Citrus Sinensis ID: 013658


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
MGSALRNDKRGFRALFVPLFLAFFFVQNFALVSSLNYTKYRQVSSLRLERIQKHLQKINKPPVMTIESPDGDIIDCVHKRRQPALDHPLLKNHKIQRVPSQMPKMKKALKEDEASSERNNERVIIEGAWQMWHRNGTRCPKGTVPIRRSTEHDVLRAKSLFDFGKKQHRRIPLHRRADAPDVVSGNGHEHAIAYTGSSQEVYGARATINVWDPSIQVVNEFSLSQIWVLSGSFDGSDLNSIEAGWQVSPELYGDSRPRLFTYWTSDSYQATGCYNLLCAGFIQTNSRIAIGAAISPISTYAGNQFDITILIWKDPKLGNWWMGFGENLLVGYWPAELFTHLADHATMVEWGGEVVNSRANGEHTSTQMGSGHFAEDGFGKASYFRNLEIVDSDNSLSSVRDISILAENTNCYNIKNSYNNEWGTHFYYGGPGRNPQCP
cccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEcccccHHHHHHHHHHHHHHccccEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEEEEEcccccccccccEEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEEEccccccccccccccEEEEccccccccccccccccccccEEEEEEEEEEccccccEEEEcccccEEEEEcHHHHHHcccccEEEEEEEEEEccccccccccccccccccccccccccEEEEEEEEEccccccccccccEEEccccccEEEEcccccccccEEEEEccccccccc
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEEEcccccEEEEEccccccccccccccccEEEEcccccccccccccccccccccccccccccccEEEEEccccccccccEEEEEccHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEccccEEEEEEEEEEccccccccccccHcEEEEEccccccccccEEEEEEEEcHHHccccccEEEEEEEcccccccccEccccccEEEEcccEEEccEEcccccccccEEEEEEEEEEccccccEEEEEcccEEEEcccHHHHHHHHccccEEEEccEEEcccccccccccccccccccccccccEEEEEEEEEEccccccccHHHcEEEccccccEEEEccccccccEEEEEcccccccccc
mgsalrndkrgfrALFVPLFLAFFFVQNFALVSSLNYTKYRQVSSLRLERIQKHLQkinkppvmtiespdgdiidcvhkrrqpaldhpllknhkiqrvpsqmpKMKKALKEdeassernnERVIIEGAWQMwhrngtrcpkgtvpirrstehDVLRAKSLFDfgkkqhrriplhrradapdvvsgnghEHAIAytgssqevygaratinvwdpsiqvVNEFSLSQIWVLsgsfdgsdlnsieagwqvspelygdsrprlftywtsdsyqatgcYNLLCAGFIQTNSRIAIGaaispistyagnqfdITILIwkdpklgnwwmgfgenllvgywpaeLFTHLADHATMVEWGGEVvnsrangehtstqmgsghfaedgfgkasyfrnleivdsdnslssvrDISILAentncyniknsynnewgthfyyggpgrnpqcp
mgsalrndkrgfRALFVPLFLAFFFVQNFALVSSLNYTKYRQVSSLRLERIQKHlqkinkppvmtiesPDGDIIDCVHKRRqpaldhpllknhkiqrvpsqmpkMKKALkedeassernneRVIIEgawqmwhrngtrcpkgtvpirrstehDVLRAKslfdfgkkqhrriplhrradapdvvsgNGHEHAIAYTGSSQEVYGARATINVWDPSIQVVNEFSLSQIWVLSGSFDGSDLNSIEAGWQVSPELYGDSRPRLFTYWTSDSYQATGCYNLLCAGFIQTNSRIAIGAAISPISTYAGNQFDITILIWKDPKLGNWWMGFGENLLVGYWPAELFTHLADHATMVEWGGEVVNSRANGEHTSTQMGSGHFAEDGFGKASYFRNLEIvdsdnslssvRDISILAENTNCYNIKNSYNNEWGTHFYYggpgrnpqcp
MGSALRNDKRGfralfvplflafffvQNFALVSSLNYTKYRQVSSLRLERIQKHLQKINKPPVMTIESPDGDIIDCVHKRRQPALDHPLLKNHKIQRVPSQMPKMKKALKEDEASSERNNERVIIEGAWQMWHRNGTRCPKGTVPIRRSTEHDVLRAKSLFDFGKKQHRRIPLHRRADAPDVVSGNGHEHAIAYTGSSQEVYGARATINVWDPSIQVVNEFSLSQIWVLSGSFDGSDLNSIEAGWQVSPELYGDSRPRLFTYWTSDSYQATGCYNLLCAGFIQTNSRIAIGAAISPISTYAGNQFDITILIWKDPKLGNWWMGFGENLLVGYWPAELFTHLADHATMVEWGGEVVNSRANGEHTSTQMGSGHFAEDGFGKASYFRNLEIVDSDNSLSSVRDISILAENTNCYNIKNSYNNEWGTHFYYGGPGRNPQCP
