Citrus Sinensis ID: 013643

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MSLLNPKISSPFPFPHSLHSPPQSKFHKLFPSQPLNLPTAATTKLYSLSPLQQEPDYLLLQNEDRVIGDCLVFEEGVFEDPYLENDNVPPPRKPRRSRGKQNVVQVEAENLVPDKWKQVQEELNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLSQLNPPLVLDKPSTFPTDAKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTSK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccEEEEEEEEEcccccccccccccccccccHHHHHcccccEEEEccccccccccHHHHHHHHHHccccccHHHHHHccccccccccccHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccccEEHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHccHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccEEEEEEEEEcccccccccccccccccHHHHHHccccEEEEEEEccccccHHccccccHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
msllnpkisspfpfphslhsppqskfhklfpsqplnlptaattklyslsplqqepdylllqnedrvigdclvfeegvfedpylendnvppprkprrsrgkqnvVQVEAENLVPDKWKQVQEELNLTKKEKRQIALQIEFGSRvekkkqgylplnslDLKEYLAYKEAKlsqlnpplvldkpstfptdakeseedrdcgfqdfvnsssstctqrvppknpkwavygrglddvseffnsgnydppdkksdgprrklfTKEEKVLLNKKlphlatatskkwlplhslaasgEFYFVDALLkhnvdinavdkdGLTALHKAIIGKKQAVTNYLLresanpfvvdedgaTLLHYAVQTASSPAIKILLLYNVDinlqdndgwtplhLAVQARRTDIVKLLLIKGadktlknrdgltpldlclysgrdtrtFGMIKLLKQLPTSK
Flexible Loop (DISEMBL)
msllnpkisspfpfpHSLHSPPQSKFHKLFPSQPLNLPTAATTKLYSLSPLQQEPDYLLLQNEDRVIGDCLVFEEgvfedpylendnvppprkprrsrgkqnvvqveaenlvpdkwkQVQEELNLTKKEKRQIALqiefgsrvekkkqgylpLNSLDLKEYLAYKEAKlsqlnpplvldkpSTFPTDAKESEEDRDCGFQDFvnsssstctqrvppknpkWAVYGRGLDDVSEFfnsgnydppdkksdgprRKLFTKEEKVLlnkklphlatatskkwlPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIkgadktlknrdgltpldlclysgrdtrtFGMIKllkqlptsk
Low Complexity Region (SEG)
MSLLNPKIsspfpfphslhsppqsKFHKLFPSQPLNLPTAATTKLYSLSPLQQEPDYLLLQNEDRVIGDCLVFEEGVFEDPYLENDNVppprkprrsrGKQNVVQVEAENLVPDKWKQVQEELNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLSQLNPPLVLDKPSTFPTDAKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTSK
Disordered region (IsUnstruct)
******************************************TKLYSLSPLQQEPDYLLLQNEDRVIGDCLVFEEGVFEDPYL************************************************QIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL***************************************************WAVYGRGLDDVSEFF************************KVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL*******
Disordered Region (DISOPRED)
*****************************************************EPDYLLLQNEDRVIGDCLVFEEGVFEDPYLENDNVPPPRKPRRSRGKQNVVQVEAENLVPDKWKQVQEELNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLSQLNPPLVLDKPSTFPTDAKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP***
Disordered Region (DISEMBL)
MSLLNPKISSPFPFPHSLHSPPQSKFHKLFPSQPLNLPTAATTKLYSLSPLQQEPDYLLLQNEDRVIGDCLVFEEGVFEDPYLENDN***************VVQVEAENLVPDKWKQVQEELNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLSQLNPPLVLDKPSTF************CGFQDFVN***********PKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTSK
Disordered Region (DISPRO)
**********************************************SLSPLQQEPDYLLLQNEDRVIGDCLVFEEGVFEDPYLENDNVPPPRKPRRSRGKQNVVQVEAENLVPDKWKQVQEELNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLSQLNPPLVLDKPSTFPTDAKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLLNPKISSPFPFPHSLHSPPQSKFHKLFPSQPLNLPTAATTKLYSLSPLQQEPDYLLLQNEDRVIGDCLVFEEGVFEDPYLENDNVPPPRKPRRSRGKQNVVQVEAENLVPDKWKQVQEELNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLSQLNPPLVLDKPSTFPTDAKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	439	2.2.26 [Sep-21-2011]
Q05753	435	Ankyrin repeat domain-con	yes	no	0.929	0.937	0.567	1e-138
Q9SQK3	315	Ankyrin repeat domain-con	no	no	0.421	0.587	0.505	2e-48
Q9Z148	1263	Histone-lysine N-methyltr	yes	no	0.382	0.133	0.306	5e-20
Q96KQ7	1210	Histone-lysine N-methyltr	yes	no	0.382	0.138	0.300	6e-20
Q9Z2X3	231	26S proteasome non-ATPase	no	no	0.314	0.597	0.376	9e-19
O75832	226	26S proteasome non-ATPase	no	no	0.314	0.610	0.384	2e-18
Q9Z2X2	231	26S proteasome non-ATPase	no	no	0.314	0.597	0.369	4e-18
F8W2M1	904	E3 ubiquitin-protein liga	yes	no	0.318	0.154	0.361	7e-18
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.284	0.028	0.365	1e-17
Q8BZ25	745	Ankyrin repeat and protei	no	no	0.339	0.2	0.346	2e-17

>sp|Q05753|AKRP_ARATH Ankyrin repeat domain-containing protein, chloroplastic OS=Arabidopsis thaliana GN=AKRP PE=1 SV=2

 Score =  490 bits (1262), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 252/444 (56%), Positives = 327/444 (73%), Gaps = 36/444 (8%)

Query: 1   MSLLNPKISSPFPFPHSLHSPPQSKFHKLFPSQPLNLPTAATTKLYSLSPLQQEPDYLLL 60
           +SLL P+ +SP     SLHS         FP++  +L  ++ T +         PD    
Sbjct: 10  ISLLLPR-TSPSRLSPSLHSLA-------FPTRLRSLSYSSQTSIL--------PD---- 49

Query: 61  QNEDRVIGDCLVFEEGVFEDPYLENDNVPPPRKPRRS--RG---KQNVVQVEAENLVPDK 115
             +D ++GDCLV+E+GVFEDPYL+ +     ++ R+   RG   + +  ++E ENLVP++
Sbjct: 50  AGDDFIVGDCLVYEDGVFEDPYLDKEVTQVAKQERKKNRRGGAKRLDESEIEPENLVPEE 109

Query: 116 WKQVQEELNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLSQLNPP 175
           W+ +Q E+NLTKK+KR+IA ++EFG RVEKK+QG +PL  +DL ++L YKEAKL+QL P 
Sbjct: 110 WRDIQAEVNLTKKDKRKIAQEMEFGVRVEKKRQGLIPLRKVDLNDFLTYKEAKLAQLRP- 168

Query: 176 LVLDKPSTFPTDAKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFF 235
           ++LDKP  F  D+  S +           ++ S+ ++RV PKNP+WAVYG+G D V++FF
Sbjct: 169 VILDKPGNFSDDSGASSDG---------ETAVSSPSERVAPKNPRWAVYGKGFDHVAKFF 219

Query: 236 NSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDA 295
           NS  YDP DKKSDGPR KL +KEEK +LN + P LA ATSKKWLPLH+LAA GEFY VD+
Sbjct: 220 NSDKYDPSDKKSDGPR-KLLSKEEKFMLNSRNPDLAVATSKKWLPLHTLAACGEFYLVDS 278

Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355
           LLKHN+DINA D  GLT LH+AIIGKKQA+TNYLLRESANPFV+D++GATL+HYAVQTAS
Sbjct: 279 LLKHNLDINATDVGGLTVLHRAIIGKKQAITNYLLRESANPFVLDDEGATLMHYAVQTAS 338

Query: 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
           +P IK+LLLYN DIN QD DGWTPLH+AVQARR+DIVKLLLIKGAD  +KN+DGLTPL L
Sbjct: 339 APTIKLLLLYNADINAQDRDGWTPLHVAVQARRSDIVKLLLIKGADIEVKNKDGLTPLGL 398

Query: 416 CLYSGRDTRTFGMIKLLKQLPTSK 439
           CLY GR+ RT+ ++KLLK+ P S+
Sbjct: 399 CLYLGREIRTYEVMKLLKEFPLSR 422

Involved in the initial differentiation of the proplastid during the embryo development and in plastid differentiation linked to cell differentiation, morphogenesis and organogenesis during the plant life cycle.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SQK3|EM506_ARATH Ankyrin repeat domain-containing protein EMB506, chloroplastic OS=Arabidopsis thaliana GN=EMB506 PE=1 SV=1

 Score =  194 bits (492), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 133/186 (71%), Gaps = 1/186 (0%)

Query: 253 KLFTKEEKVLLNK-KLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGL 311
           +L   EE+V+L + + P+L   ++K W PL +LA S +   +D L+++ +DI+ VDKD  
Sbjct: 127 QLLEPEERVILQQNEKPNLKMISTKSWKPLQTLALSMQIQLMDNLIENGLDIDDVDKDNQ 186

Query: 312 TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINL 371
           TALHKAIIGKK+AV ++LLR+ ANP + D DGA  +HYAVQ  +   +K+L  YNVD+N+
Sbjct: 187 TALHKAIIGKKEAVISHLLRKGANPHLQDRDGAAPIHYAVQVGALQTVKLLFKYNVDVNV 246

Query: 372 QDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKL 431
            DN+GWTPLH+AVQ+R  DI K+LL  GADKT + +DG   LDL L  GRD +++ ++KL
Sbjct: 247 ADNEGWTPLHIAVQSRNRDITKILLTNGADKTRRTKDGKLALDLALCFGRDFKSYDLVKL 306

Query: 432 LKQLPT 437
           LK +PT
Sbjct: 307 LKIMPT 312

Involved in the initial differentiation of the proplastid during the embryo development. Also required for correct cotyledon, true leaf and cauline leaf margin development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9Z148|EHMT2_MOUSE Histone-lysine N-methyltransferase EHMT2 OS=Mus musculus GN=Ehmt2 PE=1 SV=2

 Score = 99.4 bits (246), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 5/173 (2%)

Query: 261 VLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIG 320
           +LL+   P+  +    K  PLH+ A  G       LL+   +INAVDK   T L +A++ 
Sbjct: 722 MLLDNLDPNFQSDQQSKRTPLHAAAQKGSVEICHVLLQAGANINAVDKQQRTPLMEAVVN 781

Query: 321 KKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL-LYNVDINLQDNDGWTP 379
               V  Y+++     +  +EDG+T LH+A +  +   + +LL    VD+N QD+ GWTP
Sbjct: 782 NHLEVARYMVQLGGCVYSKEEDGSTCLHHAAKIGNLEMVSLLLSTGQVDVNAQDSGGWTP 841

Query: 380 LHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
           +  A + +  D++++LL +GAD TL + +     ++CL+    T +  + ++L
Sbjct: 842 IIWAAEHKHIDVIRMLLTRGADVTLTDNE----ENICLHWASFTGSAAIAEVL 890

Histone methyltransferase that specifically mono- and dimethylates 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin. H3K9me represents a specific tag for epigenetic transcriptional repression by recruiting HP1 proteins to methylated histones. Also mediates monomethylation of 'Lys-56' of histone H3 (H3K56me1) in G1 phase, leading to promote interaction between histone H3 and PCNA and regulating DNA replication. Also weakly methylates 'Lys-27' of histone H3 (H3K27me). Also required for DNA methylation, the histone methyltransferase activity is not required for DNA methylation, suggesting that these 2 activities function independently. Probably targeted to histone H3 by different DNA-binding proteins like E2F6, MGA, MAX and/or DP1. May also methylate histone H1. In addition to the histone methyltransferase activity, also methylates non-histone proteins: mediates dimethylation of 'Lys-373' of p53/TP53. Also methylates CDYL, WIZ, ACIN1, DNMT1, HDAC1, ERCC6, KLF12 and itself.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q96KQ7|EHMT2_HUMAN Histone-lysine N-methyltransferase EHMT2 OS=Homo sapiens GN=EHMT2 PE=1 SV=3

 Score = 99.0 bits (245), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 5/173 (2%)

Query: 261 VLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIG 320
           +LL+   P+  +    K  PLH+ A  G       LL+   +INAVDK   T L +A++ 
Sbjct: 669 MLLDNLDPNFQSDQQSKRTPLHAAAQKGSVEICHVLLQAGANINAVDKQQRTPLMEAVVN 728

Query: 321 KKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL-LYNVDINLQDNDGWTP 379
               V  Y+++     +  +EDG+T LH+A +  +   + +LL    VD+N QD+ GWTP
Sbjct: 729 NHLEVARYMVQRGGCVYSKEEDGSTCLHHAAKIGNLEMVSLLLSTGQVDVNAQDSGGWTP 788

Query: 380 LHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
           +  A + +  +++++LL +GAD TL + +     ++CL+    T +  + ++L
Sbjct: 789 IIWAAEHKHIEVIRMLLTRGADVTLTDNE----ENICLHWASFTGSAAIAEVL 837

Histone methyltransferase that specifically mono- and dimethylates 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin. H3K9me represents a specific tag for epigenetic transcriptional repression by recruiting HP1 proteins to methylated histones. Also mediates monomethylation of 'Lys-56' of histone H3 (H3K56me1) in G1 phase, leading to promote interaction between histone H3 and PCNA and regulating DNA replication. Also weakly methylates 'Lys-27' of histone H3 (H3K27me). Also required for DNA methylation, the histone methyltransferase activity is not required for DNA methylation, suggesting that these 2 activities function independently. Probably targeted to histone H3 by different DNA-binding proteins like E2F6, MGA, MAX and/or DP1. May also methylate histone H1. In addition to the histone methyltransferase activity, also methylates non-histone proteins: mediates dimethylation of 'Lys-373' of p53/TP53. Also methylates CDYL, WIZ, ACIN1, DNMT1, HDAC1, ERCC6, KLF12 and itself.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9Z2X3|PSD10_RAT 26S proteasome non-ATPase regulatory subunit 10 OS=Rattus norvegicus GN=Psmd10 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 74/138 (53%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           W PLH  A++G    V ALL     +NAV+++G TALH A    +  +   LL   ANP 
Sbjct: 74  WSPLHIAASAGRDEIVKALLIKGAQVNAVNQNGCTALHYAASKNRHEIAVMLLEGGANPD 133

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
             +   AT +H A    +   + ILL Y    N+QD +G TPLHLA    R +  KLL+ 
Sbjct: 134 AKNHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKLLVT 193

Query: 398 KGADKTLKNRDGLTPLDL 415
           +GA   ++N++  TPL +
Sbjct: 194 QGASIYIENKEEKTPLQV 211

Acts as an oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.

Rattus norvegicus (taxid: 10116)

>sp|O75832|PSD10_HUMAN 26S proteasome non-ATPase regulatory subunit 10 OS=Homo sapiens GN=PSMD10 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 73/138 (52%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           W PLH  A++G    V ALL     +NAV+++G T LH A    +  +   LL   ANP 
Sbjct: 74  WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
             D   AT +H A    +   I ILL Y    N+QD +G TPLHLA    R +  KLL+ 
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 193

Query: 398 KGADKTLKNRDGLTPLDL 415
           +GA   ++N++  TPL +
Sbjct: 194 QGASIYIENKEEKTPLQV 211

Acts as an proto-oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.

Homo sapiens (taxid: 9606)

>sp|Q9Z2X2|PSD10_MOUSE 26S proteasome non-ATPase regulatory subunit 10 OS=Mus musculus GN=Psmd10 PE=1 SV=3

 Score = 92.8 bits (229), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 72/138 (52%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           W PLH  A++G    V ALL     +NAV+++G T LH A    +  +   LL   ANP 
Sbjct: 74  WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
             D   AT +H A    +   + ILL Y    N+QD +G TPLHLA    R +  K L+ 
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193

Query: 398 KGADKTLKNRDGLTPLDL 415
           +GA   ++N++  TPL +
Sbjct: 194 QGASIYIENKEEKTPLQV 211

Acts as an oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.

Mus musculus (taxid: 10090)

>sp|F8W2M1|HACE1_DANRE E3 ubiquitin-protein ligase HACE1 OS=Danio rerio GN=hace1 PE=3 SV=2

 Score = 92.4 bits (228), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 79/141 (56%), Gaps = 1/141 (0%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH  A +G+   +  LL++N D+N  + +GLTA+H   +  +  + + L++   N  V 
Sbjct: 105 PLHLAARNGQKKCMGRLLEYNADVNICNNEGLTAIHWLAVNGRTELLHDLVQHVTNVDVE 164

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           D  G T LH A Q      ++ LL    DIN  +  G TPL+ A    + D  ++LL++G
Sbjct: 165 DAMGQTALHVACQNGHKTTVQCLLDSGADINRPNVSGATPLYFACSHGQRDTAQILLLRG 224

Query: 400 ADKTLKNRDGLTPLDLCLYSG 420
           A K L +R+G+TPLDLC+  G
Sbjct: 225 A-KYLPDRNGVTPLDLCVQGG 244

E3 ubiquitin-protein ligase involved in Golgi membrane fusion and regulation of small GTPases. Acts as a regulator of Golgi membrane dynamics during the cell cycle: recruited to Golgi membrane by Rab proteins and regulates postmitotic Golgi membrane fusion. Acts by mediating ubiquitination during mitotic Golgi disassembly, ubiquitination serving as a signal for Golgi reassembly later, after cell division.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 69/126 (54%)

Query: 297 LKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASS 356
           +K+ VDIN  +++GL ALH A       V + LL+  AN     + G T LH A     +
Sbjct: 61  IKNGVDINICNQNGLNALHLASKEGHVEVVSELLQREANVDAATKKGNTALHIASLAGQA 120

Query: 357 PAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLC 416
             +K+L+    ++N Q  +G+TPL++A Q    ++VK LL  GA ++L   DG TPL + 
Sbjct: 121 EVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVA 180

Query: 417 LYSGRD 422
           L  G D
Sbjct: 181 LQQGHD 186

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q8BZ25|ANKK1_MOUSE Ankyrin repeat and protein kinase domain-containing protein 1 OS=Mus musculus GN=Ankk1 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 4/153 (2%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH L A G    V  LL H+VD++     G T L  A   ++  +   LL   A+  + 
Sbjct: 373 PLHFLVAGGSLEQVRLLLSHDVDVDCQTASGYTPLLIATQDQQPDLCALLLAHGADTNLA 432

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           DEDG   LH+A Q       ++LL +   +N ++++GWTPLHLA Q    ++ +LL+ + 
Sbjct: 433 DEDGWAPLHFAAQNGDDHTARLLLDHGALVNAREHEGWTPLHLAAQNNFENVARLLVSRQ 492

Query: 400 ADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
           AD +    +G TPL +  Y G      G++KLL
Sbjct: 493 ADLSPHEAEGKTPLHVAAYFGH----IGLVKLL 521

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
449434110	431	PREDICTED: ankyrin repeat domain-contain	0.835	0.851	0.670	1e-143
255579606	446	aberrant large forked product, putative	0.881	0.867	0.656	1e-143
359496149	439	PREDICTED: ankyrin repeat domain-contain	0.820	0.820	0.662	1e-136
296084066	531	unnamed protein product [Vitis vinifera]	0.820	0.677	0.662	1e-136
30698188	435	ankyrin repeat domain-containing protein	0.929	0.937	0.567	1e-136
26450056	435	unknown protein [Arabidopsis thaliana]	0.929	0.937	0.563	1e-134
356496593	442	PREDICTED: ankyrin repeat domain-contain	0.938	0.932	0.604	1e-133
356540848	444	PREDICTED: ankyrin repeat domain-contain	0.936	0.925	0.595	1e-131
224133564	392	predicted protein [Populus trichocarpa]	0.867	0.971	0.603	1e-129
166744	439	ankyrin repeat-containing protein [Arabi	0.876	0.876	0.570	1e-127

>gi|449434110|ref|XP_004134839.1| PREDICTED: ankyrin repeat domain-containing protein, chloroplastic-like [Cucumis sativus] gi|449491289|ref|XP_004158851.1| PREDICTED: ankyrin repeat domain-containing protein, chloroplastic-like [Cucumis sativus]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/385 (67%), Positives = 316/385 (82%), Gaps = 18/385 (4%)

Query: 54  EPDYLLLQNEDRVIGDCLVFEEGVFEDPYLENDNVPPPRKPR--RSRGKQNVVQVEAENL 111
           +PD L    ED VIGDC++FE+ VF+DPY+ +D+      P   +S+ K  VV++  ENL
Sbjct: 56  QPDEL----EDFVIGDCVIFEDDVFDDPYVSDDSSVDNSIPSTAKSKPKSAVVEINPENL 111

Query: 112 VPDKWKQVQEELNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLSQ 171
           VPD+WK+VQ E+N+TKKE+R+IA ++EFGSRVEKKK+G +PL S++L+EYL+YKEAK++Q
Sbjct: 112 VPDEWKEVQAEINITKKERRKIAQEMEFGSRVEKKKKGLVPLRSVNLEEYLSYKEAKMAQ 171

Query: 172 LNPPLVLDKPSTFPTDAKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDV 231
           L P LVLD P++FP     +EE    G +D ++ SS    +RV PKNPKWAVYGRGL+DV
Sbjct: 172 LKP-LVLDNPTSFPA----TEEVN--GAEDAMSRSS----ERVAPKNPKWAVYGRGLEDV 220

Query: 232 SEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFY 291
           SEFFNSG Y P D+KS+GPR KLF+KEEK +LNK++P LA+A S  WLPLH+L  SGEFY
Sbjct: 221 SEFFNSGQYQPADRKSEGPR-KLFSKEEKAMLNKRVPDLASARSDMWLPLHTLVGSGEFY 279

Query: 292 FVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAV 351
            VD LLK+NVDIN VDK G TALH+AI+ KKQA+TNYLLRESANPFV D+DGATL+HYAV
Sbjct: 280 LVDELLKNNVDINGVDKVGFTALHRAIVAKKQAITNYLLRESANPFVRDKDGATLMHYAV 339

Query: 352 QTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLT 411
           QTASS AIK LLLYNVDINLQD DGWTPLHLAVQARRTD+V+LLLIKGADKTLKN +GLT
Sbjct: 340 QTASSQAIKTLLLYNVDINLQDKDGWTPLHLAVQARRTDVVRLLLIKGADKTLKNAEGLT 399

Query: 412 PLDLCLYSGRDTRTFGMIKLLKQLP 436
           PLD+CLYSG+DT+T+ +IKLLKQLP
Sbjct: 400 PLDICLYSGQDTKTYELIKLLKQLP 424

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579606|ref|XP_002530644.1| aberrant large forked product, putative [Ricinus communis] gi|223529817|gb|EEF31752.1| aberrant large forked product, putative [Ricinus communis]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 268/408 (65%), Positives = 331/408 (81%), Gaps = 21/408 (5%)

Query: 44  KLYSLSPLQQEPDYLLLQNED-------RVIGDCLVFEEGVFEDPYLEN------DNVPP 90
           K YS+SP  Q      +QN+D        VIGDCLVFEEG FE PYLEN      D    
Sbjct: 41  KFYSVSPSLQSS--FPIQNDDYDSAVEEHVIGDCLVFEEGAFEGPYLENASSSVLDQESD 98

Query: 91  PRKPRRSRGKQN---VVQVEAENLVPDKWKQVQEELNLTKKEKRQIALQIEFGSRVEKKK 147
           P++  +++ K+    V+++EAENLVPDKW++VQ E+N+TKKE+R+IA ++EF SRVEKKK
Sbjct: 99  PKQKTKNKNKKKKKNVIEIEAENLVPDKWREVQAEINITKKERRKIAQELEFNSRVEKKK 158

Query: 148 QGYLPLNSLDLKEYLAYKEAKLSQLNPPLVLDKPSTFPTDAKESEEDRDCGFQDFVNSSS 207
           +G  P+ +L+L+EY AY+EAKL+QL P LVLD PS+F  + ++  E+ +   ++ V  S 
Sbjct: 159 KGLRPIRALNLEEYKAYREAKLAQLKP-LVLDNPSSFQVEKEDENEEEEEKEKEKVEMSE 217

Query: 208 STCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKL 267
           S C++RV PKNP+WAVYG+G DDV+EFFNSG+Y+P  K S+G RRKLFT+EEK+LLN+K+
Sbjct: 218 S-CSERVAPKNPRWAVYGKGFDDVNEFFNSGHYEPGVKNSEG-RRKLFTQEEKLLLNRKI 275

Query: 268 PHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTN 327
           P +A ATS KWLPLHSLAASGEFY VDALLKHNVDINA++ DGLTALHKAI+ KKQA+T 
Sbjct: 276 PDVAAATSGKWLPLHSLAASGEFYLVDALLKHNVDINALNVDGLTALHKAILCKKQAITG 335

Query: 328 YLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQAR 387
           YLLRESANPFV+D DGA+LLHYAVQTAS+PAIK+LLLYNVDINLQDNDGWTPLH+AVQAR
Sbjct: 336 YLLRESANPFVLDSDGASLLHYAVQTASAPAIKLLLLYNVDINLQDNDGWTPLHVAVQAR 395

Query: 388 RTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435
           R+DI+KLLLIKGAD+ LKN+DGLTPLDLCLYSGRDT+TF +IKLLKQ 
Sbjct: 396 RSDIIKLLLIKGADQMLKNQDGLTPLDLCLYSGRDTKTFELIKLLKQF 443

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496149|ref|XP_002270437.2| PREDICTED: ankyrin repeat domain-containing protein, chloroplastic isoform 1 [Vitis vinifera]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 247/373 (66%), Positives = 305/373 (81%), Gaps = 13/373 (3%)

Query: 67  IGDCLVFEEGVFEDPYLENDNVPPPRKPRRSRGKQNVVQVEAENLVPDKWKQVQEELNLT 126
           IGDCLVFEEGVFEDPYL+++     + P+ ++     +++E ENLVP+KWK+VQE++N+T
Sbjct: 73  IGDCLVFEEGVFEDPYLQDNFDFNAQNPKHNKPN---LEIEPENLVPEKWKEVQEQINIT 129

Query: 127 KKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLSQLNPPLVLDKPSTFPT 186
           KKE+R+IA Q+E+GSRVEK+KQG +P++  D   Y +Y+E KL+QL P LVLDKP++FP 
Sbjct: 130 KKERRKIAQQLEYGSRVEKRKQGLVPISQED---YSSYRETKLAQLKP-LVLDKPTSFPV 185

Query: 187 DAKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKK 246
             + +E     G      + +   + RV P+NP+ AVYG  L+D+SEFFNSG Y P    
Sbjct: 186 KEEAAEAAPVEG------NPNEPTSSRVVPRNPRRAVYGGTLEDISEFFNSGTYQPGGNA 239

Query: 247 SDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAV 306
           +    RKLFTKEEK+LLNK++P LA ATS KWLPLH+LAASGEFY +DALLKHNVDINAV
Sbjct: 240 ATQGPRKLFTKEEKLLLNKRIPDLAAATSGKWLPLHTLAASGEFYLMDALLKHNVDINAV 299

Query: 307 DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYN 366
           DKDGLTALHKAIIGKKQA+TNYLLRESANP+V D++GATL+HYAVQTASS AIKILLLYN
Sbjct: 300 DKDGLTALHKAIIGKKQAITNYLLRESANPYVRDKEGATLMHYAVQTASSHAIKILLLYN 359

Query: 367 VDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTF 426
           VDINLQDNDGWTPLHLAVQ RRTD+V+LLLIKGAD+TLKN+DGL+PL+LCLYSG+DTRT+
Sbjct: 360 VDINLQDNDGWTPLHLAVQTRRTDLVRLLLIKGADRTLKNQDGLSPLELCLYSGQDTRTY 419

Query: 427 GMIKLLKQLPTSK 439
            +IKLLKQLP  +
Sbjct: 420 ELIKLLKQLPQQR 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084066|emb|CBI24454.3| unnamed protein product [Vitis vinifera]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 247/373 (66%), Positives = 305/373 (81%), Gaps = 13/373 (3%)

Query: 67  IGDCLVFEEGVFEDPYLENDNVPPPRKPRRSRGKQNVVQVEAENLVPDKWKQVQEELNLT 126
           IGDCLVFEEGVFEDPYL+++     + P+ ++     +++E ENLVP+KWK+VQE++N+T
Sbjct: 165 IGDCLVFEEGVFEDPYLQDNFDFNAQNPKHNKPN---LEIEPENLVPEKWKEVQEQINIT 221

Query: 127 KKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLSQLNPPLVLDKPSTFPT 186
           KKE+R+IA Q+E+GSRVEK+KQG +P++  D   Y +Y+E KL+QL P LVLDKP++FP 
Sbjct: 222 KKERRKIAQQLEYGSRVEKRKQGLVPISQED---YSSYRETKLAQLKP-LVLDKPTSFPV 277

Query: 187 DAKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKK 246
             + +E     G      + +   + RV P+NP+ AVYG  L+D+SEFFNSG Y P    
Sbjct: 278 KEEAAEAAPVEG------NPNEPTSSRVVPRNPRRAVYGGTLEDISEFFNSGTYQPGGNA 331

Query: 247 SDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAV 306
           +    RKLFTKEEK+LLNK++P LA ATS KWLPLH+LAASGEFY +DALLKHNVDINAV
Sbjct: 332 ATQGPRKLFTKEEKLLLNKRIPDLAAATSGKWLPLHTLAASGEFYLMDALLKHNVDINAV 391

Query: 307 DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYN 366
           DKDGLTALHKAIIGKKQA+TNYLLRESANP+V D++GATL+HYAVQTASS AIKILLLYN
Sbjct: 392 DKDGLTALHKAIIGKKQAITNYLLRESANPYVRDKEGATLMHYAVQTASSHAIKILLLYN 451

Query: 367 VDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTF 426
           VDINLQDNDGWTPLHLAVQ RRTD+V+LLLIKGAD+TLKN+DGL+PL+LCLYSG+DTRT+
Sbjct: 452 VDINLQDNDGWTPLHLAVQTRRTDLVRLLLIKGADRTLKNQDGLSPLELCLYSGQDTRTY 511

Query: 427 GMIKLLKQLPTSK 439
            +IKLLKQLP  +
Sbjct: 512 ELIKLLKQLPQQR 524

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30698188|ref|NP_569027.2| ankyrin repeat domain-containing protein [Arabidopsis thaliana] gi|27151762|sp|Q05753.2|AKRP_ARATH RecName: Full=Ankyrin repeat domain-containing protein, chloroplastic; Short=AKRP; AltName: Full=Protein EMBRYO DEFECTIVE 2036; Flags: Precursor gi|15450523|gb|AAK96554.1| At5g66060/K2A8_13 [Arabidopsis thaliana] gi|24111371|gb|AAN46809.1| At5g66060/K2A8_13 [Arabidopsis thaliana] gi|222422842|dbj|BAH19408.1| AT5G66055 [Arabidopsis thaliana] gi|332010768|gb|AED98151.1| ankyrin repeat domain-containing protein [Arabidopsis thaliana]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/444 (56%), Positives = 327/444 (73%), Gaps = 36/444 (8%)

Query: 1   MSLLNPKISSPFPFPHSLHSPPQSKFHKLFPSQPLNLPTAATTKLYSLSPLQQEPDYLLL 60
           +SLL P+ +SP     SLHS         FP++  +L  ++ T +         PD    
Sbjct: 10  ISLLLPR-TSPSRLSPSLHSLA-------FPTRLRSLSYSSQTSIL--------PD---- 49

Query: 61  QNEDRVIGDCLVFEEGVFEDPYLENDNVPPPRKPRRS--RG---KQNVVQVEAENLVPDK 115
             +D ++GDCLV+E+GVFEDPYL+ +     ++ R+   RG   + +  ++E ENLVP++
Sbjct: 50  AGDDFIVGDCLVYEDGVFEDPYLDKEVTQVAKQERKKNRRGGAKRLDESEIEPENLVPEE 109

Query: 116 WKQVQEELNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLSQLNPP 175
           W+ +Q E+NLTKK+KR+IA ++EFG RVEKK+QG +PL  +DL ++L YKEAKL+QL P 
Sbjct: 110 WRDIQAEVNLTKKDKRKIAQEMEFGVRVEKKRQGLIPLRKVDLNDFLTYKEAKLAQLRP- 168

Query: 176 LVLDKPSTFPTDAKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFF 235
           ++LDKP  F  D+  S +           ++ S+ ++RV PKNP+WAVYG+G D V++FF
Sbjct: 169 VILDKPGNFSDDSGASSDG---------ETAVSSPSERVAPKNPRWAVYGKGFDHVAKFF 219

Query: 236 NSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDA 295
           NS  YDP DKKSDGPR KL +KEEK +LN + P LA ATSKKWLPLH+LAA GEFY VD+
Sbjct: 220 NSDKYDPSDKKSDGPR-KLLSKEEKFMLNSRNPDLAVATSKKWLPLHTLAACGEFYLVDS 278

Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355
           LLKHN+DINA D  GLT LH+AIIGKKQA+TNYLLRESANPFV+D++GATL+HYAVQTAS
Sbjct: 279 LLKHNLDINATDVGGLTVLHRAIIGKKQAITNYLLRESANPFVLDDEGATLMHYAVQTAS 338

Query: 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
           +P IK+LLLYN DIN QD DGWTPLH+AVQARR+DIVKLLLIKGAD  +KN+DGLTPL L
Sbjct: 339 APTIKLLLLYNADINAQDRDGWTPLHVAVQARRSDIVKLLLIKGADIEVKNKDGLTPLGL 398

Query: 416 CLYSGRDTRTFGMIKLLKQLPTSK 439
           CLY GR+ RT+ ++KLLK+ P S+
Sbjct: 399 CLYLGREIRTYEVMKLLKEFPLSR 422

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26450056|dbj|BAC42148.1| unknown protein [Arabidopsis thaliana]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 250/444 (56%), Positives = 325/444 (73%), Gaps = 36/444 (8%)

Query: 1   MSLLNPKISSPFPFPHSLHSPPQSKFHKLFPSQPLNLPTAATTKLYSLSPLQQEPDYLLL 60
           +SLL P+ +SP     SLHS         FP++  +L  ++ T +         PD    
Sbjct: 10  ISLLLPR-TSPSRLSPSLHSLA-------FPTRLRSLSYSSQTSIL--------PD---- 49

Query: 61  QNEDRVIGDCLVFEEGVFEDPYLENDNVPPPRKPRRS--RG---KQNVVQVEAENLVPDK 115
             +D ++GDCLV+E+GVFEDPYL+ +     ++ R+   RG   + +  ++E EN VP++
Sbjct: 50  AGDDFIVGDCLVYEDGVFEDPYLDKEVTQVAKQERKKNRRGGAKRLDESEIEPENPVPEE 109

Query: 116 WKQVQEELNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLSQLNPP 175
           W+ +Q E+NLTKK+KR+IA ++EFG RVEKK+QG + L  +DL ++L YKEAKL+QL P 
Sbjct: 110 WRDIQAEVNLTKKDKRKIAQEMEFGVRVEKKRQGLIQLRKVDLNDFLTYKEAKLAQLRP- 168

Query: 176 LVLDKPSTFPTDAKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFF 235
           ++LDKP  F  D+  S +           ++ S+ ++RV PKNP+WAVYG+G D V++FF
Sbjct: 169 VILDKPGNFSDDSGASSDG---------ETAVSSPSERVAPKNPRWAVYGKGFDHVAKFF 219

Query: 236 NSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDA 295
           NS  YDP DKKSDGPR KL +KEEK +LN + P LA ATSKKWLPLH+LAA GEFY VD+
Sbjct: 220 NSDKYDPSDKKSDGPR-KLLSKEEKFMLNSRNPDLAVATSKKWLPLHTLAACGEFYLVDS 278

Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355
           LLKHN+DINA D  GLT LH+AIIGKKQA+TNYLLRESANPFV+D++GATL+HYAVQTAS
Sbjct: 279 LLKHNLDINATDVGGLTVLHRAIIGKKQAITNYLLRESANPFVLDDEGATLMHYAVQTAS 338

Query: 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
           +P IK+LLLYN DIN QD DGWTPLH+AVQARR+DIVKLLLIKGAD  +KN+DGLTPL L
Sbjct: 339 APTIKLLLLYNADINAQDRDGWTPLHVAVQARRSDIVKLLLIKGADIEVKNKDGLTPLGL 398

Query: 416 CLYSGRDTRTFGMIKLLKQLPTSK 439
           CLY GR+ RT+ ++KLLK+ P S+
Sbjct: 399 CLYLGREIRTYEVMKLLKEFPLSR 422

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496593|ref|XP_003517151.1| PREDICTED: ankyrin repeat domain-containing protein, chloroplastic-like [Glycine max]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/432 (60%), Positives = 316/432 (73%), Gaps = 20/432 (4%)

Query: 13  PFPHSLHSP-PQSKFHKLFPSQPLNLPTAATTKLYSLSP-LQQEPDYLLLQNEDRVIGDC 70
           P PH+   P P      L  SQ L  P      L S+SP L   P Y    +ED VIGDC
Sbjct: 11  PQPHTFLFPLPFFTSRNLQLSQTLQFPR--NWNLRSISPSLHPTPQYD--DSEDHVIGDC 66

Query: 71  LVFEEGVFEDPYLEN-----DNVP---PPRKPRRSRGKQNVVQVEAENLVPDKWKQVQEE 122
           +VFE+GVF++P   N     DN+    P  KPR S  K+ V +   ENLVPDKW++VQ E
Sbjct: 67  VVFEDGVFDEPLFHNHHHNPDNLTVDKPKPKPRPSWRKK-VEETLGENLVPDKWREVQAE 125

Query: 123 LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLSQLNPPLVLDKPS 182
           +N+TK+E R+IA ++EF S+VEKK++G +PL  ++L +Y AYKEAKL+Q+    +LD  S
Sbjct: 126 INITKREMRKIAREVEFNSKVEKKRRGLIPLRDMNLDDYKAYKEAKLAQMK---LLDYSS 182

Query: 183 TFPTDAKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDP 242
           +FP D    E   + G + F   +     +RV PKNP+WAVYGRGL+DV+EFFNS NYDP
Sbjct: 183 SFPVDENVPEPQLNRG-EKFEAEAELDGGERVAPKNPRWAVYGRGLEDVTEFFNSDNYDP 241

Query: 243 PDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVD 302
              K+ G RRKLF KEEKVLLNK++P LA ATS KWLPLH+LAA GEF+ +D+LLKHNVD
Sbjct: 242 T-AKTPGGRRKLFNKEEKVLLNKRIPDLAAATSDKWLPLHTLAACGEFHLLDSLLKHNVD 300

Query: 303 INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKIL 362
           INAVDKDGLTALH+A IGKKQA+ NYLLR SANPFV D +GATL+HYAV TAS+  IKIL
Sbjct: 301 INAVDKDGLTALHRATIGKKQAIINYLLRNSANPFVQDNEGATLMHYAVLTASTQTIKIL 360

Query: 363 LLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
           LLYNVDINLQDN GWTPLHLAVQA+RTD+V+LLLIKGADKTLKN DGLTPLDLCLY+G+ 
Sbjct: 361 LLYNVDINLQDNYGWTPLHLAVQAQRTDLVRLLLIKGADKTLKNEDGLTPLDLCLYNGQS 420

Query: 423 TRTFGMIKLLKQ 434
            RT+ +IKL KQ
Sbjct: 421 ARTYELIKLFKQ 432

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540848|ref|XP_003538896.1| PREDICTED: ankyrin repeat domain-containing protein, chloroplastic-like [Glycine max]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/435 (59%), Positives = 321/435 (73%), Gaps = 24/435 (5%)

Query: 13  PFPHSLHSP-PQSKFHKLFPSQPLNLPTAATTKLYSLSP-LQQEPDYLLLQNEDRVIGDC 70
           P PH+   P P S    L  SQ L+ P      L SLSP L    D     ++D VIGDC
Sbjct: 11  PQPHNFLFPLPVSTSRNLPLSQTLHFPR--NWNLRSLSPSLHLTYD----DSDDHVIGDC 64

Query: 71  LVFEEGVFEDP-----YLENDNVP---PPRKPRRSRGKQNVVQVEAENLVPDKWKQVQEE 122
           +VFE+GVF++P     +L +DN+    P  KP RS  K+ V +   ENLVPDKW++VQ E
Sbjct: 65  VVFEDGVFDEPVFHNHHLNSDNLAVDKPKPKPGRSWRKK-VEETLGENLVPDKWREVQAE 123

Query: 123 LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLSQLNPPLVLDKPS 182
           +N+TK+E R+IA ++EF S+VEKK++G +PL  ++L +Y AYKEAKL+Q+    +LD  S
Sbjct: 124 INITKREMRKIAREVEFNSKVEKKRRGLIPLRDMNLDDYKAYKEAKLAQMK---LLDYAS 180

Query: 183 TFPT--DAKESEEDRDCGFQDFVNSSSS-TCTQRVPPKNPKWAVYGRGLDDVSEFFNSGN 239
             P   +  E+E + + G ++   +       +RV PKNP+WAVYGRGL+DV+EFFNS N
Sbjct: 181 CSPVGQNVPEAEPEFNRGGEEVAEAEPELNAGERVEPKNPRWAVYGRGLEDVTEFFNSDN 240

Query: 240 YDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKH 299
           YDP   K+ G RRKLF KEEKVLLNK++P LA ATS KWLPLH+LAA GEFY +D+LLKH
Sbjct: 241 YDPT-AKTLGGRRKLFNKEEKVLLNKRIPDLAAATSDKWLPLHTLAACGEFYLLDSLLKH 299

Query: 300 NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAI 359
           NVDINAVD+DGLTALH+AIIGKKQA+TNYLLR SANPFV D +GATL+HYAV TAS+  +
Sbjct: 300 NVDINAVDRDGLTALHRAIIGKKQAITNYLLRNSANPFVQDNEGATLMHYAVLTASTQTV 359

Query: 360 KILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYS 419
           KILLLYNVDINL DN GWTPLHLAVQA+RTD+V+LLLIKGADKTLKN DGLTPLDLCLY+
Sbjct: 360 KILLLYNVDINLPDNYGWTPLHLAVQAQRTDLVRLLLIKGADKTLKNEDGLTPLDLCLYN 419

Query: 420 GRDTRTFGMIKLLKQ 434
           G+  RT+ +IKL KQ
Sbjct: 420 GQCARTYELIKLFKQ 434

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133564|ref|XP_002327626.1| predicted protein [Populus trichocarpa] gi|222836711|gb|EEE75104.1| predicted protein [Populus trichocarpa]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/398 (60%), Positives = 309/398 (77%), Gaps = 17/398 (4%)

Query: 44  KLYSLSPLQQEPDYLL---LQNEDRVIGDCLVFEEGVFEDPYLENDN--VPPPRKPRRSR 98
           K++S SP  Q    +     +++D  IG CL+FEEG+FEDPYLE ++  +  P+     +
Sbjct: 6   KIHSFSPSLQSQFAIQNYDFEDQDHAIGGCLLFEEGIFEDPYLETNSNAIEDPKLKTFKK 65

Query: 99  GKQNVV-QVEAENLVPDKWKQVQEELNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLD 157
            ++ VV  +EAENLVP+KW+  Q E+N+ KKE+R+IA ++E+  + E+KK+G +P+ S++
Sbjct: 66  KQKRVVPTIEAENLVPEKWRDAQAEINIGKKERRKIAQEMEYNKKFERKKKGLVPIRSVN 125

Query: 158 LKEYLAYKEAKLSQLNPPLVLDKPSTFPTDAKESEEDRDCGFQDFVNSSSSTCTQRVPPK 217
           L+EY A+KEAKL+QL P LVL  P +F  + K  E++ +              ++RV  K
Sbjct: 126 LEEYQAFKEAKLAQLKP-LVLGNPESFKEEEKMKEDEVEV---------KEIVSERVKGK 175

Query: 218 NPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKK 277
           +P+WAVYGRGLDDV EF NS +Y+P + KS+G +RKLFTKEEKVLLNK++P LA A S K
Sbjct: 176 HPRWAVYGRGLDDVREFLNSEDYEPGEHKSEG-KRKLFTKEEKVLLNKRVPDLAVANSSK 234

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           WLPLH+LAASGEF+ +DALLKHNVDINA D +G TALH+AI+ KKQA+T+YLLRESA+PF
Sbjct: 235 WLPLHTLAASGEFHLMDALLKHNVDINAADVNGWTALHRAIVCKKQAITSYLLRESADPF 294

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
           V D +GATL+HYAVQTAS+PAIK+LLLYNVDINLQDNDGWTPLHLAVQ +RTDIVKLLLI
Sbjct: 295 VRDAEGATLMHYAVQTASAPAIKLLLLYNVDINLQDNDGWTPLHLAVQTQRTDIVKLLLI 354

Query: 398 KGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435
           K AD+TLKN+DG TPLDLCLYSGRDTRT+ +IKLLKQ 
Sbjct: 355 KRADRTLKNKDGSTPLDLCLYSGRDTRTYELIKLLKQF 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166744|gb|AAA32812.1| ankyrin repeat-containing protein [Arabidopsis thaliana]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/421 (57%), Positives = 307/421 (72%), Gaps = 36/421 (8%)

Query: 1   MSLLNPKISSPFPFPHSLHSPPQSKFHKLFPSQPLNLPTAATTKLYSLSPLQQEPDYLLL 60
           +SLL P  +SP     SLHS        +FP++  +L  ++ T +         PD    
Sbjct: 39  ISLLLPG-TSPSRLSPSLHS-------LVFPTRLRSLSYSSQTSIL--------PD---- 78

Query: 61  QNEDRVIGDCLVFEEGVFEDPYLENDNVPPPRKPRRS--RG---KQNVVQVEAENLVPDK 115
             +D ++GDCLV+E+GVFEDPYLE +     ++ R+   RG   + +  ++E ENLVP++
Sbjct: 79  AGDDFIVGDCLVYEDGVFEDPYLEKEVTQVAKQERKKNRRGGAKRLDESEIEPENLVPEE 138

Query: 116 WKQVQEELNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLSQLNPP 175
           W+ +Q E+NLTKK+KR+IA ++EFG RVEKK+QG +PL  +DL ++L YKEAKL+QL P 
Sbjct: 139 WRDIQAEVNLTKKDKRKIAQEMEFGVRVEKKRQGLIPLRKVDLNDFLTYKEAKLAQLRP- 197

Query: 176 LVLDKPSTFPTDAKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFF 235
           ++LDKP  F  D   S +           ++ S+ ++RV PKNP+WAVYG+G D V++FF
Sbjct: 198 VILDKPGNFSDDFGASSDG---------ETAVSSPSERVAPKNPRWAVYGKGFDHVAKFF 248

Query: 236 NSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDA 295
           NS  YDP DKKSDGPR KL +KEEK +LN + P LA ATSKKWLPLH+LAA GEFY VD+
Sbjct: 249 NSDKYDPSDKKSDGPR-KLLSKEEKFMLNSRNPDLAVATSKKWLPLHTLAACGEFYLVDS 307

Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355
           LLKHN+DINA D  GLTALH+AIIGKKQA+TNYLLRESANPFV+D++GATL+HYAVQTAS
Sbjct: 308 LLKHNLDINATDVGGLTALHRAIIGKKQAITNYLLRESANPFVLDDEGATLMHYAVQTAS 367

Query: 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
           +P IK+LLLYN DIN QD DGWTPLH+AVQARR+DIVKLLLIKGAD  +KN+DGLTPL  
Sbjct: 368 APTIKLLLLYNADINAQDRDGWTPLHVAVQARRSDIVKLLLIKGADIEVKNKDGLTPLGF 427

Query: 416 C 416
            
Sbjct: 428 A 428

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
TAIR|locus:505006718	435	AKRP "ankyrin repeat protein"	0.883	0.891	0.602	9.9e-126
TAIR|locus:2173767	315	EMB506 "embryo defective 506"	0.466	0.650	0.478	2.6e-47
UNIPROTKB|F1P1R3	189	PSMD10 "Uncharacterized protei	0.309	0.719	0.411	3.1e-21
RGD|620350	231	Psmd10 "proteasome (prosome, m	0.314	0.597	0.376	1.2e-19
UNIPROTKB|O75832	226	PSMD10 "26S proteasome non-ATP	0.314	0.610	0.384	1.5e-19
UNIPROTKB|E2RA22	226	PSMD10 "Uncharacterized protei	0.314	0.610	0.384	1.5e-19
MGI|MGI:1858898	231	Psmd10 "proteasome (prosome, m	0.314	0.597	0.369	3.4e-19
ZFIN|ZDB-GENE-050112-1	226	psmd10 "proteasome (prosome, m	0.314	0.610	0.340	3.4e-17
MGI|MGI:3045301	745	Ankk1 "ankyrin repeat and kina	0.339	0.2	0.346	5.3e-16
DICTYBASE|DDB_G0289189	232	psmD10 "26S proteasome non-ATP	0.312	0.590	0.340	5.6e-16

TAIR|locus:505006718 AKRP "ankyrin repeat protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
 Identities = 244/405 (60%), Positives = 306/405 (75%)

Query:    40 AATTKLYSLSPLQQEPDYLLLQNEDRVIGDCLVFEEGVFEDPYLEND--NVXXXXXXXXX 97
             A  T+L SLS    +   L    +D ++GDCLV+E+GVFEDPYL+ +   V         
Sbjct:    30 AFPTRLRSLS-YSSQTSILPDAGDDFIVGDCLVYEDGVFEDPYLDKEVTQVAKQERKKNR 88

Query:    98 XG---KQNVVQVEAENLVPDKWKQVQEELNLTKKEKRQIALQIEFGSRVEKKKQGYLPLN 154
              G   + +  ++E ENLVP++W+ +Q E+NLTKK+KR+IA ++EFG RVEKK+QG +PL 
Sbjct:    89 RGGAKRLDESEIEPENLVPEEWRDIQAEVNLTKKDKRKIAQEMEFGVRVEKKRQGLIPLR 148

Query:   155 SLDLKEYLAYKEAKLSQLNPPLVLDKPSTFPTDAKESEEDRDCGFQDFVNSSSSTCTQRV 214
              +DL ++L YKEAKL+QL P ++LDKP  F  D+  S +         V+S S    +RV
Sbjct:   149 KVDLNDFLTYKEAKLAQLRP-VILDKPGNFSDDSGASSDGETA-----VSSPS----ERV 198

Query:   215 PPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATAT 274
              PKNP+WAVYG+G D V++FFNS  YDP DKKSDGPR KL +KEEK +LN + P LA AT
Sbjct:   199 APKNPRWAVYGKGFDHVAKFFNSDKYDPSDKKSDGPR-KLLSKEEKFMLNSRNPDLAVAT 257

Query:   275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
             SKKWLPLH+LAA GEFY VD+LLKHN+DINA D  GLT LH+AIIGKKQA+TNYLLRESA
Sbjct:   258 SKKWLPLHTLAACGEFYLVDSLLKHNLDINATDVGGLTVLHRAIIGKKQAITNYLLRESA 317

Query:   335 NPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
             NPFV+D++GATL+HYAVQTAS+P IK+LLLYN DIN QD DGWTPLH+AVQARR+DIVKL
Sbjct:   318 NPFVLDDEGATLMHYAVQTASAPTIKLLLLYNADINAQDRDGWTPLHVAVQARRSDIVKL 377

Query:   395 LLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTSK 439
             LLIKGAD  +KN+DGLTPL LCLY GR+ RT+ ++KLLK+ P S+
Sbjct:   378 LLIKGADIEVKNKDGLTPLGLCLYLGREIRTYEVMKLLKEFPLSR 422

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS;IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2173767 EMB506 "embryo defective 506" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 102/213 (47%), Positives = 143/213 (67%)

Query:   229 DD--VSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLL--NKKLPHLATATSKKWLPLHSL 284
             DD  V +   + NY+    K      +L   EE+V+L  N+K P+L   ++K W PL +L
Sbjct:   104 DDSRVQKLTTTDNYEEELAKEV---EQLLEPEERVILQQNEK-PNLKMISTKSWKPLQTL 159

Query:   285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
             A S +   +D L+++ +DI+ VDKD  TALHKAIIGKK+AV ++LLR+ ANP + D DGA
Sbjct:   160 ALSMQIQLMDNLIENGLDIDDVDKDNQTALHKAIIGKKEAVISHLLRKGANPHLQDRDGA 219

Query:   345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
               +HYAVQ  +   +K+L  YNVD+N+ DN+GWTPLH+AVQ+R  DI K+LL  GADKT 
Sbjct:   220 APIHYAVQVGALQTVKLLFKYNVDVNVADNEGWTPLHIAVQSRNRDITKILLTNGADKTR 279

Query:   405 KNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT 437
             + +DG   LDL L  GRD +++ ++KLLK +PT
Sbjct:   280 RTKDGKLALDLALCFGRDFKSYDLVKLLKIMPT 312

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010027 "thylakoid membrane organization" evidence=RCA

UNIPROTKB|F1P1R3 PSMD10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 252 (93.8 bits), Expect = 3.1e-21, P = 3.1e-21
 Identities = 56/136 (41%), Positives = 76/136 (55%)

Query:   278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
             W PLH  A++G    V AL+     INAV+++G T LH A    KQ +   LL   A+P 
Sbjct:    37 WTPLHIAASAGRDEIVKALIDKGAPINAVNQNGCTPLHYAASKNKQEIAIMLLENGADPD 96

Query:   338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
               D   +T LH A    +   I+ILL +N  +N+QD++G TPLHLA    R D  KLL+ 
Sbjct:    97 ATDHFESTPLHRAAAKGNLKMIQILLRHNASVNIQDSEGNTPLHLACDEERVDEAKLLVS 156

Query:   398 KGADKTLKNRDGLTPL 413
              GA    +N++ LTPL
Sbjct:   157 HGASIHTENKEELTPL 172

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

RGD|620350 Psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Rattus norvegicus (taxid:10116)]

 Score = 238 (88.8 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 52/138 (37%), Positives = 74/138 (53%)

Query:   278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
             W PLH  A++G    V ALL     +NAV+++G TALH A    +  +   LL   ANP 
Sbjct:    74 WSPLHIAASAGRDEIVKALLIKGAQVNAVNQNGCTALHYAASKNRHEIAVMLLEGGANPD 133

Query:   338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
               +   AT +H A    +   + ILL Y    N+QD +G TPLHLA    R +  KLL+ 
Sbjct:   134 AKNHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKLLVT 193

Query:   398 KGADKTLKNRDGLTPLDL 415
             +GA   ++N++  TPL +
Sbjct:   194 QGASIYIENKEEKTPLQV 211

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=ISO;ISS

GO:0008134 "transcription factor binding" evidence=ISO

GO:0015629 "actin cytoskeleton" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO;ISS

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO;ISS

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO;ISS

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;ISS

GO:0043409 "negative regulation of MAPK cascade" evidence=ISO;ISS

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO;ISS

GO:0045111 "intermediate filament cytoskeleton" evidence=ISO

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=ISO;ISS

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO;ISS

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO;ISS

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=ISO

UNIPROTKB|O75832 PSMD10 "26S proteasome non-ATPase regulatory subunit 10" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 53/138 (38%), Positives = 73/138 (52%)

Query:   278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
             W PLH  A++G    V ALL     +NAV+++G T LH A    +  +   LL   ANP 
Sbjct:    74 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133

Query:   338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
               D   AT +H A    +   I ILL Y    N+QD +G TPLHLA    R +  KLL+ 
Sbjct:   134 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 193

Query:   398 KGADKTLKNRDGLTPLDL 415
             +GA   ++N++  TPL +
Sbjct:   194 QGASIYIENKEEKTPLQV 211

GO:0005515 "protein binding" evidence=IPI

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0070682 "proteasome regulatory particle assembly" evidence=IMP

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IDA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IMP

GO:0043409 "negative regulation of MAPK cascade" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IDA;IMP

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IMP

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IDA

GO:0000502 "proteasome complex" evidence=TAS

GO:0005838 "proteasome regulatory particle" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

UNIPROTKB|E2RA22 PSMD10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 237 (88.5 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 53/138 (38%), Positives = 73/138 (52%)

Query:   278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
             W PLH  A++G    V ALL     +NAV+++G T LH A    +  +   LL   ANP 
Sbjct:    74 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133

Query:   338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
               D   AT +H A    +   I ILL Y    N+QD +G TPLHLA    R +  KLL+ 
Sbjct:   134 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 193

Query:   398 KGADKTLKNRDGLTPLDL 415
             +GA   ++N++  TPL +
Sbjct:   194 QGASIYIENKEEKTPLQV 211

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

MGI|MGI:1858898 Psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Mus musculus (taxid:10090)]

 Score = 234 (87.4 bits), Expect = 3.4e-19, P = 3.4e-19
 Identities = 51/138 (36%), Positives = 72/138 (52%)

Query:   278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
             W PLH  A++G    V ALL     +NAV+++G T LH A    +  +   LL   ANP 
Sbjct:    74 WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133

Query:   338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
               D   AT +H A    +   + ILL Y    N+QD +G TPLHLA    R +  K L+ 
Sbjct:   134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193

Query:   398 KGADKTLKNRDGLTPLDL 415
             +GA   ++N++  TPL +
Sbjct:   194 QGASIYIENKEEKTPLQV 211

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043409 "negative regulation of MAPK cascade" evidence=ISO

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=ISO

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO

ZFIN|ZDB-GENE-050112-1 psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Danio rerio (taxid:7955)]

 Score = 216 (81.1 bits), Expect = 3.4e-17, P = 3.4e-17
 Identities = 47/138 (34%), Positives = 75/138 (54%)

Query:   278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
             W PLH  A++G    V +L+     +N+V+++G T LH A       +   LL   A+P 
Sbjct:    74 WTPLHIAASAGREEIVRSLISKGAQLNSVNQNGCTPLHYAASKNLYEIAQILLENGADPN 133

Query:   338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
               D+  +T LH A    +   I++LL  +   N+QD++G TPLHLA    R +  KLL+ 
Sbjct:   134 ATDKLQSTPLHRASAKGNYRLIQLLLKESASTNIQDSEGNTPLHLACDEERAEAAKLLVE 193

Query:   398 KGADKTLKNRDGLTPLDL 415
              GA   ++N++ +TPL +
Sbjct:   194 HGASIYIENKEKMTPLQV 211

GO:0000502 "proteasome complex" evidence=IEA

GO:0055088 "lipid homeostasis" evidence=IMP

MGI|MGI:3045301 Ankk1 "ankyrin repeat and kinase domain containing 1" [Mus musculus (taxid:10090)]

 Score = 229 (85.7 bits), Expect = 5.3e-16, P = 5.3e-16
 Identities = 53/153 (34%), Positives = 80/153 (52%)

Query:   280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
             PLH L A G    V  LL H+VD++     G T L  A   ++  +   LL   A+  + 
Sbjct:   373 PLHFLVAGGSLEQVRLLLSHDVDVDCQTASGYTPLLIATQDQQPDLCALLLAHGADTNLA 432

Query:   340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
             DEDG   LH+A Q       ++LL +   +N ++++GWTPLHLA Q    ++ +LL+ + 
Sbjct:   433 DEDGWAPLHFAAQNGDDHTARLLLDHGALVNAREHEGWTPLHLAAQNNFENVARLLVSRQ 492

Query:   400 ADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
             AD +    +G TPL +  Y G      G++KLL
Sbjct:   493 ADLSPHEAEGKTPLHVAAYFGH----IGLVKLL 521

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

DICTYBASE|DDB_G0289189 psmD10 "26S proteasome non-ATPase regulatory subunit 10" [Dictyostelium discoideum (taxid:44689)]

 Score = 205 (77.2 bits), Expect = 5.6e-16, P = 5.6e-16
 Identities = 47/138 (34%), Positives = 72/138 (52%)

Query:   278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
             W PL S  ++G  + V  LL+   D N V+    T LH A    +  + + LL   A   
Sbjct:    81 WTPLTSATSAGHTHMVKLLLEFGADPNTVNDSKRTPLHYASSKGRSDIVDLLLTHGAKNR 140

Query:   338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
               D+ G+  +H A    S   ++ LL    +IN  +N+G TPLH+A +    D+V+ LL 
Sbjct:   141 K-DDTGSAPIHRASSNGSVATVERLLKGEANINSTNNEGDTPLHIAAEYNHEDVVECLLK 199

Query:   398 KGADKTLKNRDGLTPLDL 415
              GAD T++N+D  TP+D+
Sbjct:   200 HGADTTIENKDSKTPIDM 217

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05753	AKRP_ARATH	No assigned EC number	0.5675	0.9293	0.9379	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	439
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-37
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-34
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-21
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-16
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-15
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-15
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-14
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-13
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-12
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-12
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	6e-12
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-11
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-11
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-11
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-09
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-09
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-08
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	8e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	8e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-05
smart00248	30	smart00248, ANK, ankyrin repeats	1e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-05
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	2e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-04
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	3e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-04
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	4e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.001
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	0.002
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	0.002
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  131 bits (332), Expect = 3e-37
 Identities = 53/129 (41%), Positives = 68/129 (52%), Gaps = 4/129 (3%)

Query: 304 NAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL 363
           NA D+DG T LH A       V   LL   A+    D DG T LH A +      +K+LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 364 LYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDT 423
               D+N +D DG TPLHLA +    D+VKLLL  GAD   +++DG TPL L   +G   
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120

Query: 424 RTFGMIKLL 432
               ++KLL
Sbjct: 121 ----VVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  125 bits (315), Expect = 1e-34
 Identities = 47/117 (40%), Positives = 66/117 (56%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH  A++G    V  LL++  D+NA D DG T LH A       +   LL + A+    
Sbjct: 10  PLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
           D+DG T LH A +  +   +K+LL +  D+N +D DG TPLHLA +    ++VKLLL
Sbjct: 70  DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 86.9 bits (216), Expect = 4e-21
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 314 LHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD 373
           LH A       +   LL + A+  + D D A  LH A +  +   +K+LL +  D+N +D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTA--LHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 374 NDGWTPLHLAVQARRTDIVKLLLIKGADKTLKN 406
            DG T LHLA +    +IVKLLL  GAD  LK+
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 26/150 (17%)

Query: 293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVT--NYLLRESANPFVVDEDGATLLHYA 350
           V  LL++  ++NA D +G+T L  AI  K  + +   YLL   AN  + + DG  LLH  
Sbjct: 89  VKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLY 148

Query: 351 VQTASSPAIK---------------------ILLLYNVDINLQDNDGWTPLHLAVQARRT 389
           +    S  I                       LL Y V IN++D  G+TPLH AV     
Sbjct: 149 L---ESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNP 205

Query: 390 DIVKLLLIKGADKTLKNRDGLTPLDLCLYS 419
           + VK LL  GA+  L N+ G TPL + + +
Sbjct: 206 EFVKYLLDLGANPNLVNKYGDTPLHIAILN 235

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.8 bits (182), Expect = 2e-16
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 347 LHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKN 406
           LH A +  +   +K+LL    D+NL D D  T LHLA +    +IVKLLL  GAD   K+
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 407 RDGLTPLDLCLYSGRDTRTFGMIKLL 432
           +DG T L L   +G       ++KLL
Sbjct: 59  KDGNTALHLAARNGN----LEIVKLL 80

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 76.0 bits (186), Expect = 1e-15
 Identities = 61/177 (34%), Positives = 72/177 (40%), Gaps = 11/177 (6%)

Query: 250 PRRKLFTKEEKVLLNKKLPHLATATSKKWLPLH-SLAASGEFYFVDALLKHNVDI--NAV 306
              K F     V L   L    +  S K L L+  LA        + LLK  VD    A 
Sbjct: 10  LINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAAR 69

Query: 307 DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSP-----AIKI 361
           D DG   LH A       +   LL   A+    D DG T LH A    + P       K+
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKL 129

Query: 362 LLLYNV---DINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
           LL         NL+D DG TPLH A      DIV+LLL  GAD   +N  G+T LD 
Sbjct: 130 LLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 78.4 bits (193), Expect = 1e-15
 Identities = 50/139 (35%), Positives = 69/139 (49%), Gaps = 3/139 (2%)

Query: 289 EFYFVDALLKHNVDINAVDKDGL-TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLL 347
           E      LL +  DIN  D+    TALH A   K Q +T  LL   AN  + D+   + L
Sbjct: 146 EAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPL 205

Query: 348 HYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAV-QARRTDIVKLLLIKGADKTLKN 406
           H+AV+  + P + ILL      + +D  G TPLH++V   +  DI+KLLL  G D   K+
Sbjct: 206 HHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS 265

Query: 407 R-DGLTPLDLCLYSGRDTR 424
              GLT L   + S R  +
Sbjct: 266 YILGLTALHSSIKSERKLK 284

Length = 477

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 72.5 bits (177), Expect = 1e-14
 Identities = 54/157 (34%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 258 EEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKA 317
            E +L      HLA       LPLHS A+ G+   V  LL    D+NA D DG T LH A
Sbjct: 54  SELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLA 113

Query: 318 IIGKKQ-----AVTNYLLRESA---NPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDI 369
            +          V   LL   A      + DEDG T LH+A     +  +++LL    D 
Sbjct: 114 ALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADP 173

Query: 370 NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKN 406
           N +++ G T L  A +  R ++VKLLL KG   +L  
Sbjct: 174 NSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLK 210

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
           LH  A +G    V  LL+   D+N  D D  TALH A       +   LL   A+    D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQD 373
           +DG T LH A +  +   +K+LL +  DINL+D
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 70.4 bits (172), Expect = 4e-13
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAV-DKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
            LH     G+   V+ LL      + V  KDG+T LH A I KK  +   L+   A+P +
Sbjct: 71  ELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI 130

Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
            + D  + LH AV       I++L+ +   ++++D  G TPL +A+      I K+LL  
Sbjct: 131 PNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS 190

Query: 399 GADKTLKNRDG 409
           GA+     ++G
Sbjct: 191 GANIDYFGKNG 201

Length = 413

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 9/144 (6%)

Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355
           ++  +   +   K  +  L+ A   +   V   LL   A+     ++ +T LHY      
Sbjct: 21  IIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKY 80

Query: 356 S-----PAIKILLLYNVDINLQDNDGWTPLHLAVQARRTD--IVKLLLIKGADKTLKNRD 408
           +       +K+LL Y  ++N  DN+G TPL  A+  +     IV+ LL  GA+  +KN D
Sbjct: 81  NLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSD 140

Query: 409 GLTPLDLCLYSGRDTRTFGMIKLL 432
           G   L L L S +      ++KLL
Sbjct: 141 GENLLHLYLESNKI--DLKILKLL 162

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 52/177 (29%), Positives = 74/177 (41%), Gaps = 28/177 (15%)

Query: 280 PLHSLAA--SGEFYFVDALLKHNVDINAVDKDGLTALH-------------KAIIGKKQA 324
           PL    +  S  +  V+ LL +  ++N  + DG   LH             K +I K   
Sbjct: 109 PLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD 168

Query: 325 VT-----NYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTP 379
           +      NYLL       + D  G T LHYAV   +   +K LL    + NL +  G TP
Sbjct: 169 INAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTP 228

Query: 380 LHLAVQARRTDIVKLLLIKGAD-KTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435
           LH+A+     +I KLLL  G   KT+          L  +  +D  T   IK+LK+ 
Sbjct: 229 LHIAILNNNKEIFKLLLNNGPSIKTIIET-------LLYFKDKDLNTITKIKMLKKS 278

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 10/129 (7%)

Query: 293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQA---VTNYLLRESANPFVVDEDGATLLHY 349
           +  LL+   D+NA+D  G+T L   ++  + A   +   L+   A+ + VD+   +LLH+
Sbjct: 135 IRLLLRKGADVNALDLYGMTPLA-VLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHH 193

Query: 350 AVQTA-SSPAI-KILLLYNVDINLQDNDGWTPLHLAV---QARRTDIVKLLLIKGADKTL 404
            +Q+      I + L+    D    D  G TPLH        +R+ ++  LLI G     
Sbjct: 194 HLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLP-LLIAGISINA 252

Query: 405 KNRDGLTPL 413
           +NR G TPL
Sbjct: 253 RNRYGQTPL 261

Length = 471

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 67.6 bits (165), Expect = 6e-12
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 9/160 (5%)

Query: 259 EKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
           E++L  K  P +  +  +   PLH  A+ G    V  LLKH  +++  D +G TAL  AI
Sbjct: 542 EELLKAKLDPDIGDSKGRT--PLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI 599

Query: 319 IGKKQAVTN--YLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDG 376
             K   +    Y     ++P         LL  A +     A+K LL   ++++ +D+ G
Sbjct: 600 SAKHHKIFRILYHFASISDPHA----AGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQG 655

Query: 377 WTPLHLAVQARRTDIVKLLLIKGADKTLKN-RDGLTPLDL 415
            T L +A+     D+V+LL++ GAD    N  D  +P +L
Sbjct: 656 ATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTEL 695

Length = 823

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 293 VDALLKHNVDINAVDKDGLTALH--KAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYA 350
           +  L+    D+ AVD    + LH        +  +   L+R   +P   D  G T LH  
Sbjct: 170 LRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSM 229

Query: 351 VQTASSPAIKI--LLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRD 408
              +S     +  LL+  + IN ++  G TPLH A         + L+  GAD    + D
Sbjct: 230 ATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSD 289

Query: 409 GLTPLDL 415
           G TPL L
Sbjct: 290 GNTPLSL 296

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 361 ILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
           +L    +D+N  D +G TPLHLA +    ++V+ LL  G D  L++ DGLT LDL
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 4/136 (2%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            LH    + +    + LL +  ++N  DK   + LH A+    + + + LL   A+    
Sbjct: 171 ALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDAR 230

Query: 340 DEDGATLLHYAVQTASSPAI-KILLLYNVDINLQDN-DGWTPLHLAVQARRTDIVKLLLI 397
           D+ G T LH +V       I K+LL + VD+N +    G T LH ++  +    +KLLL 
Sbjct: 231 DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI--KSERKLKLLLE 288

Query: 398 KGADKTLKNRDGLTPL 413
            GAD    N   LTPL
Sbjct: 289 YGADINSLNSYKLTPL 304

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 293 VDALLKHNVDINAVDKDGLTALHKAII-GKKQAVTNYLLRESANPFVVDEDGATLLH-Y- 349
           V  LL+   D+NA ++ G T LH  +       V   L++  A+    D+ G T LH Y 
Sbjct: 66  VRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYL 125

Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDI--VKLLLIKGADKTLKNR 407
           +    +   I++LL    D+N  D  G TPL + +++R  ++  ++LL+  GAD    + 
Sbjct: 126 SGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDD 185

Query: 408 DGLTPLD 414
              + L 
Sbjct: 186 RFRSLLH 192

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 11/149 (7%)

Query: 293 VDALLKHNVDINAVDKDGLTALH---KAIIGKKQAVTNYLLRESANPFVVDEDGATLLHY 349
           V  LL    D+N   + G T LH        K + +   LL   A+    +  G T LH 
Sbjct: 30  VRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHL 89

Query: 350 AVQTASS-PAIKILLLYNVDINLQDNDGWTPLH--LAVQARRTDIVKLLLIKGADKTLKN 406
            +  A++   IK+L+    D+N +D  G TPLH  L+       +++LLL KGAD    +
Sbjct: 90  YLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALD 149

Query: 407 RDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435
             G+TPL + L S         ++LL+ L
Sbjct: 150 LYGMTPLAVLLKSRNAN-----VELLRLL 173

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 65.4 bits (159), Expect = 2e-11
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 23/157 (14%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PL     SG+   V+  +KH  DIN ++      L  AI      +   L+    +  ++
Sbjct: 38  PLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSIL 97

Query: 340 -----------------------DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDG 376
                                  D +  T LHYA++     +IK+L  Y  D+N++D++G
Sbjct: 98  PIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNG 157

Query: 377 WTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
             P+H+A++    DI+KLLL KGA   +K+ +G +PL
Sbjct: 158 CYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPL 194

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 4/146 (2%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           P+H       F  +  LL+     N  D +G + LH A      A    L+    +    
Sbjct: 160 PIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK 219

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQAR-RTDIVKLLLIK 398
            ++G T LH A+    S AI+ LL+ N  IN QD DG TPLH A+      DI+ +LL  
Sbjct: 220 CKNGFTPLHNAIIHNRS-AIE-LLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYH 277

Query: 399 GADKTLKNRDGLTPLDLCL-YSGRDT 423
            AD ++K+  G  P+D    Y  +D 
Sbjct: 278 KADISIKDNKGENPIDTAFKYINKDP 303

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 57.2 bits (139), Expect = 6e-11
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
           T LH A  +     +K LL   VDIN  D DG T LH+A +    +++KLLL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 56.6 bits (137), Expect = 9e-11
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLA 383
           L     +    D +G T LH A +  +   ++ LL   VD+NL+D+DG T L LA
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 14/145 (9%)

Query: 295 ALLKHNVDINAVDKDGLTALHKAIIGKKQA---VTNYLLRESANPFVVDEDGATLLHYAV 351
                +VDI         AL+  ++            LL   A+     E G T LH  +
Sbjct: 1   DEEDESVDIIMEA-----ALYDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYL 55

Query: 352 QTASSP---AIKILLLYNVDINLQDNDGWTPLHLAVQARRT-DIVKLLLIKGADKTLKNR 407
             +S      +++LL    D+N  +  G+TPLHL +    T D++KLL+  GAD   K++
Sbjct: 56  HYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDK 115

Query: 408 DGLTPLDLCLYSGRDTRTFGMIKLL 432
            G TPL + L SG +     +I+LL
Sbjct: 116 VGRTPLHVYL-SGFNIN-PKVIRLL 138

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 24/65 (36%), Positives = 30/65 (46%)

Query: 276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
                LH  A +G    V  LL+H  D+NA DKDG TALH A       +   LL   A+
Sbjct: 27  DTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Query: 336 PFVVD 340
             + D
Sbjct: 87  INLKD 91

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 61.5 bits (149), Expect = 3e-10
 Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
           LH     G+   +  L ++  D+N  D +G   +H AI      +   LL + A   V D
Sbjct: 128 LHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD 187

Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
            +G + LH A +      IK+L+ +   I  +  +G+TPLH A+   R+ I   LLI  A
Sbjct: 188 NNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIE--LLINNA 245

Query: 401 DKTLKNRDGLTPL 413
               ++ DG TPL
Sbjct: 246 SINDQDIDGSTPL 258

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 61.5 bits (149), Expect = 3e-10
 Identities = 36/121 (29%), Positives = 58/121 (47%)

Query: 293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQ 352
           +  +L   +D+N  D +  T LH AI          L    A+  + D++G   +H A++
Sbjct: 107 IKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIK 166

Query: 353 TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTP 412
                 IK+LL      N++DN+G +PLH A +      +KLL+  G     K ++G TP
Sbjct: 167 HNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTP 226

Query: 413 L 413
           L
Sbjct: 227 L 227

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 58.5 bits (141), Expect = 3e-09
 Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 5/146 (3%)

Query: 288 GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLL 347
           GE      LL   ++ N    DG++ +  A+  +       L++  A P V   D  + L
Sbjct: 13  GELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESEL 72

Query: 348 HYAVQTASSPAIKILLLYNVDIN-LQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKN 406
           H AV+     A++ LL      + +   DG TPLHLA   ++ DI+KLL+ +GAD  + N
Sbjct: 73  HDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPN 132

Query: 407 RDGLTPLDLCLYSGRDTRTFGMIKLL 432
            D  +PL L +  G        I+LL
Sbjct: 133 TDKFSPLHLAVMMG----DIKGIELL 154

Length = 413

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 332 ESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDI 391
           E  +P V       L   A  +  +   +ILL    D N +D DG TPLH+A       +
Sbjct: 72  EVIDPVVAHMLTVELCQLAA-SGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQV 130

Query: 392 VKLLLIKGADKTLKNRDGLTPLDLCLYSGR 421
           V++LL  GAD TL ++DG TPL+L   +G 
Sbjct: 131 VRVLLEFGADPTLLDKDGKTPLELAEENGF 160

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 49.9 bits (120), Expect = 1e-08
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 375 DGWTPLHLAVQARRTDIVKLLLIKGADKTLKNR 407
           DG TPLHLA +    ++VKLLL  GAD   +++
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 260 KVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAII 319
           K+LL K    +         PLH  A +G    V  LLKH  D+NA DKDG T LH A  
Sbjct: 57  KLLLEKG-ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAK 115

Query: 320 GKKQAVTNYLL 330
                V   LL
Sbjct: 116 NGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 48/165 (29%), Positives = 68/165 (41%), Gaps = 30/165 (18%)

Query: 289 EFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLH 348
           E    + LL+   D+NA D   +T +H A       + N LL   A+  ++  D  ++L 
Sbjct: 157 ELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLE 216

Query: 349 YAVQTASSPAIKI---------------------------LLLYNVDINLQDNDGW--TP 379
            AV + +   IK                            LLLY+   ++   D    TP
Sbjct: 217 CAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTP 276

Query: 380 LHLAVQARR-TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDT 423
           LH A QA   + +V  LL +GAD   KN  G TPL L   +G DT
Sbjct: 277 LHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDT 321

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 296 LLKHNVDINAVDKDGLTALHKAII-GKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTA 354
           L+KH    +    D  + LH A+  G  +AV   L        V  +DG T LH A    
Sbjct: 54  LMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILK 113

Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
               +K+L+    D ++ + D ++PLHLAV       ++LL+   A   +++  G TPL
Sbjct: 114 KLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPL 172

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 23/53 (43%), Positives = 25/53 (47%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLL 330
              LH  A SG    V  LL+  VDIN  D+DG TALH A       V   LL
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 296 LLKH-NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYA 350
           LL+H  +D+NA D +G T LH A       +  +LL+   +  + D DG T L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 376 GWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
           G T LH A  + R ++VK LL KG D    + DG T L +   +G       ++KLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGN----LEVLKLL 53

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 26/68 (38%), Positives = 35/68 (51%)

Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
           LL   A+P   D DG T LH A        +++LL +  D  L D DG TPL LA +   
Sbjct: 101 LLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF 160

Query: 389 TDIVKLLL 396
            ++V+LL 
Sbjct: 161 REVVQLLS 168

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 45.3 bits (108), Expect = 8e-07
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query: 310 GLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL 363
           G TALHKA I  +  +  YLL +  +    DEDG T LH A +  +   +K+LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 354 ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
           AS   + + L+ +  +  +D DG  PLH A       IVKLLL  GAD   K+ DG TPL
Sbjct: 51  ASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPL 110

Query: 414 DLCLYSGRDTRTFG-MIKLL 432
            L   +G        + KLL
Sbjct: 111 HLAALNGNPPEGNIEVAKLL 130

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 47.6 bits (113), Expect = 8e-06
 Identities = 40/183 (21%), Positives = 72/183 (39%), Gaps = 32/183 (17%)

Query: 263 LNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKA----- 317
           ++    +  +A+   ++PLH    +     V +LL    ++N  D   LT LH       
Sbjct: 23  IDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPN 82

Query: 318 IIGKKQAVTNYLLRESANPFVVDEDG----------ATLLHY--AVQTA----------- 354
            +G K+ + +          V  +D             L +    +QT            
Sbjct: 83  KLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKD 142

Query: 355 ---SSPAIKILLLYNVDINLQD-NDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGL 410
               +   K+LL Y  DIN++D + G T LH A + +   + +LLL  GA+  + ++   
Sbjct: 143 DIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNN 202

Query: 411 TPL 413
           +PL
Sbjct: 203 SPL 205

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 47.8 bits (113), Expect = 8e-06
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%)

Query: 280 PLHSLAASGEFY-FVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
           PLH  +        V  LL+   ++NA D    T +H A +     + N LL   A+   
Sbjct: 344 PLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEA 403

Query: 339 VDEDGATLLHYAV-QTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQAR-RTDIVKLLL 396
           + +   T LH+A+  T    ++K L+    ++N ++ D  TPLH A +   + D++++LL
Sbjct: 404 LSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLL 463

Query: 397 IKGADKTLKNRDGLTPLDLCL 417
             GAD    N     PL + L
Sbjct: 464 DNGADVNAINIQNQYPLLIAL 484

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 6/156 (3%)

Query: 280 PLHSLAASG-EFYFVDALLKHNVDINAVDKDGLTALHKA-IIGKKQAVTNYLLRESANPF 337
           PL+ +A +G +   +  L+    D+NA D+  +T LH+A  + + + +   LL   AN  
Sbjct: 310 PLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVN 369

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDI-VKLLL 396
             D    T +HYA    +   I  LL Y  DI        T LH A+      + VK L+
Sbjct: 370 ARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLI 429

Query: 397 IKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
            +GA+   KN+D  TPL    Y+ +      +I++L
Sbjct: 430 DRGANVNSKNKDLSTPLH---YACKKNCKLDVIEML 462

Length = 682

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 16/27 (59%), Positives = 19/27 (70%)

Query: 375 DGWTPLHLAVQARRTDIVKLLLIKGAD 401
           DG TPLHLA +    ++VKLLL  GAD
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 375 DGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           DG TPLHLA +    ++VKLLL KGAD   
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 280 PLHSLAA--SGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           PLHS+A   S +   V  LL   + INA ++ G T LH A +         L+   A+  
Sbjct: 225 PLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADIN 284

Query: 338 VVDEDGATLLHYAV 351
            V  DG T L   V
Sbjct: 285 AVSSDGNTPLSLMV 298

Length = 471

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 13/116 (11%)

Query: 296 LLKHNVDINAVDKDGLTA----LHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAV 351
           L+++  DIN  + DG T     L    I   + +  +++   A+  ++D+DG T+L   +
Sbjct: 95  LIENGADINKKNSDGETPLYCLLSNGYINNLEILL-FMIENGADTTLLDKDGFTMLQVYL 153

Query: 352 QTASS---PAIKILLLYNVDINLQDN-DGWTPLHLAVQAR----RTDIVKLLLIKG 399
           Q+        IK+LL   VDIN  +N + +  LH   +        DI+KL +  G
Sbjct: 154 QSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNG 209

Length = 489

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 44.7 bits (105), Expect = 7e-05
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVT-NYLLRESANPFV 338
           P+H  A       ++ LL +  DI A+ +   TALH A+ G    ++   L+   AN   
Sbjct: 378 PIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS 437

Query: 339 VDEDGATLLHYAVQTASSP-AIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
            ++D +T LHYA +       I++LL    D+N  +     PL +A++     IV +LL 
Sbjct: 438 KNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH--GIVNILLH 495

Query: 398 KGAD 401
            GA+
Sbjct: 496 YGAE 499

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 313 ALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQ 372
           AL  AI+  +  +   LL    NP     DG + +  A++   S AIK+L+ +    +++
Sbjct: 5   ALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVK 64

Query: 373 DNDGWTPLHLAVQARRTDIVKLLLIKG--ADKTLKNRDGLTPLDL 415
             D  + LH AV+      V+ LL  G  AD     +DG+TPL L
Sbjct: 65  YPDIESELHDAVEEGDVKAVEELLDLGKFADDVFY-KDGMTPLHL 108

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 23/56 (41%), Positives = 24/56 (42%)

Query: 262 LLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKA 317
           LL      L         PLH  A  G    V  LLK  VD+N  D DGLTAL  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 359 IKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLY 418
           I I L Y  DIN+ D  G T LH AV+  +  +V LLL  G+D  +++ +G T + + + 
Sbjct: 435 INICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAIN 494

Query: 419 SGRDTRTFGMIKLLKQLPT 437
             R+     M  LL   PT
Sbjct: 495 ESRNIELLKM--LLCHKPT 511

Length = 661

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 342 DGATLLHYAVQTASSPAIKILLLYNVDINLQDN 374
           DG T LH A +      +K+LL    D+N +D 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 328 YLLRESANPFVVDEDGATLLHYAVQT----ASSPAIKILLLYNVDINLQDN-DGWTPLHL 382
             L         D+ G   +H A +      ++  I  L+    DIN Q+  +G T LHL
Sbjct: 51  AALN------ATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHL 104

Query: 383 AVQARRTDIVKLLLIK-GADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435
           A   R  D+ + L  + G D    N D  +P +L +    D     M+++L+++
Sbjct: 105 AAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAI----DNEDVAMMQILREI 154

Length = 169

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 8/148 (5%)

Query: 231 VSEFFNSGNY--DPPDKKSDGPRRKLFTKEEKV----LLNKKLPHLATATSKKWLPLHSL 284
           V E  + G +  D   K    P   L T  +K+    LL  +        + K+ PLH  
Sbjct: 84  VEELLDLGKFADDVFYKDGMTPLH-LATILKKLDIMKLLIARGADPDIPNTDKFSPLHLA 142

Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDG- 343
              G+   ++ L+ H   ++  D  G T L  A+     A+   LL   AN     ++G 
Sbjct: 143 VMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGC 202

Query: 344 ATLLHYAVQTASSPAIKILLLYNVDINL 371
              L YA++      +++ +    D N+
Sbjct: 203 VAALCYAIENNKIDIVRLFIKRGADCNI 230

Length = 413

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 20/60 (33%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAV-QARRTDIVKLLL 396
           ++D+ G TLLH AV+      + +LL    D+N++ N+G+T + +A+ ++R  +++K+LL
Sbjct: 447 MIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLL 506

Length = 661

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 33/122 (27%), Positives = 42/122 (34%), Gaps = 23/122 (18%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            L   A   E   +  LL +     AV   G T LH   +    AV   LL   A     
Sbjct: 55  ALFVAAIENENLELTELLLNLSCRGAV---GDTLLHAISLEYVDAVEAILLHLLAAF--- 108

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
            + G   L     T+          +   I        T LHLA   +  +IVKLLL +G
Sbjct: 109 RKSGPLELANDQYTSE---------FTPGI--------TALHLAAHRQNYEIVKLLLERG 151

Query: 400 AD 401
           A 
Sbjct: 152 AS 153

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 5/98 (5%)

Query: 325 VTNYLLRESANP---FVVDEDG-ATLLHYAVQTASSPAIKILLLYNVDINLQDNDG-WTP 379
           + + +L+  A+P   F + E+     L YA+   +  A K+L+ Y  D+N    +   TP
Sbjct: 48  IIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP 107

Query: 380 LHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCL 417
           L+++V       +++LL  GAD  ++  D +TP++L L
Sbjct: 108 LYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELAL 145

Length = 300

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 296 LLKHNVDINAVDKDGLTALHKAI--IGKKQAVTNYLLRESANPFVVDEDGATLLH-YAVQ 352
           L+     I   D+DG   LH  +     +  V   L+    +    D D   +L+ Y + 
Sbjct: 109 LIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILF 168

Query: 353 TASSPAIKILLLYNVDINLQDNDGWTPLHL 382
            +       L    +DIN  +  G+    L
Sbjct: 169 HSDKKIFDFLTSLGIDINETNKSGYNCYDL 198

Length = 209

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 16/90 (17%)

Query: 340 DEDGATLLH-YAVQT-ASSPAIKILLLYNVDINLQDNDGWTPLH-----LAV-------- 384
           D  G T LH Y ++   S+  IK+L  Y  D+N  DN G T LH     L+V        
Sbjct: 314 DSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPET 373

Query: 385 -QARRTDIVKLLLIKGADKTLKNRDGLTPL 413
               R D+++ L+  GAD T  N  G TPL
Sbjct: 374 DNDIRLDVIQCLISLGADITAVNCLGYTPL 403

Length = 764

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	439
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	99.98
PHA02876	682	ankyrin repeat protein; Provisional	99.97
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
PHA02792	631	ankyrin-like protein; Provisional	99.91
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.87
PHA02741	169	hypothetical protein; Provisional	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PHA02741	169	hypothetical protein; Provisional	99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.86
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.82
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.77
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.75
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.74
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.68
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.64
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.61
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.59
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.54
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.49
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.47
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.46
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.45
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.4
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.39
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.39
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.38
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.33
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.84
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.8
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.8
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.78
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.78
PF13606	30	Ank_3: Ankyrin repeat	98.71
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.71
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.68
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.67
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.63
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.6
cd00411	323	Asparaginase Asparaginase (amidohydrolase): Aspara	98.58
TIGR00519	336	asnASE_I L-asparaginases, type I. Two related fami	98.55
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.54
KOG0522	560	consensus Ankyrin repeat protein [General function	98.53
PF13606	30	Ank_3: Ankyrin repeat	98.52
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.48
PRK04183	419	glutamyl-tRNA(Gln) amidotransferase subunit D; Val	98.47
TIGR02153	404	gatD_arch glutamyl-tRNA(Gln) amidotransferase, sub	98.45
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.43
KOG0522	560	consensus Ankyrin repeat protein [General function	98.4
smart00870	323	Asparaginase Asparaginase, which is found in vario	98.39
PRK09461	335	ansA cytoplasmic asparaginase I; Provisional	98.37
KOG0511	516	consensus Ankyrin repeat protein [General function	98.36
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.27
KOG2384	223	consensus Major histocompatibility complex protein	98.17
KOG0511	516	consensus Ankyrin repeat protein [General function	98.12
KOG2384	223	consensus Major histocompatibility complex protein	98.11
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.08
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.07
PF00710	313	Asparaginase: Asparaginase; InterPro: IPR006034 As	98.03
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.98
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.94
PRK11096	347	ansB L-asparaginase II; Provisional	97.89
TIGR00520	349	asnASE_II L-asparaginases, type II. Two related fa	97.84
COG0252	351	AnsB L-asparaginase/archaeal Glu-tRNAGln amidotran	97.81
KOG0503	368	consensus Asparaginase [Amino acid transport and m	97.55
KOG2505	591	consensus Ankyrin repeat protein [General function	97.2
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.81
KOG2505	591	consensus Ankyrin repeat protein [General function	96.31
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.28
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.32
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.94
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	90.73
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	90.71
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.12
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	87.62

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.3e-34  Score=279.45  Aligned_cols=223  Identities=14%  Similarity=0.123  Sum_probs=198.8

