Citrus Sinensis ID: 013638
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 439 | 2.2.26 [Sep-21-2011] | |||||||
| P37225 | 601 | NAD-dependent malic enzym | N/A | no | 0.963 | 0.703 | 0.857 | 0.0 | |
| Q8L7K9 | 607 | NAD-dependent malic enzym | yes | no | 0.931 | 0.673 | 0.815 | 0.0 | |
| Q9SIU0 | 623 | NAD-dependent malic enzym | no | no | 0.943 | 0.664 | 0.664 | 1e-164 | |
| P37221 | 626 | NAD-dependent malic enzym | N/A | no | 0.958 | 0.672 | 0.677 | 1e-161 | |
| P37224 | 623 | NAD-dependent malic enzym | N/A | no | 0.945 | 0.666 | 0.636 | 1e-156 | |
| Q6TU48 | 544 | NADP-dependent malic enzy | yes | no | 0.851 | 0.687 | 0.468 | 4e-96 | |
| P06801 | 572 | NADP-dependent malic enzy | yes | no | 0.863 | 0.662 | 0.445 | 7e-96 | |
| Q8BMF3 | 604 | NADP-dependent malic enzy | no | no | 0.920 | 0.668 | 0.430 | 2e-95 | |
| P13697 | 572 | NADP-dependent malic enzy | yes | no | 0.863 | 0.662 | 0.442 | 5e-95 | |
| Q16798 | 604 | NADP-dependent malic enzy | yes | no | 0.874 | 0.635 | 0.436 | 3e-93 |
| >sp|P37225|MAON_SOLTU NAD-dependent malic enzyme 59 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1 | Back alignment and function desciption |
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Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/428 (85%), Positives = 394/428 (92%), Gaps = 5/428 (1%)
Query: 1 MWNLARVAASVLSRSRRFSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGL 60
MW +AR AAS R+RR STAI PC+VHKRG DILHDPWFNKDTGFP+TERDRLGLRGL
Sbjct: 1 MWRVARSAASTFRRTRRLSTAISAPCIVHKRGADILHDPWFNKDTGFPMTERDRLGLRGL 60
Query: 61 LPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDN 120
LPPRVISFEQQY RFMESFRSLEKNTEGQP+ VVSLAKWRILNRLHDRNETLYYRVLIDN
Sbjct: 61 LPPRVISFEQQYDRFMESFRSLEKNTEGQPDSVVSLAKWRILNRLHDRNETLYYRVLIDN 120
Query: 121 IKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDG 180
IKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMI+NWP+ QVDMIVLTDG
Sbjct: 121 IKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIFNWPSTQVDMIVLTDG 180
Query: 181 SRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQ 240
SRILGLGDLGVQGIGIPIGKLD+YVAAAGINPQR+LPVMLDVGTNNQKLLED LYLGLRQ
Sbjct: 181 SRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRVLPVMLDVGTNNQKLLEDPLYLGLRQ 240
Query: 241 PRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTA 300
PRLEGEEYLSIVDEF+EAVHARWPKA+VQFEDFQ KWAFETL+RYRK+FCMFNDDIQGTA
Sbjct: 241 PRLEGEEYLSIVDEFVEAVHARWPKAVVQFEDFQAKWAFETLDRYRKKFCMFNDDIQGTA 300
Query: 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360
GVALAGLLGTVRAQG LTDFA+QKIVVVGAGSAGLGVLKMA+QA +RM G + A
Sbjct: 301 GVALAGLLGTVRAQGRPLTDFANQKIVVVGAGSAGLGVLKMALQAVSRMTGPS---ADPH 357
Query: 361 FFLLDKDGLITKERKNLDPAAAPFAKDPGDF--MGLREGASLLEVVRKVKPHVLLGLSGV 418
FFLLDK+GLITK+RK++DPAA PFAK + +GL+EGA L EVV+KVKPHVLLGLSGV
Sbjct: 358 FFLLDKNGLITKDRKDIDPAALPFAKAHHEIEGLGLQEGAGLAEVVKKVKPHVLLGLSGV 417
Query: 419 GGVFNEEV 426
GG+F+EEV
Sbjct: 418 GGIFHEEV 425
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Solanum tuberosum (taxid: 4113) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 9 |
| >sp|Q8L7K9|MAO2_ARATH NAD-dependent malic enzyme 2, mitochondrial OS=Arabidopsis thaliana GN=NAD-ME2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9SIU0|MAO1_ARATH NAD-dependent malic enzyme 1, mitochondrial OS=Arabidopsis thaliana GN=NAD-ME1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P37221|MAOM_SOLTU NAD-dependent malic enzyme 62 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1 | Back alignment and function description |
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| >sp|P37224|MAOM_AMAHP NAD-dependent malic enzyme 65 kDa isoform, mitochondrial OS=Amaranthus hypochondriacus PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6TU48|MAOX_DICDI NADP-dependent malic enzyme OS=Dictyostelium discoideum GN=malA PE=2 SV=1 | Back alignment and function description |
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| >sp|P06801|MAOX_MOUSE NADP-dependent malic enzyme OS=Mus musculus GN=Me1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8BMF3|MAON_MOUSE NADP-dependent malic enzyme, mitochondrial OS=Mus musculus GN=Me3 PE=1 SV=2 | Back alignment and function description |
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| >sp|P13697|MAOX_RAT NADP-dependent malic enzyme OS=Rattus norvegicus GN=Me1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q16798|MAON_HUMAN NADP-dependent malic enzyme, mitochondrial OS=Homo sapiens GN=ME3 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 439 | ||||||
| 255541510 | 602 | malic enzyme, putative [Ricinus communis | 0.968 | 0.705 | 0.894 | 0.0 | |
| 224063997 | 607 | predicted protein [Populus trichocarpa] | 0.970 | 0.701 | 0.890 | 0.0 | |
| 356520442 | 604 | PREDICTED: NAD-dependent malic enzyme 59 | 0.970 | 0.705 | 0.873 | 0.0 | |
| 356504809 | 604 | PREDICTED: NAD-dependent malic enzyme 59 | 0.970 | 0.705 | 0.871 | 0.0 | |
| 224127578 | 607 | predicted protein [Populus trichocarpa] | 0.970 | 0.701 | 0.876 | 0.0 | |
| 357514633 | 604 | Malic enzyme [Medicago truncatula] gi|35 | 0.970 | 0.705 | 0.868 | 0.0 | |
| 357507187 | 601 | Malic enzyme [Medicago truncatula] gi|35 | 0.965 | 0.705 | 0.849 | 0.0 | |
| 357507189 | 527 | Malic enzyme [Medicago truncatula] gi|35 | 0.965 | 0.804 | 0.849 | 0.0 | |
| 225454087 | 605 | PREDICTED: NAD-dependent malic enzyme 59 | 0.927 | 0.672 | 0.894 | 0.0 | |
| 356568348 | 600 | PREDICTED: NAD-dependent malic enzyme 59 | 0.963 | 0.705 | 0.854 | 0.0 |
| >gi|255541510|ref|XP_002511819.1| malic enzyme, putative [Ricinus communis] gi|223548999|gb|EEF50488.1| malic enzyme, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/426 (89%), Positives = 400/426 (93%), Gaps = 1/426 (0%)
Query: 1 MWNLARVAASVLSRSRRFSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGL 60
MW LAR A S RSRRFSTAIPGPC+VHKRG DILHDPWFNKDTGFPLTERDRLGLRGL
Sbjct: 1 MWKLARFATS-RCRSRRFSTAIPGPCIVHKRGADILHDPWFNKDTGFPLTERDRLGLRGL 59
Query: 61 LPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDN 120
LPPRVISFE QY RFMES+RSLEKNT+GQP+ VVSLAKWRILNRLHDRNETLYYRVLIDN
Sbjct: 60 LPPRVISFEHQYDRFMESYRSLEKNTQGQPDSVVSLAKWRILNRLHDRNETLYYRVLIDN 119
Query: 121 IKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDG 180
IKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPA+QVDMIVLTDG
Sbjct: 120 IKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAEQVDMIVLTDG 179