**********GFRALFVPLFLAFFFVQNFALVSSLNYTKYRQVSSLRLERIQKHLQKINKPPVMTIE*PDGDIIDCVHK******************************************RVIIEGAWQMWHRNGTRCPKGTVPIRRSTEHDVLRAKSLFDFGK*****************V**NGHEHAIAYTGSSQEVYGARATINVWDPSIQVVNEFSLSQIWVLSGSFDGSDLNSIEAGWQVSPELYGDSRPRLFTYWTSDSYQATGCYNLLCAGFIQTNSRIAIGAAISPISTYAGNQFDITILIWKDPKLGNWWMGFGENLLVGYWPAELFTHLADHATMVEWGGEVVN****************FAEDGFGKASYFRNLEIVDSDNSLSSVRDISILAENTNCYNIKNSYNNEWGTHFYYG*********
*************ALFVPLFLAFFFVQNFALVSSL*******************LQKINKPPVMTIESPDGDIIDCVHKRRQPALDHPLLKN**************************************MWH**GTRCPKGTVP*************************************VSGNGHEHAIAYTGSSQEVYGARATINVWDPSIQVVNEFSLSQIWVLSGSFDGSDLNSIEAGWQVSPELYGDSRPRLFTYWTSDSYQATGCYNLLCAGFIQTNSRIAIGAAISPISTYAGNQFDITILIWKDPKLGNWWMGFGENLLVGYWPAELFTHLADHATMVEWGGEVVNSRA********M*SGHFAEDGFGKASYFRNLEIVDSDNSLSSVRDISILAENTNCYNIKNSYNNEWGTHFYYGGPGRN****
********KRGFRALFVPLFLAFFFVQNFALVSSLNYTKYRQVSSLRLERIQKHLQKINKPPVMTIESPDGDIIDCVHKRRQPALDHPLLKNHKIQRVPS*******************NERVIIEGAWQMWHRNGTRCPKGTVPIRRSTEHDVLRAKSLFDFGKKQHRRIPLHRRADAPDVVSGNGHEHAIAYTGSSQEVYGARATINVWDPSIQVVNEFSLSQIWVLSGSFDGSDLNSIEAGWQVSPELYGDSRPRLFTYWTSDSYQATGCYNLLCAGFIQTNSRIAIGAAISPISTYAGNQFDITILIWKDPKLGNWWMGFGENLLVGYWPAELFTHLADHATMVEWGGEVVNSRANGEHTSTQMGSGHFAEDGFGKASYFRNLEIVDSDNSLSSVRDISILAENTNCYNIKNSYNNEWGTHFYYGGPGRNPQCP
**********GFRALFVPLFLAFFFVQNFALVSSLNYTKYRQVSSLRLERIQKHLQKINKPPVMTIESPDGDIIDCVHKRRQPALDHPLLKNHKIQRVPSQM***********************EGAWQMWHRNGTRCPKGTVPIRRSTEHDVLRAKSLFDFGKKQH***************SGNGHEHAIAYTGSSQEVYGARATINVWDPSIQVVNEFSLSQIWVLSGSFDGSDLNSIEAGWQVSPELYGDSRPRLFTYWTSDSYQATGCYNLLCAGFIQTNSRIAIGAAISPISTYAGNQFDITILIWKDPKLGNWWMGFGENLLVGYWPAELFTHLADHATMVEWGGEVVNSRANGEHTSTQMGSGHFAEDGFGKASYFRNLEIVDSDNSLSSVRDISILAENTNCYNIKNSYNNEWGTHFYYGGPGRNPQCP
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSALRNDKRGFRALFVPLFLAFFFVQNFALVSSLNYTKYRQVSSLRLERIQKHLQKINKPPVMTIESPDGDIIDCVHKRRQPALDHPLLKNHKIQRVPSQMPKMKKALKEDEASSERNNERVIIEGAWQMWHRNGTRCPKGTVPIRRSTEHDVLRAKSLFDFGKKQHRRIPLHRRADAPDVVSGNGHEHAIAYTGSSQEVYGARATINVWDPSIQVVNEFSLSQIWVLSGSFDGSDLNSIEAGWQVSPELYGDSRPRLFTYWTSDSYQATGCYNLLCAGFIQTNSRIAIGAAISPISTYAGNQFDITILIWKDPKLGNWWMGFGENLLVGYWPAELFTHLADHATMVEWGGEVVNSRANGEHTSTQMGSGHFAEDGFGKASYFRNLEIVDSDNSLSSVRDISILAENTNCYNIKNSYNNEWGTHFYYGGPGRNPQCP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query438
255562015439 conserved hypothetical protein [Ricinus 0.949 0.947 0.85 0.0
359476527420 PREDICTED: uncharacterized protein LOC10 0.940 0.980 0.819 0.0
224125768418 predicted protein [Populus trichocarpa] 0.897 0.940 0.838 0.0
224145866396 predicted protein [Populus trichocarpa] 0.897 0.992 0.851 0.0
356574863429 PREDICTED: uncharacterized protein LOC10 0.956 0.976 0.777 0.0
296085155403 unnamed protein product [Vitis vinifera] 0.894 0.972 0.834 0.0
357441285451 hypothetical protein MTR_1g079730 [Medic 0.956 0.929 0.770 0.0
356504131418 PREDICTED: uncharacterized protein LOC10 0.901 0.944 0.812 0.0
449479712439 PREDICTED: uncharacterized LOC101208882 0.958 0.956 0.785 0.0
356571202439 PREDICTED: uncharacterized protein LOC10 0.940 0.938 0.780 0.0
>gi|255562015|ref|XP_002522016.1| conserved hypothetical protein [Ricinus communis] gi|223538820|gb|EEF40420.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/420 (85%), Positives = 379/420 (90%), Gaps = 4/420 (0%)

