Citrus Sinensis ID: 013629

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
MGVAGKWIKALVGLKKSEKSPSSEKDENRKAGSRSQHRRKHSAEIDAEKLQNEFEQNVASPAGDANLNAVAEATGSPSDSLQVQNPTYNQQVVREEWAATCIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESQTTQQTLQQQLANEARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQSVPSGFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMVRENESAEDKNGTKPQIKSAGKKPIASNLHSSMSSQKAGPSHSDGSSSSPGISAGMLEATATQLAKPKSKPPVEDLMEEANSRPAGISSRSHSNPKERTTQSDKPVKKRLSLPNNAAAAPRNQTGRPGRTAAKVTPSSNRPMSNKSRMNGKGDSNPTKSVPQPVGL
cccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccHHHHHHHcccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccc
MGVAGKWIKALVGLkksekspssekdenrkagsrsqhrrkhsAEIDAEKLQNEFeqnvaspagdanLNAVAeatgspsdslqvqnptynqqvVREEWAATCIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESQTTQQTLQQQLANEARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQwqagsrqqsvpsgfepdksswgwNWLERWMAVrpwenrfldinlrdgvmvrenesaedkngtkpqiksagkkpiasnlhssmssqkagpshsdgsssspgisaGMLEATATqlakpkskppvedlmeeansrpagissrshsnpkerttqsdkpvkkrlslpnnaaaaprnqtgrpgrtaakvtpssnrpmsnksrmngkgdsnptksvpqpvgl
mgvagkwikalvglkksekspssekdenrkagsrsqhrrkhsAEIDAEKLQNEFEQNVASPAGDANLNAVAEATgspsdslqvqNPTYNQQVVREEWAATCIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLalesqttqqtlQQQLANEARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAgsrqqsvpsgfepdkSSWGWNWLERWMAVRPWENRFLDINLRDGVMVRenesaedkngtkpqiksagkkpIASNLHSSMSSQKAGPSHSDGSSSSPGISAGMLEATATQLAKPKSKPPVEDLMEEansrpagissrshsnpkerttqsdkpvkkrlslpnnaaaaprnqtgrpgrtaakvtpssnrpmsnksrmngkgdsnptksvpqpvgl
MGVAGKWIKALVGLkksekspssekDENRKAGSRSQHRRKHSAEIDAEKLQNEFEQNVASPAGDANLNAVAEATGSPSDSLQVQNPTYNQQVVREEWAATCIQTafrgflarralralkglvrlQALVRGHAVRKQAAITLRCMqalvrvqarvrarrvrlalESqttqqtlqqqlANEARVREIEEGWCDSVGSVEEIQAKLlkrqeaaakreramayalaHQWQAGSRQQSVPSGFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMVRENESAEDKNGTKPQIKSAGKKPIASNLHSSMSSQKagpshsdgsssspgisagMLEATATQLAKPKSKPPVEDLMEEANSRPAGISSRSHSNPKERTTQSDKPVKKRLSLPNNAAAAPRNQTGRPGRTAAKVTPSSNRPMSNKSRMNGKGDSNPTKSVPQPVGL
*****KWIKALV***************************************************************************YNQQVVREEWAATCIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLAL*****************RVREIEEGWCDSVGSVEEIQAKLL************MAYALAHQW******************SWGWNWLERWMAVRPWENRFLDINLRDGVMV*********************************************************************************************************************************************************************
MGVAGKWIK***************************************************************************************WAATCIQTAFRGFLARRALRALKGLV*****************************************************************************************************************************NWLER*******************************************************************************************************************************************************************************************
MGVAGKWIKALVGL*****************************EIDAEKLQNEFEQNVASPAGDANLNAVA***********VQNPTYNQQVVREEWAATCIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALES**************ARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALA********************SSWGWNWLERWMAVRPWENRFLDINLRDGVMVRE*********************IASNL*********************GISAGMLEATAT********************************************KKRLSLPNNA**************************************************
************G*K******************************************************************QVQNPTYNQQVVREEWAATCIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESQTTQQTLQQQLANEARVR**EEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGS**************SWGWNWLERWMAVRPWE***********************************************************************************************************************************************************************************
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MGVAGKWIKALVGLKKSEKSPSSEKDENRKAGSRSQHRRKHSAEIDAEKLQNEFEQNVASPAGDANLNAVAEATGSPSDSLQVQNPTYNQQVVREEWAATCIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESQTTQQTLQQQLANEARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQSVPSGFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMVRENESAEDKNGTKPQIKSAGKKPIASNLHSSMSSQKAGPSHSDGSSSSPGISAGMLEATATQLAKPKSKPPVEDLMEEANSRPAGISSRSHSNPKERTTQSDKPVKKRLSLPNNAAAAPRNQTGRPGRTAAKVTPSSNRPMSNKSRMNGKGDSNPTKSVPQPVGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query439 2.2.26 [Sep-21-2011]
Q9SF32454 Protein IQ-DOMAIN 1 OS=Ar no no 0.485 0.469 0.387 1e-37
Q8LPG9668 Protein IQ-DOMAIN 14 OS=A no no 0.325 0.214 0.396 6e-23
Q8L4D8 587 Protein IQ-DOMAIN 31 OS=A no no 0.154 0.115 0.573 1e-16
Q9FXI5 794 Protein IQ-DOMAIN 32 OS=A no no 0.378 0.209 0.300 4e-16
>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1 Back     alignment and function desciption
 Score =  157 bits (398), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/227 (38%), Positives = 134/227 (59%), Gaps = 14/227 (6%)