Query: 181 SRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQ 240
SRILGLGDLGVQGIGIPIGKLD+YVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQ
Sbjct: 180 SRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQ 239
Query: 241 PRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTA 300
PRLEGEEYLSIVDEFMEAV RWPKAIVQFEDFQMKWAFETL+RYRKRFCMFNDDIQGTA
Sbjct: 240 PRLEGEEYLSIVDEFMEAVFTRWPKAIVQFEDFQMKWAFETLQRYRKRFCMFNDDIQGTA 299
Query: 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360
GVALAGLLGTVRAQG L+DF QKIVVVGAGSAGLGVL MA+QA +RM+GNN+A N
Sbjct: 300 GVALAGLLGTVRAQGRPLSDFVKQKIVVVGAGSAGLGVLNMAIQAVSRMSGNNEASVNNN 359
Query: 361 FFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGG 420
FFLLDKDGLITKERKN+DPAAAPFAKD D GLREGA+L+EVV+K+KPHVLLGLSGVGG
Sbjct: 360 FFLLDKDGLITKERKNIDPAAAPFAKDLKDVEGLREGATLVEVVKKLKPHVLLGLSGVGG 419
Query: 421 VFNEEV 426
+FN+EV
Sbjct: 420 IFNDEV 425
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063997|ref|XP_002301340.1| predicted protein [Populus trichocarpa] gi|222843066|gb|EEE80613.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356520442|ref|XP_003528871.1| PREDICTED: NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356504809|ref|XP_003521187.1| PREDICTED: NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224127578|ref|XP_002320109.1| predicted protein [Populus trichocarpa] gi|222860882|gb|EEE98424.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357514633|ref|XP_003627605.1| Malic enzyme [Medicago truncatula] gi|355521627|gb|AET02081.1| Malic enzyme [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|357507187|ref|XP_003623882.1| Malic enzyme [Medicago truncatula] gi|355498897|gb|AES80100.1| Malic enzyme [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|357507189|ref|XP_003623883.1| Malic enzyme [Medicago truncatula] gi|355498898|gb|AES80101.1| Malic enzyme [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|225454087|ref|XP_002266697.1| PREDICTED: NAD-dependent malic enzyme 59 kDa isoform, mitochondrial [Vitis vinifera] gi|297745211|emb|CBI40291.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356568348|ref|XP_003552373.1| PREDICTED: NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 439 | ||||||
| TAIR|locus:2127038 | 607 | NAD-ME2 "AT4G00570" [Arabidops | 0.924 | 0.668 | 0.699 | 4e-154 | |
| TAIR|locus:2054085 | 623 | NAD-ME1 "AT2G13560" [Arabidops | 0.915 | 0.645 | 0.572 | 5.7e-123 | |
| MGI|MGI:1916679 | 604 | Me3 "malic enzyme 3, NADP(+)-d | 0.874 | 0.635 | 0.385 | 3.5e-68 | |
| MGI|MGI:97043 | 572 | Me1 "malic enzyme 1, NADP(+)-d | 0.861 | 0.660 | 0.378 | 4.4e-68 | |
| ZFIN|ZDB-GENE-041111-294 | 603 | me3 "malic enzyme 3, NADP(+)-d | 0.872 | 0.635 | 0.381 | 7.2e-68 | |
| UNIPROTKB|F1PQ35 | 604 | ME3 "Malic enzyme" [Canis lupu | 0.883 | 0.642 | 0.385 | 1.9e-67 | |
| UNIPROTKB|E9PMB9 | 581 | ME3 "Malic enzyme" [Homo sapie | 0.874 | 0.660 | 0.384 | 1.9e-67 | |
| UNIPROTKB|Q16798 | 604 | ME3 "NADP-dependent malic enzy | 0.874 | 0.635 | 0.384 | 1.9e-67 | |
| RGD|3074 | 572 | Me1 "malic enzyme 1, NADP(+)-d | 0.861 | 0.660 | 0.375 | 1.9e-67 | |
| UNIPROTKB|P13697 | 572 | Me1 "NADP-dependent malic enzy | 0.861 | 0.660 | 0.375 | 1.9e-67 |
| TAIR|locus:2127038 NAD-ME2 "AT4G00570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1503 (534.1 bits), Expect = 4.0e-154, P = 4.0e-154
Identities = 286/409 (69%), Positives = 323/409 (78%)
Query: 18 FSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFME 77
FSTAIPGPC+VHKRG DILHDPWFNKDTGFPLTE V++ QQ RF+E
Sbjct: 25 FSTAIPGPCIVHKRGADILHDPWFNKDTGFPLTERDRLGIRGLLPPRVMTCVQQCDRFIE 84
Query: 78 SFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVC 137
SFRSLE NT+G+P VV+LAKWR+LNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVC
Sbjct: 85 SFRSLENNTKGEPENVVALAKWRMLNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVC 144
Query: 138 QNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIP 197
QNYSGL+RRPRGMYFSAKDKGEMMSMIYNWPA QVDMIV+TDGSRILGLGDLGVQGIGIP
Sbjct: 145 QNYSGLYRRPRGMYFSAKDKGEMMSMIYNWPAPQVDMIVITDGSRILGLGDLGVQGIGIP 204
Query: 198 IGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFME 257
IGKLD+YVAAAGINPQR+LP+MLDVGTNN+KLL++ LYLG+RQPRLEGEEYL I+DEFME
Sbjct: 205 IGKLDMYVAAAGINPQRVLPIMLDVGTNNEKLLQNDLYLGVRQPRLEGEEYLEIIDEFME 264
Query: 258 AVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLS 317
A RWPKA+VQFEDFQ KWAF TLERYRK+FCMFNDD+Q RAQG
Sbjct: 265 AAFTRWPKAVVQFEDFQAKWAFGTLERYRKKFCMFNDDVQGTAGVALAGLLGTVRAQGRP 324
Query: 318 LTDFADQKIXXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377
++DF +QKI KMAVQA ARMAG +++ A F+L+DKDGL+T ER L
Sbjct: 325 ISDFVNQKIVVVGAGSAGLGVTKMAVQAVARMAGISESEATKNFYLIDKDGLVTTERTKL 384
Query: 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEV 426
DP A FAK+P + +REGAS++EVV+KV+PH FNEEV
Sbjct: 385 DPGAVLFAKNPAE---IREGASIVEVVKKVRPHVLLGLSGVGGIFNEEV 430
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| TAIR|locus:2054085 NAD-ME1 "AT2G13560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| MGI|MGI:1916679 Me3 "malic enzyme 3, NADP(+)-dependent, mitochondrial" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| MGI|MGI:97043 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-041111-294 me3 "malic enzyme 3, NADP(+)-dependent, mitochondrial" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PQ35 ME3 "Malic enzyme" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E9PMB9 ME3 "Malic enzyme" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q16798 ME3 "NADP-dependent malic enzyme, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| RGD|3074 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P13697 Me1 "NADP-dependent malic enzyme" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8L7K9 | MAO2_ARATH | 1, ., 1, ., 1, ., 3, 9 | 0.8159 | 0.9316 | 0.6738 | yes | no |
| P37225 | MAON_SOLTU | 1, ., 1, ., 1, ., 3, 9 | 0.8574 | 0.9635 | 0.7038 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.976 |
| 3rd Layer | 1.1.1.39 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 439 | |||
| PLN03129 | 581 | PLN03129, PLN03129, NADP-dependent malic enzyme; P | 0.0 | |
| PRK13529 | 563 | PRK13529, PRK13529, malate dehydrogenase; Provisio | 0.0 | |
| PTZ00317 | 559 | PTZ00317, PTZ00317, NADP-dependent malic enzyme; P | 0.0 | |
| pfam00390 | 182 | pfam00390, malic, Malic enzyme, N-terminal domain | 1e-104 | |