Query: 22  AFFFVQNFALVSSLNYTKYRQVSSLRLERIQKHLQKINKPPVMTIESPDGDIIDCVHKRR 81
                +   LVSSLNYT YRQVSSLRL+RIQ+HL KINKPPVMT++SPDGD IDCVHKR+
Sbjct: 21  VIVLFERVTLVSSLNYTNYRQVSSLRLQRIQRHLDKINKPPVMTVQSPDGDTIDCVHKRK 80

Query: 82  QPALDHPLLKNHKIQRVPSQMPKMKKALKEDEASSER--NNERVIIEGAWQMWHRNGTRC 139
           QPALDHPLLKNHKIQRVPS+ PK+++ LKE+E    +   N      GAWQMWHRNGTRC
Sbjct: 81  QPALDHPLLKNHKIQRVPSEWPKVRE-LKEEEVKDPKFKGNSAEGERGAWQMWHRNGTRC 139

Query: 140 PKGTVPIRRSTEHDVLRAKSLFDFGKKQ-HRRIPLHRRADAPDVVSGNGHEHAIAYTGSS 198
           PKGTVPIRRS  HDVLRA SLFDFGKKQ HR I L RR D PDVVSGNGHEHAIAYTGSS
Sbjct: 140 PKGTVPIRRSKMHDVLRANSLFDFGKKQQHRSISLARRTDPPDVVSGNGHEHAIAYTGSS 199

Query: 199 QEVYGARATINVWDPSIQVVNEFSLSQIWVLSGSFDGSDLNSIEAGWQVSPELYGDSRPR 258
           QEVYGA+ATINVWDPS+QVVNEFSLSQIW+LSGSFDGSDLNSIEAGWQVSPELYGDSRPR
Sbjct: 200 QEVYGAKATINVWDPSVQVVNEFSLSQIWILSGSFDGSDLNSIEAGWQVSPELYGDSRPR 259