Query: 44  EIDAEKLQNEFEQNVASPAGDANLNAVAEA-TGSPSDSLQVQNPTYNQQVV--------R 94
           E+  +++  E ++N+  P+ D+    VA     SP  S +    + +Q +V        +
Sbjct: 51  EVRVDEVNYEQKKNLYPPSSDSVTATVAHVLVDSPPSSPE----SVHQAIVVNRFAGKSK 106

Query: 95  EEWAATCIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARV 154
           EE AA  IQ+ FRG LARR  + ++G  RL+ L+ G  V++QAAITL+CMQ L RVQ+++
Sbjct: 107 EEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQI 166

Query: 155 RARRVRLALESQTTQQTLQQQLANEARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRE 214
           R+RR+R++ E+Q   + L Q+ A E    +    W  S  S E+++A +L + EA  +RE
Sbjct: 167 RSRRIRMSEENQARHKQLLQKHAKELGGLKNGGNWNYSNQSKEQVEAGMLHKYEATMRRE 226

Query: 215 RAMAYALAHQWQAGSRQQSV-PSGFEPDKSSWGWNWLERWMAVRPWE 260
           RA+AYA  HQ    S  ++  P   +P   +WGW+WLERWMA RPWE
Sbjct: 227 RALAYAFTHQQNLKSFSKTANPMFMDPSNPTWGWSWLERWMAGRPWE 273
Modulates expression of glucosinolate pathway genes. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1 Back     alignment and function description
>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1 Back     alignment and function description
>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
359479237434 PREDICTED: protein IQ-DOMAIN 1-like [Vit 0.974 0.986 0.737 1e-161
224054442390 predicted protein [Populus trichocarpa] 0.879 0.989 0.769 1e-159
224106718428 predicted protein [Populus trichocarpa] 0.881 0.904 0.763 1e-153
255545329435 calmodulin binding protein, putative [Ri 0.990 1.0 0.724 1e-151
357471403440 IQ domain-containing protein [Medicago t 0.984 0.981 0.687 1e-148
357471401438 IQ domain-containing protein [Medicago t 0.981 0.984 0.681 1e-147
356543656421 PREDICTED: protein IQ-DOMAIN 1-like isof 0.956 0.997 0.643 1e-146
356529515434 PREDICTED: uncharacterized protein LOC10 0.981 0.993 0.631 1e-145
403084340424 IQ-DOMAIN 1-like isoform 3 [Glycine max] 0.956 0.990 0.632 1e-142
147783561 1922 hypothetical protein VITISV_031264 [Viti 0.920 0.210 0.631 1e-137
>gi|359479237|ref|XP_002265745.2| PREDICTED: protein IQ-DOMAIN 1-like [Vitis vinifera] gi|296084052|emb|CBI24440.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 320/434 (73%), Positives = 352/434 (81%), Gaps = 6/434 (1%)

Query: 1   MGVAGKWIKALVGLKKSEKSPSSEKDENRKA-GSRSQHRRKHSAEIDAEKLQNEFEQNVA 59
           MGV+GKWIKALVGLKKSEKS SSEKDENR A GS+  HRRKHS EI+ + LQ E +QN A
Sbjct: 1   MGVSGKWIKALVGLKKSEKSQSSEKDENRTAAGSKFWHRRKHSVEINTDLLQVELDQNAA 60