| COG0281 | 432 | COG0281, SfcA, Malic enzyme [Energy production and | 3e-65 | |
| cd05312 | 279 | cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma | 1e-44 | |
| pfam03949 | 255 | pfam03949, Malic_M, Malic enzyme, NAD binding doma | 2e-42 | |
| smart00919 | 231 | smart00919, Malic_M, Malic enzyme, NAD binding dom | 9e-33 | |
| cd00762 | 254 | cd00762, NAD_bind_malic_enz, NAD(P) binding domain | 1e-20 | |
| PRK12862 | 763 | PRK12862, PRK12862, malic enzyme; Reviewed | 1e-10 | |
| PRK07232 | 752 | PRK07232, PRK07232, bifunctional malic enzyme oxid | 2e-10 | |
| cd05311 | 226 | cd05311, NAD_bind_2_malic_enz, NAD(P) binding doma | 9e-08 | |
| PRK12861 | 764 | PRK12861, PRK12861, malic enzyme; Reviewed | 3e-05 | |
| cd01620 | 317 | cd01620, Ala_dh_like, Alanine dehydrogenase and re | 0.003 |
| >gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Score = 700 bits (1808), Expect = 0.0
Identities = 233/421 (55%), Positives = 280/421 (66%), Gaps = 21/421 (4%)
Query: 8 AASVLSRSRRFSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVIS 67
V P + G D+L DP +NK F TERDRLGLRGLLPP V+S
Sbjct: 18 VEDVYGEDAATEEQPVTPWVRVASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLS 77
Query: 68 FEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPI 127
E Q RFME+ R+LE LAK+R L L +RNE L+YRVLIDNI++ PI
Sbjct: 78 QELQVKRFMENLRALE----------SPLAKYRALMDLQERNERLFYRVLIDNIEELLPI 127
Query: 128 IYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLG 187
+YTPTVG CQ Y LFRRPRG+Y S KDKG ++SM+ NWP + V +IV+TDG RILGLG
Sbjct: 128 VYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLG 187
Query: 188 DLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEE 247
DLGVQG+GIP+GKLD+Y AA GI P +LPV +DVGTNN+KLL D Y+GLRQPRL GEE
Sbjct: 188 DLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEE 247
Query: 248 YLSIVDEFMEAVHARW-PKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAG 306
Y +VDEFMEAV RW PK +VQFEDF K AF L+RYR FNDDIQGTA VALAG
Sbjct: 248 YDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAG 307
Query: 307 LLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366
LL +RA G D ADQ+I+ GAG AG G+ ++ A +R G ++ AR + +L+D
Sbjct: 308 LLAALRATG---GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDS 364
Query: 367 DGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEE 425
GL+TK RK+ L P PFA D GASLLE V+ +KP VL+GLSGVGG F +E
Sbjct: 365 KGLVTKSRKDSLQPFKKPFAHD------HEPGASLLEAVKAIKPTVLIGLSGVGGTFTKE 418
Query: 426 V 426
V
Sbjct: 419 V 419
|
Length = 581 |
| >gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215894 pfam00390, malic, Malic enzyme, N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
| >gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
| >gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
| >gnl|CDD|183798 PRK12861, PRK12861, malic enzyme; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related dehydrogenases | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 439 | |||
| KOG1257 | 582 | consensus NADP+-dependent malic enzyme [Energy pro | 100.0 | |
| PRK13529 | 563 | malate dehydrogenase; Provisional | 100.0 | |
| PTZ00317 | 559 | NADP-dependent malic enzyme; Provisional | 100.0 | |
| PLN03129 | 581 | NADP-dependent malic enzyme; Provisional | 100.0 | |
| PF00390 | 182 | malic: Malic enzyme, N-terminal domain; InterPro: | 100.0 | |
| COG0281 | 432 | SfcA Malic enzyme [Energy production and conversio | 100.0 | |
| PRK12862 | 763 | malic enzyme; Reviewed | 100.0 | |
| PRK12861 | 764 | malic enzyme; Reviewed | 100.0 | |
| PRK07232 | 752 | bifunctional malic enzyme oxidoreductase/phosphotr | 100.0 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 100.0 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 100.0 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 100.0 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 99.88 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 98.58 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.42 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.1 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.78 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.62 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 96.53 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 96.52 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.25 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.89 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 95.7 | |
| PLN02494 | 477 | adenosylhomocysteinase | 95.69 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 95.59 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 95.54 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 95.48 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.17 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 95.05 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 95.03 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 94.88 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 94.83 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 94.73 | |
| PLN02477 | 410 | glutamate dehydrogenase | 94.62 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.6 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 94.59 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 94.46 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 94.21 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 94.18 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.84 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 93.71 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 93.7 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 93.69 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.64 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 93.63 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 93.62 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 93.55 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 93.39 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.16 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.13 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 92.87 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 92.52 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 92.48 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.26 | |