Q ss_pred             cchHHHhhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCc
Q 013643          197 CGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHL  270 (439)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~  270 (439)
                      .++.+|+.+... ...+..|+||||+|+..|+.+++++|++.|++++..   .|.||||      ..+++++|+..|+++
T Consensus        12 ~~~~~~Lis~~a-~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~---d~~TpLh~Aa~~g~~eiV~lLL~~Gadv   87 (284)
T PHA02791         12 KQLKSFLSSKDA-FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGMDD   87 (284)
T ss_pred             HHHHHHHHhCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC---CCCCHHHHHHHCCCHHHHHHHHHCCCCC
Confidence            345566666443 356778999999999999999999999999998865   3689999      778999999999999


Q ss_pred             ccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCC-hHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCCHHH
Q 013643          271 ATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGL-TALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLH  348 (439)
Q Consensus       271 ~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~-t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d-~~g~TpLh  348 (439)
                      +..+..|+||||+|+..|+.+++++|+++|++++..+..|+ ||||+|+..|+.++|++|++++.+.  .+ ..|.||||
T Consensus        88 n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh  165 (284)
T PHA02791         88 SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIH  165 (284)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHH
Confidence            99999999999999999999999999999999999988885 8999999999999999999987653  23 35899999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCccCCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHH
Q 013643          349 YAVQTASSPAIKILLLYNVDINLQDNDGWTP-LHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFG  427 (439)
Q Consensus       349 ~A~~~g~~~iV~~Ll~~gadin~~d~~G~Tp-Lh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~e  427 (439)
                      +|+.+|+.++|++|+++|+++|.++..|.|| ||+|+..|+.++|++|+++|||++.+|..| ++|      |+    .|
T Consensus       166 ~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~----~e  234 (284)
T PHA02791        166 ITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DD----AE  234 (284)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CC----HH
Confidence            9999999999999999999999999999987 999999999999999999999999999854 666      55    48


Q ss_pred             HHHHHhcCC
Q 013643          428 MIKLLKQLP  436 (439)
Q Consensus       428 iik~L~~~~  436 (439)
                      |+|+|++..
T Consensus       235 ~~~~ll~~~  243 (284)
T PHA02791        235 IAKMIIEKH  243 (284)
T ss_pred             HHHHHHHhh
Confidence            999998854

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.6e-34  Score=299.13  Aligned_cols=233  Identities=24%  Similarity=0.288  Sum_probs=217.2

Q ss_pred             HHhhcCCCCCCCCCCCCcHHHH-----HHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC--------hHHHHHHHhhcC
Q 013643          201 DFVNSSSSTCTQRVPPKNPKWA-----VYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF--------TKEEKVLLNKKL  267 (439)
Q Consensus       201 ~~l~~~~~~~~~~~~g~t~l~~-----A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~--------~~~~~~lL~~~~  267 (439)
                      .++..+......+..+.+|+|.     |+..++.+++++|++.|++++..+ ..|.|||+        ..+++++|++.|
T Consensus        53 ~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d-~~g~tpL~~A~~~~~~~~~iv~~Ll~~g  131 (480)
T PHA03100         53 ILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPD-NNGITPLLYAISKKSNSYSIVEYLLDNG  131 (480)
T ss_pred             HHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCC-CCCCchhhHHHhcccChHHHHHHHHHcC
Confidence            3344444445556778899999     999999999999999999999888 89999999        345899999999


Q ss_pred             CCcccCCCCCchHHHHHHHcC--CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCC--
Q 013643          268 PHLATATSKKWLPLHSLAASG--EFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDG--  343 (439)
Q Consensus       268 ~d~~~~d~~g~tpLh~Aa~~g--~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g--  343 (439)
                      ++++..+..|+||||+|+..|  +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|  
T Consensus       132 ~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  211 (480)
T PHA03100        132 ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLL  211 (480)
T ss_pred             CCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCc
Confidence            999999999999999999999  9999999999999999999999999999999999999999999999999998888  


Q ss_pred             ----CCHHHHHHHcCC--HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 013643          344 ----ATLLHYAVQTAS--SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCL  417 (439)
Q Consensus       344 ----~TpLh~A~~~g~--~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~  417 (439)
                          .||||+|+..|+  .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||+++|+
T Consensus       212 ~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~  291 (480)
T PHA03100        212 FTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAI  291 (480)
T ss_pred             HHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence                899999999999  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcchHHHHHHHHhcCCCC
Q 013643          418 YSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       418 ~~g~~~~~~eiik~L~~~~~~  438 (439)
                      ..++.    +++++|++.+.+
T Consensus       292 ~~~~~----~iv~~Ll~~g~~  308 (480)
T PHA03100        292 LNNNK----EIFKLLLNNGPS  308 (480)
T ss_pred             HhCCH----HHHHHHHhcCCC
Confidence            99995    999999987653

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.5e-34  Score=291.09  Aligned_cols=218  Identities=22%  Similarity=0.222  Sum_probs=196.7

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCC
Q 013643          216 PKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAASGE  289 (439)
Q Consensus       216 g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~  289 (439)
                      .+++|+.|+..|+.+++++|++.|++++... ..|.||||      ..+++++|++.|++++..+..+.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEI-YDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence            4678999999999999999999999999887 78999998      7788999999999998888889999999999999


Q ss_pred             HHHHHHHHhCCCCCc-ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Q 013643          290 FYFVDALLKHNVDIN-AVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD  368 (439)
Q Consensus       290 ~eivk~LL~~gadin-~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gad  368 (439)
                      .+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~  160 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC  160 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            999999999998764 4466789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643          369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGL-TPLDLCLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       369 in~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~-TpL~~A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                      ++.+|..|+||||+|+..|+.+++++|+++|++++..+..|. ||+++|+..|+.    +++++|++.+.+
T Consensus       161 ~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad  227 (413)
T PHA02875        161 LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGAD  227 (413)
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcC
Confidence            999999999999999999999999999999999999887774 788889999995    899999887653

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-33  Score=292.87  Aligned_cols=231  Identities=22%  Similarity=0.234  Sum_probs=210.3

Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHhcC-cHHHHHHHHhCCCCCCCCCCCCCCCcCC--------hHHHHHHHhhcCCCccc
Q 013643          202 FVNSSSSTCTQRVPPKNPKWAVYGRG-LDDVSEFFNSGNYDPPDKKSDGPRRKLF--------TKEEKVLLNKKLPHLAT  272 (439)
Q Consensus       202 ~l~~~~~~~~~~~~g~t~l~~A~~~g-~~eiv~~Ll~~ga~~n~~~~~~g~t~L~--------~~~~~~lL~~~~~d~~~  272 (439)
                      ++..+......+..|.||||+|+..| ..+++++|++.|++++..+ ..|.||||        ..++.++|++.|++++.
T Consensus        69 Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~-~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~  147 (471)
T PHA03095         69 LLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKD-KVGRTPLHVYLSGFNINPKVIRLLLRKGADVNA  147 (471)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCC-CCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCc
Confidence            34444455556668999999999999 5999999999999999998 89999998        35789999999999999


Q ss_pred             CCCCCchHHHHHHHcC--CHHHHHHHHhCCCCCcccCCCCChHHHHHHHc--CCHHHHHHHHHCCCCCCccCCCCCCHHH
Q 013643          273 ATSKKWLPLHSLAASG--EFYFVDALLKHNVDINAVDKDGLTALHKAIIG--KKQAVTNYLLRESANPFVVDEDGATLLH  348 (439)
Q Consensus       273 ~d~~g~tpLh~Aa~~g--~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~--g~~~iv~~LL~~ga~v~~~d~~g~TpLh  348 (439)
                      .+..|.||||+|+..+  +.+++++|+++|++++..+..|.||||+|+..  ++.+++++|+++|++++.+|..|.||||
T Consensus       148 ~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh  227 (471)
T PHA03095        148 LDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLH  227 (471)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            9999999999998876  68999999999999999899999999999975  7889999999999999999999999999


Q ss_pred             HHHHcCCH--HHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHH
Q 013643          349 YAVQTASS--PAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTF  426 (439)
Q Consensus       349 ~A~~~g~~--~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~  426 (439)
                      +|+..|+.  .+++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|||++.+|..|.|||++|+..|+.    
T Consensus       228 ~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~----  303 (471)
T PHA03095        228 SMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNG----  303 (471)
T ss_pred             HHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCH----
Confidence            99999874  688999999999999999999999999999999999999999999999999999999999999996    


Q ss_pred             HHHHHHhcCCC
Q 013643          427 GMIKLLKQLPT  437 (439)
Q Consensus       427 eiik~L~~~~~  437 (439)
                      +++++|++...
T Consensus       304 ~~v~~LL~~~~  314 (471)
T PHA03095        304 RAVRAALAKNP  314 (471)
T ss_pred             HHHHHHHHhCC
Confidence            88888877543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=295.11  Aligned_cols=223  Identities=24%  Similarity=0.285  Sum_probs=212.4

Q ss_pred             CCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC-----------hHHHHHHHhhcCCCcccCCCCCc
Q 013643          210 CTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF-----------TKEEKVLLNKKLPHLATATSKKW  278 (439)
Q Consensus       210 ~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~-----------~~~~~~lL~~~~~d~~~~d~~g~  278 (439)
                      ...+..+.||||.|+..|+.+++++|++.|++++..+ ..|.||++           ..+++++|++.|++++..+..|.
T Consensus        29 ~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~-~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~  107 (480)
T PHA03100         29 DYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSST-KNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGI  107 (480)
T ss_pred             hhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCcc-ccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCC
Confidence            3455678999999999999999999999999999988 88889987           45788999999999999999999


Q ss_pred             hHHHHHH--HcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcC--CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC
Q 013643          279 LPLHSLA--ASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGK--KQAVTNYLLRESANPFVVDEDGATLLHYAVQTA  354 (439)
Q Consensus       279 tpLh~Aa--~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g--~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g  354 (439)
                      ||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.+++++|+++|++++.++..|.||||+|+..|
T Consensus       108 tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~  187 (480)
T PHA03100        108 TPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG  187 (480)
T ss_pred             chhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC
Confidence            9999999  999999999999999999999999999999999999  999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCccCCCCC------CcHHHHHHHcCC--HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHH
Q 013643          355 SSPAIKILLLYNVDINLQDNDG------WTPLHLAVQARR--TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTF  426 (439)
Q Consensus       355 ~~~iV~~Ll~~gadin~~d~~G------~TpLh~A~~~g~--~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~  426 (439)
                      +.+++++|+++|++++..+..|      .||||+|+..|+  .+++++|+++|++++.+|..|.||||+|+..|+.    
T Consensus       188 ~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~----  263 (480)
T PHA03100        188 NIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNP----  263 (480)
T ss_pred             CHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH----
Confidence            9999999999999999999999      999999999999  9999999999999999999999999999999995    


Q ss_pred             HHHHHHhcCCC
Q 013643          427 GMIKLLKQLPT  437 (439)
Q Consensus       427 eiik~L~~~~~  437 (439)
                      +++++|++.+.
T Consensus       264 ~iv~~Ll~~ga  274 (480)
T PHA03100        264 EFVKYLLDLGA  274 (480)
T ss_pred             HHHHHHHHcCC
Confidence            99999998775

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.5e-33  Score=288.66  Aligned_cols=228  Identities=18%  Similarity=0.224  Sum_probs=201.6

Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC--------hHHHHHHHhhcCCCccc-
Q 013643          202 FVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF--------TKEEKVLLNKKLPHLAT-  272 (439)
Q Consensus       202 ~l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~--------~~~~~~lL~~~~~d~~~-  272 (439)
                      ++..+......+..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||        ..++.++|+++|++++. 
T Consensus        58 Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d-~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~  136 (446)
T PHA02946         58 LLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACD-KQHKTPLYYLSGTDDEVIERINLLVQYGAKINNS  136 (446)
T ss_pred             HHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCC-CCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccc
Confidence            334444456677889999999999999999999999999999998 89999998        25778899999999995 


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcC--CHHHHHHHHHCCCCCCccCCCCCCHHHHH
Q 013643          273 ATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGK--KQAVTNYLLRESANPFVVDEDGATLLHYA  350 (439)
Q Consensus       273 ~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g--~~~iv~~LL~~ga~v~~~d~~g~TpLh~A  350 (439)
                      .+..|.|||| ||..|+.+++++|+++|++++..|..|+||||+|+..+  +.+++++|+++|++++.+|..|.||||+|
T Consensus       137 ~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~A  215 (446)
T PHA02946        137 VDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIV  215 (446)
T ss_pred             cCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            6889999997 67779999999999999999999999999999998755  47899999999999999999999999999


Q ss_pred             HHcC--CHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCCC--------------------C-C
Q 013643          351 VQTA--SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR-TDIVKLLLIKGADKTL--------------------K-N  406 (439)
Q Consensus       351 ~~~g--~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~-~eiv~~LL~~Gadi~~--------------------~-d  406 (439)
                      +..|  +.+++++|+. |+++|.+|..|+||||+|+..++ .+++++|+.+|++++.                    . +
T Consensus       216 a~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~  294 (446)
T PHA02946        216 CSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGK  294 (446)
T ss_pred             HHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCc
Confidence            9986  7899999985 99999999999999999999988 5899999999876421                    1 2


Q ss_pred             CCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643          407 RDGLTPLDLCLYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       407 ~~G~TpL~~A~~~g~~~~~~eiik~L~~~~  436 (439)
                      ..|.||||+|+..|+.    +++++|++..
T Consensus       295 ~~~~TpLh~Aa~~g~~----eivk~Ll~~~  320 (446)
T PHA02946        295 QYDSTDFKMAVEVGSI----RCVKYLLDND  320 (446)
T ss_pred             ccCCCHHHHHHHcCCH----HHHHHHHHCC
Confidence            3577999999999995    9999999864

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-33  Score=292.55  Aligned_cols=206  Identities=24%  Similarity=0.213  Sum_probs=186.5

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCCh------------------------------------
Q 013643          213 RVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFT------------------------------------  256 (439)
Q Consensus       213 ~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~------------------------------------  256 (439)
                      ...+.||||.|+..|+.+++++|++.|++++..+ ..|.||||.                                    
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~  112 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPD-HRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNR  112 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcC
Confidence            3456778888888888888888888888888777 778888760                                    


Q ss_pred             ----------------------------------HHHHHHHhhcCCCcccCCCC-CchHHHHHHHcCCHHHHHHHHhCCC
Q 013643          257 ----------------------------------KEEKVLLNKKLPHLATATSK-KWLPLHSLAASGEFYFVDALLKHNV  301 (439)
Q Consensus       257 ----------------------------------~~~~~lL~~~~~d~~~~d~~-g~tpLh~Aa~~g~~eivk~LL~~ga  301 (439)
                                                        .++.++|++.|++++..+.. |+||||+||..|+.+++++|+++|+
T Consensus       113 ~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ga  192 (477)
T PHA02878        113 NVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGA  192 (477)
T ss_pred             CHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCC
Confidence                                              12677888899999999998 9999999999999999999999999


Q ss_pred             CCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCCccCCC-CCCcH
Q 013643          302 DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQT-ASSPAIKILLLYNVDINLQDN-DGWTP  379 (439)
Q Consensus       302 din~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~-g~~~iV~~Ll~~gadin~~d~-~G~Tp  379 (439)
                      +++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.. ++.+++++|+++|+++|.++. .|+||
T Consensus       193 d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~Tp  272 (477)
T PHA02878        193 NVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTA  272 (477)
T ss_pred             CCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCH
Confidence            9999999999999999999999999999999999999999999999999976 789999999999999999886 79999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Q 013643          380 LHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGR  421 (439)
Q Consensus       380 Lh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~  421 (439)
                      ||+|  .++.+++++|+++|||++..|..|.|||++|+..+.
T Consensus       273 Lh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~  312 (477)
T PHA02878        273 LHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYL  312 (477)
T ss_pred             HHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcC
Confidence            9999  578899999999999999999999999999998654

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-32  Score=285.11  Aligned_cols=217  Identities=25%  Similarity=0.274  Sum_probs=141.2

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHh-----------------------h
Q 013643          215 PPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLN-----------------------K  265 (439)
Q Consensus       215 ~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~-----------------------~  265 (439)
                      .+.||||.|+..|+.+++++|++.|++++..+ ..|.+||+      ..+++++|+                       +
T Consensus        34 ~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~-~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~  112 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVELFIKHGADINHIN-TKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD  112 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHH
Confidence            45566666666666666666666666665555 45555555      233333333                       3


Q ss_pred             cCCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCC
Q 013643          266 KLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGAT  345 (439)
Q Consensus       266 ~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~T  345 (439)
                      .|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus       113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~t  192 (434)
T PHA02874        113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGES  192 (434)
T ss_pred             CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCC
Confidence            34445555666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCC-------------------------------CCccCCCCCCcHHHHHHHcC-CHHHHH
Q 013643          346 LLHYAVQTASSPAIKILLLYNV-------------------------------DINLQDNDGWTPLHLAVQAR-RTDIVK  393 (439)
Q Consensus       346 pLh~A~~~g~~~iV~~Ll~~ga-------------------------------din~~d~~G~TpLh~A~~~g-~~eiv~  393 (439)
                      |||+|+..|+.+++++|++.|+                               +++.+|..|+||||+|+..+ +.++++
T Consensus       193 pL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~  272 (434)
T PHA02874        193 PLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIID  272 (434)
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHH
Confidence            6666666666666666666654                               45566667777777777765 678888


Q ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643          394 LLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       394 ~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~  435 (439)
                      +|+++|+|++.+|..|.|||++|+..++.   ..+++.|++.
T Consensus       273 ~Ll~~gad~n~~d~~g~TpL~~A~~~~~~---~~~ik~ll~~  311 (434)
T PHA02874        273 ILLYHKADISIKDNKGENPIDTAFKYINK---DPVIKDIIAN  311 (434)
T ss_pred             HHHHCcCCCCCCCCCCCCHHHHHHHhCCc---cHHHHHHHHh
Confidence            88888888888888888888888877632   2556666554

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.1e-33  Score=268.99  Aligned_cols=202  Identities=17%  Similarity=0.126  Sum_probs=184.6

Q ss_pred             cCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHHHhC
Q 013643          226 RGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKH  299 (439)
Q Consensus       226 ~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~  299 (439)
                      .+..+++++|++.|++  ..+ ..|.||||      +.+++++|+..+++++..+  ++||||+|+..|+.+++++|+++
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D-~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KAD-VHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCC-CCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHC
Confidence            4567999999999885  456 78999999      7789999999999988764  68999999999999999999999


Q ss_pred             CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCccCC-CCCC
Q 013643          300 NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA-TLLHYAVQTASSPAIKILLLYNVDINLQD-NDGW  377 (439)
Q Consensus       300 gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~-TpLh~A~~~g~~~iV~~Ll~~gadin~~d-~~G~  377 (439)
                      |++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|+ ||||+|+..|+.++|++|++++.+.  .+ ..|+
T Consensus        84 Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~  161 (284)
T PHA02791         84 GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILL  161 (284)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCc
Confidence            999999999999999999999999999999999999999988885 8999999999999999999987643  23 3589


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643          378 TPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTP-LDLCLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       378 TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~Tp-L~~A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                      ||||+|++.|+.+++++|+++|||++.+|..|.|| ||+|+..|+.    +++++|++++.+
T Consensus       162 TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~----e~v~lLl~~Ga~  219 (284)
T PHA02791        162 SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDL----EMLQALFKYDIN  219 (284)
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHCCCC
Confidence            99999999999999999999999999999999987 9999999995    999999988753

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-32  Score=287.07  Aligned_cols=233  Identities=21%  Similarity=0.232  Sum_probs=213.5

Q ss_pred             HHhhcCCCCCCCCCCCCcHHHHHHhcC---cHHHHHHHHhCCCCCCCCCCCCCCCcCC-------hHHHHHHHhhcCCCc
Q 013643          201 DFVNSSSSTCTQRVPPKNPKWAVYGRG---LDDVSEFFNSGNYDPPDKKSDGPRRKLF-------TKEEKVLLNKKLPHL  270 (439)
Q Consensus       201 ~~l~~~~~~~~~~~~g~t~l~~A~~~g---~~eiv~~Ll~~ga~~n~~~~~~g~t~L~-------~~~~~~lL~~~~~d~  270 (439)
                      .++..+......+..|.||||.|+..+   ..+++++|++.|+++|..+ ..|.||||       ..++.++|++.|+++
T Consensus        32 ~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~-~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i  110 (471)
T PHA03095         32 RLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPE-RCGFTPLHLYLYNATTLDVIKLLIKAGADV  110 (471)
T ss_pred             HHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCCcHHHHHHHHHcCCCC
Confidence            444455555566778999999999998   9999999999999999999 79999999       478999999999999


Q ss_pred             ccCCCCCchHHHHHH--HcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcC--CHHHHHHHHHCCCCCCccCCCCCCH
Q 013643          271 ATATSKKWLPLHSLA--ASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGK--KQAVTNYLLRESANPFVVDEDGATL  346 (439)
Q Consensus       271 ~~~d~~g~tpLh~Aa--~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g--~~~iv~~LL~~ga~v~~~d~~g~Tp  346 (439)
                      +..+..|+||||+|+  ..++.+++++|+++|++++..+..|.||||+|+..+  +.+++++|+++|++++..+..|.||
T Consensus       111 n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~  190 (471)
T PHA03095        111 NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSL  190 (471)
T ss_pred             CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence            999999999999999  556899999999999999999999999999999866  6899999999999999999999999


Q ss_pred             HHHHHHc--CCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCH--HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCc
Q 013643          347 LHYAVQT--ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRT--DIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD  422 (439)
Q Consensus       347 Lh~A~~~--g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~--eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~  422 (439)
                      ||+|+..  ++.+++++|++.|++++.+|..|+||||+|+..|+.  .+++.|+++|+|++.+|..|+||||+|+..|+.
T Consensus       191 Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~  270 (471)
T PHA03095        191 LHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNP  270 (471)
T ss_pred             HHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            9999875  778999999999999999999999999999999975  689999999999999999999999999999996


Q ss_pred             chHHHHHHHHhcCCCC
Q 013643          423 TRTFGMIKLLKQLPTS  438 (439)
Q Consensus       423 ~~~~eiik~L~~~~~~  438 (439)
                          +++++|++.+.+
T Consensus       271 ----~~v~~LL~~gad  282 (471)
T PHA03095        271 ----RACRRLIALGAD  282 (471)
T ss_pred             ----HHHHHHHHcCCC
Confidence                899999987653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1e-32  Score=295.50  Aligned_cols=235  Identities=19%  Similarity=0.122  Sum_probs=199.7

Q ss_pred             hhcCCCCCCCCCCCCcHHHHHHhcCc--HHHHHHHHhCCCCCCCCCCCCCCCcCCh------------------------
Q 013643          203 VNSSSSTCTQRVPPKNPKWAVYGRGL--DDVSEFFNSGNYDPPDKKSDGPRRKLFT------------------------  256 (439)
Q Consensus       203 l~~~~~~~~~~~~g~t~l~~A~~~g~--~eiv~~Ll~~ga~~n~~~~~~g~t~L~~------------------------  256 (439)
                      +..+......+..|.||||+|+..|+  .+++++|++.|+++|..+ ..|.||||.                        
T Consensus       199 Le~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD-~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~  277 (764)
T PHA02716        199 CNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKC-VNGMSPIMTYIINIDNINPEITNIYIESLDGNK  277 (764)
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHhhhccCHHHHHHHHHhccccc
Confidence            33444555667789999999999985  589999999999999998 899999972                        


Q ss_pred             -------------------HHHHHHHhhcCCCcccCCCCCchHHHHHHH--cCCHHHHHHHHhCCCCCcccCCCCChHHH
Q 013643          257 -------------------KEEKVLLNKKLPHLATATSKKWLPLHSLAA--SGEFYFVDALLKHNVDINAVDKDGLTALH  315 (439)
Q Consensus       257 -------------------~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~--~g~~eivk~LL~~gadin~~d~~g~t~L~  315 (439)
                                         .+++++|++.|++++..|..|+||||+|+.  .++.+++++|+++|++++.+|..|+||||
T Consensus       278 ~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH  357 (764)
T PHA02716        278 VKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLH  357 (764)
T ss_pred             cccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHH
Confidence                               245678889999999999999999999864  46889999999999999999999999999


Q ss_pred             HHHH--------------cCCHHHHHHHHHCCCCCCccCCCCCCHHHHH----HHcCCHHHHHHHHhCCC----------
Q 013643          316 KAII--------------GKKQAVTNYLLRESANPFVVDEDGATLLHYA----VQTASSPAIKILLLYNV----------  367 (439)
Q Consensus       316 ~Aa~--------------~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A----~~~g~~~iV~~Ll~~ga----------  367 (439)
                      +|+.              .++.+++++|+++|++++.++..|.||||.|    ...++.+++++|+..|+          
T Consensus       358 ~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q  437 (764)
T PHA02716        358 TYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQ  437 (764)
T ss_pred             HHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhh
Confidence            9875              3689999999999999999999999999942    23467888888877542          


Q ss_pred             ---------------------------------------------------CCccCCCCCCcHHHHHHHcCCH-----HH
Q 013643          368 ---------------------------------------------------DINLQDNDGWTPLHLAVQARRT-----DI  391 (439)
Q Consensus       368 ---------------------------------------------------din~~d~~G~TpLh~A~~~g~~-----ei  391 (439)
                                                                         ++|..|..|+||||+|+..|+.     ++
T Consensus       438 ~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~  517 (764)
T PHA02716        438 DLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDS  517 (764)
T ss_pred             hhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHH
Confidence                                                               2345577899999999999886     45


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCc-chHHHHHHHHhcCCCC
Q 013643          392 VKLLLIKGADKTLKNRDGLTPLDLCLYSGRD-TRTFGMIKLLKQLPTS  438 (439)
Q Consensus       392 v~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~-~~~~eiik~L~~~~~~  438 (439)
                      +++|+++|||++.+|+.|+||||+|+..|+. ....+|++.|++.+.+
T Consensus       518 ~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~  565 (764)
T PHA02716        518 FVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPN  565 (764)
T ss_pred             HHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCC
Confidence            5999999999999999999999999999984 2346899999987654

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-32  Score=288.14  Aligned_cols=217  Identities=21%  Similarity=0.209  Sum_probs=148.6

Q ss_pred             CCCCcHHHHHH-hc-CcHHHHHHHHhCCCCCCCCCCCCCCCcCCh------------HHHHHHHhhcCCCcccCCCCCch
Q 013643          214 VPPKNPKWAVY-GR-GLDDVSEFFNSGNYDPPDKKSDGPRRKLFT------------KEEKVLLNKKLPHLATATSKKWL  279 (439)
Q Consensus       214 ~~g~t~l~~A~-~~-g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~------------~~~~~lL~~~~~d~~~~d~~g~t  279 (439)
                      ..|.++++.++ .. ++.+++++|+++|+++|..+  .+.|||+.            .+++++|+++|++++..+..|+|
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~--~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~t  110 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG--YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVS  110 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC--CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCc
Confidence            34556554322 22 35666666666666666543  34566651            24566666666666666666666


Q ss_pred             HHHHHHHc---CCHHHHHHHHhCCCCC-cccCCCCChHHHHHHHc--CCHHHHHHHHHCCCCCCc-cCCCCCCHHHHHHH
Q 013643          280 PLHSLAAS---GEFYFVDALLKHNVDI-NAVDKDGLTALHKAIIG--KKQAVTNYLLRESANPFV-VDEDGATLLHYAVQ  352 (439)
Q Consensus       280 pLh~Aa~~---g~~eivk~LL~~gadi-n~~d~~g~t~L~~Aa~~--g~~~iv~~LL~~ga~v~~-~d~~g~TpLh~A~~  352 (439)
                      |||.|+..   |+.+++++|+++|+++ +..+..|+||||+|+..  ++.++|++|+++|++++. .+..|.||||+|+.
T Consensus       111 pL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~  190 (494)
T PHA02989        111 PIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLR  190 (494)
T ss_pred             HHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHh
Confidence            66655543   4566666666666666 56666666666666543  456666666666666665 45566666666655


Q ss_pred             cC----CHHHHHHHHhCCCC--------------------------------------CccCCCCCCcHHHHHHHcCCHH
Q 013643          353 TA----SSPAIKILLLYNVD--------------------------------------INLQDNDGWTPLHLAVQARRTD  390 (439)
Q Consensus       353 ~g----~~~iV~~Ll~~gad--------------------------------------in~~d~~G~TpLh~A~~~g~~e  390 (439)
                      .+    +.+++++|+++|++                                      +|.+|..|+||||+|+..|+.+
T Consensus       191 ~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~  270 (494)
T PHA02989        191 NDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYE  270 (494)
T ss_pred             cccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHH
Confidence            43    56666666666554                                      4556667999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643          391 IVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       391 iv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~  436 (439)
                      ++++|+++|||++.+|..|.|||++|+..|+.    +++++|++..
T Consensus       271 ~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~----~iv~~LL~~~  312 (494)
T PHA02989        271 AFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNI----DMLNRILQLK  312 (494)
T ss_pred             HHHHHHHcCCCccccCCCCCCHHHHHHHcCCH----HHHHHHHhcC
Confidence            99999999999999999999999999999996    8888888754

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-33  Score=243.25  Aligned_cols=191  Identities=27%  Similarity=0.382  Sum_probs=171.3

Q ss_pred             hHHHhhcCC-CCC-CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCC
Q 013643          199 FQDFVNSSS-STC-TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSK  276 (439)
Q Consensus       199 ~~~~l~~~~-~~~-~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~  276 (439)
                      ..++..+.+ ++. ..+.+|+||||||++.|+.+|+++|++. .+                          ..++..|..
T Consensus        19 veel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-~n--------------------------v~~ddkDda   71 (226)
T KOG4412|consen   19 VEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ-PN--------------------------VKPDDKDDA   71 (226)
T ss_pred             HHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhc-CC--------------------------CCCCCcccc
Confidence            445566655 333 3445899999999999999999999962 11                          223445778


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643          277 KWLPLHSLAASGEFYFVDALLKH-NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS  355 (439)
Q Consensus       277 g~tpLh~Aa~~g~~eivk~LL~~-gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~  355 (439)
                      ||||||.||..|+.++|+.|+.+ |+|+|..+..|+|+||||+..|.++|+++|+++|+.++.+|..|.||||-|+.-|+
T Consensus        72 GWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGk  151 (226)
T KOG4412|consen   72 GWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGK  151 (226)
T ss_pred             CCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccc
Confidence            99999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 013643          356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCL  417 (439)
Q Consensus       356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~  417 (439)
                      ++++++|+..|+.+|.+|..|+||||.|.-.|+.++..+|+++|||+...|+.| ||+..|+
T Consensus       152 lkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  152 LKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             hhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHH
Confidence            999999999999999999999999999999999999999999999999999998 9987766

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.4e-32  Score=280.32  Aligned_cols=209  Identities=22%  Similarity=0.217  Sum_probs=179.1

Q ss_pred             CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHH
Q 013643          211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSL  284 (439)
Q Consensus       211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~A  284 (439)
                      ..+..|.||||.|+..|+.+++++|++.|++++..+ ..|.||||      ..++.++|++.|++++..+..|+||||+|
T Consensus       119 ~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d-~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A  197 (434)
T PHA02874        119 IKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIED-DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNA  197 (434)
T ss_pred             CCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcC-CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            345578889999999999999999999999988888 78889988      67888888888988888888899999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC-CHHHHHHHH
Q 013643          285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTA-SSPAIKILL  363 (439)
Q Consensus       285 a~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g-~~~iV~~Ll  363 (439)
                      +..|+.+++++|+++|++++..+..|.||||+|+..+. +++.+|+ .|++++.+|..|.||||+|+..+ +.+++++|+
T Consensus       198 ~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll  275 (434)
T PHA02874        198 AEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILL  275 (434)
T ss_pred             HHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHH
Confidence            99999999999999999888888889999999988765 4566665 57889999999999999999876 789999999


Q ss_pred             hCCCCCccCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCC-CCHHHHHHHcCCc
Q 013643          364 LYNVDINLQDNDGWTPLHLAVQAR-RTDIVKLLLIKGADKTLKNRDG-LTPLDLCLYSGRD  422 (439)
Q Consensus       364 ~~gadin~~d~~G~TpLh~A~~~g-~~eiv~~LL~~Gadi~~~d~~G-~TpL~~A~~~g~~  422 (439)
                      .+|++++.+|..|+||||+|++.+ ..++++.|+.+++.++..+..+ .+.+..+...++.
T Consensus       276 ~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~  336 (434)
T PHA02874        276 YHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLEHIEIKDNK  336 (434)
T ss_pred             HCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchhhccccchhHHHHHHHHhccc
Confidence            999999999999999999999988 6789999999999887666555 4567776666654

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=7.3e-32  Score=278.79  Aligned_cols=215  Identities=20%  Similarity=0.244  Sum_probs=194.4

Q ss_pred             CCcHHHHHH--hcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHc
Q 013643          216 PKNPKWAVY--GRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAAS  287 (439)
Q Consensus       216 g~t~l~~A~--~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~  287 (439)
                      +.++||.++  .+.+.+++++|++.|+++|..+ ..|.||||      +.+++++|+++|++++..|..|+||||+|+..
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d-~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~  115 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYSPNETD-DDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGT  115 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCCCCccC-CCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence            367888765  4557899999999999999999 89999999      78999999999999999999999999999987


Q ss_pred             C--CHHHHHHHHhCCCCCcc-cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC--HHHHHHH
Q 013643          288 G--EFYFVDALLKHNVDINA-VDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS--SPAIKIL  362 (439)
Q Consensus       288 g--~~eivk~LL~~gadin~-~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~--~~iV~~L  362 (439)
                      +  ..+++++|+++|++++. .+..|.|||| ||..|+.+++++|++.|++++.+|..|.||||+|+..++  .+++++|
T Consensus       116 ~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~L  194 (446)
T PHA02946        116 DDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWM  194 (446)
T ss_pred             CCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHH
Confidence            6  48999999999999995 6889999997 677899999999999999999999999999999987654  6899999


Q ss_pred             HhCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643          363 LLYNVDINLQDNDGWTPLHLAVQAR--RTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       363 l~~gadin~~d~~G~TpLh~A~~~g--~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~  436 (439)
                      +++|++++.+|..|+||||+|+..|  +.+++++|+. |+|++.+|..|.||||+|+..++.   .+++++|++.+
T Consensus       195 l~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~---~~~~~~Ll~~g  266 (446)
T PHA02946        195 MKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSP---AHLINKLLSTS  266 (446)
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCCh---HHHHHHHHhCC
Confidence            9999999999999999999999986  8899999995 999999999999999999999884   36777777654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.9e-31  Score=285.78  Aligned_cols=240  Identities=17%  Similarity=0.177  Sum_probs=200.7

Q ss_pred             chHHHhhcCC--CCCCC-CCCCCcHHHHHHhc--CcHHHHHHHHhCCCCCCCCCCCCCCCcCC--------hHHHHHHHh
Q 013643          198 GFQDFVNSSS--STCTQ-RVPPKNPKWAVYGR--GLDDVSEFFNSGNYDPPDKKSDGPRRKLF--------TKEEKVLLN  264 (439)
Q Consensus       198 ~~~~~l~~~~--~~~~~-~~~g~t~l~~A~~~--g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~--------~~~~~~lL~  264 (439)
                      ++-.++....  ..... +..|.||||+|+..  ++.+++++|++.|++++..+ ..|.||||        ..+++++|+
T Consensus       156 eiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD-~~G~TPLH~Aa~~g~~~~eIVklLL  234 (764)
T PHA02716        156 DLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQN-NHLITPLHTYLITGNVCASVIKKII  234 (764)
T ss_pred             HHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCCCHHHHHHHH
Confidence            3334444433  33334 56799999988654  57899999999999999999 89999998        247899999


Q ss_pred             hcCCCcccCCCCCchHHHHH-------------------------------------HHcCCHHHHHHHHhCCCCCcccC
Q 013643          265 KKLPHLATATSKKWLPLHSL-------------------------------------AASGEFYFVDALLKHNVDINAVD  307 (439)
Q Consensus       265 ~~~~d~~~~d~~g~tpLh~A-------------------------------------a~~g~~eivk~LL~~gadin~~d  307 (439)
                      +.|++++..+..|+||||+|                                     +..|+.+++++|+++|++++.+|
T Consensus       235 e~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD  314 (764)
T PHA02716        235 ELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKD  314 (764)
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccC
Confidence            99999999999999999975                                     45588999999999999999999


Q ss_pred             CCCChHHHHHHH--cCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHH--------------cCCHHHHHHHHhCCCCCcc
Q 013643          308 KDGLTALHKAII--GKKQAVTNYLLRESANPFVVDEDGATLLHYAVQ--------------TASSPAIKILLLYNVDINL  371 (439)
Q Consensus       308 ~~g~t~L~~Aa~--~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~--------------~g~~~iV~~Ll~~gadin~  371 (439)
                      ..|+||||+|+.  .++.+++++|+++|++++.+|..|.||||+|+.              .++.++|++|+++|++++.
T Consensus       315 ~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~  394 (764)
T PHA02716        315 SAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA  394 (764)
T ss_pred             CCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCC
Confidence            999999999875  468899999999999999999999999999875              3689999999999999999


Q ss_pred             CCCCCCcHHHH----HHHcCCHHHHHHHHHcCC-----------------------------------------------
Q 013643          372 QDNDGWTPLHL----AVQARRTDIVKLLLIKGA-----------------------------------------------  400 (439)
Q Consensus       372 ~d~~G~TpLh~----A~~~g~~eiv~~LL~~Ga-----------------------------------------------  400 (439)
                      +|..|+||||.    |...++.+++++|++.|+                                               
T Consensus       395 kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~  474 (764)
T PHA02716        395 VNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDST  474 (764)
T ss_pred             cCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhcccc
Confidence            99999999994    223567899999887653                                               


Q ss_pred             --------------CCCCCCCCCCCHHHHHHHcCCcchH-HHHHHHHhcCCCC
Q 013643          401 --------------DKTLKNRDGLTPLDLCLYSGRDTRT-FGMIKLLKQLPTS  438 (439)
Q Consensus       401 --------------di~~~d~~G~TpL~~A~~~g~~~~~-~eiik~L~~~~~~  438 (439)
                                    +++..|..|+||||+|+..|+...+ .+++++|++.+.+
T Consensus       475 ~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GAD  527 (764)
T PHA02716        475 KIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYN  527 (764)
T ss_pred             ccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCC
Confidence                          2344577899999999999986443 5778999998754

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.6e-31  Score=271.65  Aligned_cols=215  Identities=18%  Similarity=0.141  Sum_probs=195.6

Q ss_pred             cCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcc-cCCCCC
Q 013643          205 SSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLA-TATSKK  277 (439)
Q Consensus       205 ~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~-~~d~~g  277 (439)
                      .+.........|.||||.|+..|+.+++++|++.|++++..+ ..+.+|||      ..+++++|+..+.+.+ ..+..|
T Consensus        24 ~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  102 (413)
T PHA02875         24 IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKY-PDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDG  102 (413)
T ss_pred             CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccC-CCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCC
Confidence            333334455679999999999999999999999999999887 78999999      7788899999887664 456789


Q ss_pred             chHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH
Q 013643          278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSP  357 (439)
Q Consensus       278 ~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~  357 (439)
                      .||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus       103 ~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~e  182 (413)
T PHA02875        103 MTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIA  182 (413)
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCccCCCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCCCC---CCCCCCHHHHHHHcC
Q 013643          358 AIKILLLYNVDINLQDNDGW-TPLHLAVQARRTDIVKLLLIKGADKTLK---NRDGLTPLDLCLYSG  420 (439)
Q Consensus       358 iV~~Ll~~gadin~~d~~G~-TpLh~A~~~g~~eiv~~LL~~Gadi~~~---d~~G~TpL~~A~~~g  420 (439)
                      ++++|+++|++++..+..|. ||+|+|+..|+.+++++|+++|||++..   +..|.||++++...+
T Consensus       183 iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~~  249 (413)
T PHA02875        183 ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNMC  249 (413)
T ss_pred             HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhhc
Confidence            99999999999999988875 8899999999999999999999999875   677899999887554

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.6e-31  Score=277.54  Aligned_cols=227  Identities=15%  Similarity=0.157  Sum_probs=159.4

Q ss_pred             cCCCCCCCCCCCCcHHHHHHhc-----CcHHHHHHHHhCCCCCCCCCCCCCCCcCC---------hHHHHHHHhhcCCCc
Q 013643          205 SSSSTCTQRVPPKNPKWAVYGR-----GLDDVSEFFNSGNYDPPDKKSDGPRRKLF---------TKEEKVLLNKKLPHL  270 (439)
Q Consensus       205 ~~~~~~~~~~~g~t~l~~A~~~-----g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~---------~~~~~~lL~~~~~d~  270 (439)
                      .+......+..|.||||.|+.+     +..+++++|+++|+++|..+ ..|.||||         ..++.++|+++|+++
T Consensus        60 ~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d-~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv  138 (489)
T PHA02798         60 LGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKN-SDGETPLYCLLSNGYINNLEILLFMIENGADT  138 (489)
T ss_pred             CCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCC-CCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc
Confidence            3333344455666666665543     45666666666666666666 56666666         245666666666666


Q ss_pred             ccCCCCCchHHHHHHHcCC---HHHHHHHHhCCCCCcccC-CCCChHHHHHHHc----CCHHHHHHHHHCCCCCCccCCC
Q 013643          271 ATATSKKWLPLHSLAASGE---FYFVDALLKHNVDINAVD-KDGLTALHKAIIG----KKQAVTNYLLRESANPFVVDED  342 (439)
Q Consensus       271 ~~~d~~g~tpLh~Aa~~g~---~eivk~LL~~gadin~~d-~~g~t~L~~Aa~~----g~~~iv~~LL~~ga~v~~~d~~  342 (439)
                      +..+..|.||||+|+..|+   .+++++|+++|++++..+ ..|.||||.++..    ++.+++++|+++|++++..+..
T Consensus       139 n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~  218 (489)
T PHA02798        139 TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKS  218 (489)
T ss_pred             cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCcc
Confidence            6666666666666666665   666666666666666553 3466666666543    3566666666666666666666


Q ss_pred             CCCHHH-------HHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 013643          343 GATLLH-------YAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL  415 (439)
Q Consensus       343 g~TpLh-------~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~  415 (439)
                      |.++++       ++...++.+++++|+. |+|+|.+|..|+||||+|+..|+.+++++|+++|||++.+|..|.|||++
T Consensus       219 ~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~  297 (489)
T PHA02798        219 HKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFT  297 (489)
T ss_pred             ccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHH
Confidence            666554       1233445566666544 47888889999999999999999999999999999999999999999999


Q ss_pred             HHHcCCcchHHHHHHHHhcCCC
Q 013643          416 CLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       416 A~~~g~~~~~~eiik~L~~~~~  437 (439)
                      |+..|+.    ++++.|++...
T Consensus       298 A~~~~~~----~iv~~lL~~~~  315 (489)
T PHA02798        298 AFENESK----FIFNSILNKKP  315 (489)
T ss_pred             HHHcCcH----HHHHHHHccCC
Confidence            9999995    88888877653

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.98  E-value=8.7e-31  Score=285.20  Aligned_cols=229  Identities=23%  Similarity=0.189  Sum_probs=158.8

Q ss_pred             CCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCc--------------------------------
Q 013643          206 SSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRK--------------------------------  253 (439)
Q Consensus       206 ~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~--------------------------------  253 (439)
                      +......+..|+||||.|+..|+.+++++|++.|++++..+ ..|.|+                                
T Consensus       168 Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~-~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~  246 (682)
T PHA02876        168 GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIA-LDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLK  246 (682)
T ss_pred             CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccC-CCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHH
Confidence            33344556678888888888888888888888888777655 444444                                


Q ss_pred             ------------------------------CC-------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcC-CHHHHHH
Q 013643          254 ------------------------------LF-------TKEEKVLLNKKLPHLATATSKKWLPLHSLAASG-EFYFVDA  295 (439)
Q Consensus       254 ------------------------------L~-------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g-~~eivk~  295 (439)
                                                    ||       ..++..+|.+.|++++..+..|+||||+|+..| +.+++++
T Consensus       247 ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~  326 (682)
T PHA02876        247 AIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRT  326 (682)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHH
Confidence                                          44       123445555555555555555566666665555 3555666


Q ss_pred             HHhCCCCCcccCCCCChHHHHHHHc-CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCC
Q 013643          296 LLKHNVDINAVDKDGLTALHKAIIG-KKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDN  374 (439)
Q Consensus       296 LL~~gadin~~d~~g~t~L~~Aa~~-g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~  374 (439)
                      |+..|++++..+..|.||||+|+.. ++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus       327 Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~  406 (682)
T PHA02876        327 LIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQ  406 (682)
T ss_pred             HHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCC
Confidence            6666666666666666666666553 356667777777777777777777777777777777777777777777777777


Q ss_pred             CCCcHHHHHHHcCC-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643          375 DGWTPLHLAVQARR-TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       375 ~G~TpLh~A~~~g~-~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                      .|.||||+|+..++ ..++++|+++|+|++.+|..|+||||+|+..|..   .+++++|++.+.+
T Consensus       407 ~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~---~~iv~lLl~~Gad  468 (682)
T PHA02876        407 KIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCK---LDVIEMLLDNGAD  468 (682)
T ss_pred             CCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCc---HHHHHHHHHCCCC
Confidence            77777777776554 4567888888888888888899999999887743   4788888887653

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=282.61  Aligned_cols=225  Identities=21%  Similarity=0.192  Sum_probs=203.7

Q ss_pred             cCCCCCCCCCCCCcHHHHHHhcCcH-HHHHHHHhCCCCCCCCCCCCCCCcCC-------hHHHHHHHhhcCCCcccCCCC
Q 013643          205 SSSSTCTQRVPPKNPKWAVYGRGLD-DVSEFFNSGNYDPPDKKSDGPRRKLF-------TKEEKVLLNKKLPHLATATSK  276 (439)
Q Consensus       205 ~~~~~~~~~~~g~t~l~~A~~~g~~-eiv~~Ll~~ga~~n~~~~~~g~t~L~-------~~~~~~lL~~~~~d~~~~d~~  276 (439)
                      .+......+..|.||||.|+..+.. +++++|++.|++++..+ ..|.||||       ..+..++|...|++++..+..
T Consensus       262 ~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d-~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~  340 (682)
T PHA02876        262 AGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKN-IKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRL  340 (682)
T ss_pred             CCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccC
Confidence            3334455566899999999999885 69999999999999999 89999999       367889999999999999999


Q ss_pred             CchHHHHHHHc-CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643          277 KWLPLHSLAAS-GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS  355 (439)
Q Consensus       277 g~tpLh~Aa~~-g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~  355 (439)
                      |+||||+|+.. ++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus       341 g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~  420 (682)
T PHA02876        341 YITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTN  420 (682)
T ss_pred             CCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCC
Confidence            99999999985 57899999999999999999999999999999999999999999999999999999999999998766


Q ss_pred             -HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHh
Q 013643          356 -SPAIKILLLYNVDINLQDNDGWTPLHLAVQAR-RTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK  433 (439)
Q Consensus       356 -~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g-~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~  433 (439)
                       ..++++|++.|+++|.+|..|+||||+|+..| +.+++++|+++|+|++.+|..|.|||++|+..+.      ++++|+
T Consensus       421 ~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~~------~v~~Ll  494 (682)
T PHA02876        421 PYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYHG------IVNILL  494 (682)
T ss_pred             HHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCC------HHHHHH
Confidence             56799999999999999999999999999977 6899999999999999999999999999998653      455555


Q ss_pred             cCC
Q 013643          434 QLP  436 (439)
Q Consensus       434 ~~~  436 (439)
                      ..+
T Consensus       495 ~~~  497 (682)
T PHA02876        495 HYG  497 (682)
T ss_pred             HCC
Confidence            543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.3e-31  Score=233.25  Aligned_cols=158  Identities=29%  Similarity=0.393  Sum_probs=148.7

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHH-hCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHH
Q 013643          274 TSKKWLPLHSLAASGEFYFVDALL-KHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRE-SANPFVVDEDGATLLHYAV  351 (439)
Q Consensus       274 d~~g~tpLh~Aa~~g~~eivk~LL-~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~-ga~v~~~d~~g~TpLh~A~  351 (439)
                      |.+|+||||+||..|+.+++.+|+ +.+..+|..|..||||||.||..|+.++|+-|+.+ |+++|..+..|.|+||||+
T Consensus        35 dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAa  114 (226)
T KOG4412|consen   35 DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAA  114 (226)
T ss_pred             cccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhh
Confidence            458899999999999999999999 55888999999999999999999999999999988 9999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHH
Q 013643          352 QTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKL  431 (439)
Q Consensus       352 ~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~  431 (439)
                      -.|+.+++++|+++|+.++.+|..|.||||-|+.-|.++++++|+..|+.+|..|+.|+||||+|...||.    +...+
T Consensus       115 gK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~----d~a~l  190 (226)
T KOG4412|consen  115 GKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHP----DVAVL  190 (226)
T ss_pred             cCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCc----hHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997    45555


Q ss_pred             HhcC
Q 013643          432 LKQL  435 (439)
Q Consensus       432 L~~~  435 (439)
                      |.+.
T Consensus       191 LV~~  194 (226)
T KOG4412|consen  191 LVRA  194 (226)
T ss_pred             HHHh
Confidence            5443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=2.2e-31  Score=260.74  Aligned_cols=204  Identities=25%  Similarity=0.343  Sum_probs=184.0

Q ss_pred             CCCCCCCCcHHHHHHhcCcHHHHHHHHh-CCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcC
Q 013643          210 CTQRVPPKNPKWAVYGRGLDDVSEFFNS-GNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASG  288 (439)
Q Consensus       210 ~~~~~~g~t~l~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g  288 (439)
                      .+...+|.|||..|+.+|+.++|+||++ .++++....     +               ...+-....|-+||..|+..|
T Consensus        36 ~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~G-----s---------------V~FDge~IegappLWaAsaAG   95 (615)
T KOG0508|consen   36 IGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGG-----S---------------VRFDGETIEGAPPLWAASAAG   95 (615)
T ss_pred             hccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCc-----e---------------EEeCCcccCCCchhhHHhccC
Confidence            4567788899999999999999999999 577776543     1               222333556789999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Q 013643          289 EFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD  368 (439)
Q Consensus       289 ~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gad  368 (439)
                      |+++|+.|+++|+++|.....+.|||-.||..|++++|++|+++|+|++..++.|+|.||+||..|+.+|+++|++.|+|
T Consensus        96 Hl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD  175 (615)
T KOG0508|consen   96 HLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGAD  175 (615)
T ss_pred             cHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCC
Confidence            99999999999999999988888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643          369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       369 in~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                      +|.++..|+|+||.|+..|++|++++|+.+|+-+.. |..|.|||..|+..|+.    .++.+|++..++
T Consensus       176 vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~----~iVe~L~~~~~s  240 (615)
T KOG0508|consen  176 VNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHT----DIVERLLQCETS  240 (615)
T ss_pred             cchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcch----HHHHHHhcCCcc
Confidence            999999999999999999999999999999998875 44599999999999997    899999876554

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=2e-30  Score=263.75  Aligned_cols=201  Identities=29%  Similarity=0.297  Sum_probs=188.7

Q ss_pred             cHHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCC-CCCchHHHHHHHcCC
Q 013643          218 NPKWAVYGRGLDDVSEFFNSG-NYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATAT-SKKWLPLHSLAASGE  289 (439)
Q Consensus       218 t~l~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d-~~g~tpLh~Aa~~g~  289 (439)
                      .-...|++.|..+.++.|++. |.+++..+ ..|.++||      ..++.++|+++|+++|..+ ..+.||||+||++|+
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v~~~D-~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESVNNPD-REGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCCCCCC-cCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            446788889999999999988 99999998 79999999      7788999999999999887 667899999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Q 013643          290 FYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDI  369 (439)
Q Consensus       290 ~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadi  369 (439)
                      +.+|++|+++|||++.+|..|.++||+||..|+..+|-|||.+|++++.+|.+|+||||+|+.+|+...+..|++.|+.+
T Consensus       125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~  204 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASL  204 (600)
T ss_pred             HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             ccCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Q 013643          370 NLQD-NDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYS  419 (439)
Q Consensus       370 n~~d-~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~  419 (439)
                      +..| ..|+||||||+..|+..++.+|++.|++.+..|.+|.||+++|...
T Consensus       205 ~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  205 LLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9998 8999999999999999999977788999999999999999999877

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=5.1e-29  Score=261.61  Aligned_cols=206  Identities=21%  Similarity=0.263  Sum_probs=181.6

Q ss_pred             cCcHHHHHHHHhCCCCCCCCCCCCCCCcCC--------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcC------CHH
Q 013643          226 RGLDDVSEFFNSGNYDPPDKKSDGPRRKLF--------TKEEKVLLNKKLPHLATATSKKWLPLHSLAASG------EFY  291 (439)
Q Consensus       226 ~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~--------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g------~~e  291 (439)
                      ....+++++|++.|+++|..  ..|.|+++        ..+++++|+++|++++..+ .+.||||.|+..+      +.+
T Consensus        13 ~~~~~~v~~LL~~GadvN~~--~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~   89 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEE--YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKK   89 (494)
T ss_pred             cCcHHHHHHHHHcCCCcccc--cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHH
Confidence            35789999999999999987  36888875        4689999999999999876 5689999998754      478


Q ss_pred             HHHHHHhCCCCCcccCCCCChHHHHHHHc---CCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHc--CCHHHHHHHHhC
Q 013643          292 FVDALLKHNVDINAVDKDGLTALHKAIIG---KKQAVTNYLLRESANP-FVVDEDGATLLHYAVQT--ASSPAIKILLLY  365 (439)
Q Consensus       292 ivk~LL~~gadin~~d~~g~t~L~~Aa~~---g~~~iv~~LL~~ga~v-~~~d~~g~TpLh~A~~~--g~~~iV~~Ll~~  365 (439)
                      ++++|+++|+++|.++..|.||||.|+..   ++.+++++|+++|+++ +.++..|.||||+|+..  ++.++|++|+++
T Consensus        90 iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~  169 (494)
T PHA02989         90 IVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF  169 (494)
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence            99999999999999999999999998765   6799999999999999 78999999999998764  689999999999


Q ss_pred             CCCCcc-CCCCCCcHHHHHHHcC----CHHHHHHHHHcCCCCCC------------------------------------
Q 013643          366 NVDINL-QDNDGWTPLHLAVQAR----RTDIVKLLLIKGADKTL------------------------------------  404 (439)
Q Consensus       366 gadin~-~d~~G~TpLh~A~~~g----~~eiv~~LL~~Gadi~~------------------------------------  404 (439)
                      |++++. .+..|.||||+|+..+    +.+++++|+++|++++.                                    
T Consensus       170 Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~adv  249 (494)
T PHA02989        170 GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKI  249 (494)
T ss_pred             CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCC
Confidence            999998 6889999999998764    89999999999987654                                    


Q ss_pred             --CCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643          405 --KNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       405 --~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                        +|..|+||||+|+..|+.    +++++|++.+.+
T Consensus       250 n~~d~~G~TpL~~Aa~~~~~----~~v~~LL~~Gad  281 (494)
T PHA02989        250 NKKDKKGFNPLLISAKVDNY----EAFNYLLKLGDD  281 (494)
T ss_pred             CCCCCCCCCHHHHHHHhcCH----HHHHHHHHcCCC
Confidence              445699999999999995    999999987653

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=4.1e-29  Score=258.46  Aligned_cols=232  Identities=23%  Similarity=0.238  Sum_probs=203.1

Q ss_pred             HHhhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhh-----cCCC
Q 013643          201 DFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNK-----KLPH  269 (439)
Q Consensus       201 ~~l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~-----~~~d  269 (439)
                      -++..+.+...++..+.||||.|+..++.|..+.|+..|+++-..+ ..|++|+|      ..+..++.+.     ....
T Consensus       139 ~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~-~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~  217 (929)
T KOG0510|consen  139 LLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSD-IDGNFPIHEAARSGSKECMEIFLPEHGYERQTH  217 (929)
T ss_pred             HHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCccc-CcCCchHHHHHHhcchhhhhhhhccccchhhcc
Confidence            3344555556677788999999999999998899999999999888 89999988      6677777766     6788


Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCC---------------cccCCCCChHHHHHHHcCCHHHHHHHHHCCC
Q 013643          270 LATATSKKWLPLHSLAASGEFYFVDALLKHNVDI---------------NAVDKDGLTALHKAIIGKKQAVTNYLLRESA  334 (439)
Q Consensus       270 ~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadi---------------n~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga  334 (439)
                      ++..+..|.+|||.|+..|+.++++.+|+.|..+               |..|.+|.||||+||+.|+.+.++.|+..|+
T Consensus       218 in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga  297 (929)
T KOG0510|consen  218 INFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGA  297 (929)
T ss_pred             cccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCC
Confidence            8888999999999999999999999999886542               3457889999999999999999999999999


Q ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHh-CC-CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCC
Q 013643          335 NPFVVDEDGATLLHYAVQTASSPAIKILLL-YN-VDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKT---LKNRDG  409 (439)
Q Consensus       335 ~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~-~g-adin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~---~~d~~G  409 (439)
                      +++.++.++.||||.|+..|+..+|+-|++ .| ..+|..|..|+||||.|++.||..++++|+++||+..   ..|.+|
T Consensus       298 ~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg  377 (929)
T KOG0510|consen  298 SINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDG  377 (929)
T ss_pred             cccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCC
Confidence            999999999999999999999999999998 43 4578889999999999999999999999999999987   459999


Q ss_pred             CCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643          410 LTPLDLCLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       410 ~TpL~~A~~~g~~~~~~eiik~L~~~~~  437 (439)
                      .||||.|+..|+.    ..|++|+.++.
T Consensus       378 ~TaLH~Aa~~g~~----~av~~Li~~Ga  401 (929)
T KOG0510|consen  378 NTALHLAAKYGNT----SAVQKLISHGA  401 (929)
T ss_pred             chhhhHHHHhccH----HHHHHHHHcCC
Confidence            9999999999997    78888887664

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=9.2e-29  Score=230.87  Aligned_cols=174  Identities=20%  Similarity=0.189  Sum_probs=156.5

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcC--CHHHH
Q 013643          216 PKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASG--EFYFV  293 (439)
Q Consensus       216 g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g--~~eiv  293 (439)
                      ++|||++|+..|+.++++.|+..   ++.                            .+..|.||||+|+..+  +.+++
T Consensus        21 ~~~pL~~A~~~~~~~~vk~Li~~---~n~----------------------------~~~~g~TpLh~a~~~~~~~~eiv   69 (209)
T PHA02859         21 YCNPLFYYVEKDDIEGVKKWIKF---VND----------------------------CNDLYETPIFSCLEKDKVNVEIL   69 (209)
T ss_pred             cCcHHHHHHHhCcHHHHHHHHHh---hhc----------------------------cCccCCCHHHHHHHcCCCCHHHH
Confidence            57999999999999999999864   222                            2456789999999854  89999


Q ss_pred             HHHHhCCCCCcccC-CCCChHHHHHHHc---CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHH--cCCHHHHHHHHhCCC
Q 013643          294 DALLKHNVDINAVD-KDGLTALHKAIIG---KKQAVTNYLLRESANPFVVDEDGATLLHYAVQ--TASSPAIKILLLYNV  367 (439)
Q Consensus       294 k~LL~~gadin~~d-~~g~t~L~~Aa~~---g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~--~g~~~iV~~Ll~~ga  367 (439)
                      ++|+++|++++.++ ..|+||||+|+..   ++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|+++|+
T Consensus        70 ~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~ga  149 (209)
T PHA02859         70 KFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGV  149 (209)
T ss_pred             HHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCC
Confidence            99999999999987 4899999998864   47999999999999999999999999999876  468999999999999


Q ss_pred             CCccCCCCCCcHHHH-HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 013643          368 DINLQDNDGWTPLHL-AVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG  420 (439)
Q Consensus       368 din~~d~~G~TpLh~-A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g  420 (439)
                      +++.+|..|.||||. |+..++.+++++|+++|+|++.+|..|.|||++|+..+
T Consensus       150 din~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        150 SFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            999999999999995 56788999999999999999999999999999999765

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.8e-29  Score=252.55  Aligned_cols=205  Identities=20%  Similarity=0.131  Sum_probs=178.4

Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCcCC-hHHHHHHHhhcCCCcc------cCCCCCchHHHHHHH--cCCHHHHHHHHhCC
Q 013643          230 DVSEFFNSGNYDPPDKKSDGPRRKLF-TKEEKVLLNKKLPHLA------TATSKKWLPLHSLAA--SGEFYFVDALLKHN  300 (439)
Q Consensus       230 eiv~~Ll~~ga~~n~~~~~~g~t~L~-~~~~~~lL~~~~~d~~------~~d~~g~tpLh~Aa~--~g~~eivk~LL~~g  300 (439)
                      -+-+|++++|+++|... ..|..+.. ..+++++|+.+|++++      ..+..++|+||+|+.  .|+.++|++|+++|
T Consensus        63 ~~~~~~~~~~~~i~~~~-~~~~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~G  141 (437)
T PHA02795         63 VLYDYFRIHRDNIDQYI-VDRLFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHG  141 (437)
T ss_pred             HHHHHHHHcCcchhhhh-hhhHHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCC
Confidence            45688888888888777 55533333 7888889999888888      677889999999999  89999999999999


Q ss_pred             CCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCC
Q 013643          301 VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD------EDGATLLHYAVQTASSPAIKILLLYNVDINLQDN  374 (439)
Q Consensus       301 adin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d------~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~  374 (439)
                      |+++..  .+.||||.|+..++.+++++|+++|++.+...      ..+.|++|.|+..++.+++++|+.+|+++|.+|.
T Consensus       142 ADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~  219 (437)
T PHA02795        142 AVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDA  219 (437)
T ss_pred             CCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCC
Confidence            999874  45899999999999999999999998543222      3478999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCc----chHHHHHHHHhcCCC
Q 013643          375 DGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD----TRTFGMIKLLKQLPT  437 (439)
Q Consensus       375 ~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~----~~~~eiik~L~~~~~  437 (439)
                      .|+||||+|+..|+.+++++|+++|||++.+|..|.||||+|+..|+.    ..-.+|+++|++.+.
T Consensus       220 ~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        220 GGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999952    122589999988764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.1e-28  Score=258.65  Aligned_cols=219  Identities=15%  Similarity=0.157  Sum_probs=194.0

Q ss_pred             CCCCcHHH--HHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC-----------hHHHHHHHhhcCCCcccCCCCCchH
Q 013643          214 VPPKNPKW--AVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF-----------TKEEKVLLNKKLPHLATATSKKWLP  280 (439)
Q Consensus       214 ~~g~t~l~--~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~-----------~~~~~~lL~~~~~d~~~~d~~g~tp  280 (439)
                      ..+.|+++  .+...+..+++++|+++|+++|..+ ..|.|||+           ..++.++|+++|++++..+..|+||
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d-~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~Tp  112 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLD-NEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETP  112 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCC-CCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcH
Confidence            45667654  3344458999999999999999999 89999997           2688999999999999999999999


Q ss_pred             HHHHHHcC---CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCC---HHHHHHHHHCCCCCCccC-CCCCCHHHHHHHc
Q 013643          281 LHSLAASG---EFYFVDALLKHNVDINAVDKDGLTALHKAIIGKK---QAVTNYLLRESANPFVVD-EDGATLLHYAVQT  353 (439)
Q Consensus       281 Lh~Aa~~g---~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~---~~iv~~LL~~ga~v~~~d-~~g~TpLh~A~~~  353 (439)
                      ||+|+..+   +.+++++|+++|++++..|..|.||||+|+..++   .+++++|+++|++++.++ ..|.||||+++..
T Consensus       113 Lh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~  192 (489)
T PHA02798        113 LYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKY  192 (489)
T ss_pred             HHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHh
Confidence            99999986   7899999999999999999999999999999988   999999999999999875 5789999998765


Q ss_pred             ----CCHHHHHHHHhCCCCCccCCCCCCcHHH-------HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCc
Q 013643          354 ----ASSPAIKILLLYNVDINLQDNDGWTPLH-------LAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD  422 (439)
Q Consensus       354 ----g~~~iV~~Ll~~gadin~~d~~G~TpLh-------~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~  422 (439)
                          ++.+++++|+++|++++..+..|.|+++       ++...++.+++.+|+. |+|++.+|..|.||||+|+..|+.
T Consensus       193 ~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~  271 (489)
T PHA02798        193 NIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNR  271 (489)
T ss_pred             ccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcH
Confidence                4799999999999999999999999877       2445567889988766 699999999999999999999995


Q ss_pred             chHHHHHHHHhcCCCC
Q 013643          423 TRTFGMIKLLKQLPTS  438 (439)
Q Consensus       423 ~~~~eiik~L~~~~~~  438 (439)
                          +++++|++.+.+
T Consensus       272 ----~~v~~LL~~GAd  283 (489)
T PHA02798        272 ----KIFEYLLQLGGD  283 (489)
T ss_pred             ----HHHHHHHHcCCc
Confidence                999999987753

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1e-28  Score=258.25  Aligned_cols=184  Identities=31%  Similarity=0.348  Sum_probs=168.6

Q ss_pred             CCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCH-------------------------------
Q 013643          248 DGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEF-------------------------------  290 (439)
Q Consensus       248 ~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~-------------------------------  290 (439)
                      ..+.||||      +.+++++|++.|++++..+..|+||||+||..|+.                               
T Consensus        35 ~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~  114 (477)
T PHA02878         35 LIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNV  114 (477)
T ss_pred             ccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCH
Confidence            67889999      88999999999999999999999999999987543                               


Q ss_pred             ---------------------------------HHHHHHHhCCCCCcccCCC-CChHHHHHHHcCCHHHHHHHHHCCCCC
Q 013643          291 ---------------------------------YFVDALLKHNVDINAVDKD-GLTALHKAIIGKKQAVTNYLLRESANP  336 (439)
Q Consensus       291 ---------------------------------eivk~LL~~gadin~~d~~-g~t~L~~Aa~~g~~~iv~~LL~~ga~v  336 (439)
                                                       +++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|+++
T Consensus       115 ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~  194 (477)
T PHA02878        115 EIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV  194 (477)
T ss_pred             HHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC
Confidence                                             2677788889999999888 999999999999999999999999999


Q ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCCCC-CCCCHHH
Q 013643          337 FVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQA-RRTDIVKLLLIKGADKTLKNR-DGLTPLD  414 (439)
Q Consensus       337 ~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~-g~~eiv~~LL~~Gadi~~~d~-~G~TpL~  414 (439)
                      +.++..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+.. ++.+++++|+++|+|++.++. .|.||||
T Consensus       195 n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh  274 (477)
T PHA02878        195 NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALH  274 (477)
T ss_pred             CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999976 789999999999999999886 7999999


Q ss_pred             HHHHcCCcchHHHHHHHHhcCCC
Q 013643          415 LCLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       415 ~A~~~g~~~~~~eiik~L~~~~~  437 (439)
                      +|  .++.    +++++|++.+.
T Consensus       275 ~A--~~~~----~~v~~Ll~~ga  291 (477)
T PHA02878        275 SS--IKSE----RKLKLLLEYGA  291 (477)
T ss_pred             HH--ccCH----HHHHHHHHCCC
Confidence            99  3443    78999998765

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=263.71  Aligned_cols=225  Identities=16%  Similarity=0.156  Sum_probs=187.1

Q ss_pred             CCCCCCCCCcHHHHHHhc---CcHHHHHHHHhCCCCCCCCCCCCCCCcCC------h----HHHHHHHhhcCCCcccCCC
Q 013643          209 TCTQRVPPKNPKWAVYGR---GLDDVSEFFNSGNYDPPDKKSDGPRRKLF------T----KEEKVLLNKKLPHLATATS  275 (439)
Q Consensus       209 ~~~~~~~g~t~l~~A~~~---g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~----~~~~~lL~~~~~d~~~~d~  275 (439)
                      ....+..|+||||+|+..   |+.+++++|++.|++++..+ ..|.|||+      .    .+++++|+..+...+..+ 
T Consensus        25 ~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~-~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~-  102 (661)
T PHA02917         25 NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKN-WRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND-  102 (661)
T ss_pred             ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccC-CCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC-
Confidence            344477899999997655   88999999999999999888 89999999      1    345667776554444433 


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHH--HcCCHHHHHHHHHCCCCCCccCC---CC-------
Q 013643          276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI--IGKKQAVTNYLLRESANPFVVDE---DG-------  343 (439)
Q Consensus       276 ~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa--~~g~~~iv~~LL~~ga~v~~~d~---~g-------  343 (439)
                       ..+++++|+..|+.++|++|+++|+++|..|..|+||||.|+  ..|+.+++++|+++|++++.+|.   .|       
T Consensus       103 -~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~  181 (661)
T PHA02917        103 -FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQ  181 (661)
T ss_pred             -cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccc
Confidence             236788899999999999999999999999999999999654  57899999999999999986553   34       


Q ss_pred             ----CCHHHHHHH-----------cCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCH--HHHHHHHHcCCCCC---
Q 013643          344 ----ATLLHYAVQ-----------TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRT--DIVKLLLIKGADKT---  403 (439)
Q Consensus       344 ----~TpLh~A~~-----------~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~--eiv~~LL~~Gadi~---  403 (439)
                          .||||+|+.           .++.++|++|+++|+|+|.+|.+|+||||+|+..|+.  ++|++|++ |+|++   
T Consensus       182 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~  260 (661)
T PHA02917        182 PRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYS  260 (661)
T ss_pred             ccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccc
Confidence                599999986           4689999999999999999999999999999999985  79999974 98876   


Q ss_pred             -CCCCCCCCHHHHHHHcCCc-----chHHHHHHHHhcCCC
Q 013643          404 -LKNRDGLTPLDLCLYSGRD-----TRTFGMIKLLKQLPT  437 (439)
Q Consensus       404 -~~d~~G~TpL~~A~~~g~~-----~~~~eiik~L~~~~~  437 (439)
                       ..|..|.+|+++|++.++.     ....+++++|++.+.
T Consensus       261 ~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga  300 (661)
T PHA02917        261 YIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGK  300 (661)
T ss_pred             cccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCC
Confidence             4666788999999964321     234699999999875

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=8.9e-29  Score=256.03  Aligned_cols=225  Identities=24%  Similarity=0.267  Sum_probs=204.6

Q ss_pred             CCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHH
Q 013643          209 TCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLH  282 (439)
Q Consensus       209 ~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh  282 (439)
                      ..-.+..+.+|+|.|+..|..++.+.|++.|+|+|..+ ..|.||||      ..+..+.|+..++++...+.+|.+|+|
T Consensus       114 ~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~d-e~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH  192 (929)
T KOG0510|consen  114 TPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLED-ENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIH  192 (929)
T ss_pred             CChhhhhccCchhhccccchHHHHHHHHHhcCCccccc-cCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHH
Confidence            34455678899999999999999999999999999999 99999999      666779999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHh-----CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC---------------CCccCCC
Q 013643          283 SLAASGEFYFVDALLK-----HNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN---------------PFVVDED  342 (439)
Q Consensus       283 ~Aa~~g~~eivk~LL~-----~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~---------------v~~~d~~  342 (439)
                      .|+++|..++++.++.     ++..+|..+..+.+|||.|+..|+.++++..|++|..               ++..|++
T Consensus       193 ~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~d  272 (929)
T KOG0510|consen  193 EAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDND  272 (929)
T ss_pred             HHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhccccc
Confidence            9999999999999997     6788999999999999999999999999999998763               3446889


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-cC-CCCCCCCCCCCCHHHHHHHcC
Q 013643          343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI-KG-ADKTLKNRDGLTPLDLCLYSG  420 (439)
Q Consensus       343 g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~-~G-adi~~~d~~G~TpL~~A~~~g  420 (439)
                      |.||||+||..|+.++++.|+..|++++.++.++.||||.|+..|+.++|+-||+ .| ...+..|..|+||||+|+..|
T Consensus       273 g~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~g  352 (929)
T KOG0510|consen  273 GCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSG  352 (929)
T ss_pred             CCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcC
Confidence            9999999999999999999999999999999999999999999999999999998 54 567888999999999999999


Q ss_pred             CcchHHHHHHHHhcCCCC
Q 013643          421 RDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       421 ~~~~~~eiik~L~~~~~~  438 (439)
                      |.    .++++|++.++.
T Consensus       353 H~----~v~qlLl~~GA~  366 (929)
T KOG0510|consen  353 HD----RVVQLLLNKGAL  366 (929)
T ss_pred             HH----HHHHHHHhcChh
Confidence            96    899999987764

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=2.7e-28  Score=248.27  Aligned_cols=175  Identities=30%  Similarity=0.348  Sum_probs=163.0

Q ss_pred             hHHHHHHHhhc-CCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHHCC
Q 013643          256 TKEEKVLLNKK-LPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVD-KDGLTALHKAIIGKKQAVTNYLLRES  333 (439)
Q Consensus       256 ~~~~~~lL~~~-~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d-~~g~t~L~~Aa~~g~~~iv~~LL~~g  333 (439)
                      ..+.++-+++. +.+++..|.+|.|+||+||.+++++++++|+++|+++|... ..+.||||+||++|+..+|.+|+++|
T Consensus        56 ~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhG  135 (600)
T KOG0509|consen   56 ELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHG  135 (600)
T ss_pred             hHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcC
Confidence            34555556655 99999999999999999999999999999999999999988 56889999999999999999999999


Q ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCH
Q 013643          334 ANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKN-RDGLTP  412 (439)
Q Consensus       334 a~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d-~~G~Tp  412 (439)
                      |+++.+|.+|.|+||+|++.|+..+|-+|+.+|+|+|.+|.+|+||||||+.+|+...++.||..|+.+..+| ..|.||
T Consensus       136 Adpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~Tp  215 (600)
T KOG0509|consen  136 ADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTP  215 (600)
T ss_pred             CCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCch
Confidence            9999999999999999999999999999999999999999999999999999999988999999999999998 999999


Q ss_pred             HHHHHHcCCcchHHHHHHHHhc
Q 013643          413 LDLCLYSGRDTRTFGMIKLLKQ  434 (439)
Q Consensus       413 L~~A~~~g~~~~~~eiik~L~~  434 (439)
                      ||+|+..|+.    ..+++|.+
T Consensus       216 LHwa~~~gN~----~~v~Ll~~  233 (600)
T KOG0509|consen  216 LHWAVVGGNL----TAVKLLLE  233 (600)
T ss_pred             HHHHHhcCCc----ceEehhhh
Confidence            9999999996    66665544

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.4e-27  Score=248.84  Aligned_cols=209  Identities=18%  Similarity=0.184  Sum_probs=182.0

Q ss_pred             HhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC--------hHHHHHHHhh------------------------------
Q 013643          224 YGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF--------TKEEKVLLNK------------------------------  265 (439)
Q Consensus       224 ~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~--------~~~~~~lL~~------------------------------  265 (439)
                      ...+..|++++|+++|+++|.++ ..|.||||        +.+++++|++                              
T Consensus       210 ~~~n~~eiv~lLIs~GadIN~kd-~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (672)
T PHA02730        210 SESLSKDVIKCLIDNNVSIHGRD-EGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRV  288 (672)
T ss_pred             hhccCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhc
Confidence            46678999999999999999999 99999997        2789999999                              


Q ss_pred             --cCCCccc--------------------CCCCCch---------------------HHHHHHHcC---CHHHHHHHHhC
Q 013643          266 --KLPHLAT--------------------ATSKKWL---------------------PLHSLAASG---EFYFVDALLKH  299 (439)
Q Consensus       266 --~~~d~~~--------------------~d~~g~t---------------------pLh~Aa~~g---~~eivk~LL~~  299 (439)
                        +|+|...                    .+..|.+                     .||.-..++   +.+++++|+++
T Consensus       289 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~  368 (672)
T PHA02730        289 TPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDN  368 (672)
T ss_pred             ccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHC
Confidence              7888866                    4556654                     677777766   58999999999


Q ss_pred             CCCCcccCCCCChHHHHHHHcCC----HHHHHHHHHCCC--CCCccCCCCCCHHHH---HHHcC---------CHHHHHH
Q 013643          300 NVDINAVDKDGLTALHKAIIGKK----QAVTNYLLRESA--NPFVVDEDGATLLHY---AVQTA---------SSPAIKI  361 (439)
Q Consensus       300 gadin~~d~~g~t~L~~Aa~~g~----~~iv~~LL~~ga--~v~~~d~~g~TpLh~---A~~~g---------~~~iV~~  361 (439)
                      ||++|.. ..|.||||+|+..++    .+++++|+++|+  +++.+|..|.||||.   |...+         ..+++++
T Consensus       369 GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~  447 (672)
T PHA02730        369 GATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDI  447 (672)
T ss_pred             CCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHH
Confidence            9999985 789999999998875    899999999998  688899999999994   33332         2357999


Q ss_pred             HHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHc--CCcchHHHHHHHHhcCCCC
Q 013643          362 LLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNR-DGLTPLDLCLYS--GRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       362 Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~-~G~TpL~~A~~~--g~~~~~~eiik~L~~~~~~  438 (439)
                      |+.+|+|+|.+|..|+||||+|+..++.+++++|+++||+++.+|. .|.|||++|+..  ++    .+|+++|++++..
T Consensus       448 LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~----~eIv~~LLs~ga~  523 (672)
T PHA02730        448 LSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENK----TKLVDLLLSYHPT  523 (672)
T ss_pred             HHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCc----HHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999997 599999999984  56    4899999998754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-27  Score=234.40  Aligned_cols=152  Identities=22%  Similarity=0.200  Sum_probs=145.0

Q ss_pred             CCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHH
Q 013643          210 CTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHS  283 (439)
Q Consensus       210 ~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~  283 (439)
                      .++...|-+|||+|+..||.++|+.|++.|+++|... ....|||.      ..+++++|.++++|++..+..|.|+||.
T Consensus        78 Dge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT-~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmI  156 (615)
T KOG0508|consen   78 DGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTT-RTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMI  156 (615)
T ss_pred             CCcccCCCchhhHHhccCcHHHHHHHHHhcCcccccc-ccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEe
Confidence            4677889999999999999999999999999999887 77789998      8899999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Q 013643          284 LAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL  363 (439)
Q Consensus       284 Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll  363 (439)
                      ||..|+.+++++|++.|+|+|.++..|.|+||.|+++|+.+++++|+.+|+.++ +|..|.|||..|+..|+.++|++|+
T Consensus       157 a~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  157 ACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             eeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999887 6777999999999999999999998

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=6.3e-27  Score=236.48  Aligned_cols=201  Identities=13%  Similarity=0.040  Sum_probs=174.0

Q ss_pred             hHHHhhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCC------CCCCCCCCCcCC--------hHHHHHHHh
Q 013643          199 FQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPP------DKKSDGPRRKLF--------TKEEKVLLN  264 (439)
Q Consensus       199 ~~~~l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n------~~~~~~g~t~L~--------~~~~~~lL~  264 (439)
                      +++++.+...    ..+..+---.|+..+..|++++|+++|++++      ..+ ..++|+||        ..+++++|+
T Consensus        64 ~~~~~~~~~~----~i~~~~~~~~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~-~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         64 LYDYFRIHRD----NIDQYIVDRLFAYITYKDIISALVSKNYMEDIFSIIIKNC-NSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHHHcCc----chhhhhhhhHHhhcchHHHHHHHHhcccccchhhhhhhcc-ccccHHHHHHHHhcCCCHHHHHHHH
Confidence            4555555532    2222233337888999999999999999998      666 78999999        789999999


Q ss_pred             hcCCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccC------CCCChHHHHHHHcCCHHHHHHHHHCCCCCCc
Q 013643          265 KKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVD------KDGLTALHKAIIGKKQAVTNYLLRESANPFV  338 (439)
Q Consensus       265 ~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d------~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~  338 (439)
                      .+|++++..  .+.||+|.|+..|+.+++++|+++|++.+...      ..+.+++|.|+..++.+++++|+++|+++|.
T Consensus       139 ~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~  216 (437)
T PHA02795        139 DHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQ  216 (437)
T ss_pred             HCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCc
Confidence            999999874  45799999999999999999999998543222      3477999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCC--------HHHHHHHHHcCCCCCCCC
Q 013643          339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR--------TDIVKLLLIKGADKTLKN  406 (439)
Q Consensus       339 ~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~--------~eiv~~LL~~Gadi~~~d  406 (439)
                      +|..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+        .+++++|+++|++++..+
T Consensus       217 kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        217 LDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchh
Confidence            99999999999999999999999999999999999999999999999984        699999999999998754

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.95  E-value=3.4e-28  Score=265.43  Aligned_cols=223  Identities=30%  Similarity=0.335  Sum_probs=170.1

Q ss_pred             CCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------h---------------------------
Q 013643          210 CTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------T---------------------------  256 (439)
Q Consensus       210 ~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~---------------------------  256 (439)
                      ......+.+|+|.|+..|..+++++++..|++++... ..|.||+|      +                           
T Consensus       368 ~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~g-k~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhv  446 (1143)
T KOG4177|consen  368 RQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAG-KNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHV  446 (1143)
T ss_pred             CcccccCCcchhhhcccCchhHHHhhhhccCCcccCC-CCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhh
Confidence            3444455566666666666666666666666655555 55555555      2                           


Q ss_pred             -------HHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 013643          257 -------KEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYL  329 (439)
Q Consensus       257 -------~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~L  329 (439)
                             .+....+...+.+++.....|+||||.|+..|+.++++.|++.++..+.....+.+++|.|+..+...+++.+
T Consensus       447 aa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l  526 (1143)
T KOG4177|consen  447 AAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKIL  526 (1143)
T ss_pred             hhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHH
Confidence                   3344445556666666666666666666666666666666666655555555666666666666666667777


Q ss_pred             HHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 013643          330 LRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG  409 (439)
Q Consensus       330 L~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G  409 (439)
                      +++|++++.++..|.||||.||..|+..+|++|+++|+|++.++..|+||||.|+..|+.+|+.+|+++||++|..|.+|
T Consensus       527 ~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g  606 (1143)
T KOG4177|consen  527 LEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDG  606 (1143)
T ss_pred             hhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccC
Confidence            77788888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643          410 LTPLDLCLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       410 ~TpL~~A~~~g~~~~~~eiik~L~~~~~  437 (439)
                      .|||++|+..|+.    .++++|+...+
T Consensus       607 ~TpL~iA~~lg~~----~~~k~l~~~~~  630 (1143)
T KOG4177|consen  607 FTPLHIAVRLGYL----SVVKLLKVVTA  630 (1143)
T ss_pred             cchhHHHHHhccc----chhhHHHhccC
Confidence            9999999999996    78888776543

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=6.6e-27  Score=246.68  Aligned_cols=219  Identities=15%  Similarity=0.082  Sum_probs=184.5

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHhCCCCCCC-------CCCCCCCCcCC------------hHHHHHHHhhcCCCcccCCC
Q 013643          215 PPKNPKWAVYGRGLDDVSEFFNSGNYDPPD-------KKSDGPRRKLF------------TKEEKVLLNKKLPHLATATS  275 (439)
Q Consensus       215 ~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~-------~~~~~g~t~L~------------~~~~~~lL~~~~~d~~~~d~  275 (439)
                      .|.+|++.++..++.++|++|+++|++++.       .+...+.|.|+            ..+++++|+++|++++..|.
T Consensus       154 ~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~  233 (672)
T PHA02730        154 LGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDE  233 (672)
T ss_pred             cchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCC
Confidence            578999999999999999999999999962       23122323333            78999999999999999999


Q ss_pred             CCchHHHH--HHHcCCHHHHHHHHh--------------------------------CCCCCcc----------------
Q 013643          276 KKWLPLHS--LAASGEFYFVDALLK--------------------------------HNVDINA----------------  305 (439)
Q Consensus       276 ~g~tpLh~--Aa~~g~~eivk~LL~--------------------------------~gadin~----------------  305 (439)
                      .|+||||+  |+..|+.|++++|++                                +|+|+..                
T Consensus       234 ~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  313 (672)
T PHA02730        234 GGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMR  313 (672)
T ss_pred             CCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhh
Confidence            99999995  555678999999999                                7888755                


Q ss_pred             ----cCCCCCh---------------------HHHHHHHcC---CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC--
Q 013643          306 ----VDKDGLT---------------------ALHKAIIGK---KQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS--  355 (439)
Q Consensus       306 ----~d~~g~t---------------------~L~~Aa~~g---~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~--  355 (439)
                          .+..|.+                     .||.-...+   +.+++++|+++|+++|.. ..|.||||+|+..++  
T Consensus       314 ~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~  392 (672)
T PHA02730        314 SITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNI  392 (672)
T ss_pred             ccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCc
Confidence                4455544                     677777766   689999999999999975 799999999998875  


Q ss_pred             --HHHHHHHHhCCC--CCccCCCCCCcHHHH---HHHcC---------CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Q 013643          356 --SPAIKILLLYNV--DINLQDNDGWTPLHL---AVQAR---------RTDIVKLLLIKGADKTLKNRDGLTPLDLCLYS  419 (439)
Q Consensus       356 --~~iV~~Ll~~ga--din~~d~~G~TpLh~---A~~~g---------~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~  419 (439)
                        .+++++|+.+|+  ++|.+|..|+||||.   |...+         ..+++++|+.+|||++.+|..|.||||+|+..
T Consensus       393 i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~  472 (672)
T PHA02730        393 VDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDV  472 (672)
T ss_pred             chHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHh
Confidence              899999999997  699999999999994   33232         23579999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHhcCCCC
Q 013643          420 GRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       420 g~~~~~~eiik~L~~~~~~  438 (439)
                      ++.    +++++|++++.+
T Consensus       473 ~~~----eive~LI~~GAd  487 (672)
T PHA02730        473 NNI----QFARRLLEYGAS  487 (672)
T ss_pred             CCH----HHHHHHHHCCCC
Confidence            995    999999998763

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=8.6e-27  Score=250.48  Aligned_cols=201  Identities=17%  Similarity=0.110  Sum_probs=173.9

Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCcCCh---------HHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHH----HHHH
Q 013643          229 DDVSEFFNSGNYDPPDKKSDGPRRKLFT---------KEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFY----FVDA  295 (439)
Q Consensus       229 ~eiv~~Ll~~ga~~n~~~~~~g~t~L~~---------~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~e----ivk~  295 (439)
                      .+.++.|+..|..++..+ ..|+||||.         .+++++|++.|++++..+..|+||||+|+..|+.+    +++.
T Consensus        12 ~~~~~~l~~~~~~~~~~d-~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~   90 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRN-QFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMA   90 (661)
T ss_pred             HHHHHHHHhccCcccccC-CCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHH
Confidence            467788888999888888 899999993         68999999999999999999999999999999854    5678


Q ss_pred             HHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHH--HHcCCHHHHHHHHhCCCCCccCC
Q 013643          296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYA--VQTASSPAIKILLLYNVDINLQD  373 (439)
Q Consensus       296 LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A--~~~g~~~iV~~Ll~~gadin~~d  373 (439)
                      |++.+...+..+  ..+++++|+.+|+.++|++|+++|++++.+|..|.||||.|  +..|+.++|++|+++|+++|..|
T Consensus        91 Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d  168 (661)
T PHA02917         91 LLEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYED  168 (661)
T ss_pred             HHhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccc
Confidence            888754444433  23678889999999999999999999999999999999964  45789999999999999998765


Q ss_pred             C---CC-----------CcHHHHHHH-----------cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHH
Q 013643          374 N---DG-----------WTPLHLAVQ-----------ARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGM  428 (439)
Q Consensus       374 ~---~G-----------~TpLh~A~~-----------~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~ei  428 (439)
                      .   .|           .||||+|+.           .++.++|++|+++|||++.+|.+|.||||+|+..|+..  .+|
T Consensus       169 ~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~--~ei  246 (661)
T PHA02917        169 EDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHID--IDI  246 (661)
T ss_pred             cccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCc--HHH
Confidence            3   34           599999986           46899999999999999999999999999999999842  378


Q ss_pred             HHHHhc
Q 013643          429 IKLLKQ  434 (439)
Q Consensus       429 ik~L~~  434 (439)
                      +++|++
T Consensus       247 vk~Li~  252 (661)
T PHA02917        247 VKLLMK  252 (661)
T ss_pred             HHHHHh
Confidence            998876

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=5.5e-26  Score=237.46  Aligned_cols=126  Identities=17%  Similarity=0.266  Sum_probs=101.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCC--CCHHHHHHHcCCH---HHHHHHHhCCCCCccCCCCCCcHHHHHHHc
Q 013643          312 TALHKAIIGKKQAVTNYLLRESANPFVVDEDG--ATLLHYAVQTASS---PAIKILLLYNVDINLQDNDGWTPLHLAVQA  386 (439)
Q Consensus       312 t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g--~TpLh~A~~~g~~---~iV~~Ll~~gadin~~d~~G~TpLh~A~~~  386 (439)
                      ..++.||..|+.++|++|+++|++++.+|..|  .||||+|+.....   +++++|+.+|+|+|.+|..|+||||+|+..
T Consensus       341 n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~  420 (631)
T PHA02792        341 NKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIES  420 (631)
T ss_pred             hHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHc
Confidence            44566677888899999999999998888764  5899987776654   357888999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH--cCCcch----HHHHHHHHhcCCC
Q 013643          387 RRTDIVKLLLIKGADKTLKNRDGLTPLDLCLY--SGRDTR----TFGMIKLLKQLPT  437 (439)
Q Consensus       387 g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~--~g~~~~----~~eiik~L~~~~~  437 (439)
                      ++.+++++|+++|+|++.+|..|.|||++|+.  .+....    ..++++.|++...
T Consensus       421 ~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p  477 (631)
T PHA02792        421 HSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLP  477 (631)
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999976  332211    2467777777653

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=8.4e-27  Score=254.56  Aligned_cols=237  Identities=27%  Similarity=0.313  Sum_probs=212.3