Query: 60  SPAGDANLNAVAEATGSPSDSLQVQNPTYNQQVVREEWAATCIQTAFRGFLARRALRALK 119
            P  D +LN+V +  GSPS S Q Q+    QQ VREEWAAT IQTAFRGFLARRALRALK
Sbjct: 61  PPVEDTDLNSVPDPAGSPSGSNQAQDAVQVQQNVREEWAATYIQTAFRGFLARRALRALK 120

Query: 120 GLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESQTTQQTLQQQLANE 179
           GLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESQT QQ LQ QLANE
Sbjct: 121 GLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESQTAQQKLQLQLANE 180

Query: 180 ARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQSVPSGFE 239
           ARVREIEEGWCDSVGSVE+IQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQ+ PS FE
Sbjct: 181 ARVREIEEGWCDSVGSVEDIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAAPSEFE 240

Query: 240 PDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMVRENESAEDKNGTKPQIKSAGKKPIA 299
           PDKS+WGWNWLERWMAVRPWENRFLDINLRDGVM+REN S E KNG+K Q KSAGKKPI+
Sbjct: 241 PDKSNWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSTEGKNGSKTQSKSAGKKPIS 300

Query: 300 SNLHSSMSSQKAGPSHSDGSSSSPGISAGMLEATATQLAKPKSKPPVEDLMEEANSRPAG 359
            NL    S+QK GPS+SDG SSSP  SA   EA++T  AKPKSKP +EDL EEANSRP G
Sbjct: 301 LNL----SNQKMGPSNSDGGSSSPTKSAMFQEASSTVSAKPKSKPILEDLAEEANSRP-G 355

Query: 360 ISSRSHSNPKERTTQSDKPVKKRLSLPNNAAAAPRNQTGRPGRTAAKVTPSSNRPMSNKS 419
           + SRSHSNPKER+T  DK  KKRLSLPN+   +    T +  R+  K   S+ +P+ + S
Sbjct: 356 VGSRSHSNPKERSTLQDKQAKKRLSLPNSGIGSGAQATRQQSRSVLKKAASAQKPIKDNS 415

Query: 420 RMNGKGDSNPTKSV 433
           ++N KGD   TKS 
Sbjct: 416 KVNIKGDLETTKST 429

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224054442|ref|XP_002298262.1| predicted protein [Populus trichocarpa] gi|222845520|gb|EEE83067.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224106718|ref|XP_002314260.1| predicted protein [Populus trichocarpa] gi|222850668|gb|EEE88215.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255545329|ref|XP_002513725.1| calmodulin binding protein, putative [Ricinus communis] gi|223547176|gb|EEF48672.1| calmodulin binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357471403|ref|XP_003605986.1| IQ domain-containing protein [Medicago truncatula] gi|355507041|gb|AES88183.1| IQ domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357471401|ref|XP_003605985.1| IQ domain-containing protein [Medicago truncatula] gi|355507040|gb|AES88182.1| IQ domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356543656|ref|XP_003540276.1| PREDICTED: protein IQ-DOMAIN 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356529515|ref|XP_003533336.1| PREDICTED: uncharacterized protein LOC100787148 [Glycine max] Back     alignment and taxonomy information
>gi|403084340|gb|AFR23355.1| IQ-DOMAIN 1-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|147783561|emb|CAN68445.1| hypothetical protein VITISV_031264 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
TAIR|locus:2090409422 IQD5 "AT3G22190" [Arabidopsis 0.943 0.981 0.422 1.6e-77
TAIR|locus:2057459416 IQD6 "AT2G26180" [Arabidopsis 0.574 0.605 0.295 4.5e-27
TAIR|locus:2030225414 iqd8 "AT1G72670" [Arabidopsis 0.817 0.867 0.242 1.1e-20
TAIR|locus:2055430263 iqd9 "AT2G33990" [Arabidopsis 0.382 0.638 0.236 3.4e-13
TAIR|locus:2086385259 IQD10 "AT3G15050" [Arabidopsis 0.312 0.528 0.270 2.7e-12
TAIR|locus:2143503461 iqd2 "AT5G03040" [Arabidopsis 0.610 0.581 0.241 1e-11
TAIR|locus:2134628534 iqd17 "AT4G00820" [Arabidopsis 0.489 0.402 0.262 1.9e-10
TAIR|locus:2018837371 IQD7 "AT1G17480" [Arabidopsis 0.519 0.614 0.251 5.6e-10
TAIR|locus:2200945527 IQD18 "AT1G01110" [Arabidopsis 0.512 0.426 0.240 1.5e-08
TAIR|locus:2100504430 IQD3 "AT3G52290" [Arabidopsis 0.523 0.534 0.236 3.1e-08
TAIR|locus:2090409 IQD5 "AT3G22190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 184/435 (42%), Positives = 233/435 (53%)