| PLN02928 | 347 | oxidoreductase family protein | 92.01 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 91.97 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.94 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 91.89 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 91.88 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 91.84 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.79 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 91.77 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 91.76 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 91.75 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 91.67 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 91.59 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.37 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 91.26 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 90.95 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.76 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.72 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.47 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.35 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 90.29 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.26 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 90.0 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 89.98 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.88 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.8 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 89.31 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.29 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 89.11 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.94 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.79 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 88.72 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 88.67 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.63 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.61 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 88.6 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.53 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 88.2 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 87.96 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.86 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.81 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.81 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 87.71 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.71 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 87.65 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 87.41 | |
| PRK02842 | 427 | light-independent protochlorophyllide reductase su | 87.33 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 87.3 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 87.25 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 87.17 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 87.08 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 87.05 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 86.63 | |
| PLN00106 | 323 | malate dehydrogenase | 86.59 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.54 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 86.39 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 86.33 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 86.11 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 86.03 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 85.99 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 85.9 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 85.85 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.52 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.52 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 85.24 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 85.16 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 85.16 | |
| PRK08223 | 287 | hypothetical protein; Validated | 85.09 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 85.06 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 85.0 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 84.75 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 84.67 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 84.39 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 84.36 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 84.2 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 84.03 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 83.88 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 83.55 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 83.44 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 83.33 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 83.11 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 82.91 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 82.88 | |
| KOG2337 | 669 | consensus Ubiquitin activating E1 enzyme-like prot | 82.83 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 82.74 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 82.62 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 82.38 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 82.15 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 82.06 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 81.95 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 81.94 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 81.63 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 81.48 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 81.26 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 81.26 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 81.08 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 81.08 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 80.69 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 80.64 | |
| cd01979 | 396 | Pchlide_reductase_N Pchlide_reductase_N: N protein | 80.48 |
| >KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-160 Score=1235.57 Aligned_cols=395 Identities=54% Similarity=0.908 Sum_probs=388.3
Q ss_pred ceeeccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCccccHHHHHHHHHHHHhchhcccCCCCCCcCchhHHHHHHH
Q 013638 25 PCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNR 104 (439)
Q Consensus 25 ~~~~~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~k~~~L~~ 104 (439)
++..+++|+++|+||++|||+|||.+||++|+|||||||.|.|+|+|+.||+.+|++++ ++|+||+||+.