Q ss_pred             cchHHHhhc-CCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCC
Q 013643          197 CGFQDFVNS-SSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPH  269 (439)
Q Consensus       197 ~~~~~~l~~-~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d  269 (439)
                      ..+.+.... .....-.+..|.+++|.++..++.++..+|...+..-.... ..|.+|++      ..+.++++...+.+
T Consensus       321 ~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~-~k~~~pl~la~~~g~~~~v~Lll~~ga~  399 (1143)
T KOG4177|consen  321 EEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAE-EKGFTPLHLAVKSGRVSVVELLLEAGAD  399 (1143)
T ss_pred             HHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCccc-ccCCcchhhhcccCchhHHHhhhhccCC
Confidence            334444333 33345677889999999999999999999998888888777 89999999      78889999999999


Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcC-CHHHHHHHHHCCCCCCccCCCCCCHHH
Q 013643          270 LATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGK-KQAVTNYLLRESANPFVVDEDGATLLH  348 (439)
Q Consensus       270 ~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g-~~~iv~~LL~~ga~v~~~d~~g~TpLh  348 (439)
                      ++..+..|.||||.|+..++..+++.++++|++++..+..|.|++|.|+..| ..++...+++.|+++|.....|.||||
T Consensus       400 ~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lh  479 (1143)
T KOG4177|consen  400 PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLH  479 (1143)
T ss_pred             cccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchh
Confidence            9999999999999999999999999999999999999999999999999999 788888899999999999999999999


Q ss_pred             HHHHcCCHHHHHHHH---------------------------------hCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q 013643          349 YAVQTASSPAIKILL---------------------------------LYNVDINLQDNDGWTPLHLAVQARRTDIVKLL  395 (439)
Q Consensus       349 ~A~~~g~~~iV~~Ll---------------------------------~~gadin~~d~~G~TpLh~A~~~g~~eiv~~L  395 (439)
                      .|++.|+.+++..|+                                 ++|++++.++..|.||||+|+..|+.++|++|
T Consensus       480 laaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfL  559 (1143)
T KOG4177|consen  480 LAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFL  559 (1143)
T ss_pred             hhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHh
Confidence            999999888887777                                 45778888899999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643          396 LIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       396 L~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                      +++|||++.+++.|+||||.|+..|+.    +|+.+|.+++.+
T Consensus       560 Le~gAdv~ak~~~G~TPLH~Aa~~G~~----~i~~LLlk~GA~  598 (1143)
T KOG4177|consen  560 LEHGADVNAKDKLGYTPLHQAAQQGHN----DIAELLLKHGAS  598 (1143)
T ss_pred             hhCCccccccCCCCCChhhHHHHcChH----HHHHHHHHcCCC
Confidence            999999999999999999999999985    999999998764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2e-25  Score=208.34  Aligned_cols=156  Identities=19%  Similarity=0.242  Sum_probs=139.7

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcC--CHHHHHHHHHCCCCCCccC-CCCCCHHHHHH
Q 013643          275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGK--KQAVTNYLLRESANPFVVD-EDGATLLHYAV  351 (439)
Q Consensus       275 ~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g--~~~iv~~LL~~ga~v~~~d-~~g~TpLh~A~  351 (439)
                      +.++||||+|+..|+.++|+.|++.   ++..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+|+
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            4568999999999999999999986   4667889999999999854  8999999999999999987 48999999987


Q ss_pred             Hc---CCHHHHHHHHhCCCCCccCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCCHHHH-HHHcCCcchH
Q 013643          352 QT---ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQ--ARRTDIVKLLLIKGADKTLKNRDGLTPLDL-CLYSGRDTRT  425 (439)
Q Consensus       352 ~~---g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~--~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~-A~~~g~~~~~  425 (439)
                      ..   ++.+++++|+++|+++|.+|..|+||||+|+.  .++.+++++|+++|+|++.+|..|.||||. |+..++.   
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~---  172 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDK---  172 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCH---
Confidence            64   47999999999999999999999999999886  468999999999999999999999999996 5666774   


Q ss_pred             HHHHHHHhcCCC
Q 013643          426 FGMIKLLKQLPT  437 (439)
Q Consensus       426 ~eiik~L~~~~~  437 (439)
                       +++++|++.+.
T Consensus       173 -~iv~~Ll~~Ga  183 (209)
T PHA02859        173 -KIFDFLTSLGI  183 (209)
T ss_pred             -HHHHHHHHcCC
Confidence             99999998764

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=1.3e-24  Score=240.77  Aligned_cols=177  Identities=28%  Similarity=0.327  Sum_probs=162.3

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHH
Q 013643          215 PPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVD  294 (439)
Q Consensus       215 ~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk  294 (439)
                      .+.++++.|+..|+.++++.|++.|+++|..+                            ..|.||||+||..|+.++++
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d----------------------------~~G~TpLh~Aa~~g~~~~v~  575 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPDIGD----------------------------SKGRTPLHIAASKGYEDCVL  575 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCC----------------------------CCCCCHHHHHHHcChHHHHH
Confidence            45678999999999999999999998887654                            56779999999999999999


Q ss_pred             HHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCC
Q 013643          295 ALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDN  374 (439)
Q Consensus       295 ~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~  374 (439)
                      +|+++|+++|.+|..|.||||+|+..|+.+++++|++.++..+  ...|.++||.|+.+|+.+++++|+++|+|+|.+|.
T Consensus       576 ~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~  653 (823)
T PLN03192        576 VLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDH  653 (823)
T ss_pred             HHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence            9999999999999999999999999999999999998877654  34577999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC-CCHHHHHHHcCC
Q 013643          375 DGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG-LTPLDLCLYSGR  421 (439)
Q Consensus       375 ~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G-~TpL~~A~~~g~  421 (439)
                      +|+||||+|+..|+.+++++|+++|||++..|..| .||++++.....
T Consensus       654 ~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        654 QGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQK  701 (823)
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999888 999988866543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=3.4e-25  Score=198.68  Aligned_cols=182  Identities=25%  Similarity=0.270  Sum_probs=140.5

Q ss_pred             CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCH
Q 013643          211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEF  290 (439)
Q Consensus       211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~  290 (439)
                      ..+..|+.+++.++-.++.+.+..++.+|+..|..+                            ..+|+|+.+++...++
T Consensus        91 ~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs----------------------------~~p~s~~slsVhql~L  142 (296)
T KOG0502|consen   91 ETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVS----------------------------LMPWSPLSLSVHQLHL  142 (296)
T ss_pred             CCCchhhhhhhhcCCCCCcceeeeeecccccCCccc----------------------------cccCChhhHHHHHHHH
Confidence            344457777777777777777666666666665554                            4566777777777777


Q ss_pred             HHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCc
Q 013643          291 YFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDIN  370 (439)
Q Consensus       291 eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin  370 (439)
                      +.+..+.+.  .+|..|..|.|||.||+..|++.+|++||+.|++++...+...++|++|+..|..++|++|+..+.|+|
T Consensus       143 ~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVN  220 (296)
T KOG0502|consen  143 DVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVN  220 (296)
T ss_pred             HHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc
Confidence            766665554  456778888888888888888888888888888888777777888888888888888888888888888


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCc
Q 013643          371 LQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD  422 (439)
Q Consensus       371 ~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~  422 (439)
                      ..|.+|-|||-+|++-++.+||+.|++.|||+++.+..|.+++++|+..|..
T Consensus       221 vyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  221 VYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             eeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH
Confidence            8888888888888888888888888888888888888888888888888875

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=1e-24  Score=195.62  Aligned_cols=162  Identities=23%  Similarity=0.243  Sum_probs=149.9

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHH
Q 013643          270 LATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHY  349 (439)
Q Consensus       270 ~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~  349 (439)
                      +...+..||.+++.|+-.|+.+.+..++.+|+..|..+.-+++|+.+++...+++.+..+..+  .+|..|..|.|||+|
T Consensus        89 ~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiW  166 (296)
T KOG0502|consen   89 IDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIW  166 (296)
T ss_pred             CCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHH
Confidence            445677899999999999999999999999999999999999999999999999888777664  467799999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHH
Q 013643          350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMI  429 (439)
Q Consensus       350 A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eii  429 (439)
                      |+..|++++|++|++.|+|++.......|+|.+|++.|+.+||++||+++.|+|..|.+|.|||-||++.+|.    +++
T Consensus       167 Aaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhv----kcv  242 (296)
T KOG0502|consen  167 AAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHV----KCV  242 (296)
T ss_pred             HHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChH----HHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999996    888


Q ss_pred             HHHhcCCC
Q 013643          430 KLLKQLPT  437 (439)
Q Consensus       430 k~L~~~~~  437 (439)
                      +-|++.+.
T Consensus       243 e~Ll~sGA  250 (296)
T KOG0502|consen  243 ESLLNSGA  250 (296)
T ss_pred             HHHHhcCC
Confidence            88887654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=2.4e-23  Score=230.76  Aligned_cols=158  Identities=22%  Similarity=0.264  Sum_probs=148.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Q 013643          274 TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQT  353 (439)
Q Consensus       274 d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~  353 (439)
                      +..+.++|+.||..|+.++++.|++.|+++|..|..|+||||+||..|+.+++++|+++|++++.+|.+|.||||+|+..
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA  601 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHh
Q 013643          354 ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK  433 (439)
Q Consensus       354 g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~  433 (439)
                      |+.+++++|++.++..+.  ..|.++||+|+..|+.+++++|+++|+|++.+|.+|.||||+|+..|+.    +++++|+
T Consensus       602 g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~----~iv~~Ll  675 (823)
T PLN03192        602 KHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHV----DMVRLLI  675 (823)
T ss_pred             CCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH----HHHHHHH
Confidence            999999999998876553  4577999999999999999999999999999999999999999999995    9999999


Q ss_pred             cCCC
Q 013643          434 QLPT  437 (439)
Q Consensus       434 ~~~~  437 (439)
                      +.+.
T Consensus       676 ~~GA  679 (823)
T PLN03192        676 MNGA  679 (823)
T ss_pred             HcCC
Confidence            8664

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=9e-24  Score=232.23  Aligned_cols=212  Identities=22%  Similarity=0.115  Sum_probs=176.1

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHhC--CCCCCCCCCCCCCCcCC-------hHHHHHHHhhcCCCcccCCCCCchHHHHH
Q 013643          214 VPPKNPKWAVYGRGLDDVSEFFNSG--NYDPPDKKSDGPRRKLF-------TKEEKVLLNKKLPHLATATSKKWLPLHSL  284 (439)
Q Consensus       214 ~~g~t~l~~A~~~g~~eiv~~Ll~~--ga~~n~~~~~~g~t~L~-------~~~~~~lL~~~~~d~~~~d~~g~tpLh~A  284 (439)
                      ..++..++.|+..|+.+.++.+++.  +.++|..+ ..|+||||       +.++.++|...+.    .+..|.||||.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d-~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A   89 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPD-RLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAI   89 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcC-ccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHH
Confidence            4567889999999999999999998  89999888 89999999       7788999998886    567899999999


Q ss_pred             HHcC---CHHHHHHHHhCCCC------Cc----ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC-----------
Q 013643          285 AASG---EFYFVDALLKHNVD------IN----AVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-----------  340 (439)
Q Consensus       285 a~~g---~~eivk~LL~~gad------in----~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d-----------  340 (439)
                      +..+   ...++..+...+.+      ++    .....|.||||+||..|+.++|++|+++|++++.++           
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~  169 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGV  169 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCC
Confidence            8732   22344444444422      11    123569999999999999999999999999998653           


Q ss_pred             ---CCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcC---------CHHHHHHHHHcCCCC------
Q 013643          341 ---EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQAR---------RTDIVKLLLIKGADK------  402 (439)
Q Consensus       341 ---~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g---------~~eiv~~LL~~Gadi------  402 (439)
                         ..|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..+         ...+.+++++.+++.      
T Consensus       170 ~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el  249 (743)
T TIGR00870       170 DSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKEL  249 (743)
T ss_pred             CcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhh
Confidence               25899999999999999999999999999999999999999999987         234667777766554      


Q ss_pred             -CCCCCCCCCHHHHHHHcCCcchHHHHHHHHhc
Q 013643          403 -TLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ  434 (439)
Q Consensus       403 -~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~  434 (439)
                       +..|.+|.|||++|+..|+.    +++++|++
T Consensus       250 ~~i~N~~g~TPL~~A~~~g~~----~l~~lLL~  278 (743)
T TIGR00870       250 EVILNHQGLTPLKLAAKEGRI----VLFRLKLA  278 (743)
T ss_pred             hhhcCCCCCCchhhhhhcCCc----cHHHHHHH
Confidence             67799999999999999997    77777776

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=1.9e-23  Score=187.99  Aligned_cols=145  Identities=17%  Similarity=0.138  Sum_probs=132.2

Q ss_pred             cCCCcccCCCCCchHHHHHHHcCCH----HHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHH---HHHHHHHCCCCCCc
Q 013643          266 KLPHLATATSKKWLPLHSLAASGEF----YFVDALLKHNVDINAVDKDGLTALHKAIIGKKQA---VTNYLLRESANPFV  338 (439)
Q Consensus       266 ~~~d~~~~d~~g~tpLh~Aa~~g~~----eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~---iv~~LL~~ga~v~~  338 (439)
                      ++++++..+..+.++||.||+.|+.    +++++|++.|++++..|..|+||||+|+..|+.+   ++++|+++|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            4566666778888999999999998    6667888999999999999999999999998865   48999999999999


Q ss_pred             cC-CCCCCHHHHHHHcCCHHHHHHHHh-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 013643          339 VD-EDGATLLHYAVQTASSPAIKILLL-YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGL  410 (439)
Q Consensus       339 ~d-~~g~TpLh~A~~~g~~~iV~~Ll~-~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~  410 (439)
                      ++ ..|.||||+|+..|+.+++++|+. .|++++.++..|+||||+|+..++.+++++|+++|++++.++..|.
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            98 589999999999999999999995 7999999999999999999999999999999999999999987774

>PHA02792 ankyrin-like protein; Provisional

Probab=99.91  E-value=4.8e-23  Score=215.48  Aligned_cols=223  Identities=12%  Similarity=0.012  Sum_probs=187.7

Q ss_pred             CCCCCCCcHHH-HHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC-------hHHHHHHHhhcCCCcc-----------
Q 013643          211 TQRVPPKNPKW-AVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF-------TKEEKVLLNKKLPHLA-----------  271 (439)
Q Consensus       211 ~~~~~g~t~l~-~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~-------~~~~~~lL~~~~~d~~-----------  271 (439)
                      ....+|.++++ .|..+|+.|+|++|+++||++|.++ ..|.++++       +.+++++|++.|++..           
T Consensus        66 ~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~-n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~  144 (631)
T PHA02792         66 YKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIK-NGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIII  144 (631)
T ss_pred             cCccCCccHHHHHHHhcccHHHHHHHHHcCCCccccc-CCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhh
Confidence            45667888874 5566789999999999999999998 67889876       7899999999998743           


Q ss_pred             -------------------------cCCCCCchHHHHHHHcC-------CHHHHHHHHhCCCCCcccCCCCChHHHHHHH
Q 013643          272 -------------------------TATSKKWLPLHSLAASG-------EFYFVDALLKHNVDINAVDKDGLTALHKAII  319 (439)
Q Consensus       272 -------------------------~~d~~g~tpLh~Aa~~g-------~~eivk~LL~~gadin~~d~~g~t~L~~Aa~  319 (439)
                                               ..+..|.||||+|+..+       +.++++.|+++|++++..|..|.||||+|+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~  224 (631)
T PHA02792        145 EQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVD  224 (631)
T ss_pred             hhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHH
Confidence                                     23556899999999999       8999999999999999999999999999999


Q ss_pred             cC--CHHHHHHHHHCCC----------------------CCCc--c----------------------------------
Q 013643          320 GK--KQAVTNYLLRESA----------------------NPFV--V----------------------------------  339 (439)
Q Consensus       320 ~g--~~~iv~~LL~~ga----------------------~v~~--~----------------------------------  339 (439)
                      ..  ..+++++|+....                      +++.  .                                  
T Consensus       225 ~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  304 (631)
T PHA02792        225 KCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTD  304 (631)
T ss_pred             cccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhH
Confidence            99  8899999866321                      0110  0                                  


Q ss_pred             ----------------------------C---CCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCC--CcHHHHHHHc
Q 013643          340 ----------------------------D---EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDG--WTPLHLAVQA  386 (439)
Q Consensus       340 ----------------------------d---~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G--~TpLh~A~~~  386 (439)
                                                  +   ......++.|+..|+.++|++|+++|||++.+|..|  .||||+|+..
T Consensus       305 ~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n  384 (631)
T PHA02792        305 SIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSI  384 (631)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHh
Confidence                                        0   013456888999999999999999999999998775  5999998876


Q ss_pred             CCH---HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643          387 RRT---DIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       387 g~~---eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                      ...   +++++|+++|||++.+|..|.||||+|+..++.    +++++|++++.+
T Consensus       385 ~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~----eivelLLs~GAD  435 (631)
T PHA02792        385 HESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSV----SLVEWLIDNGAD  435 (631)
T ss_pred             ccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCH----HHHHHHHHCCCC
Confidence            654   468999999999999999999999999999995    999999988653

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=9.6e-24  Score=210.98  Aligned_cols=199  Identities=26%  Similarity=0.315  Sum_probs=177.4

Q ss_pred             HHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHH
Q 013643          219 PKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYF  292 (439)
Q Consensus       219 ~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~ei  292 (439)
                      .+..|+..|..+-++.|+..|++++.++ .+|.|+||      +.+++.+|+++|++++..|..+|||||.|+..|+..+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n-~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCN-VDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccC-CccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            3788899999999999999999999998 99999999      8899999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCcccCCCCChHHHHHH-------------HcC-C------------HHHHHHHHHCCCCCCccCCCCCCH
Q 013643          293 VDALLKHNVDINAVDKDGLTALHKAI-------------IGK-K------------QAVTNYLLRESANPFVVDEDGATL  346 (439)
Q Consensus       293 vk~LL~~gadin~~d~~g~t~L~~Aa-------------~~g-~------------~~iv~~LL~~ga~v~~~d~~g~Tp  346 (439)
                      +++|+.+|+++...+.+|..|+..|.             ..| .            +.=++.++..|...+..+..|.|+
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~  201 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATA  201 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchH
Confidence            99999999998777777665544331             111 1            111344556888888888889999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 013643          347 LHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLY  418 (439)
Q Consensus       347 Lh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~  418 (439)
                      ||.|+.+|..++.++|+++|.+++.+|.+||||||.|+.+|..+++++|+++|++.+.++..|.||+++|..
T Consensus       202 lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  202 LHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999875

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=1.3e-23  Score=200.72  Aligned_cols=155  Identities=29%  Similarity=0.406  Sum_probs=142.0

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhCC-CCCcccCCCCChHHHHHHHc-----CCHHHHHHHHHCCCCCCccCC-C
Q 013643          270 LATATSKKWLPLHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIG-----KKQAVTNYLLRESANPFVVDE-D  342 (439)
Q Consensus       270 ~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~g-adin~~d~~g~t~L~~Aa~~-----g~~~iv~~LL~~ga~v~~~d~-~  342 (439)
                      +|..|.+|.|+||||+.++++++|+.||+.| ++++.++.-|+||+++|+..     .+.++|..|.+-| ++|++.. .
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            5678999999999999999999999999987 68999999999999999863     4678898888875 6776654 7


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCC
Q 013643          343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL-IKGADKTLKNRDGLTPLDLCLYSGR  421 (439)
Q Consensus       343 g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL-~~Gadi~~~d~~G~TpL~~A~~~g~  421 (439)
                      |.|+||+|+.+|+.++|+.||.+|+|+|.+|.+|.|+|+.|+..||.|||++|| ..++|+...|.+|.|+|.+|...||
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            999999999999999999999999999999999999999999999999999999 5699999999999999999999999


Q ss_pred             cchH
Q 013643          422 DTRT  425 (439)
Q Consensus       422 ~~~~  425 (439)
                      .+..
T Consensus       420 ~eIa  423 (452)
T KOG0514|consen  420 REIA  423 (452)
T ss_pred             hHHH
Confidence            7443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=4.6e-23  Score=212.49  Aligned_cols=227  Identities=22%  Similarity=0.186  Sum_probs=205.6

Q ss_pred             CCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHH
Q 013643          210 CTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHS  283 (439)
Q Consensus       210 ~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~  283 (439)
                      ...+..|.|+||-|+.+|+.+++++|++..+-+..++ ..|.+|||      +.++.+.++..+..+|.....|.||||.
T Consensus        43 n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d-~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhl  121 (854)
T KOG0507|consen   43 NLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCD-TKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHL  121 (854)
T ss_pred             cccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhh-ccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccch
Confidence            4556689999999999999999999999999999999 89999999      8888999998899999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC--------CccCCCCCCHHHHHHHcCC
Q 013643          284 LAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP--------FVVDEDGATLLHYAVQTAS  355 (439)
Q Consensus       284 Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v--------~~~d~~g~TpLh~A~~~g~  355 (439)
                      ||++|+.+++.+|+++|+|+-.++..+.|+|.+|++.|..++|+.|++....+        ..++-.+.+|||.|+++|+
T Consensus       122 aaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh  201 (854)
T KOG0507|consen  122 AAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGH  201 (854)
T ss_pred             hhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcch
Confidence            99999999999999999999999999999999999999999999998863321        2345578899999999999


Q ss_pred             HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643          356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~  435 (439)
                      .++++.|++.|.++|.....| |+||.|+.+|..++|++|++-|.+...+|..|+|+|++-...-. .+.++|+-.++..
T Consensus       202 ~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~-~~~~ei~ga~~~~  279 (854)
T KOG0507|consen  202 VECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQE-NRRYEIAGAVKNF  279 (854)
T ss_pred             HHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcch-hhhhhhhhhhhcc
Confidence            999999999999999887665 89999999999999999999999999999999999998887765 4778888888876


Q ss_pred             CCCC
Q 013643          436 PTSK  439 (439)
Q Consensus       436 ~~~k  439 (439)
                      ..+|
T Consensus       280 ~~~~  283 (854)
T KOG0507|consen  280 EQWK  283 (854)
T ss_pred             cccc
Confidence            6543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=6.1e-22  Score=217.76  Aligned_cols=206  Identities=18%  Similarity=0.145  Sum_probs=162.4

Q ss_pred             CCCCCCCCCcHHH-HHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCCh-----HHH----HHHHhhcCCC------c--
Q 013643          209 TCTQRVPPKNPKW-AVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFT-----KEE----KVLLNKKLPH------L--  270 (439)
Q Consensus       209 ~~~~~~~g~t~l~-~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~-----~~~----~~lL~~~~~d------~--  270 (439)
                      ....+..|+|||| +|+.+++.+++++|++.|+    .+ ..|.|+||.     .+.    ..++...+.+      .  
T Consensus        45 in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~-~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~  119 (743)
T TIGR00870        45 INCPDRLGRSALFVAAIENENLELTELLLNLSC----RG-AVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELAND  119 (743)
T ss_pred             CCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CC-CcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhcc
Confidence            3456678999999 9999999999999999987    34 789999991     122    2333333221      1  


Q ss_pred             --ccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccC--------------CCCChHHHHHHHcCCHHHHHHHHHCCC
Q 013643          271 --ATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVD--------------KDGLTALHKAIIGKKQAVTNYLLRESA  334 (439)
Q Consensus       271 --~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d--------------~~g~t~L~~Aa~~g~~~iv~~LL~~ga  334 (439)
                        ......|.||||+||..|+.++|++|+++|++++..+              ..|.||||+|+..|+.+++++|+++|+
T Consensus       120 ~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga  199 (743)
T TIGR00870       120 QYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPA  199 (743)
T ss_pred             ccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCc
Confidence              1123569999999999999999999999999998653              358999999999999999999999999


Q ss_pred             CCCccCCCCCCHHHHHHHcC---------CHHHHHHHHhCCCCC-------ccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 013643          335 NPFVVDEDGATLLHYAVQTA---------SSPAIKILLLYNVDI-------NLQDNDGWTPLHLAVQARRTDIVKLLLIK  398 (439)
Q Consensus       335 ~v~~~d~~g~TpLh~A~~~g---------~~~iV~~Ll~~gadi-------n~~d~~G~TpLh~A~~~g~~eiv~~LL~~  398 (439)
                      +++.+|..|+||||+|+..+         ...+.++++..++..       +..|.+|.||||+|+..|+.+++++|++.
T Consensus       200 din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       200 DILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             chhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence            99999999999999999987         234566676665543       66799999999999999999999999997


Q ss_pred             CCCCCCCCCCCCCHHHHHHHc
Q 013643          399 GADKTLKNRDGLTPLDLCLYS  419 (439)
Q Consensus       399 Gadi~~~d~~G~TpL~~A~~~  419 (439)
                      +++.......+..|.+.+...
T Consensus       280 ~~~~kk~~a~~~~~~~~~~~~  300 (743)
T TIGR00870       280 KYKQKKFVAWPNGQQLLSLYW  300 (743)
T ss_pred             HHhcceeeccCcchHhHhhhc
Confidence            655544444555555555443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.87  E-value=1.4e-21  Score=169.50  Aligned_cols=159  Identities=27%  Similarity=0.266  Sum_probs=144.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH
Q 013643          279 LPLHSLAASGEFYFVDALLKHNVD-INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSP  357 (439)
Q Consensus       279 tpLh~Aa~~g~~eivk~LL~~gad-in~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~  357 (439)
                      -.+.+|+..+.+..|+.||+..++ +|.+|.+|+||||.|+.+|+.+||+.|+..|++++.+...|+||||.||...+.+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            356799999999999999998877 8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCccCCCCCCcHHHHHHHcCCH-HHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643          358 AIKILLLYNVDINLQDNDGWTPLHLAVQARRT-DIVKLLL-IKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       358 iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~-eiv~~LL-~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~  435 (439)
                      ++..|+++|+|+|+.....+||||+|+...+. ..+.+|+ ..+.++..++..+.||+++|-+.+-..-.+++++-..+.
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~lfe~~e~~~~~  224 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYLFEIVEGCMNS  224 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHHHHHHHHHhhC
Confidence            99999999999999999999999999988765 4677776 678999999999999999999998877778888776665


Q ss_pred             CC
Q 013643          436 PT  437 (439)
Q Consensus       436 ~~  437 (439)
                      ++
T Consensus       225 ~~  226 (228)
T KOG0512|consen  225 SP  226 (228)
T ss_pred             CC
Confidence            43

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=1.7e-21  Score=175.81  Aligned_cols=130  Identities=21%  Similarity=0.274  Sum_probs=92.3

Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHh------CCCCCcccCCCCChHHHHHHHcCC----HHHHHHHHHCCCCCCccCC
Q 013643          272 TATSKKWLPLHSLAASGEFYFVDALLK------HNVDINAVDKDGLTALHKAIIGKK----QAVTNYLLRESANPFVVDE  341 (439)
Q Consensus       272 ~~d~~g~tpLh~Aa~~g~~eivk~LL~------~gadin~~d~~g~t~L~~Aa~~g~----~~iv~~LL~~ga~v~~~d~  341 (439)
                      ..+..|.|+||+||..|+.++++.|+.      .|++++.+|..|.||||+|+..|+    .+++++|++.|++++.++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            345667777777777777777777643      256677777777777777777776    4667777777777777664


Q ss_pred             -CCCCHHHHHHHcCCHHHHHHHHh-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 013643          342 -DGATLLHYAVQTASSPAIKILLL-YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD  401 (439)
Q Consensus       342 -~g~TpLh~A~~~g~~~iV~~Ll~-~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gad  401 (439)
                       .|.||||+|+..++.+++++|+. .|++++..|..|+||||+|+..++.+++++|++.++-
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence             67777777777777777777776 4777777777777777777777777777777766543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.2e-21  Score=176.29  Aligned_cols=135  Identities=17%  Similarity=0.221  Sum_probs=123.2

Q ss_pred             CCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH---HHHHHHhCCCCCcc
Q 013643          299 HNVDINAVDKDGLTALHKAIIGKKQ----AVTNYLLRESANPFVVDEDGATLLHYAVQTASSP---AIKILLLYNVDINL  371 (439)
Q Consensus       299 ~gadin~~d~~g~t~L~~Aa~~g~~----~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~---iV~~Ll~~gadin~  371 (439)
                      +|++++..+..+.++||.||+.|+.    +++++|++.|+.++.+|..|+||||+|+..|+.+   ++++|+++|+++|.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            5677888888899999999999998    6777888999999999999999999999998865   48999999999999


Q ss_pred             CC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643          372 QD-NDGWTPLHLAVQARRTDIVKLLLI-KGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       372 ~d-~~G~TpLh~A~~~g~~eiv~~LL~-~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~  437 (439)
                      ++ ..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.    +++++|++.+.
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~----~iv~~Ll~~ga  152 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDR----RMMEILRANGA  152 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCH----HHHHHHHHcCC
Confidence            98 589999999999999999999995 8999999999999999999999995    89999998764

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=1.9e-21  Score=175.49  Aligned_cols=128  Identities=24%  Similarity=0.355  Sum_probs=116.9

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHH------CCCCCCccCCCCCCHHHHHHHcCC----HHHHHHHHhCCCCCccCC
Q 013643          304 NAVDKDGLTALHKAIIGKKQAVTNYLLR------ESANPFVVDEDGATLLHYAVQTAS----SPAIKILLLYNVDINLQD  373 (439)
Q Consensus       304 n~~d~~g~t~L~~Aa~~g~~~iv~~LL~------~ga~v~~~d~~g~TpLh~A~~~g~----~~iV~~Ll~~gadin~~d  373 (439)
                      +.++..|.|+||+|+..|+.+++++|+.      .|++++.+|..|.||||+|+..|+    .+++++|+.+|+++|.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            4567889999999999999999999854      368899999999999999999999    589999999999999998


Q ss_pred             C-CCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643          374 N-DGWTPLHLAVQARRTDIVKLLLI-KGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       374 ~-~G~TpLh~A~~~g~~eiv~~LL~-~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~  435 (439)
                      . .|+||||+|+..++.+++++|++ .|++++.+|..|+|||++|+..|+.    +++++|++.
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~----~iv~~L~~~  154 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDV----AMMQILREI  154 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCH----HHHHHHHHH
Confidence            5 99999999999999999999997 5999999999999999999999996    777777764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=5.5e-21  Score=186.22  Aligned_cols=154  Identities=23%  Similarity=0.209  Sum_probs=130.9

Q ss_pred             cccCCCCCch-HHHHHHHcCCHHHHHHHHhCCCCCcccC----CCCChHHHHHHHcCCHHHHHHHHHCCCCCCcc-CCCC
Q 013643          270 LATATSKKWL-PLHSLAASGEFYFVDALLKHNVDINAVD----KDGLTALHKAIIGKKQAVTNYLLRESANPFVV-DEDG  343 (439)
Q Consensus       270 ~~~~d~~g~t-pLh~Aa~~g~~eivk~LL~~gadin~~d----~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~-d~~g  343 (439)
                      +...|..++| +||.|+..|+.+++++|+++|+++|..+    ..|.||||+|+..++.+++++|+++|++++.+ +..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            3445666655 6777778899999999999999999874    58999999999999999999999999999986 4689


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcc
Q 013643          344 ATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDT  423 (439)
Q Consensus       344 ~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~  423 (439)
                      .||||+|+..|+.+++++|+.+|++++.+|..|+||||+|++.++.+++.++.  |+.   .+..+.+|++++.   +  
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~---n--  174 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKILI---N--  174 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhhc---c--
Confidence            99999999999999999999999999999999999999999999999887665  322   3556778888652   3  


Q ss_pred             hHHHHHHHHhcC
Q 013643          424 RTFGMIKLLKQL  435 (439)
Q Consensus       424 ~~~eiik~L~~~  435 (439)
                        .+++++|+++
T Consensus       175 --~ei~~~Lish  184 (300)
T PHA02884        175 --FDILKILVSH  184 (300)
T ss_pred             --HHHHHHHHHH
Confidence              4777777664

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=2.4e-21  Score=172.00  Aligned_cols=131  Identities=22%  Similarity=0.194  Sum_probs=108.2

Q ss_pred             ccCCCCCchHHHHHHHcCCHHHHHHHHhCCC--C-----CcccCCCCChHHHHHHHcCCH---HHHHHHHHCCCCCCccC
Q 013643          271 ATATSKKWLPLHSLAASGEFYFVDALLKHNV--D-----INAVDKDGLTALHKAIIGKKQ---AVTNYLLRESANPFVVD  340 (439)
Q Consensus       271 ~~~d~~g~tpLh~Aa~~g~~eivk~LL~~ga--d-----in~~d~~g~t~L~~Aa~~g~~---~iv~~LL~~ga~v~~~d  340 (439)
                      +..|..|.||||+||..|+.  +.++...+.  +     ++..|..|+||||+|+..|+.   +++++|++.|++++.++
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~   88 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE   88 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccC
Confidence            34577899999999999984  333333222  2     234578899999999998886   46889999999999887


Q ss_pred             -CCCCCHHHHHHHcCCHHHHHHHHhC-CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 013643          341 -EDGATLLHYAVQTASSPAIKILLLY-NVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKT  403 (439)
Q Consensus       341 -~~g~TpLh~A~~~g~~~iV~~Ll~~-gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~  403 (439)
                       ..|.||||+|+..|+.+++++|+.. |++++.++..|+||||+|+..|+.+++++|+++|++.+
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence             4899999999999999999999974 89999999999999999999999999999999998865

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.84  E-value=6.5e-21  Score=196.69  Aligned_cols=211  Identities=24%  Similarity=0.281  Sum_probs=182.0

Q ss_pred             cHHHHHHhcCcHHHHHHHHhCC-------------CCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCc
Q 013643          218 NPKWAVYGRGLDDVSEFFNSGN-------------YDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKW  278 (439)
Q Consensus       218 t~l~~A~~~g~~eiv~~Ll~~g-------------a~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~  278 (439)
                      +.+.-|+..|..+.+..|++..             ..+|..+ ..|.|.||      +.++..+|.+..+-++..+..|.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd-~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~   83 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQD-YSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGI   83 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccC-ccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCc
Confidence            3467788999999999998752             3345555 68889888      77889999999999999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH
Q 013643          279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPA  358 (439)
Q Consensus       279 tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~i  358 (439)
                      +|||+|+..|+.+++++|+.++..+|.....|.||||.|+..||.+++.+|+++|+++-.++..+.|+|.+|++.|..++
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~V  163 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEV  163 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHH
Confidence            99999999999999999999998899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCC--------ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHH
Q 013643          359 IKILLLYNVDI--------NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIK  430 (439)
Q Consensus       359 V~~Ll~~gadi--------n~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik  430 (439)
                      |+.|+....++        ..++-.+.+|||.|+++|+.++++.|+++|.|+|...++| |+||.|+..|..    +++.
T Consensus       164 vq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~----evvr  238 (854)
T KOG0507|consen  164 VQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKA----EVVR  238 (854)
T ss_pred             HHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcc----hhhh
Confidence            99999763322        2334567799999999999999999999999999988876 999999999997    5665


Q ss_pred             HHhc
Q 013643          431 LLKQ  434 (439)
Q Consensus       431 ~L~~  434 (439)
                      +|++
T Consensus       239 ~ll~  242 (854)
T KOG0507|consen  239 FLLE  242 (854)
T ss_pred             HHHh
Confidence            5554

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=8.4e-21  Score=181.62  Aligned_cols=160  Identities=24%  Similarity=0.290  Sum_probs=135.5

Q ss_pred             CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHc---
Q 013643          211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAAS---  287 (439)
Q Consensus       211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~---  287 (439)
                      ..+.+|+|+||++..+.+.++|+.|++.|.                           ++++..+.-|.||++.|+..   
T Consensus       263 laDsNGNTALHYsVSHaNF~VV~~LLDSgv---------------------------C~VD~qNrAGYtpiMLaALA~lk  315 (452)
T KOG0514|consen  263 LADSNGNTALHYAVSHANFDVVSILLDSGV---------------------------CDVDQQNRAGYTPVMLAALAKLK  315 (452)
T ss_pred             hhcCCCCeeeeeeecccchHHHHHHhccCc---------------------------ccccccccccccHHHHHHHHhhc
Confidence            455677788888888888888888876651                           34555556667777776654   


Q ss_pred             --CCHHHHHHHHhCCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh
Q 013643          288 --GEFYFVDALLKHNVDINAVD-KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLL  364 (439)
Q Consensus       288 --g~~eivk~LL~~gadin~~d-~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~  364 (439)
                        .+.++|..|...| |+|.+- ..|+|+|++|+..|+.++|+.||.-|+|+|.+|.+|.|+||+||++||.++|++||.
T Consensus       316 ~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA  394 (452)
T KOG0514|consen  316 QPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLA  394 (452)
T ss_pred             chhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhc
Confidence              4678899888876 677653 469999999999999999999999999999999999999999999999999999998


Q ss_pred             C-CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 013643          365 Y-NVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK  398 (439)
Q Consensus       365 ~-gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~  398 (439)
                      . ++|+...|.+|.|+|.+|...|+.||.-+|+.+
T Consensus       395 ~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  395 VPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             cCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            7 899999999999999999999999999999854

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1.2e-19  Score=176.80  Aligned_cols=157  Identities=15%  Similarity=0.069  Sum_probs=134.0

Q ss_pred             CCCCCCc-HHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCH
Q 013643          212 QRVPPKN-PKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEF  290 (439)
Q Consensus       212 ~~~~g~t-~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~  290 (439)
                      .+..++| +|++|+..|+.+++++|+++|++++..+.                        ..+..|.||||+|+..|+.
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~------------------------~sd~~g~TpLh~Aa~~~~~   83 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFP------------------------LSENSKTNPLIYAIDCDND   83 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCc------------------------ccCCCCCCHHHHHHHcCCH
Confidence            3344444 58999999999999999999999987640                        1245688999999999999


Q ss_pred             HHHHHHHhCCCCCccc-CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Q 013643          291 YFVDALLKHNVDINAV-DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDI  369 (439)
Q Consensus       291 eivk~LL~~gadin~~-d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadi  369 (439)
                      +++++|+++|+++|.. +..|.||||+|+..|+.+++++|+.+|++++.+|..|.||||+|+..++.+++..+.  |.. 
T Consensus        84 eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~-  160 (300)
T PHA02884         84 DAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE-  160 (300)
T ss_pred             HHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc-
Confidence            9999999999999986 467999999999999999999999999999999999999999999999988876654  332 


Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 013643          370 NLQDNDGWTPLHLAVQARRTDIVKLLLIKGA  400 (439)
Q Consensus       370 n~~d~~G~TpLh~A~~~g~~eiv~~LL~~Ga  400 (439)
                        .+..+.+|++++   ++.+++++|+.+++
T Consensus       161 --~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        161 --ISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             --ccccccChhhhh---ccHHHHHHHHHHHH
Confidence              456677888875   47899999999887

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=3.2e-20  Score=164.74  Aligned_cols=129  Identities=22%  Similarity=0.275  Sum_probs=109.8

Q ss_pred             CcccCCCCChHHHHHHHcCCHHHHHHHHHCCC--C-----CCccCCCCCCHHHHHHHcCCH---HHHHHHHhCCCCCccC
Q 013643          303 INAVDKDGLTALHKAIIGKKQAVTNYLLRESA--N-----PFVVDEDGATLLHYAVQTASS---PAIKILLLYNVDINLQ  372 (439)
Q Consensus       303 in~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga--~-----v~~~d~~g~TpLh~A~~~g~~---~iV~~Ll~~gadin~~  372 (439)
                      .+..|..|.||||+||..|+.  +.++...+.  +     ++.+|..|.||||+|+..|+.   +++++|++.|++++.+
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~   87 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK   87 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence            456678899999999999984  344333222  1     234688999999999999986   4689999999999999


Q ss_pred             C-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643          373 D-NDGWTPLHLAVQARRTDIVKLLLI-KGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       373 d-~~G~TpLh~A~~~g~~eiv~~LL~-~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~  437 (439)
                      + ..|+||||+|+..|+.+++++|+. .|+|++.+|..|.|||++|+..|+.    +++++|++.+.
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~----~i~~~Ll~~ga  150 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDA----KMMNILRAKGA  150 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCH----HHHHHHHHcCC
Confidence            8 499999999999999999999997 5999999999999999999999995    89999988654

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=7.5e-20  Score=183.24  Aligned_cols=178  Identities=25%  Similarity=0.322  Sum_probs=152.7

Q ss_pred             hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q 013643          256 TKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN  335 (439)
Q Consensus       256 ~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~  335 (439)
                      ..+.+..++..++.++..+.+|.|+||-+|...+.+||++|+++|++||..|..++||||.|+..|+..++++|+.+|++
T Consensus        52 d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~  131 (527)
T KOG0505|consen   52 DLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGAN  131 (527)
T ss_pred             cHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhh
Confidence            34667778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCHHHHHHHcCCH--------------------------HHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCH
Q 013643          336 PFVVDEDGATLLHYAVQTASS--------------------------PAIKILLLYNVDINLQDNDGWTPLHLAVQARRT  389 (439)
Q Consensus       336 v~~~d~~g~TpLh~A~~~g~~--------------------------~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~  389 (439)
                      +...+.+|..|+..|......                          .=+...+..|.+.+..+..|-|+||+|+.+|+.
T Consensus       132 ~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~  211 (527)
T KOG0505|consen  132 LLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYT  211 (527)
T ss_pred             hhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHH
Confidence            887877776665544321111                          112233346888888888899999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643          390 DIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       390 eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~  437 (439)
                      ++.++|+++|.+++.+|.+|+||||.|+..|+.    ++.++|.++..
T Consensus       212 e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~----~~~elL~~~ga  255 (527)
T KOG0505|consen  212 EVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQE----DACELLVEHGA  255 (527)
T ss_pred             HHHHHHHHhccCcccccccCCCcccHHHHhhhH----hHHHHHHHhhc
Confidence            999999999999999999999999999999996    77777777654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.78  E-value=1.5e-19  Score=191.28  Aligned_cols=218  Identities=21%  Similarity=0.141  Sum_probs=193.4

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccC-CCCCchHHHHHHH
Q 013643          214 VPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATA-TSKKWLPLHSLAA  286 (439)
Q Consensus       214 ~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~-d~~g~tpLh~Aa~  286 (439)
                      .+-.|+|-.||.+|+.|++++|+..|+++...+ +.|.+||+      +..+++.|.++-++++.. |..+.|+|.+||.
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rganiehrd-kkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs  833 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGANIEHRD-KKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS  833 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhcccccccc-cccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC
Confidence            445688999999999999999999999999999 89999998      778888888888888864 6678899999999


Q ss_pred             cCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC--CCCCCHHHHHHHcCCHHHHHHHHh
Q 013643          287 SGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD--EDGATLLHYAVQTASSPAIKILLL  364 (439)
Q Consensus       287 ~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d--~~g~TpLh~A~~~g~~~iV~~Ll~  364 (439)
                      .|..++|++||..|++-..++...+|||.+|...|..++|+.|+.+|+.+|.+.  +.|..||++|..+|+.+.++.|++
T Consensus       834 ggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~  913 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQ  913 (2131)
T ss_pred             CCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhc
Confidence            999999999999999988888888999999999999999999999999888764  468899999999999999999999


Q ss_pred             CCCCCccC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643          365 YNVDINLQ-DNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       365 ~gadin~~-d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~  436 (439)
                      .|.|+|.. ..+.+|+|-+|+..|+.++|.+||.+.+++..+-+.|.|||+-++..|..    ++=.+|+..+
T Consensus       914 ~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyv----dvg~~li~~g  982 (2131)
T KOG4369|consen  914 PGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYV----DVGNLLIAAG  982 (2131)
T ss_pred             ccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCcc----ccchhhhhcc
Confidence            99999876 45677999999999999999999999999999999999999999999985    6666666543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.78  E-value=1.1e-18  Score=151.60  Aligned_cols=120  Identities=31%  Similarity=0.350  Sum_probs=109.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHH
Q 013643          312 TALHKAIIGKKQAVTNYLLRESAN-PFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTD  390 (439)
Q Consensus       312 t~L~~Aa~~g~~~iv~~LL~~ga~-v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~e  390 (439)
                      -.+.+|+..+.+..|+.||+..++ +|.+|.+|+||||-|+.+|+.+||+.|+..|++++.+...||||||.||...+.+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            356889999999999999987665 7999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhc
Q 013643          391 IVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ  434 (439)
Q Consensus       391 iv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~  434 (439)
                      |+.+||++|||+++.....+||||+|+...+.   +.-+.+|+.
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~---r~t~~~Ll~  185 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNS---RDTLELLLH  185 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccch---HHHHHHHhh
Confidence            99999999999999999999999999988875   445555554

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=2.9e-18  Score=137.52  Aligned_cols=89  Identities=39%  Similarity=0.561  Sum_probs=71.5

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHH
Q 013643          314 LHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVK  393 (439)
Q Consensus       314 L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~  393 (439)
                      ||+||..|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            6788888888888888888777664    778888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcCCCCCCCC
Q 013643          394 LLLIKGADKTLKN  406 (439)
Q Consensus       394 ~LL~~Gadi~~~d  406 (439)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            8888888887765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.77  E-value=7e-19  Score=163.80  Aligned_cols=115  Identities=30%  Similarity=0.383  Sum_probs=67.4

Q ss_pred             CCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHH
Q 013643          302 DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLH  381 (439)
Q Consensus       302 din~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh  381 (439)
                      |.|.-|..|.+|||+||..|+..+|+.|+.+|+.+|..+....||||+|+..|+.++|+.|++..+|+|+.+..|+||||
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplh  105 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLH  105 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchh
Confidence            44455555555556555555555555555555555555555555566655556655555555555555555555666666


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 013643          382 LAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLC  416 (439)
Q Consensus       382 ~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A  416 (439)
                      |||..|+..|++-|+..||.+++.+++|.|||+.|
T Consensus       106 yacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  106 YACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             hhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            66666555555555555655555555555555544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.76  E-value=1.1e-18  Score=184.68  Aligned_cols=202  Identities=20%  Similarity=0.179  Sum_probs=155.9

Q ss_pred             hhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCC
Q 013643          203 VNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSK  276 (439)
Q Consensus       203 l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~  276 (439)
                      +..+.++...+..|.+||+.|+..|+..+|+.|+.+.+++.......+.|+|.      ..+++++|+..|++-..++-.
T Consensus       777 v~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvs  856 (2131)
T KOG4369|consen  777 VVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVS  856 (2131)
T ss_pred             HHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchh
Confidence            34445666777788888888888888888888888888887665577778777      778888888888887777777


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCcccC--CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCC-CCCCHHHHHHHc
Q 013643          277 KWLPLHSLAASGEFYFVDALLKHNVDINAVD--KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDE-DGATLLHYAVQT  353 (439)
Q Consensus       277 g~tpLh~Aa~~g~~eivk~LL~~gadin~~d--~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~-~g~TpLh~A~~~  353 (439)
                      ..|||..|...|.+++++.|+.+|+.||.+.  +.|-+||++|+.+||.+.++.|++.|.++|..-. +-+|+|.+|+..
T Consensus       857 DytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fq  936 (2131)
T KOG4369|consen  857 DYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQ  936 (2131)
T ss_pred             hcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeecccc
Confidence            7888888888888888888888888887663  4577888888888888888888888888776433 455777777777


Q ss_pred             CCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 013643          354 ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL  404 (439)
Q Consensus       354 g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~  404 (439)
                      |+.++|.+||.+.+++..+-..|.|||+-++..|.+|+=++|+..|||+|.
T Consensus       937 gr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~na  987 (2131)
T KOG4369|consen  937 GRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNA  987 (2131)
T ss_pred             CcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhccccccc
Confidence            777777777777777777777777777777777777777777777776653

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=3.4e-17  Score=137.34  Aligned_cols=122  Identities=42%  Similarity=0.588  Sum_probs=80.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHc
Q 013643          307 DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQA  386 (439)
Q Consensus       307 d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~  386 (439)
                      +..|.||||+|+..++.+++++|++.+.+.+..+..|.|+||+|+..++.+++++|+..|++++..+..|.||+|+|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            34566666666666666666666666666555666666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHH
Q 013643          387 RRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL  432 (439)
Q Consensus       387 g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L  432 (439)
                      ++.+++++|+++|.+++..+..|.||+++|...++.    +++++|
T Consensus        84 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~L  125 (126)
T cd00204          84 GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL----EVVKLL  125 (126)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCH----HHHHHh
Confidence            666666666666666666666666677666666653    555555

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=3.6e-18  Score=159.08  Aligned_cols=141  Identities=23%  Similarity=0.315  Sum_probs=123.2

Q ss_pred             hhcCCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCC
Q 013643          264 NKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDG  343 (439)
Q Consensus       264 ~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g  343 (439)
                      -....|+|..|..|.+|||+||+.|+..+++.|+.+|+.+|..+...-||||+|+..||.++|+.|++..+++|..+..|
T Consensus        21 d~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehg  100 (448)
T KOG0195|consen   21 DDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHG  100 (448)
T ss_pred             cCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccC
Confidence            34456788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 013643          344 ATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL  404 (439)
Q Consensus       344 ~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~  404 (439)
                      .|||||||..|...+.+-|+.+|+-++..+..|.|||..|.---...+.+.--++|.+++.
T Consensus       101 ntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen  101 NTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             CCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCc
Confidence            9999999999999999999999999999999999999987432222222222356766653

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.75  E-value=8.3e-18  Score=175.96  Aligned_cols=164  Identities=28%  Similarity=0.330  Sum_probs=141.9

Q ss_pred             CCcccCCCCCchHHHHHHHc---CCHHHHHHHHhCCCC-Cc----ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcc
Q 013643          268 PHLATATSKKWLPLHSLAAS---GEFYFVDALLKHNVD-IN----AVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV  339 (439)
Q Consensus       268 ~d~~~~d~~g~tpLh~Aa~~---g~~eivk~LL~~gad-in----~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~  339 (439)
                      .+++.....|.|.||.|..+   ++.++++.|++.-.. +|    ...+.|+||||.|+.+.+.++|++|++.||||+++
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR  213 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHAR  213 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhH
Confidence            45666677899999999984   456889999876332 11    23467999999999999999999999999999865


Q ss_pred             C-----------------------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 013643          340 D-----------------------EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL  396 (439)
Q Consensus       340 d-----------------------~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL  396 (439)
                      .                       ..|..||.+||..++.+++++|+++|||++.+|..|+|.||..+..-..++-.+++
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L  293 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLAL  293 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHH
Confidence            2                       13778999999999999999999999999999999999999999998899999999


Q ss_pred             HcCCC--CCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643          397 IKGAD--KTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       397 ~~Gad--i~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~  435 (439)
                      ++|++  ...+|+.|.|||.+|++.|+.    +|.+.++|.
T Consensus       294 ~~ga~~l~~v~N~qgLTPLtLAaklGk~----emf~~ile~  330 (782)
T KOG3676|consen  294 ELGANALEHVRNNQGLTPLTLAAKLGKK----EMFQHILER  330 (782)
T ss_pred             hcCCCccccccccCCCChHHHHHHhhhH----HHHHHHHHh
Confidence            99999  899999999999999999997    777777765

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=4.7e-17  Score=136.49  Aligned_cols=124  Identities=38%  Similarity=0.547  Sum_probs=118.6

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHH
Q 013643          273 ATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQ  352 (439)
Q Consensus       273 ~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~  352 (439)
                      .+..|+||||+|+..|+.+++++|++++.+.+..+..|.++||.|+..++.+++++|++.|++++..+..|.||+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            35678999999999999999999999999988999999999999999999999999999999999899999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 013643          353 TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL  396 (439)
Q Consensus       353 ~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL  396 (439)
                      .++.+++++|+..|.+++..+..|.||+++|...++.+++++|+
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999999999999999999999999999999984

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.74  E-value=1.9e-17  Score=132.78  Aligned_cols=89  Identities=34%  Similarity=0.489  Sum_probs=83.2

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHH
Q 013643          281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIK  360 (439)
Q Consensus       281 Lh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~  360 (439)
                      ||+||..|+.+++++|++.+.+++.    |.||||+||..|+.+++++|+++|++++.++..|.||||+|+.+|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999999999999988876    889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCccCC
Q 013643          361 ILLLYNVDINLQD  373 (439)
Q Consensus       361 ~Ll~~gadin~~d  373 (439)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.68  E-value=2.2e-16  Score=165.38  Aligned_cols=147  Identities=21%  Similarity=0.263  Sum_probs=129.2

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccC-----------------------CCCChHHHHHHHcCCHHHHHHHH
Q 013643          274 TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVD-----------------------KDGLTALHKAIIGKKQAVTNYLL  330 (439)
Q Consensus       274 d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d-----------------------~~g~t~L~~Aa~~g~~~iv~~LL  330 (439)
                      ...|+||||.|+.+.+.++|++|++.|||++++-                       +.|..||.+||.-++.+++++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            4679999999999999999999999999998641                       24778999999999999999999


Q ss_pred             HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--CccCCCCCCcHHHHHHHcCCHHHHHHHHHc-C--------
Q 013643          331 RESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD--INLQDNDGWTPLHLAVQARRTDIVKLLLIK-G--------  399 (439)
Q Consensus       331 ~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gad--in~~d~~G~TpLh~A~~~g~~eiv~~LL~~-G--------  399 (439)
                      ++|+|++.+|..|+|.||..+..-..++.++++++|++  ...+|.+|.|||.+|++.|..++.+.+++. +        
T Consensus       261 ~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGp  340 (782)
T KOG3676|consen  261 AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGP  340 (782)
T ss_pred             hcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecc
Confidence            99999999999999999999999999999999999999  889999999999999999999999999987 1        


Q ss_pred             -----CCCCCCCC--CCCCHHHHHHHcC
Q 013643          400 -----ADKTLKNR--DGLTPLDLCLYSG  420 (439)
Q Consensus       400 -----adi~~~d~--~G~TpL~~A~~~g  420 (439)
                           -+.+..|.  +-.++|.+.+...
T Consensus       341 vtsslYpL~~iDT~~n~~SvLeivvyg~  368 (782)
T KOG3676|consen  341 VTSSLYPLNSIDTIGNENSVLEIVVYGI  368 (782)
T ss_pred             cccccccchhcccccchhhhhhhhhcCC
Confidence                 23334443  3357777777663

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.64  E-value=8.1e-15  Score=135.44  Aligned_cols=131  Identities=39%  Similarity=0.492  Sum_probs=112.3

Q ss_pred             CcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCC-----HHHHHHHHHCCC---CCCccC
Q 013643          269 HLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKK-----QAVTNYLLRESA---NPFVVD  340 (439)
Q Consensus       269 d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~-----~~iv~~LL~~ga---~v~~~d  340 (439)
                      .....+..+.++++.++..+...++++++..|++++..+..|.|+||+|+..++     .+++++|++.|+   ..+.++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             ccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            344455667888999999999888889999999988888899999999999888     899999999888   555668


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 013643          341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG  399 (439)
Q Consensus       341 ~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~G  399 (439)
                      ..|.||||+|+..|+.+++++|++.|++++..+..|.|++++|+..++.+++++|++.+
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            88999999999999889999999999988888888999999999999999998888865

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.61  E-value=8.9e-15  Score=135.16  Aligned_cols=128  Identities=38%  Similarity=0.455  Sum_probs=118.8

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC-----HHHHHHHHhCCC---CCccCCCC
Q 013643          304 NAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS-----SPAIKILLLYNV---DINLQDND  375 (439)
Q Consensus       304 n~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~-----~~iV~~Ll~~ga---din~~d~~  375 (439)
                      ...+..+.++++.++..+..+++.+++..|++++.++..|.||||+|+..++     .+++++|++.|+   +.+.++..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            3455668899999999999999999999999999999999999999999999     999999999999   66677999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643          376 GWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       376 G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~  435 (439)
                      |+||||+|+..|+.+++++|++.|++++.++..|.|+++.|+..++.    ++++++++.
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~----~~~~~l~~~  202 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRI----ELVKLLLDK  202 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchH----HHHHHHHhc
Confidence            99999999999999999999999999999999999999999999997    777777663

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.59  E-value=5.3e-15  Score=115.90  Aligned_cols=100  Identities=29%  Similarity=0.360  Sum_probs=76.7

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHH
Q 013643          314 LHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVK  393 (439)
Q Consensus       314 L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~  393 (439)
                      +.|++.+|..+-|+..+..|.++|.. ..|++|||+|+-.|..+++++|+..|++++.+|..|-|||..|+..||.++|+
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVk   84 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVK   84 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHH
Confidence            56677777777777777777777643 37778888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcCCCCCCCCCCCCCHHH
Q 013643          394 LLLIKGADKTLKNRDGLTPLD  414 (439)
Q Consensus       394 ~LL~~Gadi~~~d~~G~TpL~  414 (439)
                      +||++|||...+.-+|.+.+.
T Consensus        85 lLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   85 LLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             HHHHcCcccceeCCCchhHHh
Confidence            888888887777777766654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.54  E-value=4.7e-14  Score=110.61  Aligned_cols=104  Identities=23%  Similarity=0.253  Sum_probs=95.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH
Q 013643          279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPA  358 (439)
Q Consensus       279 tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~i  358 (439)
                      ..+.|++++|.++-|+-.+..|.++|.. ..|++|||+|+-.|++++++||+.-|++++.+|+.|-|||..|+..||.++
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            3567999999999999999999998876 489999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCccCCCCCCcHHHHH
Q 013643          359 IKILLLYNVDINLQDNDGWTPLHLA  383 (439)
Q Consensus       359 V~~Ll~~gadin~~d~~G~TpLh~A  383 (439)
                      |++|++.|+|-.....+|.+.+..+
T Consensus        83 VklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   83 VKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHcCcccceeCCCchhHHhhc
Confidence            9999999999888888888765543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.49  E-value=1.3e-13  Score=149.49  Aligned_cols=105  Identities=30%  Similarity=0.310  Sum_probs=80.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH
Q 013643          279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPA  358 (439)
Q Consensus       279 tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~i  358 (439)
                      ..|+.|+..|+.+++++|+++|+++|..|..|+||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            45777777788888888888888877777777888888888888888888888787777777777888888888888888


Q ss_pred             HHHHHhC-------CCCCccCCCCCCcHHHHH
Q 013643          359 IKILLLY-------NVDINLQDNDGWTPLHLA  383 (439)
Q Consensus       359 V~~Ll~~-------gadin~~d~~G~TpLh~A  383 (439)
                      +++|+.+       |++++..+..|.+|+..+
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            8877777       777777777777775544

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=1.7e-13  Score=136.89  Aligned_cols=118  Identities=25%  Similarity=0.265  Sum_probs=106.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH
Q 013643          280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAI  359 (439)
Q Consensus       280 pLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV  359 (439)
                      .|.-|+..|.+++|+..+..-.|+...+.+|.|+||-|+..||.+||+||++.|++||..|.+||||||||+..++..++
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            35568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCccCC-CCCCcHHHHHH--HcCCHHHHHHHHH
Q 013643          360 KILLLYNVDINLQD-NDGWTPLHLAV--QARRTDIVKLLLI  397 (439)
Q Consensus       360 ~~Ll~~gadin~~d-~~G~TpLh~A~--~~g~~eiv~~LL~  397 (439)
                      +.|++.|+-|-+.. .++.||..-+-  +.|+.+|.+||..
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999998876654 46778877653  5689999999973

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=1.9e-13  Score=136.52  Aligned_cols=118  Identities=25%  Similarity=0.356  Sum_probs=102.2

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHH
Q 013643          314 LHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVK  393 (439)
Q Consensus       314 L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~  393 (439)
                      |.-|+..|-+++|+..+..-.|+...+..|-|+||.|+..||.+||+||++.|+++|..|.+||||||+|+.++++.+++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            45578999999999999988899889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCC-CCCCCHHHHHHHcCCcchHHHHHHHHh
Q 013643          394 LLLIKGADKTLKN-RDGLTPLDLCLYSGRDTRTFGMIKLLK  433 (439)
Q Consensus       394 ~LL~~Gadi~~~d-~~G~TpL~~A~~~g~~~~~~eiik~L~  433 (439)
                      .|++.|+-+-+.. .++.||.+-|-....  ....+.+||-
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~ee--GY~~CsqyL~  672 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEE--GYDQCSQYLY  672 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhh--hHHHHHHHHH
Confidence            9999999876544 678899877654322  2235666663

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=7e-14  Score=102.32  Aligned_cols=55  Identities=45%  Similarity=0.683  Sum_probs=28.8

Q ss_pred             HHhCC-CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 013643          362 LLLYN-VDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLC  416 (439)
Q Consensus       362 Ll~~g-adin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A  416 (439)
                      |+++| ++++.+|..|.||||+|+..|+.++|++|+++|+|++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56666 77888888888888888888888888888888888888888888888876

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.45  E-value=4.2e-13  Score=145.51  Aligned_cols=106  Identities=29%  Similarity=0.348  Sum_probs=99.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHH
Q 013643          312 TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDI  391 (439)
Q Consensus       312 t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~ei  391 (439)
                      ..|+.|+..|+.+++++|+++|+++|.+|..|.||||+|+.+|+.++|++|+++|++++.+|..|+||||+|+..|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc-------CCCCCCCCCCCCCHHHHHH
Q 013643          392 VKLLLIK-------GADKTLKNRDGLTPLDLCL  417 (439)
Q Consensus       392 v~~LL~~-------Gadi~~~d~~G~TpL~~A~  417 (439)
                      +++|+++       |++.+..+..|.+|+..+.
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999998       9999988888888876555

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.40  E-value=1.9e-12  Score=121.17  Aligned_cols=119  Identities=19%  Similarity=0.168  Sum_probs=88.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCc-cCCCCCCHHHHHHHcCCH
Q 013643          278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV-VDEDGATLLHYAVQTASS  356 (439)
Q Consensus       278 ~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~-~d~~g~TpLh~A~~~g~~  356 (439)
                      ..+|..++..|+.+-...|++---.+|.+|..|.|+|..|+..|+.++|++||+.|+|+|. ++..+.||||+|+..|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            4677777777777777777776555777777777777777777777777777777777764 345677777777777777


Q ss_pred             HHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 013643          357 PAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL  396 (439)
Q Consensus       357 ~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL  396 (439)
                      ++.++|++.|+.....+.-|+|+-..|+.-|+.++|..+-
T Consensus        93 dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   93 DVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             hHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            7777777777777777777777777777777777776653

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.39  E-value=7.6e-13  Score=96.00  Aligned_cols=54  Identities=48%  Similarity=0.701  Sum_probs=25.0

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 013643          343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL  396 (439)
Q Consensus       343 g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL  396 (439)
                      |.|+||+|+..|+.+++++|+++|+++|.+|.+|+||||+|++.|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            345555555555555555555555555555555555555555555555555543

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.39  E-value=2.3e-12  Score=120.56  Aligned_cols=112  Identities=25%  Similarity=0.298  Sum_probs=100.6

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccC-CCCCCcHHHHHHHcCCH
Q 013643          311 LTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQ-DNDGWTPLHLAVQARRT  389 (439)
Q Consensus       311 ~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~-d~~G~TpLh~A~~~g~~  389 (439)
                      .++|.-++-.|..+-...||..--++|.+|..|.++|..|+..|+.++|++|++.|+|+|.. +..+.||||+|+..|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            47888888888888888888876678889999999999999999999999999999999865 56788999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCc
Q 013643          390 DIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD  422 (439)
Q Consensus       390 eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~  422 (439)
                      ++.++|++.|+.....|.-|+|+-.+|+.-||.
T Consensus        93 dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H  125 (396)
T KOG1710|consen   93 DVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHH  125 (396)
T ss_pred             hHHHHHHhccCccccccchhhhHHHHHHHhcch
Confidence            999999999999999999999999999999987

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.38  E-value=5e-13  Score=97.76  Aligned_cols=55  Identities=40%  Similarity=0.560  Sum_probs=27.0

Q ss_pred             HHHCC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHH
Q 013643          329 LLRES-ANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLA  383 (439)
Q Consensus       329 LL~~g-a~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A  383 (439)
                      ||++| ++++.+|..|.||||+||..|+.++|++|++.|+|++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45666 77777777778888888888888888877777888888888888887776

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.33  E-value=2.4e-12  Score=93.30  Aligned_cols=54  Identities=43%  Similarity=0.638  Sum_probs=45.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHh
Q 013643          376 GWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK  433 (439)
Q Consensus       376 G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~  433 (439)
                      |+||||+|++.|+.+++++|+++|+|++.+|.+|.||||+|+..|+.    +++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~----~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNI----DIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-H----HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCH----HHHHHHC
Confidence            78999999999999999999999999999999999999999999995    9999985

...

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.84  E-value=1.6e-09  Score=113.80  Aligned_cols=84  Identities=31%  Similarity=0.473  Sum_probs=66.4

Q ss_pred             CcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHH
Q 013643          303 INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDE-DGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLH  381 (439)
Q Consensus       303 in~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~-~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh  381 (439)
                      .|..|..|+|+||+|+..+...++++||++|++++.+|. .|+||||-|+..|+++++-+|+.+|+.+..+|.+|..||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            566777788888888888888888888888888877776 6788888888888888888888888888888888888887


Q ss_pred             HHHHc
Q 013643          382 LAVQA  386 (439)
Q Consensus       382 ~A~~~  386 (439)
                      .-++-
T Consensus       125 ~~~r~  129 (1267)
T KOG0783|consen  125 FLSRV  129 (1267)
T ss_pred             HHhhc
Confidence            76653

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.80  E-value=5e-09  Score=104.20  Aligned_cols=89  Identities=25%  Similarity=0.214  Sum_probs=49.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCccCCCCCCcHHHHHHHcCC
Q 013643          310 GLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLY-NVDINLQDNDGWTPLHLAVQARR  388 (439)
Q Consensus       310 g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~-gadin~~d~~G~TpLh~A~~~g~  388 (439)
                      +...+++|+..|.+..++.+.-.|.+++.+|.+.+|+||.|+..|+.+++++|++. +++++.+|+.|+|||.-|...+|
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h  585 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKH  585 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCc
Confidence            33445555555555555555555555555555555555555555555555555544 55555555555555555555555


Q ss_pred             HHHHHHHHHc
Q 013643          389 TDIVKLLLIK  398 (439)
Q Consensus       389 ~eiv~~LL~~  398 (439)
                      .+++++|-+.
T Consensus       586 ~~v~k~L~~~  595 (622)
T KOG0506|consen  586 KEVVKLLEEA  595 (622)
T ss_pred             HHHHHHHHHH
Confidence            5555555543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.80  E-value=4e-09  Score=104.83  Aligned_cols=92  Identities=29%  Similarity=0.389  Sum_probs=84.6

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHc
Q 013643          341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI-KGADKTLKNRDGLTPLDLCLYS  419 (439)
Q Consensus       341 ~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~-~Gadi~~~d~~G~TpL~~A~~~  419 (439)
                      .++...+++|+..|.+..++-+.-.|.|++.+|.+.+|+||+|+..|+.+++++|++ .+.|++.+|++|+|||+-|...
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            355678999999999999999988999999999999999999999999999999996 6899999999999999999999


Q ss_pred             CCcchHHHHHHHHhcCC
Q 013643          420 GRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       420 g~~~~~~eiik~L~~~~  436 (439)
                      +|.    +++++|.+..
T Consensus       584 ~h~----~v~k~L~~~~  596 (622)
T KOG0506|consen  584 KHK----EVVKLLEEAQ  596 (622)
T ss_pred             CcH----HHHHHHHHHh
Confidence            996    8888887643

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.78  E-value=2.5e-08  Score=99.72  Aligned_cols=84  Identities=25%  Similarity=0.323  Sum_probs=41.1

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q 013643          314 LHKAIIGKKQAVTNYLLRESANPFVVDE-DGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV  392 (439)
Q Consensus       314 L~~Aa~~g~~~iv~~LL~~ga~v~~~d~-~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv  392 (439)
                      ||..++.|++++.-.||..|+++|..+. .|.||||.|++.|+.--+++|+-+|+|++..|.+|+||+.+|-..||.++.
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~la  216 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELA  216 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHH
Confidence            4444445555444444444555444433 344555555555554445555555555555555555555555555554444


Q ss_pred             HHHHH
Q 013643          393 KLLLI  397 (439)
Q Consensus       393 ~~LL~  397 (439)
                      +-|++
T Consensus       217 eRl~e  221 (669)
T KOG0818|consen  217 ERLVE  221 (669)
T ss_pred             HHHHH
Confidence            44443

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.78  E-value=2.3e-08  Score=101.26  Aligned_cols=119  Identities=22%  Similarity=0.320  Sum_probs=99.8

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--CccCCCCCCcHHHHHHHcCCHHH
Q 013643          314 LHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD--INLQDNDGWTPLHLAVQARRTDI  391 (439)
Q Consensus       314 L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gad--in~~d~~G~TpLh~A~~~g~~ei  391 (439)
                      +.-|+..+.+--++-+-.+|.++-.++.+..+.||+|+..|+-++|+|++++|..  ++..|..|.|+||-|+-.++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            4555666665555556667888888888889999999999999999999999764  56778899999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643          392 VKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       392 v~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~  436 (439)
                      +++|++.||.+...|..|.||-.-|-..|..    ++..||.+..
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~----dlaayle~rq  990 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDP----DLAAYLESRQ  990 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCc----hHHHHHhhhh
Confidence            9999999999999999999999999999997    7888887643

>PF13606 Ank_3: Ankyrin repeat

Probab=98.71  E-value=1.8e-08  Score=63.60  Aligned_cols=29  Identities=52%  Similarity=0.714  Sum_probs=22.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 013643          375 DGWTPLHLAVQARRTDIVKLLLIKGADKT  403 (439)
Q Consensus       375 ~G~TpLh~A~~~g~~eiv~~LL~~Gadi~  403 (439)
                      +|+||||+|++.|+.++|++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            46777777777777777777777777776

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.71  E-value=5.5e-08  Score=97.31  Aligned_cols=96  Identities=24%  Similarity=0.204  Sum_probs=77.1

Q ss_pred             cccCCCCCch------HHHHHHHcCCHHHHHHHHhCCCCCcccCC-CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCC
Q 013643          270 LATATSKKWL------PLHSLAASGEFYFVDALLKHNVDINAVDK-DGLTALHKAIIGKKQAVTNYLLRESANPFVVDED  342 (439)
Q Consensus       270 ~~~~d~~g~t------pLh~Aa~~g~~eivk~LL~~gadin~~d~-~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~  342 (439)
                      +...|.+|-+      -||..++.|+++..-.||..|+++|..+. .|.||||.|+..|+..-+++|+-.|+|++..|.+
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~  199 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSS  199 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCC
Confidence            4445555544      48888888888888888888888886654 4888888888888888888888888888888888


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhC
Q 013643          343 GATLLHYAVQTASSPAIKILLLY  365 (439)
Q Consensus       343 g~TpLh~A~~~g~~~iV~~Ll~~  365 (439)
                      |.||+.+|-..||-++.+-|++.
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHHH
Confidence            88888888888888888877764

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.68  E-value=1.1e-08  Score=107.67  Aligned_cols=83  Identities=24%  Similarity=0.345  Sum_probs=67.2

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCC-CChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHH
Q 013643          270 LATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKD-GLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLH  348 (439)
Q Consensus       270 ~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~-g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh  348 (439)
                      .+..|..|+++||.|+..|..++++||+.+|++++.+|.+ |+||||.|+..|+++++-+||.+|+.+..+|++|.+||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            4567778888888888888888888888888888877764 888888888888888888888888888888888888887


Q ss_pred             HHHH
Q 013643          349 YAVQ  352 (439)
Q Consensus       349 ~A~~  352 (439)
                      .-++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            6655

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.67  E-value=3.1e-08  Score=64.03  Aligned_cols=33  Identities=55%  Similarity=0.748  Sum_probs=26.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 013643          375 DGWTPLHLAVQARRTDIVKLLLIKGADKTLKNR  407 (439)
Q Consensus       375 ~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~  407 (439)
                      +|+||||+|+..|+.+++++|+++|+|++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            477888888888888888888888888887763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.63  E-value=1.1e-07  Score=96.46  Aligned_cols=118  Identities=20%  Similarity=0.220  Sum_probs=106.7

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC--CCccCCCCCCHHHHHHHcCCHHH
Q 013643          281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN--PFVVDEDGATLLHYAVQTASSPA  358 (439)
Q Consensus       281 Lh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~--v~~~d~~g~TpLh~A~~~g~~~i  358 (439)
                      |..|+..+++--++-+...|-++-.++.+..+.||+|+..|+-++|+|+|++|..  ++..|..|.|+||-|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            6678888887777777788888888889999999999999999999999999864  45678899999999999999999


Q ss_pred             HHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 013643          359 IKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK  398 (439)
Q Consensus       359 V~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~  398 (439)
                      .++|++.|+.+-..|..|.||-.-|-+.|..++..||-.+
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999999999999999999999999999743

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.60  E-value=1.1e-07  Score=96.76  Aligned_cols=88  Identities=27%  Similarity=0.381  Sum_probs=53.3

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC----ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCH
Q 013643          314 LHKAIIGKKQAVTNYLLRESANPF----VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRT  389 (439)
Q Consensus       314 L~~Aa~~g~~~iv~~LL~~ga~v~----~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~  389 (439)
                      |..|+...++..+-+||.+|....    ..+.+|+|+||+||..|++.+.++|+-+|+|+-.+|..|+|||.||-+.|.-
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            344444555555556666554322    1233556666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHcCCC
Q 013643          390 DIVKLLLIKGAD  401 (439)
Q Consensus       390 eiv~~LL~~Gad  401 (439)
                      +|+.+|+++|+-
T Consensus       708 ec~d~llq~gcp  719 (749)
T KOG0705|consen  708 ECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHcCCC
Confidence            666666666653

>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia

Probab=98.58  E-value=5.6e-09  Score=103.66  Aligned_cols=72  Identities=25%  Similarity=0.230  Sum_probs=66.7

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLS  170 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l~  170 (439)
                      .+|+|+++||+||+|.+|.+.+++        |.+|||..|.+...|++|..+.+  .|+|++++||+       |++..
T Consensus       234 ~~GiVl~~~G~Gn~p~~~~~~l~~a~~~gi~VV~~Sq~~~G~v~~~y~~g~~l~~--~G~i~~~~lt~-------e~A~~  304 (323)
T cd00411         234 YKGIVLAGYGAGNVPTDLIDELEEAAERGVVVVNSTQCEEGAVTRDYEVGGALAK--YGIIASGDLNP-------EKARI  304 (323)
T ss_pred             CCEEEEEeECCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCcccCCcccccchhh--CCEEECCCCCH-------HHHHH
Confidence            599999999999999988887777        89999999999877999998998  99999999999       99999


Q ss_pred             ccCCCcccCCC
Q 013643          171 QLNPPLVLDKP  181 (439)
Q Consensus       171 ~l~p~~~l~~~  181 (439)
                      +|+  ++|++.
T Consensus       305 kL~--~~L~~~  313 (323)
T cd00411         305 LLM--LALTQT  313 (323)
T ss_pred             HHH--HHHcCC
Confidence            999  999875

In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.

>TIGR00519 asnASE_I L-asparaginases, type I

Probab=98.55  E-value=8.4e-09  Score=102.87  Aligned_cols=72  Identities=18%  Similarity=0.109  Sum_probs=66.1

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL  169 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l  169 (439)
                      .||+|+++||+||+|.+|.+.+++        |++|||..|.|. ..|+.|..+.+  .|+|+++|||+       |++.
T Consensus       236 ~~GiVl~~~G~Gn~p~~~~~~l~~a~~~Gi~VV~~Sq~~~G~v~~~~Y~~g~~l~~--~G~i~~g~lt~-------e~A~  306 (336)
T TIGR00519       236 YKGIVIEGTGLGHAPQNKLQELQEASDRGVVVVMTTQCLNGRVNMNVYSTGRRLLQ--AGVIGGEDMLP-------EVAL  306 (336)
T ss_pred             CCEEEEeeECCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCccCcccccchhhHHh--CCEEECCCCCH-------HHHH
Confidence            599999999999999988887777        999999999886 46999999998  99999999999       9999


Q ss_pred             hccCCCcccCCC
Q 013643          170 SQLNPPLVLDKP  181 (439)
Q Consensus       170 ~~l~p~~~l~~~  181 (439)
                      ++|+  ++|++.
T Consensus       307 ~kL~--~~L~~~  316 (336)
T TIGR00519       307 VKLM--WLLGQY  316 (336)
T ss_pred             HHHH--HHHcCC
Confidence            9999  999875

Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.54  E-value=2e-07  Score=94.87  Aligned_cols=92  Identities=28%  Similarity=0.327  Sum_probs=81.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCC--Cc--ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC
Q 013643          279 LPLHSLAASGEFYFVDALLKHNVD--IN--AVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTA  354 (439)
Q Consensus       279 tpLh~Aa~~g~~eivk~LL~~gad--in--~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g  354 (439)
                      .-|..|+...++..+-+||.+|..  +|  .-+.+|+|+||+||+.|+..+.++|+-+|+|+-.+|..|+|+|.||-+.|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            357788888899999999999865  23  33567899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCc
Q 013643          355 SSPAIKILLLYNVDIN  370 (439)
Q Consensus       355 ~~~iV~~Ll~~gadin  370 (439)
                      ..+++..|+++|+.-+
T Consensus       706 sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPDE  721 (749)
T ss_pred             cHHHHHHHHHcCCCcc
Confidence            9999999999997543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.53  E-value=1.2e-07  Score=96.13  Aligned_cols=86  Identities=33%  Similarity=0.463  Sum_probs=58.0

Q ss_pred             HHHHHHHcCCHHHHHH-HH-HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHH
Q 013643          313 ALHKAIIGKKQAVTNY-LL-RESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTD  390 (439)
Q Consensus       313 ~L~~Aa~~g~~~iv~~-LL-~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~e  390 (439)
                      ++|+++.....+-... |. +.+..++.+|..|.||||+|+..|+.+.++.|+.+|+++..+|+.||+|||-|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            4777776555444433 22 234456667777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHc
Q 013643          391 IVKLLLIK  398 (439)
Q Consensus       391 iv~~LL~~  398 (439)
                      ++..++.+
T Consensus       103 ~i~~vlr~  110 (560)
T KOG0522|consen  103 IITEVLRH  110 (560)
T ss_pred             HHHHHHHH
Confidence            66666643

>PF13606 Ank_3: Ankyrin repeat

Probab=98.52  E-value=1.3e-07  Score=59.66  Aligned_cols=28  Identities=36%  Similarity=0.462  Sum_probs=17.6

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCc
Q 013643          343 GATLLHYAVQTASSPAIKILLLYNVDIN  370 (439)
Q Consensus       343 g~TpLh~A~~~g~~~iV~~Ll~~gadin  370 (439)
                      |+||||+||..|+.++|++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5566666666666666666666666655

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.48  E-value=5.7e-07  Score=95.90  Aligned_cols=121  Identities=26%  Similarity=0.304  Sum_probs=101.7

Q ss_pred             chHHHHHHHcCCHHHHHHHHhCC----CCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Q 013643          278 WLPLHSLAASGEFYFVDALLKHN----VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQT  353 (439)
Q Consensus       278 ~tpLh~Aa~~g~~eivk~LL~~g----adin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~  353 (439)
                      .--...|+..|+.-.|+..++..    .++|+.|.-|+++|+.|+.+.+.+++++|++++..+       ..+|.+|+..
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~   98 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAV   98 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHH
Confidence            34566899999999999988763    568899999999999999999999999999987654       3489999999


Q ss_pred             CCHHHHHHHHhCCCCC----------ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 013643          354 ASSPAIKILLLYNVDI----------NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLK  405 (439)
Q Consensus       354 g~~~iV~~Ll~~gadi----------n~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~  405 (439)
                      |..++|++++.+-...          ......+.|||.+||..++.||+++|+++|+.+...
T Consensus        99 ~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   99 GSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            9999999999873222          122346789999999999999999999999987653

>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated

Probab=98.47  E-value=1.7e-08  Score=102.96  Aligned_cols=72  Identities=15%  Similarity=0.081  Sum_probs=66.2

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL  169 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l  169 (439)
                      .+|+|+++||.||+|.+|.+.+++        |.+|||..|.|. ..|++|..+.+  +|+|+++||++       |++.
T Consensus       313 ~~GiVleg~G~Gnvp~~~~~~l~~a~~~Gi~VV~tSqc~~G~V~~~~Y~~g~~l~~--~GvI~~gdmtp-------e~A~  383 (419)
T PRK04183        313 YKGIVIEGTGLGHVSTDLIPSIKRATDDGIPVVMTSQCLYGRVNMNVYSTGRDLLK--AGVIPGEDMLP-------EVAY  383 (419)
T ss_pred             CCEEEEEeECCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCccCcccccchhhHhh--CCEEECCCCCH-------HHHH
Confidence            499999999999999988887777        899999999995 56999999999  99999999999       9999


Q ss_pred             hccCCCcccCCC
Q 013643          170 SQLNPPLVLDKP  181 (439)
Q Consensus       170 ~~l~p~~~l~~~  181 (439)
                      .+|+  ++|++.
T Consensus       384 vKLm--~~L~~~  393 (419)
T PRK04183        384 VKLM--WVLGNT  393 (419)
T ss_pred             HHHH--HHHhCC
Confidence            9999  999874

>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D

Probab=98.45  E-value=2.1e-08  Score=101.84  Aligned_cols=72  Identities=17%  Similarity=0.182  Sum_probs=66.3

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL  169 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l  169 (439)
                      .||+|+++||.||+|.+|.+.+++        |.+|||..|.|. ..|+.|..+.+  .|+|+++||++       |++.
T Consensus       300 ~~GiVleg~G~G~vp~~~~~~l~~a~~~GipVV~tSqc~~G~V~~~~Y~~g~~l~~--~GvI~~gdmtp-------e~A~  370 (404)
T TIGR02153       300 YKGIVIEGTGLGHVSEDWIPSIKRATDDGVPVVMTSQCLYGRVNLNVYSTGRELLK--AGVIPCEDMLP-------EVAY  370 (404)
T ss_pred             CCEEEEeeECCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCccCccccchhhhHhh--CCEEECCCCCH-------HHHH
Confidence            499999999999999998888777        899999999995 56999999999  99999999999       9999


Q ss_pred             hccCCCcccCCC
Q 013643          170 SQLNPPLVLDKP  181 (439)
Q Consensus       170 ~~l~p~~~l~~~  181 (439)
                      .+|+  ++|++.
T Consensus       371 vkLm--~~L~~~  380 (404)
T TIGR02153       371 VKLM--WVLGQT  380 (404)
T ss_pred             HHHH--HHHcCC
Confidence            9999  999874

This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.43  E-value=3.1e-07  Score=59.29  Aligned_cols=31  Identities=45%  Similarity=0.638  Sum_probs=19.3

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCccCC
Q 013643          343 GATLLHYAVQTASSPAIKILLLYNVDINLQD  373 (439)
Q Consensus       343 g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d  373 (439)
                      |.||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5566666666666666666666666666554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.40  E-value=7.2e-07  Score=90.51  Aligned_cols=87  Identities=26%  Similarity=0.263  Sum_probs=68.0

Q ss_pred             hHHHHHHHcCCHHHHHHHH--hCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH
Q 013643          279 LPLHSLAASGEFYFVDALL--KHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASS  356 (439)
Q Consensus       279 tpLh~Aa~~g~~eivk~LL--~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~  356 (439)
                      .|+|+++...+.+-+..++  +.+..++..|..|+||||+|+.-|+...++.|+.+|+++..++..|+++||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            3588888877776555533  33456777888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhC
Q 013643          357 PAIKILLLY  365 (439)
Q Consensus       357 ~iV~~Ll~~  365 (439)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            877766654

>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924

Probab=98.39  E-value=3.8e-08  Score=97.84  Aligned_cols=72  Identities=19%  Similarity=0.204  Sum_probs=65.3

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHH-HHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIAL-QIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL  169 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~-~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l  169 (439)
                      .+|+|+++||.||+|.+|.+.+++        |.+|||..|.|.. .|+.|..+.+  .|+|++++|++       |++.
T Consensus       236 ~~GlVl~~~G~Gn~p~~~~~~l~~a~~~gipVV~~sq~~~G~v~~~~y~~g~~l~~--~G~i~~g~lt~-------ekA~  306 (323)
T smart00870      236 AKGLVLEGTGAGNVPPDLLEALKEALERGIPVVRTSRCLNGRVDPGYYATGRDLAK--AGVISAGDLTP-------EKAR  306 (323)
T ss_pred             CCEEEEEeeCCCCCCHHHHHHHHHHHHCCCEEEEeccCCCceecccccccccchhh--CCEEECCCCCH-------HHHH
Confidence            599999999999999988887777        8899999998865 4888988888  99999999999       9999


Q ss_pred             hccCCCcccCCC
Q 013643          170 SQLNPPLVLDKP  181 (439)
Q Consensus       170 ~~l~p~~~l~~~  181 (439)
                      .+|+  ++|.+.
T Consensus       307 ~kL~--~~L~~~  316 (323)
T smart00870      307 IKLM--LALGKG  316 (323)
T ss_pred             HHHH--HHHcCC
Confidence            9999  999874

The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.