Query:     1 MGVAGKWIKALVGLXXXXXXXXXXXDENRKAGSRSQHRRKHSAEIDAEKLQNEFEQNVAS 60
             MG +G+WIKALVG            DEN K  ++S+  RK+S + D EK Q+ FE     
Sbjct:     1 MGASGRWIKALVGFTKSDKSRSSKKDENVKVATKSRFGRKNSVDFDFEKFQDGFE----- 55

Query:    61 PAGDANLNAVAEATGSPSDSLQVQNPT-YNQQVVREEWAATCIQTXXXXXXXXXXXXXXX 119
                D+N  ++ +   S S SLQ      Y++Q  RE  AAT IQT               
Sbjct:    56 ---DSNTRSMVDTGVSTSTSLQSYGGVAYDEQS-RENRAATRIQTAYRGFLARRALRALK 111

Query:   120 XXXXXQALVRGHAVRKQAAITLRCMXXXXXXXXXXXXXXXXXXXE--SXXXXXXXXXXXA 177
                  QALVRGHAVRKQAA+TLRCM                   E  S           A
Sbjct:   112 GLVRLQALVRGHAVRKQAAVTLRCMQALVRVQARVRARRVRLALELESETSQQTLQQQLA 171

Query:   178 NEARVREIEEGWCDSVGSVEEIQAKLXXXXXXXXXXXXXXXXXXXHQWQAGSRQQSVPSG 237
             +EARVREIEEGWCDS+GSVE+IQAKL                   HQWQAG+R  S  SG
Sbjct:   172 DEARVREIEEGWCDSIGSVEQIQAKLLKRQEAAAKRERAMAYALTHQWQAGTRLLSAHSG 231

Query:   238 FEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMVRENESAEDKNGTKPQIKSAGKKP 297
             F+PDK++WGWNWLERWMAVRPWENRFLD NLRD   + EN   + +N  K QIKS  K P
Sbjct:   232 FQPDKNNWGWNWLERWMAVRPWENRFLDSNLRDDAKLGENGMEQSENVPKTQIKSVSKMP 291

Query:   298 IASNLHSSMSSQKXXXXXXXXXXXXXXXXXXMLEATATQLAKPKSKPPVEDLMEEANSRP 357
               SNL S +SSQ                    + ++   ++K KSKP  +DL  E NSRP
Sbjct:   292 NTSNLVSGVSSQMTGPCQSDGDSSSPG-----ISSSIPVVSKAKSKPAKDDLAVEVNSRP 346

Query:   358 AGISSRSHSNPKERTTQSDKPVKKRLSLPNNAAAAPRNQTGRPGRTAAKVTPSSNRPMSN 417
              G   RSHSNPKER+ + ++  K+RLSLPN+  +   +Q+ +  R A K+TP+S + +  
Sbjct:   347 -GAGPRSHSNPKERSREPNRSSKERLSLPNSGKSLG-SQSTKANR-AGKLTPASQKVVEE 403

Query:   418 KSRMNGKG-DSNPTK 431
             KS  N +  +S+P K
Sbjct:   404 KSAQNQRRRNSDPIK 418
GO:0005516 "calmodulin binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2057459 IQD6 "AT2G26180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030225 iqd8 "AT1G72670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055430 iqd9 "AT2G33990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086385 IQD10 "AT3G15050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143503 iqd2 "AT5G03040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134628 iqd17 "AT4G00820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018837 IQD7 "AT1G17480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200945 IQD18 "AT1G01110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100504 IQD3 "AT3G52290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 439
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 97.92
KOG0160862 consensus Myosin class V heavy chain [Cytoskeleton 97.59
PF13178102 DUF4005: Protein of unknown function (DUF4005) 97.44
smart0001526 IQ Short calmodulin-binding motif containing conse 97.41
KOG0160862 consensus Myosin class V heavy chain [Cytoskeleton 96.81
KOG0520975 consensus Uncharacterized conserved protein, conta 96.77
PTZ00014821 myosin-A; Provisional 96.41
KOG2128 1401 consensus Ras GTPase-activating protein family - I 94.96
COG5022 1463 Myosin heavy chain [Cytoskeleton] 94.73
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 94.55
KOG01641001 consensus Myosin class I heavy chain [Cytoskeleton 93.65
KOG0520975 consensus Uncharacterized conserved protein, conta 91.92
smart0001526 IQ Short calmodulin-binding motif containing conse 91.59
PTZ00014821 myosin-A; Provisional 90.6
KOG0163 1259 consensus Myosin class VI heavy chain [Cytoskeleto 83.0
KOG2128 1401 consensus Ras GTPase-activating protein family - I 81.52
KOG4427 1096 consensus E3 ubiquitin protein ligase [Posttransla 81.37
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information 
Probab=97.92  E-value=1.2e-05  Score=50.79  Aligned_cols=21  Identities=43%  Similarity=0.665  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHhhhHHHHHHHH
Q 013629           96 EWAATCIQTAFRGFLARRALR  116 (439)
Q Consensus        96 e~AAI~IQsafRGyLARR~~r  116 (439)
                      +.|||.||+.||||++|+.|+
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~k   21 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRYK   21 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            368999999999999999985