Query: 259 LFTYWTSDSYQATGCYNLLCAGFIQTNSRIAIGAAISPISTYAGNQFDITILIWKDPKLG 318
           LFTYWTSDSYQATGCYNLLCAGF+QTNSRIAIGAAISP+S Y GNQFDITILIWKDPKLG
Sbjct: 260 LFTYWTSDSYQATGCYNLLCAGFVQTNSRIAIGAAISPVSFYGGNQFDITILIWKDPKLG 319

Query: 319 NWWMGFGENLLVGYWPAELFTHLADHATMVEWGGEVVNSRANGEHTSTQMGSGHFAEDGF 378
           NWWMGFG+N LVGYWPAELFTHLADHATMVEWGGEVVNSRANG HTSTQMGSGHFAEDGF
Sbjct: 320 NWWMGFGDNTLVGYWPAELFTHLADHATMVEWGGEVVNSRANGAHTSTQMGSGHFAEDGF 379

Query: 379 GKASYFRNLEIVDSDNSLSSVRDISILAENTNCYNIKNSYNNEWGTHFYYGGPGRNPQCP 438
           GKASYFRNLEIVDSDNSL+S +DISILAENTNCYNIK+SYNNEWGT+FYYGGPG NPQCP
Sbjct: 380 GKASYFRNLEIVDSDNSLTSAQDISILAENTNCYNIKSSYNNEWGTYFYYGGPGNNPQCP 439




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476527|ref|XP_002267432.2| PREDICTED: uncharacterized protein LOC100253635 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224125768|ref|XP_002319670.1| predicted protein [Populus trichocarpa] gi|222858046|gb|EEE95593.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224145866|ref|XP_002325792.1| predicted protein [Populus trichocarpa] gi|222862667|gb|EEF00174.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356574863|ref|XP_003555563.1| PREDICTED: uncharacterized protein LOC100808774 [Glycine max] Back     alignment and taxonomy information
>gi|296085155|emb|CBI28650.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357441285|ref|XP_003590920.1| hypothetical protein MTR_1g079730 [Medicago truncatula] gi|355479968|gb|AES61171.1| hypothetical protein MTR_1g079730 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356504131|ref|XP_003520852.1| PREDICTED: uncharacterized protein LOC100805566 [Glycine max] Back     alignment and taxonomy information
>gi|449479712|ref|XP_004155685.1| PREDICTED: uncharacterized LOC101208882 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356571202|ref|XP_003553768.1| PREDICTED: uncharacterized protein LOC100789333 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query438
TAIR|locus:2146258430 AT5G18460 [Arabidopsis thalian 0.910 0.927 0.769 3.1e-177
TAIR|locus:2092870419 AT3G13510 [Arabidopsis thalian 0.881 0.921 0.577 1.9e-131
TAIR|locus:2035666422 AT1G55360 [Arabidopsis thalian 0.901 0.936 0.566 2.2e-130
TAIR|locus:2167121420 AT5G56530 "AT5G56530" [Arabido 0.878 0.916 0.579 1.5e-129
TAIR|locus:2050487445 AT2G44210 [Arabidopsis thalian 0.833 0.820 0.554 2.4e-123
TAIR|locus:2019933467 AT1G10750 [Arabidopsis thalian 0.801 0.751 0.572 8.4e-113
TAIR|locus:2028025409 AT1G23340 "AT1G23340" [Arabido 0.899 0.963 0.512 8.7e-111
TAIR|locus:2100434373 AT3G48230 "AT3G48230" [Arabido 0.684 0.804 0.538 1.9e-110
TAIR|locus:2170091420 AT5G50150 "AT5G50150" [Arabido 0.710 0.740 0.607 7.8e-110
TAIR|locus:2026815465 AT1G70550 [Arabidopsis thalian 0.680 0.640 0.618 2.4e-108
TAIR|locus:2146258 AT5G18460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1721 (610.9 bits), Expect = 3.1e-177, P = 3.1e-177
 Identities = 313/407 (76%), Positives = 356/407 (87%)