>PRK09461 ansA cytoplasmic asparaginase I; Provisional

Probab=98.37  E-value=4.7e-08  Score=97.52  Aligned_cols=72  Identities=19%  Similarity=0.235  Sum_probs=65.1

Q ss_pred             CCcccccccccCCCc--hhHHHHHHH--------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHh
Q 013643           99 GKQNVVQVEAENLVP--DKWKQVQEE--------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEA  167 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p--~~~~~~~~~--------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~  167 (439)
                      .+|+|+++||+||+|  .+|.+.+++        |.+|||..|.|. ..|+.|..+.+  .|+|++++|++       |+
T Consensus       234 ~~GiVl~~~G~Gn~p~~~~~~~~l~~~~~~Gi~VV~~Sr~~~G~v~~~~Y~~g~~l~~--~G~i~~g~lt~-------ek  304 (335)
T PRK09461        234 VKALILRSYGVGNAPQNPALLQELKEASERGIVVVNLTQCMSGKVNMGGYATGNALAH--AGVISGADMTV-------EA  304 (335)
T ss_pred             CCEEEEccCCCCCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCcCCccchhhhHHHHh--CCEEECCCCCH-------HH
Confidence            499999999999999  668877776        899999999886 67999999888  99999999999       99


Q ss_pred             hhhccCCCcccCCC
Q 013643          168 KLSQLNPPLVLDKP  181 (439)
Q Consensus       168 ~l~~l~p~~~l~~~  181 (439)
                      +..+|+  ++|++.
T Consensus       305 Ar~kL~--~~L~~~  316 (335)
T PRK09461        305 ALTKLH--YLLSQE  316 (335)
T ss_pred             HHHHHH--HHHhCC
Confidence            999999  999864

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.36  E-value=1.2e-06  Score=85.50  Aligned_cols=76  Identities=25%  Similarity=0.235  Sum_probs=63.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643          279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS  355 (439)
Q Consensus       279 tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~  355 (439)
                      --|+.||+.|+++.|++|++.|+++|.+|....+||.+|+..||.++|++|+++|+-...-.-+|.. -|+++.+.+
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~R-C~YgaLnd~  113 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDR-CHYGALNDR  113 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcch-hhhhhhhHH
Confidence            4689999999999999999999999999999999999999999999999999999965533334543 455555443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.27  E-value=6.5e-07  Score=97.69  Aligned_cols=81  Identities=41%  Similarity=0.562  Sum_probs=53.7

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 013643          341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG  420 (439)
Q Consensus       341 ~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g  420 (439)
                      ..|.|+||.|+..|..-++++|+++|+++|..|..|+||||.+...|+...+..|+++||+.++.+.+|.+|+++|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            34566666666666666666666666666666666666666666666666666666666666666666666666666553


Q ss_pred             C
Q 013643          421 R  421 (439)
Q Consensus       421 ~  421 (439)
                      +
T Consensus       734 ~  734 (785)
T KOG0521|consen  734 N  734 (785)
T ss_pred             c
Confidence            3

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.17  E-value=4.9e-06  Score=74.26  Aligned_cols=72  Identities=25%  Similarity=0.211  Sum_probs=45.9

Q ss_pred             CCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccC
Q 013643          301 VDINAVDKDGLTALHKAIIGKKQAVTNYLLRES-ANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQ  372 (439)
Q Consensus       301 adin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~g-a~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~  372 (439)
                      .++|.+|..|+|++++|+..|..+.+.||+.+| +.+...|..|.+++.+|-+.|..++|..|.++..+-...
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p   75 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHP   75 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCc
Confidence            456666666666666666666666666666666 566666666666666666666666666666654443333

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.12  E-value=7.5e-06  Score=79.95  Aligned_cols=84  Identities=20%  Similarity=0.135  Sum_probs=63.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHH
Q 013643          312 TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDI  391 (439)
Q Consensus       312 t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~ei  391 (439)
                      --|..||+.|..+.|++|++.|.++|.+|.....||.+|+..||.++|++|+++||--..-..+|.-++ |++.  +..|
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~-YgaL--nd~I  114 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH-YGAL--NDRI  114 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh-hhhh--hHHH
Confidence            457888999999999999999999999999888999999999999999999999876555445565543 3333  2345


Q ss_pred             HHHHHHc
Q 013643          392 VKLLLIK  398 (439)
Q Consensus       392 v~~LL~~  398 (439)
                      -++|+.+
T Consensus       115 R~mllsy  121 (516)
T KOG0511|consen  115 RRMLLSY  121 (516)
T ss_pred             HHHHHHH
Confidence            5566654

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.11  E-value=6.1e-06  Score=73.66  Aligned_cols=70  Identities=21%  Similarity=0.224  Sum_probs=64.8

Q ss_pred             CCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCC-CCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Q 013643          267 LPHLATATSKKWLPLHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP  336 (439)
Q Consensus       267 ~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~g-adin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v  336 (439)
                      +.++|..|..|||+++.|+..|+.+.+.||+.+| +.+...|..+.+++.+|-..|+.++++.|.+.-.+-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            4689999999999999999999999999999999 889999999999999999999999999999874443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.08  E-value=3.9e-06  Score=91.74  Aligned_cols=99  Identities=31%  Similarity=0.320  Sum_probs=87.1

Q ss_pred             hCCCCCccc--CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCC
Q 013643          298 KHNVDINAV--DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDND  375 (439)
Q Consensus       298 ~~gadin~~--d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~  375 (439)
                      .+++++|..  -..|.|+||.|+..|...++++|+++|+++|..|..|+||+|.+...|+...+..|++.|++.++.+.+
T Consensus       642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~  721 (785)
T KOG0521|consen  642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPD  721 (785)
T ss_pred             cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCcc
Confidence            334444432  235789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHH
Q 013643          376 GWTPLHLAVQARRTDIVKLLL  396 (439)
Q Consensus       376 G~TpLh~A~~~g~~eiv~~LL  396 (439)
                      |.+||++|....+.+++-+|.
T Consensus       722 ~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  722 GKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             CcchhhHHhhhccccHHHHHh
Confidence            999999998887777766665

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.07  E-value=4.6e-06  Score=90.92  Aligned_cols=127  Identities=24%  Similarity=0.350  Sum_probs=98.9

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHH
Q 013643          304 NAVDKDGLTALHKAIIGKKQAVTNYLLRE-SANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHL  382 (439)
Q Consensus       304 n~~d~~g~t~L~~Aa~~g~~~iv~~LL~~-ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~  382 (439)
                      ......|++.+|+++..+..-+++.+++- |......|.+|.--+|+++..|..-.+....-.|..++.+|..|||||||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            34456788999999999999999998885 66666677777778888554444334444445689999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCC------CCCCCCCHHHHHHHcCCcchHHHHHHHHhc
Q 013643          383 AVQARRTDIVKLLLIKGADKTL------KNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ  434 (439)
Q Consensus       383 A~~~g~~eiv~~LL~~Gadi~~------~d~~G~TpL~~A~~~g~~~~~~eiik~L~~  434 (439)
                      |+..|+..++..|++-|++...      .+-.|.|+-++|-.+|+.    .|--+|.+
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~----gia~~lse  701 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHK----GIAGYLSE  701 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhccccc----chHHHHhh
Confidence            9999999999999988876543      334689999999999997    55555544

>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []

Probab=98.03  E-value=2.4e-07  Score=91.80  Aligned_cols=72  Identities=17%  Similarity=0.110  Sum_probs=61.7

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL  169 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l  169 (439)
                      .+|+|+++||.||+|..|.+.+++        |.+|||..|.|. ..|+.|..+.+  .|+|++++||+       |++.
T Consensus       225 ~~GlVl~~~G~Gn~~~~~~~~l~~a~~~gipVV~~sr~~~G~v~~~~y~~~~~l~~--~Gvi~~g~lt~-------ekA~  295 (313)
T PF00710_consen  225 AKGLVLEGYGAGNVPPALLEALARAVERGIPVVVTSRCPSGGVDYGYYGSGRDLAE--AGVISGGDLTP-------EKAR  295 (313)
T ss_dssp             -SEEEEEEBTTTBSSHHHHHHHHHHHHTTSEEEEEESSSCS-BBTTSSCTSSHHHH--CTEEE-TT--H-------HHHH
T ss_pred             CCEEEEeccCCCCCCHHHHHHHHHHHhcCceEEEecccccCCcccccccchhhhhh--CCEEECCCCCH-------HHHH
Confidence            499999999999999998888877        899999999887 66999999999  99999999999       9999


Q ss_pred             hccCCCcccCCC
Q 013643          170 SQLNPPLVLDKP  181 (439)
Q Consensus       170 ~~l~p~~~l~~~  181 (439)
                      .+|.  ++|.+.
T Consensus       296 ~kL~--~~L~~~  305 (313)
T PF00710_consen  296 IKLM--LALAKG  305 (313)
T ss_dssp             HHHH--HHCTT-
T ss_pred             HHHH--HHHhCC
Confidence            9999  999884

The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.98  E-value=2.4e-05  Score=83.85  Aligned_cols=117  Identities=21%  Similarity=0.177  Sum_probs=96.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCC----CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHH
Q 013643          310 GLTALHKAIIGKKQAVTNYLLRES----ANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQ  385 (439)
Q Consensus       310 g~t~L~~Aa~~g~~~iv~~LL~~g----a~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~  385 (439)
                      +.--...|++.|+...|+..++..    .++|..|.-|+++|+.|+.+.+.+++++|++++..+       ..+|.+|+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~   97 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIA   97 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHH
Confidence            445678899999999998888742    467889999999999999999999999999987655       358999999


Q ss_pred             cCCHHHHHHHHHcCCCC----------CCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643          386 ARRTDIVKLLLIKGADK----------TLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       386 ~g~~eiv~~LL~~Gadi----------~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~  437 (439)
                      .|..++|++++.+-...          ...-.-+-||+.+|+..++    +||++.|+..+.
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~Nn----yEil~~Ll~kg~  155 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNN----FEILQCLLTRGH  155 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcc----hHHHHHHHHcCC
Confidence            99999999999874332          1223457899999999999    599999998654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.94  E-value=1.1e-05  Score=88.17  Aligned_cols=128  Identities=19%  Similarity=0.170  Sum_probs=103.6

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCChHHHHHHHcCCHHHHHHH-HHCCCCCCccCCCCCCHH
Q 013643          270 LATATSKKWLPLHSLAASGEFYFVDALLKH-NVDINAVDKDGLTALHKAIIGKKQAVTNYL-LRESANPFVVDEDGATLL  347 (439)
Q Consensus       270 ~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~-gadin~~d~~g~t~L~~Aa~~g~~~iv~~L-L~~ga~v~~~d~~g~TpL  347 (439)
                      .......|++.+|.++..+..-+++.+++- |-.....|.+|...+|+++ .++.+.+-+| +-+|..++.+|..|+|||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCccc
Confidence            344566789999999999998889988886 6556667888888999955 5555555444 457999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCcc------CCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 013643          348 HYAVQTASSPAIKILLLYNVDINL------QDNDGWTPLHLAVQARRTDIVKLLLIK  398 (439)
Q Consensus       348 h~A~~~g~~~iV~~Ll~~gadin~------~d~~G~TpLh~A~~~g~~eiv~~LL~~  398 (439)
                      |+|+..|+..++..|++.|++.+.      .+-.|.|+-.+|..+|+..+.-+|-+.
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999988776443      334699999999999999888888654

>PRK11096 ansB L-asparaginase II; Provisional

Probab=97.89  E-value=1.6e-06  Score=86.67  Aligned_cols=70  Identities=11%  Similarity=0.047  Sum_probs=60.0

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLS  170 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l~  170 (439)
                      .+|+|+++||+||+|.+|.+.+++        |.+|||..|.+...++  ..+.+  .|+|++++|++       |++..
T Consensus       257 ~~GiVl~g~G~Gn~~~~~~~~l~~a~~~GipVV~~Sqc~~G~v~~~~~--~~l~~--~G~I~~g~lt~-------ekAri  325 (347)
T PRK11096        257 YDGIVSAGVGNGNLYKTVFDTLATAAKNGVAVVRSSRVPTGATTQDAE--VDDAK--YGFVASGTLNP-------QKARV  325 (347)
T ss_pred             CCEEEEEeECCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCCcCcccc--cchhh--CCEEECCCCCH-------HHHHH
Confidence            599999999999999988888777        8999999998854432  23455  99999999999       99999


Q ss_pred             ccCCCcccCCC
Q 013643          171 QLNPPLVLDKP  181 (439)
Q Consensus       171 ~l~p~~~l~~~  181 (439)
                      +|+  ++|+..
T Consensus       326 kL~--l~L~~~  334 (347)
T PRK11096        326 LLQ--LALTQT  334 (347)
T ss_pred             HHH--HHHcCC
Confidence            999  999874

>TIGR00520 asnASE_II L-asparaginases, type II

Probab=97.84  E-value=1.7e-06  Score=86.50  Aligned_cols=66  Identities=17%  Similarity=0.173  Sum_probs=57.6

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLS  170 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l~  170 (439)
                      .+|+|+++||.||+|..|.+.+++        |.+|||..|.|...+..        .|+|++++|++       |++..
T Consensus       263 ~~GlVl~g~G~Gn~p~~~~~al~~a~~~GipVV~~Sr~~~G~v~~~~~~--------~G~i~ag~Ltp-------ekAri  327 (349)
T TIGR00520       263 AKGIVLAGVGNGSLSAAGLKVNETAAKLGVPIVRSSRVPDGMVTPDAEP--------DGFIASGYLNP-------QKARV  327 (349)
T ss_pred             CCEEEEEeECCCCCCHHHHHHHHHHHHCCCEEEEEccCCCCccCCCccc--------cCeEECCCCCH-------HHHHH
Confidence            499999999999999988887777        89999999988533211        89999999999       99999


Q ss_pred             ccCCCcccCCC
Q 013643          171 QLNPPLVLDKP  181 (439)
Q Consensus       171 ~l~p~~~l~~~  181 (439)
                      +|+  ++|++.
T Consensus       328 kL~--~~L~~~  336 (349)
T TIGR00520       328 LLQ--LALTKT  336 (349)
T ss_pred             HHH--HHHhCC
Confidence            999  999875

Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.

>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=2.9e-06  Score=84.54  Aligned_cols=73  Identities=15%  Similarity=0.080  Sum_probs=66.3

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL  169 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l  169 (439)
                      .||+|++++|.||+|..+.+..++        |..|||..|.|. ..|..|+.+.+  +|+|++++|++       |.+.
T Consensus       255 ~~GiVie~~G~G~~~~~~~~~i~~~~~~gi~VV~sSr~~~G~v~~~~y~~g~~l~~--~G~I~a~~l~p-------ekAr  325 (351)
T COG0252         255 AKGLVLEGTGSGNVTPALIESIERASKRGIPVVYSSRCLSGRVNYGVYGTGNDLAP--AGAIGAGDLNP-------EKAR  325 (351)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHHCCCeEEEEeccCCCcccccccccccchhh--CCceEcCCcCH-------HHHH
Confidence            599999999999999988887777        789999999996 45899999999  99999999999       9999


Q ss_pred             hccCCCcccCCCC
Q 013643          170 SQLNPPLVLDKPS  182 (439)
Q Consensus       170 ~~l~p~~~l~~~~  182 (439)
                      .+|+  ++|.+..
T Consensus       326 vkLm--~aL~~~~  336 (351)
T COG0252         326 VLLM--LALGNGL  336 (351)
T ss_pred             HHHH--HHHHcCC
Confidence            9999  9988753

>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]

Probab=97.55  E-value=1.2e-05  Score=78.39  Aligned_cols=75  Identities=19%  Similarity=0.124  Sum_probs=64.0

Q ss_pred             CCcccccccccCCCchhHHHHHHH---------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE---------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL  169 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~---------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l  169 (439)
                      .||+|++++|+|+.|++-.++..|         |-.-||..|-|...|+.        .|+|++++|++       |++.
T Consensus       277 ~kGlVL~s~Gag~~~~~~~~~~~~L~~~~~~~vv~~~~~~~G~v~~~~~p--------~~~Ips~ylsP-------ekA~  341 (368)
T KOG0503|consen  277 AKGLVLASSGAGSWPTNRSDVIDELPEAYARPVVYSNRCADGFVDNDYAP--------VGAIPSGYLSP-------EKAR  341 (368)
T ss_pred             CceEEEEeccCCCCCCcchhHHHHhHHHhccCceeeccccCCcccccccc--------cccccccccCH-------HHHH
Confidence            499999999999999876666666         22339999999888876        78999999999       9999


Q ss_pred             hccCCCcccCCCCCCCcccccc
Q 013643          170 SQLNPPLVLDKPSTFPTDAKES  191 (439)
Q Consensus       170 ~~l~p~~~l~~~~s~~~~~k~~  191 (439)
                      +.|+  |++.++. |+..++++
T Consensus       342 ~lL~--l~l~~~~-~sl~~i~~  360 (368)
T KOG0503|consen  342 ILLS--LALGKGY-TSLSEIRS  360 (368)
T ss_pred             HHHH--hhHhCCc-cchHHHHH
Confidence            9999  9999998 88777766

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.20  E-value=0.00066  Score=68.83  Aligned_cols=62  Identities=29%  Similarity=0.282  Sum_probs=54.2

Q ss_pred             HHHHHHHHhCCCCCccC------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 013643          356 SPAIKILLLYNVDINLQ------DNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCL  417 (439)
Q Consensus       356 ~~iV~~Ll~~gadin~~------d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~  417 (439)
                      ...|++|.+++++.|..      +..--|+||+|+..|.-++|.+||+.|+|+.++|..|+||++++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            67889999998877643      334559999999999999999999999999999999999999887

>smart00248 ANK ankyrin repeats

Probab=96.81  E-value=0.0023  Score=37.81  Aligned_cols=28  Identities=57%  Similarity=0.796  Sum_probs=18.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 013643          376 GWTPLHLAVQARRTDIVKLLLIKGADKT  403 (439)
Q Consensus       376 G~TpLh~A~~~g~~eiv~~LL~~Gadi~  403 (439)
                      |.||+|+|+..++.+++++|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5666777766677777777766666543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.31  E-value=0.0067  Score=61.80  Aligned_cols=71  Identities=23%  Similarity=0.299  Sum_probs=57.7

Q ss_pred             HHHHHHHHHCCCCCCc------cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 013643          323 QAVTNYLLRESANPFV------VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL  396 (439)
Q Consensus       323 ~~iv~~LL~~ga~v~~------~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL  396 (439)
                      ...+.+|.+++.+.|.      .+.--.|+||+|+.+|...+|.+||+.|+|+..+|..|+||..++.   +.+|=..++
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFI  480 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHH
Confidence            5678889888877653      2444679999999999999999999999999999999999999886   445444444

>smart00248 ANK ankyrin repeats

Probab=96.28  E-value=0.0081  Score=35.32  Aligned_cols=27  Identities=37%  Similarity=0.495  Sum_probs=14.8

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCC
Q 013643          343 GATLLHYAVQTASSPAIKILLLYNVDI  369 (439)
Q Consensus       343 g~TpLh~A~~~g~~~iV~~Ll~~gadi  369 (439)
                      |.|++|+|+..++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            445555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.32  E-value=0.11  Score=46.75  Aligned_cols=138  Identities=9%  Similarity=0.019  Sum_probs=94.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH
Q 013643          279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPA  358 (439)
Q Consensus       279 tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~i  358 (439)
                      -.+..|+..+.+.+++..-+...+-   -...++.+-.||+..+.++|+|+-++   ....  +-.+-...|......++
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qn---L~i~--~~~~iFdIA~~~kDlsL  119 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQN---LHIY--NPEDIFDIAFAKKDLSL  119 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhc---cCCC--CchhhhhhhhhccchhH
Confidence            3566888999999998887654321   24567899999999999999998332   2212  22345667887777665


Q ss_pred             H----HHHHhCCCCCccCCCC--CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHH
Q 013643          359 I----KILLLYNVDINLQDND--GWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL  432 (439)
Q Consensus       359 V----~~Ll~~gadin~~d~~--G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L  432 (439)
                      .    .+++.+...-...|..  -.--|.+|+..|-...+.-.+++|.+++.      ++|..|+...|.    .|+.++
T Consensus       120 yslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhR----kIL~yf  189 (192)
T PF03158_consen  120 YSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHR----KILDYF  189 (192)
T ss_pred             HHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHH----HHHHHh
Confidence            2    2233332111011100  01346789999999999999999988764      799999999995    899988


Q ss_pred             hc
Q 013643          433 KQ  434 (439)
Q Consensus       433 ~~  434 (439)
                      +.
T Consensus       190 i~  191 (192)
T PF03158_consen  190 IR  191 (192)
T ss_pred             hc
Confidence            64

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.94  E-value=0.21  Score=46.42  Aligned_cols=113  Identities=25%  Similarity=0.304  Sum_probs=63.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCC----CCCCHHHHHHH--c
Q 013643          280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDE----DGATLLHYAVQ--T  353 (439)
Q Consensus       280 pLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~----~g~TpLh~A~~--~  353 (439)
                      .|--|+...+++-+.-++...       ..-.+++.+|+-.+..+++-+|+.+- +....|-    .+.--+-++..  .
T Consensus       156 sledAV~AsN~~~i~~~VtdK-------kdA~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~  227 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK-------KDAHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHS  227 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch-------HHHHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcC
Confidence            455666666666665555421       12246777777777777777777641 1111111    11112223222  2


Q ss_pred             CCHHHHHHHHhCC-CCCccC---CCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 013643          354 ASSPAIKILLLYN-VDINLQ---DNDGWTPLHLAVQARRTDIVKLLLIKGA  400 (439)
Q Consensus       354 g~~~iV~~Ll~~g-adin~~---d~~G~TpLh~A~~~g~~eiv~~LL~~Ga  400 (439)
                      .+..++++.+..| +++|.+   -+.|.|.|.-|++.++.+++.+||++||
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            3456666777665 455543   3467777777777777777777777776

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=90.73  E-value=1.2  Score=41.62  Aligned_cols=91  Identities=16%  Similarity=0.156  Sum_probs=65.8

Q ss_pred             chHHHHHHHcCCHHHHHHHHhCC----CCCcccCCCCChHHHHHHH--cCCHHHHHHHHHCCC-CCCc---cCCCCCCHH
Q 013643          278 WLPLHSLAASGEFYFVDALLKHN----VDINAVDKDGLTALHKAII--GKKQAVTNYLLRESA-NPFV---VDEDGATLL  347 (439)
Q Consensus       278 ~tpLh~Aa~~g~~eivk~LL~~g----adin~~d~~g~t~L~~Aa~--~g~~~iv~~LL~~ga-~v~~---~d~~g~TpL  347 (439)
                      .++|.+|+..+..+++.+|+.+-    -|+-.. ..+.--+.++..  +.+..++++++.+|. ++|.   +-..|.|-|
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~-~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtML  258 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM-EKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTML  258 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhc-CcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHH
Confidence            36788888888889999999752    111111 113334555554  346788999999874 5553   456899999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCC
Q 013643          348 HYAVQTASSPAIKILLLYNVDI  369 (439)
Q Consensus       348 h~A~~~g~~~iV~~Ll~~gadi  369 (439)
                      .-|+..++.+++.+|+++||-.
T Consensus       259 DNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  259 DNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HhHHhcCcHHHHHHHHHcCccc
Confidence            9999999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=90.71  E-value=0.92  Score=40.97  Aligned_cols=136  Identities=10%  Similarity=0.067  Sum_probs=90.6

Q ss_pred             HHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHHHhC
Q 013643          220 KWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKH  299 (439)
Q Consensus       220 l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~  299 (439)
                      +.-|+..+-..|.+..-+...+-                               -...++.+-.||+..+.|+|+|+-..
T Consensus        50 l~HAVk~nmL~ILqkyke~L~~~-------------------------------~~~~q~LFElAC~~qkydiV~WI~qn   98 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDLENE-------------------------------RYLNQELFELACEEQKYDIVKWIGQN   98 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHhhcc-------------------------------hhHHHHHHHHHHHHccccHHHHHhhc
Confidence            56777778777777775432111                               01234567799999999999999432


Q ss_pred             CCCCcccCCCCChHHHHHHHcCCHHHH----HHHHHCCCCCCccCC--CCCCHHHHHHHcCCHHHHHHHHhCCCCCccCC
Q 013643          300 NVDINAVDKDGLTALHKAIIGKKQAVT----NYLLRESANPFVVDE--DGATLLHYAVQTASSPAIKILLLYNVDINLQD  373 (439)
Q Consensus       300 gadin~~d~~g~t~L~~Aa~~g~~~iv----~~LL~~ga~v~~~d~--~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d  373 (439)
                         ...  .+-.+.+..|...++.++.    .+++.+...-+..|.  --..-|..|+..|....|.-.+++|-+++.  
T Consensus        99 ---L~i--~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~--  171 (192)
T PF03158_consen   99 ---LHI--YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI--  171 (192)
T ss_pred             ---cCC--CCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH--
Confidence               211  2234567788888887763    233333222111111  011356789999999999999999987774  


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH
Q 013643          374 NDGWTPLHLAVQARRTDIVKLLLI  397 (439)
Q Consensus       374 ~~G~TpLh~A~~~g~~eiv~~LL~  397 (439)
                          ++|..|+..++..|+.+++.
T Consensus       172 ----~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  172 ----IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             ----HHHHHHHHhhHHHHHHHhhc
Confidence                79999999999999999874

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.12  E-value=1.1  Score=34.50  Aligned_cols=47  Identities=21%  Similarity=0.358  Sum_probs=31.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHC
Q 013643          279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRE  332 (439)
Q Consensus       279 tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~  332 (439)
                      ..+..|+.+|+.|+++.+++.+ .++      ...+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3566777777777777777654 211      2457777777777777777765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=87.62  E-value=0.95  Score=34.79  Aligned_cols=44  Identities=25%  Similarity=0.311  Sum_probs=20.9

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 013643          347 LHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI  397 (439)
Q Consensus       347 Lh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~  397 (439)
                      +.+|+..|+.++++.+++.+ .++      ...+..|+...+.++++||++
T Consensus        10 l~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen   10 LEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHH
Confidence            44555555555555555432 111      234555555555555555554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	439
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-22
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-09
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-22
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-21
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-20
1uoh_A	226	Human Gankyrin Length = 226		6e-20
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		6e-20
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-19
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-19
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		6e-18
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-10
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-17
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-10
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		6e-17
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-16
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-16
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		7e-16
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-09
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-15
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		6e-15
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-07
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		4e-14
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		5e-14
3so8_A	162	Crystal Structure Of Ankra Length = 162		5e-14
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-14
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-13
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-06
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		5e-13
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-13
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		8e-13
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-05
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-12
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-12
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		5e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-12
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-12
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-12
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-12
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-12
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-12
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-12
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-12
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-08
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		5e-12
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-11
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-11
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-11
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-11
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-11
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-11
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		4e-11
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-10
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-10
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		3e-10
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		3e-10
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-09
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		3e-09
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-09
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		6e-09
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		6e-09
1ycs_B	239	P53-53bp2 Complex Length = 239		7e-09
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		7e-09
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		7e-09
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		7e-09
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		8e-09
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-08
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-08
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-08
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-08
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		2e-08
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-08
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		8e-04
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-08
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-08
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		3e-08
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		3e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		4e-08
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		4e-08
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-08
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		5e-08
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		6e-08
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		7e-08
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-05
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		1e-07
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-07
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-05
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-07
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		3e-07
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		4e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		4e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		4e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		5e-07
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		5e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		6e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-04
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		1e-06
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		2e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		5e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		2e-06
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		2e-06
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-06
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		6e-06
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		7e-06
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		8e-06
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-05
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		2e-05
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		2e-05
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		2e-05
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		5e-05
3deo_A	183	Structural Basis For Specific Substrate Recognition		6e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		5e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		7e-04

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G    V  LL++  D NA D DG T LH A     + +   LL + A+P   D DG 
Sbjct: 12  AENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR 71
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LHYA +      +K+LL    D N +D+DG TPLH A +    +IVKLLL KGAD   
Sbjct: 72  TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNT 131
Query: 405 KNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434
            + DG TPLDL    G +     ++KLL++
Sbjct: 132 SDSDGRTPLDLAREHGNEE----IVKLLEK 157

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +  +   +K LL    D N  D+DG TPLH A +    +IVKLLL KGAD   K+ DG
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 410 LTPLDLCLYSGRDTRTFGMIKLL 432
            TPL     +G       ++KLL
Sbjct: 71  RTPLHYAAENGHKE----IVKLL 89

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G    V  LL++  D+NA D DG T LH A     + V   LL + A+P   D DG 
Sbjct: 12  AENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK 71
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A +      +K+LL    D N +D+DG TPLHLA +    ++VKLLL +GAD   
Sbjct: 72  TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNT 131
Query: 405 KNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434
            + DG TPLDL    G +     ++KLL++
Sbjct: 132 SDSDGRTPLDLAREHGNEE----VVKLLEK 157

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G    V  L+++  D+NA D DG T LH A     + V   L+ + A+    D DG 
Sbjct: 12  AENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR 71
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH+A +      +K+L+    D+N +D+DG TPLH A +    ++VKLL+ KGAD   
Sbjct: 72  TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT 131
Query: 405 KNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434
            + DG TPLDL    G +     ++KLL++
Sbjct: 132 SDSDGRTPLDLAREHGNEE----VVKLLEK 157

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G    V  L+++  D+NA D DG T LH A     + +   L+ + A+    D DG 
Sbjct: 12  AENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR 71
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LHYA +      +K+L+    D+N +D+DG TPLH A +    +IVKLL+ KGAD   
Sbjct: 72  TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNT 131
Query: 405 KNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434
            + DG TPLDL    G +     ++KLL++
Sbjct: 132 SDSDGRTPLDLAREHGNEE----IVKLLEK 157

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 73/138 (52%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           W PLH  A++G    V ALL     +NAV+++G T LH A    +  +   LL   ANP 
Sbjct: 74  WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
             D   AT +H A    +   I ILL Y    N+QD +G TPLHLA    R +  KLL+ 
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 193
Query: 398 KGADKTLKNRDGLTPLDL 415
           +GA   ++N++  TPL +
Sbjct: 194 QGASIYIENKEEKTPLQV 211

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 73/138 (52%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           W PLH  A++G    V ALL     +NAV+++G T LH A    +  +   LL   ANP 
Sbjct: 75  WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
             D   AT +H A    +   I ILL Y    N+QD +G TPLHLA    R +  KLL+ 
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 194
Query: 398 KGADKTLKNRDGLTPLDL 415
           +GA   ++N++  TPL +
Sbjct: 195 QGASIYIENKEEKTPLQV 212

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 72/138 (52%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           W PLH  A++G    V ALL     +NAV+++G T LH A    +  +   LL   ANP 
Sbjct: 74  WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
             D   AT +H A    +   + ILL Y    N+QD +G TPLHLA    R +  K L+ 
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 398 KGADKTLKNRDGLTPLDL 415
           +GA   ++N++  TPL +
Sbjct: 194 QGASIYIENKEEKTPLQV 211

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 72/138 (52%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           W PLH  A++G    V ALL     +NAV+++G T LH A    +  +   LL   ANP 
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
             D   AT +H A    +   + ILL Y    N+QD +G TPLHLA    R +  K L+ 
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 398 KGADKTLKNRDGLTPLDL 415
           +GA   ++N++  TPL +
Sbjct: 194 QGASIYIENKEEKTPLQV 211

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 76/138 (55%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NA DKDG T LH A       +   LL+  A+    D+DG 
Sbjct: 10  ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 69
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A +      +++LL    D+N +D DG+TPLHLA +    +IV++LL  GAD   
Sbjct: 70  TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Query: 405 KNRDGLTPLDLCLYSGRD 422
           +++ G TP DL +  G +
Sbjct: 130 QDKFGKTPFDLAIREGHE 147

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +      ++IL+    D+N +D DG+TPLHLA +    +IV++LL  GAD   K++DG
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 410 LTPLDLCLYSGR 421
            TPL L    G 
Sbjct: 69  YTPLHLAAREGH 80

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 77/138 (55%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NA DKDG T LH A       +   LL+  A+    D+DG 
Sbjct: 10  ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 69
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A +      +++LL    D+N +D DG+TPLHLA +    +IV++LL  GAD   
Sbjct: 70  TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Query: 405 KNRDGLTPLDLCLYSGRD 422
           +++ G TP DL + +G +
Sbjct: 130 QDKFGKTPFDLAIDNGNE 147

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +      ++IL+    D+N +D DG+TPLHLA +    +IV++LL  GAD   K++DG
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 410 LTPLDLCLYSGR 421
            TPL L    G 
Sbjct: 69  YTPLHLAAREGH 80

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 75/138 (54%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           AA+G+   V  L+ +  D+NA D +GLT LH A    +  +   LL+  A+    D  G 
Sbjct: 14  AAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGI 73
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A        +++LL +  D+N  D  GWTPLHLA  + + +IV++LL  GAD   
Sbjct: 74  TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNA 133
Query: 405 KNRDGLTPLDLCLYSGRD 422
           ++  GLT  D+ +  G++
Sbjct: 134 QDALGLTAFDISINQGQE 151

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 71/151 (47%)
Query: 271 ATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLL 330
           A  T K + PLH  A  G+    + LL+ +   NA  K+GLT LH A+      +   LL
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 199
Query: 331 RESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTD 390
               +P     +G T LH A +       + LL Y    N +   G TPLHLA Q    +
Sbjct: 200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 259
Query: 391 IVKLLLIKGADKTLKNRDGLTPLDLCLYSGR 421
           +V LLL K A+  L N+ GLTPL L    G 
Sbjct: 260 MVALLLSKQANGNLGNKSGLTPLHLVAQEGH 290

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 75/136 (55%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NA DKDG T LH A       +   LL+  A+    D+DG 
Sbjct: 22  ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A +      +++LL    D+N +D DG+TPLHLA +    +IV++LL  GAD   
Sbjct: 82  TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 141
Query: 405 KNRDGLTPLDLCLYSG 420
           +++ G T  D+ + +G
Sbjct: 142 QDKFGKTAFDISIDNG 157

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +      ++IL+    D+N +D DG+TPLHLA +    +IV++LL  GAD   K++DG
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 410 LTPLDLCLYSGR 421
            TPL L    G 
Sbjct: 81  YTPLHLAAREGH 92

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 73/138 (52%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NA D DG T LH A       +   LL+  A+    D  G 
Sbjct: 22  ARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGI 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A  T     +++LL +  D+N  DNDG TPLHLA +    +IV++LL  GAD   
Sbjct: 82  TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
           +++ G T  D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +      ++IL+    D+N  DNDG+TPLHLA      +IV++LL  GAD    +  G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 410 LTPLDLCLYSGR 421
           +TPL L   +G 
Sbjct: 81  ITPLHLAAATGH 92

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 64/121 (52%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH  A +G    V  LL+   D+NA DK+G T LH A       V   LL   A+    
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           D++G T LH A +      +K+LL    D+N +D +G TPLHLA +    ++VKLLL  G
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Query: 400 A 400
           A
Sbjct: 125 A 125

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 72/138 (52%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NAVD  GLT LH A +     +   LL+  A+    D  G 
Sbjct: 22  ARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGF 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A  T     +++LL Y  D+N  D  G TPLHLA      +IV++LL  GAD   
Sbjct: 82  TPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
           +++ G T  D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +      ++IL+    D+N  DN G TPLHLA  +   +IV++LL  GAD    +  G
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 410 LTPLDLCLYSGR 421
            TPL L   +G 
Sbjct: 81  FTPLHLAAMTGH 92

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 72/142 (50%)
Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
           L +H LAA GE  ++   ++    IN  D++G T L  A    + AV  +LL+  A+P +
Sbjct: 21  LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 80
Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
           + +   + L  A     +  +K+LL   VD+N  D +G TPL  AV       VK+LL  
Sbjct: 81  LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 140
Query: 399 GADKTLKNRDGLTPLDLCLYSG 420
           GAD T++   G   +DL +  G
Sbjct: 141 GADPTIETDSGYNSMDLAVALG 162

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
           L +H LAA GE  ++   ++    IN  D++G T L  A    + AV  +LL+  A+P +
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64
Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
           + +   + L  A     +  +K+LL   VD+N  D +G TPL  AV       VK+LL  
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124
Query: 399 GADKTLKNRDGLTPLDLCLYSG-RDTRTFGMIKLLKQLPTSK 439
           GAD T++   G   +DL +  G R  +      LLK L   K
Sbjct: 125 GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 72/142 (50%)
Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
           L +H LAA GE  ++   ++    IN  D++G T L  A    + AV  +LL+  A+P +
Sbjct: 3   LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 62
Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
           + +   + L  A     +  +K+LL   VD+N  D +G TPL  AV       VK+LL  
Sbjct: 63  LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 122
Query: 399 GADKTLKNRDGLTPLDLCLYSG 420
           GAD T++   G   +DL +  G
Sbjct: 123 GADPTIETDSGYNSMDLAVALG 144

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 70/138 (50%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NA D  G T LH A       +   LL+  A+    D DG 
Sbjct: 22  ARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGW 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A        +++LL Y  D+N QD  G TPLHLA      +IV++LL  GAD   
Sbjct: 82  TPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
           +++ G T  D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +      ++IL+    D+N  D+ G TPLHLA      +IV++LL  GAD   ++ DG
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 410 LTPLDLCLYSGR 421
            TPL L   +G 
Sbjct: 81  WTPLHLAADNGH 92

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 73/138 (52%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NA D  G+T LH  +      +   LL+ +A+    D+ G 
Sbjct: 22  ARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGW 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A        +++LL Y  D+N  D  G+TPLHLA +    +IV++LL  GAD   
Sbjct: 82  TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
           +++ G T  D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +      ++IL+    D+N  D  G TPLHL V     +I+++LL   AD    ++ G
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 410 LTPLDLCLYSGR 421
            TPL L  Y G 
Sbjct: 81  WTPLHLAAYRGH 92

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 71/138 (51%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NA D  G T LH A I     +   LL+  A+    D+ G 
Sbjct: 22  ARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGD 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A        +++LL    D+N  D  G+TPLHLA  A   +IV++LL  GAD   
Sbjct: 82  TPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
           +++ G T  D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +      ++IL+    D+N +D+ G TPLHLA      +IV++LL  GAD    ++ G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 410 LTPLDLCLYSGR 421
            TPL L    G 
Sbjct: 81  DTPLHLAALYGH 92

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 6/159 (3%)
Query: 263 LNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKK 322
           +N K+ H       K  PLH+ A +G       L++   +I+   +D  T L +A     
Sbjct: 2   MNFKMEH-----QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNH 56
Query: 323 QAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYN-VDINLQDNDGWTPLH 381
                YL++  A     D +G+T LH A +      ++ LL    +D+N QD+ GWTP+ 
Sbjct: 57  LEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116
Query: 382 LAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG 420
            A + +  D+VKLLL KG+D  +++ +    L    +SG
Sbjct: 117 WATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG 155

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 71/138 (51%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NA D  GLT LH A       +   LL+  A+   +D  G+
Sbjct: 22  ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A        +++LL +  D+N  D  G TPLHLA      +IV++LL  GAD   
Sbjct: 82  TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
           +++ G T  D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 35/72 (48%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +      ++IL+    D+N  D  G TPLHLA      +IV++LL  GAD    +  G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 410 LTPLDLCLYSGR 421
            TPL L    G 
Sbjct: 81  STPLHLAALIGH 92

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NA D  G T LH A       +   LL+  A+    D  G 
Sbjct: 22  ARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGY 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A        +++LL    D+N  D+DG TPLHLA +    +IV++LL  GAD   
Sbjct: 82  TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
           +++ G T  D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +      ++IL+    D+N  DN G TPLHLA  +   +IV++LL  GAD    +  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 410 LTPLDLCLYSGR 421
            TPL L  Y G 
Sbjct: 81  YTPLHLAAYWGH 92

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 71/138 (51%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NA D  GLT LH A       +   LL+  A+   +D  G+
Sbjct: 22  ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A        +++LL +  D+N  D  G TPLHLA      +IV++LL  GAD   
Sbjct: 82  TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
           +++ G T  D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 35/72 (48%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +      ++IL+    D+N  D  G TPLHLA      +IV++LL  GAD    +  G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 410 LTPLDLCLYSGR 421
            TPL L    G 
Sbjct: 81  STPLHLAALIGH 92

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 69/138 (50%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D NA D  G T LH A       +   LLR  A+   VD +G 
Sbjct: 10  ARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT 69
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A        +++LL Y  D+N +D  G TPL+LA      +IV++LL  GAD   
Sbjct: 70  TPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNA 129
Query: 405 KNRDGLTPLDLCLYSGRD 422
           +++ G T  D+ +  G +
Sbjct: 130 QDKFGKTAFDISIDIGNE 147

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +      ++IL+    D N  D+ G TPLH+A      +IV++LL  GAD    + +G
Sbjct: 9   AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 410 LTPLDLCLYSGR 421
            TPL L    G 
Sbjct: 69  TTPLHLAASLGH 80

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 281 LHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           L   AA G+   V  LL    V  +A+++ G TAL   + G   A+   LL++ A+P V 
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST-AIALELLKQGASPNVQ 64
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           D  G + +H A +T     +K+L+ +  D+N+ D  G  P+HLAVQ   T +V  L    
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL---A 121
Query: 400 ADKTLKNRD--GLTPLDLCLYSG 420
           A+  L  RD  GLTPL+L L  G
Sbjct: 122 AESDLHRRDARGLTPLELALQRG 144

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 281 LHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           L   AA G+   V  LL    V  +A+++ G TAL   + G   A+   LL++ A+P V 
Sbjct: 12  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST-AIALELLKQGASPNVQ 70
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           D  G + +H A +T     +K+L+ +  D+N+ D  G  P+HLAVQ   T +V  L    
Sbjct: 71  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL---A 127
Query: 400 ADKTLKNRD--GLTPLDLCLYSG 420
           A+  L  RD  GLTPL+L L  G
Sbjct: 128 AESDLHRRDARGLTPLELALQRG 150

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 72/138 (52%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NA D  G T LH A       +   LL+  A+    D  GA
Sbjct: 22  ARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGA 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A        +++LL +  D+N +D +G+TPLHLA      +IV++LL  GAD   
Sbjct: 82  TPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
           +++ G T  D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +      ++IL+    D+N  D  G TPLHLA +    +IV++LL  GAD    +  G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 410 LTPLDLCLYSGR 421
            TPL L   +G 
Sbjct: 81  ATPLHLAADNGH 92

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 70/138 (50%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NA D  G T LH A       +   LL+  A+    D  G 
Sbjct: 22  ARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A        +++LL    D+N  D++G+TPLHLA      +IV++LL  GAD   
Sbjct: 82  TPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
           +++ G T  D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +      ++IL+    D+N  D+ GWTPLHLA      +IV++LL  GAD    +  G
Sbjct: 21  AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 410 LTPLDLCLYSGR 421
           +TPL L    G 
Sbjct: 81  VTPLHLAADRGH 92

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 71/138 (51%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NA D  G T LH A       +   LL+  A+   +D  G+
Sbjct: 22  ARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGS 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A +      +++LL Y  D+N  D  G TPLHLA      +IV++LL  GAD   
Sbjct: 82  TPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
           +++ G T  D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +      ++IL+    D+N +D  G TPLHLA +    +IV++LL  GAD    +  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 410 LTPLDLCLYSGR 421
            TPL L    G 
Sbjct: 81  STPLHLAAKRGH 92

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 67/130 (51%)
Query: 293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQ 352
           V  L+ +  D+NA D  G T LH A       +   LL+  A+    D  G+T LH A  
Sbjct: 30  VRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAH 89
Query: 353 TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTP 412
                 +++LL    D+N +D++G TPLHLA      +IV++LL  GAD   +++ G T 
Sbjct: 90  FGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 413 LDLCLYSGRD 422
            D+ + +G +
Sbjct: 150 FDISINNGNE 159

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 71/138 (51%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NA D  G T LH A       +   LL+  A+    D  G 
Sbjct: 22  ARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGV 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A +      +++LL    D+N  D+ G+TPLHLA +    +IV++LL  GAD   
Sbjct: 82  TPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
           +++ G T  D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
           A +      ++IL+    D+N +D  GWTPLHLA      +IV++LL  GAD   K+  G
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 410 LTPLDLCLYSGR 421
           +TPL L    G 
Sbjct: 81  VTPLHLAARRGH 92

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 64/130 (49%)
Query: 293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQ 352
           V  L+ +  D+NA D  G T LH A       +   LL+  A+   VD  G T L  A  
Sbjct: 30  VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89
Query: 353 TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTP 412
                 +++LL    D+N  D +G TPLHLA      +IV++LL  GAD   +++ G T 
Sbjct: 90  FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA 149
Query: 413 LDLCLYSGRD 422
            D+ + +G +
Sbjct: 150 FDISIDNGNE 159

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH     G    V  L+K+  D + +D +G + +H A      ++  YL+ +  +  ++
Sbjct: 79  PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 340 DEDGAT-LLHYAVQTASSPAIKILLLYNVDINLQDN-DGWTPLHLAVQARRTDIVKLLLI 397
           D++G T L+  A +T S    ++LL +NV +NL D     T LH AV A  T ++ LLL 
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198
Query: 398 KGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTSK 439
            GA+   +N  G + LDL     +  +   MI  L++   +K
Sbjct: 199 AGANVDAQNIKGESALDLA----KQRKNVWMINHLQEARQAK 236

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Query: 279 LPLHSLAASGEF-YFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           L +H LAA GE     + L K +  +N  D+ G T L  A    +     +LL   A+P 
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
           ++ ++  + L  A     +  + +LL  +VDIN+ D +G TPL  AV+      V+ LL 
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123
Query: 398 KGADKTLKNRDGLTPLDLCLYSG 420
           +GAD T +   G TP+DL +  G
Sbjct: 124 RGADLTTEADSGYTPMDLAVALG 146

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Query: 279 LPLHSLAASGEF-YFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           L +H LAA GE     + L K +  +N  D+ G T L  A    +     +LL   A+P 
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
           ++ ++  + L  A     +  + +LL  +VDIN+ D +G TPL  AV       V+ LL 
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLA 123
Query: 398 KGADKTLKNRDGLTPLDLCLYSG 420
           +GAD T +   G TP+DL +  G
Sbjct: 124 RGADLTTEADSGYTPMDLAVALG 146

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 303 INAVDKDGL--TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIK 360
           +N  D +G   T LH A    + +V  YLL+  A+    D+ G   LH A         +
Sbjct: 33  VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 92
Query: 361 ILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
           +L+ +   +N+ D   +TPLH A    + +I KLLL  GAD T KNRDG TPLDL
Sbjct: 93  LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 54/94 (57%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
           L+   A+   +DEDG T LH A Q      +++LL Y  D+N +DN G TPLHLA     
Sbjct: 33  LMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGH 92
Query: 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
            +IV++LL  GAD   +++ G T  D+ + +G +
Sbjct: 93  LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 303 INAVDKDGL--TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIK 360
           +N  D +G   T LH A    + +V  YLL+  A+    D+ G   LH A         +
Sbjct: 35  VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 94
Query: 361 ILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
           +L+ +   +N+ D   +TPLH A    + +I KLLL  GAD T KNRDG TPLDL
Sbjct: 95  LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 303 INAVDKDGL--TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIK 360
           +N  D +G   T LH A    + +V  YLL+  A+    D+ G   LH A         +
Sbjct: 37  VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 96
Query: 361 ILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
           +L+ +   +N+ D   +TPLH A    + +I KLLL  GAD T KNRDG TPLDL
Sbjct: 97  LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 151

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH  A  G    +  LLKH  +  A + D    LH A       V   LL  +A P   
Sbjct: 89  PLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK 148
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           D  G T L YA        + +LL +   IN  +N G T LH AV  +   +V+LLL+ G
Sbjct: 149 DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG 208
Query: 400 ADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS 438
           A   + N+   T +D    + +      +++LL+ +P+ 
Sbjct: 209 ASVQVLNKRQRTAVDCAEQNSK------IMELLQVVPSC 241

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGM 428
           +N+   DG +PLH+A    R D++ LLL  GA+   +N D   PL L    G     F +
Sbjct: 79  VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGH----FQV 134
Query: 429 IKLL 432
           +K L
Sbjct: 135 VKCL 138

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/80 (43%), Positives = 47/80 (58%)
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
           +DG T LH A +   +  +K LL    D+N +  DG TPLHLA +    +IVKLLL KGA
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 401 DKTLKNRDGLTPLDLCLYSG 420
           D   +++DG TP  L   +G
Sbjct: 67  DVNARSKDGNTPEHLAKKNG 86

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 342 DGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD 401
           +G T LH A +      +K+LL    D+N +D +G TPLHLA +    ++VKLLL  GAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 402 KTLKNRDGLTPLDLCLYSG 420
              K+++G TPL L   +G
Sbjct: 61  VNAKDKNGRTPLHLAARNG 79

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 281 LHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           L   AA G+   V  LL    V  +A+++ G TAL   + G   AV   LL++ A+P V 
Sbjct: 14  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSP-AVALELLKQGASPNVQ 72
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           D  G + +H A +T     +K+L+ +  D+N  D+ G  P+HLA++   + +V  L    
Sbjct: 73  DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL---A 129
Query: 400 ADKTLKNRD--GLTPLDLCLYSG 420
            +  L +RD  GLTPL+L    G
Sbjct: 130 PESDLHHRDASGLTPLELARQRG 152

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 281 LHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           L   AA G+   V  LL    V  +A+++ G TAL   + G   AV   LL++ A+P V 
Sbjct: 12  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSP-AVALELLKQGASPNVQ 70
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           D  G + +H A +T     +K+L+ +  D+N  D+ G  P+HLA++   + +V  L    
Sbjct: 71  DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL---A 127
Query: 400 ADKTLKNRD--GLTPLDLCLYSG 420
            +  L +RD  GLTPL+L    G
Sbjct: 128 PESDLHHRDASGLTPLELARQRG 150

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV---VDE 341
           A +G    +   L    D+N  D  G TA  +A +  K     +L +  AN  +     E
Sbjct: 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 159
Query: 342 D-------GATLLHYAVQTASSPAIKILL-LYNVDINLQDNDGWTPL-HLAVQARRTD-- 390
           D       GAT L  A +      +KILL     D+N  DN G   L H  + +  +D  
Sbjct: 160 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 219
Query: 391 -IVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMI-KLLKQ 434
            I  LLL  GAD  ++   G TPL L +    + +  G++ +LL+Q
Sbjct: 220 AITHLLLDHGADVNVRGERGKTPLILAV----EKKHLGLVQRLLEQ 261

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV---VDE 341
           A +G    +   L    D+N  D  G TA  +A +  K     +L +  AN  +     E
Sbjct: 80  AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139
Query: 342 D-------GATLLHYAVQTASSPAIKILL-LYNVDINLQDNDGWTPL-HLAVQARRTD-- 390
           D       GAT L  A +      +KILL     D+N  DN G   L H  + +  +D  
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 199
Query: 391 -IVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMI-KLLKQ 434
            I  LLL  GAD  ++   G TPL L +    + +  G++ +LL+Q
Sbjct: 200 AITHLLLDHGADVNVRGERGKTPLILAV----EKKHLGLVQRLLEQ 241

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 27/168 (16%)
Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKA----------------- 317
           ++ W+PLH+ A+ G     + L+     + AV+ +G T L  A                 
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163
Query: 318 --IIGKKQAVTNYLLRES--------ANPFVVDEDGATLLHYAVQTASSPAIKILLLYNV 367
             I   ++     +LR++         N     + G T LH A     +  +K+L+    
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223
Query: 368 DINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
           D+N++D DGWTPLH A    + +  ++L+    D    N+ G T  D+
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV 271

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
           L S AA G+   + +LL++NV++NA +  G TAL    +G  +     LLR  ANP + D
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
             G  ++H A +      ++ LL +  D+N++DN+G  PLHLA +     +V+ L+   A
Sbjct: 68  RTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 401 DKT-LKNRDGLTPLDLCLYSGRD 422
                +N  G T  DL    GR+
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRN 150

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
           ++ E  +P + +++G T LH AV    +  +K L+ + V++N  D+DGWTPLH A     
Sbjct: 56  IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN 115
Query: 389 TDIVKLLLIKGA 400
             + K L+  GA
Sbjct: 116 VQVCKFLVESGA 127

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
           ++ E  +P + +++G T LH AV    +  +K L+ + V++N  D+DGWTPLH A     
Sbjct: 56  IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN 115
Query: 389 TDIVKLLLIKGA 400
             + K L+  GA
Sbjct: 116 VQVCKFLVESGA 127

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNV--DINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
           W P H   + G    V +L    +  D+N +   G+T LH A+  K   V+ +L+   A+
Sbjct: 73  WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 336 PFVVDEDGATLLHYAVQTASSPAIKILL-LYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
             + D+     LH A    S   I++L  L    +N QD  GWTPL  A+     D   L
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 395 LLIK-GADKTLKNRDGLTPLDLCL 417
           L+ K GA+  L +  G    D+ L
Sbjct: 193 LVEKYGAEYDLVDNKGAKAEDVAL 216

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
           L+   A+    D  G T LH A        +++LL +  D+N  DNDG TPLHLA     
Sbjct: 33  LMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGH 92
Query: 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
            +IV++LL  GAD   +++ G T  D+ + +G +
Sbjct: 93  LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNV--DINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
           W P H   + G    V +L    +  D+N +   G+T LH A+  K   V+ +L+   A+
Sbjct: 73  WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 336 PFVVDEDGATLLHYAVQTASSPAIKILL-LYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
             + D+     LH A    S   I++L  L    +N QD  GWTPL  A+     D   L
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 395 LLIK-GADKTLKNRDGLTPLDLCL 417
           L+ K GA+  L +  G    D+ L
Sbjct: 193 LVEKYGAEYDLVDNKGAKAEDVAL 216

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNV--DINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
           W P H   + G    V +L    +  D+N +   G+T LH A+  K   V+ +L+   A+
Sbjct: 73  WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 336 PFVVDEDGATLLHYAVQTASSPAIKILL-LYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
             + D+     LH A    S   I++L  L    +N QD  GWTPL  A+     D   L
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 395 LLIK-GADKTLKNRDGLTPLDLCL 417
           L+ K GA+  L +  G    D+ L
Sbjct: 193 LVEKYGAEYDLVDNKGAKAEDVAL 216

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
           L S AA G+   + +LL++NV++NA +  G TAL    +G  +     LLR  ANP + D
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
             G  ++H A +      ++ LL +  D+N++DN+G  PLHLA +     +V+ L+   A
Sbjct: 68  RTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 401 DKT-LKNRDGLTPLDLCLYSGRD 422
                +N  G T  DL    GR+
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRN 150

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
           L S AA G+   + +LL++NV++NA +  G TAL    +G  +     LLR  ANP + D
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
             G  ++H A +      ++ LL +  D+N++DN+G  PLHLA +     +V+ L+   A
Sbjct: 68  RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 401 DKT-LKNRDGLTPLDLCLYSGRD 422
                +N  G T  DL    GR+
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRN 150

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
           L S AA G+   + +LL++NV++NA +  G TAL    +G  +     LLR  ANP + D
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
             G  ++H A +      ++ LL +  D+N++DN+G  PLHLA +     +V+ L+   A
Sbjct: 68  RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 401 DKT-LKNRDGLTPLDLCLYSGRD 422
                +N  G T  DL    GR+
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRN 150

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 1/138 (0%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           W P+H  A  G    +  L+     +N +  D ++ LH+A +G   +    LL+  A   
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
            V  D  T L  A  + S   + +LL +   +   ++D  +P+H A +    + V  L+ 
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIA 178
Query: 398 KGADKTLKNRDGLTPLDL 415
            G +   K     TPL L
Sbjct: 179 YGGNIDHKISHLGTPLYL 196

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 39/74 (52%)
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
           E G   LHYA        ++ LLL   DIN  D    TPL  AV       VKLLL KGA
Sbjct: 33  EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
Query: 401 DKTLKNRDGLTPLD 414
           DKT+K  DGLT L+
Sbjct: 93  DKTVKGPDGLTALE 106

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 292 FVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYA 350
            +D+     +D+ A + DGLTALH A+  + Q     LL   A+   VD + G + L +A
Sbjct: 98  LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157
Query: 351 VQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGL 410
           V+  S   +++LL +  ++N Q   G + LH A       +V+ L+  GAD +LKN    
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND 217
Query: 411 TPL 413
           TPL
Sbjct: 218 TPL 220

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 340 DEDGATLLHYAVQTASSPAIKILL-LY---NVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
           DEDG T LH AV   + PA+  L+ L+     ++++ +N   TPLHLAV      +V+LL
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 396 LIKGADKTLKNRDGLTPLDL--------CLYSGRDTRTFGMIKL 431
           +  GA     +R G T   L        CL +  D+   G + L
Sbjct: 66  VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL 109

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 54/116 (46%)
Query: 300 NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAI 359
           NV+ +A D    T LH A    +  +   LL+  A+    D+ G   LH A         
Sbjct: 48  NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVT 107
Query: 360 KILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
           ++LL +   +N  D   +TPLH A    R ++  LLL  GAD TL N  G + +D+
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
           L+   A+   +D+ G T LH A +      +++LL +  D+N  D+ G TPLHLA     
Sbjct: 33  LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGH 92
Query: 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
            +IV++LL  GAD   +++ G T  D+ + +G +
Sbjct: 93  LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 1/138 (0%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           W P+H  A  G    +  L+     +N +  D ++ LH+A +G   +    LL+  A   
Sbjct: 4   WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
            V  D  T L  A  + S   + +LL +   +   ++D  +P+H A +    + V  L+ 
Sbjct: 64  GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIA 122
Query: 398 KGADKTLKNRDGLTPLDL 415
            G +   K     TPL L
Sbjct: 123 YGGNIDHKISHLGTPLYL 140

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA-NPFVVDEDGATLLHYAVQTA 354
           LL    D N+ D  G T LH A+      V   LLR  A N      DG T L  A + A
Sbjct: 70  LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
               ++ L+  + DIN  DN G T LH A     T+ V +LL+  A++  ++    TPL 
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 415 LCLYSG 420
           L    G
Sbjct: 190 LAAREG 195

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 50/105 (47%)
Query: 310 GLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDI 369
           G T LH A I        YLL+  ++P V D  G T LH A        +++LL +   +
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 370 NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
           N       +PLH A +    DIVKLLL  GA +   N  GL P+D
Sbjct: 70  NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVD 114

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 38/74 (51%)
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
           E G   LHYA        ++ LLL   DIN  D    TPL  AV       VKLLL KGA
Sbjct: 38  EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Query: 401 DKTLKNRDGLTPLD 414
           DKT+K  DGLT  +
Sbjct: 98  DKTVKGPDGLTAFE 111

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
           L+   A+   +D+ G T LH A +      +++LL +  D+N +D  G TPLHLA     
Sbjct: 33  LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGH 92
Query: 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
            +IV++LL  GAD   +++ G T  D+ + +G +
Sbjct: 93  LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
           L S AA G+   + +LL++NV++NA +  G TAL    +G  +     LLR  ANP + D
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
             G  ++H A +      ++ LL    D+N++DN+G  PLHLA +     +V+ L+   A
Sbjct: 68  RTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 401 DKT-LKNRDGLTPLDLCLYSGRD 422
                +N  G T  DL    GR+
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRN 150

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
           L+   A+   +D+ G T LH A +      +++LL +  D+N  D  G TPLHLA     
Sbjct: 33  LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGH 92
Query: 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
            +IV++LL  GAD   +++ G T  D+ + +G +
Sbjct: 93  LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 54/111 (48%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NA DK GLT LH A +     +   LL+  A+   +D  G 
Sbjct: 22  ARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGE 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
           T LH          +++LL +  D+N QD  G T   +++     D+ ++L
Sbjct: 82  TPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
           L+   A+    D+ G T LH A        +++LL    D+N  D  G TPLHL      
Sbjct: 33  LMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGH 92
Query: 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
            +IV++LL  GAD   +++ G T  D+ + +G +
Sbjct: 93  LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 61/142 (42%), Gaps = 1/142 (0%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            LH  AA         LL+ + D N  D  G T LH A+    Q V   L+R  A     
Sbjct: 60  ALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 340 D-EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
              DG T L  A + A    ++ L+  + D+N  D+ G + LH A      D   +LL  
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179
Query: 399 GADKTLKNRDGLTPLDLCLYSG 420
           GA+K ++N    TPL L    G
Sbjct: 180 GANKDMQNNREETPLFLAAREG 201

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 25/140 (17%)
Query: 281 LHSLAASGEF----YFVDALLKHNVDINAVDKDGLTALHKAII----GKKQAVTNYLLRE 332
           LH  AA+ +F    Y +++  K   DI  +D++G TAL   I+    G+ Q  +  LL E
Sbjct: 203 LHQAAANRDFGXXVYXLNST-KLKGDIEELDRNGXTAL--XIVAHNEGRDQVASAKLLVE 259
Query: 333 SANPFVVDEDGA-----------TLLHYAVQTASSPAIKILL-LYNVDINLQDNDGWTPL 380
                 VD DGA           T LHYA Q ++ P +K L+     + + QD DG TP+
Sbjct: 260 KG--AKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPI 317
Query: 381 HLAVQARRTDIVKLLLIKGA 400
            LA Q  R ++V  L+ +GA
Sbjct: 318 XLAAQEGRIEVVXYLIQQGA 337

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 314 LHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQTASSPAIKILLLY------- 365
           LH    G   A+T  + RES N  ++D     T+LH+    +S+   + L+++       
Sbjct: 98  LHTEAAGS-YAITEPITRESVN--IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA 154
Query: 366 -NVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTR 424
              D+N  D D  TPL LAV ARR  +V  L   GAD T+ N+   +     L+     R
Sbjct: 155 AGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERS----ALHQAAANR 210
Query: 425 TFG 427
            FG
Sbjct: 211 DFG 213

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQTA 354
           LL+ + D N  D  G T LH A+    Q V   L+R  A        DG T L  A + A
Sbjct: 77  LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 136
Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
               ++ L+  + D+N  D+ G + LH A      D   +LL  GA+K ++N    TPL 
Sbjct: 137 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 196
Query: 415 LCLYSG 420
           L    G
Sbjct: 197 LAAREG 202

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQTA 354
           LL+ + D N  D  G T LH A+    Q V   L+R  A        DG T L  A + A
Sbjct: 76  LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 135
Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
               ++ L+  + D+N  D+ G + LH A      D   +LL  GA+K ++N    TPL 
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 415 LCLYSG 420
           L    G
Sbjct: 196 LAAREG 201

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 11/171 (6%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV- 338
           PLH    + +    +ALL    D    D  G T LH A      A    L +    P + 
Sbjct: 48  PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107
Query: 339 -----VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD-NDGWTPLHLAVQARRTDIV 392
                 + +G T LH A        +++L+    D+N Q+  +G T LHLAV  +  D+V
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 167
Query: 393 KLLLIKGADKTLKNRDGLTPLDLCLY--SGRDTRTFGMIKL--LKQLPTSK 439
            LLL  GAD       G +P  L     S R  +  G + L  L+ LP S+
Sbjct: 168 SLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 218

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 51/113 (45%)
Query: 302 DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKI 361
           D+N  D  G + LH A    + AV   L+   A   V++    T LH A        ++ 
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 362 LLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
           LL Y  DIN  +  G  PLH A    +  + + L+  GA  ++ N+ G  P+D
Sbjct: 91  LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVD 143

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 368 DINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG 420
           D+N  D+ G++PLH A +  R+ +V++L+++GA   + NR   TPL L    G
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQTA 354
           LL+ + D N  D  G T LH A+    Q V   L+R  A        DG T L  A + A
Sbjct: 44  LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103
Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
               ++ L+  + D+N  D+ G + LH A      D   +LL  GA+K ++N    TPL 
Sbjct: 104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 163
Query: 415 LCLYSG 420
           L    G
Sbjct: 164 LAAREG 169

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402
           G  LL  A +      ++IL+    D+N +D DG+TPLHLA +    +IV++LL  GAD 
Sbjct: 3   GKKLLE-AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 403 TLKNRDGLTPLDLCLYSGRD 422
             +++ G T  D+ + +G +
Sbjct: 62  NAQDKFGKTAFDISIDNGNE 81

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402
           G T LH A        +++LL    D+N   N G TPLHLA  A   +IV++LL  GAD 
Sbjct: 47  GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 403 TLKNRDGLTPLDLCLYSGRD 422
             +++ G T  D+ + +G +
Sbjct: 107 NAQDKFGKTAFDISIDNGNE 126

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 51/113 (45%)
Query: 302 DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKI 361
           D+N  D  G + LH A    + AV   L+   A   V++    T LH A        ++ 
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 362 LLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
           LL Y  DIN  +  G  PLH A    +  + + L+  GA  ++ N+ G  P+D
Sbjct: 86  LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVD 138

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 368 DINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG 420
           D+N  D+ G++PLH A +  R+ +V++L+++GA   + NR   TPL L    G
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 78

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 314 LHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD 373
           L  A+ G+ + V    ++E  +P   +E+G T LH A+  A+   +  L+    ++N  D
Sbjct: 26  LDAALTGELEVVQQ-AVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 374 NDGWTPLHLAVQARRTDIVKLLLIKGA---DKTLKNRDGLTPLDLC 416
           + GWTPLH A     T I   L+  GA     TL   DG T  + C
Sbjct: 85  SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS--DGATAFEKC 128

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQTA 354
           LL+ + D    D  G T LH A+    Q V   LLR  A        DG T L  A + A
Sbjct: 41  LLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLA 100
Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
               ++ L+  + D+N  D+ G + LH A      D   +LL  GA+K ++N    TPL 
Sbjct: 101 LEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLF 160
Query: 415 LCLYSG 420
           L    G
Sbjct: 161 LAAREG 166

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 60/143 (41%), Gaps = 7/143 (4%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV- 338
           PLH    + +    +ALL    D    D  G T LH A      A    L +    P + 
Sbjct: 45  PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 104
Query: 339 -----VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD-NDGWTPLHLAVQARRTDIV 392
                 + +G T LH A        +++L+    D+N Q+  +G T LHLAV  +  D+V
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 164
Query: 393 KLLLIKGADKTLKNRDGLTPLDL 415
            LLL  GAD       G +P  L
Sbjct: 165 SLLLKCGADVNRVTYQGYSPYQL 187

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVD-----INLQDNDGWTPLHLAVQARRTDIVK 393
           + EDG + LH A+      A+ + ++  V      +N Q+N   TPLHLAV   + +I +
Sbjct: 1   LTEDGDSFLHLAI-IHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 59
Query: 394 LLLIKGADKTLKNRDGLTPLDLCLYSG 420
            LL  G D  L++  G TPL L    G
Sbjct: 60  ALLGAGCDPELRDFRGNTPLHLACEQG 86

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 342 DGATLLHYAVQTASSPAIKILLLYNVDINL-QDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
           DG T LH AV    +  +++L     D+N  +   G TPLHLAV+A+   +++LLL  GA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 401 DKTLKNRDGLTPL 413
           D T +   G TPL
Sbjct: 217 DPTARMYGGRTPL 229

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 342 DGATLLHYAVQTASSPAIKILLLYNVDINL-QDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
           DG T LH AV    +  +++L     D+N  +   G TPLHLAV+A+   +++LLL  GA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 401 DKTLKNRDGLTPL 413
           D T +   G TPL
Sbjct: 217 DPTARMYGGRTPL 229

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 53/111 (47%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
           A +G+   V  L+ +  D+NA D+ GLT L+ A       +   LL+  A+   VD  G 
Sbjct: 22  ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
           T LH A         ++LL +  D+N QD  G T   +++     D+ ++L
Sbjct: 82  TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 48/94 (51%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
           L+   A+    DE G T L+ A        +++LL    D+N  D  G+TPLHLA     
Sbjct: 33  LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH 92
Query: 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
            +I ++LL  GAD   +++ G T  D+ + +G +
Sbjct: 93  LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL-IKGAD 401
           G T L  AV       +K LL    D+N+QD+DG T L  A +    +I  LLL +   D
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD 242
Query: 402 KTLKNRDGLTPLDLCLYSGR 421
            +L +RDG T L + L +G+
Sbjct: 243 ISLTDRDGSTALMVALDAGQ 262

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PL      G    +D L+++   +   D +G TAL  A+   +  +   LL + +N    
Sbjct: 38  PLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK 97
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           D  G T L +++    S     LL +  ++N ++ +G TPL +A +  R++IVK LL  G
Sbjct: 98  DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157
Query: 400 ADKTLKNRDGLTP 412
           AD + ++  GLT 
Sbjct: 158 ADISARDLTGLTA 170

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402
           G  LL  A +      ++IL+    D+  +D +G TPLHLA +    ++VKLLL  GAD 
Sbjct: 25  GKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Query: 403 TLKNRDGLTPLDLCLYSGRD 422
             +++ G T  D+ + +G +
Sbjct: 84  XAQDKFGKTAFDISIDNGNE 103

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402
           G  LL  A +      ++IL+    D+  +D +G TPLHLA +    ++VKLLL  GAD 
Sbjct: 7   GKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 65
Query: 403 TLKNRDGLTPLDLCLYSGRD 422
             +++ G T  D+ + +G +
Sbjct: 66  NAQDKFGKTAFDISIDNGNE 85

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 32/127 (25%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH  A  G   ++   L + V +N +DK G TAL+ A  G  + +   L  +       
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQP------ 129
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
                                     N+++N Q+  G T LH A      DIV+LLL KG
Sbjct: 130 --------------------------NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163
Query: 400 ADKTLKN 406
           A   L+N
Sbjct: 164 ARTDLRN 170

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 297 LKHNVDINAVD--KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTA 354
           L H  D+N V+  +D  T L +A          +LL+  AN    D  G   LH+A    
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
            +    + L    D+  +D++G  PL +A++    DIV LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 297 LKHNVDINAVD--KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTA 354
           L H  D+N V+  +D  T L +A          +LL+  AN    D  G   LH+A    
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
            +    + L    D+  +D++G  PL +A++    DIV LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 297 LKHNVDINAVD--KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTA 354
           L H  D+N V+  +D  T L +A          +LL+  AN    D  G   LH+A    
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
            +    + L    D+  +D++G  PL +A++    DIV LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 312 TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINL 371
           TA  KA    +QA++  L  E  +   VDE+G T L +     S   +++L     D++ 
Sbjct: 51  TAARKA---DEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 372 QD-NDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLC 416
           +D   G T LH+A    R ++V+ L+  GAD  +++  GLT L+L 
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 312 TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINL 371
           TA  KA    +QA++  L  E  +   VDE+G T L +     S   +++L     D++ 
Sbjct: 50  TAARKA---DEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 372 QD-NDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLC 416
           +D   G T LH+A    R ++V+ L+  GAD  +++  GLT L+L 
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Query: 278 WL---PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
           WL   PLH  A  G F   + LL+  V  +A  K   T LH A       +   LL+  A
Sbjct: 32  WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA 91
Query: 335 NPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
           +    D    T LH+A +      +++L+ Y  D++ Q     T   +++     D+ ++
Sbjct: 92  DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Query: 395 L 395
           L
Sbjct: 152 L 152

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 40/85 (47%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
           +L  +  PF  D  G + LH A Q       ++LL   V  + +     TPLH+A     
Sbjct: 20  ILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79
Query: 389 TDIVKLLLIKGADKTLKNRDGLTPL 413
            +IV++LL  GAD   K+   +T L
Sbjct: 80  ANIVEVLLKHGADVNAKDMLKMTAL 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	439
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-40
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-33
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-40
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-39
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-32
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-38
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-32
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-37
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-36
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-36
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-35
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-31
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-30
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-34
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-36
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-28
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-27
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-36
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-30
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-36
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-31
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-26
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-35
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-30
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-23
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-35
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-31
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-31
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-35
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-27
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-35
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-31
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-30
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-28
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-35
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-35
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-32
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-30
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-29
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-35
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-29
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-26
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-34
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-30
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-34
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-28
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-34
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-33
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-29
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-34
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-29
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-33
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-30
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-25
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-33
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-32
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-28
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-26
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-33
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-20
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-30
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-26
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-27
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-25
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-25
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-28
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-26
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-33
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-31
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-21
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-32
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-31
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-21
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-32
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-30
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-27
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-31
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-29
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-29
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-31
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-29
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-31
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-31
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-30
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-31
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-30
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-25
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-10
2rfa_A	232	Transient receptor potential cation channel subfa	6e-31
2rfa_A	232	Transient receptor potential cation channel subfa	4e-26
2rfa_A	232	Transient receptor potential cation channel subfa	4e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-30
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-27
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-24
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-30
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-29
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-27
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-28
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-27
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-28
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-22
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-26
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-20
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-24
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-13
2pnn_A	273	Transient receptor potential cation channel subfa	2e-23
2pnn_A	273	Transient receptor potential cation channel subfa	7e-21
2pnn_A	273	Transient receptor potential cation channel subfa	5e-13
2pnn_A	273	Transient receptor potential cation channel subfa	5e-09
2etb_A	256	Transient receptor potential cation channel subfam	6e-23
2etb_A	256	Transient receptor potential cation channel subfam	7e-22
2etb_A	256	Transient receptor potential cation channel subfam	1e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-20
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-20
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-19
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-17
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-17
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-16
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-16
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  140 bits (357), Expect = 3e-40
 Identities = 46/138 (33%), Positives = 70/138 (50%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
            L +H LAA GE  ++   ++    IN  D++G T L  A    + AV  +LL+  A+P 
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
           ++ +   + L  A     +  +K+LL   VD+N  D +G TPL  AV       VK+LL 
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123

Query: 398 KGADKTLKNRDGLTPLDL 415
            GAD T++   G   +DL
Sbjct: 124 SGADPTIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  121 bits (306), Expect = 6e-33
 Identities = 30/129 (23%), Positives = 52/129 (40%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PL   AA G+   V+ LL++  D   + K   +AL  A       +   LL    +    
Sbjct: 39  PLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEY 98

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           D +G T L YAV       +K+LL    D  ++ + G+  + LAV      + +++    
Sbjct: 99  DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158

Query: 400 ADKTLKNRD 408
                  ++
Sbjct: 159 LKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 57.4 bits (140), Expect = 5e-10
 Identities = 5/39 (12%), Positives = 11/39 (28%)

Query: 375 DGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
                +H          +   + +       + +G TPL
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPL 40

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 53.5 bits (130), Expect = 1e-08
 Identities = 9/65 (13%), Positives = 18/65 (27%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
             PL           V  LL+   D       G  ++  A+    ++V   +        
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162

Query: 338 VVDED 342
              ++
Sbjct: 163 QNIKE 167

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  139 bits (354), Expect = 5e-40
 Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 276 KKWLPLHSLAASGEFYFVDALL-KHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
           +    L   AA G+   V  LL +  V  +A+++ G TAL   + G    +   LL++ A
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTA-IALELLKQGA 59

Query: 335 NPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
           +P V D  G + +H A +T     +K+L+ +  D+N+ D  G  P+HLAVQ   T +V  
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS- 118

Query: 395 LLIKGADKTLKNRDGLTPLDLCLYSGR 421
            L   +D   ++  GLTPL+L L  G 
Sbjct: 119 FLAAESDLHRRDARGLTPLELALQRGA 145

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  109 bits (274), Expect = 1e-28
 Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 2/140 (1%)

Query: 257 KEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHK 316
           +E + LL+++L H           L  +   G       LLK     N  D  G + +H 
Sbjct: 16  QEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASPNVQDTSGTSPVHD 74

Query: 317 AIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDG 376
           A           L+   A+  V D  GA  +H AVQ   +  +   L    D++ +D  G
Sbjct: 75  AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLHRRDARG 133

Query: 377 WTPLHLAVQARRTDIVKLLL 396
            TPL LA+Q    D+V +L 
Sbjct: 134 LTPLELALQRGAQDLVDILQ 153

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  144 bits (367), Expect = 5e-39
 Identities = 50/158 (31%), Positives = 67/158 (42%), Gaps = 4/158 (2%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
             PLH  A  G    V  LL    + N  +K GLT LH         V + L++      
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
                G T LH A    +   +K LL +  D+N +   G++PLH A Q   TDIV LLL 
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365

Query: 398 KGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435
            GA     + DG TPL +    G       +  +LK +
Sbjct: 366 NGASPNEVSSDGTTPLAIAKRLGY----ISVTDVLKVV 399

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  139 bits (353), Expect = 4e-37
 Identities = 43/142 (30%), Positives = 58/142 (40%)

Query: 272 TATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLR 331
                   PLH  +  G    V  LL+     N  +    T LH A       V  YLL+
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68

Query: 332 ESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDI 391
             A      +D  T LH A +   +  +K+LL  N + NL    G TPLH+A +    + 
Sbjct: 69  NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVET 128

Query: 392 VKLLLIKGADKTLKNRDGLTPL 413
           V  LL K A +    + G TPL
Sbjct: 129 VLALLEKEASQACMTKKGFTPL 150

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  138 bits (351), Expect = 7e-37
 Identities = 43/141 (30%), Positives = 62/141 (43%)

Query: 273 ATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRE 332
           +  K   PLH  A +G       LL++   +NA  KD  T LH A       +   LL  
Sbjct: 43  SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102

Query: 333 SANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV 392
           +ANP +    G T LH A +      +  LL            G+TPLH+A +  +  + 
Sbjct: 103 NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA 162

Query: 393 KLLLIKGADKTLKNRDGLTPL 413
           +LLL + A      ++GLTPL
Sbjct: 163 ELLLERDAHPNAAGKNGLTPL 183

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  138 bits (350), Expect = 1e-36
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 4/153 (2%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH  A   +     +LL++    NA    G+T LH A       +   LL + AN  + 
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           ++ G T LH   Q    P   +L+ + V ++     G+TPLH+A       +VK LL   
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334

Query: 400 ADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
           AD   K + G +PL      G       ++ LL
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGH----TDIVTLL 363

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  136 bits (345), Expect = 5e-36
 Identities = 38/134 (28%), Positives = 52/134 (38%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH          V  LL      ++   +G T LH A    +  V   LL+   +    
Sbjct: 182 PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
              G T LH A Q   +  + +LL    + NL +  G TPLHL  Q     +  +L+  G
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301

Query: 400 ADKTLKNRDGLTPL 413
                  R G TPL
Sbjct: 302 VMVDATTRMGYTPL 315

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  136 bits (344), Expect = 8e-36
 Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 3/152 (1%)

Query: 267 LPHLA---TATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQ 323
           L + A    AT+    PLH  A  G    V ALL+       + K G T LH A    K 
Sbjct: 100 LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV 159

Query: 324 AVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLA 383
            V   LL   A+P    ++G T LH AV   +   +K+LL      +    +G+TPLH+A
Sbjct: 160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219

Query: 384 VQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
            +  + ++ + LL  G     ++  G+TPL L
Sbjct: 220 AKQNQVEVARSLLQYGGSANAESVQGVTPLHL 251

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  134 bits (340), Expect = 3e-35
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH +A  G     D L+KH V ++A  + G T LH A       +  +LL+  A+    
Sbjct: 281 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI-- 397
            + G + LH A Q   +  + +LL      N   +DG TPL +A +     +  +L +  
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 400

Query: 398 -KGADKTLKNRDGLTPLD 414
            + +   + ++  ++  +
Sbjct: 401 DETSFVLVSDKHRMSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  133 bits (337), Expect = 7e-35
 Identities = 45/134 (33%), Positives = 60/134 (44%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH  A  G    V  LL++N + N     G T LH A           LL + A+   +
Sbjct: 83  PLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM 142

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
            + G T LH A +       ++LL  +   N    +G TPLH+AV     DIVKLLL +G
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 202

Query: 400 ADKTLKNRDGLTPL 413
                   +G TPL
Sbjct: 203 GSPHSPAWNGYTPL 216

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  127 bits (321), Expect = 1e-32
 Identities = 37/115 (32%), Positives = 51/115 (44%)

Query: 299 HNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPA 358
             +      + GLT LH A       +   LL+  A+P V +    T LH A +   +  
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 359 IKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
            K LL     +N +  D  TPLH A +   T++VKLLL   A+  L    G TPL
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL 117

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 99.9 bits (250), Expect = 4e-23
 Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH  +  G    V  LL+H  D+NA  K G + LH+A       +   LL+  A+P  V
Sbjct: 314 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373

Query: 340 DEDGATLLHYAVQTASSPAIKILLLY---NVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
             DG T L  A +        +L +       + + D    +             V  +L
Sbjct: 374 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEIL 424

Query: 397 IKGADK 402
               D+
Sbjct: 425 DVSEDE 430

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  140 bits (355), Expect = 4e-38
 Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 1/146 (0%)

Query: 276 KKWLPLHSLAASG-EFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
            K   L   A SG E   +  L   NV+ +A D    T LH A    +  +   LL+  A
Sbjct: 23  YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82

Query: 335 NPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
           +    D+ G   LH A         ++LL +   +N  D   +TPLH A    R ++  L
Sbjct: 83  DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL 142

Query: 395 LLIKGADKTLKNRDGLTPLDLCLYSG 420
           LL  GAD TL N  G + +D+     
Sbjct: 143 LLSHGADPTLVNCHGKSAVDMAPTPE 168

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  127 bits (323), Expect = 2e-33
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 24/165 (14%)

Query: 273 ATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRE 332
                 +PLH+  + G +   + LLKH   +NA+D    T LH+A    +  V + LL  
Sbjct: 87  KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146

Query: 333 SANPFVVDEDGATLLHYAVQ--------------TASSPA-------IKILLLYNVDINL 371
            A+P +V+  G + +  A                +    A       +K  L   +    
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK 206

Query: 372 QDNDGWTPLHLAVQ---ARRTDIVKLLLIKGADKTLKNRDGLTPL 413
           Q     T LH AV     +R  + +LLL KGA+   KN+D +TPL
Sbjct: 207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL 251

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  127 bits (321), Expect = 3e-33
 Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 3/138 (2%)

Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAII---GKKQAVTNYLLRESANPF 337
           L   A   +   V   L   +      +   TALH A+     K++ V   LLR+ AN  
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
             ++D  T LH A + A +  +++L  +   +N  D+ G T LH A  A      +LLL 
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS 301

Query: 398 KGADKTLKNRDGLTPLDL 415
            G+D ++ +  G T   +
Sbjct: 302 YGSDPSIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  124 bits (314), Expect = 3e-32
 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 8/133 (6%)

Query: 280 PLHSLAASGEFYF---VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
            LH   AS         + LL+   ++N  +KD +T LH A       V   L +  A  
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM 273

Query: 337 FVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
             +D  G T LH A         ++LL Y  D ++    G+T   +       + V+ +L
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-----NEAVQQIL 328

Query: 397 IKGADKTLKNRDG 409
            +       + D 
Sbjct: 329 SESTPMRTSDVDY 341

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  122 bits (308), Expect = 2e-31
 Identities = 38/179 (21%), Positives = 62/179 (34%), Gaps = 28/179 (15%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAII-GKKQAV----------- 325
           + PLH  A+         LL H  D   V+  G +A+  A     ++ +           
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ 184

Query: 326 ---------TNYLLRESANPFVVDEDGATLLHYAVQ---TASSPAIKILLLYNVDINLQD 373
                        L      F   +   T LH AV           ++LL    ++N ++
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244

Query: 374 NDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
            D  TPLH+A +    D++++L   GA     +  G T L     +G         +LL
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHL----QTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  121 bits (305), Expect = 6e-31
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 296 LLKHNVDINAVDKDGLTALHK-AIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTA 354
           L   +       +     L + A  G ++ +   L   + N    D   +T LH A    
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69

Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
               +++LL +  D++ +D  G  PLH A      ++ +LLL  GA     +    TPL
Sbjct: 70  RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPL 128

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 7/73 (9%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            LH  A +G       LL +  D + +   G TA         +AV   +L ES      
Sbjct: 283 ALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAV-QQILSESTPMRTS 337

Query: 340 DEDGATLLHYAVQ 352
           D D    L  A +
Sbjct: 338 DVDYR--LLEASK 348

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 60.6 bits (148), Expect = 3e-10
 Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 14/74 (18%)

Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQAR-RTDIVKLLLIKG 399
           E G + L              L   +    L        L  A ++     ++ LL    
Sbjct: 2   EFGKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN 48

Query: 400 ADKTLKNRDGLTPL 413
            +    +    TPL
Sbjct: 49  VNCHASDGRKSTPL 62

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  131 bits (333), Expect = 7e-37
 Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVD-INAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
            L +H LAA GE   +   L+   + +N  D+ G T L  A    +     +LL   A+P
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 337 FVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
            ++ ++  + L  A     +  + +LL  +VDIN+ D +G TPL  AV+      V+ LL
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL 122

Query: 397 IKGADKTLKNRDGLTPLDL 415
            +GAD T +   G TP+DL
Sbjct: 123 ARGADLTTEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  130 bits (331), Expect = 2e-36
 Identities = 34/135 (25%), Positives = 57/135 (42%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           + PL   +A GE   V  LL+   D + + K+  +AL  A  G    +   LL    +  
Sbjct: 37  FTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN 96

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
           + D +G T L YAV+      ++ LL    D+  + + G+TP+ LAV      + +++  
Sbjct: 97  IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156

Query: 398 KGADKTLKNRDGLTP 412
                   N     P
Sbjct: 157 HILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 53.2 bits (129), Expect = 1e-08
 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 376 GWTPLHLAVQARRTDIVKLLLIKGADK-TLKNRDGLTPL 413
               +H        D +K  L KG +     +  G TPL
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPL 40

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  132 bits (335), Expect = 3e-36
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 1/145 (0%)

Query: 278 WLPLHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
              LH  A  G +  V  LL +  +D+N  D  G T +  A   K   +   LL + ++ 
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI 137

Query: 337 FVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
            + D +    LH+A  +      +ILL    D++  +  G +PLH+A +  R D V L L
Sbjct: 138 NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL 197

Query: 397 IKGADKTLKNRDGLTPLDLCLYSGR 421
            + +D TLKN++G TPL     + +
Sbjct: 198 SRDSDVTLKNKEGETPLQCASLNSQ 222

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  128 bits (324), Expect = 8e-35
 Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH+ A +G       L++   +I+   +D  T L +A          YL++  A     
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYN-VDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
           D +G+T LH A +      ++ LL    +D+N QD+ GWTP+  A + +  D+VKLLL K
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133

Query: 399 GADKTLKNRDGLTPL 413
           G+D  +++ +    L
Sbjct: 134 GSDINIRDNEENICL 148

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  119 bits (300), Expect = 2e-31
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 1/115 (0%)

Query: 300 NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAI 359
           +++     ++  + LH A       + + L++  AN     ED  T L  A +     A+
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60

Query: 360 KILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA-DKTLKNRDGLTPL 413
           K L+     ++ +D +G T LHLA +    ++V+ LL  G  D   ++  G TP+
Sbjct: 61  KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  115 bits (290), Expect = 7e-30
 Identities = 30/142 (21%), Positives = 49/142 (34%)

Query: 260 KVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAII 319
           + LL+     +       W P+           V  LL    DIN  D +    LH A  
Sbjct: 94  QYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAF 153

Query: 320 GKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTP 379
                +   LL    +   V+  G + LH A +      + + L  + D+ L++ +G TP
Sbjct: 154 SGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETP 213

Query: 380 LHLAVQARRTDIVKLLLIKGAD 401
           L  A    +      +     D
Sbjct: 214 LQCASLNSQVWSALQMSKALQD 235

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  131 bits (332), Expect = 4e-36
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 1/137 (0%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRES-ANP 336
             PLH  A  G   ++   L + V +N +DK G TAL+ A  G  + +   L  +     
Sbjct: 74  DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL 133

Query: 337 FVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
              ++ G T LH A     +  +++LL      +L++ +      +A  A    ++K   
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQ 193

Query: 397 IKGADKTLKNRDGLTPL 413
              A +TL N +     
Sbjct: 194 GTDAVRTLSNAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  125 bits (316), Expect = 8e-34
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 29/177 (16%)

Query: 273 ATSKKWLPLHSLAASGEFYFVDALLKHNVDINAV-------------------------- 306
                 + +     + E    D L     DI  +                          
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 67

Query: 307 --DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLL 364
              +     LH+A      +     L        +D+ G+T L++A        +++L  
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT 127

Query: 365 -YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG 420
             N+++N Q+  G T LH A      DIV+LLL KGA   L+N +     D+   + 
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAA 184

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  101 bits (253), Expect = 5e-25
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 5/110 (4%)

Query: 304 NAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL 363
               K G   + +A+   +    + L  E  +   + +   T              +  L
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTGL 60

Query: 364 LYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
           + +  +  Q      PLH A +      ++  L         ++ G T L
Sbjct: 61  IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTAL 110

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 63.4 bits (155), Expect = 8e-12
 Identities = 13/81 (16%), Positives = 21/81 (25%), Gaps = 5/81 (6%)

Query: 333 SANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV 392
           S  P    + G   +  A+ T        L +   DI    +   T         RT ++
Sbjct: 2   SKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI 61

Query: 393 KLLLIKGADKTLKNRDGLTPL 413
                       +      PL
Sbjct: 62  -----PSNYVAEQAESIDNPL 77

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 8/52 (15%), Positives = 11/52 (21%)

Query: 370 NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGR 421
                 G   +  A+          L I+  D         T        GR
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR 57

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  129 bits (327), Expect = 6e-36
 Identities = 45/136 (33%), Positives = 64/136 (47%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            L   A +G    V  L+ +  D+NA D  G T LH A       +   LL+  A+   V
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           D  G T L  A        +++LL    D+N  D +G TPLHLA      +IV++LL  G
Sbjct: 77  DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136

Query: 400 ADKTLKNRDGLTPLDL 415
           AD   +++ G T  D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  107 bits (271), Expect = 5e-28
 Identities = 37/117 (31%), Positives = 57/117 (48%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH  A +G    V+ LLK+  D+NAVD  G+T L  A +     +   LL+  A+    
Sbjct: 50  PLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN 109

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
           D +G T LH A        +++LL    D+N QD  G T   +++     D+ ++L 
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  105 bits (266), Expect = 3e-27
 Identities = 33/110 (30%), Positives = 48/110 (43%)

Query: 304 NAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL 363
           +    D    L +A    +      L+   A+    D  G T LH A        +++LL
Sbjct: 8   HHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL 67

Query: 364 LYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
               D+N  D+ G TPL LA      +IV++LL  GAD    + +G TPL
Sbjct: 68  KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPL 117

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  129 bits (326), Expect = 6e-36
 Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 2/143 (1%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            L S AA G+   + +LL++NV++NA +  G TAL    +G  + +   LL   ANP + 
Sbjct: 8   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPE-IARRLLLRGANPDLK 66

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           D  G  ++H A +      ++ LL +  D+N++DN+G  PLHLA +     +V+ L+   
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126

Query: 400 A-DKTLKNRDGLTPLDLCLYSGR 421
           A +   +N  G T  DL    GR
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGR 149

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  114 bits (289), Expect = 1e-30
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 2/122 (1%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            L  +   G       LL    + +  D+ G   +H A           LL   A+  + 
Sbjct: 41  ALQ-VMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE 99

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYN-VDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
           D +G   LH A +      ++ L+ +   ++  +++ G T   LA    R ++V L+   
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

Query: 399 GA 400
           GA
Sbjct: 160 GA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  102 bits (257), Expect = 4e-26
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 1/108 (0%)

Query: 306 VDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLY 365
           + +     L  A           LL+ + N    +  G T L       +    + LLL 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR 59

Query: 366 NVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
             + +L+D  G+  +H A +A   D ++ LL   AD  +++ +G  PL
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  129 bits (326), Expect = 9e-36
 Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 1/143 (0%)

Query: 280 PLHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
            + +    G    V   L +   D+N  D  G + LH A    + AV   L+   A   V
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67

Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
           ++    T LH A        ++ LL Y  DIN  +  G  PLH A    +  + + L+  
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127

Query: 399 GADKTLKNRDGLTPLDLCLYSGR 421
           GA  ++ N+ G  P+D      R
Sbjct: 128 GALVSICNKYGEMPVDKAKAPLR 150

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  116 bits (293), Expect = 5e-31
 Identities = 28/122 (22%), Positives = 48/122 (39%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH     G    V+ L+     IN +++   T LH A     + +   LL+  A+   V
Sbjct: 42  PLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           +E G   LHYA         + L+     +++ +  G  P+  A    R  + +     G
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161

Query: 400 AD 401
            +
Sbjct: 162 QN 163

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  102 bits (257), Expect = 7e-26
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 1/108 (0%)

Query: 307 DKDGLTALHKAIIGKKQAVTNYLLRESANPF-VVDEDGATLLHYAVQTASSPAIKILLLY 365
             + +  +               L  + N     D+ G + LH+A +   S  +++L++ 
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 366 NVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
              IN+ +    TPLHLA      DIV+ LL   AD    N  G  PL
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPL 109

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  131 bits (333), Expect = 1e-35
 Identities = 34/149 (22%), Positives = 54/149 (36%), Gaps = 2/149 (1%)

Query: 269 HLATATSKKWLPLHSLAAS-GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTN 327
                      P    +    E           + + A + DG T LH A+I K   +  
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175

Query: 328 YLLRESANPFVVDED-GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQA 386
            L    A+    +   G T LH AV+  ++  +++LL    D   +   G TPL  A+  
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235

Query: 387 RRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
               + +LL   GA +     D L+P   
Sbjct: 236 PNPILARLLRAHGAPEPEDGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  117 bits (296), Expect = 2e-30
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 303 INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV---DEDGATLLHYAVQTASSPAI 359
              V +DG TALH A+I + +   ++LL  SA    +   ++ G T LH A     +  +
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 360 KILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
           + L      + + +  G T LHLA + R      +LL           D     
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  104 bits (262), Expect = 1e-25
 Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 1/141 (0%)

Query: 257 KEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKD-GLTALH 315
            EE+         L         PLH      +   V  L     D+N  +   G T LH
Sbjct: 138 NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197

Query: 316 KAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDND 375
            A+  +  +V   LL+  A+P      G T L  A+   +    ++L  +         D
Sbjct: 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257

Query: 376 GWTPLHLAVQARRTDIVKLLL 396
             +P   +     +D      
Sbjct: 258 KLSPCSSSGSDSDSDNRDEGD 278

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 99.2 bits (248), Expect = 1e-23
 Identities = 32/151 (21%), Positives = 48/151 (31%), Gaps = 17/151 (11%)

Query: 280 PLHSLAASGEFYFVDALLKHNVD---INAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
            LH         F+D LL  +     ++  +  G TALH A I  + +    L    A  
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 337 FVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGW-------------TPLHLA 383
            V +  G T LH A +  +     +LL          +D +              P  + 
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131

Query: 384 VQAR-RTDIVKLLLIKGADKTLKNRDGLTPL 413
            Q     +              +N DG TPL
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  129 bits (326), Expect = 3e-35
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 1/137 (0%)

Query: 280 PLHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
           PLH+  ++        L+++   D++A   DG T L  A     + +   L+   A+   
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120

Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
           VD+ G + LH+A    +  A  +LL    + ++Q+N   TPL LA +    +  K+LL  
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180