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] Back     alignment and domain information
>PF13178 DUF4005: Protein of unknown function (DUF4005) Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] Back     alignment and domain information
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] Back     alignment and domain information
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 3e-09
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 5e-08
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 1e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 2e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-04
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 3e-07
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 5e-06
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 2e-04
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 15/136 (11%), Positives = 42/136 (30%), Gaps = 14/136 (10%)

Query: 102 IQTAFRGFLARRA----LRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRAR 157
                +    ++A          +  +Q+ +  H   K+        Q +  ++A   + 
Sbjct: 767 ANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTE-KPPKGQEVSELEAIYNSL 825

Query: 158 RVRLALESQTTQQTLQQQLANEARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAM 217
           + +L L  +           NE                +E+ + +  +      KR++ +
Sbjct: 826 QTKLRLIKREPFVAPAGLTPNEIDSTWSA---------LEKAEQEHAEALRIELKRQKKI 876

Query: 218 AYALAHQWQAGSRQQS 233
           A  L    +   + ++
Sbjct: 877 AVLLQKYNRILKKLEN 892
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 99.08
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 98.81
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 98.74
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 98.72
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 98.09
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 97.8
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 97.71
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 97.55
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 97.25
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 97.24
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 97.24
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 97.12
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 96.89
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 96.11
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.69
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 95.04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 92.69
4dck_A168 Sodium channel protein type 5 subunit alpha; IQ-mo 92.41
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 88.91
4anj_A1052 Unconventional myosin-VI, green fluorescent prote; 86.36
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
Probab=99.08  E-value=2.9e-10  Score=86.15  Aligned_cols=53  Identities=30%  Similarity=0.375  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhh-hHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 013629           94 REEWAATCIQTAFRGFLARRALRALK-GLVRLQALVRGHAVRKQAAITLRCMQAL  147 (439)
Q Consensus        94 ree~AAI~IQsafRGyLARR~~raLK-giVrLQAlvRG~lVRrQa~~tlr~mqAa  147 (439)
                      +.+.|||.||+.||||++|+.|..++ ++|.||+.+||+++|+.+. .++...|+
T Consensus         3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~~r~~~aA   56 (58)
T 2ix7_C            3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAK-FLRRTKAA   56 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCc
Confidence            46789999999999999999999776 8999999999999999994 44444444
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 439
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 2e-05
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 5e-04
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 0.004
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 3e-05
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 98  AATCIQTAFRGFLARRALRAL----KGLVRLQALVRGHAVRKQAAITLRCMQALVRVQAR 153
             T  Q   RGFL R   RA+    + +  +Q  VR     K        M+   +++  
Sbjct: 737 IITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVK----HWPWMKLFFKIKPL 792

Query: 154 VR 155
           ++
Sbjct: 793 LK 794
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 97.24
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 97.22
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 95.8
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 94.62
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 91.08
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=97.24  E-value=0.00014  Score=77.36  Aligned_cols=42  Identities=31%  Similarity=0.315  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHh----hhHHHHHHHhhhhHHHHHH
Q 013629           96 EWAATCIQTAFRGFLARRALRAL----KGLVRLQALVRGHAVRKQA  137 (439)
Q Consensus        96 e~AAI~IQsafRGyLARR~~raL----KgiVrLQAlvRG~lVRrQa  137 (439)
                      ..+|+.||+.||||++|+.|+.+    .+++.||+.+||+++||.+
T Consensus       735 ~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~  780 (794)
T d2mysa2         735 AEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHW  780 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            46899999999999999999854    3788999999999998876
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure