.32  Aligned_cols=82  Identities=12%  Similarity=0.101  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHH-HHHHHHHHHHHHhhhcccchh------hhH
Q 013611           36 IFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGIS-FGANSTILVVIYIQDNLNWAL------GFG  108 (439)
Q Consensus        36 ~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~n-lG~~ig~~l~g~l~~~~g~~~------~F~  108 (439)
                      ..+..+.|+..|.+.+....++.+..|++.      |.++.+++....+ +|.++|..++|++.+.+|-+.      .|.
T Consensus       305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~  378 (400)
T PF03825_consen  305 LLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFL  378 (400)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence            334456899999999999999999999988      9999999988655 999999999999999877664      445


Q ss_pred             HHHHHHHHHHHHHHh
Q 013611          109 IPCAFMVAALVLFLL  123 (439)
Q Consensus       109 i~~~~~~i~~~l~~~  123 (439)
                      ++++..++..+++++
T Consensus       379 v~a~~~~~~~~~f~~  393 (400)
T PF03825_consen  379 VFAVMALVILVLFVI  393 (400)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            555555555555544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=95.73  E-value=0.053  Score=55.07  Aligned_cols=157  Identities=17%  Similarity=0.170  Sum_probs=97.6

Q ss_pred             hhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcch
Q 013611          249 QLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTS  328 (439)
Q Consensus       249 ~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (439)
                      ..+..++-.+.-|+.+.+.|+...|+++      .+..+.+|.+..++++.++......              +......
T Consensus        43 ~~~~~i~dai~dp~~G~~sDr~~tr~Gr------rrp~~l~g~i~~~~~~~llf~~~p~--------------~~~~~~~  102 (428)
T PF13347_consen   43 LLVGRIWDAITDPLIGYLSDRTRTRWGR------RRPWILIGAILLALSFFLLFSPPPA--------------GLSFTAK  102 (428)
T ss_pred             HHHHHHhhhhcCCcEEEEEeeecccccc------cceEeehhhHHHHHHHHHhhccccc--------------hhhhhhH
Confidence            3333444444455555555543333321      2335567888888887777644110              0000124


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHhhcC-hhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCccc
Q 013611          329 VWWLIPQYLLCGIADVFTIVGLQEFFYDQIP-KELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNR  407 (439)
Q Consensus       329 ~~~~i~~~~l~gige~l~~~~~~~~~~~~aP-~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~  407 (439)
                      ..|+.+.+++..++.-...++..+...+.++ ++.|...++.-.+...+|+.+...+.+.+....+         +.-..
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g---------~~~~~  173 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFG---------GGDTS  173 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhc---------cCccc
Confidence            5667788888888888888888888889998 6789999999999999988766666665542211         11111


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhcc
Q 013611          408 AHLDYFYWLLAALSAGGLLAFLYFAKS  434 (439)
Q Consensus       408 ~~~~~~f~~~~~l~~l~~~i~~~~~~~  434 (439)
                      .++.....+.+++.+++.++..+..|.
T Consensus       174 ~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  174 NGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            145666677777777777776666665

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.65  E-value=0.46  Score=48.89  Aligned_cols=59  Identities=20%  Similarity=0.165  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHh
Q 013611          328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVS  386 (439)
Q Consensus       328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~  386 (439)
                      +...++...++.|+..++......-++...+|++.||.+..+..+...+|..+|..++.
T Consensus       115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l  173 (485)
T KOG0569|consen  115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL  173 (485)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc
Confidence            56778899999999999987777779999999999999999999999998888865543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=95.57  E-value=0.27  Score=48.17  Aligned_cols=116  Identities=21%  Similarity=0.225  Sum_probs=84.6

Q ss_pred             CCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCh
Q 013611          281 ITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK  360 (439)
Q Consensus       281 ~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~  360 (439)
                      ++..+.+..++++.+++..+=...                       +.+.+....++.|.|-....+-+...+-+.-|+
T Consensus        74 ~g~er~l~~~Llli~~G~~iR~~~-----------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk  130 (395)
T COG2807          74 FGEERSLFLALLLIAAGILIRSLG-----------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK  130 (395)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhcc-----------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc
Confidence            466777788887777765432221                       355577888888999988888888889999987


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611          361 ELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY  435 (439)
Q Consensus       361 ~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~  435 (439)
                      + .+.+||+|....++|+++++.+.--+.+..     ++|          .....+-+..++++.++++--..|+
T Consensus       131 ~-~~~mtglYs~sl~~~aaLaa~lavpla~~~-----~gW----------~~aL~~WAl~allAl~~WlPq~~r~  189 (395)
T COG2807         131 R-VGLMTGLYSTSLGAGAALAAALAVPLAQHS-----GGW----------RGALGFWALLALLALLIWLPQALRE  189 (395)
T ss_pred             c-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-----ccH----------HHHHHHHHHHHHHHHHHHhhhcccc
Confidence            6 688999999999999999998887776422     134          3445555677888877777664443

>TIGR01272 gluP glucose/galactose transporter

Probab=95.55  E-value=0.096  Score=50.89  Aligned_cols=62  Identities=8%  Similarity=0.022  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      +.+++++..++.|.|..+..+..+.++....|++.+++.+++...++++|..+||.+++.+.
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999999775

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.52  E-value=0.04  Score=56.02  Aligned_cols=120  Identities=16%  Similarity=0.176  Sum_probs=94.0

Q ss_pred             CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611          282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE  361 (439)
Q Consensus       282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~  361 (439)
                      ..++-+..|.+++++|.++++..+.                    .+...+.+..+++++|.++.-++......++-|++
T Consensus        90 G~~~tI~lGail~~iGh~~L~~~~~--------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~  149 (498)
T COG3104          90 GTRRTIVLGAILMAIGHLVLAISSV--------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKD  149 (498)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcccc--------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCC
Confidence            4556889999999999888886520                    12444678888889999999888888888887643


Q ss_pred             h--HHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013611          362 L--KSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR  437 (439)
Q Consensus       362 ~--~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~  437 (439)
                      .  |-...+++++..++|+.++|.+.+.+.+         |       .++...|.+.+..+.++.+.|++..|+++.
T Consensus       150 DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~---------~-------~g~~~gF~~aavGm~~gl~~f~~~~r~~~~  211 (498)
T COG3104         150 DPRRDGGFTLFYMGINIGSLIAPIITGLLAI---------N-------YGWHVGFGLAAVGMIIGLVIFLLGRRHVKG  211 (498)
T ss_pred             CcccCCCccEEEEEeehHHHHHHHHHHHHHH---------h-------hCHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence            2  5556888888999999999999998863         1       445778888899999999999988887754

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=95.21  E-value=0.39  Score=50.09  Aligned_cols=102  Identities=17%  Similarity=0.304  Sum_probs=75.9

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHH
Q 013611          285 QRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKS  364 (439)
Q Consensus       285 ~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g  364 (439)
                      +.+.+++++..++-+..++.                      .+++.+++...+.|++.............+..+++.|+
T Consensus       149 ~~~~~~~~~~~i~~~~~a~a----------------------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~  206 (521)
T KOG0255|consen  149 PVLLVSLLLFIIFGILTAFA----------------------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRG  206 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHh----------------------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhh
Confidence            45566666666555444444                      36888899999999999999888888999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 013611          365 FGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLA  427 (439)
Q Consensus       365 ~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i  427 (439)
                      .++.+ ......++.+++.+++.+..        +|          .+.++...+..++..+.
T Consensus       207 ~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------r~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  207 LALTL-GGFFFVGGLMLPAGAAYITR--------DW----------RWLFWIISIPSGLFLLL  250 (521)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------HHHHHHHHHHHHHHHHH
Confidence            99999 77777778888888787752        34          45566666655555444

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=94.56  E-value=1.4  Score=43.86  Aligned_cols=91  Identities=14%  Similarity=0.116  Sum_probs=75.8

Q ss_pred             CCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCh
Q 013611          281 ITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK  360 (439)
Q Consensus       281 ~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~  360 (439)
                      .+.++-+.+|+.++++++.+..-+...                   -++..++....+.+.|.++.-.+.+.++....|+
T Consensus        75 ~gyk~gi~lgL~l~avg~~lF~pAa~~-------------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~  135 (422)
T COG0738          75 LGYKAGIVLGLLLYAVGAALFWPAASS-------------------KSYGFFLVALFILASGIGLLETAANPYVTLLGKP  135 (422)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhh-------------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc
Confidence            356678899999999998887654321                   2455566777889999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          361 ELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       361 ~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                      +..+.=+.+....+.+|..+||.+++.+..
T Consensus       136 ~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         136 ESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999997754

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=93.86  E-value=2.3  Score=39.91  Aligned_cols=121  Identities=17%  Similarity=0.179  Sum_probs=77.8

Q ss_pred             CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611          282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE  361 (439)
Q Consensus       282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~  361 (439)
                      ++...+.+|.+...+|+.+....-.         +.+      ...+.|.+.+...+.+.|......+......++-|. 
T Consensus        64 gp~~~l~iG~~~~~~GY~~~~l~~~---------~~i------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-  127 (250)
T PF06813_consen   64 GPWVVLLIGAVLGFVGYGLLWLAVS---------GRI------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-  127 (250)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHh---------Ccc------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-
Confidence            4556678898888888877765531         100      123566666666777777776666655667788885 