Query: 399 GADKTLKNRDGLTPLDL 415
            A++ + +     P D+
Sbjct: 181 FANRDITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  119 bits (300), Expect = 2e-31
 Identities = 33/123 (26%), Positives = 53/123 (43%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PL   A       ++ L+  + D+NAVD  G +ALH A           LL+  AN  + 
Sbjct: 95  PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 154

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           +    T L  A +  S    K+LL +  + ++ D+    P  +A +    DIV+LL    
Sbjct: 155 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214

Query: 400 ADK 402
             +
Sbjct: 215 LVR 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  118 bits (299), Expect = 2e-31
 Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 2/123 (1%)

Query: 293 VDALLKHNVDI-NAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAV 351
           +   +     + N  D+ G TALH A    +      LL  SA+  + D  G T LH AV
Sbjct: 7   ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66

Query: 352 QTASSPAIKILLLYN-VDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGL 410
              +    +IL+     D++ + +DG TPL LA +     +++ L+   AD    +  G 
Sbjct: 67  SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 126

Query: 411 TPL 413
           + L
Sbjct: 127 SAL 129

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 90.9 bits (227), Expect = 3e-21
 Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 325 VTNYLLRESANPF-VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLA 383
           V +  + + A+     D  G T LH A + + S A K LL  + D N+QDN G TPLH A
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65

Query: 384 VQARRTDIVKLLLIKGA-DKTLKNRDGLTPL 413
           V A    + ++L+   A D   +  DG TPL
Sbjct: 66  VSADAQGVFQILIRNRATDLDARMHDGTTPL 96

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  127 bits (323), Expect = 4e-35
 Identities = 39/136 (28%), Positives = 66/136 (48%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PL      G    +D L+++   +   D +G TAL  A+   +  +   LL + +N    
Sbjct: 38  PLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK 97

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           D  G T L +++    S     LL +  ++N ++ +G TPL +A +  R++IVK LL  G
Sbjct: 98  DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157

Query: 400 ADKTLKNRDGLTPLDL 415
           AD + ++  GLT    
Sbjct: 158 ADISARDLTGLTAEAS 173

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  107 bits (271), Expect = 1e-27
 Identities = 30/117 (25%), Positives = 48/117 (41%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            L     +      + LL    ++N  D  G T L  +II     ++ +LL   AN    
Sbjct: 71  ALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDR 130

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
           + +G T L  A +   S  +K LL    DI+ +D  G T    A    R +++K+  
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 97.5 bits (244), Expect = 6e-24
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 304 NAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL 363
           + +DK+G                ++L          D    T L  A       AI  L+
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYR------DSYNRTPLMVACMLGMENAIDKLV 55

Query: 364 LYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
                +  +D +G T L  AV+  R  I + LL KG++   K+  G TPL
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL 105

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  129 bits (327), Expect = 4e-35
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 1/135 (0%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            +      G +     L++   D+   DK+ +T LH A I  +  +  Y + + A    +
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71

Query: 340 DED-GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
             D  +T LH+A +      +  L+ Y  D +L D +G + +HLA Q   T IV  L+ K
Sbjct: 72  GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131

Query: 399 GADKTLKNRDGLTPL 413
           G D  + +++G+TPL
Sbjct: 132 GQDVDMMDQNGMTPL 146

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  127 bits (321), Expect = 2e-34
 Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
             PLH     G    V  L+K+  D + +D +G + +H A      ++  YL+ +  +  
Sbjct: 77  STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136

Query: 338 VVDEDGATLLHYAVQTASSPAI-KILLLYNVDINLQDN-DGWTPLHLAVQARRTDIVKLL 395
           ++D++G T L +A     S    ++LL +NV +NL D     T LH AV A  T ++ LL
Sbjct: 137 MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196

Query: 396 LIKGADKTLKNRDGLTPLDL 415
           L  GA+   +N  G + LDL
Sbjct: 197 LEAGANVDAQNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  119 bits (301), Expect = 2e-31
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 3/139 (2%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKD-GLTALHKAIIGKKQAVTNYLLRESANP 336
              LH  A +     V   +     ++ +  D   T LH A      ++   L++  A+P
Sbjct: 43  VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP 102

Query: 337 FVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQ-ARRTDIVKLL 395
            ++D +G + +H A Q   +  +  L+    D+++ D +G TPL  A       D  +LL
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162

Query: 396 LIKGADKTLK-NRDGLTPL 413
           L       L       T L
Sbjct: 163 LTFNVSVNLGDKYHKNTAL 181

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  115 bits (291), Expect = 5e-30
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 2/131 (1%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAII-GKKQAVTNYLLRESANP 336
              +H  A  G    V  L+    D++ +D++G+T L  A         T  LL  + + 
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169

Query: 337 FVVDE-DGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
            + D+    T LH+AV   ++  I +LL    +++ Q+  G + L LA Q +   ++  L
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229

Query: 396 LIKGADKTLKN 406
                 K   N
Sbjct: 230 QEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  111 bits (281), Expect = 1e-28
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 1/112 (0%)

Query: 303 INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKIL 362
           +  +D      + KA           L+    +    D++  TLLH+A        +K  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 363 LLYNVDINLQDND-GWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
           +     ++    D   TPLH A +     +V  L+  GAD +L + +G + +
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCI 113

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  129 bits (327), Expect = 4e-35
 Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA-NPFV 338
            LH  A          LL+ + D N  D  G T LH A+    Q V   L+R  A +   
Sbjct: 60  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119

Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
              DG T L  A + A    ++ L+  + D+N  D+ G + LH A      D   +LL  
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179

Query: 399 GADKTLKNRDGLTPL 413
           GA+K ++N    TPL
Sbjct: 180 GANKDMQNNREETPL 194

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  129 bits (326), Expect = 8e-35
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 1/137 (0%)

Query: 280 PLHSLAASGEFYFVDALLKH-NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
           PLH+  ++        L+++   D++A   DG T L  A     + +   L+   A+   
Sbjct: 93  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152

Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
           VD+ G + LH+A    +  A  +LL    + ++Q+N   TPL LA +    +  K+LL  
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212

Query: 399 GADKTLKNRDGLTPLDL 415
            A++ + +     P D+
Sbjct: 213 FANRDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  120 bits (304), Expect = 8e-32
 Identities = 33/122 (27%), Positives = 54/122 (44%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PL   A       ++ L+  + D+NAVD  G +ALH A           LL+  AN  + 
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 186

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           +    T L  A +  S    K+LL +  + ++ D+    P  +A +    DIV+LL ++ 
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246

Query: 400 AD 401
             
Sbjct: 247 HH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  117 bits (296), Expect = 1e-30
 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 6/149 (4%)

Query: 269 HLATATSKKWLPLHSLAASGEFYFVDALLKHNVDI-NAVDKDGLTALHKAIIGKKQAVTN 327
            +A+ +       +S         +   +     + N  D+ G TALH A    +     
Sbjct: 15  MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAK 74

Query: 328 YLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLY---NVDINLQDNDGWTPLHLAV 384
            LL  SA+  + D  G T LH AV   +    +IL+     ++D   + +DG TPL LA 
Sbjct: 75  RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA--RMHDGTTPLILAA 132

Query: 385 QARRTDIVKLLLIKGADKTLKNRDGLTPL 413
           +     +++ L+   AD    +  G + L
Sbjct: 133 RLAVEGMLEDLINSHADVNAVDDLGKSAL 161

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  114 bits (289), Expect = 1e-29
 Identities = 41/128 (32%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 301 VDINAVDKDGLTALHKAIIGKKQA-------------VTNYLLRESANPF-VVDEDGATL 346
           +D+N    DG T L  A                    V +  + + A+     D  G T 
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 347 LHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA-DKTLK 405
           LH A + + S A K LL  + D N+QDN G TPLH AV A    + ++L+   A D   +
Sbjct: 61  LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120

Query: 406 NRDGLTPL 413
             DG TPL
Sbjct: 121 MHDGTTPL 128

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  126 bits (320), Expect = 6e-35
 Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 280 PLHSLAASGEFYFVDALL-KHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
            L   A +G+   V  L    +V+   ++    T LH A    + +V  YLL+  A+   
Sbjct: 11  QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70

Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
            D+ G   LH A         ++L+ +   +N+ D   +TPLH A    + +I KLLL  
Sbjct: 71  KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130

Query: 399 GADKTLKNRDGLTPLDL 415
           GAD T KNRDG TPLDL
Sbjct: 131 GADPTKKNRDGNTPLDL 147

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  112 bits (283), Expect = 1e-29
 Identities = 42/121 (34%), Positives = 53/121 (43%), Gaps = 1/121 (0%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH  A       V+ LL+H  D++A DK GL  LH A       V   L++  A   V 
Sbjct: 45  PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 104

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           D    T LH A         K+LL +  D   ++ DG TPL L  +   TDI  LL    
Sbjct: 105 DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDA 163

Query: 400 A 400
           A
Sbjct: 164 A 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  102 bits (257), Expect = 5e-26
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 1/109 (0%)

Query: 306 VDKDGLTALHKAIIGKKQAVTNYLL-RESANPFVVDEDGATLLHYAVQTASSPAIKILLL 364
            + +    L +A           L   +S N   ++   +T LH+A        ++ LL 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 365 YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
           +  D++ +D  G  PLH A      ++ +LL+  GA   + +    TPL
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL 112

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  125 bits (317), Expect = 1e-34
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 5/154 (3%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            L   A +G+   V  L+ +       D  G + LH A      + T  LLR   +    
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
            +   T LH A     +  +++LL +  D+N +D    T LH A +    ++V+LL+  G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 400 ADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK 433
           AD   +++   T  D+ + +G +     + ++L+
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNE----DLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  101 bits (255), Expect = 6e-26
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 309 DGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD 368
           D    L +A    +      L+   A  F  D  G + LH A Q       ++LL   V 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAP-FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
            + +     TPLH+A      +IV++LL  GAD   K+   +T L
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTAL 104

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  124 bits (315), Expect = 2e-34
 Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 2/140 (1%)

Query: 276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
                L + AA G    V ALL+   + NA +  G   +   ++G  + V   LL   A 
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSAR-VAELLLLHGAE 69

Query: 336 PFVVDEDGATL-LHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
           P   D    T  +H A +      + +L      ++++D  G  P+ LA +    D+ + 
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 129

Query: 395 LLIKGADKTLKNRDGLTPLD 414
           L          N   +   +
Sbjct: 130 LRAAAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  107 bits (271), Expect = 4e-28
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 4/120 (3%)

Query: 297 LKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASS 356
           ++     +   +     L  A    +      LL   ANP   +  G   +   +   S+
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57

Query: 357 PAIKILLLYNVDINLQDNDGWT-PLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
              ++LLL+  + N  D    T P+H A +    D + +L   GA   +++  G  P+DL
Sbjct: 58  RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 77.9 bits (193), Expect = 2e-17
 Identities = 22/116 (18%), Positives = 32/116 (27%), Gaps = 7/116 (6%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLT-ALHKAIIGKKQAVTNYLLRESANP 336
             P+  +   G     + LL H  + N  D   LT  +H A           L R  A  
Sbjct: 46  RRPIQ-VMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL 104

Query: 337 FVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV 392
            V D  G   +  A +       + L             G     +      +DI 
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-----GSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 57.1 bits (139), Expect = 4e-10
 Identities = 11/84 (13%), Positives = 21/84 (25%)

Query: 271 ATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLL 330
               +    P+H  A  G    +  L +    ++  D  G   +  A     + V  YL 
Sbjct: 72  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 131

Query: 331 RESANPFVVDEDGATLLHYAVQTA 354
             +      +              
Sbjct: 132 AAAGGTRGSNHARIDAAEGPSDIP 155

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  127 bits (322), Expect = 2e-34
 Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 5/141 (3%)

Query: 280 PLHSLAASGEFYFVDALLKH----NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
             H          + ALL       +D+ A + DGLTALH A+  + Q     LL   A+
Sbjct: 82  AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD 141

Query: 336 PFVVD-EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
              VD + G + L +AV+  S   +++LL +  ++N Q   G + LH A       +V+ 
Sbjct: 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRT 201

Query: 395 LLIKGADKTLKNRDGLTPLDL 415
           L+  GAD +LKN    TPL +
Sbjct: 202 LVRSGADSSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  124 bits (315), Expect = 2e-33
 Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 16/161 (9%)

Query: 262 LLNKKLPHLATATSKKWLPLHSLAASGEF----YFVDALLKHNVDINAVDKDGLTALHKA 317
           +  +              PLH     G        V+   +   +++  +    T LH A
Sbjct: 1   MATRA-------DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 53

Query: 318 IIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL----LYNVDINLQD 373
           +I    +V   L+   A+P  +D  G T  H A +  S   ++ LL       +D+  ++
Sbjct: 54  VITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113

Query: 374 NDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNR-DGLTPL 413
            DG T LH+AV     + V+LLL +GAD    +   G +PL
Sbjct: 114 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  114 bits (288), Expect = 1e-29
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 1/122 (0%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVD-KDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
            LH    +     V  LL+   DI+AVD K G + L  A+     ++   LL+  AN   
Sbjct: 119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 178

Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
               G++ LH A      P ++ L+    D +L++    TPL +A   R  DI++    +
Sbjct: 179 QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238

Query: 399 GA 400
            A
Sbjct: 239 PA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 11/56 (19%), Positives = 19/56 (33%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
            LHS +  G    V  L++   D +  +    T L  A   +   +        A+
Sbjct: 186 ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  124 bits (315), Expect = 4e-34
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 6/148 (4%)

Query: 270 LATATSKK-WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNY 328
           + + T+ +  +        G             D+ +   +  T    A     +   + 
Sbjct: 6   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQ 62

Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD-NDGWTPLHLAVQAR 387
           LL E  +   VDE+G T L +     S   +++L     D++ +D   G T LH+A    
Sbjct: 63  LL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121

Query: 388 RTDIVKLLLIKGADKTLKNRDGLTPLDL 415
           R ++V+ L+  GAD  +++  GLT L+L
Sbjct: 122 RPEVVEALVELGADIEVEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  111 bits (281), Expect = 3e-29
 Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 2/133 (1%)

Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
           S+   P  + A   +   +  LL  + D++AVD++G TAL              L    A
Sbjct: 42  SEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 100

Query: 335 NPFVVD-EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVK 393
           +    D   G T LH A        ++ L+    DI ++D  G T L LA +  +T    
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG 160

Query: 394 LLLIKGADKTLKN 406
             +  G    L+ 
Sbjct: 161 NPMQFGRRIGLEK 173

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  125 bits (316), Expect = 9e-34
 Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 4/142 (2%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNV--DINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
           W P H   + G    V +L    +  D+N +   G+T LH A+  K   V+ +L+   A+
Sbjct: 73  WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132

Query: 336 PFVVDEDGATLLHYAVQTASSPAIKILLLY-NVDINLQDNDGWTPLHLAVQARRTDIVKL 394
             + D+     LH A    S   I++L       +N QD  GWTPL  A+     D   L
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192

Query: 395 LLIK-GADKTLKNRDGLTPLDL 415
           L+ K GA+  L +  G    D+
Sbjct: 193 LVEKYGAEYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  124 bits (313), Expect = 2e-33
 Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 6/140 (4%)

Query: 280 PLHSLAASGEFYFVDALL-KHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP-- 336
           PLH      EF+ V  LL      +   D+DG   LH ++  +   +T++LL +  N   
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 337 -FVVDEDGATLLHYAVQTASSPAIKILL--LYNVDINLQDNDGWTPLHLAVQARRTDIVK 393
               D+ G T  H A    +   +K L       D+N   N G T LHLAV  +  ++ +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124

Query: 394 LLLIKGADKTLKNRDGLTPL 413
            L+  GA   +K++    PL
Sbjct: 125 FLIENGASVRIKDKFNQIPL 144

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  117 bits (295), Expect = 1e-30
 Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 6/142 (4%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINA---VDKDGLTALHKAIIGKKQAVTNYLL--RE 332
            +PLH   +         LL    ++N     D  G T  H A       V   L     
Sbjct: 37  RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96

Query: 333 SANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV 392
             +   +   G T LH AV        + L+     + ++D     PLH A       ++
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156

Query: 393 KLLLIKG-ADKTLKNRDGLTPL 413
           +LL   G +    +++ G TPL
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPL 178

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  100 bits (253), Expect = 8e-25
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 5/119 (4%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF-V 338
            LH       F     L+++   +   DK     LH+A       +   L     +    
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169

Query: 339 VDEDGATLLHYAVQTASSPAIKILLL-YNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
            D+ G T L +A+      A  +L+  Y  + +L DN G     +A+      + K  L
Sbjct: 170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 77.1 bits (191), Expect = 2e-16
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 343 GATLLHYAVQTASSPAI-KILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD 401
               LH A        + ++L      +  +D DG  PLH +V  +  +I   LL K  +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 402 ---KTLKNRDGLTPL 413
                  +  G TP 
Sbjct: 62  VNLDDYPDDSGWTPF 76

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  126 bits (319), Expect = 1e-33
 Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 273 ATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRE 332
            T+    PLH     G    V  LLKH   +N V  D  T L  A +       N LL+ 
Sbjct: 88  ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 147

Query: 333 SANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV 392
            A+    + D A+ +H A +      +  L+ Y  +I+ + +   TPL+LA + ++   V
Sbjct: 148 GASV-QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 206

Query: 393 KLLLIKGADKTLKNRDGLTPL 413
           K LL  GAD   + +   +PL
Sbjct: 207 KKLLESGADVN-QGKGQDSPL 226

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  123 bits (312), Expect = 1e-32
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 2/136 (1%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PL +   SG +  V+ LL+H   +   + D  + +H+A         N L+    N    
Sbjct: 128 PLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 186

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
                T L+ A +      +K LL    D+N Q     +PLH  V+    ++  LL+  G
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFG 245

Query: 400 ADKTLKNRDGLTPLDL 415
           AD   KN +G  P++L
Sbjct: 246 ADTQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  112 bits (282), Expect = 2e-28
 Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 2/141 (1%)

Query: 273 ATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRE 332
           +   K   +     +G   F    L  N  +        + +H+A I   Q     L+ +
Sbjct: 23  SMDGKQGGMDGSKPAGPRDFPGIRLLSN-PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ 81

Query: 333 SANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV 392
                ++  D  + LH A        +KILL +   +N    D  TPL  A  +   D V
Sbjct: 82  GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCV 141

Query: 393 KLLLIKGADKTLKNRDGLTPL 413
            LLL  GA    ++ D  +P+
Sbjct: 142 NLLLQHGASVQPES-DLASPI 161

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  107 bits (269), Expect = 2e-26
 Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 14/127 (11%)

Query: 293 VDALLKHNVDINAVDK-----DGLTALHKAIIGKKQAVTNYLLRESANPFVVDE-DGATL 346
              L+     + ++D      DG                   L   +NP + D     + 
Sbjct: 11  SSGLVPRGSHMASMDGKQGGMDGSKPAGPR------DFPGIRL--LSNPLMGDAVSDWSP 62

Query: 347 LHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKN 406
           +H A       +++ L+     +N+   D  +PLH A        VK+LL  GA      
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122

Query: 407 RDGLTPL 413
            D  TPL
Sbjct: 123 ADWHTPL 129

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  105 bits (265), Expect = 5e-26
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 273 ATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRE 332
             S    P+H  A  G    V++L+ +  +I+       T L+ A   +++A    LL  
Sbjct: 153 PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 212

Query: 333 SANPFVV--DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTD 390
            A+   V   +   + LH  V+TAS     +L+ +  D   ++ +G  P+ L      + 
Sbjct: 213 GAD---VNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV--PPESP 267

Query: 391 IVKLLLI-KGAD 401
           + +L L  +GA 
Sbjct: 268 LAQLFLEREGAS 279

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  125 bits (315), Expect = 2e-33
 Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 6/149 (4%)

Query: 269 HLATATSKK-WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTN 327
            + + T+ +  +        G             D+ +   +  T    A     +   +
Sbjct: 6   IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALS 62

Query: 328 YLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD-NDGWTPLHLAVQA 386
            LL E  +   VDE+G T L +     S   +++L     D++ +D   G T LH+A   
Sbjct: 63  QLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121

Query: 387 RRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
            R ++V+ L+  GAD  +++  GLT L+L
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALEL 150

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  113 bits (286), Expect = 2e-29
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 2/137 (1%)

Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
           S+   P  + A   +   +  LL  + D++AVD++G TAL              L    A
Sbjct: 43  SEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 101

Query: 335 NPFVVD-EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVK 393
           +    D   G T LH A        ++ L+    DI ++D  G T L LA +  +T    
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG 161

Query: 394 LLLIKGADKTLKNRDGL 410
             +  G    L+    +
Sbjct: 162 NPMQFGRRIGLEKVINV 178

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 87.7 bits (218), Expect = 5e-20
 Identities = 24/134 (17%), Positives = 40/134 (29%), Gaps = 13/134 (9%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            LH  A       V+AL++   DI   D+ GLTAL  A    K       ++       +
Sbjct: 114 ALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR---I 170

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
             +    +        +           +I  +   G    +L       D   +  +  
Sbjct: 171 GLEKVINVLEGQVFEYAE--------VDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHV 222

Query: 400 ADKTLKNRDGLTPL 413
           A+   K  D    L
Sbjct: 223 AEDVAK--DYEDGL 234

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 9/55 (16%), Positives = 12/55 (21%), Gaps = 2/55 (3%)

Query: 298 KHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQ 352
               +I      G    +                  A    V +D    L YAV 
Sbjct: 187 AEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE--DVAKDYEDGLEYAVA 239

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  127 bits (322), Expect = 3e-33
 Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 10/144 (6%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
             P      +G  +  D    +       + +    LH    G    +T  + RES N  
Sbjct: 62  LYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYA-ITEPITRESVNI- 119

Query: 338 VVDEDGATLLHYA--------VQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRT 389
           +      T+LH+          +       K  +    D+N  D D  TPL LAV ARR 
Sbjct: 120 IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRR 179

Query: 390 DIVKLLLIKGADKTLKNRDGLTPL 413
            +V  L+  GAD T+ N+   + L
Sbjct: 180 RLVAYLMKAGADPTIYNKSERSAL 203

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  122 bits (309), Expect = 2e-31
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 13/147 (8%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAII-GKKQAV-------TNYL 329
            + LH   A+G +   + + + +V+I    +   T LH        +             
Sbjct: 95  PIKLH-TEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 152

Query: 330 LRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRT 389
           +   A+   +D D  T L  AV       +  L+    D  + +    + LH A   R  
Sbjct: 153 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 212

Query: 390 DIVKLLL---IKGADKTLKNRDGLTPL 413
            ++  +L       D    +R+G+T L
Sbjct: 213 GMMVYMLNSTKLKGDIEELDRNGMTAL 239

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  119 bits (300), Expect = 3e-30
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 15/151 (9%)

Query: 280 PLHSLAASGEFYFVDALLKHN---VDINAVDKDGLTALHKAII-GKKQAV--TNYLLRES 333
            LH  AA+ +F  +  +L       DI  +D++G+TAL        +  V     L+ + 
Sbjct: 202 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG 261

Query: 334 AN--------PFVVDEDGATLLHYAVQTASSPAIKILLLYN-VDINLQDNDGWTPLHLAV 384
           A                G T LHYA Q ++ P +K L+     + + QD DG TP+ LA 
Sbjct: 262 AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA 321

Query: 385 QARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
           Q  R ++V  L+ +GA     +    T   L
Sbjct: 322 QEGRIEVVMYLIQQGASVEAVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  107 bits (269), Expect = 5e-26
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 12/137 (8%)

Query: 278 WLPLHSLAASGEFYFVDA---LLKHNVDIN--------AVDKDGLTALHKAIIGKKQAVT 326
              L  +A +     V +   L++    ++        +    G TALH A       + 
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295

Query: 327 NYLLRES-ANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQ 385
            YL+ E  +N    DEDG T +  A Q      +  L+     +   D    T   LA  
Sbjct: 296 KYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQA 355

Query: 386 ARRTDIVKLLLIKGADK 402
               +IV +      ++
Sbjct: 356 NNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 99.6 bits (249), Expect = 2e-23
 Identities = 23/150 (15%), Positives = 44/150 (29%), Gaps = 12/150 (8%)

Query: 274 TSKKWLPLHSLAASGEFYFVDALLKHNVDI--NAVDKDGLTALHKAIIGKKQAVTNYLLR 331
             +K    H    S +   ++A     +    N +    L    +        + ++   
Sbjct: 23  NEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHT 82

Query: 332 ESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDI 391
               P   + +    LH      S    + +   +V+I        T LH        + 
Sbjct: 83  NLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEK 140

Query: 392 VKLLLI--------KGADKTLKNRDGLTPL 413
            + L++         GAD    + D  TPL
Sbjct: 141 SEDLIVHEAKECIAAGADVNAMDCDENTPL 170

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.1 bits (193), Expect = 5e-16
 Identities = 14/143 (9%), Positives = 27/143 (18%), Gaps = 25/143 (17%)

Query: 272 TATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAII-GKKQAVTNYLL 330
              +  W+P                   N   +        +L +A   G  +   N L 
Sbjct: 11  MINASVWMPPMENEEK------------NRKNHQSITSSQHSLLEASYDGYIKRQRNEL- 57

Query: 331 RESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTD 390
                                   +                 + +    LH         
Sbjct: 58  ---------QHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYA 107

Query: 391 IVKLLLIKGADKTLKNRDGLTPL 413
           I + +  +  +     R   T L
Sbjct: 108 ITEPITRESVNII-DPRHNRTVL 129

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  125 bits (317), Expect = 3e-33
 Identities = 38/141 (26%), Positives = 54/141 (38%), Gaps = 1/141 (0%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
                   G    ++  +           DG   L     G  + V   LL   A+    
Sbjct: 11  NEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEV-LRLLERGADINYA 69

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           + DG T LH A    +   +K L+    +IN  DN+GW PLH A      DI + L+ +G
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129

Query: 400 ADKTLKNRDGLTPLDLCLYSG 420
           A     N +G TPLD+     
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEA 150

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  122 bits (308), Expect = 8e-32
 Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 8/146 (5%)

Query: 278 WLPLHSLAASGEFYFVDALL-KHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
             PL           +   + +  VDI A  K+    + +           +L     N 
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRD-------ARQWLNSGHIND 192

Query: 337 FVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
               + G T LH A     +  +K+L+    D+N++D DGWTPLH A    + +  ++L+
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252

Query: 397 IKGADKTLKNRDGLTPLDLCLYSGRD 422
               D    N+ G T  D+       
Sbjct: 253 ENLCDMEAVNKVGQTAFDVADEDILG 278

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  109 bits (275), Expect = 3e-27
 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            LH          V  L+++  +IN  D +G   LH A       +  YL+ + A+   V
Sbjct: 76  ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           + +G T L  A + A    ++        +N Q  D         +    D  + L    
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNE------VNRQGVDIEAARKEEERIMLRDARQWLNSGH 189

Query: 400 ADKTLKNRDGLTPL 413
            +     + G T L
Sbjct: 190 INDVRHAKSGGTAL 203

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  104 bits (262), Expect = 2e-25
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 1/111 (0%)

Query: 303 INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKIL 362
           +   D               +      + +     V  +DGA  L  A  +  +  +  L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRL 59

Query: 363 LLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
           L    DIN  + DG T LH A      D+VK L+  GA+    + +G  PL
Sbjct: 60  LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL 110

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  104 bits (262), Expect = 2e-25
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 7/149 (4%)

Query: 260 KVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAII 319
           +  +N++   +  A  ++   +   A          L   +++     K G TALH A  
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDA-------RQWLNSGHINDVRHAKSGGTALHVAAA 208

Query: 320 GKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTP 379
                V   L++   +  + D DG T LH A       A +IL+    D+   +  G T 
Sbjct: 209 KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA 268

Query: 380 LHLAVQARRTDIVKLLLIKGADKTLKNRD 408
             +A +     + +L   +    + K   
Sbjct: 269 FDVADEDILGYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 8/50 (16%), Positives = 15/50 (30%)

Query: 369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLY 418
           + + D        L         ++  ++K     +K  DG   L  C  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSS 50

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  127 bits (321), Expect = 4e-33
 Identities = 16/149 (10%), Positives = 42/149 (28%), Gaps = 13/149 (8%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN---- 335
            LH              ++  +D+N  D +    L+ ++      +T  LL+++      
Sbjct: 214 HLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQ 273

Query: 336 ---------PFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQA 386
                               +  A   +    +++L     ++    N G        + 
Sbjct: 274 ACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKK 333

Query: 387 RRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
               + ++ L   A    ++R       +
Sbjct: 334 AAPAVKRMKLAPSAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  125 bits (317), Expect = 1e-32
 Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 10/144 (6%)

Query: 280 PLHSLAASGEFYF--VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRES---- 333
            LH     G  Y   +  L++      A DK   T L +A+  + +   + ++       
Sbjct: 141 ALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS 200

Query: 334 -ANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV 392
                  ++ G + LH+A+           +   +D+N++DN+   PL+L+V+A    + 
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLT 260

Query: 393 KLLLIKGADKTLKNR---DGLTPL 413
           K LL K     ++     +G T L
Sbjct: 261 KELLQKTDVFLIQACPYHNGTTVL 284

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  119 bits (301), Expect = 2e-30
 Identities = 29/180 (16%), Positives = 63/180 (35%), Gaps = 24/180 (13%)

Query: 260 KVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAII 319
             L+            +  +P   L    E    +         +     G TALH  + 
Sbjct: 101 VALVEGA-------KERGQMPESLLNECDEREVNEI------GSHVKHCKGQTALHWCVG 147

Query: 320 GKKQ--AVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYN-----VDINLQ 372
              +   +   L++  A+P   D+   T L  A++  +  A+ +++        + ++  
Sbjct: 148 LGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA 207

Query: 373 DNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
           +  G + LH A+     D+    +  G D  +++ +   PL L + +        + K L
Sbjct: 208 NKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAM----VLLTKEL 263

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  113 bits (285), Expect = 3e-28
 Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 16/144 (11%)

Query: 272 TATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLR 331
                    LH     G       L       +     G   +H A++  K  +   L+ 
Sbjct: 48  IQNRFGCTALHLACKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVE 105

Query: 332 ESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQA--RRT 389
            +         G        +       +I        +++   G T LH  V       
Sbjct: 106 GAKE------RGQMPESLLNECDEREVNEI------GSHVKHCKGQTALHWCVGLGPEYL 153

Query: 390 DIVKLLLIKGADKTLKNRDGLTPL 413
           +++K+L+  GA  T K++   TPL
Sbjct: 154 EMIKILVQLGASPTAKDKADETPL 177

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  108 bits (272), Expect = 2e-26
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 298 KHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSP 357
              ++    D + +  +H A    +      L+    +P + +  G T LH A +     
Sbjct: 8   FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVD 67

Query: 358 AIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCL 417
             K L       +     G  P+HLAV A +TD+V  L+    +       G  P  L  
Sbjct: 68  TAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLN 119

Query: 418 YSGR 421
               
Sbjct: 120 ECDE 123

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 80.3 bits (199), Expect = 9e-17
 Identities = 14/117 (11%), Positives = 29/117 (24%), Gaps = 13/117 (11%)

Query: 280 PLHSLAASGEFYFVDALLKHN-------------VDINAVDKDGLTALHKAIIGKKQAVT 326
           PL+    +        LL+                 +       L  +  A    KQ V 
Sbjct: 247 PLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306

Query: 327 NYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLA 383
             L  +          GA       + A+    ++ L  +  +  +         ++
Sbjct: 307 QLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 68.7 bits (169), Expect = 6e-13
 Identities = 10/73 (13%), Positives = 18/73 (24%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
              + + A   +   +  L +   ++      G     K       AV    L  SA   
Sbjct: 291 LDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVR 350

Query: 338 VVDEDGATLLHYA 350
                 A     +
Sbjct: 351 TRSRSRARSSAVS 363

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  123 bits (311), Expect = 5e-33
 Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 3/139 (2%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
            + L   A +GE   V   +K   D +  +++G+TALH AI G   ++ ++L+   AN  
Sbjct: 22  LVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN 81

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD-NDGWTPLHLAVQARRT--DIVKL 394
             D  G T LH A     +     L+ +   I     +DG T        R    D    
Sbjct: 82  SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATY 141

Query: 395 LLIKGADKTLKNRDGLTPL 413
           L        L N   +  L
Sbjct: 142 LADVEQSMGLMNSGAVYAL 160

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  117 bits (295), Expect = 7e-31
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 4/128 (3%)

Query: 293 VDALLKHNVDINAVDK---DGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHY 349
           + ++L+         +   + L  L  A +  +  V    ++E  +P   +E+G T LH 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNR-D 408
           A+  A+   +  L+    ++N  D+ GWTPLH A     T I   L+  GA        D
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120

Query: 409 GLTPLDLC 416
           G T  + C
Sbjct: 121 GATAFEKC 128

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 90.0 bits (224), Expect = 6e-21
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 5/141 (3%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVD-KDGLTALHKAIIGKKQA--VTNYLLRESA 334
           W PLH  A+  +     AL++H   I A    DG TA  K    ++       YL     
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ 147

Query: 335 NPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
           +  +++      L           +      +V +  +D    T    A    +   V  
Sbjct: 148 SMGLMNSGAVYALWDYSA-EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206

Query: 395 LLIKGADKTLKNRDGLTPLDL 415
               G    +K +        
Sbjct: 207 NYF-GLFPRVKPQRSKVKHHH 226

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  124 bits (313), Expect = 1e-32
 Identities = 42/167 (25%), Positives = 62/167 (37%), Gaps = 11/167 (6%)

Query: 277 KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
            W PLH+         V+ LL+H  D     K+G T    A I     +    L + A+ 
Sbjct: 39  GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV 98

Query: 337 FVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDND----------GWTPLHLAVQA 386
              D  G T    A       A+K L     ++NL+             G T L  A + 
Sbjct: 99  NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

Query: 387 RRTDIVKLLLIK-GADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
              +++K+LL + GAD    +  G   L   L S  D+    +  LL
Sbjct: 159 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  119 bits (301), Expect = 5e-31
 Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 16/150 (10%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKD----------GLTALHKAIIGKKQAVTNYL 329
                A  G+   +  L K   ++N   K           G TAL  A       V   L
Sbjct: 108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

Query: 330 LRES-ANPFVVDEDGATLLHYAVQTASSPA----IKILLLYNVDINLQDNDGWTPLHLAV 384
           L E  A+    D  G   L +A+ ++          +LL +  D+N++   G TPL LAV
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227

Query: 385 QARRTDIVKLLLIK-GADKTLKNRDGLTPL 413
           + +   +V+ LL +   +    + DG T L
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  119 bits (301), Expect = 5e-31
 Identities = 43/149 (28%), Positives = 62/149 (41%), Gaps = 6/149 (4%)

Query: 264 NKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAI---- 318
            K               L   A  G    +  LL     D+NA D  G  AL  A+    
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 194

Query: 319 IGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLL-YNVDINLQDNDGW 377
               +A+T+ LL   A+  V  E G T L  AV+      ++ LL   +++IN  D+DG 
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254

Query: 378 TPLHLAVQARRTDIVKLLLIKGADKTLKN 406
           T L LAV+ +   I +LL  +GA     +
Sbjct: 255 TALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  119 bits (300), Expect = 8e-31
 Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 11/152 (7%)

Query: 273 ATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKD-GLTALHKAIIGKKQAVTNYLLR 331
           A  +    L     + +   V  LL+   ++N  +++ G T LH A+   ++ +   LLR
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 332 ESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDI 391
             A+P +  ++GAT    A    S   +K+ L    D+N  D  G+T    A    +   
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 392 VKLLLIKGADKTLKNRD----------GLTPL 413
           +K L  +GA+  L+ +           G T L
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  116 bits (294), Expect = 5e-30
 Identities = 42/149 (28%), Positives = 58/149 (38%), Gaps = 15/149 (10%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN---- 335
           P    A +G    +   L    D+N  D  G TA  +A +  K     +L +  AN    
Sbjct: 75  PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 134

Query: 336 ------PFVVDEDGATLLHYAVQTASSPAIKILLL-YNVDINLQDNDGWTPLHLAVQ--- 385
                    + + GAT L  A +      +KILL     D+N  DN G   L  A+    
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 194

Query: 386 -ARRTDIVKLLLIKGADKTLKNRDGLTPL 413
            +    I  LLL  GAD  ++   G TPL
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTPL 223

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 72.9 bits (180), Expect = 1e-14
 Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 280 PLHSLAASGEFYF----VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLL-RESA 334
            L     S +          LL H  D+N   + G T L  A+  K   +   LL +E  
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244

Query: 335 NPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDN 374
                D DG T L  AV+       ++L       +  D 
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  119 bits (301), Expect = 4e-32
 Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 13/144 (9%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI------IGKKQAVTNYLLR 331
           +  L +      +     L+    DI +  K+G T            I     +    L 
Sbjct: 43  YDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE 102

Query: 332 ESANPFVVDEDGATLLHYAVQTASSPAIKILLLY-------NVDINLQDNDGWTPLHLAV 384
           + A+   + +    ++   +        +++ LY        + + ++D  G T L    
Sbjct: 103 KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK 162

Query: 385 QARRTDIVKLLLIKGADKTLKNRD 408
           + ++   +K++        LK   
Sbjct: 163 RCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  115 bits (291), Expect = 9e-31
 Identities = 25/172 (14%), Positives = 56/172 (32%), Gaps = 20/172 (11%)

Query: 277 KWLPLHSLAASGEFYFVDALLKHNVDINAV---DKDGLTALHKAIIGKKQAVTNYLLRES 333
           ++  + + A  G +     L +   +              L       +  ++ +L+ + 
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 334 ANPFVVDEDGATLLHYAVQ------TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQ-- 385
           A+     ++G TL     Q      T ++   KI L    DI          +   +   
Sbjct: 66  ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125

Query: 386 ----ARRTDIVKLLLIK-GADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
                    + KL+  + G    +K++ GLT L+      +       +K++
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI----ALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 89.0 bits (221), Expect = 5e-21
 Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 13/120 (10%)

Query: 304 NAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPA----I 359
           NA+ +     +  A +         L  +           + +L+  ++  +  A     
Sbjct: 2   NAMSE--YRTVSAAAMLGTYEDFLELFEKGYED-KESVLKSNILYDVLRNNNDEARYKIS 58

Query: 360 KILLLYNVDINLQDNDGWTPLHLAVQARRTDI------VKLLLIKGADKTLKNRDGLTPL 413
             L+    DI  +  +G T      Q    DI       K+ L KGAD T   +     +
Sbjct: 59  MFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 7/97 (7%)

Query: 342 DGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQ----ARRTDIVKLLLI 397
                +  A    +      L     +   +       L+  ++      R  I   L+ 
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDK-ESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 398 KGADKTLKNRDGLTPLDLCLYSGRD--TRTFGMIKLL 432
           KGAD   + ++G T        G +  T T  + K+ 
Sbjct: 64  KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIF 100

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  117 bits (297), Expect = 5e-32
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
              L + AA G+   V  LL+   D NA+++ G   +   ++G  Q V   LL   A P 
Sbjct: 13  DAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQ-VAELLLLHGAEPN 71

Query: 338 VVDEDGATL-LHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
             D    T  +H A +      + +L      +++ D  G  P+ LA +    DI + L 
Sbjct: 72  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLH 131

Query: 397 IKGAD 401
               D
Sbjct: 132 AATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  112 bits (282), Expect = 5e-30
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 302 DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKI 361
            I+ +       L  A    +      LL   A+P  ++  G   +   +   S+   ++
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAEL 62

Query: 362 LLLYNVDINLQDNDGWT-PLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG 420
           LLL+  + N  D    T P+H A +    D + +L   GA   + +  G  P+DL    G
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG 122

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 82.5 bits (205), Expect = 3e-19
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 333 SANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV 392
           S    ++       L  A        ++ LL    D N  +  G  P+ + +      + 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60

Query: 393 KLLLIKGADKTLKNRDGLT-PL 413
           +LLL+ GA+    +   LT P+
Sbjct: 61  ELLLLHGAEPNCADPATLTRPV 82

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  119 bits (301), Expect = 7e-32
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 7/141 (4%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA-NPFV 338
           PL+    + +     AL+    DIN  +    +    A    +  +  Y+L+ +  +   
Sbjct: 42  PLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK 101

Query: 339 VDEDGATLLHYAVQTASSPAIKILLLY-NVDINLQDNDGWTPLHLAVQARR-----TDIV 392
            +  G   L  A +      +K+LL     DI+ Q++ G+T L  AV  R       DIV
Sbjct: 102 HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161

Query: 393 KLLLIKGADKTLKNRDGLTPL 413
           KLL+  GAD+++K+  G T +
Sbjct: 162 KLLMENGADQSIKDNSGRTAM 182

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  107 bits (270), Expect = 1e-27
 Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 307 DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYN 366
             +    L  A     + V   L   +     VD +G T L+ AV        K L+   
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 367 VDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA-DKTLKNRDGLTPL 413
            DINLQ++   +P   A    RT+I+  +L     D    NR G   L
Sbjct: 63  ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL 110

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  101 bits (255), Expect = 2e-25
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 280 PLHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQAVTNYLLRE-SANPF 337
           P     A G    +  +LKH   D+N  ++ G  AL  A           LL +   +  
Sbjct: 75  PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID 134

Query: 338 VVDEDGATLLHYAVQTASSPA-----IKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV 392
             ++ G T L  AV            +K+L+    D +++DN G T +  A Q   T+I 
Sbjct: 135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEIS 194

Query: 393 KLLL 396
           K+L 
Sbjct: 195 KILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 59.0 bits (144), Expect = 2e-10
 Identities = 8/43 (18%), Positives = 16/43 (37%)

Query: 371 LQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
           ++  +    L  A Q     + ++L          + +G TPL
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPL 43

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  119 bits (302), Expect = 1e-31
 Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 13/146 (8%)

Query: 280 PLHSLAA-----SGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
            LH LA      +     +  +      +N  +    T LH A+I  +  +   LL    
Sbjct: 11  FLH-LAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 69

Query: 335 NPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD------INLQDNDGWTPLHLAVQARR 388
           +P + D  G T LH A +     ++ +L            +   + +G T LHLA     
Sbjct: 70  DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129

Query: 389 TDIVKLLLIKGADKTLK-NRDGLTPL 413
             IV+LL+  GAD   +   +G T L
Sbjct: 130 LGIVELLVSLGADVNAQEPCNGRTAL 155

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  114 bits (288), Expect = 1e-29
 Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 10/119 (8%)

Query: 305 AVDKDGLTALHKAII-GKKQA---VTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIK 360
            + +DG + LH AII  +K     V   +  + A     +    T LH AV T      +
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 361 ILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL------KNRDGLTPL 413
            LL    D  L+D  G TPLHLA +      V +L        L       N +G T L
Sbjct: 63  ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  113 bits (284), Expect = 4e-29
 Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 7/143 (4%)

Query: 280 PLHSLAASGEFYFVDALLKHNVD------INAVDKDGLTALHKAIIGKKQAVTNYLLRES 333
           PLH     G    V  L +          + A + +G T LH A I     +   L+   
Sbjct: 81  PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 140

Query: 334 ANPFVVDE-DGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV 392
           A+    +  +G T LH AV   +   + +LL    D+N     G++P  L      T I 
Sbjct: 141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQ 200

Query: 393 KLLLIKGADKTLKNRDGLTPLDL 415
           + L     +      +       
Sbjct: 201 QQLGQLTLENLQMLPESEDEESY 223

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  116 bits (294), Expect = 1e-31
 Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 1/120 (0%)

Query: 301 VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIK 360
           +D    +  G T LH A I        YLL+  ++P V D  G T LH A        ++
Sbjct: 2   IDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60

Query: 361 ILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG 420
           +LL +   +N       +PLH A +    DIVKLLL  GA +   N  GL P+D      
Sbjct: 61  LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES 120

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  109 bits (276), Expect = 4e-29
 Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            LH  +  G+   V+ LL++  D N  D  G T LH+A       V   LL+  A     
Sbjct: 13  LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
                + LH A +      +K+LL Y    N  +  G  P+          ++  L  K 
Sbjct: 73  GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL-LPEKN 131

Query: 400 ADKT 403
              +
Sbjct: 132 ESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 13/58 (22%), Positives = 23/58 (39%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
             PLH  A +G    V  LL +    NAV+  GL  +        +++     +  ++
Sbjct: 77  DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  120 bits (304), Expect = 2e-31
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 2/135 (1%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH  A   +   V  LL   +D +  D  G TAL+ A+           ++++      
Sbjct: 65  PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY 124

Query: 340 DEDG-ATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
            + G  T  ++AV       +    L  +          + +H+ ++    D++ LLL  
Sbjct: 125 GKTGWKTSFYHAVMLNDVSIVS-YFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183

Query: 399 GADKTLKNRDGLTPL 413
                  N     P 
Sbjct: 184 MTSTNTNNSLLFIPD 198

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  119 bits (302), Expect = 4e-31
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 4/135 (2%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
             +   A      V  LL      N    +    LH+A   +   +   LL    +    
Sbjct: 34  ASYYAIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLFSGLDDSQF 91

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGW-TPLHLAVQARRTDIVKLLLIK 398
           D+ G T L+YAV + +   +K+ +  N  +      GW T  + AV      IV   L +
Sbjct: 92  DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE 151

Query: 399 GADKTLKNRDGLTPL 413
                      L+ +
Sbjct: 152 IPSTF-DLAILLSCI 165

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  117 bits (295), Expect = 3e-30
 Identities = 29/121 (23%), Positives = 44/121 (36%), Gaps = 5/121 (4%)

Query: 295 ALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDE-DGATLLHYAVQT 353
                + D    D  G +A + AI      +   LL   A     +  +    LH A   
Sbjct: 16  KSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL---KNLLENEFPLHQAATL 72

Query: 354 ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGL-TP 412
             +  +KILL   +D +  D+ G T L+ AV +     VKL + K        + G  T 
Sbjct: 73  EDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTS 132

Query: 413 L 413
            
Sbjct: 133 F 133

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 91.1 bits (227), Expect = 8e-21
 Identities = 15/135 (11%), Positives = 37/135 (27%), Gaps = 9/135 (6%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
             +      +   V   L             L+ +H  I      +   LL    +    
Sbjct: 132 SFYHAVMLNDVSIVSYFLSEI-PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN 190

Query: 340 DEDGAT-LLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
           +       +  A+       ++ L  Y+++I        +     V     +I K+++ K
Sbjct: 191 NSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEK 243

Query: 399 GADKTLKNRDGLTPL 413
             +    +      +
Sbjct: 244 HVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.2 bits (178), Expect = 2e-14
 Identities = 13/128 (10%), Positives = 36/128 (28%), Gaps = 13/128 (10%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLT-ALHKAIIGKKQAVTNYLLRESANPFV 338
            +H    +G    +  LL +    N  +       +  AI  K   +   L +   N + 
Sbjct: 164 CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY- 222

Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
                 +     V    +   K+++  +V+           +          + +++   
Sbjct: 223 ------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKN-----NKLDEIISKN 271

Query: 399 GADKTLKN 406
              + +  
Sbjct: 272 KELRLMYV 279

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  118 bits (299), Expect = 3e-31
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 3/144 (2%)

Query: 273 ATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRE 332
                   L   +  GEF  V  ++    D +  + +G+TALH A+      +  +L++ 
Sbjct: 33  FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92

Query: 333 SANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDG---WTPLHLAVQARRT 389
             N    D DG T LH A    +    K L+     +                 ++   T
Sbjct: 93  GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 152

Query: 390 DIVKLLLIKGADKTLKNRDGLTPL 413
              + L        + N+  +  L
Sbjct: 153 QCSQFLYGVQEKMGIMNKGVIYAL 176

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  116 bits (293), Expect = 3e-30
 Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 2/143 (1%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
            + L     +         + H + +   +   L  L  + +  +  +   ++ E  +P 
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS 64

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
           + +++G T LH AV    +  +K L+ + V++N  D+DGWTPLH A       + K L+ 
Sbjct: 65  LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124

Query: 398 KGADKTLKNR-DGLTPLDLCLYS 419
            GA        D  T  D C   
Sbjct: 125 SGAAVFAMTYSDMQTAADKCEEM 147

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  102 bits (257), Expect = 2e-25
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 1/107 (0%)

Query: 307 DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYN 366
           +  G  +L        +   +  +         +     LL  +        ++ ++   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 367 VDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
            D +L +++G T LH AV A  T+IVK L+  G +    + DG TPL
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 96.1 bits (240), Expect = 5e-23
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 6/148 (4%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
              LH+   +G    V  L++  V++NA D DG T LH A       V  +L+   A  F
Sbjct: 71  ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 130

Query: 338 VVDEDG---ATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
            +       A      ++   +   + L      + + +      L         +   L
Sbjct: 131 AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE---L 187

Query: 395 LLIKGADKTLKNRDGLTPLDLCLYSGRD 422
            + +G   T+ +R+    ++       D
Sbjct: 188 PMKEGDCMTIIHREDEDEIEWWWARLND 215

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 16/122 (13%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGL---TALHKAIIGKKQAVTNYLLRESA 334
           W PLH  A+         L++    + A+    +       + +       + +L     
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163

Query: 335 NPFVVDEDGATLLHYAVQ-----TASSPAIKILLLYNVDI--------NLQDNDGWTPLH 381
              ++++     L                  + +++  D          L D +G+ P +
Sbjct: 164 KMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRN 223

Query: 382 LA 383
           L 
Sbjct: 224 LL 225

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  117 bits (296), Expect = 6e-31
 Identities = 39/172 (22%), Positives = 61/172 (35%), Gaps = 19/172 (11%)

Query: 280 PLHSLAASGEFYFVDALLK-HNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
           PL   A   +   +  LLK    +++     G TALH A +         L+  +     
Sbjct: 6   PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65

Query: 339 V-----DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDND-------------GWTPL 380
                   +G T LH AV   +   ++ LL     ++ +                G  PL
Sbjct: 66  EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL 125

Query: 381 HLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
             A      +IV+LL+  GAD   ++  G T L + +     T    M  LL
Sbjct: 126 SFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLL 177

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 96.1 bits (240), Expect = 4e-23
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 310 GLTALHKAII-GKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD 368
             + L  A      QA++  L  E          G T LH A    +  A  +L+    +
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 369 I-----NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
           +       +  +G T LH+AV  +  ++V+ LL +GA  + +    +    
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYR 113

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  114 bits (288), Expect = 7e-30
 Identities = 39/142 (27%), Positives = 63/142 (44%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            LH   ++G    V+ LL+  V +N  D  G + LH A       +   LL + A+   V
Sbjct: 43  ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           +++G T LHYA          +LL    + + +D+   T +H A       +V +LL   
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162

Query: 400 ADKTLKNRDGLTPLDLCLYSGR 421
           A   +++ +G TPL L     R
Sbjct: 163 ASTNIQDTEGNTPLHLACDEER 184

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  110 bits (276), Expect = 4e-28
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 1/144 (0%)

Query: 279 LPLHSLAASGEFY-FVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           + + +LA SG+     + +L         D+D  TALH A       +  +LL+      
Sbjct: 8   IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
             D+ G + LH A        +K LL+    +N  + +G TPLH A    R +I  +LL 
Sbjct: 68  DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127

Query: 398 KGADKTLKNRDGLTPLDLCLYSGR 421
            GA+   K+    T +      G 
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGN 151

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  107 bits (268), Expect = 4e-27
 Identities = 53/155 (34%), Positives = 75/155 (48%), Gaps = 6/155 (3%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           W PLH  A++G    V ALL     +NAV+++G T LH A    +  +   LL   ANP 
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
             D   AT +H A    +   + ILL Y    N+QD +G TPLHLA    R +  K L+ 
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193

Query: 398 KGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
           +GA   ++N++  TPL +           G+I   
Sbjct: 194 QGASIYIENKEEKTPLQVA------KGGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  101 bits (254), Expect = 4e-25
 Identities = 36/113 (31%), Positives = 56/113 (49%)

Query: 309 DGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD 368
             +   + A  GK   +   +L + +     D+D  T LH+A     +  ++ LL   V 
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGR 421
           +N +D+ GW+PLH+A  A   +IVK LL+KGA     N++G TPL       R
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 99.2 bits (247), Expect = 4e-24
 Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 2/145 (1%)

Query: 257 KEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHK 316
            E    L  K  H+         PLH  A+         LL+   + +A D    TA+H+
Sbjct: 86  DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHR 145

Query: 317 AIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDG 376
           A       + + LL   A+  + D +G T LH A         K L+     I +++ + 
Sbjct: 146 AAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEE 205

Query: 377 WTPLHLAVQARRTDIVKLLLIKGAD 401
            TPL +A       ++   L +G +
Sbjct: 206 KTPLQVA--KGGLGLILKRLAEGEE 228

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.2 bits (125), Expect = 6e-08
 Identities = 7/40 (17%), Positives = 16/40 (40%)

Query: 374 NDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
                  +LA   +  ++ + +L   +  T  ++D  T L
Sbjct: 5   VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTAL 44

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  110 bits (279), Expect = 9e-30
 Identities = 35/111 (31%), Positives = 44/111 (39%)

Query: 305 AVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLL 364
            +          A+           + +  +     E G   LHYA        ++ LLL
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 365 YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
              DIN  D    TPL  AV       VKLLL KGADKT+K  DGLT  + 
Sbjct: 62  KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 94.4 bits (236), Expect = 1e-23
 Identities = 23/116 (19%), Positives = 41/116 (35%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
                    +G+   V   +    D+N   + G   LH A    +  +  +LL + A+  
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVK 393
             D+   T L  AV       +K+LL    D  ++  DG T            +++
Sbjct: 68  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  109 bits (274), Expect = 9e-29
 Identities = 34/117 (29%), Positives = 54/117 (46%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            L   A +G+   V  L+ +  D+NA D+ GLT L+ A       +   LL+  A+   V
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
           D  G T LH A         ++LL +  D+N QD  G T   +++     D+ ++L 
Sbjct: 77  DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  105 bits (265), Expect = 2e-27
 Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 7/120 (5%)

Query: 294 DALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQT 353
                H  D+          L +A    +      L+   A+    DE G T L+ A   
Sbjct: 5   HHHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH 57

Query: 354 ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
                +++LL    D+N  D  G+TPLHLA      +I ++LL  GAD   +++ G T  
Sbjct: 58  GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  108 bits (273), Expect = 1e-28
 Identities = 48/121 (39%), Positives = 64/121 (52%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH  A +G    V  LL+   D+NA DK+G T LH A       V   LL   A+    
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           D++G T LH A +      +K+LL    D+N +D +G TPLHLA +    ++VKLLL  G
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

Query: 400 A 400
           A
Sbjct: 125 A 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  103 bits (260), Expect = 5e-27
 Identities = 41/105 (39%), Positives = 57/105 (54%)

Query: 309 DGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD 368
           +G T LH A       V   LL   A+    D++G T LH A +      +K+LL    D
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
           +N +D +G TPLHLA +    ++VKLLL  GAD   K+++G TPL
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 105

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  107 bits (271), Expect = 1e-28
 Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 302 DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKI 361
                 KDG T LH A           LL + A+     +DG T LH A +   +  +K+
Sbjct: 3   MWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 362 LLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
           LL    D+N +  DG TP HLA +    +IVKLL  KGAD   ++       
Sbjct: 61  LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 90.1 bits (225), Expect = 3e-22
 Identities = 31/104 (29%), Positives = 43/104 (41%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
             PLH+ A +G    V  LL    D+NA  KDG T LH A       +   LL + A+  
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLH 381
              +DG T  H A +      +K+L     D+N +        H
Sbjct: 70  ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 65.1 bits (160), Expect = 3e-13
 Identities = 20/45 (44%), Positives = 25/45 (55%)

Query: 369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
                 DG TPLH A +    + VK LL KGAD   +++DG TPL
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPL 46

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 62.4 bits (153), Expect = 3e-12
 Identities = 20/72 (27%), Positives = 27/72 (37%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
             PLH  A +G    V  LL    D+NA  KDG T  H A       +   L  + A+  
Sbjct: 43  NTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102

Query: 338 VVDEDGATLLHY 349
                 +   H+
Sbjct: 103 ARSWGSSHHHHH 114

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  108 bits (270), Expect = 1e-26
 Identities = 36/156 (23%), Positives = 52/156 (33%), Gaps = 20/156 (12%)

Query: 280 PLHSLAASGEFY----FVDALLKHNVDINAVDKDGLTALHKAII-----GKKQAVTNY-- 328
            L     S   Y    F   L      +   D    T LH  II     G   A   Y  
Sbjct: 167 CLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD 226

Query: 329 -----LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYN----VDINLQDNDGWTP 379
                ++++   P     +               +I   L         +N QD++G T 
Sbjct: 227 ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC 286

Query: 380 LHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
           L++A +     IV  LL  GAD  + N+ GL P+D 
Sbjct: 287 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF 322

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 90.9 bits (225), Expect = 2e-20
 Identities = 33/184 (17%), Positives = 56/184 (30%), Gaps = 14/184 (7%)

Query: 237 SGNYDPPDKKSDGPRRKLFTKEEKVLL-NKKLPHLATATSKKWLPLHSLAASGEFYFVDA 295
           +  +D        P + +      V+  N++   L          L  L          +
Sbjct: 29  TFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAF-------LQRLLFPEIQEMPTS 81

Query: 296 LLKHNVDINAVDKDGLTALHKAII-GKKQAVTNYLLRESANP-FVVDEDGATLLHYAVQT 353
           L   + + N+                  Q V +       N    VDE G T LH+    
Sbjct: 82  LNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI 141

Query: 354 ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQAR----RTDIVKLLLIKGADKTLKNRDG 409
           A+   +K L+ +  +    DN G + L  AV++           LL        L++   
Sbjct: 142 ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN 201

Query: 410 LTPL 413
            T L
Sbjct: 202 RTIL 205

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 85.5 bits (211), Expect = 1e-18
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 2/143 (1%)

Query: 295 ALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHY-AVQT 353
           AL    V+ N         L + +  + Q +   L  +S+N             + +  +
Sbjct: 48  ALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDS 107

Query: 354 ASSPAIKILLLYNVDINLQ-DNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTP 412
                        +++N+  D  G TPLH        ++VK L+  G+++   +  G + 
Sbjct: 108 LLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC 167

Query: 413 LDLCLYSGRDTRTFGMIKLLKQL 435
           L   + S  +  +     LL  L
Sbjct: 168 LVKAVKSVNNYDSGTFEALLDYL 190

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 70.4 bits (172), Expect = 2e-13
 Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 16/140 (11%)

Query: 262 LLNKKLPHLATATSKKWLPLHSLA---------ASGEFYF---VDALLKHNVDINAVDKD 309
           LL+   P L    S     LH +          A+ ++Y    +  ++K          +
Sbjct: 186 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 245

Query: 310 GLTALHKAIIGKKQAVTNYLLRESANPFVV----DEDGATLLHYAVQTASSPAIKILLLY 365
              +      G+++      L        +    D +G T L+ A +  +   +  LL Y
Sbjct: 246 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY 305

Query: 366 NVDINLQDNDGWTPLHLAVQ 385
             D  + +  G  P+     
Sbjct: 306 GADPFIANKSGLRPVDFGAG 325

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 94.6 bits (236), Expect = 8e-24
 Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 7/109 (6%)

Query: 325 VTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAV 384
            ++ L+   ++   +  D    L  A +      ++IL+    D+  +D +G TPLHLA 
Sbjct: 9   HSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA 65

Query: 385 QARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK 433
           +    ++VKLLL  GAD   +++ G T  D+ + +G +     + ++L+
Sbjct: 66  RNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNED----LAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 24/88 (27%), Positives = 36/88 (40%)

Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
           S     L   A +G+   V  L+ +  D+ A DK+G T LH A       V   LL   A
Sbjct: 22  SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81

Query: 335 NPFVVDEDGATLLHYAVQTASSPAIKIL 362
           +    D+ G T    ++   +    +IL
Sbjct: 82  DVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 98.7 bits (246), Expect = 2e-23
 Identities = 37/183 (20%), Positives = 59/183 (32%), Gaps = 39/183 (21%)

Query: 280 PLHSLAASGEFYFVDALL-------KHNVDINAVDKD-GLTALHKAIIGKKQ---AVTNY 328
            +    A      +++LL       K   D    D + G T L KA++            
Sbjct: 16  SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75

Query: 329 LLRESANPFVV-----------DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDND-- 375
           LL  +     +              G T LH A++  +   + +L+    D+    N   
Sbjct: 76  LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135

Query: 376 ------------GWTPLHLAVQARRTDIVKLLLIKG---ADKTLKNRDGLTPLDLCLYSG 420
                       G  PL LA    +  IVK LL      AD + ++  G T L   +   
Sbjct: 136 FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVA 195

Query: 421 RDT 423
            +T
Sbjct: 196 DNT 198

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 91.0 bits (226), Expect = 7e-21
 Identities = 27/167 (16%), Positives = 51/167 (30%), Gaps = 40/167 (23%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKD--------------GLTALHKAIIGKKQAV 325
            LH          V  L+++  D+ A                  G   L  A    + A+
Sbjct: 104 ALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163

Query: 326 TNYLLR---ESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNV--------------- 367
             +LL+   + A+    D  G T+LH  V+ A +       + ++               
Sbjct: 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL 223

Query: 368 -DINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
               + +  G TPL LA  + +  ++  +L +               
Sbjct: 224 KLEEITNRKGLTPLALAASSGKIGVLAYILQREI-------HEPECR 263

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 68.3 bits (167), Expect = 5e-13
 Identities = 23/127 (18%), Positives = 36/127 (28%), Gaps = 26/127 (20%)

Query: 278 WLPLHSLAASGEFYFVDALLKH---NVDINAVDKDGLTALHKA-IIGKKQAVTN------ 327
            LPL   A + +   V  LL++     DI+A D  G T LH    +              
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208

Query: 328 ---------YLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWT 378
                     L        + +  G T L  A  +     +  +L        ++     
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ-------REIHEPE 261

Query: 379 PLHLAVQ 385
             H A  
Sbjct: 262 CRHAAAH 268

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 22/103 (21%)

Query: 333 SANPFVVDEDGATLLHYAVQTASSPAIKILLLY-------NVDINLQDND-GWTPLHLAV 384
           SA            +  AV  ++   ++ LL +         D   +D + G T L  A+
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 385 QARR---TDIVKLLLIKGADK-----------TLKNRDGLTPL 413
                   D + LLL                 T     G T L
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTAL 105

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 96.4 bits (240), Expect = 6e-23
 Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 33/152 (21%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVD-------------KDGLTALHKAIIGKKQA 324
              LH          V  L+++  D++                  G   L  A   K+  
Sbjct: 91  HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150

Query: 325 VTNYLLR---ESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLH 381
           V  YLL    + A+    D  G T+LH  V                 +   ++   + L 
Sbjct: 151 VVTYLLENPHQPASLEATDSLGNTVLHALV-----------------MIADNSPENSALV 193

Query: 382 LAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
           + +      +   L      + + N  GLTPL
Sbjct: 194 IHMYDGLLQMGARLCPTVQLEEISNHQGLTPL 225

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 93.3 bits (232), Expect = 7e-22
 Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 38/182 (20%)

Query: 280 PLHSLAASGEFYFVDALLKH--------NVDINAVDKDGLTALHKAIIGKKQ---AVTNY 328
            L S+ + G    +  LL++                  G T L KA++  +    A    
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 329 LLRESANPFVV-----------DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDN--- 374
           LL+   +                  G + LH A++  S   +K+L+    D++L+     
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124

Query: 375 ----------DGWTPLHLAVQARRTDIVKLLL---IKGADKTLKNRDGLTPLDLCLYSGR 421
                      G  PL LA   ++ D+V  LL    + A     +  G T L   +    
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184

Query: 422 DT 423
           ++
Sbjct: 185 NS 186

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 10/85 (11%)

Query: 269 HLATATSKK---WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAV 325
           H     +        L      G       L          +  GLT L  A    K  +
Sbjct: 177 HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI 236

Query: 326 TNYLLRESANPFVVDEDGATLLHYA 350
             ++L+   +       GA   H+ 
Sbjct: 237 FRHILQREFS-------GAAAHHHH 254

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 93.7 bits (233), Expect = 6e-22
 Identities = 40/166 (24%), Positives = 57/166 (34%), Gaps = 37/166 (22%)

Query: 300 NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN--------------PFVVDEDGAT 345
           N     V   G TALH AI  + +     L+ + A+                     G  
Sbjct: 83  NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGEL 142

Query: 346 LLHYAVQTASSPAIKILL---LYNVDINLQDNDGWTPLHLAVQAR---------RTDIVK 393
            L  A  T     +  L        D+  QD+ G T LH  V             T +  
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202

Query: 394 LLLIKGAD-------KTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
           LLLIK A        + L N DGL+PL +   +G+     G+ + +
Sbjct: 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK----IGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 89.1 bits (221), Expect = 2e-20
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 33/155 (21%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDK--------------DGLTALHKAIIGKKQAV 325
            LH        ++V+ L++   D++A  +               G   L  A    +  +
Sbjct: 96  ALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI 155

Query: 326 TNYLL---RESANPFVVDEDGATLLHYAVQTAS---------SPAIKILLLYNVDIN--- 370
            +YL     + A+    D  G T+LH  V  A          +    +LL+    +    
Sbjct: 156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215

Query: 371 ----LQDNDGWTPLHLAVQARRTDIVKLLLIKGAD 401
               L +NDG +PL +A +  +  I + ++ +   
Sbjct: 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 88.7 bits (220), Expect = 4e-20
 Identities = 37/185 (20%), Positives = 61/185 (32%), Gaps = 41/185 (22%)

Query: 280 PLHSLAASGEFY----FVDALLKHNVDINAVD----KDGLTALHKAII----GKKQAVTN 327
            L  + + G        +  LL H   +   +      G T L KA++    G+   +  
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP- 66

Query: 328 YLLRESANPFVV-----------DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDN-- 374
            LL  +     +              G T LH A++      +++L+    D++ Q    
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 375 ------------DGWTPLHLAVQARRTDIVKLLLIKG---ADKTLKNRDGLTPLDLCLYS 419
                        G  PL LA    +  IV  L   G   AD   ++  G T L   +  
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAI 186

Query: 420 GRDTR 424
             +TR
Sbjct: 187 ADNTR 191

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 19/118 (16%)

Query: 278 WLPLHSLAASGEFYFVDALLKH---NVDINAVDKDGLTALHKAIIGKKQ---------AV 325
            LPL   A + + + V  L ++     D+   D  G T LH  +               +
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200

Query: 326 TNYLLRESAN-------PFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDG 376
            + LL + A          +++ DG + L  A +T      + ++   +      +  
Sbjct: 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHH 258

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 87.4 bits (218), Expect = 2e-21
 Identities = 35/92 (38%), Positives = 48/92 (52%)

Query: 309 DGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD 368
           +G T LH A       V   LL   A+    D++G T LH A +      +K+LL    D
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
           +N +D +G TPLHLA +    ++VKLLL  GA
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 83.6 bits (208), Expect = 4e-20
 Identities = 31/72 (43%), Positives = 44/72 (61%)

Query: 342 DGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD 401
           +G T LH A +      +K+LL    D+N +D +G TPLHLA +    ++VKLLL  GAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 402 KTLKNRDGLTPL 413
              K+++G TPL
Sbjct: 61  VNAKDKNGRTPL 72

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 45.4 bits (109), Expect = 1e-06
 Identities = 22/57 (38%), Positives = 26/57 (45%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
             PLH  A +G    V  LL+   D+NA DK+G T LH A       V   LL   A
Sbjct: 36  RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 86.6 bits (214), Expect = 4e-19
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 330 LRESANPFVVDEDGATLLHYAVQTA---SSPAIKILLLYNVDINLQDNDGWTPLHLAVQA 386
             +             +LH AV+ A   S P +  ++     ++ +  DG T LH A   
Sbjct: 177 FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALY 236

Query: 387 RRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
            + D +KLLL   A     N  G T LD+
Sbjct: 237 NQPDCLKLLLKGRALVGTVNEAGETALDI 265

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 74.3 bits (182), Expect = 6e-15
 Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 14/175 (8%)

Query: 237 SGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDAL 296
           S     P  +SD   R+ +   + V                   L +   + +   V   
Sbjct: 116 SHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEPQ-----RLWTAICNRDLLSVLEA 170

Query: 297 LKHNVDINAVDK------DGLTALHKAIIGKKQA---VTNYLLRESANPFVVDEDGATLL 347
             +  D                 LH A+    QA   + +++++   +      DG T L
Sbjct: 171 FANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230

Query: 348 HYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402
           HYA        +K+LL     +   +  G T L +A +    +  +LL    A  
Sbjct: 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT 285

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 17/94 (18%), Positives = 26/94 (27%), Gaps = 13/94 (13%)

Query: 348 HYAVQTASSPAIKILLLYNVDINLQDN------DGWTPLHLAVQA---RRTDIVKLLLIK 398
             A+      ++        D                 LHLAV+        +V  ++  
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215

Query: 399 GADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
           G     K  DG T L       +       +KLL
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQP----DCLKLL 245

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 81.2 bits (200), Expect = 2e-17
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 330 LRESANPFVVDEDGATLLHYAVQTASSPAIKI---LLLYNVDINLQDNDGWTPLHLAVQA 386
           L E        E   T LH AV++    ++ I   L+  + +++ Q   G T LH     
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215

Query: 387 RRTDIVKLLLIKGADKTLKNRDGLTPLDLC 416
              + +KLLL   A   + N  G TPLD+ 
Sbjct: 216 DNAECLKLLLRGKASIEIANESGETPLDIA 245

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 80.0 bits (197), Expect = 4e-17
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 10/169 (5%)

Query: 237 SGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDAL 296
           S +   P+  SD   RK +    K +  +        T+ K   L     + + + +   
Sbjct: 91  SEDPVKPNPGSDMIARKDYITA-KYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQA 149

Query: 297 LKHNVDINAVDK------DGLTALHKAIIGKKQ---AVTNYLLRESANPFVVDEDGATLL 347
               VD+              TALH A+    +    + ++L++ S N       G+T L
Sbjct: 150 YADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL 209

Query: 348 HYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
           HY   T ++  +K+LL     I + +  G TPL +A + +     +LL 
Sbjct: 210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 67.7 bits (165), Expect = 6e-13
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 269 HLATATSKKWLPLHSLAASGE---FYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAV 325
            LA         LH    S +    + VD L++++ +++     G TALH   +      
Sbjct: 161 PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220

Query: 326 TNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLY 365
              LLR  A+  + +E G T L  A +       ++L   
Sbjct: 221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.1 bits (109), Expect = 8e-06
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 13/94 (13%)

Query: 350 AVQTASSPAIKILLLYNVDINLQDN------DGWTPLHLAVQA---RRTDIVKLLLIKGA 400
           AV+T     +       VD+  +           T LHLAV++       IV  L+    
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196

Query: 401 DKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434
           +   +   G T L  C  +         +KLL +
Sbjct: 197 NLDKQTGKGSTALHYCCLTDN----AECLKLLLR 226

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 79.1 bits (194), Expect = 2e-16
 Identities = 26/84 (30%), Positives = 37/84 (44%)

Query: 332 ESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDI 391
              N     +D AT L  A    S  A + LL    ++N  D+ G  PLH A     T +
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283

Query: 392 VKLLLIKGADKTLKNRDGLTPLDL 415
             L L +GAD   ++ +G  PL +
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTI 307

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 68.3 bits (166), Expect = 1e-12
 Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 4/121 (3%)

Query: 296 LLKHNVDINAV--DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQT 353
            L H  D+N V   +D  T L +A          +LL+  AN    D  G   LH+A   
Sbjct: 219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278

Query: 354 ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
             +    + L    D+  +D++G  PL +A++    DIV LL +  A             
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL--AKMREAEAAQGQAG 336

Query: 414 D 414
           D
Sbjct: 337 D 337

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 61.0 bits (147), Expect = 3e-10
 Identities = 22/85 (25%), Positives = 38/85 (44%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PL    A+      + LL++  ++N  D  G   LH A I     +    L+  A+    
Sbjct: 238 PLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297

Query: 340 DEDGATLLHYAVQTASSPAIKILLL 364
           D +G   L  A++TA++  + +L L
Sbjct: 298 DSEGRDPLTIAMETANADIVTLLRL 322

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 26/122 (21%), Positives = 36/122 (29%), Gaps = 6/122 (4%)

Query: 313 ALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQ 372
              K  I  +           +        GA L   +    S P +   L +  D+N  
Sbjct: 170 VPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWV 229

Query: 373 --DNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIK 430
               D  TPL  A  A      + LL  GA+    +  G  PL      G      G+  
Sbjct: 230 NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHT----GLAC 285

Query: 431 LL 432
           L 
Sbjct: 286 LF 287

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 78.8 bits (194), Expect = 7e-16
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 330 LRESANPFVVDEDGATLLHYAVQTASS---PAIKILLLYNVDINLQDNDGWTPLHLAVQA 386
             +             +LH AV+ A+    P +  ++     ++ +  DG T LH A   
Sbjct: 158 FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALY 217

Query: 387 RRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434
            + D +KLLL   A     N  G T LD+     R        +LL+Q
Sbjct: 218 NQPDCLKLLLKGRALVGTVNEAGETALDIA----RKKHHKECEELLEQ 261

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 62.6 bits (152), Expect = 9e-11
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 9/109 (8%)

Query: 296 LLKHNVDINAV------DKDGLTALHKAII---GKKQAVTNYLLRESANPFVVDEDGATL 346
              +  D                 LH A+         + +++++   +      DG T 
Sbjct: 151 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 210

Query: 347 LHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
           LHYA        +K+LL     +   +  G T L +A +    +  +LL
Sbjct: 211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 60.3 bits (146), Expect = 5e-10
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 4/107 (3%)

Query: 259 EKVLLNKKLPHLATATSKKWLPLH---SLAASGEFYFVDALLKHNVDINAVDKDGLTALH 315
                 + LP    A + + L LH    +A       VD ++++   ++A   DG TALH
Sbjct: 154 NGQDFGQPLPG-PDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 212

Query: 316 KAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKIL 362
            A +  +      LL+  A    V+E G T L  A +       ++L
Sbjct: 213 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 76.1 bits (187), Expect = 3e-15
 Identities = 21/174 (12%), Positives = 42/174 (24%), Gaps = 23/174 (13%)

Query: 260 KVLLNKKL-PHLATATSKKWLPLHSLAAS-GEFYFVDALLKHNVDINAVDKDGLTALHKA 317
             L         A   ++ +      A   G    ++ LL   V +   +        K 
Sbjct: 180 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKY 239

Query: 318 II------GKKQAVTNYLLRESANPFVVD-------EDGATLLHYAVQTASSPAIKIL-- 362
           +         +    +   + S    V D         G  +L   ++      +  +  
Sbjct: 240 VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRF 299

Query: 363 ------LLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGL 410
                 +           D    L LA++        LLL   +   L   +  
Sbjct: 300 LLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNY 353

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 68.0 bits (166), Expect = 1e-12
 Identities = 18/150 (12%), Positives = 38/150 (25%), Gaps = 8/150 (5%)

Query: 276 KKWLPLHSLAASGEFYFVD---ALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRE 332
           K  +     A +G    +D    LL  +  +  +  +   A   A       V N L   
Sbjct: 91  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 150

Query: 333 SANPFVVD--EDGATLLHYAVQTASSPAIKILLLYNVD---INLQDNDGWTPLHLAVQAR 387
           +    +     +       A +      +  L           +Q  + +     AV   
Sbjct: 151 APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 210

Query: 388 RTDIVKLLLIKGADKTLKNRDGLTPLDLCL 417
             +++  LL                 +  +
Sbjct: 211 HHNVINFLLDCPVMLAYAEIHEFEYGEKYV 240

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 67.3 bits (164), Expect = 2e-12
 Identities = 17/136 (12%), Positives = 38/136 (27%), Gaps = 13/136 (9%)

Query: 283 SLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDED 342
           SL        +   L    ++  V +  L  L+ A           L  ++         
Sbjct: 40  SLMTLSYKEAIHIFLPGTKNMEQVRQ--LLCLYYA---HYNRNAKQLWSDAHKK---GIK 91

Query: 343 GATLLHYAVQTASSPA---IKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
              +   A  T  S A   + +LL  +  + +   + +    LA +     ++  L    
Sbjct: 92  SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA 151

Query: 400 ADKTLKN--RDGLTPL 413
             + +     +     
Sbjct: 152 PTEIMAMIQAENYHAF 167

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 11/101 (10%)

Query: 304 NAVDKDGLTALHKAIIGKKQAVTNYL--------LRESANPFVVDEDGATLLHYAVQTAS 355
            +    G   L   I    + + + +        ++  A    +  D   LL  A++  +
Sbjct: 272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 331

Query: 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
             A  +LL     + L   + +   ++     R D+  + L
Sbjct: 332 QGACALLLSIPSVLALTKANNY---YINETGGRLDLRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 17/152 (11%), Positives = 36/152 (23%), Gaps = 13/152 (8%)

Query: 260 KVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDK--DGLTALHKA 317
            +LL      +    ++ +      A +G  + ++ L +            +   A   A
Sbjct: 112 CLLLTSD-EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA 170

Query: 318 IIGKKQAVTNYLLRESANPFVVD---EDGATLLHYAVQTASSPAIKILLLYNVDINLQDN 374
                  V N L   +          E+       AV       I  LL   V +   + 
Sbjct: 171 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI 230

Query: 375 DGWTPLHLAVQARRTDIVKLLLIKGADKTLKN 406
             +             +   +          +
Sbjct: 231 HEFEYGEK-------YVNPFIARHVNRLKEMH 255

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 65/530 (12%), Positives = 124/530 (23%), Gaps = 175/530 (33%)

Query: 14  FPHSLHSP-PQSKFHKLFPSQPLNLPTAATTKLYSLSPLQQEPDYLL--LQNEDRVIGDC 70
             H + S    S   +LF +  L        + +    L+    +L+  ++ E R     
Sbjct: 51  IDHIIMSKDAVSGTLRLFWT--LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR--QPS 106

Query: 71  LVFEEGVFEDPYLENDNVP-PPRKPRRSRGKQNVVQVEAENLVPDKW----------KQV 119
           ++    + +   L NDN         R +     ++     L P K           K  
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 120 QEELNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL-SQLNPPLV- 177
                +         +Q +   ++      +L L + +  E +     KL  Q++P    
Sbjct: 166 -----VALDVCLSYKVQCKMDFKIF-----WLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 178 -LDKPSTFPTDAKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGL---DDVS- 232
             D  S        S +                          K   Y   L    +V  
Sbjct: 216 RSDHSSNIKLR-IHSIQAELRRLL-------------------KSKPYENCLLVLLNVQN 255

Query: 233 ----EFFNSG-------------NYDPPDKKSD---GPRRKLFTKEE------KVLLNK- 265
                 FN               ++      +           T +E      K L  + 
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 266 -KLPHLATATSKKWLPLH-SLAASGEFYFVDALLKHNVD-INAVDKDGLTALHKAIIGKK 322
             LP     T+    P   S+ A          ++  +   +         L   I   +
Sbjct: 316 QDLPREVLTTN----PRRLSIIA--------ESIRDGLATWDNWKHVNCDKLTTII---E 360

Query: 323 QAVTN---------Y----LLRESAN-------------PFVVDEDGATLLH-------- 348
            ++           +    +   SA+                        LH        
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 349 --------------YAVQTASSPAI--KILLLYNVDINLQDNDGWTPL-----------H 381
                           V+  +  A+   I+  YN+      +D   P            H
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 382 L--AVQARRTDIVKLLL---------IKGADKTLKNRDGLTPL--DLCLY 418
           L       R  + +++          I+           +      L  Y
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 9e-05
 Identities = 50/340 (14%), Positives = 102/340 (30%), Gaps = 102/340 (30%)

Query: 101 QNVVQVEAENLVPD-KWKQVQEELN--LTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLD 157
           ++++ V  +  V +   K VQ+     L+K+E   I   I     V           +L 
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI---IMSKDAVS---GTLRLFWTL- 71

Query: 158 LKEYLAYKEAKLSQLNPPLVLDKPSTFPTDAKESEEDRDCGFQDFVNSSSSTCTQRVPPK 217
                               L K         E     +  F   ++   +   Q     
Sbjct: 72  --------------------LSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMT 109

Query: 218 NPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKK 277
                +Y   ++     +N         K +  R + + K  + LL  + P        K
Sbjct: 110 R----MY---IEQRDRLYNDN---QVFAKYNVSRLQPYLKLRQALLELR-PA-------K 151

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
            + +  +  SG                   K  +               +Y + +    F
Sbjct: 152 NVLIDGVLGSG-------------------KTWVAL---------DVCLSYKV-QCKMDF 182

Query: 338 VVDEDGATLLHYA-VQTASSPA--IKIL--LLYNVDINL-QDNDGWTPLHLAVQARRTDI 391
            +         +  ++  +SP   +++L  LLY +D N    +D  + + L + + + ++
Sbjct: 183 KI--------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 392 VKLLLIKGADKTL------KNRDGLTPLDL-C--LYSGRD 422
            +LL  K  +  L      +N       +L C  L + R 
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	439
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.98
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.76
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75
2d6f_A	435	Glutamyl-tRNA(Gln) amidotransferase subunit D; lig	98.41
2him_A	358	L-asparaginase 1; hydrolase; 1.82A {Escherichia co	98.4
1zq1_A	438	Glutamyl-tRNA(Gln) amidotransferase subunit D; X-R	98.4
1wls_A	328	L-asparaginase; structural genomics, hydrolase; 2.	98.39
4pga_A	337	Glutaminase-asparaginase; bacterial amidohydrolase	98.28
1nns_A	326	L-asparaginase II; amidrohydrolase, crystallograph	98.24
1wsa_A	330	Asparaginase, asparagine amidohydrolase; periplasm	98.2
3nxk_A	334	Cytoplasmic L-asparaginase; structural genomics, c	98.15
1agx_A	331	Glutaminase-asparaginase; bacterial amidohydrolase	98.1
2wlt_A	332	L-asparaginase; hydrolase; 1.40A {Helicobacter pyl	98.02
1o7j_A	327	L-asparaginase; atomic resolution, hydrolase; 1.0A	97.58

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6.9e-39  Score=300.06  Aligned_cols=224  Identities=25%  Similarity=0.302  Sum_probs=215.9

Q ss_pred             CCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHH
Q 013643          210 CTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHS  283 (439)
Q Consensus       210 ~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~  283 (439)
                      ...+..|.||||.|+..|+.+++++|++.|++++..+ ..|.|||+      +.+++++|++.+++++..+..|.||||+
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   83 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCS-EDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL   83 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccC-CCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Confidence            4566789999999999999999999999999999998 89999999      7889999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCC-CCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHH
Q 013643          284 LAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKIL  362 (439)
Q Consensus       284 Aa~~g~~eivk~LL~~g-adin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~L  362 (439)
                      |+..|+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|
T Consensus        84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  163 (237)
T 3b7b_A           84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL  163 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            99999999999999998 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhc
Q 013643          363 LLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ  434 (439)
Q Consensus       363 l~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~  434 (439)
                      +++|++++..|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..|+...+.++++.|.+
T Consensus       164 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d  235 (237)
T 3b7b_A          164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD  235 (237)
T ss_dssp             HTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999999999999999999888888888865

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.9e-39  Score=308.46  Aligned_cols=223  Identities=19%  Similarity=0.194  Sum_probs=180.4

Q ss_pred             CCCCCCCcHHHHHHhcC-------------cHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcc
Q 013643          211 TQRVPPKNPKWAVYGRG-------------LDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLA  271 (439)
Q Consensus       211 ~~~~~g~t~l~~A~~~g-------------~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~  271 (439)
                      ..+..|+||||.|+..|             +.+++++|++.|++++......|.||||      ..+++++|++.|++++
T Consensus         5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~   84 (253)
T 1yyh_A            5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN   84 (253)
T ss_dssp             -----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            45667999999999977             8999999999999997664389999999      7889999999999999


Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHH
Q 013643          272 TATSKKWLPLHSLAASGEFYFVDALLKHNV-DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYA  350 (439)
Q Consensus       272 ~~d~~g~tpLh~Aa~~g~~eivk~LL~~ga-din~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A  350 (439)
                      ..+..|+||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus        85 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A  164 (253)
T 1yyh_A           85 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA  164 (253)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            999999999999999999999999999987 8999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHH
Q 013643          351 VQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIK  430 (439)
Q Consensus       351 ~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik  430 (439)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..|+.    +|++
T Consensus       165 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~----~i~~  240 (253)
T 1yyh_A          165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH----DIVR  240 (253)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH----HHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCH----HHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999996    9999


Q ss_pred             HHhcCCC
Q 013643          431 LLKQLPT  437 (439)
Q Consensus       431 ~L~~~~~  437 (439)
                      +|.+...
T Consensus       241 ~l~~~~~  247 (253)
T 1yyh_A          241 LLDLEHH  247 (253)
T ss_dssp             HHHC---
T ss_pred             HHHHHhh
Confidence            9987543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-37  Score=297.22  Aligned_cols=221  Identities=23%  Similarity=0.220  Sum_probs=212.0

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHH
Q 013643          213 RVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAA  286 (439)
Q Consensus       213 ~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~  286 (439)
                      +..|.||||.|+..|+.+++++|++.|++++..+ ..|.|||+      +.+++++|++.+++++..+..|+||||+|+.
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  114 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK-KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV  114 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHH
Confidence            5678999999999999999999999999999998 89999999      7889999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCccc----------CCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCC
Q 013643          287 SGEFYFVDALLKHNVDINAV----------DKDGLTALHKAIIGKKQAVTNYLLRE-SANPFVVDEDGATLLHYAVQTAS  355 (439)
Q Consensus       287 ~g~~eivk~LL~~gadin~~----------d~~g~t~L~~Aa~~g~~~iv~~LL~~-ga~v~~~d~~g~TpLh~A~~~g~  355 (439)
                      .|+.+++++|+++|++++..          +..|.||||+|+..|+.+++++|+++ |++++.++..|.||||+|+..++
T Consensus       115 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  194 (285)
T 1wdy_A          115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD  194 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSC
T ss_pred             hCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccc
Confidence            99999999999999999877          77899999999999999999999997 99999999999999999999999


Q ss_pred             ----HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHH
Q 013643          356 ----SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI-KGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIK  430 (439)
Q Consensus       356 ----~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~-~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik  430 (439)
                          .+++++|+++|++++.++..|+||||+|+..|+.+++++|++ +|++++.+|..|.|||++|+..|+.    ++++
T Consensus       195 ~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~----~i~~  270 (285)
T 1wdy_A          195 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK----KIAE  270 (285)
T ss_dssp             TTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCH----HHHH
T ss_pred             cchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcH----HHHH
Confidence                999999999999999999999999999999999999999999 8999999999999999999999995    9999


Q ss_pred             HHhcCCCC
Q 013643          431 LLKQLPTS  438 (439)
Q Consensus       431 ~L~~~~~~  438 (439)
                      +|++.+.+
T Consensus       271 ~Ll~~Ga~  278 (285)
T 1wdy_A          271 LLCKRGAS  278 (285)
T ss_dssp             HHHHHSSC
T ss_pred             HHHHcCCC
Confidence            99987653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=313.97  Aligned_cols=220  Identities=21%  Similarity=0.237  Sum_probs=181.8

Q ss_pred             CCCCCCcHHHHHHhcCcHHHHHHHHhCCCCC--------CCCCCCCCCCcCC-------hHHHHHHHhhcCCCcccCCCC
Q 013643          212 QRVPPKNPKWAVYGRGLDDVSEFFNSGNYDP--------PDKKSDGPRRKLF-------TKEEKVLLNKKLPHLATATSK  276 (439)
Q Consensus       212 ~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~--------n~~~~~~g~t~L~-------~~~~~~lL~~~~~d~~~~d~~  276 (439)
                      .+..+.++|+.|+..|+.++|++|++.|++.        +..+ ..|.|||+       ...+..+|+..|++++..|..
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~-~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~   85 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAAD-PEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD   85 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------CCCCTTCCCTT
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccC-ccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence            3455678999999999999999999998763        4444 67889988       234678889999999999999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH
Q 013643          277 KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASS  356 (439)
Q Consensus       277 g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~  356 (439)
                      |+||||+||..|+.+++++|++.|++++..+..|.||+++|+..++.+++++|++.|++++.+|..|.||||+|+..|+.
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~  165 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH  165 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643          357 PAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       357 ~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~  435 (439)
                      ++|++|+++|+++|.++..|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|+++|+   +.+++++|.+.
T Consensus       166 ~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~---i~~lL~~l~~~  241 (269)
T 4b93_B          166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK---IMELLQVVPSC  241 (269)
T ss_dssp             GGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH---HHHHTTC----
T ss_pred             HHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc---HHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999987765   24555555443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=8.3e-39  Score=299.65  Aligned_cols=223  Identities=23%  Similarity=0.191  Sum_probs=206.1

Q ss_pred             CCCCCCCcHHHHHHhcCcHHHHHHHHh----CCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchH
Q 013643          211 TQRVPPKNPKWAVYGRGLDDVSEFFNS----GNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLP  280 (439)
Q Consensus       211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~----~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tp  280 (439)
                      ..+..|.||||.|+..|+.+++++|++    .|++++..+ ..|.|||+      +.+++++|++.|++++..+..|+||
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN-NLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccc-ccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            356689999999999999999999997    899999998 89999999      7899999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCC----CCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCCHHHHHHHcCC
Q 013643          281 LHSLAASGEFYFVDALLKHNV----DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQTAS  355 (439)
Q Consensus       281 Lh~Aa~~g~~eivk~LL~~ga----din~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d-~~g~TpLh~A~~~g~  355 (439)
                      ||+|+..|+.+++++|+++++    +++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence            999999999999999999987    888999999999999999999999999999999999988 789999999999999


Q ss_pred             HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643          356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~  435 (439)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..|+.    +|++.|.+.
T Consensus       163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~----~i~~~l~~~  238 (241)
T 1k1a_A          163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI----DILRGKATR  238 (241)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHH----HHHTC----
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcH----HHHhhhccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999985    999999887