Query:    32 VSSLNYTK-YRQVSSLRLERIQKHLQKINKPPVMTIESPDGDIIDCVHKRRQPALDHPLL 90
             +S+ N TK YRQVSSLRL RIQKHL KINK PV TI+SPDGD+IDCV KR+QPALDHPLL
Sbjct:    30 ISAFNDTKPYRQVSSLRLARIQKHLNKINKSPVFTIQSPDGDVIDCVPKRKQPALDHPLL 89

Query:    91 KNHKIQRVPSQMPKMKKALKEDEASSERNNERVIIEGAWQMWHRNGTRCPKGTVPIRRST 150
             K+HKIQ+ P +MPKMK   K+D+     N    ++EGAWQMWH NGTRCPKGTVPIRR+T
Sbjct:    90 KHHKIQKAPKKMPKMKG--KDDDVKEAEN----VLEGAWQMWHVNGTRCPKGTVPIRRNT 143

Query:   151 EHDVLRAKSLFDFGKKQHRRIPLHRRADAPDVVSGNGHEHAIAYTGSSQEVYGARATINV 210
              +DVLRAKSLFDFGKK+ R I L +R + PD +  NGHEHAIAYT SS E+YGA+ATINV
Sbjct:   144 MNDVLRAKSLFDFGKKR-RSIYLDQRTEKPDALGTNGHEHAIAYTESSSEIYGAKATINV 202

Query:   211 WDPSIQVVNEFSLSQIWVLSGSFDGSDLNSIEAGWQVSPELYGDSRPRLFTYWTSDSYQA 270
             WDP I+ VNEFSLSQIW+LSGSF G DLNSIEAGWQVSPELYGD+RPRLFTYWTSDSYQA
Sbjct:   203 WDPKIEEVNEFSLSQIWILSGSFVGPDLNSIEAGWQVSPELYGDNRPRLFTYWTSDSYQA 262

Query:   271 TGCYNLLCAGFIQTNSRIAIGAAISPISTYAGNQFDITILIWKDPKLGNWWMGFGENLLV 330
             TGCYNLLC+GFIQTN++IAIGAAISP+ST+ GNQFDITILIWKDPK+GNWWMG G++ LV
Sbjct:   263 TGCYNLLCSGFIQTNNKIAIGAAISPLSTFKGNQFDITILIWKDPKMGNWWMGLGDSTLV 322

Query:   331 GYWPAELFTHLADHATMVEWGGEVVNSRANGEHTSTQMGSGHFAEDGFGKASYFRNLEIV 390
             GYWPAELFTHLADHAT VEWGGEVVN+RA+G HT+TQMGSGHF ++GFGKASYFRNLE+V
Sbjct:   323 GYWPAELFTHLADHATTVEWGGEVVNTRASGRHTTTQMGSGHFPDEGFGKASYFRNLEVV 382

Query:   391 DSDNSLSSVRDISILAENTNCYNIKNSYNNEWGTHFYYGGPGRNPQC 437
             DSDNSL  V D+ ILAENT CY+IK+SY+NEWGT+FYYGGPG NP+C
Sbjct:   383 DSDNSLVPVHDVKILAENTECYDIKSSYSNEWGTYFYYGGPGFNPRC 429




GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2092870 AT3G13510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035666 AT1G55360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167121 AT5G56530 "AT5G56530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050487 AT2G44210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019933 AT1G10750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028025 AT1G23340 "AT1G23340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100434 AT3G48230 "AT3G48230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170091 AT5G50150 "AT5G50150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026815 AT1G70550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
pfam03080230 pfam03080, DUF239, Domain of unknown function (DUF 1e-129
pfam14365117 pfam14365, DUF4409, Domain of unknown function (DU 4e-56
>gnl|CDD|217358 pfam03080, DUF239, Domain of unknown function (DUF239) Back     alignment and domain information
 Score =  373 bits (959), Expect = e-129
 Identities = 143/234 (61%), Positives = 179/234 (76%), Gaps = 7/234 (2%)

Query: 201 VYGARATINVWDPSIQVVNEFSLSQIWVLSGSFDGSDLNSIEAGWQVSPELYGDSRPRLF 260
            YGA+ATINV++P +Q  N+FSLSQIW+++G  +G DLNSI+AGWQV+P LYGD+R RLF
Sbjct: 1   YYGAQATINVYNPKVQNPNQFSLSQIWIVNGPENG-DLNSIQAGWQVNPSLYGDNRTRLF 59