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611          362 LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY  435 (439)
Q Consensus       362 ~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~  435 (439)
                      .||++.|+.-...++++++-..+...+.+                 .+...++.+++....+..++.....|..
T Consensus       128 ~RG~vvgilk~~~GLSaai~t~i~~~~f~-----------------~~~~~fll~la~~~~~v~l~~~~~vr~~  184 (250)
T PF06813_consen  128 SRGTVVGILKGFFGLSAAIFTQIYSAFFG-----------------DDPSSFLLFLAVLPAVVCLVAMFFVRPV  184 (250)
T ss_pred             ccCceehhhhHHHHhHHHHHHHHHHHHcC-----------------CChHHHHHHHHHHHHHHHHHHhhheecc
Confidence            69999999999999999986665555532                 1223455566655554444444444443

>PRK09848 glucuronide transporter; Provisional

Probab=93.83  E-value=0.19  Score=51.33  Aligned_cols=73  Identities=18%  Similarity=0.196  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhh-HhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQE-RRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNW  103 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~-~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~  103 (439)
                      +.+.+++..++.++|.++..+...++.+|..+.+|-+. .++++.+++.+.+...+|..+|+.+.+++.+..||
T Consensus       318 ~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        318 SLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            45567777888999999999999999999987654211 12258888999999999999999999988766666

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=93.70  E-value=7.3  Score=39.72  Aligned_cols=62  Identities=16%  Similarity=0.154  Sum_probs=48.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611          327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSII  388 (439)
Q Consensus       327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~  388 (439)
                      .+...++...++.=+|.-..-.....+.++.+|++.||+..|+-+..+++-..+.-.++-.+
T Consensus       354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45555666667777777777778888999999999999999999999998888766554444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=93.45  E-value=0.41  Score=48.33  Aligned_cols=167  Identities=17%  Similarity=0.110  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCC
Q 013611          200 KALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPS  279 (439)
Q Consensus       200 k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~  279 (439)
                      +++.+...+..+.-+.|....+..+.+.++. ..+..       -.+..+..-|+.-++.+|+.+...++...|+++|  
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~l-Gvphk-------~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR--  101 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSL-GVPHK-------WSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR--  101 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHc-CCCcc-------cccccccccccccceecccccccccccccccccc--
Confidence            3344444455556667776666555444322 11111       1234566678888999999999999988887544  


Q ss_pred             CCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC-CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhc
Q 013611          280 GITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV-TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQI  358 (439)
Q Consensus       280 ~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~a  358 (439)
                          +.-+..+-++.++++++.+++.-.    .  ....|++.. ..+-.+...++...+.-++.-...-+.-++..+.+
T Consensus       102 ----RPfI~~~s~~i~~~l~Lig~aaDi----g--~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~  171 (498)
T KOG0637|consen  102 ----RPFILAGSLLIAVSLFLIGYAADI----G--LLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLA  171 (498)
T ss_pred             ----cchHHHhhHHHHHHHhhhhhHhhh----h--HHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhc
Confidence                335677888888888877766421    1  112233221 11223333444555555555445555556677776


Q ss_pred             ChhhHHH-HHHHHHHHhhhhhhhhhHHHh
Q 013611          359 PKELKSF-GLSIYMSVLGVGGFLSSILVS  386 (439)
Q Consensus       359 P~~~~g~-~~gl~~~~~~iG~~ig~~l~~  386 (439)
                      -.+.|-+ +.+.+.++.++|+.+|-.+.+
T Consensus       172 ~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  172 RGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             cChhhhhccchhHHHHHHhcceeeeeccc
Confidence            5555555 999999999999999876655

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=93.36  E-value=1.6  Score=44.08  Aligned_cols=120  Identities=13%  Similarity=0.097  Sum_probs=75.1

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      ..|++.+.-+.-+.++....++    .+|+       +.+.-..+|.++.+++..+=.....              |-  
T Consensus        81 ~~wlsmIym~v~vp~gf~~mw~----ldk~-------GLR~a~llgt~ln~iGa~Ir~iss~--------------p~--  133 (480)
T KOG2563|consen   81 ADWLSMIYMVVSVPFGFAAMWI----LDKF-------GLRTALLLGTVLNGIGAWIRLISSL--------------PF--  133 (480)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHh----hccc-------chHHHHHHHHHHHHHHHHHhhhccC--------------cc--
Confidence            4566655555555554444554    3443       3445566677776666544333211              00  


Q ss_pred             CcchHH--HHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhcc
Q 013611          325 IPTSVW--WLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA  391 (439)
Q Consensus       325 ~~~~~~--~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~  391 (439)
                      .+...+  .....+.+.+.++.++..--.-.+..--|++.|+.+..+-.+.+.+|.++|..+-..+...
T Consensus       134 v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  134 VPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             ccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence            011233  4566777788888876433235677789999999999999999999999888777777643

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=93.13  E-value=0.28  Score=45.60  Aligned_cols=80  Identities=14%  Similarity=0.237  Sum_probs=65.7

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCC-CChhhHhhhhhhHHHHHH-HHHHHHHHHHHHHHHhhhc--ccchh
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDA-QNPQERRAKSSFFNWWYF-GISFGANSTILVVIYIQDN--LNWAL  105 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~-~~~~~~~~r~~~f~~~y~-~~nlG~~ig~~l~g~l~~~--~g~~~  105 (439)
                      .....+.+.|.+.|++.|...|...+++.+.+++ ++      |....+.... ...+|..+++.+++.+...  .+|++
T Consensus        92 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (338)
T COG0477          92 VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRA  165 (338)
T ss_pred             chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            4677888899999999999999999999999997 33      8889999988 5889999999888877654  68888


Q ss_pred             hhHHHHHHHH
Q 013611          106 GFGIPCAFMV  115 (439)
Q Consensus       106 ~F~i~~~~~~  115 (439)
                      .|.+......
T Consensus       166 ~~~~~~~~~~  175 (338)
T COG0477         166 AFLLAALLGL  175 (338)
T ss_pred             HHHHHHHHHH
Confidence            7766664443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=92.81  E-value=1.6  Score=44.78  Aligned_cols=64  Identities=14%  Similarity=0.206  Sum_probs=52.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcC-hhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIP-KELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP-~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                      ....+..+.|++.+++.-++.++-.+.....++ +++|....+..+...++|+.+...+...+..
T Consensus       110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~  174 (467)
T COG2211         110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK  174 (467)
T ss_pred             cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677888999999999988888788887776 7889999999999999998888777766653

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=92.74  E-value=4.4  Score=39.87  Aligned_cols=102  Identities=21%  Similarity=0.205  Sum_probs=65.6

Q ss_pred             ccC-CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCC-hhhHhhhhhhHHHHH-HHHHHHHHHHHHHHHHhhhc
Q 013611           24 SCS-PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQN-PQERRAKSSFFNWWY-FGISFGANSTILVVIYIQDN  100 (439)
Q Consensus        24 ~~~-~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~-~~~~~~r~~~f~~~y-~~~nlG~~ig~~l~g~l~~~  100 (439)
                      +|. -...+.+.++++|++-|+++....++-.+-......+++ |++  .+..-|+... ..+.+-+.++-+++-++.+.
T Consensus       112 scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~  189 (354)
T PF05631_consen  112 SCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADW  189 (354)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence            344 445578999999999999999988877765544443332 221  1444555444 23334455555666666665


Q ss_pred             ccc--hhhhHHHHHHHHHHHHHHHhcCcc
Q 013611          101 LNW--ALGFGIPCAFMVAALVLFLLGTKT  127 (439)
Q Consensus       101 ~g~--~~~F~i~~~~~~i~~~l~~~~~~~  127 (439)
                      .+.  ...|..+.+...++.++....+++
T Consensus       190 ~~~g~vaPF~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  190 FGFGPVAPFDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             hCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence            544  789999988888877766555553

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.67  E-value=4.7  Score=38.21  Aligned_cols=44  Identities=14%  Similarity=0.155  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhh
Q 013611          333 IPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGV  376 (439)
Q Consensus       333 i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~i  376 (439)
                      .+.+.+.-.+-++.+|...-+-.+..|++.|++.|..+-.--++
T Consensus       348 ~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLni  391 (454)
T KOG4332|consen  348 LIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNI  391 (454)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhH
Confidence            45566666778889999998899999999999988776554444

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=90.94  E-value=4.1  Score=41.13  Aligned_cols=31  Identities=10%  Similarity=-0.046  Sum_probs=25.2

Q ss_pred             ccchhhhhhHHHHHHHHHHhhhhhhhhhccc
Q 013611          243 IPAASLQLFIGIGIITFIPIYDCIFVPITRY  273 (439)
Q Consensus       243 ~~~~~~~~in~~~iii~~pl~~~~~~~~~~k  273 (439)
                      ...|.+-+++.+.-++..|+.+.+.+|+..|
T Consensus        43 ~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~k   73 (412)
T PF01306_consen   43 TEIGIIFSAGSLFALLAQPVYGFISDKLGLK   73 (412)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhcchhhhh
Confidence            3456788899999999999999988876654