T Consensus 24 ~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~----------~~l~ky~~L~~ 93 (582)
T KOG1257|consen 24 PVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLT----------SPLAKYIYLMD 93 (582)
T ss_pred ccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhcc----------chHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred hhcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceee
Q 013638 105 LHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRIL 184 (439)
Q Consensus 105 L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rIL 184 (439)
||+|||+|||+++++|++|+||||||||||+|||+||++||+|+|||||++|+|||.++|+|||.++|++||||||||||
T Consensus 94 L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerIL 173 (582)
T KOG1257|consen 94 LQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERIL 173 (582)
T ss_pred HHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-
Q 013638 185 GLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW- 263 (439)
Q Consensus 185 GLGDlG~~Gm~I~iGKl~LY~a~aGI~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~- 263 (439)
||||+|++|||||+||++||||||||+|++|||||||||||||+||+||+|+|+|++|++|+|||+|+||||+||+++|
T Consensus 174 GLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG 253 (582)
T KOG1257|consen 174 GLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYG 253 (582)
T ss_pred cccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCchHHHHHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHH
Q 013638 264 PKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAV 343 (439)
Q Consensus 264 P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~ 343 (439)
|+++||||||+++|||++|+|||+++|||||||||||||+|||||+|+|++|++|+| ++|||+|||+||+|||+||+
T Consensus 254 ~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd---~~ilf~GAG~A~~GIA~l~v 330 (582)
T KOG1257|consen 254 PNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSD---HVILFLGAGEAALGIANLIV 330 (582)
T ss_pred cceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCcccc---ceEEEecCchHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHcCCChhhhcCeEEEEecccccccCCC-CCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCC
Q 013638 344 QAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVF 422 (439)
Q Consensus 344 ~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~-~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~F 422 (439)
.+|+ ++|+|+|||+++|||||++|||+.+|+ +++++|++||++.++| ++|+|||+.+|||||||+|++||+|
T Consensus 331 ~~m~-~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~------~~L~e~V~~vKPtvLiG~S~~~g~F 403 (582)
T KOG1257|consen 331 MAMV-KEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEI------KDLEEAVKEVKPTVLIGASGVGGAF 403 (582)
T ss_pred HHHH-HcCCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHH------HHHHHHHHhcCCcEEEecccCCccC
Confidence 9999 689999999999999999999999996 9999999999998654 5899999999999999999999999
Q ss_pred CHHHHHHHhccCCCCCC
Q 013638 423 NEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 423 teevV~~Ma~~~~~pi~ 439 (439)
||||||+|++++++|||
T Consensus 404 teevl~~Ma~~~erPiI 420 (582)
T KOG1257|consen 404 TEEVLRAMAKSNERPII 420 (582)
T ss_pred CHHHHHHHHhcCCCceE
Confidence 99999999999999997
|
|
| >PRK13529 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PTZ00317 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
| >PLN03129 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
| >PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
| >COG0281 SfcA Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
|---|
| >PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
|---|
| >PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
| >PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional | Back alignment and domain information |
|---|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
| >KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 439 | ||||
| 1llq_A | 605 | Crystal Structure Of Malic Enzyme From Ascaris Suum | 9e-73 | ||
| 2aw5_A | 575 | Crystal Structure Of A Human Malic Enzyme Length = | 9e-71 | ||
| 1gq2_A | 555 | Malic Enzyme From Pigeon Liver Length = 555 | 2e-68 | ||
| 1gz3_A | 554 | Molecular Mechanism For The Regulation Of Human Mit | 7e-62 | ||
| 1efk_A | 584 | Structure Of Human Malic Enzyme In Complex With Ket | 7e-61 | ||
| 1qr6_A | 584 | Human Mitochondrial Nad(P)-Dependent Malic Enzyme L | 8e-61 | ||
| 1do8_A | 564 | Crystal Structure Of A Closed Form Of Human Mitocho | 8e-61 | ||
| 1gz4_A | 551 | Molecular Mechanism Of The Regulation Of Human Mito | 2e-60 |
| >pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum Complexed With Nicotinamide Adenine Dinucleotide Length = 605 | Back alignment and structure |
|
| >pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme Length = 575 | Back alignment and structure |
| >pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver Length = 555 | Back alignment and structure |
| >pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 554 | Back alignment and structure |
| >pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With Ketomalonate Length = 584 | Back alignment and structure |
| >pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme Length = 584 | Back alignment and structure |
| >pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme Length = 564 | Back alignment and structure |
| >pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 551 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555 | Back alignment and structure |
|---|
Score = 553 bits (1427), Expect = 0.0
Identities = 170/398 (42%), Positives = 247/398 (62%), Gaps = 21/398 (5%)
Query: 30 KRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQ 89
K+G ++L DP NK F L ER +L + GLLPP + + Q +++F L +
Sbjct: 1 KKGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSD---- 56
Query: 90 PNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRG 149
L ++ +L L DRNE L+Y+VL +I+ F PI+YTPTVGL CQ+Y FRRPRG
Sbjct: 57 ------LDRYILLMSLQDRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRG 110
Query: 150 MYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAG 209
++ + D+G + +M+ +WP + IV+TDG RILGLGDLG G+GIP+GKL +Y A G
Sbjct: 111 LFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGG 170
Query: 210 INPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP-KAIV 268
+ P + LPVMLDVGT+N+ LL+D LY+GLR R+ G+ Y ++DEFMEAV +R+ ++
Sbjct: 171 VKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLI 230
Query: 269 QFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVV 328
QFEDF AF L +YR ++C FNDDIQGTA VA+AGLL +R L+ D ++
Sbjct: 231 QFEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLS---DHTVLF 287
Query: 329 VGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP 388
GAG A LG+ + V A + G + A + +++D GLI K R +L P FA +
Sbjct: 288 QGAGEAALGIANLIVMAMQKE-GVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEH 346
Query: 389 GDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEV 426
E +L ++V+ +KP VL+G++ +GG F +++
Sbjct: 347 ------CEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQI 378
|
| >1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564 | Back alignment and structure |
|---|
| >1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605 | Back alignment and structure |
|---|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} Length = 487 | Back alignment and structure |
|---|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} Length = 398 | Back alignment and structure |