Q ss_pred             CCC
Q 013643          436 PTS  438 (439)
Q Consensus       436 ~~~  438 (439)
                      +.|
T Consensus       239 ~aS  241 (241)
T 1k1a_A          239 PAS  241 (241)
T ss_dssp             ---
T ss_pred             CCC
Confidence            754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3e-37  Score=299.26  Aligned_cols=217  Identities=21%  Similarity=0.187  Sum_probs=205.9

Q ss_pred             CCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHH
Q 013643          210 CTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHS  283 (439)
Q Consensus       210 ~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~  283 (439)
                      ...+..|+||||.|+..|+.+++++|++.|++++..+ ..|.|||+      +.+++++|++.+++++..+..|+||||+
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~  131 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIIT-ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN  131 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEEC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHH
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            4677889999999999999999999999999999998 89999999      7889999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Q 013643          284 LAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL  363 (439)
Q Consensus       284 Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll  363 (439)
                      |+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++|++|+
T Consensus       132 A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  210 (285)
T 3d9h_A          132 ACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL  210 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            99999999999999999999865 45999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643          364 LYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       364 ~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~  435 (439)
                      +.|++++. +..|+||||+|+..|+.+++++|+++|+|++.+|..|+|||++|+.  +.    +++++|++.
T Consensus       211 ~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~----~~~~~Ll~~  275 (285)
T 3d9h_A          211 ESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ES----PLAQLFLER  275 (285)
T ss_dssp             HTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TS----HHHHHHHHH
T ss_pred             HCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC--cc----HHHHHHHHh
Confidence            99999995 8899999999999999999999999999999999999999999993  33    788888875

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.4e-37  Score=297.80  Aligned_cols=211  Identities=19%  Similarity=0.148  Sum_probs=185.1

Q ss_pred             CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCC---CCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHH
Q 013643          211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYD---PPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPL  281 (439)
Q Consensus       211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~---~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpL  281 (439)
                      ..+..|+||||.|+..|+.+++++|++.|++   ++..+ ..|+||||      +.+++++|++.|++++..+..|+|||
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL   82 (282)
T 1oy3_D            4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQN-DLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (282)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            4567899999999999999999999999998   77888 89999999      78899999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCC-----------------------------------------------CcccCCCCChHH
Q 013643          282 HSLAASGEFYFVDALLKHNVD-----------------------------------------------INAVDKDGLTAL  314 (439)
Q Consensus       282 h~Aa~~g~~eivk~LL~~gad-----------------------------------------------in~~d~~g~t~L  314 (439)
                      |+|+..|+.+++++|+++|++                                               ++..+..|.|||
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  162 (282)
T 1oy3_D           83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (282)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence            999999999999999998765                                               667788999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCccCCC-CCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHH
Q 013643          315 HKAIIGKKQAVTNYLLRESANPFVVDED-GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVK  393 (439)
Q Consensus       315 ~~Aa~~g~~~iv~~LL~~ga~v~~~d~~-g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~  393 (439)
                      |+|+..|+.+++++|+++|++++.++.. |.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus       163 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~  242 (282)
T 1oy3_D          163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR  242 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHH
Confidence            9999999999999999999999998854 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHcCCc
Q 013643          394 LLLIKGADKTLKNRDGLTPLDLCLYSGRD  422 (439)
Q Consensus       394 ~LL~~Gadi~~~d~~G~TpL~~A~~~g~~  422 (439)
                      +|+++||+++.+|..|.|||++|......
T Consensus       243 ~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          243 LLRAHGAPEPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             HHHHTTCCCCCCC----------------
T ss_pred             HHHHcCCCcCcCCCcccccccccCCcccc
Confidence            99999999999999999999999987764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.5e-37  Score=289.74  Aligned_cols=217  Identities=27%  Similarity=0.312  Sum_probs=205.6

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHhCCCC-CCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHc
Q 013643          215 PPKNPKWAVYGRGLDDVSEFFNSGNYD-PPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAAS  287 (439)
Q Consensus       215 ~g~t~l~~A~~~g~~eiv~~Ll~~ga~-~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~  287 (439)
                      .+.++|+.|+..|+.+++++|++.+.. ++..+ ..|.|||+      +.+++++|++.+++++..+..|+||||+|+..
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRTD-QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcCC-CCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence            467899999999999999999987654 55666 89999999      78899999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q 013643          288 GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNV  367 (439)
Q Consensus       288 g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~ga  367 (439)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus        84 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  163 (231)
T 3aji_A           84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA  163 (231)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643          368 DINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       368 din~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~  436 (439)
                      +++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..++.    +++++|++.+
T Consensus       164 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~----~i~~lL~~~~  228 (231)
T 3aji_A          164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGL----ILKRLAEGEE  228 (231)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHH----HHHHHHHHHH
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHH----HHHHHHcccc
Confidence            9999999999999999999999999999999999999999999999999988885    8999988754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-36  Score=310.38  Aligned_cols=225  Identities=25%  Similarity=0.246  Sum_probs=184.1

Q ss_pred             cCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCc
Q 013643          205 SSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKW  278 (439)
Q Consensus       205 ~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~  278 (439)
                      .+......+..|.|||+.|+..|+.+++++|++.|++++..+ ..|.|||+      ..++.++|++.+++++..+..|.
T Consensus       168 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~  246 (437)
T 1n11_A          168 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA-WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV  246 (437)
T ss_dssp             TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            333334555677888888888888888888888888887777 77888887      66778888888888888888888


Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH
Q 013643          279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPA  358 (439)
Q Consensus       279 tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~i  358 (439)
                      ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++
T Consensus       247 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~  326 (437)
T 1n11_A          247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKL  326 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHH
T ss_pred             CHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhc
Q 013643          359 IKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ  434 (439)
Q Consensus       359 V~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~  434 (439)
                      |++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|...|+.    +++++|..
T Consensus       327 v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~----~~~~~l~~  398 (437)
T 1n11_A          327 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI----SVTDVLKV  398 (437)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCH----HHHHHHHH
T ss_pred             HHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcH----HHHHHHHh
Confidence            8888888888888888888888888888888888888888888888888888888888888884    66666654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.7e-36  Score=308.47  Aligned_cols=232  Identities=23%  Similarity=0.276  Sum_probs=219.4

Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCC
Q 013643          202 FVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATS  275 (439)
Q Consensus       202 ~l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~  275 (439)
                      ++.........+..|.||||.|+..|+.+++++|++.|++++..+ ..|.|||+      +.+++++|+..+.+++..+.
T Consensus       132 Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  210 (437)
T 1n11_A          132 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG-KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW  210 (437)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-SSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCT
T ss_pred             HHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCC
Confidence            344444445566789999999999999999999999999999998 89999999      77999999999999999999


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643          276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS  355 (439)
Q Consensus       276 ~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~  355 (439)
                      .|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus       211 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  290 (437)
T 1n11_A          211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH  290 (437)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643          356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~  435 (439)
                      .+++++|+++|++++.++..|+||||+|+..|+.++|++|+++|+|++.+|..|.||||+|+..|+.    +++++|++.
T Consensus       291 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~----~iv~~Ll~~  366 (437)
T 1n11_A          291 VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT----DIVTLLLKN  366 (437)
T ss_dssp             HHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHT
T ss_pred             HHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChH----HHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999999999999995    999999987


Q ss_pred             CCC
Q 013643          436 PTS  438 (439)
Q Consensus       436 ~~~  438 (439)
                      +.+
T Consensus       367 ga~  369 (437)
T 1n11_A          367 GAS  369 (437)
T ss_dssp             TCC
T ss_pred             cCC
Confidence            653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.4e-37  Score=310.60  Aligned_cols=219  Identities=16%  Similarity=0.119  Sum_probs=206.8

Q ss_pred             CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHH
Q 013643          211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSL  284 (439)
Q Consensus       211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~A  284 (439)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.|||+      +.+++++|++.+++++.  ..|+||||+|
T Consensus        15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A   91 (364)
T 3ljn_A           15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQN-RFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLA   91 (364)
T ss_dssp             -CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHH
Confidence            456678999999999999999999999999999999 89999999      78999999999996654  5789999999


Q ss_pred             HHcCCHHHHHHHHhC----CCCCcc-----------------cCCCCChHHHHHHHcC--CHHHHHHHHHCCCCCCccCC
Q 013643          285 AASGEFYFVDALLKH----NVDINA-----------------VDKDGLTALHKAIIGK--KQAVTNYLLRESANPFVVDE  341 (439)
Q Consensus       285 a~~g~~eivk~LL~~----gadin~-----------------~d~~g~t~L~~Aa~~g--~~~iv~~LL~~ga~v~~~d~  341 (439)
                      +..|+.+++++|+++    |++++.                 .+..|.||||+|+..|  +.++|++|+++|++++.+|.
T Consensus        92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~  171 (364)
T 3ljn_A           92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK  171 (364)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCT
T ss_pred             HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCC
Confidence            999999999999999    888877                 8889999999999999  99999999999999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCC-----CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 013643          342 DGATLLHYAVQTASSPAIKILLLYNVD-----INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLC  416 (439)
Q Consensus       342 ~g~TpLh~A~~~g~~~iV~~Ll~~gad-----in~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A  416 (439)
                      .|.||||+|+..|+.++|++|+++|++     ++..|..|+||||+|+..|+.++|++|+++|+|++.+|..|.|||++|
T Consensus       172 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A  251 (364)
T 3ljn_A          172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS  251 (364)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            999999999999999999999999998     999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCcchHHHHHHHHhcCC
Q 013643          417 LYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       417 ~~~g~~~~~~eiik~L~~~~  436 (439)
                      +..|+.    +++++|++.+
T Consensus       252 ~~~g~~----~~v~~Ll~~~  267 (364)
T 3ljn_A          252 VRAAMV----LLTKELLQKT  267 (364)
T ss_dssp             HHTCCH----HHHHHHHHHS
T ss_pred             HHhChH----HHHHHHHHcC
Confidence            999995    9999998764

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.5e-37  Score=311.16  Aligned_cols=220  Identities=22%  Similarity=0.249  Sum_probs=207.9

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHH--------hCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCch
Q 013643          214 VPPKNPKWAVYGRGLDDVSEFFN--------SGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWL  279 (439)
Q Consensus       214 ~~g~t~l~~A~~~g~~eiv~~Ll--------~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~t  279 (439)
                      ..|+||||+|+..|+.+++++|+        +.|+++|..+ ..|.||||      +.+++++|++.|++++..+..|+|
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t  201 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD-CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS  201 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCC
Confidence            57999999999999998888776        8999999999 89999999      788999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCC---CCCcccCCCCChHHHHHHHcC---CHHHHHHHHHCCCCCCc--------cCCCCCC
Q 013643          280 PLHSLAASGEFYFVDALLKHN---VDINAVDKDGLTALHKAIIGK---KQAVTNYLLRESANPFV--------VDEDGAT  345 (439)
Q Consensus       280 pLh~Aa~~g~~eivk~LL~~g---adin~~d~~g~t~L~~Aa~~g---~~~iv~~LL~~ga~v~~--------~d~~g~T  345 (439)
                      |||+|+..|+.+++++|++++   ++++..+..|.||||+|+..+   +.+++++|+++|++++.        .+..|.|
T Consensus       202 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t  281 (373)
T 2fo1_E          202 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT  281 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred             HHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCC
Confidence            999999999999999999998   899999999999999999998   89999999999999886        5678999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCC-CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcch
Q 013643          346 LLHYAVQTASSPAIKILLLYN-VDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTR  424 (439)
Q Consensus       346 pLh~A~~~g~~~iV~~Ll~~g-adin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~  424 (439)
                      |||+|+..|+.++|++|++.| ++++.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|.|||++|+..|+.  
T Consensus       282 ~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~--  359 (373)
T 2fo1_E          282 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH--  359 (373)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCH--
T ss_pred             HHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCH--
Confidence            999999999999999999875 99999999999999999999999999999999999999999999999999999995  


Q ss_pred             HHHHHHHHhcCCCC
Q 013643          425 TFGMIKLLKQLPTS  438 (439)
Q Consensus       425 ~~eiik~L~~~~~~  438 (439)
                        +|+++|+++...
T Consensus       360 --~iv~~Ll~~~a~  371 (373)
T 2fo1_E          360 --NIVDIFDRCRPE  371 (373)
T ss_dssp             --HHHHHHHTTC--
T ss_pred             --HHHHHHHhcCcc
Confidence              999999998765

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=8.6e-37  Score=283.82  Aligned_cols=212  Identities=24%  Similarity=0.297  Sum_probs=198.4

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHhCCCCCCC-CCCCCCCCcCC------hHHHHHHHhhcC--CCccc-CCCCCchHHHHHH
Q 013643          216 PKNPKWAVYGRGLDDVSEFFNSGNYDPPD-KKSDGPRRKLF------TKEEKVLLNKKL--PHLAT-ATSKKWLPLHSLA  285 (439)
Q Consensus       216 g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~-~~~~~g~t~L~------~~~~~~lL~~~~--~d~~~-~d~~g~tpLh~Aa  285 (439)
                      |.||||.|+..|+.+++++|++.|.++.. .+ ..|.|||+      +.+++++|++.+  .+++. .+..|+||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCC-CCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            68999999999999999999999988776 55 89999999      788999999999  66666 7889999999999


Q ss_pred             HcCCHHHHHHHHhCC--CCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Q 013643          286 ASGEFYFVDALLKHN--VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL  363 (439)
Q Consensus       286 ~~g~~eivk~LL~~g--adin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll  363 (439)
                      ..|+.+++++|+++|  ++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999999  899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCC-CCCccCCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643          364 LYN-VDINLQDNDGWTPLHLAVQARRTDIVKLLL-IKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       364 ~~g-adin~~d~~G~TpLh~A~~~g~~eiv~~LL-~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~  435 (439)
                      +.| ++++.+|..|+||||+|+..|+.+++++|+ ++|+|++.+|..|.|||++|+..       +++++|+++
T Consensus       161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~-------~~~~~l~~~  227 (228)
T 2dzn_A          161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE-------QVKKFFLNN  227 (228)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST-------THHHHHHTT
T ss_pred             hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH-------HHHHHHHhc
Confidence            999 999999999999999999999999999999 89999999999999999999643       467888764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.4e-36  Score=295.08  Aligned_cols=217  Identities=25%  Similarity=0.269  Sum_probs=202.0

Q ss_pred             CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHH
Q 013643          211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSL  284 (439)
Q Consensus       211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~A  284 (439)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||      +.+++++|++.+++++..+..|+||||+|
T Consensus        53 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A  131 (351)
T 3utm_A           53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKD-KGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA  131 (351)
T ss_dssp             CSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            455678999999999999999999999999999999 89999999      78999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCcccC------------------------------------------------------CCC
Q 013643          285 AASGEFYFVDALLKHNVDINAVD------------------------------------------------------KDG  310 (439)
Q Consensus       285 a~~g~~eivk~LL~~gadin~~d------------------------------------------------------~~g  310 (439)
                      +..|+.+++++|+++|++++..+                                                      ..|
T Consensus       132 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  211 (351)
T 3utm_A          132 ASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH  211 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTC
T ss_pred             HHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCC
Confidence            99999999999999999987644                                                      456


Q ss_pred             ChHHHHHHHc---CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcC
Q 013643          311 LTALHKAIIG---KKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQAR  387 (439)
Q Consensus       311 ~t~L~~Aa~~---g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g  387 (439)
                      .||||+|+..   +..+++++|+++|++++.++..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|
T Consensus       212 ~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~  291 (351)
T 3utm_A          212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG  291 (351)
T ss_dssp             CCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            7999999998   5589999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643          388 RTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       388 ~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~  436 (439)
                      +.++|++|+++|+|++.+|..|.||+++|    +    .+++++|.+..
T Consensus       292 ~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~----~~~~~~l~~~~  332 (351)
T 3utm_A          292 HLQTCRLLLSYGSDPSIISLQGFTAAQMG----N----EAVQQILSEST  332 (351)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHS----C----HHHHHHHHHC-
T ss_pred             cHHHHHHHHHcCCCCCCcCCCCCChhhhh----h----HHHHHHHHhcc
Confidence            99999999999999999999999999998    3    37888887654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.1e-36  Score=282.34  Aligned_cols=203  Identities=20%  Similarity=0.224  Sum_probs=185.7

Q ss_pred             hcCCCCCCC-CCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHH
Q 013643          204 NSSSSTCTQ-RVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLH  282 (439)
Q Consensus       204 ~~~~~~~~~-~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh  282 (439)
                      ..+...... +..|.||||.|+..|+.+++++|++.|++++..+                            ..|+||||
T Consensus        12 ~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------------------~~g~t~L~   63 (223)
T 2f8y_A           12 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD----------------------------NMGRTPLH   63 (223)
T ss_dssp             ETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------------------TTSCCHHH
T ss_pred             HcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcC----------------------------CCCCCHHH
Confidence            344443332 5778899999999999999999998887776544                            56779999


Q ss_pred             HHHHcCCHHHHHHHHhCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Q 013643          283 SLAASGEFYFVDALLKHNV-DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKI  361 (439)
Q Consensus       283 ~Aa~~g~~eivk~LL~~ga-din~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~  361 (439)
                      +|+..|+.+++++|+++++ +++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus        64 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  143 (223)
T 2f8y_A           64 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV  143 (223)
T ss_dssp             HHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            9999999999999999987 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643          362 LLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       362 Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                      |+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.    +|+++|++++..
T Consensus       144 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~----~i~~~L~~~g~~  216 (223)
T 2f8y_A          144 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH----DIVRLLDEYNLV  216 (223)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHHTTCS
T ss_pred             HHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcch----HHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999995    999999998754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.7e-36  Score=285.49  Aligned_cols=216  Identities=24%  Similarity=0.255  Sum_probs=207.5

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcC
Q 013643          215 PPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAASG  288 (439)
Q Consensus       215 ~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g  288 (439)
                      .|.|+|+.|+..|+.+++++|++.|++++......|.|||+      ..+++++|++.+++++..+..|.||||+|+..|
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            46799999999999999999999999999884488999999      789999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcc----------CCCCCCHHHHHHHcCCHHH
Q 013643          289 EFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV----------DEDGATLLHYAVQTASSPA  358 (439)
Q Consensus       289 ~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~----------d~~g~TpLh~A~~~g~~~i  358 (439)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.++
T Consensus        84 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T 1wdy_A           84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHH
Confidence            999999999999999999999999999999999999999999999999877          7789999999999999999


Q ss_pred             HHHHHhC-CCCCccCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHh
Q 013643          359 IKILLLY-NVDINLQDNDGWTPLHLAVQARR----TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK  433 (439)
Q Consensus       359 V~~Ll~~-gadin~~d~~G~TpLh~A~~~g~----~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~  433 (439)
                      +++|++. |++++..+..|+||||+|+..++    .+++++|+++|++++.+|..|.||||+|+..|+.    +++++|+
T Consensus       164 v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll  239 (285)
T 1wdy_A          164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL----GLVQRLL  239 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH----HHHHHHH
T ss_pred             HHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH----HHHHHHH
Confidence            9999998 99999999999999999999999    9999999999999999999999999999999995    9999999


Q ss_pred             c
Q 013643          434 Q  434 (439)
Q Consensus       434 ~  434 (439)
                      +
T Consensus       240 ~  240 (285)
T 1wdy_A          240 E  240 (285)
T ss_dssp             H
T ss_pred             h
Confidence            8

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.4e-36  Score=280.66  Aligned_cols=223  Identities=23%  Similarity=0.250  Sum_probs=208.7

Q ss_pred             CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCC-CCchHHHH
Q 013643          211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATS-KKWLPLHS  283 (439)
Q Consensus       211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~-~g~tpLh~  283 (439)
                      ..+..+.++|+.|+..|+.+++++|++.|++++..+ ..|.|||+      +.+++++|++.+.+++.... .|+||||+
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~   82 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPD-KENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW   82 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCC-CCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence            345567899999999999999999999999999998 89999999      78999999999999886654 49999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC-HHHHHHH
Q 013643          284 LAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS-SPAIKIL  362 (439)
Q Consensus       284 Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~-~~iV~~L  362 (439)
                      |+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++ .+++++|
T Consensus        83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L  162 (240)
T 3eu9_A           83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL  162 (240)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999997776 8999999


Q ss_pred             HhCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643          363 LLYNVDINLQDN-DGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       363 l~~gadin~~d~-~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                      ++.|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.    +++++|++....
T Consensus       163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~----~~v~~L~~~~~~  235 (240)
T 3eu9_A          163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNV----WMINHLQEARQA  235 (240)
T ss_dssp             HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCH----HHHHHHHHHC--
T ss_pred             HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcH----HHHHHHHHhhhc
Confidence            999999999987 999999999999999999999999999999999999999999999995    999999987654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.1e-35  Score=293.01  Aligned_cols=219  Identities=23%  Similarity=0.286  Sum_probs=205.1

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHc
Q 013643          215 PPKNPKWAVYGRGLDDVSEFFNSG-NYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAAS  287 (439)
Q Consensus       215 ~g~t~l~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~  287 (439)
                      .+.++|+.|+..|+.++++.|+.. +++++..+ ..|.||||      +.+++++|++.|++++..+..|+||||+|+..
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  101 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASD-GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY  101 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSS-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC
Confidence            456899999999999988888775 89999998 89999999      88999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC---------------------------
Q 013643          288 GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD---------------------------  340 (439)
Q Consensus       288 g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d---------------------------  340 (439)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+                           
T Consensus       102 g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~  181 (351)
T 3utm_A          102 GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS  181 (351)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccH
Confidence            99999999999999999999999999999999999999999999999987644                           


Q ss_pred             ---------------------------CCCCCHHHHHHHc---CCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHH
Q 013643          341 ---------------------------EDGATLLHYAVQT---ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTD  390 (439)
Q Consensus       341 ---------------------------~~g~TpLh~A~~~---g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~e  390 (439)
                                                 ..|.||||+|+..   +..+++++|++.|++++.++..|+||||+|+..|+.+
T Consensus       182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  261 (351)
T 3utm_A          182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND  261 (351)
T ss_dssp             HHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHH
Confidence                                       4577999999999   5589999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643          391 IVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       391 iv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                      ++++|+++|+|++.+|..|+||||+|+..|+.    +++++|++.+.+
T Consensus       262 ~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~----~~v~~Ll~~gad  305 (351)
T 3utm_A          262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHL----QTCRLLLSYGSD  305 (351)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH----HHHHHHHHTTCC
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH----HHHHHHHHcCCC
Confidence            99999999999999999999999999999995    999999997653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.5e-35  Score=288.83  Aligned_cols=219  Identities=22%  Similarity=0.208  Sum_probs=156.4

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHc
Q 013643          214 VPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAAS  287 (439)
Q Consensus       214 ~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~  287 (439)
                      ..|+||||+|+..|+.+++++|+++|++++..+ ..+.++++      .......+...+.+++..+..|+||||+|+..
T Consensus        57 ~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~  135 (337)
T 4g8k_A           57 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRK-KNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY  135 (337)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHT
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhc-cCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHc
Confidence            358999999999999999999999999998877 67777766      44555666667777777777777777777777


Q ss_pred             CCHHHHHHHHhCCCCCccc----------CCCCChHHHHHHHcCCHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCC-
Q 013643          288 GEFYFVDALLKHNVDINAV----------DKDGLTALHKAIIGKKQAVTNYLLR-ESANPFVVDEDGATLLHYAVQTAS-  355 (439)
Q Consensus       288 g~~eivk~LL~~gadin~~----------d~~g~t~L~~Aa~~g~~~iv~~LL~-~ga~v~~~d~~g~TpLh~A~~~g~-  355 (439)
                      |+.+++++|+++|++++..          +..|.||||+|+..|+.++|++|++ .|++++.++..|.|+|+.++..+. 
T Consensus       136 ~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~  215 (337)
T 4g8k_A          136 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD  215 (337)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT
T ss_pred             CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc
Confidence            7777777777777766543          3346677777777777777777774 477777777777777766655433 


Q ss_pred             ---HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHH
Q 013643          356 ---SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI-KGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKL  431 (439)
Q Consensus       356 ---~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~-~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~  431 (439)
                         ..++++|+++|+++|.++..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.    +|+++
T Consensus       216 ~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~----~iv~~  291 (337)
T 4g8k_A          216 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK----KIAEL  291 (337)
T ss_dssp             TTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCH----HHHHH
T ss_pred             ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCH----HHHHH
Confidence               346666677777777777777777777777777777777665 3667777777777777777777764    66666


Q ss_pred             HhcCCC
Q 013643          432 LKQLPT  437 (439)
Q Consensus       432 L~~~~~  437 (439)
                      |++.+.
T Consensus       292 Ll~~GA  297 (337)
T 4g8k_A          292 LCKRGA  297 (337)
T ss_dssp             HHTTSC
T ss_pred             HHHCCC
Confidence            666543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.7e-36  Score=290.51  Aligned_cols=209  Identities=20%  Similarity=0.259  Sum_probs=193.8

Q ss_pred             CCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHH
Q 013643          212 QRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLA  285 (439)
Q Consensus       212 ~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa  285 (439)
                      ....+.|+|+.|+..|+.+++++|++.|++++..+ ..|.||||      +.+++++|++.|++++..+..|+||||+|+
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYAN-VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA  114 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBC-TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            34467799999999999999999999999999998 89999999      788999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCC--------------------------c
Q 013643          286 ASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLR-ESANPF--------------------------V  338 (439)
Q Consensus       286 ~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~-~ga~v~--------------------------~  338 (439)
                      ..|+.+++++|+++|++++..+..|.||||+|+..++.+++++++. .+.+++                          .
T Consensus       115 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  194 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (299)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhh
Confidence            9999999999999999999999999999999999999999987775 344432                          3


Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 013643          339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLY  418 (439)
Q Consensus       339 ~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~  418 (439)
                      .+..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+.
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             cCC
Q 013643          419 SGR  421 (439)
Q Consensus       419 ~g~  421 (439)
                      ...
T Consensus       275 ~~~  277 (299)
T 1s70_B          275 DIL  277 (299)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.5e-34  Score=269.92  Aligned_cols=190  Identities=22%  Similarity=0.198  Sum_probs=175.8

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHH
Q 013643          215 PPKNPKWAVYGRGLDDVSEFFNSG-NYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFV  293 (439)
Q Consensus       215 ~g~t~l~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eiv  293 (439)
                      .|.||||.|+..|+.+++++|++. |++++..+                            ..|+||||+|+..|+.+++
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~----------------------------~~g~t~L~~A~~~g~~~~v   53 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRG----------------------------AMGETALHIAALYDNLEAA   53 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCC----------------------------TTSCCHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCC----------------------------CCCCCHHHHHHHcCCHHHH
Confidence            478999999999999999999987 77776554                            5678999999999999999


Q ss_pred             HHHHhCCCCC-----cccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCC-------------CCCCHHHHHHHcCC
Q 013643          294 DALLKHNVDI-----NAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDE-------------DGATLLHYAVQTAS  355 (439)
Q Consensus       294 k~LL~~gadi-----n~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~-------------~g~TpLh~A~~~g~  355 (439)
                      ++|+++|+++     +..+..|.||||+|+..|+.+++++|+++|++++.++.             .|.||||+|+..|+
T Consensus        54 ~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  133 (232)
T 2rfa_A           54 MVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS  133 (232)
T ss_dssp             HHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTC
T ss_pred             HHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCC
Confidence            9999999887     66778999999999999999999999999999998765             79999999999999


Q ss_pred             HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCC------CCCCCCCCCHHHHHHHcCCcchH
Q 013643          356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV----KLLLIKGADK------TLKNRDGLTPLDLCLYSGRDTRT  425 (439)
Q Consensus       356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv----~~LL~~Gadi------~~~d~~G~TpL~~A~~~g~~~~~  425 (439)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++    ++|+++|+++      +.+|..|.|||++|+..|+.   
T Consensus       134 ~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~---  210 (232)
T 2rfa_A          134 EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI---  210 (232)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCH---
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCH---
Confidence            9999999999999999999999999999999999988    9999999998      58999999999999999995   


Q ss_pred             HHHHHHHhcCC
Q 013643          426 FGMIKLLKQLP  436 (439)
Q Consensus       426 ~eiik~L~~~~  436 (439)
                       +++++|++.+
T Consensus       211 -~~v~~Ll~~g  220 (232)
T 2rfa_A          211 -VMFQHLMQKR  220 (232)
T ss_dssp             -HHHHHHHHHH
T ss_pred             -HHHHHHHhcC
Confidence             9999998753

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=280.82  Aligned_cols=219  Identities=21%  Similarity=0.172  Sum_probs=179.3

Q ss_pred             CCCCCCcHHHHHHhcCcHHHHHHHHhCC-----------CCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCC
Q 013643          212 QRVPPKNPKWAVYGRGLDDVSEFFNSGN-----------YDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATAT  274 (439)
Q Consensus       212 ~~~~g~t~l~~A~~~g~~eiv~~Ll~~g-----------a~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d  274 (439)
                      -...|.|++|.|+..|+.+.+..++..+           ...+..+ ..|+||||      ..+++++|++.+++++..+
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~   89 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDA-VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIIT   89 (285)
T ss_dssp             -------------------------------CCSEECCCCTTCSSS-CCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEEC
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCC-ccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            3456889999999999966555544332           2244555 89999999      7889999999999999999


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC
Q 013643          275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTA  354 (439)
Q Consensus       275 ~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g  354 (439)
                      ..|+||||+||..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|
T Consensus        90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g  168 (285)
T 3d9h_A           90 ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRG  168 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHHHHHT
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999854 45999999999999


Q ss_pred             CHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhc
Q 013643          355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ  434 (439)
Q Consensus       355 ~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~  434 (439)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. +..|.||||+|+..|+.    +++++|++
T Consensus       169 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~----~~v~~Ll~  243 (285)
T 3d9h_A          169 HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASE----ELACLLMD  243 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCH----HHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCH----HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999995 88999999999999995    99999998


Q ss_pred             CCC
Q 013643          435 LPT  437 (439)
Q Consensus       435 ~~~  437 (439)
                      .+.
T Consensus       244 ~ga  246 (285)
T 3d9h_A          244 FGA  246 (285)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=9e-34  Score=258.56  Aligned_cols=191  Identities=22%  Similarity=0.251  Sum_probs=178.2

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHhCCC-CCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHH
Q 013643          214 VPPKNPKWAVYGRGLDDVSEFFNSGNY-DPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYF  292 (439)
Q Consensus       214 ~~g~t~l~~A~~~g~~eiv~~Ll~~ga-~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~ei  292 (439)
                      ..+.|+|+.|+..|+.++++.|+..+. +++.                            .+..|+||||+|+..|+.++
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~----------------------------~~~~g~t~L~~A~~~~~~~~   54 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDE----------------------------VDTEGNTPLNIAVHNNDIEI   54 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTC----------------------------CCTTSCCHHHHHHHHTCHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCC----------------------------CCCCCCCHHHHHHHcCCHHH
Confidence            457899999999999999999998654 4444                            34568899999999999999


Q ss_pred             HHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHH-HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCc
Q 013643          293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLL-RESANPFVVDEDGATLLHYAVQTASSPAIKILLLYN-VDIN  370 (439)
Q Consensus       293 vk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL-~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~g-adin  370 (439)
                      +++|+++|++++..+..|.||||+|+..|+.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|+++| ++++
T Consensus        55 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  134 (201)
T 3hra_A           55 AKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID  134 (201)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC
Confidence            99999999999999999999999999999999999999 567899999999999999999999999999999999 9999


Q ss_pred             cCCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643          371 LQDNDGWTPLHLAVQARR-----TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       371 ~~d~~G~TpLh~A~~~g~-----~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~  436 (439)
                      .++..|+||||+|+..++     .+++++|+++|+|++.+|..|.|||++|+..|+.    +++++|++++
T Consensus       135 ~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~----~~~~~Ll~~G  201 (201)
T 3hra_A          135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT----EISKILAQYN  201 (201)
T ss_dssp             CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH----HHHHHHHTCC
T ss_pred             CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH----hHHHHHHhcC
Confidence            999999999999999998     9999999999999999999999999999999995    9999999864

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.8e-34  Score=257.00  Aligned_cols=156  Identities=36%  Similarity=0.510  Sum_probs=150.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH
Q 013643          279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPA  358 (439)
Q Consensus       279 tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~i  358 (439)
                      ++|+.||..|+.++|++|+++|+++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643          359 IKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       359 V~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                      |++|+++|+++|.+|..|+||||+|++.|+.++|++|+++|+|++.+|..|+|||++|+..|+.    +|+++|++.+.+
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~----~iv~~Ll~~GA~  161 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNE----EVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHTC---
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH----HHHHHHHHCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999995    999999998753

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.5e-34  Score=275.16  Aligned_cols=191  Identities=27%  Similarity=0.278  Sum_probs=179.4

Q ss_pred             CCCCCCCCCCcCC------hHHHHHHHhhcCCC---cccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChH
Q 013643          243 PDKKSDGPRRKLF------TKEEKVLLNKKLPH---LATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTA  313 (439)
Q Consensus       243 n~~~~~~g~t~L~------~~~~~~lL~~~~~d---~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~  313 (439)
                      +..+ ..|+||||      ..+++++|++.+++   ++..+..|+||||+||..|+.+++++|+++|++++..+..|+||
T Consensus         3 ~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            3 GYVT-EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCC-TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CccC-CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            4556 89999999      78899999998888   88899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCC-----------------------------------------------CCccCCCCCCH
Q 013643          314 LHKAIIGKKQAVTNYLLRESAN-----------------------------------------------PFVVDEDGATL  346 (439)
Q Consensus       314 L~~Aa~~g~~~iv~~LL~~ga~-----------------------------------------------v~~~d~~g~Tp  346 (439)
                      ||+|+..|+.+++++|+++|++                                               ++.++..|.||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence            9999999999999999998765                                               67788899999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCccCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchH
Q 013643          347 LHYAVQTASSPAIKILLLYNVDINLQDND-GWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRT  425 (439)
Q Consensus       347 Lh~A~~~g~~~iV~~Ll~~gadin~~d~~-G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~  425 (439)
                      ||+|+..|+.++|++|+++|++++..+.. |+||||+|+..|+.++|++|+++|+|++.+|..|.||||+|+..|+.   
T Consensus       162 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~---  238 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP---  238 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCH---
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCc---
Confidence            99999999999999999999999999854 99999999999999999999999999999999999999999999995   


Q ss_pred             HHHHHHHhcCCCC
Q 013643          426 FGMIKLLKQLPTS  438 (439)
Q Consensus       426 ~eiik~L~~~~~~  438 (439)
                       +|+++|++++.+
T Consensus       239 -~~v~~Ll~~ga~  250 (282)
T 1oy3_D          239 -ILARLLRAHGAP  250 (282)
T ss_dssp             -HHHHHHHHTTCC
T ss_pred             -HHHHHHHHcCCC
Confidence             999999987653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=7.1e-35  Score=282.65  Aligned_cols=221  Identities=14%  Similarity=0.128  Sum_probs=198.8

Q ss_pred             hHHHhhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCccc
Q 013643          199 FQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLAT  272 (439)
Q Consensus       199 ~~~~l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~  272 (439)
                      +.+++.+. .....+..|.||||+|+..|+.+++++|++.|++++..   .|.||||      +.+++++|++.|++++.
T Consensus        15 v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   90 (285)
T 3kea_A           15 LKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDSQ   90 (285)
T ss_dssp             HHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCTTC
T ss_pred             HHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            44555554 34567788999999999999999999999999999876   4899999      77899999999999999


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCC-ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH
Q 013643          273 ATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDG-LTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAV  351 (439)
Q Consensus       273 ~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g-~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~  351 (439)
                      .+..|+||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++|+++... ..|.||||+|+
T Consensus        91 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~  169 (285)
T 3kea_A           91 FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITI  169 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHH
Confidence            99999999999999999999999999999999999999 79999999999999999999999877322 28999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCccCCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHH
Q 013643          352 QTASSPAIKILLLYNVDINLQDNDGWTP-LHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIK  430 (439)
Q Consensus       352 ~~g~~~iV~~Ll~~gadin~~d~~G~Tp-Lh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik  430 (439)
                      ..|+.++|++|+++|++++.++..|+|| ||+|+..|+.+++++|+++|+|++.+|.       .|+..|+.    ++++
T Consensus       170 ~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~----~iv~  238 (285)
T 3kea_A          170 KNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDA----EIAK  238 (285)
T ss_dssp             HTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCH----HHHH
T ss_pred             HcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCH----HHHH
Confidence            9999999999999999999999999998 9999999999999999999999999884       55678885    8999


Q ss_pred             HHhcC
Q 013643          431 LLKQL  435 (439)
Q Consensus       431 ~L~~~  435 (439)
                      +|++.
T Consensus       239 ~Ll~~  243 (285)
T 3kea_A          239 MIIEK  243 (285)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            99874

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2e-33  Score=260.47  Aligned_cols=175  Identities=22%  Similarity=0.201  Sum_probs=160.3

Q ss_pred             HHhhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCC-CCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCch
Q 013643          201 DFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNY-DPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWL  279 (439)
Q Consensus       201 ~~l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga-~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~t  279 (439)
                      .++..+......+..|.||||.|+..|+.+++++|++.+. +++.                            .+..|+|
T Consensus        43 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----------------------------~~~~g~t   94 (223)
T 2f8y_A           43 RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA----------------------------RMHDGTT   94 (223)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTC----------------------------CCTTCCC
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc----------------------------CCCCCCc
Confidence            3344555556677889999999999999999999999875 4443                            3456789


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH
Q 013643          280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAI  359 (439)
Q Consensus       280 pLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV  359 (439)
                      |||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++
T Consensus        95 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  174 (223)
T 2f8y_A           95 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA  174 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 013643          360 KILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKT  403 (439)
Q Consensus       360 ~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~  403 (439)
                      ++|+++|++++.++..|+|||++|+..|+.+++++|+++|+...
T Consensus       175 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          175 KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             HHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            99999999999999999999999999999999999999998754

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.3e-33  Score=253.56  Aligned_cols=159  Identities=30%  Similarity=0.372  Sum_probs=147.5

Q ss_pred             cHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHHH
Q 013643          218 NPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALL  297 (439)
Q Consensus       218 t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL  297 (439)
                      +.|+.|+..|+.++|++|++.|+++|..+                            ..|+||||+|+..++.+++++|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d----------------------------~~g~t~l~~a~~~~~~~~~~~ll   57 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASD----------------------------SDGRTPLHHAAENGHKEVVKLLI   57 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------------------TTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcC----------------------------CCCCCHHHHHHHcCCHHHHHHHH
Confidence            46899999999999999999998888665                            45778999999999999999999


Q ss_pred             hCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCC
Q 013643          298 KHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGW  377 (439)
Q Consensus       298 ~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~  377 (439)
                      ++|++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+
T Consensus        58 ~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~  137 (169)
T 4gpm_A           58 SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGR  137 (169)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             hcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 013643          378 TPLHLAVQARRTDIVKLLLIKGADKTL  404 (439)
Q Consensus       378 TpLh~A~~~g~~eiv~~LL~~Gadi~~  404 (439)
                      ||||+|++.|+.+++++|+++|||++-
T Consensus       138 TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          138 TPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTC------
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            999999999999999999999999864

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=5.3e-35  Score=274.22  Aligned_cols=198  Identities=24%  Similarity=0.202  Sum_probs=165.5

Q ss_pred             CCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHH
Q 013643          212 QRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFY  291 (439)
Q Consensus       212 ~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~e  291 (439)
                      .+..|.||||.|+..|+.+++++|++.+...                        +.+++..+..|+||||+|+..|+.+
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~------------------------~~~~~~~~~~g~t~L~~A~~~~~~~   59 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGD------------------------LAFLNFQNNLQQTPLHLAVITNQPE   59 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----------------------------CCCCCCCCTTCCCHHHHHHHTTCHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhcc------------------------HHHhhccCCCCCCHHHHHHHcCCHH
Confidence            4567899999999999999999998776421                        2345556677888999999999999


Q ss_pred             HHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHhC
Q 013643          292 FVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN------PFVVDEDGATLLHYAVQTASSPAIKILLLY  365 (439)
Q Consensus       292 ivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~------v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~  365 (439)
                      ++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++      ++..+..|.||||+|+..|+.++|++|+++
T Consensus        60 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  139 (236)
T 1ikn_D           60 IAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL  139 (236)
T ss_dssp             HHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999988888899999999999999999999988875      456677889999999999999999999999


Q ss_pred             CCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643          366 NVDINLQDN-DGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       366 gadin~~d~-~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~  437 (439)
                      |++++.++. .|+||||+|+..|+.++|++|+++|+|++.+|..|.|||++|+..|+.    +++++|++.+.
T Consensus       140 g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~----~~~~~Ll~~ga  208 (236)
T 1ikn_D          140 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST----RIQQQLGQLTL  208 (236)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCH----HHHHHHHTTSC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCch----HHHHHHHHcch
Confidence            999998887 899999999999999999999999999999999999999999998885    88888888765

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=7.9e-35  Score=290.75  Aligned_cols=217  Identities=17%  Similarity=0.118  Sum_probs=198.4

Q ss_pred             hhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhc----CCCccc
Q 013643          203 VNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKK----LPHLAT  272 (439)
Q Consensus       203 l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~----~~d~~~  272 (439)
                      +..+......+..|.||||+|+..|+.+++++|++.|++++.   ..|.|||+      +.+++++|++.    +.+++.
T Consensus        40 l~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  116 (364)
T 3ljn_A           40 IETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL---WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPES  116 (364)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC---BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc---cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHH
Confidence            334444456677899999999999999999999999996654   47899999      78899999988    888877


Q ss_pred             -----------------CCCCCchHHHHHHHcC--CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC
Q 013643          273 -----------------ATSKKWLPLHSLAASG--EFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRES  333 (439)
Q Consensus       273 -----------------~d~~g~tpLh~Aa~~g--~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~g  333 (439)
                                       .+..|+||||+|+..|  +.+++++|+++|++++..|..|.||||+|+..|+.++|++|+++|
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g  196 (364)
T 3ljn_A          117 LLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTV  196 (364)
T ss_dssp             HHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                             8889999999999999  999999999999999999999999999999999999999999999


Q ss_pred             CC-----CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC----
Q 013643          334 AN-----PFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL----  404 (439)
Q Consensus       334 a~-----v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~----  404 (439)
                      ++     ++.++..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.    
T Consensus       197 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  276 (364)
T 3ljn_A          197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP  276 (364)
T ss_dssp             SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCT
T ss_pred             cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCc
Confidence            98     999999999999999999999999999999999999999999999999999999999999999887532    


Q ss_pred             --------CCCCCCCHHHHHHHcCCc
Q 013643          405 --------KNRDGLTPLDLCLYSGRD  422 (439)
Q Consensus       405 --------~d~~G~TpL~~A~~~g~~  422 (439)
                              .+..|+||+++|+..|+.
T Consensus       277 ~~~~~~~~~~~~~~~~l~~aa~~~~~  302 (364)
T 3ljn_A          277 YHNGTTVLPDRVVWLDFVPAAADPSK  302 (364)
T ss_dssp             TBSSSSBCGGGCCCCTTSCSSCCHHH
T ss_pred             ccCcccccccccccccchhhhhccCH
Confidence                    566789999999999976

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.6e-34  Score=287.34  Aligned_cols=220  Identities=20%  Similarity=0.200  Sum_probs=196.2

Q ss_pred             CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------h--------HHHHHHHhhcCCCcccCCCC
Q 013643          211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------T--------KEEKVLLNKKLPHLATATSK  276 (439)
Q Consensus       211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~--------~~~~~lL~~~~~d~~~~d~~  276 (439)
                      ..+..|.|+||.|+.++. +++++|+.  .+++..+...|+||||      .        ....+.|++.|++++..|..
T Consensus        89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~  165 (373)
T 2fo1_E           89 EPEPESPIKLHTEAAGSY-AITEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD  165 (373)
T ss_dssp             -----CCCHHHHHHHSSS-CCCSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTT
T ss_pred             CCCCCCccHHHHHhcCCc-hHHHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCC
Confidence            345678999999999776 78888865  5677776568999999      1        22344556899999999999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC---CCCCccCCCCCCHHHHHHHc
Q 013643          277 KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRES---ANPFVVDEDGATLLHYAVQT  353 (439)
Q Consensus       277 g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~g---a~v~~~d~~g~TpLh~A~~~  353 (439)
                      |+||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++++   ++++..+..|.||||+|+..
T Consensus       166 g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~  245 (373)
T 2fo1_E          166 ENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN  245 (373)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHS
T ss_pred             CCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999998   89999999999999999999


Q ss_pred             C---CHHHHHHHHhCCCCCcc--------CCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCC
Q 013643          354 A---SSPAIKILLLYNVDINL--------QDNDGWTPLHLAVQARRTDIVKLLLIKG-ADKTLKNRDGLTPLDLCLYSGR  421 (439)
Q Consensus       354 g---~~~iV~~Ll~~gadin~--------~d~~G~TpLh~A~~~g~~eiv~~LL~~G-adi~~~d~~G~TpL~~A~~~g~  421 (439)
                      +   +.+++++|+++|++++.        .+..|+||||+|+..|+.++|++|+++| ++++.+|..|.||||+|+..|+
T Consensus       246 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~  325 (373)
T 2fo1_E          246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR  325 (373)
T ss_dssp             CSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCC
Confidence            8   89999999999999986        5779999999999999999999999876 9999999999999999999999


Q ss_pred             cchHHHHHHHHhcCCC
Q 013643          422 DTRTFGMIKLLKQLPT  437 (439)
Q Consensus       422 ~~~~~eiik~L~~~~~  437 (439)
                      .    +++++|++.+.
T Consensus       326 ~----~iv~~Ll~~ga  337 (373)
T 2fo1_E          326 I----EVVMYLIQQGA  337 (373)
T ss_dssp             H----HHHHHHHHTTC
T ss_pred             H----HHHHHHHHcCC
Confidence            5    99999998764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6.8e-33  Score=259.24  Aligned_cols=193  Identities=24%  Similarity=0.277  Sum_probs=185.1

Q ss_pred             CCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChH
Q 013643          240 YDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTA  313 (439)
Q Consensus       240 a~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~  313 (439)
                      .+++..+ ..|.|||+      ..+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus         2 ~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   80 (237)
T 3b7b_A            2 MNFKMEH-QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC   80 (237)
T ss_dssp             CCCCCSS-CCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH
T ss_pred             CCccccc-CCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Confidence            4567777 89999999      7889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q 013643          314 LHKAIIGKKQAVTNYLLRES-ANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV  392 (439)
Q Consensus       314 L~~Aa~~g~~~iv~~LL~~g-a~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv  392 (439)
                      ||+|+..|+.+++++|+++| .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~  160 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA  160 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHH
Confidence            99999999999999999998 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643          393 KLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       393 ~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~  437 (439)
                      ++|+++|++++.+|..|.||||+|+..|+.    +++++|++.+.
T Consensus       161 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~ga  201 (237)
T 3b7b_A          161 EILLAAKCDLHAVNIHGDSPLHIAARENRY----DCVVLFLSRDS  201 (237)
T ss_dssp             HHHHTTTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHTTTC
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHhCCH----hHHHHHHHcCC
Confidence            999999999999999999999999999995    99999998764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.1e-34  Score=273.42  Aligned_cols=193  Identities=23%  Similarity=0.240  Sum_probs=173.2

Q ss_pred             CCcHHHHHHhcCcHH----HHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHc---C
Q 013643          216 PKNPKWAVYGRGLDD----VSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAAS---G  288 (439)
Q Consensus       216 g~t~l~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~---g  288 (439)
                      |+||||.|+..|+.+    ++++|++.|++++...                        ...+..|+||||+|+..   |
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~------------------------~~~d~~g~t~L~~A~~~~~~g   57 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSA------------------------YTEGSTGKTCLMKAVLNLQDG   57 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG------------------------GSBTTTTBCHHHHHHHTCBTT
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCccccc------------------------ccCCCCCCCHHHHHHHccccc
Confidence            789999999999997    5667777777766511                        01356788999999999   9


Q ss_pred             CHHHHHHHHhCCCCCccc-----------CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCC-------------CC
Q 013643          289 EFYFVDALLKHNVDINAV-----------DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDED-------------GA  344 (439)
Q Consensus       289 ~~eivk~LL~~gadin~~-----------d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~-------------g~  344 (439)
                      +.+++++|+++|++++..           |..|.||||+|+..|+.+++++|+++|++++.++..             |.
T Consensus        58 ~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~  137 (256)
T 2etb_A           58 VNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGE  137 (256)
T ss_dssp             BCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCS
T ss_pred             hHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCC
Confidence            999999999999887643           367999999999999999999999999999999886             99


Q ss_pred             CHHHHHHHcCCHHHHHHHHh---CCCCCccCCCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCC-------CCC
Q 013643          345 TLLHYAVQTASSPAIKILLL---YNVDINLQDNDGWTPLHLAVQ--ARRTD-------IVKLLLIKGADK-------TLK  405 (439)
Q Consensus       345 TpLh~A~~~g~~~iV~~Ll~---~gadin~~d~~G~TpLh~A~~--~g~~e-------iv~~LL~~Gadi-------~~~  405 (439)
                      ||||+|+..|+.++|++|++   +|++++.+|..|+||||+|+.  .++.+       ++++|+++|+|+       +.+
T Consensus       138 tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~  217 (256)
T 2etb_A          138 LPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS  217 (256)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCC
T ss_pred             CHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccccc
Confidence            99999999999999999999   999999999999999999999  78888       999999999999       899


Q ss_pred             CCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643          406 NRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       406 d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~  436 (439)
                      |..|.||||+|+..|+.    +++++|++++
T Consensus       218 d~~g~tpL~~A~~~g~~----~~v~~Ll~~g  244 (256)
T 2etb_A          218 NHQGLTPLKLAAKEGKI----EIFRHILQRE  244 (256)
T ss_dssp             CTTSCCHHHHHHHTTCH----HHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhCCH----HHHHHHHhCC
Confidence            99999999999999995    9999998753

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.1e-33  Score=259.76  Aligned_cols=191  Identities=21%  Similarity=0.200  Sum_probs=184.5

Q ss_pred             CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHH
Q 013643          211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSL  284 (439)
Q Consensus       211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~A  284 (439)
                      ..+..|.||||.|+..|+.+++++|++.|++++..+ ..|.|||+      +.+++++|++.+++++..+..|+||||+|
T Consensus        35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  113 (231)
T 3aji_A           35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA  113 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcC-CCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            456679999999999999999999999999999998 89999999      77899999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh
Q 013643          285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLL  364 (439)
Q Consensus       285 a~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~  364 (439)
                      +..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++
T Consensus       114 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  193 (231)
T 3aji_A          114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT  193 (231)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 013643          365 YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK  402 (439)
Q Consensus       365 ~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi  402 (439)
                      +|++++.+|..|+||||+|+..++.+++++|+++|+++
T Consensus       194 ~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          194 QGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM  231 (231)
T ss_dssp             TTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence            99999999999999999999999999999999998864

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=9.5e-33  Score=262.21  Aligned_cols=187  Identities=21%  Similarity=0.178  Sum_probs=179.2

Q ss_pred             CCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCC-CcccCCCCCchHHHHH
Q 013643          212 QRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLP-HLATATSKKWLPLHSL  284 (439)
Q Consensus       212 ~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~-d~~~~d~~g~tpLh~A  284 (439)
                      .+..|+||||+|+..|+.+++++|++.|++++..+ ..|.|||+      ..+++++|++.+. +++..+..|+||||+|
T Consensus        53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  131 (253)
T 1yyh_A           53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA  131 (253)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHH
Confidence            36789999999999999999999999999999998 89999999      6788999999887 8999999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh
Q 013643          285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLL  364 (439)
Q Consensus       285 a~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~  364 (439)
                      +..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++
T Consensus       132 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  211 (253)
T 1yyh_A          132 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD  211 (253)
T ss_dssp             HHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 013643          365 YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG  399 (439)
Q Consensus       365 ~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~G  399 (439)
                      +|++++.+|..|+|||++|++.|+.+|+++|....
T Consensus       212 ~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          212 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             cCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.9e-32  Score=270.65  Aligned_cols=219  Identities=24%  Similarity=0.256  Sum_probs=203.0

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHH
Q 013643          213 RVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAA  286 (439)
Q Consensus       213 ~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~  286 (439)
                      ...|.|+|+.|+..|+.++|++|++.|+++|..+...|+||||      +.+++++|+++|++++..+..+.++++.++.
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~  101 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI  101 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence            3457899999999999999999999999999887567999999      7899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcc----------CCCCCCHHHHHHHcCCH
Q 013643          287 SGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV----------DEDGATLLHYAVQTASS  356 (439)
Q Consensus       287 ~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~----------d~~g~TpLh~A~~~g~~  356 (439)
                      .+...++..+++.+++++..|..|.||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~  181 (337)
T 4g8k_A          102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  181 (337)
T ss_dssp             HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred             cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence            99999999999999999999999999999999999999999999999988754          44689999999999999


Q ss_pred             HHHHHHHh-CCCCCccCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHH
Q 013643          357 PAIKILLL-YNVDINLQDNDGWTPLHLAVQARR----TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKL  431 (439)
Q Consensus       357 ~iV~~Ll~-~gadin~~d~~G~TpLh~A~~~g~----~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~  431 (439)
                      ++|++|++ .|++++.++..|+|++++++..+.    ..++++|+++|+|++.+|..|+||||+|+..|+.    +++++
T Consensus       182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~----~~v~~  257 (337)
T 4g8k_A          182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL----GLVQR  257 (337)
T ss_dssp             HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCH----HHHHH
T ss_pred             HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhh----HHHHH
Confidence            99999995 699999999999999998887654    4689999999999999999999999999999995    88888


Q ss_pred             HhcC
Q 013643          432 LKQL  435 (439)
Q Consensus       432 L~~~  435 (439)
                      |++.
T Consensus       258 Ll~~  261 (337)
T 4g8k_A          258 LLEQ  261 (337)
T ss_dssp             HHTS
T ss_pred             HHHh
Confidence            8864

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.5e-33  Score=273.36  Aligned_cols=203  Identities=16%  Similarity=0.111  Sum_probs=188.2

Q ss_pred             hcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHHHh
Q 013643          225 GRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLK  298 (439)
Q Consensus       225 ~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~  298 (439)
                      ..+..+++++|.+.  +++..+ ..|.||||      +.+++++|++.|++++..  +|+||||+|+..|+.+++++|++
T Consensus         9 ~~~~~~v~~lL~~~--~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~   83 (285)
T 3kea_A            9 TWKSKQLKSFLSSK--DTFKAD-VHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLF   83 (285)
T ss_dssp             GCCHHHHHHHHHST--TTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHH
T ss_pred             hcCHHHHHHHHHhC--CCCccC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHH
Confidence            34567888888876  577888 89999999      789999999999999887  48999999999999999999999


Q ss_pred             CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCC-CCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCC
Q 013643          299 HNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDG-ATLLHYAVQTASSPAIKILLLYNVDINLQDNDGW  377 (439)
Q Consensus       299 ~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g-~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~  377 (439)
                      +|++++..+..|+||||+|+..|+.+++++|+++|++++.++..| .||||+|+..|+.+++++|+++|+++... ..|+
T Consensus        84 ~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~  162 (285)
T 3kea_A           84 SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILL  162 (285)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHH
T ss_pred             CCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCc
Confidence            999999999999999999999999999999999999999999999 79999999999999999999999887433 2899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCcchHHHHHHHHhcCCC
Q 013643          378 TPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTP-LDLCLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       378 TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~Tp-L~~A~~~g~~~~~~eiik~L~~~~~  437 (439)
                      ||||+|+..|+.+++++|+++|+|++.+|..|+|| ||+|+..|+.    +++++|++.+.
T Consensus       163 t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~ga  219 (285)
T 3kea_A          163 SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDI  219 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCB
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCC
Confidence            99999999999999999999999999999999998 9999999995    99999998765

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.1e-32  Score=255.97  Aligned_cols=189  Identities=24%  Similarity=0.244  Sum_probs=176.6

Q ss_pred             CCCCCCCCCcCC------hHHHHHHHhh----cCCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChH
Q 013643          244 DKKSDGPRRKLF------TKEEKVLLNK----KLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTA  313 (439)
Q Consensus       244 ~~~~~~g~t~L~------~~~~~~lL~~----~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~  313 (439)
                      ..+ ..|.||||      +.++++.|++    .+.+++..+..|+||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus         4 ~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            4 RAD-EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ccC-CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            455 78999999      6666766665    899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCC----CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCC-CCCCcHHHHHHHcCC
Q 013643          314 LHKAIIGKKQAVTNYLLRESA----NPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD-NDGWTPLHLAVQARR  388 (439)
Q Consensus       314 L~~Aa~~g~~~iv~~LL~~ga----~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d-~~G~TpLh~A~~~g~  388 (439)
                      ||+|+..|+.+++++|++.++    +++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+..|+
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence            999999999999999999987    888899999999999999999999999999999999998 889999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643          389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       389 ~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~  437 (439)
                      .+++++|+++|+|++.+|..|.||||+|+..|+.    +++++|++.+.
T Consensus       163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~ga  207 (241)
T 1k1a_A          163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLL----PLVRTLVRSGA  207 (241)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCH----HHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH----HHHHHHHhcCC
Confidence            9999999999999999999999999999999995    99999998764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.7e-33  Score=268.60  Aligned_cols=200  Identities=25%  Similarity=0.234  Sum_probs=173.8

Q ss_pred             CCCCCCCCcHHHHHHhcCcHHHHHHHHhC----CCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHH
Q 013643          210 CTQRVPPKNPKWAVYGRGLDDVSEFFNSG----NYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLA  285 (439)
Q Consensus       210 ~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~----ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa  285 (439)
                      ...+..|.|+||.|+..|+.++++.|++.    +++++...                        ...+..|+||||+||
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~------------------------~~~~~~g~tpL~~A~   62 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSE------------------------FKDPETGKTCLLKAM   62 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGG------------------------GSCTTTCCCHHHHHH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcc------------------------cccCcCCCCHHHHHH
Confidence            35667899999999999999998888864    44333211                        024678999999999


Q ss_pred             Hc---CCHHHHHHHHhCCCCC-------cc----cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCC----------
Q 013643          286 AS---GEFYFVDALLKHNVDI-------NA----VDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDE----------  341 (439)
Q Consensus       286 ~~---g~~eivk~LL~~gadi-------n~----~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~----------  341 (439)
                      ..   |+.+++++|+++|+++       +.    .|..|.||||+|+..|+.++|++|+++|++++.++.          
T Consensus        63 ~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  142 (273)
T 2pnn_A           63 LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGR  142 (273)
T ss_dssp             HSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSS
T ss_pred             HHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccccccccc
Confidence            87   9999999999998653       22    566899999999999999999999999999999987          


Q ss_pred             ----CCCCHHHHHHHcCCHHHHHHHHh---CCCCCccCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCC--
Q 013643          342 ----DGATLLHYAVQTASSPAIKILLL---YNVDINLQDNDGWTPLHLAVQARR---------TDIVKLLLIKGADKT--  403 (439)
Q Consensus       342 ----~g~TpLh~A~~~g~~~iV~~Ll~---~gadin~~d~~G~TpLh~A~~~g~---------~eiv~~LL~~Gadi~--  403 (439)
                          .|.||||+|+..|+.++|++|++   +|++++.+|..|+||||+|+..|+         .+++++|+++|++++  
T Consensus       143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~  222 (273)
T 2pnn_A          143 PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT  222 (273)
T ss_dssp             CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccc
Confidence                79999999999999999999999   999999999999999999999998         899999999999997  


Q ss_pred             -----CCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643          404 -----LKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       404 -----~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~  437 (439)
                           .+|..|+||||+|+..|+.    +++++|++.+.
T Consensus       223 ~~~~~~~d~~g~TpL~~A~~~g~~----~iv~~Ll~~ga  257 (273)
T 2pnn_A          223 LKLEEITNRKGLTPLALAASSGKI----GVLAYILQREI  257 (273)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHTTCH----HHHHHHHHHHT
T ss_pred             cccccccCCCCCCHHHHHHHhChH----HHHHHHHHCCC
Confidence                 4899999999999999995    99999988654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=8.5e-33  Score=262.71  Aligned_cols=195  Identities=26%  Similarity=0.252  Sum_probs=172.1

Q ss_pred             CCCCcHHHHHHhcCcHHH----HHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHH---H
Q 013643          214 VPPKNPKWAVYGRGLDDV----SEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLA---A  286 (439)
Q Consensus       214 ~~g~t~l~~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa---~  286 (439)
                      ..++++|+.|+..|+.++    +++|++.|++++..+                        ...+..|+||||+|+   .
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~------------------------~~~~~~g~t~L~~A~~~~~   58 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE------------------------FREPSTGKTCLPKALLNLS   58 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG------------------------GSCTTTCCCHHHHHHTSCB
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh------------------------hhccCCCCcHHHHHHHHhh
Confidence            457899999999999995    555555777776543                        113467899999999   6


Q ss_pred             cCCHHHHHHHHhCCCC-----------CcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC--------------C
Q 013643          287 SGEFYFVDALLKHNVD-----------INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD--------------E  341 (439)
Q Consensus       287 ~g~~eivk~LL~~gad-----------in~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d--------------~  341 (439)
                      .|+.+++++|++.|++           ++..|..|+||||+||..|+.++|++|+++|++++.++              .
T Consensus        59 ~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  138 (260)
T 3jxi_A           59 AGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFY  138 (260)
T ss_dssp             TTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCC
T ss_pred             cCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCccccccccc
Confidence            7999999999998754           34455589999999999999999999999999999998              6


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHh---CCCCCccCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCC-------
Q 013643          342 DGATLLHYAVQTASSPAIKILLL---YNVDINLQDNDGWTPLHLAVQARR---------TDIVKLLLIKGADK-------  402 (439)
Q Consensus       342 ~g~TpLh~A~~~g~~~iV~~Ll~---~gadin~~d~~G~TpLh~A~~~g~---------~eiv~~LL~~Gadi-------  402 (439)
                      .|.||||+|+..|+.++|++|++   +|++++.+|..|+||||+|+..|+         .+++++|+++|+++       
T Consensus       139 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~  218 (260)
T 3jxi_A          139 FGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLE  218 (260)
T ss_dssp             SCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchh
Confidence            89999999999999999999999   999999999999999999999888         79999999999999       


Q ss_pred             CCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643          403 TLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       403 ~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~  436 (439)
                      +.+|..|+||||+|+..|+.    +++++|++.+
T Consensus       219 ~~~d~~g~tpL~~A~~~g~~----~~v~~Ll~~g  248 (260)
T 3jxi_A          219 ALLNNDGLSPLMMAAKTGKI----GIFQHIIRRE  248 (260)
T ss_dssp             GCCCTTSCCHHHHHHHTTCH----HHHHHHHHHH
T ss_pred             hcccCCCCCHHHHHHHcCCH----HHHHHHHHhC
Confidence            67999999999999999995    9999998753

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=8e-32  Score=250.22  Aligned_cols=183  Identities=22%  Similarity=0.239  Sum_probs=169.7

Q ss_pred             CCCcCC------hHHHHHHHhhcCCCccc-CCCCCchHHHHHHHcCCHHHHHHHHhCC--CCCcc-cCCCCChHHHHHHH
Q 013643          250 PRRKLF------TKEEKVLLNKKLPHLAT-ATSKKWLPLHSLAASGEFYFVDALLKHN--VDINA-VDKDGLTALHKAII  319 (439)
Q Consensus       250 g~t~L~------~~~~~~lL~~~~~d~~~-~d~~g~tpLh~Aa~~g~~eivk~LL~~g--adin~-~d~~g~t~L~~Aa~  319 (439)
                      |.|||+      ..++++.|++.+.+... .+..|+||||+|+..|+.+++++|+++|  ++++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            678888      67788888888877654 8899999999999999999999999999  55655 77899999999999


Q ss_pred             cCCHHHHHHHHHCC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 013643          320 GKKQAVTNYLLRES--ANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI  397 (439)
Q Consensus       320 ~g~~~iv~~LL~~g--a~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~  397 (439)
                      .|+.+++++|+++|  ++++..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999998  8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHh-cCC
Q 013643          398 KG-ADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK-QLP  436 (439)
Q Consensus       398 ~G-adi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~-~~~  436 (439)
                      +| ++++.+|..|.||||+|+..|+.    +++++|+ +.+
T Consensus       162 ~g~~~~~~~d~~g~t~L~~A~~~~~~----~~v~~Ll~~~g  198 (228)
T 2dzn_A          162 LGKSAVNWQDKQGWTPLFHALAEGHG----DAAVLLVEKYG  198 (228)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCH----HHHHHHHHHHC
T ss_pred             cCcccccCcCCCCCCHHHHHHHcCCH----HHHHHHHHhcC
Confidence            99 99999999999999999999995    9999998 544

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.98  E-value=5e-32  Score=246.13  Aligned_cols=163  Identities=27%  Similarity=0.292  Sum_probs=157.4

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHH
Q 013643          270 LATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHY  349 (439)
Q Consensus       270 ~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~  349 (439)
                      ++..|..|+||||+||..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHH
Q 013643          350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMI  429 (439)
Q Consensus       350 A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eii  429 (439)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.    +++
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~----~~v  183 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ----EVI  183 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH----HHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcH----HHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999995    999


Q ss_pred             HHHhcCC
Q 013643          430 KLLKQLP  436 (439)
Q Consensus       430 k~L~~~~  436 (439)
                      ++|++..
T Consensus       184 ~~Ll~~~  190 (192)
T 2rfm_A          184 KIFTEVR  190 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            9998753

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=2.5e-33  Score=277.17  Aligned_cols=211  Identities=24%  Similarity=0.200  Sum_probs=168.3

Q ss_pred             cCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCC-------------CCCCCc---CC------hHHHHHH
Q 013643          205 SSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKS-------------DGPRRK---LF------TKEEKVL  262 (439)
Q Consensus       205 ~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~-------------~~g~t~---L~------~~~~~~l  262 (439)
                      .+......+..|.++++     |+.+++++|++.|++++....             ..+.+.   ++      ..++.++
T Consensus        41 ~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  115 (327)
T 1sw6_A           41 SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA  115 (327)
T ss_dssp             SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHH
T ss_pred             CCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHH
Confidence            33334445556777765     788999999999988765210             011121   12      5567788


Q ss_pred             HhhcCCCccc-CCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCC---HHHHHHHHHCC-CCCC
Q 013643          263 LNKKLPHLAT-ATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKK---QAVTNYLLRES-ANPF  337 (439)
Q Consensus       263 L~~~~~d~~~-~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~---~~iv~~LL~~g-a~v~  337 (439)
                      |...+++++. .+..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+   .++++.|++.+ ++++
T Consensus       116 l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~  195 (327)
T 1sw6_A          116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI  195 (327)
T ss_dssp             CTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG
T ss_pred             HHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc
Confidence            8889999999 89999999999999999999999999999999999999999999999988   67778888775 6788


Q ss_pred             ccCCCCCCHHHHHHH----cCCHHHHHHHHhCCC---------------------------------------------C
Q 013643          338 VVDEDGATLLHYAVQ----TASSPAIKILLLYNV---------------------------------------------D  368 (439)
Q Consensus       338 ~~d~~g~TpLh~A~~----~g~~~iV~~Ll~~ga---------------------------------------------d  368 (439)
                      .++..|.||||+|+.    .|+.+++++|++.++                                             +
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~  275 (327)
T 1sw6_A          196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  275 (327)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhC
Confidence            899999999999998    899999999987632                                             5


Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 013643          369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG  420 (439)
Q Consensus       369 in~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g  420 (439)
                      +|.+|..|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|+..|
T Consensus       276 ~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            7888889999999999999999999999999999999999999999998765

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.98  E-value=1.9e-31  Score=237.80  Aligned_cols=159  Identities=31%  Similarity=0.419  Sum_probs=152.2

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Q 013643          274 TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQT  353 (439)
Q Consensus       274 d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~  353 (439)
                      ...+.++|+.||..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHh
Q 013643          354 ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK  433 (439)
Q Consensus       354 g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~  433 (439)
                      |+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..|+.    +|+++|+
T Consensus        91 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~----~~~~~L~  166 (169)
T 2y1l_E           91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE----DLAEILQ  166 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCH----HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999995    9999999


Q ss_pred             cCC
Q 013643          434 QLP  436 (439)
Q Consensus       434 ~~~  436 (439)
                      +++
T Consensus       167 ~~G  169 (169)
T 2y1l_E          167 KLN  169 (169)
T ss_dssp             TC-
T ss_pred             HcC
Confidence            864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=6.1e-31  Score=244.98  Aligned_cols=204  Identities=19%  Similarity=0.142  Sum_probs=185.2

Q ss_pred             HHhhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCC
Q 013643          201 DFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATAT  274 (439)
Q Consensus       201 ~~l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d  274 (439)
                      .++..+......+..|.|||+.|+..|+.+++++|++.|++++......|.|||+      ..+++++|++.+++++..+
T Consensus        27 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  106 (240)
T 3eu9_A           27 ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLID  106 (240)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence            3444454555667789999999999999999999999999999777566999999      7889999999999999999


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCC-HHHHHHHHHCCCCCCccCC-CCCCHHHHHHH
Q 013643          275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKK-QAVTNYLLRESANPFVVDE-DGATLLHYAVQ  352 (439)
Q Consensus       275 ~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~-~~iv~~LL~~ga~v~~~d~-~g~TpLh~A~~  352 (439)
                      ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ .+++++|++.|++++..+. .|.||||+|+.
T Consensus       107 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~  186 (240)
T 3eu9_A          107 GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL  186 (240)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHH
Confidence            999999999999999999999999999999999999999999997666 8999999999999999887 89999999999


Q ss_pred             cCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 013643          353 TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL  404 (439)
Q Consensus       353 ~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~  404 (439)
                      .|+.+++++|+++|++++.++..|+|||++|++.|+.+++++|+++|++...
T Consensus       187 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~  238 (240)
T 3eu9_A          187 AGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY  238 (240)
T ss_dssp             HTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence            9999999999999999999999999999999999999999999999987654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=3.8e-31  Score=234.72  Aligned_cols=155  Identities=30%  Similarity=0.464  Sum_probs=150.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643          276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS  355 (439)
Q Consensus       276 ~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~  355 (439)
                      .|.||||.||..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhc
Q 013643          356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ  434 (439)
Q Consensus       356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~  434 (439)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..|+.    +++++|++
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~----~~~~~L~~  156 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR----SVQQVIES  156 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH----HHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcH----HHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999996    77777765

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=4e-31  Score=255.84  Aligned_cols=212  Identities=22%  Similarity=0.256  Sum_probs=184.1

Q ss_pred             HHHhcCcHHHHHHHHhCCCCCCCCC--------CCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHc
Q 013643          222 AVYGRGLDDVSEFFNSGNYDPPDKK--------SDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAAS  287 (439)
Q Consensus       222 ~A~~~g~~eiv~~Ll~~ga~~n~~~--------~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~  287 (439)
                      .++..+..+.++.++....++....        ...|.|+|+      +.+++++|++.|++++..+..|+||||+||..
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   83 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID   83 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            3455556666666666555544321        023445666      77889999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-C
Q 013643          288 GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLY-N  366 (439)
Q Consensus       288 g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~-g  366 (439)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+.. |
T Consensus        84 g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~  163 (299)
T 1s70_B           84 DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG  163 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999877753 5


Q ss_pred             CCCc--------------------------cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 013643          367 VDIN--------------------------LQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG  420 (439)
Q Consensus       367 adin--------------------------~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g  420 (439)
                      ++++                          ..+..|.||||+|+..|+.++|++|+++|+|++.+|..|.||||+|+..|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~  243 (299)
T 1s70_B          164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG  243 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcC
Confidence            5443                          35678999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHhcCCC
Q 013643          421 RDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       421 ~~~~~~eiik~L~~~~~  437 (439)
                      +.    +++++|++.+.
T Consensus       244 ~~----~~v~~Ll~~ga  256 (299)
T 1s70_B          244 KE----EACRILVENLC  256 (299)
T ss_dssp             CH----HHHHHHHHTTC
T ss_pred             CH----HHHHHHHHcCC
Confidence            95    99999998764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=4.6e-31  Score=232.50  Aligned_cols=158  Identities=30%  Similarity=0.415  Sum_probs=150.8

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643          276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS  355 (439)
Q Consensus       276 ~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~  355 (439)
                      ...||||.|+..|+.+++++|+++|++++..+..|+||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            35689999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhc
Q 013643          356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD-KTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ  434 (439)
Q Consensus       356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gad-i~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~  434 (439)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.|||++|+..|+.    +++++|++
T Consensus        83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~----~~~~~Ll~  158 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN----EVVSLMQA  158 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCH----HHHHHHHH
Confidence            9999999999999999999999999999999999999999999998 699999999999999999995    99999999


Q ss_pred             CCCC
Q 013643          435 LPTS  438 (439)
Q Consensus       435 ~~~~  438 (439)
                      .+.+
T Consensus       159 ~GAd  162 (162)
T 1ihb_A          159 NGAG  162 (162)
T ss_dssp             TC--
T ss_pred             hCCC
Confidence            8753

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=3.3e-32  Score=262.19  Aligned_cols=192  Identities=19%  Similarity=0.176  Sum_probs=149.9

Q ss_pred             CCCCCCCcHHHHHHhcCcH-HHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHH
Q 013643          211 TQRVPPKNPKWAVYGRGLD-DVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHS  283 (439)
Q Consensus       211 ~~~~~g~t~l~~A~~~g~~-eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~  283 (439)
                      ..+..+.|||+.|+..+.. .++++|++.|+++|..+ ..|+||||      +.+++++|+..+++++..+..|.||+|+
T Consensus        47 ~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d-~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~  125 (269)
T 4b93_B           47 AADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTS-QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHL  125 (269)
T ss_dssp             ----------------------------CCCCTTCCC-TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             ccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcccc
Confidence            4456688999988876654 58999999999999999 89999999      6788999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Q 013643          284 LAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL  363 (439)
Q Consensus       284 Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll  363 (439)
                      |+..++.+++++|+++|++++.+|..|+||||+||..|+.++|++|+++|++++.++..|.||||+|+..|+.++|++|+
T Consensus       126 a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll  205 (269)
T 4b93_B          126 ACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLL  205 (269)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             ccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCccCCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCC
Q 013643          364 LYNVDINLQDNDGWTPLHLAVQARR-TDIVKLLLIKGADKT  403 (439)
Q Consensus       364 ~~gadin~~d~~G~TpLh~A~~~g~-~eiv~~LL~~Gadi~  403 (439)
                      ++|+|++.+|..|+||||+|+++++ .+++++|...+++++
T Consensus       206 ~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~  246 (269)
T 4b93_B          206 LHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD  246 (269)
T ss_dssp             HTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred             HCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence            9999999999999999999998876 456666666665543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.1e-30  Score=228.69  Aligned_cols=151  Identities=25%  Similarity=0.278  Sum_probs=146.0

Q ss_pred             chHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH
Q 013643          278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSP  357 (439)
Q Consensus       278 ~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~  357 (439)
                      .++|+.|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            589999999999999999999999887 5888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHh
Q 013643          358 AIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK  433 (439)
Q Consensus       358 iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~  433 (439)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.    +++++|+
T Consensus        82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~----~i~~~L~  153 (153)
T 1awc_B           82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE----DLAEILQ  153 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHC
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH----HHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999995    8999874

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=2e-30  Score=241.88  Aligned_cols=162  Identities=24%  Similarity=0.247  Sum_probs=153.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC-----CccCCCCCCHHHH
Q 013643          276 KKWLPLHSLAASGEFYFVDALLKH-NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP-----FVVDEDGATLLHY  349 (439)
Q Consensus       276 ~g~tpLh~Aa~~g~~eivk~LL~~-gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v-----~~~d~~g~TpLh~  349 (439)
                      .|+||||+||..|+.+++++|++. |++++..|..|+||||+|+..|+.+++++|+++|+++     +.++..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            478999999999999999999998 9999999999999999999999999999999999886     6677899999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCccCCC-------------CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 013643          350 AVQTASSPAIKILLLYNVDINLQDN-------------DGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLC  416 (439)
Q Consensus       350 A~~~g~~~iV~~Ll~~gadin~~d~-------------~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A  416 (439)
                      |+..|+.+++++|+++|++++..+.             .|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A  161 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL  161 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999998866             799999999999999999999999999999999999999999


Q ss_pred             HHcCCcchHHHHHHHHhcCCC
Q 013643          417 LYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       417 ~~~g~~~~~~eiik~L~~~~~  437 (439)
                      +..|+.+.+.+++++|++.+.
T Consensus       162 ~~~~~~~~~~~i~~~Ll~~g~  182 (232)
T 2rfa_A          162 ILQPNKTFACQMYNLLLSYDG  182 (232)
T ss_dssp             HTCSCHHHHHHHHHHHHHTTC
T ss_pred             HHcCChHHHHHHHHHHHhcCC
Confidence            999998777778899998765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=6.2e-31  Score=253.84  Aligned_cols=165  Identities=26%  Similarity=0.334  Sum_probs=156.9

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhCCC-CCcccCCCCChHHHHHH-----HcCCHHHHHHHHHCCCCCCccCCCC
Q 013643          270 LATATSKKWLPLHSLAASGEFYFVDALLKHNV-DINAVDKDGLTALHKAI-----IGKKQAVTNYLLRESANPFVVDEDG  343 (439)
Q Consensus       270 ~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~ga-din~~d~~g~t~L~~Aa-----~~g~~~iv~~LL~~ga~v~~~d~~g  343 (439)
                      ++..|..|+||||+||..|+.+++++|++.|+ +++..+..|.||||+|+     ..++.+++++|++.|..++..+..|
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g  183 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG  183 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence            55677889999999999999999999999998 99999999999999999     6688999999999999999999999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCc
Q 013643          344 ATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI-KGADKTLKNRDGLTPLDLCLYSGRD  422 (439)
Q Consensus       344 ~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~-~Gadi~~~d~~G~TpL~~A~~~g~~  422 (439)
                      .||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+..|+.++|++|++ +|+|++.+|..|.|||++|+..|+.
T Consensus       184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~  263 (276)
T 4hbd_A          184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQS  263 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCH
Confidence            999999999999999999999999999999999999999999999999999999 8999999999999999999999995


Q ss_pred             chHHHHHHHHhcCCCC
Q 013643          423 TRTFGMIKLLKQLPTS  438 (439)
Q Consensus       423 ~~~~eiik~L~~~~~~  438 (439)
                          +++++|++...-
T Consensus       264 ----~iv~~Ll~~~~i  275 (276)
T 4hbd_A          264 ----EIASMLYSRMNI  275 (276)
T ss_dssp             ----HHHHHHHHHCCC
T ss_pred             ----HHHHHHHhccCC
Confidence                999999886543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.1e-30  Score=232.90  Aligned_cols=138  Identities=25%  Similarity=0.294  Sum_probs=77.8

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC
Q 013643          275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTA  354 (439)
Q Consensus       275 ~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g  354 (439)
                      ..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus        34 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  113 (172)
T 3v30_A           34 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN  113 (172)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            34555555666666666666666556555555555556666666666666666666555555555555566666666666


Q ss_pred             CHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Q 013643          355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTP  412 (439)
Q Consensus       355 ~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~Tp  412 (439)
                      +.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|+++...+..|.||
T Consensus       114 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             CHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            6666666665566655555556666666666666666666665555555555555544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2.4e-30  Score=230.68  Aligned_cols=155  Identities=30%  Similarity=0.421  Sum_probs=147.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643          277 KWLPLHSLAASGEFYFVDALLKHNVD-INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS  355 (439)
Q Consensus       277 g~tpLh~Aa~~g~~eivk~LL~~gad-in~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~  355 (439)
                      +.+|||.||..|+.+++++|++.+.+ ++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            35899999999999999999999987 88889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643          356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~  435 (439)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.    +++++|+++
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~----~~~~~L~~~  157 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR----KVQQVIENH  157 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH----HHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcH----HHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999996    888888764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=2.2e-30  Score=229.32  Aligned_cols=160  Identities=32%  Similarity=0.375  Sum_probs=149.0

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHh-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH
Q 013643          273 ATSKKWLPLHSLAASGEFYFVDALLK-HNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAV  351 (439)
Q Consensus       273 ~d~~g~tpLh~Aa~~g~~eivk~LL~-~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~  351 (439)
                      .+..+.++||.|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            35667899999999999999999998 46678888889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHH
Q 013643          352 QTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKL  431 (439)
Q Consensus       352 ~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~  431 (439)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+. |+.    +|+++
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~----~i~~~  158 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDT----DIQDL  158 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCH----HHHHH
T ss_pred             HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CCh----HHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999877 774    99999


Q ss_pred             HhcCCC
Q 013643          432 LKQLPT  437 (439)
Q Consensus       432 L~~~~~  437 (439)
                      |++.+.
T Consensus       159 L~~~gA  164 (165)
T 3twr_A          159 LRGDAA  164 (165)
T ss_dssp             HHTC--
T ss_pred             Hhhccc
Confidence            998763

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=5.9e-30  Score=225.38  Aligned_cols=157  Identities=19%  Similarity=0.196  Sum_probs=147.4

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHH
Q 013643          216 PKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDA  295 (439)
Q Consensus       216 g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~  295 (439)
                      ..|+|+.|+..|+.+++++|++.|++++..+                            ..|+||||+|+. |+.+++++
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~----------------------------~~g~t~L~~A~~-~~~~~v~~   55 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQN----------------------------GFGRTALQVMKL-GNPEIARR   55 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCC----------------------------TTSCCHHHHCCS-SCHHHHHH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccC----------------------------ccCccHHHHHHc-CcHHHHHH
Confidence            4589999999999999999999888776554                            467799999999 99999999


Q ss_pred             HHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CccCCC
Q 013643          296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD-INLQDN  374 (439)
Q Consensus       296 LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gad-in~~d~  374 (439)
                      |+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++ ++..+.
T Consensus        56 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  135 (162)
T 1ihb_A           56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH  135 (162)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998 699999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 013643          375 DGWTPLHLAVQARRTDIVKLLLIKGAD  401 (439)
Q Consensus       375 ~G~TpLh~A~~~g~~eiv~~LL~~Gad  401 (439)
                      .|+||||+|+..|+.+++++|+++|||
T Consensus       136 ~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          136 KGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999999999986

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.2e-30  Score=244.49  Aligned_cols=184  Identities=21%  Similarity=0.214  Sum_probs=165.7

Q ss_pred             CCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCC
Q 013643          210 CTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGE  289 (439)
Q Consensus       210 ~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~  289 (439)
                      ...+..|.||||.|+..|+.+++++|++.|++++..+                            ..|+||||+|+..|+
T Consensus        39 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------------------~~g~t~L~~A~~~~~   90 (236)
T 1ikn_D           39 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD----------------------------FRGNTPLHLACEQGC   90 (236)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCC----------------------------TTCCCHHHHHHHHTC
T ss_pred             hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC----------------------------CCCCCHHHHHHHcCC
Confidence            3455679999999999999999999999998877654                            457799999999999


Q ss_pred             HHHHHHHHhCCCC------CcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCC-CCCCHHHHHHHcCCHHHHHHH
Q 013643          290 FYFVDALLKHNVD------INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDE-DGATLLHYAVQTASSPAIKIL  362 (439)
Q Consensus       290 ~eivk~LL~~gad------in~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~-~g~TpLh~A~~~g~~~iV~~L  362 (439)
                      .+++++|+++|++      ++..+..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.++|++|
T Consensus        91 ~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L  170 (236)
T 1ikn_D           91 LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL  170 (236)
T ss_dssp             HHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999976      467788899999999999999999999999999999997 999999999999999999999


Q ss_pred             HhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCC
Q 013643          363 LLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKT--LKNRDGLTPLDLCLYSGR  421 (439)
Q Consensus       363 l~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~--~~d~~G~TpL~~A~~~g~  421 (439)
                      +++|++++.+|..|+||||+|+..|+.+++++|+++|++..  ..+..|.||++.+.....
T Consensus       171 l~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  231 (236)
T 1ikn_D          171 LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTE  231 (236)
T ss_dssp             HTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-----
T ss_pred             HHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccccc
Confidence            99999999999999999999999999999999999999876  788899999877665543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=1.6e-29  Score=225.30  Aligned_cols=160  Identities=26%  Similarity=0.366  Sum_probs=149.2

Q ss_pred             CCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHH
Q 013643          212 QRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFY  291 (439)
Q Consensus       212 ~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~e  291 (439)
                      ....+.++++.|+..|+.+++++|++.|++++..+                            ..|+||||+|+..|+.+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------------------~~g~t~L~~A~~~~~~~   61 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAED----------------------------ASGWTPLHLAAFNGHLE   61 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC----------------------------TTSCCHHHHHHHTTCHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCC----------------------------CCCCCHHHHHHHcCCHH
Confidence            33456789999999999999999999998887654                            45779999999999999


Q ss_pred             HHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcc
Q 013643          292 FVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINL  371 (439)
Q Consensus       292 ivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~  371 (439)
                      ++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.
T Consensus        62 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  141 (169)
T 2y1l_E           62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA  141 (169)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 013643          372 QDNDGWTPLHLAVQARRTDIVKLLLIKG  399 (439)
Q Consensus       372 ~d~~G~TpLh~A~~~g~~eiv~~LL~~G  399 (439)
                      +|..|+||||+|+..|+.+++++|+++|
T Consensus       142 ~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          142 QDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            9999999999999999999999999876

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=1.1e-29  Score=222.35  Aligned_cols=153  Identities=32%  Similarity=0.443  Sum_probs=147.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643          277 KWLPLHSLAASGEFYFVDALLKH-NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS  355 (439)
Q Consensus       277 g~tpLh~Aa~~g~~eivk~LL~~-gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~  355 (439)
                      +.|+||.||..|+.+++++|++. +.+++..+..|.||||+ |..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            45899999999999999999998 45899999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643          356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~  435 (439)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++.+|..|.|||++|+..|+.    +++++|+++
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~----~~v~~Ll~~  155 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQ----DLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCH----HHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcH----HHHHHHHhh
Confidence            9999999999999999999999999999999999999999999 99999999999999999999995    999999874

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=5.1e-30  Score=230.41  Aligned_cols=159  Identities=24%  Similarity=0.289  Sum_probs=148.6

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Q 013643          275 SKKWLPLHSLAASGEFYFVDALLKH-NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQT  353 (439)
Q Consensus       275 ~~g~tpLh~Aa~~g~~eivk~LL~~-gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~  353 (439)
                      ..+.++||.||..|+.+++++|++. +.+++..+..|+||||+||..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            3467899999999999999999998 678999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHh
Q 013643          354 ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK  433 (439)
Q Consensus       354 g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~  433 (439)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.    +++++|+
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~----~~~~~L~  158 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRE----LLRERAE  158 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHH----HHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHH----HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998885    9999999


Q ss_pred             cCCC
Q 013643          434 QLPT  437 (439)
Q Consensus       434 ~~~~  437 (439)
                      +.+.
T Consensus       159 ~~g~  162 (179)
T 3f6q_A          159 KMGQ  162 (179)
T ss_dssp             HTTC
T ss_pred             Hhhc
Confidence            8764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=1.3e-29  Score=224.79  Aligned_cols=161  Identities=19%  Similarity=0.165  Sum_probs=152.1

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHH
Q 013643          215 PPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVD  294 (439)
Q Consensus       215 ~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk  294 (439)
                      .|.||||.|+..|+.+++++|++.|++++..+                            ..|+||||+|+..|+.++++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~----------------------------~~g~t~L~~A~~~~~~~~v~   53 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTD----------------------------EEGFTPLMWAAAHGQIAVVE   53 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCC----------------------------TTSCCHHHHHHHTTCHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCC----------------------------CCCCCHHHHHHHCCCHHHHH
Confidence            47899999999999999999999887766554                            46779999999999999999


Q ss_pred             HHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCC
Q 013643          295 ALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDN  374 (439)
Q Consensus       295 ~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~  374 (439)
                      +|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++.
T Consensus        54 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  133 (167)
T 3v31_A           54 FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD  133 (167)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 013643          375 DGWTPLHLAVQARRTDIVKLLLIKGADKT  403 (439)
Q Consensus       375 ~G~TpLh~A~~~g~~eiv~~LL~~Gadi~  403 (439)
                      .|+||||+|+..|+.+++++|+++++++.
T Consensus       134 ~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          134 SGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999877643

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.2e-29  Score=230.36  Aligned_cols=161  Identities=21%  Similarity=0.182  Sum_probs=152.4

Q ss_pred             CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCH
Q 013643          211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEF  290 (439)
Q Consensus       211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~  290 (439)
                      ..+..|+||||.|+..|+.+++++|++.|++++..+                            ..|+||||+|+..|+.
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~----------------------------~~g~t~L~~A~~~~~~   81 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD----------------------------IEGSTALIWAVKNNRL   81 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCC----------------------------TTSCCHHHHHHHTTCH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccccc----------------------------ccCccHHHHHHHcCCH
Confidence            356679999999999999999999999887776554                            4578999999999999


Q ss_pred             HHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCc
Q 013643          291 YFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDIN  370 (439)
Q Consensus       291 eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin  370 (439)
                      +++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus        82 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  161 (192)
T 2rfm_A           82 GIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS  161 (192)
T ss_dssp             HHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 013643          371 LQDNDGWTPLHLAVQARRTDIVKLLLIKG  399 (439)
Q Consensus       371 ~~d~~G~TpLh~A~~~g~~eiv~~LL~~G  399 (439)
                      .+|..|+||||+|+..|+.+++++|+++|
T Consensus       162 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          162 ARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            99999999999999999999999999875

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=8.2e-29  Score=225.61  Aligned_cols=163  Identities=20%  Similarity=0.147  Sum_probs=152.5

Q ss_pred             CCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcC
Q 013643          209 TCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASG  288 (439)
Q Consensus       209 ~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g  288 (439)
                      ....+..|.||||.|+..|+.+++++|++.|++++..+                            ..|+||||+|+..|
T Consensus        32 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------------------~~g~t~l~~A~~~~   83 (201)
T 3hra_A           32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN----------------------------SISDSPYLYAGAQG   83 (201)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC----------------------------TTSCCHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------------------------CCCCCHHHHHHHcC
Confidence            34556789999999999999999999999998887654                            45678999999999