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=90.71  E-value=0.38  Score=45.67  Aligned_cols=81  Identities=9%  Similarity=0.016  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc---chhhhHHHH
Q 013611           35 FIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN---WALGFGIPC  111 (439)
Q Consensus        35 ~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g---~~~~F~i~~  111 (439)
                      =++++.++|+...+.--...+.++...|+++      .+++++..+.-.|+|-++-|++.|++.+.-|   |--+|.+..
T Consensus       355 Py~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~  428 (459)
T KOG4686|consen  355 PYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII  428 (459)
T ss_pred             HHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence            3567778888888776668888899999877      9999999999999999999999999988533   444555544


Q ss_pred             HHH-HHHHHHH
Q 013611          112 AFM-VAALVLF  121 (439)
Q Consensus       112 ~~~-~i~~~l~  121 (439)
                      ..+ +++..+.
T Consensus       429 ~~~aL~svgil  439 (459)
T KOG4686|consen  429 GLMALTSVGIL  439 (459)
T ss_pred             HHHHHHHHHHH
Confidence            443 3344333

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=90.19  E-value=8.8  Score=39.52  Aligned_cols=70  Identities=17%  Similarity=0.190  Sum_probs=52.6

Q ss_pred             HhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 013611          346 TIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGL  425 (439)
Q Consensus       346 ~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~  425 (439)
                      +....++++.+.+..+.|....|+.+.....+..+++++++.....                .++...|++.++..+++.
T Consensus       129 ~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~----------------~~~a~~f~ia~~~~~~~~  192 (463)
T KOG2816|consen  129 IFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF----------------LGIALVFLIAAASGILSL  192 (463)
T ss_pred             hhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----------------cCchHHHHHHHHHHHHHH
Confidence            4566668899999999999999999999999999999999988632                334555666666555554


Q ss_pred             HHHHHH
Q 013611          426 LAFLYF  431 (439)
Q Consensus       426 ~i~~~~  431 (439)
                      +..++.
T Consensus       193 ~y~~~~  198 (463)
T KOG2816|consen  193 LYMLLF  198 (463)
T ss_pred             HHHhhc
Confidence            444433

>TIGR00788 fbt folate/biopterin transporter

Probab=90.06  E-value=0.79  Score=47.31  Aligned_cols=71  Identities=7%  Similarity=-0.073  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-----chhhhHH
Q 013611           35 FIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN-----WALGFGI  109 (439)
Q Consensus        35 ~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g-----~~~~F~i  109 (439)
                      ....-++.+++.|........+..+..|++.      +++.++++....|+|..+|+.+++++.+..|     ++..|..
T Consensus       354 ~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~  427 (468)
T TIGR00788       354 VLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLL  427 (468)
T ss_pred             eeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHH
Confidence            3444566777777877778999999999887      8999999999999999999999999999887     7765554


Q ss_pred             HH
Q 013611          110 PC  111 (439)
Q Consensus       110 ~~  111 (439)
                      ..
T Consensus       428 i~  429 (468)
T TIGR00788       428 IL  429 (468)
T ss_pred             HH
Confidence            33

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=89.21  E-value=0.65  Score=46.52  Aligned_cols=79  Identities=15%  Similarity=0.156  Sum_probs=64.7

Q ss_pred             HHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-ccchhhhHHHHHHHH
Q 013611           37 FSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN-LNWALGFGIPCAFMV  115 (439)
Q Consensus        37 ~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~-~g~~~~F~i~~~~~~  115 (439)
                      +.=+++|+..|..+....++.++..|+++      -+++|+++.+.--.++.+||.+.+.+.+. -+-|..+..-.+...
T Consensus       346 i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~  419 (438)
T COG2270         346 ILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLL  419 (438)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            33367999999999999999999999988      67899999999999999999999988763 345666666666666


Q ss_pred             HHHHHH
Q 013611          116 AALVLF  121 (439)
Q Consensus       116 i~~~l~  121 (439)
                      +++++.
T Consensus       420 iGl~~L  425 (438)
T COG2270         420 IGLLLL  425 (438)
T ss_pred             hhHhhE
Confidence            666554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=88.65  E-value=4.6  Score=41.23  Aligned_cols=88  Identities=20%  Similarity=0.226  Sum_probs=56.4

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHH---HhhcCh
Q 013611          284 LQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFF---YDQIPK  360 (439)
Q Consensus       284 ~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~---~~~aP~  360 (439)
                      +.-+.+|.++.+++...++.....                  ..+........++..+|..+.-+..-+..   .+.-|.
T Consensus        59 ~~Y~~i~~~~~~~~~~~~~~~~~~------------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~  120 (433)
T PF03092_consen   59 KPYMIIGWLLGAVSALVLALLPAS------------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE  120 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccc------------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence            345566766665555555543210                  12333444555667777777644443333   344666


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          361 ELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       361 ~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                      + +|..++..+..+.+|+.++..++|...+
T Consensus       121 ~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~  149 (433)
T PF03092_consen  121 S-RGDLQSFVWGVRSVGSLVGSLLSGPLLD  149 (433)
T ss_pred             h-hHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            6 8999999999999999999999887754

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=88.26  E-value=35  Score=35.46  Aligned_cols=41  Identities=12%  Similarity=0.230  Sum_probs=35.1

Q ss_pred             hhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 013611           53 TQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD   99 (439)
Q Consensus        53 ~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~   99 (439)
                      -.++..+.++.+|      =.|.++.+..+.|+|.+++..+..++.+
T Consensus       165 FW~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  165 FWGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677788888766      5689999999999999999998888877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=87.45  E-value=2.4  Score=43.13  Aligned_cols=123  Identities=16%  Similarity=0.122  Sum_probs=79.1

Q ss_pred             cccchhhhhhHHHH---HHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 013611          242 KIPAASLQLFIGIG---IITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLI  318 (439)
Q Consensus       242 ~~~~~~~~~in~~~---iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~  318 (439)
                      ..|++....+|...   .++.+.+++++-+++.||+           ....-++++.++-++.+...          +  
T Consensus        80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~-----------vYG~~liImIi~t~~~~~s~----------~--  136 (538)
T KOG0252|consen   80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK-----------VYGKELIIMIICSALSGLSV----------G--  136 (538)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh-----------hhhHHHHHHHHHHHHhccCC----------C--
Confidence            36776666666554   4455555555555444432           33444555555544322211          1  


Q ss_pred             CCCCCCCc-chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhcc
Q 013611          319 DKPNVTIP-TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA  391 (439)
Q Consensus       319 ~~~~~~~~-~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~  391 (439)
                          .+.+ --.+|+...-.++|+|-+.=-|-...+....+-++.||...+..+.++++|-..|..+.-.+...
T Consensus       137 ----~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~  206 (538)
T KOG0252|consen  137 ----TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAI  206 (538)
T ss_pred             ----CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHH
Confidence                0111 12577888889999999997777767888889999999999999999999888877666555433

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=87.25  E-value=29  Score=34.76  Aligned_cols=59  Identities=12%  Similarity=0.149  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611          332 LIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE  390 (439)
Q Consensus       332 ~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~  390 (439)
                      .+.+|.+.+.-.-..+++.+++..+.+|+...|++|.+.+.-.++|+.-=..+...+.+
T Consensus       372 ~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D  430 (510)
T KOG3574|consen  372 LITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD  430 (510)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence            44556666666666688888999999999999999999999999998877666666653

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=87.19  E-value=0.02  Score=58.44  Aligned_cols=84  Identities=19%  Similarity=0.244  Sum_probs=64.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHH
Q 013611          286 RIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSF  365 (439)
Q Consensus       286 ~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~  365 (439)
                      -+.++.++..++.++..+...                   ..+.+.+.+..++.|+|-+...+....++.+.+|++.||.
T Consensus        78 ~~~~~~~~~~i~~~~~~~~~~-------------------~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~  138 (451)
T PF00083_consen   78 ALIISALLMIIGSILIAFAPS-------------------YNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGF  138 (451)
T ss_pred             ccccccccccccccccccccc-------------------cccccccccccccccccccccccccccccccccccccccc
Confidence            445566666666655554420                   0257778888999999999988888889999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhHHHhhh
Q 013611          366 GLSIYMSVLGVGGFLSSILVSII  388 (439)
Q Consensus       366 ~~gl~~~~~~iG~~ig~~l~~~~  388 (439)
                      ..++......+|..++..+.-.+
T Consensus       139 ~~~~~~~~~~~G~~~~~~~~~~~  161 (451)
T PF00083_consen  139 LSSLFQLFWALGILLASLIGYIV  161 (451)
T ss_pred             ccccccccccccccccccccccc
Confidence            99999999999988877664433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=87.15  E-value=0.69  Score=47.73  Aligned_cols=93  Identities=10%  Similarity=-0.002  Sum_probs=75.8

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHH-HHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGI-SFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~-nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      +.|.....-++.|+..|.+..++.+.+.+..||+-      |+++-++..... .+|--+|.++||.+.+.++=+..|.+
T Consensus       458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~  531 (618)
T KOG3762|consen  458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRI  531 (618)
T ss_pred             CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHH
Confidence            45566666789999999999999999999999987      777777766544 38888888999999999998999999