|---|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* Length = 388 | Back alignment and structure |
|---|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* Length = 439 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 439 | |||
| 1gq2_A | 555 | Malic enzyme; oxidoreductase, pigeon liver, NADP-d | 100.0 | |
| 1pj3_A | 564 | NAD-dependent malic enzyme, mitochondrial; oxidati | 100.0 | |
| 1o0s_A | 605 | NAD-ME, NAD-dependent malic enzyme; oxidoreductase | 100.0 | |
| 3nv9_A | 487 | Malic enzyme; rossmann fold, oxidoreductase; 2.25A | 100.0 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 100.0 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 100.0 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 100.0 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.44 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.38 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.22 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.53 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.4 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.07 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 96.48 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.44 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.24 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.23 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.08 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.99 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 95.89 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.83 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 95.8 | |
| 4fcc_A | 450 | Glutamate dehydrogenase; protein complex, rossmann | 95.7 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.7 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 95.54 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 95.4 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.32 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 95.16 | |
| 3r3j_A | 456 | Glutamate dehydrogenase; rossman fold, oxidoreduct | 95.15 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 95.11 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 94.9 | |
| 2bma_A | 470 | Glutamate dehydrogenase (NADP+); malaria, drug des | 93.52 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 93.43 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 93.29 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 93.03 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 93.02 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 92.92 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 92.91 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 92.81 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 92.73 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 92.69 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 92.46 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 92.4 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 92.26 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 92.25 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 92.24 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 91.86 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 91.38 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 90.93 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 90.93 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 90.9 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 90.7 | |
| 1bgv_A | 449 | Glutamate dehydrogenase; oxidoreductase; HET: GLU; | 90.55 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 90.43 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 90.42 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 90.18 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 89.96 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 89.75 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 89.64 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 89.46 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 88.33 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 88.13 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 87.78 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 87.77 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 87.7 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 87.54 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 87.5 | |
| 3mw9_A | 501 | GDH 1, glutamate dehydrogenase 1; allostery, inhib | 87.24 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 87.12 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 87.12 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 86.63 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 86.08 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 85.99 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 85.85 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 85.81 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 85.47 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 85.38 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 85.34 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 85.21 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 85.17 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 84.94 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 84.85 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 84.84 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 84.44 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 83.69 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 83.66 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 83.31 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 83.21 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 83.1 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 83.0 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 82.95 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 81.9 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 81.7 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 81.38 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 81.21 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 80.97 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 80.78 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 80.69 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 80.44 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 80.28 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 80.27 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 80.07 |
| >1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-154 Score=1207.88 Aligned_cols=389 Identities=44% Similarity=0.835 Sum_probs=382.9
Q ss_pred CccccccCCCCCcCCCCChHHhhhcCCCCCCCCccccHHHHHHHHHHHHhchhcccCCCCCCcCchhHHHHHHHhhcccc
Q 013638 31 RGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNE 110 (439)
Q Consensus 31 ~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~k~~~L~~L~~~Ne 110 (439)
+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||++++ ++|+||+||++||++||
T Consensus 2 ~G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~----------~~l~k~~~L~~L~~~Ne 71 (555)
T 1gq2_A 2 KGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLT----------SDLDRYILLMSLQDRNE 71 (555)
T ss_dssp CTTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHCH
T ss_pred ChhhhccCCcccCCCCCCHHHHHHCCCccCCCCCcCCHHHHHHHHHHHHhcCC----------CcHHHHHHHHHhcCcce
Confidence 69999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred hhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCC
Q 013638 111 TLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLG 190 (439)
Q Consensus 111 ~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG 190 (439)
+||||++.+|++|+|||+||||||++|++||++||+|+|||||++|+|+++++++|||.++|++||||||||||||||||
T Consensus 72 ~Lfy~ll~~~~~e~lpivYTP~V~~ac~~~s~i~~~p~g~yis~~d~~~i~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G 151 (555)
T 1gq2_A 72 KLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLG 151 (555)
T ss_dssp HHHHHHHHHTHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHHTSSCSCCCEEEEECSSSCGGGCCCG
T ss_pred eeehhhHhhhHHHhcCcccCchHHHHHHHHHHHhcChhhhhcccCCHHHHHHHHhcCCCCCcEEEEEEccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-CceEEE
Q 013638 191 VQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAIVQ 269 (439)
Q Consensus 191 ~~Gm~I~iGKl~LY~a~aGI~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~-P~~~Iq 269 (439)
++||+|||||++|||+||||||++|||||||+|||||+||+||+||||||+|++|++||+|+||||++|+.+| |+++||
T Consensus 152 ~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYlG~r~~Rv~g~eyd~fvdefv~av~~~fGp~~~I~ 231 (555)
T 1gq2_A 152 CYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQ 231 (555)
T ss_dssp GGGGHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCccccchhHHHHhHhccCCChhheeeeEeecCCCchhhcCCCccCCcCCCCCchHHHHHHHHHHHHHHHHhhCCCcEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred EecCCCchHHHHHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHH
Q 013638 270 FEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARM 349 (439)
Q Consensus 270 fEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~ 349 (439)
||||+++|||+||+|||++||||||||||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||+++|+ +
T Consensus 232 ~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d---~riv~~GAGaAg~gia~ll~~~~~-~ 307 (555)
T 1gq2_A 232 FEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSD---HTVLFQGAGEAALGIANLIVMAMQ-K 307 (555)
T ss_dssp ECSCCHHHHHHHHHHHTTTSEEEETTTHHHHHHHHHHHHHHHHHHTSCGGG---CCEEEECCSHHHHHHHHHHHHHHH-H
T ss_pred ecccCCccHHHHHHHHhccCCEecCccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHHHHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999999 6
Q ss_pred cCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 350 AGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 350 ~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
+|+|+|||+++|||||++|||+++|++|+++|++||+++++ .++|+|||+++|||||||+|++||+||||||++
T Consensus 308 ~G~~~eeA~~~i~~~D~~Gli~~~r~~l~~~k~~~A~~~~~------~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~ 381 (555)
T 1gq2_A 308 EGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEHCE------MKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQD 381 (555)
T ss_dssp HTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCBSCCC------CCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHH
T ss_pred cCCChHHHhCcEEEEECCCeeeCCCCCchHHHHHHHhhcCC------CCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHH
Confidence 89999999999999999999999998999999999998642 468999999999999999999999999999999
Q ss_pred HhccCCCCCC
Q 013638 430 FLCFIPCFIF 439 (439)
Q Consensus 430 Ma~~~~~pi~ 439 (439)
||++|++|||
T Consensus 382 Ma~~~~~PII 391 (555)
T 1gq2_A 382 MAAFNKRPII 391 (555)
T ss_dssp HHHHCSSCEE
T ss_pred HHhcCCCCEE
Confidence 9999999997
|
| >1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* | Back alignment and structure |
|---|
| >1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* | Back alignment and structure |
|---|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} | Back alignment and structure |
|---|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
| >4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E | Back alignment and structure |
|---|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
| >3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
| >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
| >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A | Back alignment and structure |
|---|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
| >3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* | Back alignment and structure |
|---|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 439 | ||||
| d1gq2a2 | 257 | c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent | 1e-130 | |
| d1pj3a2 | 259 | c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent | 1e-129 | |
| d1o0sa2 | 294 | c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent | 1e-129 | |
| d1o0sa1 | 308 | c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent | 1e-27 | |
| d1pj3a1 | 294 | c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent | 3e-24 | |
| d1gq2a1 | 298 | c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent | 5e-23 | |
| d1vl6a1 | 222 | c.2.1.7 (A:155-376) Malate oxidoreductase (malic e | 1e-14 | |
| d1vl6a2 | 154 | c.58.1.3 (A:1-154) Malate oxidoreductase (malic en | 2e-06 |
| >d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Score = 372 bits (958), Expect = e-130
Identities = 125/267 (46%), Positives = 175/267 (65%), Gaps = 11/267 (4%)
Query: 30 KRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQ 89
K+G ++L DP NK F L ER +L + GLLPP + + Q +++F L +
Sbjct: 1 KKGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSD---- 56
Query: 90 PNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRG 149
L ++ +L L DRNE L+Y+VL +I+ F PI+YTPTVGL CQ+Y FRRPRG
Sbjct: 57 ------LDRYILLMSLQDRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRG 110
Query: 150 MYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAG 209
++ + D+G + +M+ +WP + IV+TDG RILGLGDLG G+GIP+GKL +Y A G
Sbjct: 111 LFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGG 170
Query: 210 INPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP-KAIV 268
+ P + LPVMLDVGT+N+ LL+D LY+GLR R+ G+ Y ++DEFMEAV +R+ ++
Sbjct: 171 VKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLI 230
Query: 269 QFEDFQMKWAFETLERYRKRFCMFNDD 295
QFEDF AF L +YR ++C FNDD
Sbjct: 231 QFEDFANANAFRLLHKYRNKYCTFNDD 257
|
| >d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 259 | Back information, alignment and structure |
|---|
| >d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 294 | Back information, alignment and structure |
|---|
| >d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308 | Back information, alignment and structure |
|---|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298 | Back information, alignment and structure |
|---|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 222 | Back information, alignment and structure |
|---|
| >d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 154 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 439 | |||
| d1gq2a2 | 257 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 100.0 | |
| d1pj3a2 | 259 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 100.0 | |
| d1o0sa2 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Pig r | 100.0 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 100.0 | |
| d1o0sa1 | 308 | Mitochondrial NAD(P)-dependent malic enzyme {Pig r | 100.0 | |
| d1gq2a1 | 298 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 100.0 | |
| d1vl6a2 | 154 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 100.0 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 99.97 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.64 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.83 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.74 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 94.94 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.86 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.66 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 94.65 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 94.38 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 94.26 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 93.35 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 93.28 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 93.27 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 93.18 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 92.9 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 92.77 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 92.75 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 92.68 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 92.55 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 92.42 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 92.28 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 92.08 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 92.01 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 91.09 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 90.98 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 90.92 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 90.81 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 90.75 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 90.74 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 90.48 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 89.97 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 89.41 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 89.15 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 89.11 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 88.93 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 88.61 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 88.53 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 88.38 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 87.69 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 87.29 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 86.88 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 86.81 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 86.39 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 86.37 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 86.16 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 85.89 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 85.83 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 85.78 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 85.73 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 85.67 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 85.37 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 85.15 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 85.07 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 84.86 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 84.66 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 84.57 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 84.41 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 84.3 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 84.11 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 83.88 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 83.86 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 83.72 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 83.66 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 83.47 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 83.26 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 83.2 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 82.16 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 82.11 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 82.08 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 82.08 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 82.06 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 81.72 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 81.49 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 81.13 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 80.41 |
| >d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Probab=100.00 E-value=1.7e-118 Score=861.71 Aligned_cols=256 Identities=49% Similarity=0.967 Sum_probs=254.1
Q ss_pred cCccccccCCCCCcCCCCChHHhhhcCCCCCCCCccccHHHHHHHHHHHHhchhcccCCCCCCcCchhHHHHHHHhhccc
Q 013638 30 KRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRN 109 (439)
Q Consensus 30 ~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~k~~~L~~L~~~N 109 (439)
++|.++|++|.+|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||++||++|
T Consensus 1 krG~~lL~~p~~NKGtAFt~~ER~~l~l~GLLP~~v~tle~Qv~r~~~~~~~~~----------~~l~Ky~yL~~L~~~N 70 (257)
T d1gq2a2 1 KKGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLT----------SDLDRYILLMSLQDRN 70 (257)
T ss_dssp CCTTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHC
T ss_pred CChHHHhcCCCccCccCCCHHHHHHcCCccCCCCCccCHHHHHHHHHHHHHhcC----------CcHHHHHHHHHHHHhC
Confidence 489999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred chhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCC
Q 013638 110 ETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDL 189 (439)
Q Consensus 110 e~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDl 189 (439)
|+|||+++++|++||||||||||||+||++||++||+|||||||++|+|+|.++++|||.++|++||||||+||||||||
T Consensus 71 e~LFY~ll~~~~~e~~PivYTPTVG~Ac~~ys~~yr~prGlyis~~d~g~i~~il~nwp~~~V~~iVVTDG~rILGlGD~ 150 (257)
T d1gq2a2 71 EKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDL 150 (257)
T ss_dssp HHHHHHHHHHTHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHHTSSCSCCCEEEEECSSSCGGGCCC
T ss_pred hHHHHHHHHHHHHHhcCcccCccHHHHHHHHhhhhccccceeeccCChHHHHHHHHhCCCCCeeEEEEecCceeeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCC-ceEE
Q 013638 190 GVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP-KAIV 268 (439)
Q Consensus 190 G~~Gm~I~iGKl~LY~a~aGI~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~P-~~~I 268 (439)
|+||||||+||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++||+||||||+||+++|| +++|
T Consensus 151 G~~Gm~I~~gKl~lyta~~Gi~P~~~LPv~LDvGTnNe~LL~DP~YlG~R~~R~~g~eY~~fvdefv~av~~~~p~~~~i 230 (257)
T d1gq2a2 151 GCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLI 230 (257)
T ss_dssp GGGGGHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred CcCccchhhhHHHHHHHhcCCCHhhcCCeeecCCCChHHHhcCcccccccCCCCcchHHHHHHHHHHHHHHHhCCCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997 8999
Q ss_pred EEecCCCchHHHHHHHHhhcccccccC
Q 013638 269 QFEDFQMKWAFETLERYRKRFCMFNDD 295 (439)
Q Consensus 269 qfEDf~~~naf~iL~ryr~~~~~FNDD 295 (439)
|||||+++|||++|+|||+++||||||
T Consensus 231 ~~EDf~~~na~~~L~~yr~~~~~FNDD 257 (257)
T d1gq2a2 231 QFEDFANANAFRLLHKYRNKYCTFNDD 257 (257)
T ss_dssp EECSCCHHHHHHHHHHHTTTSEEEETT
T ss_pred ehhhcCCchHHHHHHHHccCCCccCCC
Confidence 999999999999999999999999999
|
| >d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} | Back information, alignment and structure |
|---|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} | Back information, alignment and structure |
|---|
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
| >d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|