Q ss_pred             CHHHHHHHH-hCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCC-----HHHHHH
Q 013643          289 EFYFVDALL-KHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRES-ANPFVVDEDGATLLHYAVQTAS-----SPAIKI  361 (439)
Q Consensus       289 ~~eivk~LL-~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~g-a~v~~~d~~g~TpLh~A~~~g~-----~~iV~~  361 (439)
                      +.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+|+..++     .+++++
T Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~  163 (201)
T 3hra_A           84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL  163 (201)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred             CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence            999999999 667899999999999999999999999999999999 9999999999999999999998     999999


Q ss_pred             HHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 013643          362 LLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG  399 (439)
Q Consensus       362 Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~G  399 (439)
                      |+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       164 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999999999999999999999999999999999887

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=5.1e-30  Score=245.69  Aligned_cols=186  Identities=18%  Similarity=0.230  Sum_probs=154.0

Q ss_pred             CCCCCCcHHHHHHhc---CcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcC
Q 013643          212 QRVPPKNPKWAVYGR---GLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASG  288 (439)
Q Consensus       212 ~~~~g~t~l~~A~~~---g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g  288 (439)
                      .+..|+||||+|+..   |+.+++++|++.|++++...               .++.  ......+..|+||||+|+..|
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~---------------~~i~--~~~~~~d~~g~tpL~~A~~~g  112 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK---------------QFVN--ASYTDSYYKGQTALHIAIERR  112 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH---------------HHHT--CCCCSTTTTTCCHHHHHHHTT
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh---------------HHhh--cccccccCCCCCHHHHHHHcC
Confidence            466899999999986   99999999999997764321               1111  223335678999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCC--------------CCChHHHHHHHcCCHHHHHHHHH---CCCCCCccCCCCCCHHHHHH
Q 013643          289 EFYFVDALLKHNVDINAVDK--------------DGLTALHKAIIGKKQAVTNYLLR---ESANPFVVDEDGATLLHYAV  351 (439)
Q Consensus       289 ~~eivk~LL~~gadin~~d~--------------~g~t~L~~Aa~~g~~~iv~~LL~---~ga~v~~~d~~g~TpLh~A~  351 (439)
                      +.+++++|+++|++++..+.              .|.||||+|+..|+.+++++|++   +|++++.+|..|.||||+|+
T Consensus       113 ~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~  192 (273)
T 2pnn_A          113 NMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV  192 (273)
T ss_dssp             CHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHH
Confidence            99999999999999999987              79999999999999999999999   99999999999999999999


Q ss_pred             HcCC---------HHHHHHHHhCCCCCc-------cCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHH
Q 013643          352 QTAS---------SPAIKILLLYNVDIN-------LQDNDGWTPLHLAVQARRTDIVKLLLIKGA-DKTLKNRDGLTPLD  414 (439)
Q Consensus       352 ~~g~---------~~iV~~Ll~~gadin-------~~d~~G~TpLh~A~~~g~~eiv~~LL~~Ga-di~~~d~~G~TpL~  414 (439)
                      ..|+         .+++++|+++|++++       .+|..|+||||+|+..|+.++|++|+++|| |+......+.+|-+
T Consensus       193 ~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          193 EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             HccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence            9998         899999999999997       489999999999999999999999999999 88888777766643

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=3.5e-29  Score=224.91  Aligned_cols=167  Identities=18%  Similarity=0.179  Sum_probs=154.1

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHH
Q 013643          215 PPKNPKWAVYGRGLDDVSEFFNSG-NYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFV  293 (439)
Q Consensus       215 ~g~t~l~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eiv  293 (439)
                      .+.++|+.|+..|+.+++++|++. +.+++.                            .+..|+||||+||..|+.+++
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~----------------------------~~~~g~t~L~~A~~~~~~~~v   55 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQ----------------------------GDDHGFSPLHWACREGRSAVV   55 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTC----------------------------CCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccc----------------------------cCCCCCCHHHHHHHcCcHHHH
Confidence            467899999999999999999987 444443                            456788999999999999999


Q ss_pred             HHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCC
Q 013643          294 DALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD  373 (439)
Q Consensus       294 k~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d  373 (439)
                      ++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus        56 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  135 (179)
T 3f6q_A           56 EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN  135 (179)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCC
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 013643          374 NDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG  409 (439)
Q Consensus       374 ~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G  409 (439)
                      ..|+|||++|+..++.+++++|+++|++++..+..+
T Consensus       136 ~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          136 KYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             TTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence            999999999999999999999999999999877554

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=1.3e-29  Score=240.42  Aligned_cols=175  Identities=21%  Similarity=0.209  Sum_probs=157.6

Q ss_pred             CCCCCCcHHHHHHhc---CcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcC
Q 013643          212 QRVPPKNPKWAVYGR---GLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASG  288 (439)
Q Consensus       212 ~~~~g~t~l~~A~~~---g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g  288 (439)
                      .+..|+||||+|+..   |+.+++++|++.|++++... .     +         +  .......+..|+||||+|+..|
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~-~-----~---------~--~~~~~~~d~~g~t~L~~A~~~g  101 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPK-P-----L---------V--NAQCTDEFYQGHSALHIAIEKR  101 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSS-C-----G---------G--GCCCCSTTTTTCCHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchh-h-----h---------c--ccccccccccCCCHHHHHHHcC
Confidence            577899999999999   99999999999998887554 0     0         0  0122334567999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCC-------------CChHHHHHHHcCCHHHHHHHHH---CCCCCCccCCCCCCHHHHHHH
Q 013643          289 EFYFVDALLKHNVDINAVDKD-------------GLTALHKAIIGKKQAVTNYLLR---ESANPFVVDEDGATLLHYAVQ  352 (439)
Q Consensus       289 ~~eivk~LL~~gadin~~d~~-------------g~t~L~~Aa~~g~~~iv~~LL~---~ga~v~~~d~~g~TpLh~A~~  352 (439)
                      +.+++++|+++|++++..+..             |.||||+|+..|+.+++++|++   +|++++.+|..|.||||+|+.
T Consensus       102 ~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~  181 (256)
T 2etb_A          102 SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM  181 (256)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHH
Confidence            999999999999999998876             9999999999999999999999   999999999999999999999


Q ss_pred             --cCCHH-------HHHHHHhCCCCC-------ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 013643          353 --TASSP-------AIKILLLYNVDI-------NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKT  403 (439)
Q Consensus       353 --~g~~~-------iV~~Ll~~gadi-------n~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~  403 (439)
                        .++.+       ++++|+++|+++       +.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus       182 ~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          182 IADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence              78888       999999999999       9999999999999999999999999999987643

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=1.8e-30  Score=256.59  Aligned_cols=207  Identities=20%  Similarity=0.116  Sum_probs=177.8

Q ss_pred             CcHHHHHHHHhCCCCCCCCCCCCCCCcCC-hHHHHHHHhhcCCCcccC-----------------CCCCchHHHHHHHcC
Q 013643          227 GLDDVSEFFNSGNYDPPDKKSDGPRRKLF-TKEEKVLLNKKLPHLATA-----------------TSKKWLPLHSLAASG  288 (439)
Q Consensus       227 g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~-~~~~~~lL~~~~~d~~~~-----------------d~~g~tpLh~Aa~~g  288 (439)
                      ...+++++|++.|++++..+ ..|.++++ +.+++++|+++|++++..                 .......+|.|+..+
T Consensus        30 ~~~dlv~~ll~~ga~i~~~~-~~g~~~~~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~  108 (327)
T 1sw6_A           30 FTHDLTSDFLSSPLKIMKAL-PSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSL  108 (327)
T ss_dssp             CCTTCCCSTTTSSCCCEECB-CCCCCCCHHHHHHHHHHHHHHHC-------------------------------CHHHH
T ss_pred             hcCchHHHHhhCCcccccCC-CCCCcccCchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhh
Confidence            34578999999999999999 89999998 889999999999876651                 111122357788888


Q ss_pred             CHHHHHHHHhCCCCCcc-cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC---HHHHHHHHh
Q 013643          289 EFYFVDALLKHNVDINA-VDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS---SPAIKILLL  364 (439)
Q Consensus       289 ~~eivk~LL~~gadin~-~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~---~~iV~~Ll~  364 (439)
                      ..+++++|++.|+++|. .|..|+||||+||..|+.++|++|+++|++++.+|..|.||||+|+..|+   .++++.|++
T Consensus       109 ~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~  188 (327)
T 1sw6_A          109 LQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD  188 (327)
T ss_dssp             HHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHH
Confidence            88999999999999999 89999999999999999999999999999999999999999999999998   688888888


Q ss_pred             CC-CCCccCCCCCCcHHHHHHH----cCCHHHHHHHHHcCC---------------------------------------
Q 013643          365 YN-VDINLQDNDGWTPLHLAVQ----ARRTDIVKLLLIKGA---------------------------------------  400 (439)
Q Consensus       365 ~g-adin~~d~~G~TpLh~A~~----~g~~eiv~~LL~~Ga---------------------------------------  400 (439)
                      .+ ++++.+|..|+||||+|+.    .|+.+++++|++.++                                       
T Consensus       189 ~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~  268 (327)
T 1sw6_A          189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL  268 (327)
T ss_dssp             HHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSH
T ss_pred             hhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHH
Confidence            86 7899999999999999999    899999999998743                                       


Q ss_pred             ------CCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643          401 ------DKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       401 ------di~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                            +++.+|..|+||||+|+..|+.    +++++|++.+.+
T Consensus       269 ~~Ll~~~~n~~d~~G~TpLh~A~~~g~~----~~v~~Ll~~Gad  308 (327)
T 1sw6_A          269 KWIIANMLNAQDSNGDTCLNIAARLGNI----SIVDALLDYGAD  308 (327)
T ss_dssp             HHHHHHTTTCCCTTSCCHHHHHHHHCCH----HHHHHHHHTTCC
T ss_pred             HHHHHhCCCCCCCCCCCHHHHHHHcCCH----HHHHHHHHcCCC
Confidence                  6888899999999999999995    999999987653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=2.9e-30  Score=243.52  Aligned_cols=179  Identities=16%  Similarity=0.131  Sum_probs=137.3

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHH
Q 013643          214 VPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFV  293 (439)
Q Consensus       214 ~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eiv  293 (439)
                      ..|.|||+.|+..++.++++.|+++|++++..                             ..|.||||.|+..|+.+++
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-----------------------------~~~~t~L~~A~~~g~~~~v   53 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-----------------------------PLPLALLLDSSLEGEFDLV   53 (239)
T ss_dssp             ---------------------------------------------------------------CHHHHHHHHHHTCHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-----------------------------chhhHHHHHHHHcCCHHHH
Confidence            45889999999999999999999999887632                             2467999999999999999


Q ss_pred             HHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCC
Q 013643          294 DALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD  373 (439)
Q Consensus       294 k~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d  373 (439)
                      ++|+++|++++..|..|+||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++++..+
T Consensus        54 ~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  133 (239)
T 1ycs_B           54 QRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT  133 (239)
T ss_dssp             HHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC-cHHHHH--HHcCCHHHHHHHHHcCCCCCCC---------CCCCCCHHHHHHHcCC
Q 013643          374 NDGW-TPLHLA--VQARRTDIVKLLLIKGADKTLK---------NRDGLTPLDLCLYSGR  421 (439)
Q Consensus       374 ~~G~-TpLh~A--~~~g~~eiv~~LL~~Gadi~~~---------d~~G~TpL~~A~~~g~  421 (439)
                      ..|. ||||+|  +..|+.+++++|+++|++++..         +..+.+++++|...|.
T Consensus       134 ~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          134 YSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             SSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             CCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            8877 999999  7889999999999999998876         5668899998888886

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=3.5e-28  Score=212.79  Aligned_cols=150  Identities=22%  Similarity=0.257  Sum_probs=142.9

Q ss_pred             CcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHH
Q 013643          217 KNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDAL  296 (439)
Q Consensus       217 ~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~L  296 (439)
                      .++|+.|+..|+.+++++|++.|++++.                             +..|+||||+|+..|+.+++++|
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-----------------------------~~~g~t~L~~A~~~~~~~~v~~L   53 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFTT-----------------------------DWLGTSPLHLAAQYGHFSTTEVL   53 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCCC-----------------------------CTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCCc-----------------------------CCCCCCHHHHHHHcCCHHHHHHH
Confidence            4789999999999999999999876642                             34578999999999999999999


Q ss_pred             HhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCC
Q 013643          297 LKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDG  376 (439)
Q Consensus       297 L~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G  376 (439)
                      +++|++++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|
T Consensus        54 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  133 (153)
T 1awc_B           54 LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC  133 (153)
T ss_dssp             HTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHH
Q 013643          377 WTPLHLAVQARRTDIVKLL  395 (439)
Q Consensus       377 ~TpLh~A~~~g~~eiv~~L  395 (439)
                      +||||+|+..|+.+++++|
T Consensus       134 ~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          134 KTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHh
Confidence            9999999999999999997

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=2.1e-29  Score=239.20  Aligned_cols=173  Identities=18%  Similarity=0.210  Sum_probs=155.5

Q ss_pred             CCCCcHHHHHH---hcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCH
Q 013643          214 VPPKNPKWAVY---GRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEF  290 (439)
Q Consensus       214 ~~g~t~l~~A~---~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~  290 (439)
                      ..|+||||.|+   ..|+.+++++|++.|++++...              .+   ...+++..+..|+||||+||..|+.
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~--------------~~---~~~~~~~~d~~g~t~L~~A~~~g~~  106 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR--------------EF---INSPFRDVYYRGQTALHIAIERRCK  106 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH--------------HH---HTCCBCCSSEESBCHHHHHHHTTCH
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH--------------hh---hcccccccccCCCCHHHHHHHcCCH
Confidence            56999999999   7799999999999987765432              11   1244555667899999999999999


Q ss_pred             HHHHHHHhCCCCCcccC--------------CCCChHHHHHHHcCCHHHHHHHHH---CCCCCCccCCCCCCHHHHHHHc
Q 013643          291 YFVDALLKHNVDINAVD--------------KDGLTALHKAIIGKKQAVTNYLLR---ESANPFVVDEDGATLLHYAVQT  353 (439)
Q Consensus       291 eivk~LL~~gadin~~d--------------~~g~t~L~~Aa~~g~~~iv~~LL~---~ga~v~~~d~~g~TpLh~A~~~  353 (439)
                      +++++|+++|++++..+              ..|.||||+|+..|+.++|++|++   +|++++.+|..|.||||+|+..
T Consensus       107 ~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~  186 (260)
T 3jxi_A          107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAI  186 (260)
T ss_dssp             HHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHh
Confidence            99999999999999998              689999999999999999999999   9999999999999999999998


Q ss_pred             CC---------HHHHHHHHhCCCCC-------ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 013643          354 AS---------SPAIKILLLYNVDI-------NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKT  403 (439)
Q Consensus       354 g~---------~~iV~~Ll~~gadi-------n~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~  403 (439)
                      |+         .+++++|+++|+++       +.+|..|+||||+|+..|+.++|++|+++|++..
T Consensus       187 ~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          187 ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence            88         79999999999998       7799999999999999999999999999987654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.1e-28  Score=218.38  Aligned_cols=160  Identities=27%  Similarity=0.250  Sum_probs=145.1

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHH
Q 013643          213 RVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYF  292 (439)
Q Consensus       213 ~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~ei  292 (439)
                      +..+.++|+.|+..|+.+++++|++.+.                           .+++..+..|+||||+|+..|+.++
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~---------------------------~~~~~~~~~g~t~L~~A~~~~~~~~   57 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQS---------------------------VNCRDIEGRQSTPLHFAAGYNRVSV   57 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTT---------------------------TTCCCTTTTCCCHHHHHHHTTCHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCC---------------------------CCccccccCCCCHHHHHHHcChHHH
Confidence            3456799999999999999999997531                           1122345678899999999999999


Q ss_pred             HHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccC
Q 013643          293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQ  372 (439)
Q Consensus       293 vk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~  372 (439)
                      +++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+
T Consensus        58 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  137 (165)
T 3twr_A           58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK  137 (165)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 013643          373 DNDGWTPLHLAVQARRTDIVKLLLIKGA  400 (439)
Q Consensus       373 d~~G~TpLh~A~~~g~~eiv~~LL~~Ga  400 (439)
                      |..|+||||+|+. |+.+++++|+++||
T Consensus       138 ~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          138 NRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            9999999999877 99999999999886

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=5.6e-29  Score=240.12  Aligned_cols=161  Identities=22%  Similarity=0.201  Sum_probs=143.1

Q ss_pred             CCCCCCCcHHHHHHhcCcHHHHHHHHhCCC-CCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHH----
Q 013643          211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNY-DPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLA----  285 (439)
Q Consensus       211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga-~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa----  285 (439)
                      ..+..|+||||+|+..|+.+++++|++.|+ +++                            ..+..|+||||+|+    
T Consensus       106 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~----------------------------~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A          106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVD----------------------------KQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTT----------------------------CCCTTSCCHHHHGGGCCC
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCC----------------------------CCCCCCCCHHHHHHHHHh
Confidence            345566777777777777777777776665 444                            44567889999999    


Q ss_pred             -HcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh
Q 013643          286 -ASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLL  364 (439)
Q Consensus       286 -~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~  364 (439)
                       ..++.+++++|++.|.+++..+..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.++|++|++
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  237 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA  237 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence             6689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 013643          365 -YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG  399 (439)
Q Consensus       365 -~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~G  399 (439)
                       .|++++.+|..|+||||+|+..|+.+++++|++++
T Consensus       238 ~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          238 VPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             STTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             cCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence             89999999999999999999999999999999874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=8.7e-29  Score=217.70  Aligned_cols=147  Identities=20%  Similarity=0.177  Sum_probs=121.7

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCC-HHH
Q 013643          270 LATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGAT-LLH  348 (439)
Q Consensus       270 ~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~T-pLh  348 (439)
                      .+..+..|.||||+||..|+.+++++|+++|++++..+..|+||||+|+ .|+.+++++|+++|++++.++..|.| |||
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH   83 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            3455778899999999999999999999999999999999999999985 99999999999999999999999999 999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 013643          349 YAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCL  417 (439)
Q Consensus       349 ~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~  417 (439)
                      +|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||.+.+.
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~~  152 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPS  152 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999987543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=5.8e-30  Score=240.59  Aligned_cols=149  Identities=22%  Similarity=0.232  Sum_probs=126.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Q 013643          274 TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQT  353 (439)
Q Consensus       274 d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~  353 (439)
                      +..+.||||+||..|+.+++++|+++|++++..|..|+||||+||..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~   97 (229)
T 2vge_A           18 RLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASC   97 (229)
T ss_dssp             TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             ccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            34566788888888888889988888888888888888999999888888889888888888888888888999998888


Q ss_pred             CCHHHHHHHHhCCCCCccCC-CCCCcHHHHH--HHcCCHHHHHHHHHcCCCCC---------------------------
Q 013643          354 ASSPAIKILLLYNVDINLQD-NDGWTPLHLA--VQARRTDIVKLLLIKGADKT---------------------------  403 (439)
Q Consensus       354 g~~~iV~~Ll~~gadin~~d-~~G~TpLh~A--~~~g~~eiv~~LL~~Gadi~---------------------------  403 (439)
                      |+.++|++|+++|++++..+ ..|+||||+|  +..|+.+++++|+++|++++                           
T Consensus        98 g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga  177 (229)
T 2vge_A           98 NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGE  177 (229)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTC
T ss_pred             CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccc
Confidence            88888898888888888886 5888999888  88888888888888766543                           


Q ss_pred             -----CCCCCCCCHHHHHHHcCCc
Q 013643          404 -----LKNRDGLTPLDLCLYSGRD  422 (439)
Q Consensus       404 -----~~d~~G~TpL~~A~~~g~~  422 (439)
                           .+|..|+||||+|+..|+.
T Consensus       178 ~~~~~~~d~~G~TpL~~A~~~g~~  201 (229)
T 2vge_A          178 SVTVLRRDGPEETDWWWAALHGQE  201 (229)
T ss_dssp             EEEEEESSCTTCSSEEEEEETTEE
T ss_pred             cccccccCCCcccHHHHHHHcCCc
Confidence                 3566788999999998886

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=1.1e-27  Score=209.64  Aligned_cols=153  Identities=24%  Similarity=0.222  Sum_probs=142.8

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHH
Q 013643          216 PKNPKWAVYGRGLDDVSEFFNSG-NYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVD  294 (439)
Q Consensus       216 g~t~l~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk  294 (439)
                      +.|+|+.|+..|+.+++++|++. +.+++.                            .+..|+||||+ |..|+.++++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~----------------------------~~~~g~t~L~~-~~~~~~~~v~   52 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDA----------------------------LNRFGKTALQV-MMFGSTAIAL   52 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTC----------------------------CCTTSCCHHHH-SCTTCHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccc----------------------------cCCCCCcHHHH-HHcCCHHHHH
Confidence            45899999999999999999987 224443                            34568899999 9999999999


Q ss_pred             HHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCC
Q 013643          295 ALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDN  374 (439)
Q Consensus       295 ~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~  374 (439)
                      +|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. ++++.+|.
T Consensus        53 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~  131 (156)
T 1bd8_A           53 ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA  131 (156)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc
Q 013643          375 DGWTPLHLAVQARRTDIVKLLLIK  398 (439)
Q Consensus       375 ~G~TpLh~A~~~g~~eiv~~LL~~  398 (439)
                      .|+||||+|+..|+.+++++|+++
T Consensus       132 ~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          132 RGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999999999974

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=2.8e-28  Score=209.48  Aligned_cols=134  Identities=22%  Similarity=0.255  Sum_probs=118.5

Q ss_pred             CCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCC-CCC
Q 013643          267 LPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDED-GAT  345 (439)
Q Consensus       267 ~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~-g~T  345 (439)
                      +++++..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+. |+.+++++|+++|++++.++.. |.|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            46777788888899999999999999999999998888888888999999988 8999999999988888888888 889


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 013643          346 LLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD  401 (439)
Q Consensus       346 pLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gad  401 (439)
                      |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|||
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999988999888888899999999998999999999888886

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1.8e-28  Score=231.26  Aligned_cols=156  Identities=22%  Similarity=0.327  Sum_probs=116.5

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC
Q 013643          275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTA  354 (439)
Q Consensus       275 ~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g  354 (439)
                      ..|.||||.|+..|+.++++.|+++|++++.. ..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            45889999999999999999999999999864 77899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHH--HHcCCcchHHHHHHH
Q 013643          355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGL-TPLDLC--LYSGRDTRTFGMIKL  431 (439)
Q Consensus       355 ~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~-TpL~~A--~~~g~~~~~~eiik~  431 (439)
                      +.++|++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|+|++.++..|. |||++|  +..|+.    +++++
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~----~~~~~  157 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT----QCSQF  157 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCC----CHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccH----HHHHH
Confidence            99999999999999999999999999999999999999999999999999998877 999999  788887    77888


Q ss_pred             HhcC
Q 013643          432 LKQL  435 (439)
Q Consensus       432 L~~~  435 (439)
                      |++.
T Consensus       158 Ll~~  161 (239)
T 1ycs_B          158 LYGV  161 (239)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7763

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=2.7e-27  Score=203.25  Aligned_cols=133  Identities=20%  Similarity=0.226  Sum_probs=128.2

Q ss_pred             CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCC-CCc
Q 013643          300 NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDND-GWT  378 (439)
Q Consensus       300 gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~-G~T  378 (439)
                      +++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++.++.. |+|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            57889999999999999999999999999999999999999999999999999 9999999999999999999999 999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643          379 PLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       379 pLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~  437 (439)
                      |||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.    +++++|++.+.
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~----~~~~~Ll~~Ga  135 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHR----DIARYLHAATG  135 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCH----HHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH----HHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999995    99999988654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=1.1e-27  Score=218.11  Aligned_cols=155  Identities=16%  Similarity=0.159  Sum_probs=137.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCcccC-CCCChHHHHHHHcCCH----HHHHHHHHCCCCCCccCCCCCCHHHHHH
Q 013643          277 KWLPLHSLAASGEFYFVDALLKHNVDINAVD-KDGLTALHKAIIGKKQ----AVTNYLLRESANPFVVDEDGATLLHYAV  351 (439)
Q Consensus       277 g~tpLh~Aa~~g~~eivk~LL~~gadin~~d-~~g~t~L~~Aa~~g~~----~iv~~LL~~ga~v~~~d~~g~TpLh~A~  351 (439)
                      ++++|+.||..|+++.++.++..+.+  ..+ ..|+||||+|+..|+.    +++++|+++|++++.++..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            45789999999999999999987754  444 6799999999999975    5999999999999999999999999999


Q ss_pred             HcCC------HHHHHHHHhCCCCCccCCCCCC-cHHHHHHHcC-----CHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHH
Q 013643          352 QTAS------SPAIKILLLYNVDINLQDNDGW-TPLHLAVQAR-----RTDIVKLLLI-KGADKTLKNRDGLTPLDLCLY  418 (439)
Q Consensus       352 ~~g~------~~iV~~Ll~~gadin~~d~~G~-TpLh~A~~~g-----~~eiv~~LL~-~Gadi~~~d~~G~TpL~~A~~  418 (439)
                      ..|+      .+++++|+++|+++|.+|..|+ ||||+|+..+     +.+++++|++ +|+|++.+|..|.||||+|+.
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~  163 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR  163 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence            9987      6889999999999999999999 9999999844     4679999999 999999999999999999999


Q ss_pred             cCCcchHHHHHHHHh
Q 013643          419 SGRDTRTFGMIKLLK  433 (439)
Q Consensus       419 ~g~~~~~~eiik~L~  433 (439)
                      .|+...+..+.+|++
T Consensus       164 ~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          164 CQKPIALKMMEDYIK  178 (186)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            999744444444443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=4.2e-26  Score=191.20  Aligned_cols=126  Identities=38%  Similarity=0.518  Sum_probs=112.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643          276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS  355 (439)
Q Consensus       276 ~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~  355 (439)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            47789999999999999999999998888888888999999999999999999999998888888889999999999999


Q ss_pred             HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 013643          356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD  401 (439)
Q Consensus       356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gad  401 (439)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|||
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999888888899999999999999999999988886

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=6.2e-26  Score=194.76  Aligned_cols=124  Identities=27%  Similarity=0.281  Sum_probs=82.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643          276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS  355 (439)
Q Consensus       276 ~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~  355 (439)
                      .+.||||+||..|+.+++++|+++|++++..|..|.||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~   92 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH   92 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence            34566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 013643          356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG  399 (439)
Q Consensus       356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~G  399 (439)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        93 ~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           93 LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            66666666666666666666666666666666666666666654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=1.5e-25  Score=192.39  Aligned_cols=126  Identities=28%  Similarity=0.372  Sum_probs=120.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHc
Q 013643          307 DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQA  386 (439)
Q Consensus       307 d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~  386 (439)
                      ...+.||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643          387 RRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       387 g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~  436 (439)
                      |+.+++++|+++|++++.+|..|.|||++|+..|+.    +++++|++++
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~----~~~~~Ll~~G  136 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE----DLAEILQKLN  136 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHC-
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCH----HHHHHHHHcC
Confidence            999999999999999999999999999999999995    9999998864

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=6.1e-27  Score=213.22  Aligned_cols=163  Identities=15%  Similarity=0.117  Sum_probs=142.3

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCH----H
Q 013643          216 PKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEF----Y  291 (439)
Q Consensus       216 g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~----e  291 (439)
                      +.++++.|+..|+.+.++.++..+.+  ..+                           +..|+||||+|+..|+.    +
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~---------------------------~~~g~T~Lh~A~~~~~~~~~~~   56 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKE---------------------------SVLKSNILYDVLRNNNDEARYK   56 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS--CHH---------------------------HHHTTTHHHHHTTCSCHHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc--ccc---------------------------ccCCCCHHHHHHHcCCcchHHH
Confidence            34678999999999998888876522  111                           24588999999999975    5


Q ss_pred             HHHHHHhCCCCCcccCCCCChHHHHHHHcCC------HHHHHHHHHCCCCCCccCCCCC-CHHHHHHHcC-----CHHHH
Q 013643          292 FVDALLKHNVDINAVDKDGLTALHKAIIGKK------QAVTNYLLRESANPFVVDEDGA-TLLHYAVQTA-----SSPAI  359 (439)
Q Consensus       292 ivk~LL~~gadin~~d~~g~t~L~~Aa~~g~------~~iv~~LL~~ga~v~~~d~~g~-TpLh~A~~~g-----~~~iV  359 (439)
                      ++++|+++|+++|.++..|+||||+|+..++      .+++++|+++|++++.+|..|. ||||+|+..+     +.+++
T Consensus        57 iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv  136 (186)
T 3t8k_A           57 ISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLY  136 (186)
T ss_dssp             HHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHH
Confidence            9999999999999999999999999999887      6889999999999999999999 9999999954     45799


Q ss_pred             HHHHh-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 013643          360 KILLL-YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNR  407 (439)
Q Consensus       360 ~~Ll~-~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~  407 (439)
                      ++|++ +|++++.+|..|+||||+|++.|+.++|++|+++..+.+.++.
T Consensus       137 ~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~~  185 (186)
T 3t8k_A          137 KLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN  185 (186)
T ss_dssp             HHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC-
T ss_pred             HHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcccC
Confidence            99999 9999999999999999999999999999999988766666553

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=2.1e-26  Score=197.56  Aligned_cols=131  Identities=31%  Similarity=0.365  Sum_probs=85.1

Q ss_pred             CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcH
Q 013643          300 NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTP  379 (439)
Q Consensus       300 gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~Tp  379 (439)
                      |+|+ .+|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            4455 456666666666666666666666666666666666667777777777777777777777777777666667777


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643          380 LHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       380 Lh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~  435 (439)
                      ||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+..    +++++|.+.
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~----~~l~~l~~~  131 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK----SLLLLPEKN  131 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHH----HHHSCC---
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHH----HHHhhcccc
Confidence            7777777777777777777777777777777777766655543    555555543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=6.5e-25  Score=183.92  Aligned_cols=125  Identities=37%  Similarity=0.523  Sum_probs=121.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCC
Q 013643          309 DGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR  388 (439)
Q Consensus       309 ~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~  388 (439)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643          389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       389 ~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~  437 (439)
                      .+++++|+++|++++.+|..|.|||++|+..|+.    +++++|++.+.
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~----~~~~~Ll~~Ga  125 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL----EVVKLLLEAGA  125 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcH----HHHHHHHHcCC
Confidence            9999999999999999999999999999999995    99999998765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=2.9e-25  Score=195.07  Aligned_cols=130  Identities=22%  Similarity=0.238  Sum_probs=120.5

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCc-HHHH
Q 013643          304 NAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWT-PLHL  382 (439)
Q Consensus       304 n~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~T-pLh~  382 (439)
                      +..+..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++.++..|+| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            345678999999999999999999999999999999999999999985 99999999999999999999999999 9999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643          383 AVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       383 A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.    +++++|++.+.+
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~----~~v~~Ll~~ga~  136 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR----DVARYLRAAAGG  136 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCH----HHHHHHSSCC--
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHH----HHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999995    999999987653

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=9.1e-26  Score=193.61  Aligned_cols=133  Identities=22%  Similarity=0.201  Sum_probs=121.7

Q ss_pred             CCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCH
Q 013643          267 LPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATL  346 (439)
Q Consensus       267 ~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~Tp  346 (439)
                      |+|+ ..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            4556 678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 013643          347 LHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA  400 (439)
Q Consensus       347 Lh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Ga  400 (439)
                      ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..+..+++++|.+.+.
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            999999999999999999999999999999999999999999999998886654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=2.5e-24  Score=210.59  Aligned_cols=140  Identities=18%  Similarity=0.165  Sum_probs=127.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCcc------cCCCCChHHHHHHHc---CCHHHHHHHHHCCCCCCccCCCCCCHH
Q 013643          277 KWLPLHSLAASGEFYFVDALLKHNVDINA------VDKDGLTALHKAIIG---KKQAVTNYLLRESANPFVVDEDGATLL  347 (439)
Q Consensus       277 g~tpLh~Aa~~g~~eivk~LL~~gadin~------~d~~g~t~L~~Aa~~---g~~~iv~~LL~~ga~v~~~d~~g~TpL  347 (439)
                      ..++|+.|+..|+++.++.|++.|++++.      .+..|.||||+|+..   |+.+++++|+++|++++.+|..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            45789999999999999999999999998      688999999999997   899999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCc
Q 013643          348 HYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD  422 (439)
Q Consensus       348 h~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~  422 (439)
                      |+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++      .|.||||+|+..|+.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            999999999999999999999999999999999999999999999999999987      588999999999984

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.92  E-value=5.2e-27  Score=236.54  Aligned_cols=204  Identities=13%  Similarity=0.038  Sum_probs=118.8

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHhCCCCCC---CCCCCCCCCcCC------hHHHHHHHhhcCCCc---ccCCCCCchHHHH
Q 013643          216 PKNPKWAVYGRGLDDVSEFFNSGNYDPP---DKKSDGPRRKLF------TKEEKVLLNKKLPHL---ATATSKKWLPLHS  283 (439)
Q Consensus       216 g~t~l~~A~~~g~~eiv~~Ll~~ga~~n---~~~~~~g~t~L~------~~~~~~lL~~~~~d~---~~~d~~g~tpLh~  283 (439)
                      +.||||.|+..|+.+++++|++.|+...   ..+ ..|.|||+      +.+++++|+++|+++   +..+.. +||||+
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~-~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~  169 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ-AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL  169 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--C-HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhc-cCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence            4599999999999999999999987322   122 33445665      556666666666541   111112 566666


Q ss_pred             HHHcCCHHHHHHHHhCCCCCcc--cCCCCChHHHHHH-HcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHH
Q 013643          284 LAASGEFYFVDALLKHNVDINA--VDKDGLTALHKAI-IGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIK  360 (439)
Q Consensus       284 Aa~~g~~eivk~LL~~gadin~--~d~~g~t~L~~Aa-~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~  360 (439)
                      ||..|+.++|++|+++|++++.  .+..|.||||+|+ ..|+.++|++|+++|+       .|.||||+|+.+|+.++++
T Consensus       170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~  242 (376)
T 2aja_A          170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNP  242 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHH
T ss_pred             HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHH
Confidence            6666666666666666666554  5555666666666 6666666666666543       1556666666666666666


Q ss_pred             HHHhCCCCCccCCCCCCcHHHHHHHcC---------------------------CHHHHHHHHHcCC-----CCCCCCCC
Q 013643          361 ILLLYNVDINLQDNDGWTPLHLAVQAR---------------------------RTDIVKLLLIKGA-----DKTLKNRD  408 (439)
Q Consensus       361 ~Ll~~gadin~~d~~G~TpLh~A~~~g---------------------------~~eiv~~LL~~Ga-----di~~~d~~  408 (439)
                      +|+++|++++..+.    ++++|+..|                           ..+.+++|++.++     +.......
T Consensus       243 lL~~~ga~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~  318 (376)
T 2aja_A          243 FIARHVNRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD  318 (376)
T ss_dssp             HHHHHHHHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTC
T ss_pred             HHHhcCcccccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCC
Confidence            66666555443321    111121111                           2334444443210     01112234


Q ss_pred             CCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643          409 GLTPLDLCLYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       409 G~TpL~~A~~~g~~~~~~eiik~L~~~~  436 (439)
                      +.|||++|+..|+.    +++++|++.+
T Consensus       319 ~~~~L~~A~~~g~~----e~v~lLl~~~  342 (376)
T 2aja_A          319 ANELLRLALRLGNQ----GACALLLSIP  342 (376)
T ss_dssp             CCHHHHHHHHHTCT----THHHHHTTSH
T ss_pred             ccHHHHHHHHcCcH----HHHHHHHcCh
Confidence            66899999999996    8999998764

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=1.3e-24  Score=196.10  Aligned_cols=140  Identities=25%  Similarity=0.275  Sum_probs=130.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCCHHHHHHH
Q 013643          274 TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQ  352 (439)
Q Consensus       274 d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d-~~g~TpLh~A~~  352 (439)
                      +..|+||||+|+..|+.+++++|++ |++++..|..|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            3467899999999999999999999 99999999999999999999999999999999999999988 899999999999


Q ss_pred             cCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHH
Q 013643          353 TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL  432 (439)
Q Consensus       353 ~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L  432 (439)
                      .|+.+++++|+++|++++.+|..|+||||+|++.++.                 ..+.++|++|+..|+.    +++++|
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~----~i~~~L  178 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLE----KVINVL  178 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHH----HHHHHH
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHH----HHHHHH
Confidence            9999999999999999999999999999999875422                 3578999999999995    999999


Q ss_pred             hcC
Q 013643          433 KQL  435 (439)
Q Consensus       433 ~~~  435 (439)
                      .+.
T Consensus       179 ~~~  181 (183)
T 3deo_A          179 EGQ  181 (183)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            875

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=5e-25  Score=204.56  Aligned_cols=136  Identities=24%  Similarity=0.283  Sum_probs=116.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHH
Q 013643          274 TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRE-SANPFVVDEDGATLLHYAVQ  352 (439)
Q Consensus       274 d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~-ga~v~~~d~~g~TpLh~A~~  352 (439)
                      +..|.||||+||..|+.+++++|++.|++++.+|..|+||||+||..|+.++|++|+++ |++++.+|..|.||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            55678999999999999999999999999999999999999999999999999999998 99999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 013643          353 TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG  409 (439)
Q Consensus       353 ~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G  409 (439)
                      .|+.++|++|+++|++++.+|..|+||||+|+..|+.++++.|+++|++.+..+..|
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            999999999999999999999999999999999999999999999999988877654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=2.4e-24  Score=203.87  Aligned_cols=138  Identities=25%  Similarity=0.278  Sum_probs=128.5

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCCHHHHHHHc
Q 013643          275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQT  353 (439)
Q Consensus       275 ~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d-~~g~TpLh~A~~~  353 (439)
                      ..|.||||+||..|+.+++++|++ |+++|..|..|+||||+||..|+.++|++|+++|++++.++ ..|.||||+|+..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            457899999999999999999999 99999999999999999999999999999999999999988 7899999999999


Q ss_pred             CCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHh
Q 013643          354 ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK  433 (439)
Q Consensus       354 g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~  433 (439)
                      |+.++|++|+++|++++.+|..|+||||+|+..++                 ...+.|||++|+..|+.    +++++|.
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~----~iv~~L~  180 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLE----KVINVLE  180 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHH----HHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChH----HHHHHHH
Confidence            99999999999999999999999999999986332                 25689999999999996    7888887


Q ss_pred             c
Q 013643          434 Q  434 (439)
Q Consensus       434 ~  434 (439)
                      +
T Consensus       181 ~  181 (244)
T 3ui2_A          181 G  181 (244)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=3.3e-24  Score=201.21  Aligned_cols=139  Identities=25%  Similarity=0.378  Sum_probs=121.7

Q ss_pred             HHHHHhCCCCCcccC---CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Q 013643          293 VDALLKHNVDINAVD---KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDI  369 (439)
Q Consensus       293 vk~LL~~gadin~~d---~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadi  369 (439)
                      ++.|+++|++++..+   ..+.|+||+||..|+.++|++|++.|++++.+|..|.||||+|+..|+.++|++|+++|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            467889999877554   45668899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHH--HHcCCcchHHHHHHHHhcC
Q 013643          370 NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKN-RDGLTPLDLC--LYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       370 n~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d-~~G~TpL~~A--~~~g~~~~~~eiik~L~~~  435 (439)
                      +.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|.|||++|  +..|+.    +++++|++.
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~----~~v~~Ll~~  145 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA----DCATYLADV  145 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHH----HHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChH----HHHHHHHHc
Confidence            9999999999999999999999999999999999986 6999999999  888885    899999874

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=1.1e-23  Score=177.31  Aligned_cols=110  Identities=32%  Similarity=0.343  Sum_probs=91.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHc
Q 013643          307 DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQA  386 (439)
Q Consensus       307 d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~  386 (439)
                      +..|.|+||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34567888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 013643          387 RRTDIVKLLLIKGADKTLKNRDGLTPLDLC  416 (439)
Q Consensus       387 g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A  416 (439)
                      |+.+++++|+++|++++.+|..|.|||++|
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            888888888888888888888888888888

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=6.2e-24  Score=178.84  Aligned_cols=117  Identities=21%  Similarity=0.169  Sum_probs=108.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Q 013643          274 TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQT  353 (439)
Q Consensus       274 d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~  353 (439)
                      +..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHH
Q 013643          354 ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTD  390 (439)
Q Consensus       354 g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~e  390 (439)
                      |+.+++++|+++|++++.+|..|+||||+|...+..+
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence            9999999999999999999999999999995443333

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=4.2e-24  Score=198.30  Aligned_cols=128  Identities=24%  Similarity=0.272  Sum_probs=116.5

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCccCCCCCCcHHHHHH
Q 013643          306 VDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLY-NVDINLQDNDGWTPLHLAV  384 (439)
Q Consensus       306 ~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~-gadin~~d~~G~TpLh~A~  384 (439)
                      .+..|.||||+||..|+.+++++|++.|++++.+|..|.||||+|+..|+.++|++|++. |++++.+|..|+||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643          385 QARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       385 ~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~  437 (439)
                      ..|+.++|++|+++|++++.+|..|.|||++|+..|+.    ++++.|.+...
T Consensus       149 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~----~~l~~l~~~~~  197 (222)
T 3ehr_A          149 WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACA----SLLKKKQGTDA  197 (222)
T ss_dssp             HHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHH----HHHC-------
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHH----HHHHHHhccch
Confidence            99999999999999999999999999999999988874    88888877654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=5.5e-25  Score=198.64  Aligned_cols=117  Identities=26%  Similarity=0.331  Sum_probs=111.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCC-CCCCcHHHHHHH
Q 013643          307 DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD-NDGWTPLHLAVQ  385 (439)
Q Consensus       307 d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d-~~G~TpLh~A~~  385 (439)
                      +..|.||||+||..|+.+++++|++ |++++.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4578899999999999999999999 99999999999999999999999999999999999999998 899999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcch
Q 013643          386 ARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTR  424 (439)
Q Consensus       386 ~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~  424 (439)
                      .|+.+++++|+++|++++.+|..|.|||++|+..++...
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~  158 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP  158 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCC
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcc
Confidence            999999999999999999999999999999999876543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=2e-22  Score=194.82  Aligned_cols=190  Identities=19%  Similarity=0.234  Sum_probs=145.1

Q ss_pred             CCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcC-ChHH--HHHHHhhcCC-CcccCCCCCchHHHHHHHc
Q 013643          212 QRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKL-FTKE--EKVLLNKKLP-HLATATSKKWLPLHSLAAS  287 (439)
Q Consensus       212 ~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L-~~~~--~~~lL~~~~~-d~~~~d~~g~tpLh~Aa~~  287 (439)
                      .+.-+.+.++.+...|+..+.+++...-....... ....... ...+  ..+++..... ..........++|+.|+..
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~k-P~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~  140 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVK-PNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT  140 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCS-CCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCC-CCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence            44456678899999999888877765432221101 0000111 1111  1112222211 1111222335789999999


Q ss_pred             CCHHHHHHHHhCCCCCc------ccCCCCChHHHHHHHc---CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH
Q 013643          288 GEFYFVDALLKHNVDIN------AVDKDGLTALHKAIIG---KKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPA  358 (439)
Q Consensus       288 g~~eivk~LL~~gadin------~~d~~g~t~L~~Aa~~---g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~i  358 (439)
                      |+.+.++.+++.|++++      ..+..|+||||+|+..   |+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus       141 ~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~  220 (278)
T 1dcq_A          141 RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC  220 (278)
T ss_dssp             TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999954      4478899999999999   89999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 013643          359 IKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK  402 (439)
Q Consensus       359 V~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi  402 (439)
                      |++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus       221 v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999864

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=6.3e-23  Score=194.10  Aligned_cols=142  Identities=20%  Similarity=0.196  Sum_probs=128.2

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHH
Q 013643          214 VPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFV  293 (439)
Q Consensus       214 ~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eiv  293 (439)
                      ..|.||||.|+..|+.+++++|++ |++++..+                            ..|+||||+||..|+.+++
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d----------------------------~~g~t~L~~A~~~g~~~~v   93 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVD----------------------------ENGRTALLFVAGLGSDKCV   93 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBC----------------------------TTSCBHHHHHHHHTCHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcC----------------------------CCCCCHHHHHHHCCCHHHH
Confidence            357899999999999999999998 87776554                            5678999999999999999


Q ss_pred             HHHHhCCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccC
Q 013643          294 DALLKHNVDINAVD-KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQ  372 (439)
Q Consensus       294 k~LL~~gadin~~d-~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~  372 (439)
                      ++|+++|++++..+ ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++                 
T Consensus        94 ~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------  156 (244)
T 3ui2_A           94 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------  156 (244)
T ss_dssp             HHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------
T ss_pred             HHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------
Confidence            99999999999998 789999999999999999999999999999999999999999986322                 


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 013643          373 DNDGWTPLHLAVQARRTDIVKLLLIKGAD  401 (439)
Q Consensus       373 d~~G~TpLh~A~~~g~~eiv~~LL~~Gad  401 (439)
                      ...+.||||+|+..|+.+++++|++++.+
T Consensus       157 ~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          157 TTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             TCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             ccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            25789999999999999999999986443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.88  E-value=7.5e-25  Score=220.77  Aligned_cols=146  Identities=11%  Similarity=0.015  Sum_probs=116.5

Q ss_pred             chHHHHHHHcCCHHHHHHHHhCCCCC---cccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC---CccCCCCCCHHHHHH
Q 013643          278 WLPLHSLAASGEFYFVDALLKHNVDI---NAVDKDGLTALHKAIIGKKQAVTNYLLRESANP---FVVDEDGATLLHYAV  351 (439)
Q Consensus       278 ~tpLh~Aa~~g~~eivk~LL~~gadi---n~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v---~~~d~~g~TpLh~A~  351 (439)
                      .||||+||..|+.++|++|+++|+..   +..+..|.||||+||..|+.++|++|+++|+++   +..+.+ .||||+|+
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa  171 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA  171 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence            48999999999999999999988732   233445778999999999999999999998752   222223 88999999


Q ss_pred             HcCCHHHHHHHHhCCCCCcc--CCCCCCcHHHHHH-HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHH
Q 013643          352 QTASSPAIKILLLYNVDINL--QDNDGWTPLHLAV-QARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGM  428 (439)
Q Consensus       352 ~~g~~~iV~~Ll~~gadin~--~d~~G~TpLh~A~-~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~ei  428 (439)
                      ..|+.++|++|+++|++++.  .|..|+||||+|+ ..|+.++|++|+++|++       |.|||++|+..|+.    ++
T Consensus       172 ~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~----ev  240 (376)
T 2aja_A          172 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEK----YV  240 (376)
T ss_dssp             HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTT----TH
T ss_pred             HCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCH----HH
Confidence            99999999999999998877  7888899999999 99999999999987753       78899999999986    78


Q ss_pred             HHHHhcC
Q 013643          429 IKLLKQL  435 (439)
Q Consensus       429 ik~L~~~  435 (439)
                      +++|++.
T Consensus       241 v~lL~~~  247 (376)
T 2aja_A          241 NPFIARH  247 (376)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            8888764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=1.9e-22  Score=202.61  Aligned_cols=147  Identities=24%  Similarity=0.268  Sum_probs=120.7

Q ss_pred             CCCchHHHHHHHc-CCHHHHHHHHhCCCCCcccC--CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH
Q 013643          275 SKKWLPLHSLAAS-GEFYFVDALLKHNVDINAVD--KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAV  351 (439)
Q Consensus       275 ~~g~tpLh~Aa~~-g~~eivk~LL~~gadin~~d--~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~  351 (439)
                      ..+.|+||.|+.. |+++++++|+++|+++|..+  ..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~  276 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT  276 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3456899999999 99999999999999999988  88999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCCHHHHHHHcCC
Q 013643          352 QTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG---ADKTLKNRDGLTPLDLCLYSGR  421 (439)
Q Consensus       352 ~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~G---adi~~~d~~G~TpL~~A~~~g~  421 (439)
                      ..|+.++|++|+++|++++..|..|+||||+|+..|+.+++++|+.+|   ++....+..+.|+++++.....
T Consensus       277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~  349 (368)
T 3jue_A          277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSL  349 (368)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999876   3444566778899888776654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=4.5e-21  Score=185.26  Aligned_cols=179  Identities=20%  Similarity=0.137  Sum_probs=145.4

Q ss_pred             hHHHHHHHhhcCCCccc-----CCCCCchHHHHHHHcCCHHHHHHHHhCCCC-----Cccc-------------------
Q 013643          256 TKEEKVLLNKKLPHLAT-----ATSKKWLPLHSLAASGEFYFVDALLKHNVD-----INAV-------------------  306 (439)
Q Consensus       256 ~~~~~~lL~~~~~d~~~-----~d~~g~tpLh~Aa~~g~~eivk~LL~~gad-----in~~-------------------  306 (439)
                      +.+...+....|..+..     .|..+.+.++.+...|+..+.+++...-..     ++..                   
T Consensus        40 c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f  119 (278)
T 1dcq_A           40 CIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRY  119 (278)
T ss_dssp             CHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTT
T ss_pred             cHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhc
Confidence            45555555555655543     466777889999999987766655432111     1100                   


Q ss_pred             -------CCCCChHHHHHHHcCCHHHHHHHHHCCCCCC------ccCCCCCCHHHHHHHc---CCHHHHHHHHhCCCCCc
Q 013643          307 -------DKDGLTALHKAIIGKKQAVTNYLLRESANPF------VVDEDGATLLHYAVQT---ASSPAIKILLLYNVDIN  370 (439)
Q Consensus       307 -------d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~------~~d~~g~TpLh~A~~~---g~~~iV~~Ll~~gadin  370 (439)
                             .....++|+.|+..|+.+.+..+++.|++++      ..+..|.||||+|+..   |+.+++++|+++|+++|
T Consensus       120 ~~~~~~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in  199 (278)
T 1dcq_A          120 ARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD  199 (278)
T ss_dssp             SCCCSSSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT
T ss_pred             ccccccccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc
Confidence                   0012368999999999999999999999954      4478999999999999   89999999999999999


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643          371 LQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       371 ~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                      .+|..|+||||+|+..|+.++|++|+++|||++.+|..|.||||+|+..|+.    +++++|++.+..
T Consensus       200 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~----~~v~~Ll~~ga~  263 (278)
T 1dcq_A          200 KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE----HCEELLTQALSG  263 (278)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHHHTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCH----HHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999995    899999886543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=1.7e-22  Score=197.46  Aligned_cols=146  Identities=20%  Similarity=0.110  Sum_probs=125.3

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHc---CCHHH
Q 013643          216 PKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAAS---GEFYF  292 (439)
Q Consensus       216 g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~---g~~ei  292 (439)
                      ..++|+.|+..|+.++++.|++.|++++... .                     ....+..|+||||+|+..   |+.++
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~-~---------------------~~~~~~~g~t~Lh~A~~~~~~~~~~i  208 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPL-P---------------------GPDAQAPEELVLHLAVKVANQASLPL  208 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCE-E---------------------CSSSCSCEECHHHHHHHTCCTTTHHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccC-C---------------------CcccCCCCccHHHHHHHhcccCcHHH
Confidence            3467999999999999999999999987642 0                     001356789999999997   89999


Q ss_pred             HHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccC
Q 013643          293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQ  372 (439)
Q Consensus       293 vk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~  372 (439)
                      +++|+++|+++|..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++    
T Consensus       209 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----  284 (301)
T 2b0o_E          209 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG----  284 (301)
T ss_dssp             HHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----
T ss_pred             HHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999876    


Q ss_pred             CCCCCcHHHHHHHcCCH
Q 013643          373 DNDGWTPLHLAVQARRT  389 (439)
Q Consensus       373 d~~G~TpLh~A~~~g~~  389 (439)
                        .|.||||+|+..|+.
T Consensus       285 --~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          285 --TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             --TTSSCCC--------
T ss_pred             --CCCChhHHHHhcCCc
Confidence              588999999998864

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.3e-21  Score=156.60  Aligned_cols=92  Identities=38%  Similarity=0.512  Sum_probs=69.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCH
Q 013643          310 GLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRT  389 (439)
Q Consensus       310 g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~  389 (439)
                      |+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            66777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCC
Q 013643          390 DIVKLLLIKGAD  401 (439)
Q Consensus       390 eiv~~LL~~Gad  401 (439)
                      +++++|+++||+
T Consensus        82 ~~~~~Ll~~ga~   93 (93)
T 1n0q_A           82 EVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            777777777764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=7.2e-22  Score=163.96  Aligned_cols=108  Identities=34%  Similarity=0.417  Sum_probs=77.7

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHH
Q 013643          306 VDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQ  385 (439)
Q Consensus       306 ~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~  385 (439)
                      +|..|+||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHH
Q 013643          386 ARRTDIVKLLLIKGADKTLKNRDGLTPL  413 (439)
Q Consensus       386 ~g~~eiv~~LL~~Gadi~~~d~~G~TpL  413 (439)
                      .|+.+++++|+++|+|++.++..|.||-
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            7777777777777777777777776663

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=4.7e-21  Score=192.44  Aligned_cols=125  Identities=26%  Similarity=0.291  Sum_probs=118.3

Q ss_pred             CCCCChHHHHHHHc-CCHHHHHHHHHCCCCCCccC--CCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHH
Q 013643          307 DKDGLTALHKAIIG-KKQAVTNYLLRESANPFVVD--EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLA  383 (439)
Q Consensus       307 d~~g~t~L~~Aa~~-g~~~iv~~LL~~ga~v~~~d--~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A  383 (439)
                      ...+.|+||.|+.. |+.+++++|+++|++++..+  ..|.||||+|+..|+.++|++|+++|+++|..|..|+||||+|
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            34567899999999 99999999999999999988  8999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643          384 VQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       384 ~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~  435 (439)
                      +..|+.++|++|+++|+|++.+|..|.||||+|+..|+.    +|+++|++.
T Consensus       276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~----~iv~lLl~~  323 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA----DIVTLLRLA  323 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCH----HHHHHHHHc
Confidence            999999999999999999999999999999999999996    888888753

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.1e-20  Score=151.09  Aligned_cols=93  Identities=33%  Similarity=0.411  Sum_probs=89.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643          276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS  355 (439)
Q Consensus       276 ~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~  355 (439)
                      +|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCC
Q 013643          356 SPAIKILLLYNVD  368 (439)
Q Consensus       356 ~~iV~~Ll~~gad  368 (439)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999975

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=4.9e-21  Score=158.89  Aligned_cols=109  Identities=28%  Similarity=0.293  Sum_probs=103.2

Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH
Q 013643          272 TATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAV  351 (439)
Q Consensus       272 ~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~  351 (439)
                      ..|..|+||||+||..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCccCCCCCCcHH
Q 013643          352 QTASSPAIKILLLYNVDINLQDNDGWTPL  380 (439)
Q Consensus       352 ~~g~~~iV~~Ll~~gadin~~d~~G~TpL  380 (439)
                      ..|+.+++++|+++|+++|.++..|.||-
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999999999873

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.76  E-value=1.9e-18  Score=142.67  Aligned_cols=90  Identities=30%  Similarity=0.492  Sum_probs=54.1

Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 013643          339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLY  418 (439)
Q Consensus       339 ~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~  418 (439)
                      .+.+|.|+||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+.
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~   99 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID   99 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence            34555566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCCcchHHHHHHHH
Q 013643          419 SGRDTRTFGMIKLL  432 (439)
Q Consensus       419 ~g~~~~~~eiik~L  432 (439)
                      .|+.    +++++|
T Consensus       100 ~~~~----~~~~~L  109 (110)
T 2zgd_A          100 NGNE----DLAEIL  109 (110)
T ss_dssp             HTCH----HHHHHH
T ss_pred             cCCH----HHHHHh
Confidence            6663    555554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=3.9e-18  Score=140.80  Aligned_cols=90  Identities=23%  Similarity=0.324  Sum_probs=61.0

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHH
Q 013643          306 VDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQ  385 (439)
Q Consensus       306 ~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~  385 (439)
                      .+.+|.|+||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~   99 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID   99 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence            45566666666666666666666666666666666667777777777777777777777777777666677777777777


Q ss_pred             cCCHHHHHHH
Q 013643          386 ARRTDIVKLL  395 (439)
Q Consensus       386 ~g~~eiv~~L  395 (439)
                      .|+.+++++|
T Consensus       100 ~~~~~~~~~L  109 (110)
T 2zgd_A          100 NGNEDLAEIL  109 (110)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHHHHHHh
Confidence            7777776665

>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1

Probab=98.41  E-value=9e-09  Score=104.01  Aligned_cols=72  Identities=17%  Similarity=0.175  Sum_probs=66.1

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL  169 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l  169 (439)
                      .+|+|+++||+||+|..|.+.+++        |++|||..|.|. ..|++|..+.+  .|+|+++||++       |+|.
T Consensus       326 ~~GiVleg~G~Gn~p~~~~~~l~~a~~~Gi~VV~~Sqc~~G~V~~~~Y~~g~~l~~--~GvI~~~dltp-------ekAr  396 (435)
T 2d6f_A          326 YRGIVIEGTGLGHCPDTLIPVIGEAHDMGVPVAMTSQCLNGRVNMNVYSTGRRLLQ--AGVIPCDDMLP-------EVAY  396 (435)
T ss_dssp             CSEEEEEEBTTTBCCGGGHHHHHHHHHTTCCEEEEETTCBSCCCTTSSHHHHHHHH--TTCEECTTCCH-------HHHH
T ss_pred             CCEEEEecCCCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCCccCcccchhhhHHhh--CCEEECCCCCH-------HHHH
Confidence            599999999999999988887766        899999999987 66999999999  99999999999       9999


Q ss_pred             hccCCCcccCCC
Q 013643          170 SQLNPPLVLDKP  181 (439)
Q Consensus       170 ~~l~p~~~l~~~  181 (439)
                      .+|+  ++|++.
T Consensus       397 ikLm--~~L~~~  406 (435)
T 2d6f_A          397 VKMC--WVLGQT  406 (435)
T ss_dssp             HHHH--HHTTTC
T ss_pred             HHHH--HHHhCC
Confidence            9999  999874

>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A

Probab=98.40  E-value=8.5e-09  Score=102.15  Aligned_cols=72  Identities=19%  Similarity=0.258  Sum_probs=60.5

Q ss_pred             CCcccccccccCCCch--hHHHHHHH--------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHh
Q 013643           99 GKQNVVQVEAENLVPD--KWKQVQEE--------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEA  167 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~--~~~~~~~~--------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~  167 (439)
                      .+|+|+++||+||+|.  .|.+.+++        |++|||..|.|. ..|++|..+.+  .|+|+++|||+       |+
T Consensus       254 ~~GiVle~~G~Gn~p~~~~~~~~l~~a~~~Gi~VV~~Src~~G~v~~~~Y~~g~~l~~--~GvI~~~dlt~-------ek  324 (358)
T 2him_A          254 VKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMSGKVNMGGYATGNALAH--AGVIGGADMTV-------EA  324 (358)
T ss_dssp             CSEEEEEEBTTTBCCCCHHHHHHHHHHHHTTCEEEEEESSSBCCCCCC-----CHHHH--TTCEECTTCCH-------HH
T ss_pred             CCEEEEecCCCCCCCCcHHHHHHHHHHHHCCCEEEEEcCCCCCCCCccchhhhhHHhh--CCEEECCCCCH-------HH
Confidence            5999999999999994  67776665        899999999987 77999999999  99999999999       99


Q ss_pred             hhhccCCCcccCCC
Q 013643          168 KLSQLNPPLVLDKP  181 (439)
Q Consensus       168 ~l~~l~p~~~l~~~  181 (439)
                      +..+|+  ++|.+.
T Consensus       325 Ar~kL~--~~L~~~  336 (358)
T 2him_A          325 TLTKLH--YLLSQE  336 (358)
T ss_dssp             HHHHHH--HHHHSS
T ss_pred             HHHHHH--HHHhCC
Confidence            999999  999874

>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1

Probab=98.40  E-value=8.3e-09  Score=104.37  Aligned_cols=72  Identities=17%  Similarity=0.128  Sum_probs=66.2

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL  169 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l  169 (439)
                      .+|+|+++||+||+|..|.+.+++        |++|||..|.|. ..|++|..+.+  .|+|+++||++       |+|.
T Consensus       329 ~~GiVleg~G~Gn~p~~~~~~l~~a~~~Gi~VV~~Sqc~~G~V~~~~Y~~g~~l~~--~GvI~~~dltp-------ekAr  399 (438)
T 1zq1_A          329 YKGIVIEGTGLGHTPNDIIPSIERAVEEGVAVCMTSQCIYGRVNLNVYSTGRKLLK--AGVIPCEDMLP-------ETAY  399 (438)
T ss_dssp             CSEEEEEEBTTTBCCGGGHHHHHHHHHTTCEEEEEESSSBSCCCCSSSHHHHHHHH--TTCEECTTCCH-------HHHH
T ss_pred             CCEEEEeeECCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCccCcccchhhhHHhh--CCEEECCCCCH-------HHHH
Confidence            599999999999999988887776        899999999987 66999999999  99999999999       9999


Q ss_pred             hccCCCcccCCC
Q 013643          170 SQLNPPLVLDKP  181 (439)
Q Consensus       170 ~~l~p~~~l~~~  181 (439)
                      .+|+  ++|++.
T Consensus       400 ikLm--~~L~~~  409 (438)
T 1zq1_A          400 VKLM--WVLGHT  409 (438)
T ss_dssp             HHHH--HHHTTC
T ss_pred             HHHH--HHHhCC
Confidence            9999  999874

>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A

Probab=98.39  E-value=9.6e-09  Score=100.72  Aligned_cols=72  Identities=15%  Similarity=0.185  Sum_probs=66.0

Q ss_pred             CCcccccccccCCCc---hhHHHHHHH-------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHh
Q 013643           99 GKQNVVQVEAENLVP---DKWKQVQEE-------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEA  167 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p---~~~~~~~~~-------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~  167 (439)
                      .+|+|+++||+||+|   ..|.+.+++       |++|||..|.|. ..|++|..+.+  .|+|+++|||+       |+
T Consensus       224 ~~GiVle~~G~Gn~p~~~~~~~~~l~~a~~~i~VV~~Sqc~~G~v~~~~Y~~g~~l~~--~Gvi~~~dlt~-------ek  294 (328)
T 1wls_A          224 YKGIILEGYGVGGIPYRGTDLFEVVSSISKRIPVVLTTQAIYDGVDLQRYKVGRIALE--AGVIPAGDMTK-------EA  294 (328)
T ss_dssp             CSEEEEEESSSCCCCCSSSSHHHHHHHHTTTSCEEEEESSSBSCCCTTTBHHHHHHHH--TTCEECTTCCH-------HH
T ss_pred             CCEEEEeeeCCCCCCCCcHHHHHHHHHHhcCCeEEEecCCCCCccCCccchhhhHHhh--CCEEECCCCCH-------HH
Confidence            599999999999999   778887766       899999999987 67999999999  99999999999       99


Q ss_pred             hhhccCCCcccCCC
Q 013643          168 KLSQLNPPLVLDKP  181 (439)
Q Consensus       168 ~l~~l~p~~~l~~~  181 (439)
                      +..+|+  ++|.+.
T Consensus       295 Ar~kL~--~~L~~~  306 (328)
T 1wls_A          295 TITKLM--WILGHT  306 (328)
T ss_dssp             HHHHHH--HHTTTC
T ss_pred             HHHHHH--HHHcCC
Confidence            999999  999875

>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1

Probab=98.28  E-value=2.1e-08  Score=98.53  Aligned_cols=70  Identities=10%  Similarity=0.067  Sum_probs=62.6

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHH-HHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKK-EKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL  169 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~-~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l  169 (439)
                      .+|+|+++||+||+|..|.+.+++        |++||| ..|.|...|+.+  +.+  .|+|+++||++       |++.
T Consensus       246 ~~GiVle~~G~Gn~p~~~~~~l~~a~~~Gi~VV~~Sr~~~~G~v~~~y~~~--~~~--~Gvi~~~dlt~-------ekAr  314 (337)
T 4pga_A          246 AKALIHAGTGNGSVSSRVVPALQQLRKNGTQIIRSSHVNQGGFVLRNAEQP--DDK--NDWVVAHDLNP-------EKAR  314 (337)
T ss_dssp             CSEEEEEEBTTTBCCTTTHHHHHHHHHTTCEEEEEESCCSBCCCCTTTSSC--HHH--HTCEECTTCCH-------HHHH
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEeccCCCCCccCcccccc--ccc--CCEEECCCCCH-------HHHH
Confidence            599999999999999988887777        899999 999988778776  445  89999999999       9999


Q ss_pred             hccCCCcccCCC
Q 013643          170 SQLNPPLVLDKP  181 (439)
Q Consensus       170 ~~l~p~~~l~~~  181 (439)
                      .+|+  ++|++.
T Consensus       315 ikL~--~~L~~~  324 (337)
T 4pga_A          315 ILAM--VAMTKT  324 (337)
T ss_dssp             HHHH--HHTTTC
T ss_pred             HHHH--HHHhCC
Confidence            9999  999875

>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*

Probab=98.24  E-value=3e-08  Score=97.15  Aligned_cols=70  Identities=10%  Similarity=0.019  Sum_probs=62.5

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLS  170 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l~  170 (439)
                      .+|+|+++||+||+|.+|.+.+++        |++|||..|.|...  .|..+.+  .|+|+++||++       |++..
T Consensus       236 ~~GiVl~~~G~Gn~p~~~~~~l~~a~~~gi~VV~~Sr~~~G~v~~~--~g~~l~~--~Gvi~~~dlt~-------ekAr~  304 (326)
T 1nns_A          236 YDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQD--AEVDDAK--YGFVASGTLNP-------QKARV  304 (326)
T ss_dssp             CSEEEEEEBTTTBCCHHHHHHHHHHHHTTCEEEEEESSSSSCBCSS--SSSCHHH--HTEEECBTCCH-------HHHHH
T ss_pred             CCEEEEeeECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCcCCC--hhhHHhc--CCEEECCCCCH-------HHHHH
Confidence            599999999999999988887776        89999999988643  7778888  99999999999       99999


Q ss_pred             ccCCCcccCCC
Q 013643          171 QLNPPLVLDKP  181 (439)
Q Consensus       171 ~l~p~~~l~~~  181 (439)
                      +|+  ++|.+.
T Consensus       305 kL~--~~L~~~  313 (326)
T 1nns_A          305 LLQ--LALTQT  313 (326)
T ss_dssp             HHH--HHTTTC
T ss_pred             HHH--HHHhCC
Confidence            999  999874

>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1

Probab=98.20  E-value=3.7e-08  Score=96.71  Aligned_cols=70  Identities=14%  Similarity=0.052  Sum_probs=62.3

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLS  170 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l~  170 (439)
                      .+|+|+++||+||+|..|.+.+++        |++|||..|.|...  .|..+.+  .|+|+++|||+       |++..
T Consensus       240 ~~GiVle~~G~Gn~p~~~~~~l~~a~~~gi~VV~~Sr~~~G~v~~~--~g~~l~~--~Gvi~~~dlt~-------ekAr~  308 (330)
T 1wsa_A          240 AKGIIHAGMGNGNPFPLTQNALEKAAKSGVVVARSSRVGSGSTTQE--AEVDDKK--LGFVATESLNP-------QKARV  308 (330)
T ss_dssp             CSEEEEEEBTTTBCCHHHHHHHHHHHHTTCEEEEEESSSSSCBCSS--SSSCHHH--HTEEECBSCCH-------HHHHH
T ss_pred             CCEEEEeeECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCcCcc--hhhHHhc--CCEEECCCCCH-------HHHHH
Confidence            599999999999999888887766        89999999988633  7777888  99999999999       99999


Q ss_pred             ccCCCcccCCC
Q 013643          171 QLNPPLVLDKP  181 (439)
Q Consensus       171 ~l~p~~~l~~~  181 (439)
                      +|+  ++|.+.
T Consensus       309 kL~--~~L~~~  317 (330)
T 1wsa_A          309 LLM--LALTKT  317 (330)
T ss_dssp             HHH--HHHTTC
T ss_pred             HHH--HHHhCC
Confidence            999  999874

>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}

Probab=98.15  E-value=9.9e-08  Score=93.50  Aligned_cols=68  Identities=22%  Similarity=0.213  Sum_probs=59.3

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLS  170 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l~  170 (439)
                      .+|+|+++||+||+|.+|.+.+++        |++|||..|.|.    .+..+.+  .|+|+++||++       |++..
T Consensus       246 ~~GiVle~~G~Gn~p~~~~~~l~~a~~~Gi~VV~~Src~~G~V~----~~~~l~~--~Gvi~~~dlt~-------ekAri  312 (334)
T 3nxk_A          246 TKGIVVAGSGAGSIHKNQKDVLKELLKKGLKVVVSSRVVAGCVA----VSDSDEK--LGFISAEDLNP-------QKARV  312 (334)
T ss_dssp             CCEEEEEEBTTTBCCHHHHHHHHHHHTTTCEEEEEESSSBSCCC----CCHHHHH--HTEEECTTCCH-------HHHHH
T ss_pred             CCEEEEeeECCCCCcHHHHHHHHHHHHCCCEEEEeCCCCCCccC----ccccccc--CCEEECCCCCH-------HHHHH
Confidence            599999999999999988887777        899999999882    2344555  99999999999       99999


Q ss_pred             ccCCCcccCCC
Q 013643          171 QLNPPLVLDKP  181 (439)
Q Consensus       171 ~l~p~~~l~~~  181 (439)
                      +|+  ++|.+.
T Consensus       313 kL~--~~L~~~  321 (334)
T 3nxk_A          313 LLM--LALTKT  321 (334)
T ss_dssp             HHH--HHTTTC
T ss_pred             HHH--HHHhCC
Confidence            999  999875

>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1

Probab=98.10  E-value=1.1e-07  Score=93.45  Aligned_cols=70  Identities=10%  Similarity=0.084  Sum_probs=61.4

Q ss_pred             CCcccccccccCCCchhHHHHHHH---------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE---------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL  169 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~---------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l  169 (439)
                      .+|+|+++||.||+|..|.+.+++         |++|||..|.|...  .|..+.+  .|+|+++||++       |++.
T Consensus       240 ~~GiVle~~G~Gn~p~~~~~~l~~a~~~~gi~VV~~Sr~~~G~v~~~--~g~~l~~--~Gvi~~~dlt~-------ekAr  308 (331)
T 1agx_A          240 VKAIIHAGTGNGSMANYLVPEVRKLHDEQGLQIVRSSRVAQGFVLRN--AEQPDDK--YGWIAAHDLNP-------QKAR  308 (331)
T ss_dssp             CSEEEEEEBTTTBCCTTHHHHHHHHHHTTCCEEEEEESSCSSCBCTT--TSSCHHH--HTCEECBTCCH-------HHHH
T ss_pred             CCEEEEeeECCCCCCHHHHHHHHHHHHcCCCEEEEECCCCCCCcCcc--hhhHHhh--CCEEECCCCCH-------HHHH
Confidence            599999999999999888776554         78999999988633  7778888  99999999999       9999


Q ss_pred             hccCCCcccCCC
Q 013643          170 SQLNPPLVLDKP  181 (439)
Q Consensus       170 ~~l~p~~~l~~~  181 (439)
                      .+|+  ++|.+.
T Consensus       309 ~kL~--~~L~~~  318 (331)
T 1agx_A          309 LLMA--LALTKT  318 (331)
T ss_dssp             HHHH--HHTTTC
T ss_pred             HHHH--HHHhCC
Confidence            9999  999874

>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A

Probab=98.02  E-value=1.1e-07  Score=93.24  Aligned_cols=69  Identities=14%  Similarity=0.174  Sum_probs=59.9

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLS  170 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l~  170 (439)
                      .+|+|+++||.||+|..|.+.+++        |++|||..|.|...   |..+.+  .|+|+++||++       |++..
T Consensus       243 ~~GiVle~~G~Gn~p~~~~~~l~~a~~~Gi~VV~~Sr~~~G~v~~~---g~~l~~--~Gvi~~~dlt~-------ekAr~  310 (332)
T 2wlt_A          243 AKGVVIAGVGNGNVSAGFLKAMQEASQMGVVIVRSSRVGSGGVTSG---EIDDKA--YGFITSDNLNP-------QKARV  310 (332)
T ss_dssp             CSEEEEEEBTTTBCCHHHHHHHHHHHHTTCEEEEEESSSSSCCCSS---SSCHHH--HTCEECTTCCH-------HHHHH
T ss_pred             CCEEEEeeECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCcCcc---hhhhhc--CCEEECCCCCH-------HHHHH
Confidence            599999999999999888887766        89999999988632   336777  99999999999       99999


Q ss_pred             ccCCCcccCCC
Q 013643          171 QLNPPLVLDKP  181 (439)
Q Consensus       171 ~l~p~~~l~~~  181 (439)
                      +|+  ++|.+.
T Consensus       311 kL~--~~L~~~  319 (332)
T 2wlt_A          311 LLQ--LALTKT  319 (332)
T ss_dssp             HHH--HHHHHC
T ss_pred             HHH--HHHhCC
Confidence            999  998874

>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A

Probab=97.58  E-value=2.1e-06  Score=84.04  Aligned_cols=65  Identities=17%  Similarity=0.073  Sum_probs=55.2

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLS  170 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l~  170 (439)
                      .+|+|+++||.||+|..|.+.+++        |++|||..|.|...   | .+    .| |+++||++       |++..
T Consensus       242 ~~GiVle~~G~Gn~p~~~~~~l~~a~~~Gi~VV~~Sr~~~G~v~~~---g-~l----~~-i~~~dlt~-------ekAr~  305 (327)
T 1o7j_A          242 VKGIVYAGMGAGSVSVRGIAGMRKALEKGVVVMRSTRTGNGIVPPD---E-EL----PG-LVSDSLNP-------AHARI  305 (327)
T ss_dssp             CSEEEEEEBTTTBCCHHHHHHHHHHHHTTCEEEEEESSSBSCBCCC---T-TS----SS-EECBTCCH-------HHHHH
T ss_pred             CCEEEEeeECCCCCCHHHHHHHHHHHHCCceEEEECCCCCCCcCCC---c-cc----cc-ccCCCCCH-------HHHHH
Confidence            599999999999999888887766        89999999988532   3 22    35 99999999       99999


Q ss_pred             ccCCCcccCCC
Q 013643          171 QLNPPLVLDKP  181 (439)
Q Consensus       171 ~l~p~~~l~~~  181 (439)
                      +|+  ++|.+.
T Consensus       306 kL~--~~L~~~  314 (327)
T 1o7j_A          306 LLM--LALTRT  314 (327)
T ss_dssp             HHH--HHTTTC
T ss_pred             HHH--HHHhCC
Confidence            999  999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	439
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-29
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-26
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-24
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-23
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-22
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-18
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-18
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-18
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-15
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	8e-15
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-12
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-12
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-09
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-07
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 2e-29
 Identities = 61/219 (27%), Positives = 83/219 (37%), Gaps = 8/219 (3%)

Query: 221 WAVYGRGLDDVSEFFNSG-NYDPPDKKSDGP---RRKLFTKEEKVLLNKKLPHLATATSK 276
            AV+   LD V      G +   P      P     K    E    L +        + +
Sbjct: 171 VAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 230

Query: 277 KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
              PLH  A  G    V  LL    + N  +K GLT LH         V + L++     
Sbjct: 231 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 290

Query: 337 FVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
                 G T LH A    +   +K LL +  D+N +   G++PLH A Q   TDIV LLL
Sbjct: 291 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 350

Query: 397 IKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435
             GA     + DG TPL +    G       +  +LK +
Sbjct: 351 KNGASPNEVSSDGTTPLAIAKRLGYI----SVTDVLKVV 385

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 6e-26
 Identities = 41/175 (23%), Positives = 63/175 (36%), Gaps = 33/175 (18%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
           PLH  +  G    V  LL+     N  +    T LH A       V  YLL+  A     
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDI------------------------------ 369
            +D  T LH A +   +  +K+LL  N +                               
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 370 ---NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGR 421
                    G+TPLH+A +  +  + +LLL + A      ++GLTPL + ++   
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNN 177

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 1e-24
 Identities = 48/190 (25%), Positives = 69/190 (36%), Gaps = 33/190 (17%)

Query: 274 TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRES 333
             K   PLH  A +G       LL++   +NA  KD  T LH A       +   LL  +
Sbjct: 30  NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 89

Query: 334 ANPF---------------------------------VVDEDGATLLHYAVQTASSPAIK 360
           ANP                                   + + G T LH A +       +
Sbjct: 90  ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE 149

Query: 361 ILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG 420
           +LL  +   N    +G TPLH+AV     DIVKLLL +G        +G TPL +     
Sbjct: 150 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 209

Query: 421 RDTRTFGMIK 430
           +      +++
Sbjct: 210 QVEVARSLLQ 219

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 1e-21
 Identities = 43/159 (27%), Positives = 61/159 (38%)

Query: 262 LLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGK 321
           LL ++  H   A      PLH          V  LL      ++   +G T LH A    
Sbjct: 150 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 209

Query: 322 KQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLH 381
           +  V   LL+   +       G T LH A Q   +  + +LL    + NL +  G TPLH
Sbjct: 210 QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH 269

Query: 382 LAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG 420
           L  Q     +  +L+  G       R G TPL +  + G
Sbjct: 270 LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG 308

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (228), Expect = 5e-21
 Identities = 54/153 (35%), Positives = 71/153 (46%)

Query: 269 HLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNY 328
             A  T K + PLH  A  G+    + LL+ +   NA  K+GLT LH A+      +   
Sbjct: 124 SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 183

Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
           LL    +P     +G T LH A +       + LL Y    N +   G TPLHLA Q   
Sbjct: 184 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH 243

Query: 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGR 421
            ++V LLL K A+  L N+ GLTPL L    G 
Sbjct: 244 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH 276

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (218), Expect = 9e-20
 Identities = 35/102 (34%), Positives = 47/102 (46%)

Query: 311 LTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDIN 370
           LT LH A       +   LL+  A+P V +    T LH A +   +   K LL     +N
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 371 LQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTP 412
            +  D  TPLH A +   T++VKLLL   A+  L    G TP
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 102

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (217), Expect = 1e-19
 Identities = 26/77 (33%), Positives = 34/77 (44%)

Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
           T LH A      P +K LL      N+ +    TPLH+A +A  T++ K LL   A    
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 405 KNRDGLTPLDLCLYSGR 421
           K +D  TPL      G 
Sbjct: 62  KAKDDQTPLHCAARIGH 78

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 3e-16
 Identities = 49/164 (29%), Positives = 72/164 (43%)

Query: 257 KEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHK 316
                LL +   +   AT+    PLH  A  G    V ALL+       + K G T LH 
Sbjct: 79  TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV 138

Query: 317 AIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDG 376
           A    K  V   LL   A+P    ++G T LH AV   +   +K+LL      +    +G
Sbjct: 139 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 198

Query: 377 WTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG 420
           +TPLH+A +  + ++ + LL  G     ++  G+TPL L    G
Sbjct: 199 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG 242

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (261), Expect = 4e-26
 Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 6/135 (4%)

Query: 278 WLPLHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQ----AVTNYLLRE 332
              L   A  G    +  LL     D+NA D  G  AL  A++        A+T+ LL  
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 333 SANPFVVDEDGATLLHYAVQTASSPAIKILLL-YNVDINLQDNDGWTPLHLAVQARRTDI 391
            A+  V  E G T L  AV+      ++ LL   +++IN  D+DG T L LAV+ +   I
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268

Query: 392 VKLLLIKGADKTLKN 406
            +LL  +GA     +
Sbjct: 269 AELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 2e-21
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 10/140 (7%)

Query: 299 HNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRES-ANPFVVDEDGATLLHYAVQTASSP 357
              D   + K G TAL  A       V   LL E  A+    D  G   L +A+ ++   
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

Query: 358 AI----KILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK-GADKTLKNRDGLTP 412
            +     +LL +  D+N++   G TPL LAV+ +   +V+ LL +   +    + DG T 
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256

Query: 413 LDLCLYSGRDTRTFGMIKLL 432
           L L +          + +LL
Sbjct: 257 LLLAVELKLKK----IAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 1e-13
 Identities = 41/198 (20%), Positives = 67/198 (33%), Gaps = 45/198 (22%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKD-GLTALHKAIIGKKQAVTNYLLRESANP-- 336
            L     + +   V  LL+   ++N  +++ G T LH A+   ++ +   LLR  A+P  
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 337 -------------------------------FVVDEDGATLLHYAVQTASSPAIKILLLY 365
                                             D  G T    A       A+K L   
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127

Query: 366 NVDINLQD----------NDGWTPLHLAVQARRTDIVKLLLIK-GADKTLKNRDGLTPLD 414
             ++NL+             G T L  A +    +++K+LL + GAD    +  G   L 
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187

Query: 415 LCLYSGRDTRTFGMIKLL 432
             L S  D+    +  LL
Sbjct: 188 HALLSSDDSDVEAITHLL 205

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 9e-11
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 342 DGATLLHYAVQTASSPAIKILLLYNVDINLQDND-GWTPLHLAVQARRTDIVKLLL 396
           +   LL  AVQ      ++ LL    ++N Q+ + GWTPLH AVQ  R DIV+LLL
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 3e-06
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 371 LQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLK-NRDGLTPLDLCLYSGR 421
           ++DN     L  AVQ    D+V+ LL  GA+   +    G TPL   +   R
Sbjct: 3   VEDN---HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR 51

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 8e-06
 Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 3/127 (2%)

Query: 305 AVDKDGLTALHKAIIGKKQAVTNYLLRESANP-FVVDEDGATLLHYAVQTASSPAIKILL 363
           AV+ +    L KA+  +   +   LL   AN  F  +E G T LH AVQ +    +++LL
Sbjct: 2   AVEDN--HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 364 LYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDT 423
            +  D  L+  +G TP  LA  A    ++KL L KGAD    +  G T        G+  
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 424 RTFGMIK 430
               + K
Sbjct: 120 ALKFLYK 126

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 1e-24
 Identities = 53/138 (38%), Positives = 73/138 (52%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           W PLH  A++G    V ALL     +NAV+++G T LH A    +  +   LL   ANP 
Sbjct: 71  WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 130

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
             D   AT +H A    +   I ILL Y    N+QD +G TPLHLA    R +  KLL+ 
Sbjct: 131 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 190

Query: 398 KGADKTLKNRDGLTPLDL 415
           +GA   ++N++  TPL +
Sbjct: 191 QGASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.0 bits (235), Expect = 4e-23
 Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 1/135 (0%)

Query: 262 LLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGK 321
            L  K   +         PLH  A+         LL+   + +A D    TA+H+A    
Sbjct: 88  ALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 147

Query: 322 KQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLH 381
              + + LL   A+  + D +G T LH A         K+L+     I +++ +  TPL 
Sbjct: 148 NLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQ 207

Query: 382 LAVQARRTDIVKLLL 396
           +A +     I+K ++
Sbjct: 208 VA-KGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (229), Expect = 3e-22
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 1/143 (0%)

Query: 279 LPLHSLAASGEFYFV-DALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
           L + +LA SG+   + +++L         D+D  TALH A       +  +LL+      
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
             D+ G + LH A        +K LL     +N  + +G TPLH A    R +I  +LL 
Sbjct: 65  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 124

Query: 398 KGADKTLKNRDGLTPLDLCLYSG 420
            GA+   K+    T +      G
Sbjct: 125 GGANPDAKDHYEATAMHRAAAKG 147

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.9 bits (211), Expect = 3e-19
 Identities = 35/188 (18%), Positives = 59/188 (31%), Gaps = 53/188 (28%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINA---------------------------------- 305
           PLH L +      V  L+KH  +                                     
Sbjct: 110 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 169

Query: 306 ---VDKDGLTALHKAIIGKK------------QAVTNYLLRESANPFV-VDEDGATLLHY 349
               D    T LH  II                 +  +++++   P      +  +  + 
Sbjct: 170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 229

Query: 350 AVQTASSPAIKILL---LYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKN 406
                    ++ L    +    +N QD++G T L++A +     IV  LL  GAD  + N
Sbjct: 230 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN 289

Query: 407 RDGLTPLD 414
           + GL P+D
Sbjct: 290 KSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.9 bits (172), Expect = 3e-14
 Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 3/119 (2%)

Query: 269 HLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNY 328
           H    TS       +     +      + K N  I +   +  +  +     +K ++   
Sbjct: 182 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN 241

Query: 329 LLRE---SANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAV 384
           L  +   +      D +G T L+ A +  +   +  LL Y  D  + +  G  P+    
Sbjct: 242 LDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.1 bits (152), Expect = 1e-11
 Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 2/157 (1%)

Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
           L S   S     + AL    V+ N         L + +  + Q +   L  +S+N     
Sbjct: 10  LTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEG 69

Query: 341 ED-GATLLHYAVQTASSPAIKILLLYNVDINLQ-DNDGWTPLHLAVQARRTDIVKLLLIK 398
                   H +  +             +++N+  D  G TPLH        ++VK L+  
Sbjct: 70  GSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH 129

Query: 399 GADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435
           G+++   +  G + L   + S  +  +     LL  L
Sbjct: 130 GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 166

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 83.2 bits (204), Expect = 1e-18
 Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 1/99 (1%)

Query: 299 HNVDINAVDKDGLTALHKAII-GKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSP 357
                ++    G TALH A        V   +  + +N    DEDG T +  A Q     
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 358 AIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
            +  L+     +   D    T   LA      +IV +  
Sbjct: 236 VVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.5 bits (176), Expect = 7e-15
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 335 NPFVVDEDGATLLHYAVQTASSPAIKILLLYN-VDINLQDNDGWTPLHLAVQARRTDIVK 393
                   G T LHYA Q ++ P +K L+     + + QD DG TP+ LA Q  R ++V 
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 394 LLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434
            L+ +GA     +    T   L   +        ++ +  +
Sbjct: 239 YLIQQGASVEAVDATDHTARQLAQANNHH----NIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.3 bits (147), Expect = 3e-11
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 10/81 (12%)

Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQD-NDGWTPLHLAVQARRTDIVKLLLI------ 397
           + +    + A S AI   +     +N+ D     T LH        +  + L++      
Sbjct: 2   SPIKLHTEAAGSYAITEPIT-RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 398 --KGADKTLKNRDGLTPLDLC 416
              GAD    + D  TPL L 
Sbjct: 61  IAAGADVNAMDCDENTPLMLA 81

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 12/58 (20%), Positives = 18/58 (31%)

Query: 274 TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLR 331
                 P+   A  G    V  L++    + AVD    TA   A       + +   R
Sbjct: 218 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.5 bits (132), Expect = 2e-09
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 27/103 (26%)

Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
           + LH+  A+G +   + + + +V+I    +   T LH          +  L+   A    
Sbjct: 4   IKLHT-EAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEA---- 57

Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLH 381
                                K  +    D+N  D D  TPL 
Sbjct: 58  ---------------------KECIAAGADVNAMDCDENTPLM 79

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 6/44 (13%), Positives = 16/44 (36%)

Query: 378 TPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGR 421
           +P+ L  +A  +  +   + + +   +  R   T L     +  
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSS 45

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 79.8 bits (195), Expect = 7e-18
 Identities = 34/100 (34%), Positives = 44/100 (44%)

Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355
           L+  + DINA D  G TALH A         N LL   AN    D+   T L  A +  S
Sbjct: 109 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGS 168

Query: 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
             A K LL    +  + D+    P  +A +    DIV+LL
Sbjct: 169 YEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 65.2 bits (157), Expect = 7e-13
 Identities = 39/208 (18%), Positives = 61/208 (29%), Gaps = 72/208 (34%)

Query: 293 VDALLKHNVDINA-VDKDGLTALHKAIIGKKQAVTNYLLRE------------------- 332
           +  LL    ++NA +DK G T+LH A    +      LL                     
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 333 ---------------SANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGW 377
                          + N      DG T L  A + A    ++ L+  + DIN  DN G 
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 124

Query: 378 TP---------------------------------LHLAVQARRTDIVKLLLIKGADKTL 404
           T                                  L LA +    +  K LL   A++ +
Sbjct: 125 TALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREI 184

Query: 405 KNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
            +     P D+            +++LL
Sbjct: 185 TDHMDRLPRDVASERLH----HDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.6 bits (119), Expect = 8e-08
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 355 SSPAIKILLLYNVDINL-QDNDGWTPLHLAVQARRTDIVKLL 395
           ++  I  LL    ++N   D  G T LHLA +  R D  K L
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 22/100 (22%), Positives = 34/100 (34%)

Query: 263 LNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKK 322
           L      +  A +     LH  AA      V+ LL H+ + +A D    T L  A     
Sbjct: 109 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGS 168

Query: 323 QAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKIL 362
              +  LL   AN  + D         A +      +++L
Sbjct: 169 YEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 80.9 bits (198), Expect = 9e-18
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355
           L   +++     K G TALH A       V   L++   +  + D DG T LH A     
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244

Query: 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKN 406
             A +IL+    D+   +  G T   +A +    DI+  L      + L +
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 80.1 bits (196), Expect = 2e-17
 Identities = 24/77 (31%), Positives = 39/77 (50%)

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
            + G T LH A     +  +K+L+    D+N++D DGWTPLH A    + +  ++L+   
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 400 ADKTLKNRDGLTPLDLC 416
            D    N+ G T  D+ 
Sbjct: 256 CDMEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.7 bits (148), Expect = 3e-11
 Identities = 23/90 (25%), Positives = 34/90 (37%)

Query: 263 LNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKK 322
           LN    +           LH  AA G    +  L++   D+N  D DG T LH A    K
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244

Query: 323 QAVTNYLLRESANPFVVDEDGATLLHYAVQ 352
           +     L+    +   V++ G T    A +
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.6 bits (114), Expect = 6e-07
 Identities = 15/49 (30%), Positives = 18/49 (36%)