Q ss_pred             HHHHHHHHHHHHHhcCccee
Q 013611          110 PCAFMVAALVLFLLGTKTYR  129 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~  129 (439)
                      .++..++.+++++...+..+
T Consensus       532 ~giAcl~~l~~~~~iq~~l~  551 (618)
T KOG3762|consen  532 FGIACLVTLALFISIQLLLK  551 (618)
T ss_pred             HHHHHHHHHHHHHHhhhhhc
Confidence            99888888887766655443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=83.44  E-value=10  Score=40.15  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=44.8

Q ss_pred             HHHHHHHhhhhhHHHHHHhhccc-CCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHH
Q 013611          213 LVYAIVFAQYTTFFTKQGATMDR-TITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGM  291 (439)
Q Consensus       213 ~~~~~~~~q~~~~~~~~~~~~~~-~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~  291 (439)
                      .+.|..+.+..+.+..+...+.. +.. ++.+-.+.....|.+.++++.+......++.       |.+ +  .+..++-
T Consensus       195 fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~-------p~g-s--p~t~i~~  263 (571)
T KOG1237|consen  195 FFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGFGIPTVLNALAILIFLPGFPFYRYKK-------PRG-S--PKTRIGQ  263 (571)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhhhcc-cceeeccHHHHHHHHHHHHHHcCceeEEeeC-------CCC-C--chhHHHH
Confidence            44566666655555444432221 222 6667778888899999998876655543222       211 2  4566777


Q ss_pred             HHHHHHHHHH
Q 013611          292 LLSSISMVVA  301 (439)
Q Consensus       292 ~l~~i~~~~~  301 (439)
                      ++.+.....-
T Consensus       264 Vlvaa~~k~~  273 (571)
T KOG1237|consen  264 VLVAAAFKRK  273 (571)
T ss_pred             HHHHHHHHHh
Confidence            7766665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	439
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		1e-08

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 145/388 (37%), Gaps = 65/388 (16%)
Query: 25  CSPHHFQIIV------FIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW 78
           C  H F  I       F   L+L+A+G GG KP   +F  DQFD  N   +      F+ 
Sbjct: 96  CVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDM 152
Query: 79  WYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQRN 138
           +YF I+FG+    L +  +  N   A+ FGIP             G K Y   +  + ++
Sbjct: 153 FYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRY-IHMPPEPKD 211
Query: 139 PFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNK-----ALLATPDVSLEDGKLCTL 193
           P       F+  I++   T   E +         +       AL+  P + +  G  C +
Sbjct: 212 PHG-----FLPVIRSALLT-KVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAM 265
Query: 194 ------------------------EDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQ 229
                                     V+  +++LR++ ++A    +  +F Q  + +  Q
Sbjct: 266 VLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQ 325
Query: 230 GATMDRTITRSIKIPAASLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGA 289
              M +        PA    L               ++  I R   +    +T L+++GA
Sbjct: 326 ANDMVKPQWFE---PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK----LTALRKMGA 378
Query: 290 GMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG 349
           G+ ++ +S +V   +++          ++D  +     S++W I  Y L    +V     
Sbjct: 379 GIAITGLSWIVVGTIQL----------MMDGGSA---LSIFWQILPYALLTFGEVLVSAT 425
Query: 350 LQEFFYDQIPKELKSFGLSIYMSVLGVG 377
             EF Y Q PK +K   +S +   + VG
Sbjct: 426 GLEFAYSQAPKAMKGTIMSFWTLSVTVG 453
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	439
2xut_A	524	Proton/peptide symporter family protein; transport	1e-103
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	5e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  316 bits (811), Expect = e-103
 Identities = 84/430 (19%), Positives = 152/430 (35%), Gaps = 54/430 (12%)

Query: 30  FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANS 89
             +  F   L+L+A+G GG KP   +F  DQFD  N          F+ +YF I+FG+  
Sbjct: 107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTINFGSFF 163

Query: 90  TILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVV 149
             L +  +  N   A+ FGIP   M  A V F LG K Y                 V   
Sbjct: 164 ASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEP--KDPHGFLPVIRS 221

Query: 150 AIKTRKATLASEDEA----------------QSSQQFKFLNKALLATPDVSLEDG----- 188
           A+ T+     +                     +      L  A++               
Sbjct: 222 ALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLE 281

Query: 189 ---KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPA 245
              K      V+  +++LR++ ++A    +  +F Q  + +  Q   M     +      
Sbjct: 282 RARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM----VKPQWFEP 337

Query: 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVE 305
           A +Q    + ++  IP  + +  P         +    L+++GAG+ ++ +S +V   ++
Sbjct: 338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLT---ALRKMGAGIAITGLSWIVVGTIQ 394

Query: 306 IKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSF 365
           +     +               S++W I  Y L    +V       EF Y Q PK +K  
Sbjct: 395 LMMDGGS-------------ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGT 441

Query: 366 GLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGL 425
            +S +   + VG     +    +   T     +      ++      F++  A  +    
Sbjct: 442 IMSFWTLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQMFFF--AGFAILAA 496

Query: 426 LAFLYFAKSY 435
           + F  +A+SY
Sbjct: 497 IVFALYARSY 506

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 85.2 bits (211), Expect = 5e-18
 Identities = 61/411 (14%), Positives = 133/411 (32%), Gaps = 65/411 (15%)

Query: 35  FIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVV 94
              S+ L+ IG G  KP         +D  + +    + + F+ + FGI+ GA    L+V
Sbjct: 111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAPLIV 166

Query: 95  IYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGR--------- 145
              Q+   + + F +    M   L+++  G K        +  +P A             
Sbjct: 167 GAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSL 226

Query: 146 ---VFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKAL 202
               F+  I        +   A  +          +      +   K+       E   +
Sbjct: 227 AVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKV----TSTEHLRV 282

Query: 203 LRLIPIWATCLVYAIVFAQYTT---FFTKQGATMDRTITRSIKIPAASLQLFIGIGIITF 259
           +  IP++   +++  +  Q +     F  +   +D +       P +  Q    + I+ +
Sbjct: 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAE--RVDSSW-----FPVSWFQSLNPLFIMLY 335

Query: 260 IPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLID 319
            P +  ++    +     PS      +   G++ + +S ++ A+       + K      
Sbjct: 336 TPFFAWLWTAWKKN---QPS---SPTKFAVGLMFAGLSFLLMAIPGALYGTSGK------ 383

Query: 320 KPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGF 379
                   S  WL+  + L  + ++              PK   S  +S++     VG  
Sbjct: 384 -------VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA 436

Query: 380 LSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLY 430
           L++ LV++ N  +                 + YF +        G++    
Sbjct: 437 LNAQLVTLYNAKS----------------EVAYFSYFGLGSVVLGIVLVFL 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 61/452 (13%), Positives = 126/452 (27%), Gaps = 133/452 (29%)

Query: 14  SDCQNN--NTAKSCSPHHFQIIVFIFSL-----------YLVAIGQGGH-KPCTQAFGAD 59
            + ++   N  +  + ++   +     L            ++  G  G  K         
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL---- 168

Query: 60  QFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALV 119
             D     + + K  F  +W   ++    ++   V+ +   L            +     
Sbjct: 169 --DVCLSYKVQCKMDFKIFW---LNLKNCNSPETVLEMLQKL---------LYQIDPNWT 214

Query: 120 LFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLN---KA 176
                +   +  I S Q    A + R+     K  +  L      Q+++ +   N   K 
Sbjct: 215 SRSDHSSNIKLRIHSIQ----AELRRLL--KSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 177 LLATPDVSLED------GKLCTLEDV------EEAKALLRLIPIWATCLVYAIVFAQYTT 224
           LL T    + D          +L+        +E K+L                  +Y  
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL----------------LLKYLD 312

Query: 225 FFTKQGATMDRTITRSIKIPAASLQ---LFIGIGIITFIPIYDCIFVPITRYFTQNPSGI 281
                         R   +P   L      + I               I        +  
Sbjct: 313 -------------CRPQDLPREVLTTNPRRLSI---------------IAESIRDGLATW 344

Query: 282 TMLQRIGAGMLLSSISMVVAAL--VEIKRLETAKEYGLIDKPNVTIPTSV----WWLIPQ 335
              + +    L + I   +  L   E +++       +    +  IPT +    W+ + +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKM--FDRLSVFPP-SAHIPTILLSLIWFDVIK 401

Query: 336 YLLCGIADVFTIVGLQEFF-YDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEAT-- 392
                  DV  +V   +   Y  + K+ K   +SI             + V + NE    
Sbjct: 402 S------DVMVVV--NKLHKYSLVEKQPKESTISIP-------SIYLELKVKLENEYALH 446

Query: 393 -----SRDGGDSWFADNLNRAHLD-YFYWLLA 418
                  +   ++ +D+L   +LD YFY  + 
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	439
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.88
2xut_A	524	Proton/peptide symporter family protein; transport	99.87
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.76
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.68
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.55
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.33
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.3
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.68
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.62
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.55
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.4
2xut_A	524	Proton/peptide symporter family protein; transport	98.4
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.62
2cfq_A	417	Lactose permease; transport, transport mechanism,	96.92