Query: 261 TYWTSDSYQATGCYNLLCAGFIQTNSRIAIGAAISPISTYAGNQFDITILIWKDPKLGNW 320
           TYWT D Y  TGCYNLLC GF+Q +S+IA+G AISP+S Y G Q+DIT+LIWKDPK GNW
Sbjct: 60  TYWT-DGYNKTGCYNLLCPGFVQVSSKIALGGAISPVSVYGGKQYDITLLIWKDPKTGNW 118

Query: 321 WMGFGENLLVGYWPAELFTHLADHATMVEWGGEVVNSRANGEHTSTQMGSGHFAEDGFGK 380
           W+ +G N ++GYWP+ LFTHL+  ATMVEWGGEV +    G H S  MGSGHF E+GFGK
Sbjct: 119 WLTYGNNTVIGYWPSSLFTHLSSGATMVEWGGEVYSPP--GGHPSPPMGSGHFPEEGFGK 176

Query: 381 ASYFRNLEIVDSDNSLSSV--RDISILAENTNCYNIKN-SYNNEWGTHFYYGGP 431
           A+YFRN+++VD DN L       +   A++ NCYN+K+  Y  EWG  FYYGGP
Sbjct: 177 AAYFRNIKVVDEDNKLVKPDEDKLETFADSPNCYNVKDGGYTGEWGHAFYYGGP 230


This is a family of plant and bacterial proteins, a small number of which are putative carboxy-terminal peptidases. Length = 230

>gnl|CDD|206533 pfam14365, DUF4409, Domain of unknown function (DUF4409) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 438
PF03080229 DUF239: Domain of unknown function (DUF239); Inter 100.0
PF14365117 DUF4409: Domain of unknown function (DUF4409) 100.0
>PF03080 DUF239: Domain of unknown function (DUF239); InterPro: IPR004314 This is a family of plant proteins, a small number of which are putative peptidases (see for example Q9XIN9 from SWISSPROT) Back     alignment and domain information
Probab=100.00  E-value=4.1e-84  Score=623.38  Aligned_cols=227  Identities=59%  Similarity=1.145  Sum_probs=216.3

Q ss_pred             eeeeEEEEEeeCCcccccCccceeeeeeecCCCCCCCccEEEEeeEEcccccCCCCcEEEEEEeecCccccceecccCCe
Q 013658          201 VYGARATINVWDPSIQVVNEFSLSQIWVLSGSFDGSDLNSIEAGWQVSPELYGDSRPRLFTYWTSDSYQATGCYNLLCAG  280 (438)
Q Consensus       201 ~yGa~a~inVw~P~V~~~~qfS~sqiwi~~G~~~~~~~nsIeaGW~V~P~lYgD~~~rlf~yWT~D~y~~tGCyNl~CpG  280 (438)
                      |||++|+||||+|+|+.++|||++||||++|.. ...+|+|||||+|+|+||||++||||+|||+|+|++||||||+|||
T Consensus         1 y~G~~a~i~v~~p~v~~~~q~S~~~i~i~~g~~-~~~~~~i~~GW~V~P~lygd~~~~lf~~wt~d~~~~tgCyN~~CpG   79 (229)
T PF03080_consen    1 YYGARATISVWNPKVQQPDQFSLSQIWISNGSD-DDSLNSIEAGWQVYPSLYGDSRTRLFVYWTADGYQKTGCYNLDCPG   79 (229)
T ss_pred             CeeeEEEEECcCCccCCccceeheeEEEEecCC-CCCCcEEEEeeeccccccCCCceEEEEEEEccCCCCcceeCCCCCc
Confidence            799999999999999987899999999999984 4679999999999999999999999999999999999999999999