Query: 373 DNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGR 421
             D       A  +  T+ V  LL +GAD    N DGLT L        
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN 85

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.2 bits (113), Expect = 7e-07
 Identities = 17/56 (30%), Positives = 23/56 (41%)

Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
           V  D   +   A  +  +  +  LL    DIN  + DG T LH A      D+VK 
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF 91

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.5 bits (106), Expect = 6e-06
 Identities = 31/114 (27%), Positives = 53/114 (46%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
              +  +SG+   V  LL+   DIN  + DGLTALH+A I     +  +L+   AN    
Sbjct: 43  VFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP 102

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVK 393
           D +G   LH A         + L+     +   +++G TPL +A +    ++++
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 348 HYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNR 407
               +     A + L   +++       G T LH+A     T+++KLL+    D  +K+ 
Sbjct: 171 KEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230

Query: 408 DGLTPLDLCLYSGRDTRTFGMIKLL 432
           DG TPL    + G+        ++L
Sbjct: 231 DGWTPLHAAAHWGK----EEACRIL 251

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 35/111 (31%), Positives = 47/111 (42%)

Query: 306 VDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLY 365
           V  D       A           LL   A+    + DG T LH A    +   +K L+  
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

Query: 366 NVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLC 416
             +IN  DN+GW PLH A      DI + L+ +GA     N +G TPLD+ 
Sbjct: 96  GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA 146

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 81.5 bits (200), Expect = 1e-17
 Identities = 19/169 (11%), Positives = 41/169 (24%), Gaps = 27/169 (15%)

Query: 253 KLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLT 312
            L+    +  ++     L T + K+ + +              L  +    N   K   +
Sbjct: 22  ILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWS 81

Query: 313 ALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKI---LLLYNVDI 369
             HK                             +   A  T  S A+     LL  +  +
Sbjct: 82  DAHKK----------------------GIKSEVICFVAAITGCSSALDTLCLLLTSDEIV 119

Query: 370 NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRD--GLTPLDLC 416
            +   + +    LA +     ++  L      + +            L 
Sbjct: 120 KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA 168

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 60.3 bits (145), Expect = 1e-10
 Identities = 27/202 (13%), Positives = 45/202 (22%), Gaps = 29/202 (14%)

Query: 260 KVLLNKKLPHLAT-ATSKKWLPLHSLAASGEFYFVDALLKHNVDINAV---DKDGLTALH 315
             L       +     ++ +      A +G  + ++ L +            ++      
Sbjct: 143 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW 202

Query: 316 KAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAV------QTASSPAIKILLLY---- 365
            A+      V N+LL         +          V             +          
Sbjct: 203 AAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPD 262

Query: 366 ------NVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNR-----DGLTPLD 414
                      LQ       L         D ++ LL     K L        D    L 
Sbjct: 263 GVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR 322

Query: 415 LCLYSGRDTRTFGMIKLLKQLP 436
           L L  G      G   LL  +P
Sbjct: 323 LALRLGN----QGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.5 bits (117), Expect = 3e-07
 Identities = 16/137 (11%), Positives = 37/137 (27%), Gaps = 16/137 (11%)

Query: 300 NVDINAVDKDGLTALHKAI--IGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSP 357
           N+ I+ ++        + I  I  +    +++     +   +    A  +          
Sbjct: 1   NLTIHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQ 60

Query: 358 AIKILLLYNVDINL-----------QDNDGWTPLHLAVQ---ARRTDIVKLLLIKGADKT 403
             ++L LY    N            +         +A     +   D + LLL       
Sbjct: 61  VRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK 120

Query: 404 LKNRDGLTPLDLCLYSG 420
           +   +      L   +G
Sbjct: 121 VIQAENYQAFRLAAENG 137

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (191), Expect = 5e-17
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 4/140 (2%)

Query: 271 ATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLL 330
            T  +           + E           + + A + DG T LH A+I K   +   L 
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR 178

Query: 331 RESANPFVVDEDGA-TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRT 389
              A+    +     T LH AV+  ++  +++LL    D   +   G TPL  A+     
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP 238

Query: 390 DIVKLLLIKGADKTLKNRDG 409
            + +LL   GA    +  DG
Sbjct: 239 ILARLLRAHGAP---EPEDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (174), Expect = 8e-15
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 3/113 (2%)

Query: 303 INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV---DEDGATLLHYAVQTASSPAI 359
              V +DG TALH A+I + +   ++LL  SA    +   ++ G T LH A     +  +
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 360 KILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTP 412
           + L      + + +  G T LHLA + R      +LL           D    
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.6 bits (153), Expect = 5e-12
 Identities = 40/239 (16%), Positives = 63/239 (26%), Gaps = 88/239 (36%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVD---INAVDKDGLTAL-------------------- 314
              LH         F+D LL  +     ++  +  G TAL                    
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 315 -------------HKAIIGKKQAVTNYLLRESANPFVVDEDG--------------ATLL 347
                        H A   +       LL+   +      D               A   
Sbjct: 70  GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 348 HYAVQTASSPAIKILLLYNVDINLQDNDG------------------------------- 376
             +     +        + + +  ++ DG                               
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

Query: 377 ---WTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432
               TPLHLAV+A+   +++LLL  GAD T +   G TPL   L          + +LL
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP----ILARLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 4e-11
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 373 DNDGWTPLHLAVQARRTDIVKLLLIKGADKTL---KNRDGLTPLDLCLYSGRDTRTFGMI 429
             DG T LHLAV  +    +  LL   A       +N  G T L L    G  +    + 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 430 K 430
            
Sbjct: 66  A 66

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.6 bits (169), Expect = 8e-15
 Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 12/136 (8%)

Query: 280 PLHSL---AASGEFYFVDALLKHNVDINA------VDKDGLTALHKAIIGKKQA---VTN 327
            LHSL     + + + +       VD+          +   TALH A+    +    + +
Sbjct: 6   KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVD 65

Query: 328 YLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQAR 387
           +L++ S N       G+T LHY   T ++  +K+LL     I + +  G TPL +A + +
Sbjct: 66  FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLK 125

Query: 388 RTDIVKLLLIKGADKT 403
                +LL    + + 
Sbjct: 126 HEHCEELLTQALSGRF 141

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 3e-07
 Identities = 27/138 (19%), Positives = 39/138 (28%), Gaps = 49/138 (35%)

Query: 342 DGATLLHY---AVQTASSPAIKILLLYNVDINLQ------DNDGWTPLHLAVQAR---RT 389
           D A  LH    AV+T     +       VD+  +           T LHLAV++      
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 390 DIVKLLLIKGAD---------------------------------KTLKNRDGLTPLDLC 416
            IV  L+    +                                   + N  G TPLD+ 
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 417 LYSGRDTRTFGMIKLLKQ 434
                +       +LL Q
Sbjct: 122 KRLKHE----HCEELLTQ 135

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.6 bits (171), Expect = 1e-14
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLL-RESANPFVVDEDGATLLHYAVQTA 354
           L+++   +   DK     LH+A       +   L     +     D+ G T L +A+   
Sbjct: 124 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 183

Query: 355 SSPAIKILLL-YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD 401
              A  +L+  Y  + +L DN G     +A+      + K  L    D
Sbjct: 184 HGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.8 bits (143), Expect = 6e-11
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 327 NYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD-INLQDNDGWTPLHLAVQ 385
            +L+   A+  + D+     LH A    S   I++L       +N QD  GWTPL  A+ 
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 181

Query: 386 ARRTDIVKLLLIK-GADKTLKNRDGLTPLDLCL 417
               D   LL+ K GA+  L +  G    D+ L
Sbjct: 182 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 214

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 7e-08
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 378 TPLHLAVQARRTDIVKLLLI-KGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIK 430
            PLH A        V+ LL  K +    K++DG  PL   +       T  ++ 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 55

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 347 LHYAVQTASSPAIKILLLYN-VDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
           LH A        ++ LL      +  +D DG  PLH +V  +  +I   LL K 
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 6e-05
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 312 TALHKAII-GKKQAVTNYLLRESANPFVVDEDGATLLHYAVQ 352
             LH+A +  +   V   L  + +     D+DG   LH++V 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS 43

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (166), Expect = 6e-14
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 1/117 (0%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDK-DGLTALHKAIIGKKQAVTNYLLRESANP 336
              LH    +     V  LL+   DI+AVD   G + L  A+     ++   LL+  AN 
Sbjct: 111 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 170

Query: 337 FVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVK 393
                 G++ LH A      P ++ L+    D +L++    TPL +A   R  DI++
Sbjct: 171 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 2e-12
 Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 1/133 (0%)

Query: 290 FYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDE-DGATLLH 348
              +D+     +D+ A + DGLTALH A+  + Q     LL   A+   VD   G + L 
Sbjct: 90  RALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI 149

Query: 349 YAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRD 408
           +AV+  S   +++LL +  ++N Q   G + LH A       +V+ L+  GAD +LKN  
Sbjct: 150 HAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCH 209

Query: 409 GLTPLDLCLYSGR 421
             TPL +      
Sbjct: 210 NDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 5e-10
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 341 EDGATLLHYAVQTASSPAIKILLLY----NVDINLQDNDGWTPLHLAVQ 385
           EDG T LH AV   + PA+  L+        ++++ +N   TPLHLAV 
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 49

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 3e-09
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 375 DGWTPLHLAVQARRTDIVKLLL----IKGADKTLKNRDGLTPLDLC 416
           DG TPLH+AV       V  L+      G +  + N    TPL L 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 4/128 (3%)

Query: 309 DGLTALHKAIIGKKQAVTNYLLRES----ANPFVVDEDGATLLHYAVQTASSPAIKILLL 364
           DG T LH A++       + L+           + +    T LH AV T     +++L+ 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 365 YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTR 424
                   D  G T  HLA + R    ++ LL   A  TL            L+   +T 
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 425 TFGMIKLL 432
               ++LL
Sbjct: 122 CQETVQLL 129

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 22/93 (23%), Positives = 35/93 (37%)

Query: 260 KVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAII 319
           ++LL +     A        PL     +     V  LL+H  ++NA    G +ALH A  
Sbjct: 127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG 186

Query: 320 GKKQAVTNYLLRESANPFVVDEDGATLLHYAVQ 352
                +   L+R  A+  + +    T L  A  
Sbjct: 187 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 219

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 2e-12
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 320 GKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTP 379
           G    V   +   +        +G T LH AV   +   + +LL    D+N     G++P
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 181

Query: 380 LHLAVQARRTDIVKLLLIKGAD--KTLKNRDGLTPLD 414
             L      T I + L     +  + L   +     D
Sbjct: 182 YQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 218

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 1e-08
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 342 DGATLLHYAVQTASSPA----IKILLLYNVDINLQDNDGWTPLHLAVQ 385
           DG + LH A+           I+ +      +N Q+N   TPLHLAV 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 48

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 5e-08
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 372 QDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKL 431
           +  +G T LHLAV  +  D+V LLL  GAD       G +P  L            + + 
Sbjct: 141 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR----IQQQ 196

Query: 432 LKQL 435
           L QL
Sbjct: 197 LGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 7e-08
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 375 DGWTPLHLAVQARRTD----IVKLLLIKGADKTLKNRDGLTPL 413
           DG + LHLA+          +++ +    A    +N    TPL
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPL 43

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 11/65 (16%), Positives = 18/65 (27%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
              LH          V  LLK   D+N V   G +            +   L + +    
Sbjct: 146 RTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 205

Query: 338 VVDED 342
            +  +
Sbjct: 206 QMLPE 210

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 13/67 (19%), Positives = 26/67 (38%)

Query: 309 DGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD 368
           +G TALH A+  +   + + LL+  A+   V   G +         S+   + L    ++
Sbjct: 144 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

Query: 369 INLQDND 375
                 +
Sbjct: 204 NLQMLPE 210

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 4e-12
 Identities = 35/150 (23%), Positives = 54/150 (36%), Gaps = 34/150 (22%)

Query: 280 PLHSLAASGEFYFVDALL-KHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
            L   AA G+   V  LL +  V  +A+++ G TAL   + G        L + ++    
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 339 --------------------------------VDEDGATLLHYAVQTASSPAIKILLLYN 366
                                            D  GA  +H AVQ   +  +  L    
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AE 123

Query: 367 VDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
            D++ +D  G TPL LA+Q    D+V +L 
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 4e-05
 Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 39/160 (24%)

Query: 308 KDGLTALHKAII-GKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKI----- 361
           + G   L  A   G  Q V   L RE  +P  ++  G T L   +  +++ A+++     
Sbjct: 1   RAG-DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 59

Query: 362 ---------------------------LLLYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
                                      L+ +  D+N+ D  G  P+HLAVQ   T +V  
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS- 118

Query: 395 LLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434
            L   +D   ++  GLTPL+L L  G       ++ +L+ 
Sbjct: 119 FLAAESDLHRRDARGLTPLELALQRGA----QDLVDILQG 154

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.4 bits (147), Expect = 6e-12
 Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 32/148 (21%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDK------------------------------- 308
            L   A +G+   V  L+ +                                        
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 309 -DGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNV 367
               T LH A       +   LL+  A+    D    T LH+A +      +++L+ Y  
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124

Query: 368 DINLQDNDGWTPLHLAVQARRTDIVKLL 395
           D++ Q     T   +++     D+ ++L
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 375 DGWTPLHLAVQARRTDIVKLLLIKGAD 401
           D    L  A +A + D V++L+  GA 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAP 27

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (86), Expect = 6e-04
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYL 329
              LH          V+ L+K+  D++   K   TA   +I    + +   L
Sbjct: 101 MTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 1e-09
 Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 280 PLHSL---AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
           PL  L   +  GEF  V  ++    D +  + +G+TALH A+      +  +L++   N 
Sbjct: 1   PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 60

Query: 337 FVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDN-DGWTPLHLAVQARR--TDIVK 393
              D DG T LH A    +    K L+     +      D  T      +     T   +
Sbjct: 61  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 120

Query: 394 LLLIKGA 400
            L     
Sbjct: 121 FLYGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%)

Query: 311 LTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDIN 370
           L  L  + +  +  +   ++ E  +P + +++G T LH AV    +  +K L+ + V++N
Sbjct: 2   LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 61

Query: 371 LQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKN-RDGLTPLDLC 416
             D+DGWTPLH A       + K L+  GA        D  T  D C
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC 108

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 2e-08
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 365 YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
              ++  +++ G T   LA    R ++V L+   G
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 3e-06
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 4/155 (2%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            L S AA G+   + +LL++NV++NA +  G TAL    +G  +     LLR +      
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKD 63

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
               A +   A          +L          +         A +     +  L+    
Sbjct: 64  RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 123

Query: 400 ADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434
           ++   +N  G T  DL    GR+     ++ L++ 
Sbjct: 124 SNVGHRNHKGDTACDLARLYGRN----EVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 6/32 (18%), Positives = 10/32 (31%)

Query: 378 TPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
             L  A      + +  LL    +   +N  G
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFG 34

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 1e-07
 Identities = 24/117 (20%), Positives = 45/117 (38%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
            L + AA G    V ALL+   + NA +  G   +   ++G  +     LL  +      
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
                  +H A +      + +L      ++++D  G  P+ LA +    D+ + L 
Sbjct: 66  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 4/117 (3%)

Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
                  +G+   V   +    D+N   + G   LH A    +  +  +LL + A+    
Sbjct: 5   EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 64

Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
           D+   T L  AV       +K+LL    D  ++  DG T L           +K LL
Sbjct: 65  DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN----QAIKALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	439
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.86
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.84
d2d6fa2	352	Glutamyl-tRNA(Gln) amidotransferase subunit D, Gat	98.55
d1zq1a2	363	Glutamyl-tRNA(Gln) amidotransferase subunit D, Gat	98.55
d2ocda1	336	Asparaginase type II {Vibrio cholerae [TaxId: 666]	98.25
d1wsaa_	328	Asparaginase type II {Wolinella succinogenes [TaxI	98.21
d1nnsa_	326	Asparaginase type II {Escherichia coli [TaxId: 562	98.12
d1o7ja_	325	Asparaginase type II {Erwinia chrysanthemi [TaxId:	97.92
d4pgaa_	330	Glutaminase-asparaginase {Pseudomonas sp., 7A [Tax	97.91
d1agxa_	331	Glutaminase-asparaginase {Acinetobacter glutaminas	97.9

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-35  Score=271.32  Aligned_cols=213  Identities=29%  Similarity=0.362  Sum_probs=197.4

Q ss_pred             CCcHHHHHHhcCcHHHH-HHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcC
Q 013643          216 PKNPKWAVYGRGLDDVS-EFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAASG  288 (439)
Q Consensus       216 g~t~l~~A~~~g~~eiv-~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g  288 (439)
                      ..+.++.++..|+.+.+ ++|.+.+..++..+ ..|+||||      +.++.+++...+.+....+..+.++++.|+..|
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D-~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTD-QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCC-TTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcC-CCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccc
Confidence            35677777888886666 55566788888888 89999998      788899999999998888899999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Q 013643          289 EFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD  368 (439)
Q Consensus       289 ~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gad  368 (439)
                      +.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+..|++
T Consensus        82 ~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~  161 (223)
T d1uoha_          82 RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS  161 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhc
Q 013643          369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ  434 (439)
Q Consensus       369 in~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~  434 (439)
                      ++.+|..|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|. .|+.    +|+|+|++
T Consensus       162 i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~----~i~~~Ll~  222 (223)
T d1uoha_         162 TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLG----LILKRMVE  222 (223)
T ss_dssp             SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHH----HHHHHHHC
T ss_pred             eeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCH----HHHhcccC
Confidence            9999999999999999999999999999999999999999999999984 6775    89999886

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3e-35  Score=276.03  Aligned_cols=199  Identities=25%  Similarity=0.244  Sum_probs=169.5

Q ss_pred             CCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHH
Q 013643          212 QRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFY  291 (439)
Q Consensus       212 ~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~e  291 (439)
                      .+..|.||||.|+..|+.+++++|++.|+++...                         +..+..|.||||+||..|+.+
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i-------------------------~~~~~~g~TpL~~A~~~g~~~   59 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYL-------------------------DLQNDLGQTALHLAAILGEAS   59 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGG-------------------------GCCCTTSCCHHHHHHHHTCHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-------------------------cCcCCCCCCccchHHhhcccc
Confidence            3467899999999999999999999998885432                         234566777888888888888


Q ss_pred             HHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCC-------------------------------------
Q 013643          292 FVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA-------------------------------------  334 (439)
Q Consensus       292 ivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga-------------------------------------  334 (439)
                      ++++|+++|++++..|..|.||||+|+..++.+++++|++.+.                                     
T Consensus        60 iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (255)
T d1oy3d_          60 TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE  139 (255)
T ss_dssp             HHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------
T ss_pred             cccccccccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHH
Confidence            8888888888888888888888888888888888777765432                                     


Q ss_pred             ----------CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 013643          335 ----------NPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQ-DNDGWTPLHLAVQARRTDIVKLLLIKGADKT  403 (439)
Q Consensus       335 ----------~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~-d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~  403 (439)
                                +++.++..|.||||+|+..|+.++|++|++++++.+.. +..|+||||+|++.|+.++|++|+++|+|++
T Consensus       140 ~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin  219 (255)
T d1oy3d_         140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT  219 (255)
T ss_dssp             ----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCC
Confidence                      33445778999999999999999999999999998865 6789999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCCC
Q 013643          404 LKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTSK  439 (439)
Q Consensus       404 ~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~k  439 (439)
                      .+|..|+||||+|+..|+.    +|+++|++++..|
T Consensus       220 ~~d~~g~t~L~~A~~~~~~----~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         220 ARMYGGRTPLGSALLRPNP----ILARLLRAHGAPE  251 (255)
T ss_dssp             CCCTTSCCHHHHHHTSSCH----HHHHHHHHTTCCC
T ss_pred             CCCCCCCCHHHHHHHCCCH----HHHHHHHHcCCCC
Confidence            9999999999999999996    9999999998754

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-32  Score=269.45  Aligned_cols=227  Identities=25%  Similarity=0.248  Sum_probs=209.0

Q ss_pred             hhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCC
Q 013643          203 VNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSK  276 (439)
Q Consensus       203 l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~  276 (439)
                      +..+......+..+.+||+.|+..|+.+++++|+.+|++++..+ ..|.|+++      ..+....+..........+..
T Consensus       152 l~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~  230 (408)
T d1n11a_         152 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA-WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ  230 (408)
T ss_dssp             HHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccC-CCCCCcchhhhccchhhhhhhhhhccccccccCCC
Confidence            33443444556678999999999999999999999999999998 89999998      666777788888888888889


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH
Q 013643          277 KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASS  356 (439)
Q Consensus       277 g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~  356 (439)
                      +.|||++|+..++.++++++++.+...+..+..|.|||+.|+..++.+++++|+++|++++..+..+.||||.|+..++.
T Consensus       231 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~  310 (408)
T d1n11a_         231 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI  310 (408)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCS
T ss_pred             CCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhc
Q 013643          357 PAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ  434 (439)
Q Consensus       357 ~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~  434 (439)
                      ++++++++.|+++|.+|.+|+||||+|++.|+.++|++|+++|||++.+|.+|+||||+|++.|+.    +|+++|..
T Consensus       311 ~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~----~iv~~L~~  384 (408)
T d1n11a_         311 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI----SVTDVLKV  384 (408)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCH----HHHHHHHH
T ss_pred             eeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH----HHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999995    66665543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=4.6e-32  Score=259.12  Aligned_cols=204  Identities=21%  Similarity=0.283  Sum_probs=189.9

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHc
Q 013643          214 VPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAAS  287 (439)
Q Consensus       214 ~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~  287 (439)
                      ..+.|+|+.|+..|+.++|++|++.|+++|..+ ..|.|||+      +.+++++|++++.+....+..+.+||++|+..
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d-~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYAN-VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBC-TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc
Confidence            345689999999999999999999999999999 89999999      78999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHC-CC--------------------------CCCccC
Q 013643          288 GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRE-SA--------------------------NPFVVD  340 (439)
Q Consensus       288 g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~-ga--------------------------~v~~~d  340 (439)
                      |+.++++.|+++|+..+..+..+.+++++|+..++.++++.++.. +.                          +....+
T Consensus       117 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (291)
T d1s70b_         117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA  196 (291)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred             cccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccccc
Confidence            999999999999999999999999999999999999888887753 22                          234456


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 013643          341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLY  418 (439)
Q Consensus       341 ~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~  418 (439)
                      ..|.||||+|+..|+.+++++|++.|+++|.++..|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|++
T Consensus       197 ~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             CCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999999974

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=5e-32  Score=256.16  Aligned_cols=217  Identities=22%  Similarity=0.254  Sum_probs=149.7

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHH--------hCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCch
Q 013643          214 VPPKNPKWAVYGRGLDDVSEFFN--------SGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWL  279 (439)
Q Consensus       214 ~~g~t~l~~A~~~g~~eiv~~Ll--------~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~t  279 (439)
                      ..|+||||+|+..|+.+++++|+        +.|+++|..+ ..|+||||      +.+++++|+++|++++..+..|.|
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d-~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t  109 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD-CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS  109 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccC-CCCCeeeccccccccccccccccccccccccccccccc
Confidence            35899999999999999988875        4455555554 45555554      344444444444444444444445


Q ss_pred             HHHHHHHcCCHHHHHHHHhCC---CCCcccCCCCChHHHHHHHcCCHH---HHHHHHHCCC--------CCCccCCCCCC
Q 013643          280 PLHSLAASGEFYFVDALLKHN---VDINAVDKDGLTALHKAIIGKKQA---VTNYLLRESA--------NPFVVDEDGAT  345 (439)
Q Consensus       280 pLh~Aa~~g~~eivk~LL~~g---adin~~d~~g~t~L~~Aa~~g~~~---iv~~LL~~ga--------~v~~~d~~g~T  345 (439)
                      ||++|+..++.++++++...+   ..++..+..+.++.+.+...+..+   .+.++.....        ..+..+..|.|
T Consensus       110 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  189 (277)
T d2fo1e1         110 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT  189 (277)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred             cccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCC
Confidence            555554444444444444332   223333444444444444433221   2222222211        12234567999


Q ss_pred             HHHHHHHcCCHHHHHHHH-hCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcch
Q 013643          346 LLHYAVQTASSPAIKILL-LYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTR  424 (439)
Q Consensus       346 pLh~A~~~g~~~iV~~Ll-~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~  424 (439)
                      +||+++..++.+++++++ ..+.+++.+|..|+||||+|++.|+.++|++|+++|+|++.+|.+|+||||+|++.|+.  
T Consensus       190 ~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~--  267 (277)
T d2fo1e1         190 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH--  267 (277)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCH--
T ss_pred             ccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCH--
Confidence            999999999999998755 66899999999999999999999999999999999999999999999999999999995  


Q ss_pred             HHHHHHHHhcC
Q 013643          425 TFGMIKLLKQL  435 (439)
Q Consensus       425 ~~eiik~L~~~  435 (439)
                        +|+++|.++
T Consensus       268 --~iv~lL~~c  276 (277)
T d2fo1e1         268 --NIVDIFDRC  276 (277)
T ss_dssp             --HHHHHHHTT
T ss_pred             --HHHHHHHHh
Confidence              999999875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.5e-31  Score=244.05  Aligned_cols=214  Identities=22%  Similarity=0.265  Sum_probs=194.3

Q ss_pred             CcHHHHHHhcCcHHHHHHHHh-CCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcc---cCCCCCchHHHHHHH
Q 013643          217 KNPKWAVYGRGLDDVSEFFNS-GNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLA---TATSKKWLPLHSLAA  286 (439)
Q Consensus       217 ~t~l~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~---~~d~~g~tpLh~Aa~  286 (439)
                      .+|||+|+..|+.++++.|++ .+.+++..+ ..|+||||      +.+++++|+++|++++   ..+..|.+++|+|+.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCC-TTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccC-CCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            479999999999999988877 567888888 89999999      7889999999999886   456788999999999


Q ss_pred             cCCHHHHHHHHhCCCCCc--ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh
Q 013643          287 SGEFYFVDALLKHNVDIN--AVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLL  364 (439)
Q Consensus       287 ~g~~eivk~LL~~gadin--~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~  364 (439)
                      .+..++++.++..+.+.+  ..+..+.++++.++..++.+++++|+..|.+.+.++..|+||||+|+..|+.+++++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccc
Confidence            999999999999887544  466788999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643          365 YN-VDINLQDNDGWTPLHLAVQARRTDIVKLLLI-KGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       365 ~g-adin~~d~~G~TpLh~A~~~g~~eiv~~LL~-~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                      .| .+++.+|.+|+||||+|+..|+.++|++|++ .|+|++.+|..|+||||+|+.       .+|+++|++.+.+
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~-------~~~~~~Ll~~g~d  228 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN-------EQVKKFFLNNVVD  228 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC-------HHHHHHHHHHCCC
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh-------HHHHHHHHHcCCC
Confidence            97 6889999999999999999999999999996 599999999999999999973       2799999987653

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-31  Score=245.72  Aligned_cols=186  Identities=22%  Similarity=0.219  Sum_probs=176.4

Q ss_pred             CCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHH
Q 013643          210 CTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHS  283 (439)
Q Consensus       210 ~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~  283 (439)
                      ...+..|+||||.|+..|+.+++++|+..+.+..... ..+.++++      +.++.++|++++++++..|..|+||||+
T Consensus        31 ~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~  109 (223)
T d1uoha_          31 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHY  109 (223)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             cCcCCCCCCHHHHHHHhhhhccccccccccccccccc-ccccccccccccccccchhHHHhccCceeEeeCCCCCchhhH
Confidence            4567789999999999999999999999999888877 67778777      6788999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Q 013643          284 LAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL  363 (439)
Q Consensus       284 Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll  363 (439)
                      |+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+..+.+++.+|..|.||||+|+..|+.++|++|+
T Consensus       110 A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL  189 (223)
T d1uoha_         110 AASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV  189 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 013643          364 LYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI  397 (439)
Q Consensus       364 ~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~  397 (439)
                      ++|+|++.+|.+|+||||+|. .|+.+|+++|++
T Consensus       190 ~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         190 SQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             HTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             HCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            999999999999999999984 699999999985

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.6e-30  Score=257.49  Aligned_cols=233  Identities=23%  Similarity=0.303  Sum_probs=192.7

Q ss_pred             HHhhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------h------------------
Q 013643          201 DFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------T------------------  256 (439)
Q Consensus       201 ~~l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~------------------  256 (439)
                      .++..+......+..|+||||+|+..|+.+++++|+++|++++..+ ..|.|||+      .                  
T Consensus        18 ~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~-~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~   96 (408)
T d1n11a_          18 NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA-KDDQTPLHCAARIGHTNMVKLLLENNANPNLAT   96 (408)
T ss_dssp             HHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCC-TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHhhhcccccc
Confidence            3344444455566789999999999999999999999999999988 88998876      1                  


Q ss_pred             ------------------------------------------------HHHHHHHhhcCCCcccCCCCCchHHHHHHHcC
Q 013643          257 ------------------------------------------------KEEKVLLNKKLPHLATATSKKWLPLHSLAASG  288 (439)
Q Consensus       257 ------------------------------------------------~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g  288 (439)
                                                                      .++.+.|++.+.+++..+..|.+|||+|+..|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~  176 (408)
T d1n11a_          97 TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN  176 (408)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTT
T ss_pred             ccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcC
Confidence                                                            34455667777777777777788888888888


Q ss_pred             CHHHHHHHHhCCCCCcccCC---------------------------------CCChHHHHHHHcCCHHHHHHHHHCCCC
Q 013643          289 EFYFVDALLKHNVDINAVDK---------------------------------DGLTALHKAIIGKKQAVTNYLLRESAN  335 (439)
Q Consensus       289 ~~eivk~LL~~gadin~~d~---------------------------------~g~t~L~~Aa~~g~~~iv~~LL~~ga~  335 (439)
                      +.+++++|+++|++++..+.                                 .+.|||++|+..++.+++++++..+..
T Consensus       177 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~  256 (408)
T d1n11a_         177 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN  256 (408)
T ss_dssp             CHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             CHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccc
Confidence            88888888887777664433                                 344566666666677777777777777


Q ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 013643          336 PFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL  415 (439)
Q Consensus       336 v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~  415 (439)
                      .+..+..|.|||+.|+..++.+++++|+++|++++..+..+.||||.|+..++.+++++|+++|++++.+|.+|.||||+
T Consensus       257 ~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~  336 (408)
T d1n11a_         257 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ  336 (408)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHH
Confidence            77778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCcchHHHHHHHHhcCCCC
Q 013643          416 CLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       416 A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                      |++.|+.    +++++|++.+.+
T Consensus       337 A~~~g~~----~iv~~Ll~~GAd  355 (408)
T d1n11a_         337 AAQQGHT----DIVTLLLKNGAS  355 (408)
T ss_dssp             HHHTTCH----HHHHHHHHTTCC
T ss_pred             HHHcCCH----HHHHHHHHCCCC
Confidence            9999995    999999998753

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.6e-31  Score=244.99  Aligned_cols=194  Identities=25%  Similarity=0.247  Sum_probs=166.6

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHH
Q 013643          215 PPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVD  294 (439)
Q Consensus       215 ~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk  294 (439)
                      +|.||||+|+..|..++++.|++                        .+...+.+++..|..|+||||+||..|+.++++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~------------------------~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~   56 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIR------------------------QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE   56 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----------------------------CCCCCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHH------------------------HHHhCCCCcccCCCCCCcccccccccccccccc
Confidence            48999999999988654333321                        222334455556778899999999999999999


Q ss_pred             HHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCC------ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Q 013643          295 ALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF------VVDEDGATLLHYAVQTASSPAIKILLLYNVD  368 (439)
Q Consensus       295 ~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~------~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gad  368 (439)
                      +|+++|++++..|..|.|||++|+..++.++++.|++.+....      .....|.||||+|+..++.+++++|+..|++
T Consensus        57 ~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~  136 (221)
T d1iknd_          57 ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD  136 (221)
T ss_dssp             CCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcc
Confidence            9999999999999999999999999999999999999876543      2345689999999999999999999999999


Q ss_pred             CccCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643          369 INLQD-NDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       369 in~~d-~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~  436 (439)
                      ++..+ .+|+||||+|++.|+.+++++|+++|+|++.+|..|+||||+|+..++.    +++++|.++.
T Consensus       137 ~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~----~~~~~l~~~~  201 (221)
T d1iknd_         137 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST----RIQQQLGQLT  201 (221)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCH----HHHHHHHTTS
T ss_pred             cccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCH----HHHHHHHHcC
Confidence            98775 5799999999999999999999999999999999999999999999996    8888887764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.1e-29  Score=234.86  Aligned_cols=219  Identities=23%  Similarity=0.222  Sum_probs=177.4

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcC
Q 013643          215 PPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAASG  288 (439)
Q Consensus       215 ~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g  288 (439)
                      .|+||||+|+..|+.+++++|++.+....... ..+.++.+      ..+..........+....+..+.++++.|+..|
T Consensus        38 ~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~  116 (285)
T d1wdya_          38 GGWTPLHNAVQMSREDIVELLLRHGADPVLRK-KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG  116 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHhhhhccccccccccc-cccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhc
Confidence            46667766666666677777666666666555 45555444      333444445555555566777888888888888


Q ss_pred             CHHHHHHHHhCCCCCccc----------CCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcC---
Q 013643          289 EFYFVDALLKHNVDINAV----------DKDGLTALHKAIIGKKQAVTNYLLRE-SANPFVVDEDGATLLHYAVQTA---  354 (439)
Q Consensus       289 ~~eivk~LL~~gadin~~----------d~~g~t~L~~Aa~~g~~~iv~~LL~~-ga~v~~~d~~g~TpLh~A~~~g---  354 (439)
                      +...++.+++...+++..          +..|.||||+|+..|+.+++++|+++ |++++..+..|.++++.+...+   
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~  196 (285)
T d1wdya_         117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS  196 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTT
T ss_pred             chhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccch
Confidence            888888888887776543          34589999999999999999999975 8999999999999888766543   


Q ss_pred             -CHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHH
Q 013643          355 -SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI-KGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL  432 (439)
Q Consensus       355 -~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~-~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L  432 (439)
                       ..+++++|+++|++++.++..|+||||+|++.|+.++|++|++ .|+|++.+|.+|.||||+|++.|+.    +++++|
T Consensus       197 ~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~----eiv~~L  272 (285)
T d1wdya_         197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK----KIAELL  272 (285)
T ss_dssp             THHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCH----HHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCH----HHHHHH
Confidence             3579999999999999999999999999999999999999997 5999999999999999999999995    999999


Q ss_pred             hcCCCC
Q 013643          433 KQLPTS  438 (439)
Q Consensus       433 ~~~~~~  438 (439)
                      ++.+.+
T Consensus       273 l~~GAd  278 (285)
T d1wdya_         273 CKRGAS  278 (285)
T ss_dssp             HHHSSC
T ss_pred             HHCCCC
Confidence            998765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=3.5e-29  Score=227.23  Aligned_cols=198  Identities=22%  Similarity=0.246  Sum_probs=146.9

Q ss_pred             HHHHHHHhCCCCCCCC-CCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCC
Q 013643          230 DVSEFFNSGNYDPPDK-KSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVD  302 (439)
Q Consensus       230 eiv~~Ll~~ga~~n~~-~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gad  302 (439)
                      |+|++|+++|+++|.. + ..|.||||      +.+++++|+..+++++..+..+.++++.++..++.............
T Consensus         3 ~~v~~Ll~~g~din~~~d-~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           3 QVISDLLAQGAELNATMD-KTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHCCCCcCcCcC-CCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            5566666666555542 3 44555555      44455555555555555555555555555555544444433333221


Q ss_pred             -CcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHH
Q 013643          303 -INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLH  381 (439)
Q Consensus       303 -in~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh  381 (439)
                       .......+.+..+.+.......+.+.|...+++++.++..|.|||++|+..+...+++.|++.+++++..|..|.||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~  161 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF  161 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccc
Confidence             1222334455555555666667778888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHH
Q 013643          382 LAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL  432 (439)
Q Consensus       382 ~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L  432 (439)
                      +|+..|+.++|++|+++|||++.+|..|+||||+|++.|+.    +||++|
T Consensus       162 ~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~----~iv~lL  208 (209)
T d1ot8a_         162 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHH----DIVRLL  208 (209)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHH
T ss_pred             hhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCH----HHHhhc
Confidence            99999999999999999999999999999999999999995    899987

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-28  Score=212.18  Aligned_cols=153  Identities=31%  Similarity=0.432  Sum_probs=147.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH
Q 013643          279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPA  358 (439)
Q Consensus       279 tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~i  358 (439)
                      ++||+||..|+.++|++|+++|++++.+|..|.||||+|+ .|+.+++++|+++|++++.++..|.++|+.++..++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7999999999999999999999999999999999999886 789999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643          359 IKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA-DKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       359 V~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Ga-di~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~  436 (439)
                      ++.|+..+.+++..+..|.+|||+|+..++.+++++|+++|+ +++.+|..|+||||+|+..|+.    +++++|++.+
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~----~iv~~Ll~~G  156 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN----EVVSLMQANG  156 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCH----HHHHHHHhcC
Confidence            999999999999999999999999999999999999999886 8999999999999999999995    9999999864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.1e-28  Score=218.83  Aligned_cols=211  Identities=23%  Similarity=0.186  Sum_probs=186.4

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHh----CCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHH
Q 013643          215 PPKNPKWAVYGRGLDDVSEFFNS----GNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSL  284 (439)
Q Consensus       215 ~g~t~l~~A~~~g~~eiv~~Ll~----~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~A  284 (439)
                      +|+||||.|+..|+.+++++|++    .|++++..+ ..|+||||      ..+++++|++.+++.+.....+.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d-~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN-NLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccC-CCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            58999999999999999998874    899999988 89999998      77888999999999999899999999999


Q ss_pred             HHcCCHHHHHHHHhCCC----CCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHcCCHHHH
Q 013643          285 AASGEFYFVDALLKHNV----DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF-VVDEDGATLLHYAVQTASSPAI  359 (439)
Q Consensus       285 a~~g~~eivk~LL~~ga----din~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~-~~d~~g~TpLh~A~~~g~~~iV  359 (439)
                      ...++.++++.+.....    ..+.......++|+.+...........|.....+.. .....+.++|+.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            99999998888876532    234455667889999999999988888888766544 3456899999999999999999


Q ss_pred             HHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHH
Q 013643          360 KILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIK  430 (439)
Q Consensus       360 ~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik  430 (439)
                      +++++.|.+++.+|..|.||||+|+..|+.+++++|+++|||++.+|.+|.||||+|++.|+.    +|||
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~----divk  227 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI----DILR  227 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHH----HHHT
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCc----cccC
Confidence            999999999999999999999999999999999999999999999999999999999998884    6664

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.6e-28  Score=229.74  Aligned_cols=163  Identities=28%  Similarity=0.344  Sum_probs=147.6

Q ss_pred             ccCCCCCchHHHHHHHcCCHHHHHHHHhCCCC---CcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHH
Q 013643          271 ATATSKKWLPLHSLAASGEFYFVDALLKHNVD---INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLL  347 (439)
Q Consensus       271 ~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gad---in~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpL  347 (439)
                      ...+.+|.||||+||..|+.+++++|+++|++   ++..+..|.||||+||..|+.+++++|+++|++++.+|..|.|||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhh
Confidence            34578899999999999999999999999988   566778899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhC-----------------------------------------------CCCCccCCCCCCcHH
Q 013643          348 HYAVQTASSPAIKILLLY-----------------------------------------------NVDINLQDNDGWTPL  380 (439)
Q Consensus       348 h~A~~~g~~~iV~~Ll~~-----------------------------------------------gadin~~d~~G~TpL  380 (439)
                      |+|+..++.+++++|++.                                               +.+++.++..|+|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            999999999999998732                                               234566788999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643          381 HLAVQARRTDIVKLLLIKGADKTLK-NRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT  437 (439)
Q Consensus       381 h~A~~~g~~eiv~~LL~~Gadi~~~-d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~  437 (439)
                      |+|+..|+.++|++|+++|++.+.. +..|.||||+|+..|+.    +++++|++.+.
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~----~~v~~Ll~~ga  216 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA----SVLELLLKAGA  216 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH----HHHHHHHHTTC
T ss_pred             cccccccccccccchhcccccccccccccccccccccccccHH----HHHHHHHHCCC
Confidence            9999999999999999999998864 67899999999999995    99999998753

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.5e-28  Score=209.56  Aligned_cols=151  Identities=32%  Similarity=0.448  Sum_probs=143.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH
Q 013643          279 LPLHSLAASGEFYFVDALLKH-NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSP  357 (439)
Q Consensus       279 tpLh~Aa~~g~~eivk~LL~~-gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~  357 (439)
                      ..|+.||..|+.++|+.|++. +++++..|..|+||||+|+ .|+.+++++|++++++++..+..|.+|+++|+..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            569999999999999999975 8899999999999999987 58899999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643          358 AIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL  435 (439)
Q Consensus       358 iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~  435 (439)
                      +++++++.|+++|.+|..|+||||+|++.|+.+++++|+ .|+|++.+|..|+||||+|+..|+.    +|+++|+++
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~----~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQ----DLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCH----HHHHHHHTT
T ss_pred             ccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCH----HHHHHHHhh
Confidence            999999999999999999999999999999999999887 7999999999999999999999995    999999875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.6e-27  Score=219.21  Aligned_cols=189  Identities=18%  Similarity=0.139  Sum_probs=167.8

Q ss_pred             CCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCC--CCCCCCcCC------hHHHHHHHhhcCCC--cccCCCCCch
Q 013643          210 CTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKK--SDGPRRKLF------TKEEKVLLNKKLPH--LATATSKKWL  279 (439)
Q Consensus       210 ~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~--~~~g~t~L~------~~~~~~lL~~~~~d--~~~~d~~g~t  279 (439)
                      ...+..|+||||+|+..|+.+++++|++.|++++..+  ...|.++++      ..++...+...+..  ....+..+.+
T Consensus        28 ~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d1ixva_          28 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT  107 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCC
T ss_pred             cccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4566789999999999999999999999999987432  267888888      45566666666554  4456778899


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHHH
Q 013643          280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRES-ANPFVVDEDGATLLHYAVQTASSPA  358 (439)
Q Consensus       280 pLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~g-a~v~~~d~~g~TpLh~A~~~g~~~i  358 (439)
                      +++.++..++.+++++|++.|.+.+..+..|+||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+.+|+.++
T Consensus       108 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~  187 (229)
T d1ixva_         108 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA  187 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHH
Confidence            999999999999999999999999999999999999999999999999999987 6789999999999999999999999


Q ss_pred             HHHHHh-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 013643          359 IKILLL-YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD  401 (439)
Q Consensus       359 V~~Ll~-~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gad  401 (439)
                      |++|++ .|+|++.+|..|+||||+|+   +.+++++|+++|+|
T Consensus       188 v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         188 AVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             HHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            999996 59999999999999999998   45899999999997

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2e-27  Score=205.46  Aligned_cols=151  Identities=25%  Similarity=0.278  Sum_probs=144.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH
Q 013643          278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSP  357 (439)
Q Consensus       278 ~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~  357 (439)
                      .|||+.||+.|+.++|++|+++|++++ .+..|+||||+|+..++.+++..++.........+..+.++++.++...+.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            389999999999999999999999987 6899999999999999999999999988888778888999999999999999


Q ss_pred             HHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHh
Q 013643          358 AIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK  433 (439)
Q Consensus       358 iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~  433 (439)
                      ++++|+.+|++.+.++.+|+||||+|+..|+.++|++|+++|+|++.+|..|.|||++|+..|+.    +|+++|+
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~----eiv~lL~  153 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE----DLAEILQ  153 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHC
T ss_pred             eeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCH----HHHHhCc
Confidence            99999999999999999999999999999999999999999999999999999999999999995    8999874

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-26  Score=218.85  Aligned_cols=209  Identities=23%  Similarity=0.237  Sum_probs=174.8

Q ss_pred             chHHHhhcC-CCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCc
Q 013643          198 GFQDFVNSS-SSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHL  270 (439)
Q Consensus       198 ~~~~~l~~~-~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~  270 (439)
                      ++-+++... .........+.++.+.++..+..+...++++...+....+ ..+.++++      .......+.....++
T Consensus        53 eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~~~~~~~~~  131 (285)
T d1wdya_          53 DIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD-FYGFTAFMEAAVYGKVKALKFLYKRGANV  131 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC-TTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccc-cCCCchhHHHHHhcchhhhhhhhhhcccc
Confidence            344454443 4445666688899999999999999999999987777766 78888887      344455555544444


Q ss_pred             cc----------CCCCCchHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCChHHHHHHHc----CCHHHHHHHHHCCCC
Q 013643          271 AT----------ATSKKWLPLHSLAASGEFYFVDALLKH-NVDINAVDKDGLTALHKAIIG----KKQAVTNYLLRESAN  335 (439)
Q Consensus       271 ~~----------~d~~g~tpLh~Aa~~g~~eivk~LL~~-gadin~~d~~g~t~L~~Aa~~----g~~~iv~~LL~~ga~  335 (439)
                      +.          ....|.||||+|+..|+.+++++|+++ |++++..+..|.++++.+...    +..+++++|+++|++
T Consensus       132 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~  211 (285)
T d1wdya_         132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD  211 (285)
T ss_dssp             TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC
T ss_pred             cccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC
Confidence            32          245688999999999999999999975 899999999999888776543    345799999999999


Q ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 013643          336 PFVVDEDGATLLHYAVQTASSPAIKILLLY-NVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNR  407 (439)
Q Consensus       336 v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~-gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~  407 (439)
                      ++.++..|.||||+|+..|+.++|++|++. |+++|.+|.+|+||||+|++.|+.++|++|+++|||+|++|.
T Consensus       212 ~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            999999999999999999999999999975 999999999999999999999999999999999999999874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.9e-26  Score=208.94  Aligned_cols=182  Identities=25%  Similarity=0.219  Sum_probs=163.5

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC-------hHHHHHHHhhcCCCcccCCCCCchHHHHHH
Q 013643          213 RVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF-------TKEEKVLLNKKLPHLATATSKKWLPLHSLA  285 (439)
Q Consensus       213 ~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~-------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa  285 (439)
                      +..|.||||+|+..|+.+++++|++.|++++..+ ..+.++++       .....................+.+..+.+.
T Consensus        20 d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (209)
T d1ot8a_          20 DKTGETSLHLAARFARADAAKRLLDAGADANSQD-NTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA   98 (209)
T ss_dssp             HHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhhcccccccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4578999999999999999999999999999988 88888887       222223333334444455667888999999


Q ss_pred             HcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC
Q 013643          286 ASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLY  365 (439)
Q Consensus       286 ~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~  365 (439)
                      ........+.|+..+++++..+..|+|+|++|+..+...+++.|+..+.+++..|..|.||||+|+..|+.++|++|+++
T Consensus        99 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  178 (209)
T d1ot8a_          99 RLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN  178 (209)
T ss_dssp             HTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q 013643          366 NVDINLQDNDGWTPLHLAVQARRTDIVKLL  395 (439)
Q Consensus       366 gadin~~d~~G~TpLh~A~~~g~~eiv~~L  395 (439)
                      |+|++.+|..|+||||+|+++|+.+||++|
T Consensus       179 gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         179 FANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999999999999987

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.8e-27  Score=202.35  Aligned_cols=153  Identities=19%  Similarity=0.211  Sum_probs=144.7

Q ss_pred             cHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHHH
Q 013643          218 NPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALL  297 (439)
Q Consensus       218 t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL  297 (439)
                      ++||.|+..|+.+++++|+++|++++..+                            ..|+||||+|+ .|+.+++++|+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d----------------------------~~g~TpL~~A~-~~~~ei~~~Ll   53 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQN----------------------------GFGRTALQVMK-LGNPEIARRLL   53 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCC----------------------------TTSCCHHHHCC-SSCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccC----------------------------Ccccccccccc-ccccccccccc
Confidence            79999999999999999999998887655                            46778999876 78999999999


Q ss_pred             hCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCccCCCCC
Q 013643          298 KHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNV-DINLQDNDG  376 (439)
Q Consensus       298 ~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~ga-din~~d~~G  376 (439)
                      ++|++++..+..+.++++.++..++..++++|++.+.+++..+..|.++||+|+..++.+++++|+++|. +++.+|..|
T Consensus        54 ~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g  133 (156)
T d1ihba_          54 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG  133 (156)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS
T ss_pred             ccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999876 899999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcC
Q 013643          377 WTPLHLAVQARRTDIVKLLLIKG  399 (439)
Q Consensus       377 ~TpLh~A~~~g~~eiv~~LL~~G  399 (439)
                      +||||+|++.|+.++|++|+++|
T Consensus       134 ~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         134 DTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.3e-26  Score=198.00  Aligned_cols=151  Identities=24%  Similarity=0.238  Sum_probs=138.9

Q ss_pred             cHHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHH
Q 013643          218 NPKWAVYGRGLDDVSEFFNSG-NYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDAL  296 (439)
Q Consensus       218 t~l~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~L  296 (439)
                      +.|+.|+..|+.++|++|++. +++++..                            |..|+||||+|+ .|+.+++++|
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~----------------------------d~~g~t~L~~A~-~~~~~~v~~L   54 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDAL----------------------------NRFGKTALQVMM-FGSTAIALEL   54 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCC----------------------------CTTSCCHHHHSC-TTCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCcc----------------------------CCCCCccccccc-cccccccccc
Confidence            458999999999999999875 5555544                            567789999886 5889999999


Q ss_pred             HhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCC
Q 013643          297 LKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDG  376 (439)
Q Consensus       297 L~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G  376 (439)
                      ++++++++..+..|.+|++.|+..++.+++++++++|++++.++..|.||||+|+..|+.+++++|+ .|++++.+|..|
T Consensus        55 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G  133 (156)
T d1bd8a_          55 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARG  133 (156)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999887 789999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHc
Q 013643          377 WTPLHLAVQARRTDIVKLLLIK  398 (439)
Q Consensus       377 ~TpLh~A~~~g~~eiv~~LL~~  398 (439)
                      +||||+|++.|+.+++++|++|
T Consensus       134 ~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         134 LTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999976

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=7.8e-26  Score=215.41  Aligned_cols=179  Identities=23%  Similarity=0.300  Sum_probs=163.2

Q ss_pred             hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q 013643          256 TKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN  335 (439)
Q Consensus       256 ~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~  335 (439)
                      +.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++.+..+..+.+||++|+..++.++++.|+++|+.
T Consensus        52 ~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~  131 (291)
T d1s70b_          52 DTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH  131 (291)
T ss_dssp             CHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhcccccCcc
Confidence            77788999999999999999999999999999999999999999999988889999999999999999999999999999


Q ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhC---------------------------CCCCccCCCCCCcHHHHHHHcCC
Q 013643          336 PFVVDEDGATLLHYAVQTASSPAIKILLLY---------------------------NVDINLQDNDGWTPLHLAVQARR  388 (439)
Q Consensus       336 v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~---------------------------gadin~~d~~G~TpLh~A~~~g~  388 (439)
                      .+..+..+.+++++|+..++.+.++.++..                           ..+....+..|.||||+|+..|+
T Consensus       132 ~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~  211 (291)
T d1s70b_         132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY  211 (291)
T ss_dssp             TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             cccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCC
Confidence            999999999999999999988888887742                           23345567789999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643          389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS  438 (439)
Q Consensus       389 ~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~  438 (439)
                      .+++++|+++|+|++.++..|+||||+|+..|+.    +|+++|++++.+
T Consensus       212 ~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~----~iv~lLl~~Gad  257 (291)
T d1s70b_         212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKE----EACRILVENLCD  257 (291)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHHTTCC
T ss_pred             hhhhcccccceecccccccCCCCHHHHHHHcCCH----HHHHHHHHCCCC
Confidence            9999999999999999999999999999999995    999999997653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.3e-25  Score=192.31  Aligned_cols=150  Identities=22%  Similarity=0.257  Sum_probs=141.2

Q ss_pred             CcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHH
Q 013643          217 KNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDAL  296 (439)
Q Consensus       217 ~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~L  296 (439)
                      .|||+.|+..|+.+++++|+++|++++.                             +..|+||||+|+..++.++++.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~~-----------------------------~~~g~t~L~~a~~~~~~~~~~~~   53 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFTT-----------------------------DWLGTSPLHLAAQYGHFSTTEVL   53 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCCC-----------------------------CTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCccc-----------------------------ccCCCcccccccccccccccccc
Confidence            4899999999999999999999987652                             34578999999999999999999


Q ss_pred             HhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCC
Q 013643          297 LKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDG  376 (439)
Q Consensus       297 L~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G  376 (439)
                      +.........+..+.++++.++...+.+++++++.+|++.+.++..|.||||+|+..|+.++|++|+++|++++.+|..|
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g  133 (153)
T d1awcb_          54 LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC  133 (153)
T ss_dssp             HTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             ccccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCC
Confidence            99988888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHH
Q 013643          377 WTPLHLAVQARRTDIVKLL  395 (439)
Q Consensus       377 ~TpLh~A~~~g~~eiv~~L  395 (439)
                      +||||+|+.+|+.+++++|
T Consensus       134 ~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         134 KTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHhC
Confidence            9999999999999999987

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=2.8e-28  Score=240.77  Aligned_cols=192  Identities=16%  Similarity=0.085  Sum_probs=149.9

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHH---HHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCC
Q 013643          213 RVPPKNPKWAVYGRGLDDVSEF---FNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGE  289 (439)
Q Consensus       213 ~~~g~t~l~~A~~~g~~eiv~~---Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~  289 (439)
                      +..|.|+|+.|+.+|+.+++++   |++.|+++|..                            +..|+||||+||..|+
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~----------------------------~~~g~taL~~Aa~~G~  138 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI----------------------------QAENYQAFRLAAENGH  138 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC------------------------------CHHHHHHHHHHHHTTC
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccccc----------------------------CCCCCCHHHHHHHCCC
Confidence            4567899999999999888776   56666666554                            4567799999999999


Q ss_pred             HHHHHHHHhCCCCCcccC--CCCChHHHHHHHcCCHHHHHHHHHCCCCCC---ccCCCCCCHHHHHHHcCCHHHHHHHHh
Q 013643          290 FYFVDALLKHNVDINAVD--KDGLTALHKAIIGKKQAVTNYLLRESANPF---VVDEDGATLLHYAVQTASSPAIKILLL  364 (439)
Q Consensus       290 ~eivk~LL~~gadin~~d--~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~---~~d~~g~TpLh~A~~~g~~~iV~~Ll~  364 (439)
                      .++|++|+++|++++..+  .+|.||||+||..|+.++|++|++.|++..   ..+..|.||++.|+.+|+.++|++|++
T Consensus       139 ~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~  218 (346)
T d2ajaa1         139 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD  218 (346)
T ss_dssp             HHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHh
Confidence            999999999999988765  358899999999999999999999887643   334566788888889999999999988


Q ss_pred             CCCCCccCC---------------------------------CC----------------CCcHHHHHHHcCCHHHHHHH
Q 013643          365 YNVDINLQD---------------------------------ND----------------GWTPLHLAVQARRTDIVKLL  395 (439)
Q Consensus       365 ~gadin~~d---------------------------------~~----------------G~TpLh~A~~~g~~eiv~~L  395 (439)
                      .|++++..+                                 ..                +.++|+.|+..|+.+++++|
T Consensus       219 ~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~L  298 (346)
T d2ajaa1         219 CPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFL  298 (346)
T ss_dssp             SHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred             CCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHH
Confidence            765433210                                 01                23677788888999999999


Q ss_pred             HHcCCC-----CCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643          396 LIKGAD-----KTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       396 L~~Gad-----i~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~  436 (439)
                      ++.++.     .+..+.+|.||||+|++.|+.    +++++|++.|
T Consensus       299 l~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~----e~v~lLL~~p  340 (346)
T d2ajaa1         299 LSIPGIKALAPTATIPGDANELLRLALRLGNQ----GACALLLSIP  340 (346)
T ss_dssp             HTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCT----THHHHHTTSH
T ss_pred             HhCcChhhhcccccCCCCCCcHHHHHHHcCcH----HHHHHHhCCC
Confidence            987764     445566899999999999997    9999999864

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.3e-25  Score=215.13  Aligned_cols=150  Identities=28%  Similarity=0.340  Sum_probs=124.9

Q ss_pred             hcCCCcccC-CCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCH-------HHHHHHHHCCCCC
Q 013643          265 KKLPHLATA-TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQ-------AVTNYLLRESANP  336 (439)
Q Consensus       265 ~~~~d~~~~-d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~-------~iv~~LL~~ga~v  336 (439)
                      ..+.+++.. |..|+||||+||..|+.++|++|+++|++++.+|..|+||||.||..++.       +++++|.   ..+
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~  170 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCL  170 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGG
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhh
Confidence            456677765 89999999999999999999999999999999999999999999987652       4555553   345


Q ss_pred             CccCCCCCCHHHHHHHcCC----HH--------HHHHHHhCCC-------------------------------------
Q 013643          337 FVVDEDGATLLHYAVQTAS----SP--------AIKILLLYNV-------------------------------------  367 (439)
Q Consensus       337 ~~~d~~g~TpLh~A~~~g~----~~--------iV~~Ll~~ga-------------------------------------  367 (439)
                      +.+|..|+||||+|+..+.    ..        ++.+++..+.                                     
T Consensus       171 ~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (301)
T d1sw6a_         171 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN  250 (301)
T ss_dssp             GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred             hhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc
Confidence            6688999999999886543    22        2334443321                                     


Q ss_pred             CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 013643          368 DINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCL  417 (439)
Q Consensus       368 din~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~  417 (439)
                      .+|.+|..|+||||+|++.|+.++|++|+++|||++.+|+.|.|||++|+
T Consensus       251 ~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         251 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            26889999999999999999999999999999999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-25  Score=188.97  Aligned_cols=118  Identities=23%  Similarity=0.267  Sum_probs=64.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCC-cHHHHHHHcCCHH
Q 013643          312 TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGW-TPLHLAVQARRTD  390 (439)
Q Consensus       312 t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~-TpLh~A~~~g~~e  390 (439)
                      ++||+||..|+.++|++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++.++..|. ||||+|++.|+.+
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~   83 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLD   83 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            4555555555555555555555555555555555555442 4555555555555555555555443 3555555555555


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhc
Q 013643          391 IVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ  434 (439)
Q Consensus       391 iv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~  434 (439)
                      ++++|+++|+|++.+|..|+||||+|+..|+.    +++++|++
T Consensus        84 ~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~----~~v~~Lls  123 (125)
T d1bi7b_          84 TLVVLHRAGARLDVRDAWGRLPVDLAEELGHR----DVARYLRA  123 (125)
T ss_dssp             HHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCH----HHHHHHSS
T ss_pred             ccccccccccccccccCCCCCHHHHHHHcCCH----HHHHHHHh
Confidence            55555555555555555555555555555553    55555543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-25  Score=188.32  Aligned_cols=120  Identities=23%  Similarity=0.222  Sum_probs=114.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCC-CHHHHHHHcCC
Q 013643          277 KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA-TLLHYAVQTAS  355 (439)
Q Consensus       277 g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~-TpLh~A~~~g~  355 (439)
                      +.++||+||..|++++|++|+++|+++|..+..|.|+||+|+ .|+.+++++|+++|++++.++..+. ||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            458999999999999999999999999999999999999775 7999999999999999999988776 69999999999


Q ss_pred             HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 013643          356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI  397 (439)
Q Consensus       356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~  397 (439)
                      .++|++|+++|++++.+|..|+||||+|++.|+.+++++|+.
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999974

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=2.7e-24  Score=202.46  Aligned_cols=194  Identities=16%  Similarity=0.157  Sum_probs=162.2

Q ss_pred             hhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcC---CCcccC
Q 013643          203 VNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKL---PHLATA  273 (439)
Q Consensus       203 l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~---~d~~~~  273 (439)
                      +..+......+..|+||||+|+..|+.+++++|+++|++++..+ ..|.|+++      ..++..++....   ..++..
T Consensus        61 l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~-~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  139 (277)
T d2fo1e1          61 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN-KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL  139 (277)
T ss_dssp             HHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC
T ss_pred             HHcCCCccccCCCCCeeecccccccccccccccccccccccccc-ccccccccchhhhcchhhhhhhhhccccccccccc
Confidence            44455556677899999999999999999999999999999998 89999998      445555554432   355667


Q ss_pred             CCCCchHHHHHHHcCCHH---HHHHHHhCC--------CCCcccCCCCChHHHHHHHcCCHHHHHHHH-HCCCCCCccCC
Q 013643          274 TSKKWLPLHSLAASGEFY---FVDALLKHN--------VDINAVDKDGLTALHKAIIGKKQAVTNYLL-RESANPFVVDE  341 (439)
Q Consensus       274 d~~g~tpLh~Aa~~g~~e---ivk~LL~~g--------adin~~d~~g~t~L~~Aa~~g~~~iv~~LL-~~ga~v~~~d~  341 (439)
                      +..+.++.+.+...+..+   .+..+.+..        ...+..+..|.|+||+++..++.+++++++ ..+.+++.+|.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~  219 (277)
T d2fo1e1         140 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE  219 (277)
T ss_dssp             CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCT
T ss_pred             ccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCC
Confidence            778889999999887543   444444432        223455678999999999999999998755 67889999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 013643          342 DGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI  397 (439)
Q Consensus       342 ~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~  397 (439)
                      .|.||||+|+..|+.++|++|+++|+|+|.+|..|+||||+|++.|+.++|++|++
T Consensus       220 ~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         220 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=5.9e-26  Score=189.25  Aligned_cols=105  Identities=34%  Similarity=0.393  Sum_probs=92.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHH
Q 013643          312 TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDI  391 (439)
Q Consensus       312 t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~ei  391 (439)
                      |||++||..|+.++|++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~   83 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC   83 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhh
Confidence            78888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHH
Q 013643          392 VKLLLIKGADKTLKNRDGLTPLDLC  416 (439)
Q Consensus       392 v~~LL~~Gadi~~~d~~G~TpL~~A  416 (439)
                      |++|+++|+|++.+|.+|.||||+|
T Consensus        84 v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          84 VKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhcccccceeeCCCCCCHHHHH
Confidence            8888888888888888888888877

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.8e-25  Score=201.95  Aligned_cols=170  Identities=21%  Similarity=0.217  Sum_probs=149.2

Q ss_pred             hcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHH
Q 013643          204 NSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHS  283 (439)
Q Consensus       204 ~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~  283 (439)
                      .........+..|+||||+|+..|+.+++++|++.|++++..+                            ..|+|||++
T Consensus        27 ~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d----------------------------~~g~t~l~~   78 (221)
T d1iknd_          27 GDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD----------------------------FRGNTPLHL   78 (221)
T ss_dssp             --CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCC----------------------------TTCCCHHHH
T ss_pred             hCCCCcccCCCCCCccccccccccccccccccccccccccccc----------------------------ccccccccc
Confidence            3444455677889999999999999999999999988776654                            557789999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCc------ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCCHHHHHHHcCCH
Q 013643          284 LAASGEFYFVDALLKHNVDIN------AVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQTASS  356 (439)
Q Consensus       284 Aa~~g~~eivk~LL~~gadin------~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d-~~g~TpLh~A~~~g~~  356 (439)
                      |+..|+.++++.|++.+.+..      .....|.||||.|+..++.+++++|+..|+.++..+ ..|.||||+|+..|+.
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~  158 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP  158 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccH
Confidence            999999999999999876532      334568899999999999999999999999988765 5799999999999999


Q ss_pred             HHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 013643          357 PAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD  401 (439)
Q Consensus       357 ~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gad  401 (439)
                      +++++|+++|+|++.+|..|+||||+|+..++.+++++|++.+.+
T Consensus       159 ~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         159 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            999999999999999999999999999999999999999988765

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.4e-24  Score=182.43  Aligned_cols=103  Identities=28%  Similarity=0.460  Sum_probs=50.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q 013643          313 ALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV  392 (439)
Q Consensus       313 ~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv  392 (439)
                      +|+.||..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.++|
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v   83 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVC   83 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHH
Confidence            44445555555555555555555554444555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHcCCCCCCCC-CCCCCHHHH
Q 013643          393 KLLLIKGADKTLKN-RDGLTPLDL  415 (439)
Q Consensus       393 ~~LL~~Gadi~~~d-~~G~TpL~~  415 (439)
                      ++|+++|||++..+ ..|.||+++
T Consensus        84 ~~Ll~~ga~v~~~~~~~~~~~~~~  107 (130)
T d1ycsb1          84 KFLVESGAAVFAMTYSDMQTAADK  107 (130)
T ss_dssp             HHHHHTTCCTTCCCSSSCCCHHHH
T ss_pred             HHHHHcCCCcccccCCCCCCHHHH
Confidence            55555555554433 234444433

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=2.2e-25  Score=185.75  Aligned_cols=107  Identities=22%  Similarity=0.209  Sum_probs=104.5

Q ss_pred             chHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH
Q 013643          278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSP  357 (439)
Q Consensus       278 ~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~  357 (439)
                      .|||++|+..|+.++|++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCccCCCCCCcHHHHHH
Q 013643          358 AIKILLLYNVDINLQDNDGWTPLHLAV  384 (439)
Q Consensus       358 iV~~Ll~~gadin~~d~~G~TpLh~A~  384 (439)
                      +|++|+++|+|++.+|.+|+||||+|.
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHHh
Confidence            999999999999999999999999983

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-24  Score=183.34  Aligned_cols=121  Identities=22%  Similarity=0.246  Sum_probs=113.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH
Q 013643          279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPA  358 (439)
Q Consensus       279 tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~i  358 (439)
                      +.|+.||..|++++|++|+++|+|+|.+|..|+||||+||..|+.+++++|++.|++++.+|.+|+||||+|+.+|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCccCCC-CCCcHHHHH--HHcCCHHHHHHHHHcC
Q 013643          359 IKILLLYNVDINLQDN-DGWTPLHLA--VQARRTDIVKLLLIKG  399 (439)
Q Consensus       359 V~~Ll~~gadin~~d~-~G~TpLh~A--~~~g~~eiv~~LL~~G  399 (439)
                      |++|+++|++++..+. .|+||++++  ++.|+.+++++|+..+
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            9999999999998775 588987765  5778999999999653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.3e-23  Score=183.92  Aligned_cols=188  Identities=19%  Similarity=0.156  Sum_probs=160.5

Q ss_pred             cCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhh----cCCCcccCC
Q 013643          205 SSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNK----KLPHLATAT  274 (439)
Q Consensus       205 ~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~----~~~d~~~~d  274 (439)
                      .+......+..|+||||+|+..|+.+++++|++.|++.+... ..|.++++      ..+..+....    .....+...
T Consensus        29 ~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (228)
T d1k1aa_          29 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD-RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN  107 (228)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCC
T ss_pred             CCCCCCccCCCCCccceehhcccccccccccccccccccccc-cccccccccccccccccchhhhhhccccccccccccc
Confidence            333445566789999999999999999999999999999888 78888877      2333333332    223344455


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhCCCCCc-ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Q 013643          275 SKKWLPLHSLAASGEFYFVDALLKHNVDIN-AVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQT  353 (439)
Q Consensus       275 ~~g~tpLh~Aa~~g~~eivk~LL~~gadin-~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~  353 (439)
                      ....++|+.+.........+.|.....+.. .....+.++|+.|+..+...+++++++.|..++.+|..|.||||+|+..
T Consensus       108 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~  187 (228)
T d1k1aa_         108 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR  187 (228)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH
T ss_pred             cccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHc
Confidence            667789999999999999999998877644 4456789999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHH
Q 013643          354 ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVK  393 (439)
Q Consensus       354 g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~  393 (439)
                      |+.+++++|+++|+|++.+|.+|+||||+|+++|+.++||
T Consensus       188 g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         188 GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            9999999999999999999999999999999999999985

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.7e-22  Score=174.89  Aligned_cols=123  Identities=23%  Similarity=0.311  Sum_probs=112.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCccc------CCCCChHHHHHHHc---CCHHHHHHHHHCCCCCCccCCCCCCHHHH
Q 013643          279 LPLHSLAASGEFYFVDALLKHNVDINAV------DKDGLTALHKAIIG---KKQAVTNYLLRESANPFVVDEDGATLLHY  349 (439)
Q Consensus       279 tpLh~Aa~~g~~eivk~LL~~gadin~~------d~~g~t~L~~Aa~~---g~~~iv~~LL~~ga~v~~~d~~g~TpLh~  349 (439)
                      ..|+.|++.+++..+..++..|++++..      +..|+||||+|+..   ++.++|++|+++|++++.+|..|.||||+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            3577889999999999999999887654      66789999999974   67899999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 013643          350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD  401 (439)
Q Consensus       350 A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gad  401 (439)
                      |+..|+.++|++|+++|++++.+|..|+||||+|++.|+.+++++|++.++.
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999999987764

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=4.4e-22  Score=173.56  Aligned_cols=120  Identities=24%  Similarity=0.257  Sum_probs=109.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCcc------CCCCCCHHHHHHHc---CCHHHHHHHHhCCCCCccCCCCCCcHHHHH
Q 013643          313 ALHKAIIGKKQAVTNYLLRESANPFVV------DEDGATLLHYAVQT---ASSPAIKILLLYNVDINLQDNDGWTPLHLA  383 (439)
Q Consensus       313 ~L~~Aa~~g~~~iv~~LL~~ga~v~~~------d~~g~TpLh~A~~~---g~~~iV~~Ll~~gadin~~d~~G~TpLh~A  383 (439)
                      .|..|+..++...+..++..|++++..      +..|.||||+|+..   |+.++|++|+++|+++|.+|..|+||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            466788999999999999999887754      66899999999975   678999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643          384 VQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP  436 (439)
Q Consensus       384 ~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~  436 (439)
                      +..|+.+++++|+++|+|++.+|..|+||||+|++.|+.    +|+++|++..
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~----~i~~~L~~~~  137 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE----HCEELLTQAL  137 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHHH
T ss_pred             cccccccccccccccCccccccCCCCCCHHHHHHHcCCH----HHHHHHHHhC
Confidence            999999999999999999999999999999999999996    8888888743

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.86  E-value=1.2e-24  Score=214.51  Aligned_cols=163  Identities=12%  Similarity=0.050  Sum_probs=130.4

Q ss_pred             hcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHH---HHhCCC
Q 013643          225 GRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDA---LLKHNV  301 (439)
Q Consensus       225 ~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~---LL~~ga  301 (439)
                      ..+..++.+++...+++.+... ....                .+++..+..|.||||+||.+|+.+++++   |++.|+
T Consensus        55 ~~~~~~~~~~l~~~~~~~~~~~-~~~~----------------~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~  117 (346)
T d2ajaa1          55 TKNMEQVRQLLCLYYAHYNRNA-KQLW----------------SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDE  117 (346)
T ss_dssp             SSHHHHHHHHHHHHHHHTTTTC-TTHH----------------HHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCS
T ss_pred             hccHHHHHHHHHHcchhhccch-hhhh----------------hHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence            3445667777777766665444 1111                1233457788999999999999887765   789999


Q ss_pred             CCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC--CCCCCHHHHHHHcCCHHHHHHHHhCCCCC---ccCCCCC
Q 013643          302 DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD--EDGATLLHYAVQTASSPAIKILLLYNVDI---NLQDNDG  376 (439)
Q Consensus       302 din~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d--~~g~TpLh~A~~~g~~~iV~~Ll~~gadi---n~~d~~G  376 (439)
                      ++|.++..|+||||+||..|+.++|++|+++|++++..+  .+|.||||+|+.+|+.++|++|++.|++.   +..+..|
T Consensus       118 ~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~  197 (346)
T d2ajaa1         118 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY  197 (346)
T ss_dssp             SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             cccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCC
Confidence            999999999999999999999999999999999998765  46999999999999999999999999765   3344567


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 013643          377 WTPLHLAVQARRTDIVKLLLIKGADKTL  404 (439)
Q Consensus       377 ~TpLh~A~~~g~~eiv~~LL~~Gadi~~  404 (439)
                      .||+++|+++|+.++|++|+++|++++.
T Consensus       198 ~t~l~~A~~~g~~~iv~~Ll~~ga~~~~  225 (346)
T d2ajaa1         198 YAFRWAAVGRGHHNVINFLLDCPVMLAY  225 (346)
T ss_dssp             HHHHHHHSTTCCHHHHHHHTTSHHHHHH
T ss_pred             cchhhHHhhcCHHHHHHHHHhCCCCcch
Confidence            7888899999999999999999987653

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3.3e-21  Score=185.59  Aligned_cols=169  Identities=14%  Similarity=0.148  Sum_probs=115.6

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHH----------HHHHhhcCCCcccCCCCCchHHH
Q 013643          213 RVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEE----------KVLLNKKLPHLATATSKKWLPLH  282 (439)
Q Consensus       213 ~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~----------~~lL~~~~~d~~~~d~~g~tpLh  282 (439)
                      +..|+||||+|+..|+.+++++|++.|++++..+ ..|+||||....          ..++......+...|..|+||||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d-~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh  182 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD-NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH  182 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCC-TTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCC-cccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHH
Confidence            5679999999999999999999999999999998 889999982110          12222223456667888999999


Q ss_pred             HHHHcCC----HH--------HHHHHHhCCCC-CcccCCCCChHHHHHHHcCCHHHHH-----HHHHCCCCCCccCCCCC
Q 013643          283 SLAASGE----FY--------FVDALLKHNVD-INAVDKDGLTALHKAIIGKKQAVTN-----YLLRESANPFVVDEDGA  344 (439)
Q Consensus       283 ~Aa~~g~----~e--------ivk~LL~~gad-in~~d~~g~t~L~~Aa~~g~~~iv~-----~LL~~ga~v~~~d~~g~  344 (439)
                      +++..+.    ..        ++.++++.+.. .......+.++++.+.......++.     .++..  .+|.+|..|+
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~in~~D~~G~  260 (301)
T d1sw6a_         183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN--MLNAQDSNGD  260 (301)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH--TTTCCCTTSC
T ss_pred             HHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc--CccCCCCCCC
Confidence            8886543    22        33444555433 2333444556666555444433332     22332  3678999999


Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHH
Q 013643          345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAV  384 (439)
Q Consensus       345 TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~  384 (439)
                      ||||+|++.|+.++|++|+++|+|++.+|..|+|||++|+
T Consensus       261 TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         261 TCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            9999999999999999999999999999999999999985

>d2d6fa2 c.88.1.1 (A:84-435) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Glutaminase/Asparaginase
superfamily: Glutaminase/Asparaginase
family: Glutaminase/Asparaginase
domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.55  E-value=1.3e-09  Score=105.73  Aligned_cols=73  Identities=16%  Similarity=0.175  Sum_probs=67.2

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL  169 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l  169 (439)
                      .+|+|+++||+||+|++|.+.+++        |.+|||..|.|. ..|+.|..+.+  .|+|+++|||+       |++.
T Consensus       243 ~~GiVl~g~G~Gnvp~~~~~~l~~a~~~gi~VV~~Sqc~~G~v~~~~Y~~g~~l~~--~GvI~~gdlt~-------ekA~  313 (352)
T d2d6fa2         243 YRGIVIEGTGLGHCPDTLIPVIGEAHDMGVPVAMTSQCLNGRVNMNVYSTGRRLLQ--AGVIPCDDMLP-------EVAY  313 (352)
T ss_dssp             CSEEEEEEBTTTBCCGGGHHHHHHHHHTTCCEEEEETTCBSCCCTTSSHHHHHHHH--TTCEECTTCCH-------HHHH
T ss_pred             CcEEEEEEEcCCCcchhHHHHHHHHHhcCCeEEEecccCCCccccccccchHHHHh--CCEEECCCCCH-------HHHH
Confidence            599999999999999999888877        899999999885 55999999999  99999999999       9999


Q ss_pred             hccCCCcccCCCC
Q 013643          170 SQLNPPLVLDKPS  182 (439)
Q Consensus       170 ~~l~p~~~l~~~~  182 (439)
                      .+|+  ++|++..
T Consensus       314 vkL~--~lL~~~~  324 (352)
T d2d6fa2         314 VKMC--WVLGQTD  324 (352)
T ss_dssp             HHHH--HHTTTCC
T ss_pred             HHHH--HHHcCCC
Confidence            9999  9999864

>d1zq1a2 c.88.1.1 (A:76-438) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: Glutaminase/Asparaginase
superfamily: Glutaminase/Asparaginase
family: Glutaminase/Asparaginase
domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.55  E-value=1.8e-09  Score=104.92  Aligned_cols=73  Identities=16%  Similarity=0.127  Sum_probs=66.9

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL  169 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l  169 (439)
                      .+|+|+++||+||+|.+|.+.+++        |++|||..|.|. ..|+.|..+.+  .|+|++++||+       |++.
T Consensus       254 ~~GiVl~g~G~Gnvp~~~~~~l~~a~~~gi~VV~~Sqc~~G~v~~~~Y~~g~~l~~--~GvI~~gdlt~-------ekAr  324 (363)
T d1zq1a2         254 YKGIVIEGTGLGHTPNDIIPSIERAVEEGVAVCMTSQCIYGRVNLNVYSTGRKLLK--AGVIPCEDMLP-------ETAY  324 (363)
T ss_dssp             CSEEEEEEBTTTBCCGGGHHHHHHHHHTTCEEEEEESSSBSCCCCSSSHHHHHHHH--TTCEECTTCCH-------HHHH
T ss_pred             CceEEEEeecCCCCchHHHHHHHHHHhCCceEEEecCCCCCCcCCCcccchHHHHh--CCEEECCCCCH-------HHHH
Confidence            599999999999999999888777        889999999885 55999999998  99999999999       9999


Q ss_pred             hccCCCcccCCCC
Q 013643          170 SQLNPPLVLDKPS  182 (439)
Q Consensus       170 ~~l~p~~~l~~~~  182 (439)
                      .+|+  ++|++..
T Consensus       325 ikLm--~lL~~~~  335 (363)
T d1zq1a2         325 VKLM--WVLGHTQ  335 (363)
T ss_dssp             HHHH--HHHTTCC
T ss_pred             HHHH--HHHcCCC
Confidence            9999  9999754

>d2ocda1 c.88.1.1 (A:2-337) Asparaginase type II {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Glutaminase/Asparaginase
superfamily: Glutaminase/Asparaginase
family: Glutaminase/Asparaginase
domain: Asparaginase type II
species: Vibrio cholerae [TaxId: 666]

Probab=98.25  E-value=1.8e-08  Score=97.05  Aligned_cols=73  Identities=15%  Similarity=0.150  Sum_probs=60.1

Q ss_pred             CCcccccccccCCCch--hHHHHHHH--------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHh
Q 013643           99 GKQNVVQVEAENLVPD--KWKQVQEE--------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEA  167 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~--~~~~~~~~--------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~  167 (439)
                      .+|+|+++||+||+|.  .|.+.+++        |.+|||..|.|. ..|+.|..+.+  .|+|++++||+       |+
T Consensus       234 ~~GiVL~~~G~Gn~p~~~~~~~~l~~a~~~gi~VV~~Src~~G~v~~~~Y~~g~~l~~--~GvI~~~~lt~-------ek  304 (336)
T d2ocda1         234 VNAMILLTFGVGNAPQNPELLAQLKAASERGVIVVNLTQCLAGKVNMGGYATGCALAD--AGVISGYDMTP-------EA  304 (336)
T ss_dssp             CCEEEEEEBTTTBCCCCHHHHHHHHHHHHTTCEEEEEESSSEECCCCCC----CHHHH--HTCEECTTCCH-------HH
T ss_pred             CCceEEEEecCCCCcCCHHHHHHHHHHHhcCCEEEEecccCCCccccccccchHHHHh--CCEEECCCCCH-------HH
Confidence            4899999999999995  46666665        779999999885 56999999988  99999999999       99


Q ss_pred             hhhccCCCcccCCCC
Q 013643          168 KLSQLNPPLVLDKPS  182 (439)
Q Consensus       168 ~l~~l~p~~~l~~~~  182 (439)
                      +..+|+  ++|++..
T Consensus       305 ArvkL~--~~L~~~~  317 (336)
T d2ocda1         305 ALAKLH--YLLSQNL  317 (336)
T ss_dssp             HHHHHH--HHHHTCC
T ss_pred             HHHHHH--HHHcCCC
Confidence            999999  9999753

>d1wsaa_ c.88.1.1 (A:) Asparaginase type II {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Glutaminase/Asparaginase
superfamily: Glutaminase/Asparaginase
family: Glutaminase/Asparaginase
domain: Asparaginase type II
species: Wolinella succinogenes [TaxId: 844]

Probab=98.21  E-value=5.8e-08  Score=93.00  Aligned_cols=70  Identities=14%  Similarity=0.059  Sum_probs=60.4

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLS  170 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l~  170 (439)
                      .+|+|+++||.||+|..|.+.+++        |++|||..|.+...+  +..+.+  .|+|++++||+       |++..
T Consensus       238 ~~GiVl~g~G~Gnvp~~~~~~l~~a~~~gi~Vv~~Sqc~~G~v~~~~--~~~~~~--~GvI~~gdlt~-------ekA~v  306 (328)
T d1wsaa_         238 AKGIIHAGMGNGNPFPLTQNALEKAAKSGVVVARSSRVGSGSTTQEA--EVDDKK--LGFVATESLNP-------QKARV  306 (328)
T ss_dssp             CSEEEEEEBTTTBCCHHHHHHHHHHHHTTCEEEEEESSSSSCBCSSS--SSCHHH--HTEEECBSCCH-------HHHHH
T ss_pred             CcEEEEEcccCCCCCHHHHHHHHHHHhcCcEEEEEEeCCCCccCccc--ccChhh--CCEEECCCCCH-------HHHHH
Confidence            699999999999999999888877        889999999875443  334445  89999999999       99999


Q ss_pred             ccCCCcccCCC
Q 013643          171 QLNPPLVLDKP  181 (439)
Q Consensus       171 ~l~p~~~l~~~  181 (439)
                      +|+  ++|++.
T Consensus       307 kL~--~~L~~~  315 (328)
T d1wsaa_         307 LLM--LALTKT  315 (328)
T ss_dssp             HHH--HHHTTC
T ss_pred             HHH--HHHcCC
Confidence            999  999875

>d1nnsa_ c.88.1.1 (A:) Asparaginase type II {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Glutaminase/Asparaginase
superfamily: Glutaminase/Asparaginase
family: Glutaminase/Asparaginase
domain: Asparaginase type II
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=4e-08  Score=94.02  Aligned_cols=70  Identities=10%  Similarity=0.019  Sum_probs=61.0

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLS  170 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l~  170 (439)
                      .+|+|+++||+||+|+.|.+.+++        |++|||..|.+...  .+..+.+  .|+|++++||+       |++..
T Consensus       236 ~~GiVl~g~G~Gnvp~~~~~~l~~a~~~gi~VV~~sqc~~G~v~~~--~~~~l~~--~GvI~~gdmt~-------ekA~i  304 (326)
T d1nnsa_         236 YDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQD--AEVDDAK--YGFVASGTLNP-------QKARV  304 (326)
T ss_dssp             CSEEEEEEBTTTBCCHHHHHHHHHHHHTTCEEEEEESSSSSCBCSS--SSSCHHH--HTEEECBTCCH-------HHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEecCCceeECcc--ccccccc--CCEEECCCCCH-------HHHHH
Confidence            599999999999999999888877        89999999977543  3444556  99999999999       99999


Q ss_pred             ccCCCcccCCC
Q 013643          171 QLNPPLVLDKP  181 (439)
Q Consensus       171 ~l~p~~~l~~~  181 (439)
                      +|+  ++|++.
T Consensus       305 kL~--~~L~~~  313 (326)
T d1nnsa_         305 LLQ--LALTQT  313 (326)
T ss_dssp             HHH--HHTTTC
T ss_pred             HHH--HHHhCC
Confidence            999  999885

>d1o7ja_ c.88.1.1 (A:) Asparaginase type II {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: Glutaminase/Asparaginase
superfamily: Glutaminase/Asparaginase
family: Glutaminase/Asparaginase
domain: Asparaginase type II
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.92  E-value=1.4e-07  Score=90.27  Aligned_cols=66  Identities=17%  Similarity=0.000  Sum_probs=57.4

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLS  170 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l~  170 (439)
                      .+|+|+++||+||+|++|.+.+++        |.+|||..|.|...|         +.|.|++++||+       |++..
T Consensus       240 ~~GiVl~g~G~Gnvp~~~~~~l~~a~~~gipVV~~Sqc~~G~v~~~~---------~~g~i~~g~ltp-------ekA~i  303 (325)
T d1o7ja_         240 VKGIVYAGMGAGSVSVRGIAGMRKALEKGVVVMRSTRTGNGIVPPDE---------ELPGLVSDSLNP-------AHARI  303 (325)
T ss_dssp             CSEEEEEEBTTTBCCHHHHHHHHHHHHTTCEEEEEESSSBSCBCCCT---------TSSSEECBTCCH-------HHHHH
T ss_pred             CCEEEEeeeCCCCCCHHHHHHHHHHHhCCCEEEEEEecCCCccCccc---------ccCeeECCCCCH-------HHHHH
Confidence            699999999999999988887777        889999999875443         278899999999       99999


Q ss_pred             ccCCCcccCCCC
Q 013643          171 QLNPPLVLDKPS  182 (439)
Q Consensus       171 ~l~p~~~l~~~~  182 (439)
                      +|+  ++|++..
T Consensus       304 kL~--~~L~~~~  313 (325)
T d1o7ja_         304 LLM--LALTRTS  313 (325)
T ss_dssp             HHH--HHTTTCC
T ss_pred             HHH--HHHhCCC
Confidence            999  9998753

>d4pgaa_ c.88.1.1 (A:) Glutaminase-asparaginase {Pseudomonas sp., 7A [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Glutaminase/Asparaginase
superfamily: Glutaminase/Asparaginase
family: Glutaminase/Asparaginase
domain: Glutaminase-asparaginase
species: Pseudomonas sp., 7A [TaxId: 306]

Probab=97.91  E-value=1.6e-07  Score=89.92  Aligned_cols=70  Identities=10%  Similarity=0.079  Sum_probs=60.2

Q ss_pred             CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL  169 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l  169 (439)
                      .+|+|+++||.||+|++|.+.+++        |.+|||..|.|. ..|+.+  +.+  .|+|+++|||+       |++.
T Consensus       239 ~~GiVl~g~G~G~~p~~~~~~l~~~~~~gi~VV~~Sqc~~G~v~~~~~~~~--~~~--~GvI~~gdmtp-------ekAr  307 (330)
T d4pgaa_         239 AKALIHAGTGNGSVSSRVVPALQQLRKNGTQIIRSSHVNQGGFVLRNAEQP--DDK--NDWVVAHDLNP-------EKAR  307 (330)
T ss_dssp             CSEEEEEEBTTTBCCTTTHHHHHHHHHTTCEEEEEESCCSBCCCCTTTSSC--HHH--HTCEECTTCCH-------HHHH
T ss_pred             CCEEEEeccCCCCCCHHHHHHHHHHHHCCCEEEEEeecCCCcccccccccc--hhh--CCEEECCCCCH-------HHHH
Confidence            699999999999999999888877        999999999764 334433  455  99999999999       9999


Q ss_pred             hccCCCcccCCC
Q 013643          170 SQLNPPLVLDKP  181 (439)
Q Consensus       170 ~~l~p~~~l~~~  181 (439)
                      .+|+  ++|++.
T Consensus       308 ikL~--~~L~~~  317 (330)
T d4pgaa_         308 ILAM--VAMTKT  317 (330)
T ss_dssp             HHHH--HHTTTC
T ss_pred             HHHH--HHHcCC
Confidence            9999  999875

>d1agxa_ c.88.1.1 (A:) Glutaminase-asparaginase {Acinetobacter glutaminasificans [TaxId: 474]}

class: Alpha and beta proteins (a/b)
fold: Glutaminase/Asparaginase
superfamily: Glutaminase/Asparaginase
family: Glutaminase/Asparaginase
domain: Glutaminase-asparaginase
species: Acinetobacter glutaminasificans [TaxId: 474]

Probab=97.90  E-value=2.3e-07  Score=88.93  Aligned_cols=70  Identities=10%  Similarity=0.084  Sum_probs=57.6

Q ss_pred             CCcccccccccCCCchhHHHHHHH---------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643           99 GKQNVVQVEAENLVPDKWKQVQEE---------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL  169 (439)
Q Consensus        99 ~~~~~~~~~g~~~~p~~~~~~~~~---------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l  169 (439)
                      .+|+|+++||.||+|+.|.+.+++         |.+|||..|.|...  .+..+.+  .|+|+++||++       |++.
T Consensus       240 ~~GiVl~g~G~G~vp~~~~~~l~~~~~~~gi~VV~~Sqc~~G~v~~~--~~~~~~~--~GvI~~gdmtp-------e~A~  308 (331)
T d1agxa_         240 VKAIIHAGTGNGSMANYLVPEVRKLHDEQGLQIVRSSRVAQGFVLRN--AEQPDDK--YGWIAAHDLNP-------QKAR  308 (331)
T ss_dssp             CSEEEEEEBTTTBCCTTHHHHHHHHHHTTCCEEEEEESSCSSCBCTT--TSSCHHH--HTCEECBTCCH-------HHHH
T ss_pred             CcEEEEeccCCCCCCHHHHHHHHHHHHhCCeEEEEEEeCCCceeCcC--ccccccc--CCEEECCCCCH-------HHHH
Confidence            599999999999999887655544         78999999977533  2344555  89999999999       9999


Q ss_pred             hccCCCcccCCC
Q 013643          170 SQLNPPLVLDKP  181 (439)
Q Consensus       170 ~~l~p~~~l~~~  181 (439)
                      .+|+  ++|++.
T Consensus       309 ikL~--~~L~~~  318 (331)
T d1agxa_         309 LLMA--LALTKT  318 (331)
T ss_dssp             HHHH--HHTTTC
T ss_pred             HHHH--HHHhCC
Confidence            9999  998864