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.88  E-value=3.7e-21  Score=196.62  Aligned_cols=352  Identities=17%  Similarity=0.235  Sum_probs=228.4

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.++++|++.|+|.|...|+..++++|++|+++.+    |++++++++.+.++|..+||.+++++.+..||++.|++
T Consensus       106 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~  181 (491)
T 4aps_A          106 FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL  181 (491)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            45678999999999999999999999999999987633    77899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCc--chhHHHH-------------HHH-HhHhhccccCcchhhcccccchhh
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNP--FARIGRV-------------FVV-AIKTRKATLASEDEAQSSQQFKFL  173 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~-------------l~~-a~~~~~~~~~~~~~~~~~~~~~~~  173 (439)
                      .++..+++.+++++..++...++++.++++  ..+..+.             .+. .......           +..+..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~-----------~~~~~~  250 (491)
T 4aps_A          182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWN-----------SLPAYI  250 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSC-----------CTTHHH
T ss_pred             HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCc-----------ccccch
Confidence            888777777665544332221111100111  1111110             000 0000000           000000


Q ss_pred             hhhh---hcCCC-CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhh
Q 013611          174 NKAL---LATPD-VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQ  249 (439)
Q Consensus       174 ~~~~---~~~~~-~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~  249 (439)
                      ....   ..... .....+... .....++++..+...+++....++..+.+..+.++.+..+.- +.  + ..+.+.+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~  325 (491)
T 4aps_A          251 NLLTIVAIAIPVFYFAWMISSV-KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERV-DS--S-WFPVSWFQ  325 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSC-CC--S-SSCSGGGT
T ss_pred             hhhhHHHHHHHHHHHHHHhhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHh-cc--C-ccCHHHHh
Confidence            0000   00000 000000000 011233444555666777778888888888777665543211 11  1 25567888


Q ss_pred             hhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchH
Q 013611          250 LFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSV  329 (439)
Q Consensus       250 ~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (439)
                      .++++..++..++.+++.+++.+|.      .....++.+|.++.++++.++......       .+      .+.+.+.
T Consensus       326 ~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~  386 (491)
T 4aps_A          326 SLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGAL-------YG------TSGKVSP  386 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHH-------CC------CCTTCCT
T ss_pred             ccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHh-------cC------CCCCccH
Confidence            8999999999999999877665543      345677889999999988877765421       00      0012467


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccch
Q 013611          330 WWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAH  409 (439)
Q Consensus       330 ~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~  409 (439)
                      +++++.+++.++|++...+..++++.+..|++.||+++|+++...++|+.+++.+.+.+.+.                 +
T Consensus       387 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~  449 (491)
T 4aps_A          387 LWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------S  449 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------S
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------c
Confidence            78888999999999999888889999999999999999999999999999999998877531                 2


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013611          410 LDYFYWLLAALSAGGLLAFLYFAKSYNR  437 (439)
Q Consensus       410 ~~~~f~~~~~l~~l~~~i~~~~~~~~~~  437 (439)
                      +...|...+++++++.++.+...++.++
T Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (491)
T 4aps_A          450 EVAYFSYFGLGSVVLGIVLVFLSKRIQG  477 (491)
T ss_dssp             TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778888888888887777665544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.87  E-value=5.1e-22  Score=204.83  Aligned_cols=363  Identities=24%  Similarity=0.378  Sum_probs=219.8

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhh---hhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhh
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS---SFFNWWYFGISFGANSTILVVIYIQDNLNWALGF  107 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~---~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F  107 (439)
                      +.+.++++|++.|+|.|...|+..+++.|++|+++      |+   ..+++++.+.++|.++||.+++++.+..+|++.|
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f  181 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF  181 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            67789999999999999999999999999999877      64   4567799999999999999999999989999999


Q ss_pred             HHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCc-----------------ch--------
Q 013611          108 GIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLAS-----------------ED--------  162 (439)
Q Consensus       108 ~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~-----------------~~--------  162 (439)
                      ++.++..+++.+++++.+++.+.++|++  ++..+..+.+..+.+......+.                 ..        
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (524)
T 2xut_A          182 GIPGVLMFVATVFFWLGRKRYIHMPPEP--KDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVA  259 (524)
T ss_dssp             HHHHHHHHHHHHHHHSSSSSCCCCC----------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSH
T ss_pred             HHHHHHHHHHHHHHHHhcccccccCCCC--ccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhh
Confidence            9998887777766655444333222221  11111111111111110000000                 00        


Q ss_pred             --------hhcccccchh--hhhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh
Q 013611          163 --------EAQSSQQFKF--LNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGAT  232 (439)
Q Consensus       163 --------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~  232 (439)
                              ..+......|  .+..+           ..++..+.+++++..+...++.....++..+.+..+.+..+..+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (524)
T 2xut_A          260 GLCCAMVLVMGFVGAGASLQLERAR-----------KSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND  328 (524)
T ss_dssp             HHHHHHHHHHHHHHTGGGTHHHHSC-----------CSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH
T ss_pred             hhhhhhhhhhcccccchhhHHhhhh-----------ccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh
Confidence                    0000000011  11100           00001111233444455556666666777777777777666544


Q ss_pred             cccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013611          233 MDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETA  312 (439)
Q Consensus       233 ~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~  312 (439)
                      ++..   .+ .+.+.+..++++..++..|+.+++..|..+|+..+   .+..+++.+|+++.+++++++...+...    
T Consensus       329 ~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~----  397 (524)
T 2xut_A          329 MVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM----  397 (524)
T ss_dssp             SCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT----
T ss_pred             cCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence            4322   11 35677788888888888899988876666654322   3566778888888888877665442100    


Q ss_pred             hhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccc
Q 013611          313 KEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEAT  392 (439)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~  392 (439)
                            +   .....+.+++++.+++.++|++...+..++++.+.+|+++||+++|+++...++|+.+|+.+.+.+.+..
T Consensus       398 ------~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~  468 (524)
T 2xut_A          398 ------D---GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT  468 (524)
T ss_dssp             ------T---TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH
T ss_pred             ------c---CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                  0   0012467788889999999999999999999999999999999999999999999999999999875321


Q ss_pred             cCCCCCCCCCC-CcccchhhHHHHHHHHHHHHHHHHHHHHhccCccC
Q 013611          393 SRDGGDSWFAD-NLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNRE  438 (439)
Q Consensus       393 ~~~~~~~~~~~-~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~~  438 (439)
                      .    .+|.++ +.+.  ..+.|++.+++++++.+++++..++++++
T Consensus       469 ~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (524)
T 2xut_A          469 V----TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQ  509 (524)
T ss_dssp             H----HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC---------
T ss_pred             c----ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            0    112211 1111  12337778888888888887777766543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.76  E-value=6.3e-17  Score=162.80  Aligned_cols=313  Identities=10%  Similarity=-0.001  Sum_probs=188.9

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-chhhhH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN-WALGFG  108 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g-~~~~F~  108 (439)
                      .+.+.++++|++.|+|.|...|...+++.|++|+++      |++++++...+.++|.++||.+++++.+..+ ||+.|+
T Consensus       117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~  190 (451)
T 1pw4_A          117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY  190 (451)
T ss_dssp             SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred             ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            356678999999999999999999999999999876      9999999999999999999999999888888 999999


Q ss_pred             HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611          109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG  188 (439)
Q Consensus       109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (439)
                      +.++..++..++.++..++.+..+...+++.                        .+..+..+.-++...      +   
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~------~---  237 (451)
T 1pw4_A          191 MPAFCAILVALFAFAMMRDTPQSCGLPPIEE------------------------YKNDYPDDYNEKAEQ------E---  237 (451)
T ss_dssp             HHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT------------------------TCCC---------------------
T ss_pred             HHHHHHHHHHHHHHhhccCCHhhcCCCChhh------------------------hcccccccchhhhhc------c---
Confidence            9887766655544332222111100000000                        000000000000000      0   


Q ss_pred             CCCchhhHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhh
Q 013611          189 KLCTLEDVEEAKAL---LRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDC  265 (439)
Q Consensus       189 ~~~~~~~v~~~k~~---~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~  265 (439)
                      ...  .+.. .+..   ..+..+.+........+....+.++.   .+....| ......+.+..+..+..++..++.++
T Consensus       238 ~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~  310 (451)
T 1pw4_A          238 LTA--KQIF-MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT---YLKEVKH-FALDKSSWAYFLYEYAGIPGTLLCGW  310 (451)
T ss_dssp             -CC--THHH-HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH---HBTTBSC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc--ccch-HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000  0000 0111   11122222222232322222233332   2222222 11222345666666666776666666


Q ss_pred             hhhhhcccccCCCCCCCchhHHhHHHHHHH-HHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 013611          266 IFVPITRYFTQNPSGITMLQRIGAGMLLSS-ISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADV  344 (439)
Q Consensus       266 ~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~  344 (439)
                      +.+++.+         +.++.+.++.++.. +++.++....                    ..+.++.++..++.|++..
T Consensus       311 l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~  361 (451)
T 1pw4_A          311 MSDKVFR---------GNRGATGVFFMTLVTIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIY  361 (451)
T ss_dssp             HHHHTST---------TCHHHHHHHHHHHHHHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhc---------CCchhHHHHHHHHHHHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHh
Confidence            6543311         22234444544443 4443333210                    1245666677778888888


Q ss_pred             HHhhhhHHHHHhhcChhhHHHHHHHHHHHhhh-hhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHH
Q 013611          345 FTIVGLQEFFYDQIPKELKSFGLSIYMSVLGV-GGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAG  423 (439)
Q Consensus       345 l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~i-G~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l  423 (439)
                      ...+....++.+..|++.||+++|+.+...++ |+.+++.+.+.+.+..                ++...|+..+++.++
T Consensus       362 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~  425 (451)
T 1pw4_A          362 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSIL  425 (451)
T ss_dssp             HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHH
Confidence            88888788999999999999999999999999 9999999999886421                245677778888888


Q ss_pred             HHHHHHHHhc
Q 013611          424 GLLAFLYFAK  433 (439)
Q Consensus       424 ~~~i~~~~~~  433 (439)
                      +.++.+...+
T Consensus       426 ~~~~~~~~~~  435 (451)
T 1pw4_A          426 AVILLIVVMI  435 (451)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8777666543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.68  E-value=4e-15  Score=149.12  Aligned_cols=265  Identities=12%  Similarity=0.065  Sum_probs=162.8

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-hccc-----
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ-DNLN-----  102 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~-~~~g-----  102 (439)
                      ..+.+.++++|++.|+|.|...|...+++.+++|+++      |++++++...+.++|.++||.+++++. +..+     
T Consensus       114 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  187 (438)
T 3o7q_A          114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD  187 (438)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHH
T ss_pred             cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            3467889999999999999999999999999999988      999999999999999999999999998 5554     


Q ss_pred             --------------------chhhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcch
Q 013611          103 --------------------WALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASED  162 (439)
Q Consensus       103 --------------------~~~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~  162 (439)
                                          ||+.|++.++..++..+++++.+.  ++.+++.+++                        
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~------------------------  241 (438)
T 3o7q_A          188 VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSDNHSD------------------------  241 (438)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTTCCCC------------------------
T ss_pred             ccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Cccccccccc------------------------
Confidence                                999998777665555544433211  1111100000                        


Q ss_pred             hhcccccchhhhhhhhcCCCCCCCCCCCCchhhHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCC
Q 013611          163 EAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALL---RLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITR  239 (439)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~---~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~  239 (439)
                          ++.                       .+..++.+..+   ++....+....+...+....+..+...  .+...| 
T Consensus       242 ----~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g-  291 (438)
T 3o7q_A          242 ----AKQ-----------------------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYA--VEEIPG-  291 (438)
T ss_dssp             ----SST-----------------------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHSTT-
T ss_pred             ----ccc-----------------------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCC-
Confidence                000                       00001111111   111111122222222222222222220  111111 


Q ss_pred             CccccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 013611          240 SIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLID  319 (439)
Q Consensus       240 g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  319 (439)
                      -.....+.+..+..+..++..++.+++.+++           +.++.+.++.++.++++.+..+.               
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-----------~~~~~~~~~~~~~~~~~~~~~~~---------------  345 (438)
T 3o7q_A          292 MTAGFAANYLTGTMVCFFIGRFTGTWLISRF-----------APHKVLAAYALIAMALCLISAFA---------------  345 (438)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------CHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cchHHHHHHHHHHHHHHHHHHHc---------------
Confidence            1122334555566666666666666655432           33345566666666665554432               


Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhcc
Q 013611          320 KPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA  391 (439)
Q Consensus       320 ~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~  391 (439)
                             .+. +.+...++.+++.....+....++.+..|++ +++++++.. ...+|+.+++.+.+.+.+.
T Consensus       346 -------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~  407 (438)
T 3o7q_A          346 -------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA  407 (438)
T ss_dssp             -------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred             -------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence                   122 2344557788888888888888889999977 999999887 6779999999999988754

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.55  E-value=4e-15  Score=146.34  Aligned_cols=264  Identities=8%  Similarity=-0.012  Sum_probs=159.3

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611           30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI  109 (439)
Q Consensus        30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i  109 (439)
                      .+.+.+++.|++.|++.+...|...+++.|.+|+++      |+++++++..+.++|..+||.+++++.+..+||+.|++
T Consensus        86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  159 (375)
T 2gfp_A           86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF  159 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence            467889999999999999999999999999999887      99999999999999999999999999998999999998


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      .++..++..+..+.   ..++++++++++                            ++                  ...
T Consensus       160 ~~~~~~~~~~~~~~---~~~~~~~~~~~~----------------------------~~------------------~~~  190 (375)
T 2gfp_A          160 LLVLCAGVTFSMAR---WMPETRPVDAPR----------------------------TR------------------LLT  190 (375)
T ss_dssp             HHHHHHHHHCCCCC---SSCCCSTTTCCC----------------------------CC------------------TTT
T ss_pred             HHHHHHHHHHHHHH---HCcccCCCCccc----------------------------cc------------------HHH
Confidence            88655554432222   111111111000                            00                  000


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611          190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP  269 (439)
Q Consensus       190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~  269 (439)
                      ..  .+..+.+++....   +........+....+.++.   ......+ ......+.+..+..+..++..++.+++   
T Consensus       191 ~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~g-~~~~~~g~~~~~~~~~~~~~~~~~~~l---  258 (375)
T 2gfp_A          191 SY--KTLFGNSGFNCYL---LMLIGGLAGIAAFEACSGV---LMGAVLG-LSSMTVSILFILPIPAAFFGAWFAGRP---  258 (375)
T ss_dssp             CS--THHHHHHHHHHHH---HHHHHHHHHHHHHHHHCSC---SSHHHHH-HHHHHHHHHHHTHHHHHHHHHHHHHTT---
T ss_pred             HH--HHHhcCcchHHHH---HHHHHHHHHHHHHHHHHHH---HHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            00  1112222222221   1111122211111111110   0000010 001122344555555555554444443   


Q ss_pred             hcccccCCCCCCCchhHHhHHHHH-HHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611          270 ITRYFTQNPSGITMLQRIGAGMLL-SSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV  348 (439)
Q Consensus       270 ~~~k~~~~~~~~~~~~~i~iG~~l-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~  348 (439)
                       .+|.       +.  ++.++..+ ..++..........                  ..+.+..+...++.+++.+...+
T Consensus       259 -~~r~-------~~--~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~  310 (375)
T 2gfp_A          259 -NKRF-------ST--LMWQSVICCLLAGLLMWIPDWFG------------------VMNVWTLLVPAALFFFGAGMLFP  310 (375)
T ss_dssp             -TTHH-------HH--HHHHHHHHHHHTSSSSSHHHHHH------------------HHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             -HHHH-------HH--HHHHHHHHHHHHHHHHHHHhhhc------------------cccHHHHHHHHHHHHHHHHHhhH
Confidence             2322       11  34444443 33332221111100                  02455566778889999999988


Q ss_pred             hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      .....+.+..| +.||+++|+.+...++|+.+++.+.+.+.
T Consensus       311 ~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  350 (375)
T 2gfp_A          311 LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP  350 (375)
T ss_dssp             TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred             HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88899999999 89999999999999999999999988775

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.33  E-value=8.5e-11  Score=119.45  Aligned_cols=84  Identities=19%  Similarity=0.227  Sum_probs=69.9

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc--------
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN--------  100 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~--------  100 (439)
                      ..+.+.++++|++.|+|.|+..|...+++++..|+++      |++..+++..+..+|.++++.++..+...        
T Consensus       123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  196 (491)
T 4gc0_A          123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT  196 (491)
T ss_dssp             GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence            4578899999999999999999999999999999877      99999999999999999999988877543        


Q ss_pred             ccchhhhHHHHHHHHHHH
Q 013611          101 LNWALGFGIPCAFMVAAL  118 (439)
Q Consensus       101 ~g~~~~F~i~~~~~~i~~  118 (439)
                      ..|++.+.+..+..++.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~  214 (491)
T 4gc0_A          197 DGWRYMFASECIPALLFL  214 (491)
T ss_dssp             THHHHHHHTTHHHHHHHH
T ss_pred             hhhHHHhhhhhhhhhhhh
Confidence            356666666554444333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.30  E-value=6.3e-12  Score=125.82  Aligned_cols=140  Identities=12%  Similarity=0.080  Sum_probs=94.7

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611          246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI  325 (439)
Q Consensus       246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (439)
                      +.+..++.+..++..++.+++.+++.+           ++.+.++.++.++++....+.                     
T Consensus       262 g~~~~~~~~~~~~~~~~~g~l~dr~g~-----------~~~l~~~~~~~~~~~~~~~~~---------------------  309 (417)
T 2cfq_A          262 GYVTTMGELLNASIMFFAPLIINRIGG-----------KNALLLAGTIMSVRIIGSSFA---------------------  309 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCH-----------HHHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcH-----------HHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            345556666656666666666554332           334556666666655444321                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHH-HHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSI-YMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl-~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                       .+.+++++...+.+++.....+....++.+..|++.||++.|+ ++....+|+.++|.+.+.+.+.             
T Consensus       310 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-------------  375 (417)
T 2cfq_A          310 -TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-------------  375 (417)
T ss_dssp             -CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-------------
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-------------
Confidence             2344555566667777666666667889999999999999998 5888899999999999977531             


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFLYFAKS  434 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~  434 (439)
                         .++...|.+.+++++++.++.+...++
T Consensus       376 ---~g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          376 ---IGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             ---SHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             ---cCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence               234567888888888887776655554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.68  E-value=1e-06  Score=87.88  Aligned_cols=145  Identities=14%  Similarity=0.059  Sum_probs=108.5

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++..+..+...+..|+.+.+.+++.           .++.+.+|.++.+++.++..+....                 
T Consensus        64 ~g~~~~~~~~~~~~~~~~~G~l~dr~g-----------~r~~l~~~~~~~~~~~~~~~~~~~~-----------------  115 (451)
T 1pw4_A           64 LGFALSGISIAYGFSKFIMGSVSDRSN-----------PRVFLPAGLILAAAVMLFMGFVPWA-----------------  115 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSC-----------HHHHHHHHHHHHHHHHHHHHHCHHH-----------------
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhcC-----------chHHHHHHHHHHHHHHHHHHhhhhc-----------------
Confidence            466777778888888888888765443           3346778888888888877762100                 


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                       ..+.+++++..++.|++.+...+....++.+..|++.|++++|++....++|..+|+.+.+.+.+...     .|    
T Consensus       116 -~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----~w----  185 (451)
T 1pw4_A          116 -TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-----DW----  185 (451)
T ss_dssp             -HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-----CS----
T ss_pred             -cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cH----
Confidence             02566788889999999999999999999999999999999999999999999999999987653210     13    


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          405 LNRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                            ...|++.++++++..++.++..+
T Consensus       186 ------~~~f~~~~~~~~~~~~~~~~~~~  208 (451)
T 1pw4_A          186 ------HAALYMPAFCAILVALFAFAMMR  208 (451)
T ss_dssp             ------TTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             ------HHHHHHHHHHHHHHHHHHHhhcc
Confidence                  34566777777766665555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.62  E-value=1.3e-06  Score=86.77  Aligned_cols=115  Identities=10%  Similarity=0.048  Sum_probs=93.3

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++..+..+...+..|+.+.+.+++.           .++.+.++.++.+++.++......                  
T Consensus        63 ~g~~~~~~~~~~~i~~~~~G~l~dr~g-----------~r~~l~~~~~~~~~~~~~~~~~~~------------------  113 (438)
T 3o7q_A           63 AGLIQSAFYFGYFIIPIPAGILMKKLS-----------YKAGIITGLFLYALGAALFWPAAE------------------  113 (438)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHSC-----------HHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhc-----------chHHHHHHHHHHHHHHHHHHhccc------------------
Confidence            456677777777777778777765443           345678888888888777643221                  


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                       ..+.+++++..++.|+|.+...+....++.+..|++.|+.++|+.+...++|..+++.+.+.+.
T Consensus       114 -~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          114 -IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             -cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1367888899999999999999999999999999999999999999999999999999998875

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.55  E-value=3.8e-06  Score=84.99  Aligned_cols=143  Identities=20%  Similarity=0.155  Sum_probs=109.5

Q ss_pred             cchhhhhhHHHHHHHHHHhhhhhhhh-hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 013611          244 PAASLQLFIGIGIITFIPIYDCIFVP-ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPN  322 (439)
Q Consensus       244 ~~~~~~~in~~~iii~~pl~~~~~~~-~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (439)
                      ..+++..+..+...+..|+.+++.++ +.+|           +.+.+|.++.+++.++..+.                  
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~------------------  105 (491)
T 4aps_A           55 TAASIMAIYASMVYLSGTIGGFVADRIIGAR-----------PAVFWGGVLIMLGHIVLALP------------------  105 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHSC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHHHHHh------------------
Confidence            34667778888888888888887765 3333           45677877777777665532                  


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhh--HHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCC
Q 013611          323 VTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKEL--KSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSW  400 (439)
Q Consensus       323 ~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~--~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~  400 (439)
                          .+.+++++..++.|+|++...+....++.+..|++.  |+.++++++...++|..+|+.+.+.+.+.         
T Consensus       106 ----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---------  172 (491)
T 4aps_A          106 ----FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---------  172 (491)
T ss_dssp             ----CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             ----hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---------
Confidence                356677888899999999999999999999999988  88889999999999999999999988642         


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611          401 FADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY  435 (439)
Q Consensus       401 ~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~  435 (439)
                             .++...|+..++..+++.++++...+++
T Consensus       173 -------~g~~~~f~~~~~~~~~~~~~~~~~~~~~  200 (491)
T 4aps_A          173 -------AGYHVAFSLAAIGMFIGLLVYYFGGKKT  200 (491)
T ss_dssp             -------SCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence                   1235567777777777777766665544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.40  E-value=2.5e-06  Score=83.15  Aligned_cols=133  Identities=17%  Similarity=0.088  Sum_probs=102.2

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++..+..+...+..|+.+.+.+++.+|           +.+.++.++.+++........                   
T Consensus        37 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~-------------------   86 (375)
T 2gfp_A           37 VQSVMGAYLLTYGVSQLFYGPISDRVGRR-----------PVILVGMSIFMLATLVAVTTS-------------------   86 (375)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHTTSCCC-----------CCCHHHHHHHHHHHHHHHHHH-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----------hhHHHHHHHHHHHHHHHHHhc-------------------
Confidence            45677777788888888888876644332           345577777887777766552                   


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN  404 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~  404 (439)
                         +.+++++..++.|++.....+....++.+..|+++|+++++......++|..+++.+.+.+.+.             
T Consensus        87 ---~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------------  150 (375)
T 2gfp_A           87 ---SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-------------  150 (375)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-------------
T ss_pred             ---cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------------
Confidence               5677888889999999999999999999999999999999999999999999999999877531             


Q ss_pred             cccchhhHHHHHHHHHHHHHHH
Q 013611          405 LNRAHLDYFYWLLAALSAGGLL  426 (439)
Q Consensus       405 l~~~~~~~~f~~~~~l~~l~~~  426 (439)
                         .++...|+..+++.++..+
T Consensus       151 ---~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          151 ---WNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHC
T ss_pred             ---ccHHHHHHHHHHHHHHHHH
Confidence               1335566666666666554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.40  E-value=5.6e-06  Score=84.51  Aligned_cols=142  Identities=15%  Similarity=0.084  Sum_probs=103.2

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611          245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT  324 (439)
Q Consensus       245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (439)
                      .+++..+..+..++..++.+++.+++.          +.++.+.++.++.+++.++..+.                    
T Consensus        56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~----------g~r~~~~~~~~~~~~~~~~~~~~--------------------  105 (524)
T 2xut_A           56 AKDVFHSFVIGVYFFPLLGGWIADRFF----------GKYNTILWLSLIYCVGHAFLAIF--------------------  105 (524)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHTTSS----------CSHHHHHHHHHHHHHHHHHHHHT--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh----------cchHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            456667777777777777777665430          33446677887777777666643                    


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHH---HHHHhhhhhhhhhHHHhhhhccccCCCCCCCC
Q 013611          325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSI---YMSVLGVGGFLSSILVSIINEATSRDGGDSWF  401 (439)
Q Consensus       325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl---~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~  401 (439)
                       +.+.+++++..++.|+|++...+....++.+..|++.|+++++.   ++...++|..+|+.+.+.+.+.          
T Consensus       106 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~----------  174 (524)
T 2xut_A          106 -EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN----------  174 (524)
T ss_dssp             -SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT----------
T ss_pred             -cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------
Confidence             11567778888999999999999999999999999999877666   8899999999999998877531          


Q ss_pred             CCCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          402 ADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       402 ~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                            .++...|++.+++.+++.++++...+
T Consensus       175 ------~g~~~~f~~~~~~~~~~~~~~~~~~~  200 (524)
T 2xut_A          175 ------FGAAVAFGIPGVLMFVATVFFWLGRK  200 (524)
T ss_dssp             ------SCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             ------ccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                  12355677777777766665544333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.62  E-value=0.0014  Score=65.81  Aligned_cols=125  Identities=16%  Similarity=0.044  Sum_probs=84.1

Q ss_pred             hhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-CC--C
Q 013611          247 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDK-PN--V  323 (439)
Q Consensus       247 ~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~--~  323 (439)
                      ++.+...+..++..++.+.+.|++.||           +-+.++.++..++.+..++....       ...+.. ..  .
T Consensus        59 ~~~s~~~~G~~iG~~~~G~laDr~GRk-----------~~l~~~~~l~~i~~i~~a~~~~~-------~~~~~~~~~~~~  120 (491)
T 4gc0_A           59 FCVASALIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISGVGSAWPELG-------FTSINPDNTVPV  120 (491)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHHHHHHHCTTTT-------TSCSSSSSSCCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHHHHHHhhh-------hhhhcchhHHHH
Confidence            334444455555555666655544433           45667777777776665543100       000000 00  0


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611          324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN  389 (439)
Q Consensus       324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~  389 (439)
                      ....+.+.+++..++.|+|++...+....++.+.+|++.|+...++......+|..++..+.....
T Consensus       121 ~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~  186 (491)
T 4gc0_A          121 YLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA  186 (491)
T ss_dssp             GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence            001356778899999999999999999999999999999999999999999999999887776654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=96.92  E-value=0.00028  Score=69.82  Aligned_cols=86  Identities=5%  Similarity=0.001  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHH-HHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611           32 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW-WYFGISFGANSTILVVIYIQDNLNWALGFGIP  110 (439)
Q Consensus        32 ~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~-~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~  110 (439)
                      .+.+.+...+.+++.+...+...++..+.+|++.      |++++++ +..+.++|.++||.++|++.+..||+..|.+.
T Consensus       312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~  385 (417)
T 2cfq_A          312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL  385 (417)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence            4455566666777777777778889999999765      8999998 47777899999999999999888999999988


Q ss_pred             HHHHHHHHHHHHh
Q 013611          111 CAFMVAALVLFLL  123 (439)
Q Consensus       111 ~~~~~i~~~l~~~  123 (439)
                      ++..+++.++.+.
T Consensus       386 ~~~~l~~~~~~~~  398 (417)
T 2cfq_A          386 GLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            8777777665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	439
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.68
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.4
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.72
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.61

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.9e-15  Score=148.72  Aligned_cols=312  Identities=10%  Similarity=0.010  Sum_probs=169.6

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-ccchhhhHH
Q 013611           31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN-LNWALGFGI  109 (439)
Q Consensus        31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~-~g~~~~F~i  109 (439)
                      +...+++.|++.|++.|...|...++++|++|+++      |+++++++..+.++|.++++.+++.+.+. .+|++.|++
T Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~  188 (447)
T d1pw4a_         115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM  188 (447)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhhhhhcccccchh
Confidence            56778999999999999999999999999999887      99999999999999999999999887664 589999998


Q ss_pred             HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611          110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK  189 (439)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (439)
                      .++..++..++.+...+..+...+..+.+                      +  .+.....+..+..+.           
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~--~~~~~~~~~~~~~~~-----------  233 (447)
T d1pw4a_         189 PAFCAILVALFAFAMMRDTPQSCGLPPIE----------------------E--YKNDYPDDYNEKAEQ-----------  233 (447)
T ss_dssp             HHHHHHHHHHHHHHHCCCSSTTTCCCSCT----------------------T--TCCC----------------------
T ss_pred             hhhhHHHHHHHHHHhcccchhhcccchhh----------------------h--hhhhcccchhhcccc-----------
Confidence            88666655544433222211110000000                      0  000000000000000           


Q ss_pred             CCchhhHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhh
Q 013611          190 LCTLEDVEEAKALLR---LIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCI  266 (439)
Q Consensus       190 ~~~~~~v~~~k~~~~---~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~  266 (439)
                      ..+.. ....+..++   ...+.......+.......+..+.   ......+ ......+....+..+..++..++.+++
T Consensus       234 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~  308 (447)
T d1pw4a_         234 ELTAK-QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT---YLKEVKH-FALDKSSWAYFLYEYAGIPGTLLCGWM  308 (447)
T ss_dssp             --CCT-HHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH---HBTTBSC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchh-hHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhh---hcccccc-cccchhhhhhhcchhhhhhhhhhhhhh
Confidence            00000 001111111   111111111122221111111222   2222221 112223445555666666666666665


Q ss_pred             hhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 013611          267 FVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFT  346 (439)
Q Consensus       267 ~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~  346 (439)
                      .++..++.           +...+.+...+.........         .        ....+.++.++..++.|++....
T Consensus       309 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~---------~--------~~~~~~~~~~~~~~~~g~~~~~~  360 (447)
T d1pw4a_         309 SDKVFRGN-----------RGATGVFFMTLVTIATIVYW---------M--------NPAGNPTVDMICMIVIGFLIYGP  360 (447)
T ss_dssp             HHHTSTTC-----------HHHHHHHHHHHHHHHHHHTT---------S--------CCTTCHHHHHHHHHHHHHHHTHH
T ss_pred             hhhccccc-----------cccccchhHHHHHHHHHHHH---------h--------cccccHHHHHHHHHHHHHHHHHH
Confidence            54433221           11112211111111111110         0        01134566667777788888777


Q ss_pred             hhhhHHHHHhhcChhhHHHHHHHHHHHhhh-hhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 013611          347 IVGLQEFFYDQIPKELKSFGLSIYMSVLGV-GGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGL  425 (439)
Q Consensus       347 ~~~~~~~~~~~aP~~~~g~~~gl~~~~~~i-G~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~  425 (439)
                      .+.....+.+..|++.||+++|+.+...++ |..+++.+.+.+.+..                ++...|.+.++.++++.
T Consensus       361 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~----------------g~~~~~~~~~~~~~~~~  424 (447)
T d1pw4a_         361 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAV  424 (447)
T ss_dssp             HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------ChHHHHHHHHHHHHHHH
Confidence            777778899999999999999999888777 4566788888776432                22445666666666665


Q ss_pred             HHHHHHh
Q 013611          426 LAFLYFA  432 (439)
Q Consensus       426 ~i~~~~~  432 (439)
                      ++...+.
T Consensus       425 ~~~~~~~  431 (447)
T d1pw4a_         425 ILLIVVM  431 (447)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5544443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=8.4e-12  Score=119.52  Aligned_cols=118  Identities=13%  Similarity=0.078  Sum_probs=92.0

Q ss_pred             CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611          282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE  361 (439)
Q Consensus       282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~  361 (439)
                      +.++.+.++.++.++++....+.                      .+.++.++..++.+++.+...+....++.+.+|++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  344 (417)
T d1pv7a_         287 GGKNALLLAGTIMSVRIIGSSFA----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR  344 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTC----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred             ccccchhhhHHHHHHhhhccccc----------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh
Confidence            34456677777777766655532                      35677778888999999999999999999999999


Q ss_pred             hHHHHHHHH-HHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013611          362 LKSFGLSIY-MSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR  437 (439)
Q Consensus       362 ~~g~~~gl~-~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~  437 (439)
                      .||+++|+. ++..++|..+++.+.|.+.+.                .++...|++.++++++..++..+..|+-++
T Consensus       345 ~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         345 FSATIYLVCFCFFKQLAMIFMSVLAGNMYES----------------IGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----------------HCHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HCHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            999999975 567789999999999988643                234567888888888888887777766543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=2e-07  Score=90.12  Aligned_cols=147  Identities=14%  Similarity=0.052  Sum_probs=108.2

Q ss_pred             ccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 013611          243 IPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPN  322 (439)
Q Consensus       243 ~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (439)
                      ...+++.++..+...+..++.+.+.+++.+           ++.+.+|.++.+++.++.+.....               
T Consensus        59 ~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~-----------r~~~~~~~~~~~~~~~~~~~~~~~---------------  112 (447)
T d1pw4a_          59 GDLGFALSGISIAYGFSKFIMGSVSDRSNP-----------RVFLPAGLILAAAVMLFMGFVPWA---------------  112 (447)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHSCH-----------HHHHHHHHHHHHHHHHHHHHCHHH---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-----------hHHHHHHHHHHHHHHhhccccchh---------------
Confidence            345677788888888888888887765443           346678888888887777655321               


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCC
Q 013611          323 VTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFA  402 (439)
Q Consensus       323 ~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~  402 (439)
                         ..+.+++++..++.|++++...+....++.+..|++.|++++|+++...++|..+++.+.+......     ..|  
T Consensus       113 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-----~~w--  182 (447)
T d1pw4a_         113 ---TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-----NDW--  182 (447)
T ss_dssp             ---HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-----CCS--
T ss_pred             ---hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh-----hcc--
Confidence               1356677888899999999999999899999999999999999999999999999998887664321     122  


Q ss_pred             CCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611          403 DNLNRAHLDYFYWLLAALSAGGLLAFLYFAK  433 (439)
Q Consensus       403 ~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~  433 (439)
                              ...|++.+.+.++..++.+...+
T Consensus       183 --------~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         183 --------HAALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             --------TTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             --------cccchhhhhhHHHHHHHHHHhcc
Confidence                    23455666666666555555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=2.3e-05  Score=73.30  Aligned_cols=89  Identities=4%  Similarity=-0.006  Sum_probs=76.3

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHH-HHHHHHHHHHHHHHHHhhhcccchhhh
Q 013611           29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWY-FGISFGANSTILVVIYIQDNLNWALGF  107 (439)
Q Consensus        29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y-~~~nlG~~ig~~l~g~l~~~~g~~~~F  107 (439)
                      ..+.+.+++..++.|++.+...|...++..+.+|++.      |+++++..+ .+..+|.++||.++|++.+.+||+..|
T Consensus       309 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~  382 (417)
T d1pv7a_         309 ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY  382 (417)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence            3456778888899999999999999999999999877      999999865 466799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 013611          108 GIPCAFMVAALVLFLL  123 (439)
Q Consensus       108 ~i~~~~~~i~~~l~~~  123 (439)
                      ++.++..++..++.++
T Consensus       383 ~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         383 LVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9888777766665544