Q ss_pred             eEEecCccccCcccccccccCCceeEEEEeeecCCCCCCeeEEeCCCeeeeeechhhhhhhhcCccEEEEceEEeecCCC
Q 013658          281 FIQTNSRIAIGAAISPISTYAGNQFDITILIWKDPKLGNWWMGFGENLLVGYWPAELFTHLADHATMVEWGGEVVNSRAN  360 (438)
Q Consensus       281 FVQvs~~i~lG~~i~pvS~~~G~q~~i~i~I~kD~~tgnWWL~~g~~~~IGYWP~~LF~~l~~~A~~V~wGGeV~~~~~~  360 (438)
                      |||||++|+||++|+|+|+++|+|++|+|.|+||+++|||||.+++ +.|||||++||++|+++|+.|+|||||++++  
T Consensus        80 FVq~s~~i~~G~~~~~~S~~gG~q~~i~~~i~kD~~~gnWWL~~~~-~~IGYwP~sLF~~l~~~A~~v~wGGeV~~~~--  156 (229)
T PF03080_consen   80 FVQVSSSIALGAAISPVSTYGGKQYEITLSIFKDPKSGNWWLYYGG-EPIGYWPKSLFTSLADGATEVEWGGEVYSPP--  156 (229)
T ss_pred             EEEeCCccccceeeCCCccCCCceEEEEEEEEecCCCccEEEEEec-ceeeeehHHhhhhhhcCceEEEEEEEEeCCC--
Confidence            9999999999999999999999999999999999999999999984 7999999999999999999999999999874  


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeEEeccEEEcCCCCccccc--cceecccCCCceeeecCCCCccccEEEEeCC
Q 013658          361 GEHTSTQMGSGHFAEDGFGKASYFRNLEIVDSDNSLSSVR--DISILAENTNCYNIKNSYNNEWGTHFYYGGP  431 (438)
Q Consensus       361 g~~tsp~MGSG~fp~~g~~kAay~~ni~ivd~~~~~~~~~--~~~~~~d~p~CY~v~~~~~~~~G~~f~yGGP  431 (438)
                      +.|++|||||||||++|+++|||||||+++|.+++..++.  .+++++|+|+||++......+||.+||||||
T Consensus       157 ~~~~sppMGSG~fp~~g~~~aAy~~~i~~~d~~~~~~~~~~~~~~~~~~~~~CY~~~~~~~~~~g~~f~yGGP  229 (229)
T PF03080_consen  157 GRHTSPPMGSGHFPSEGFGKAAYFRNIQVVDSNGQFVDPNDDLLEVFADNPSCYDVSYIGDGDWGYYFFYGGP  229 (229)
T ss_pred             CCCCCCCccCCcCCCCCCCccEEEEEEEEEcCCCCCcCCcccceeEccCCCCceeEeeccCCCcccEEEeeCC
Confidence            4589999999999999999999999999999999988763  4678999999999999877889999999999



However, the structure of the protein PDB3:3eu8 has an alpha-alpha toroid fold and is similar to a glucoamylase, PDB:1ayx. Such glucoamylases are involved in breaking down complex sugars (e.g. starch). The biologically relevant state is likely to be monomeric. The putative active site is located at the centre of the toroid with a well defined large cavity. Further structural comparisons also show relationships with other glycohydrolases.

>PF14365 DUF4409: Domain of unknown function (DUF4409) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 48/314 (15%), Positives = 88/314 (28%), Gaps = 98/314 (31%)

Query: 26  VQNFALVSSL--NYTKYRQVSSLRLERIQKHLQKINKPPVMTIESPDGDIIDCVHKRRQP 83
           VQ F +   L  NY          +  I+   +            P       + +R + 
Sbjct: 79  VQKF-VEEVLRINY-------KFLMSPIKTEQR-----------QPSMMTRMYIEQRDRL 119

Query: 84  ALDHPLLKNHKIQRVPSQMPKMKKALKEDEASSERNNERVIIEGAWQMWHRNGTRCPKGT 143
             D+ +   + + R      K+++AL E      R  + V+I+G   +    G    K  
Sbjct: 120 YNDNQVFAKYNVSR-LQPYLKLRQALLEL-----RPAKNVLIDG---V---LG--SGKTW 165

Query: 144 VPIRRSTEHDVLRAKSL---FDFG----KKQHRRIP---------LHRRADAPDVVSGNG 187
           V +      DV  +  +    DF       ++   P         L  + D P+  S + 
Sbjct: 166 VAL------DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSD 218

Query: 188 HEHAIAYTGSS----------QEVYGARATI---NVWDPSIQVVNEFSLS-QIWVLSGSF 233
           H   I     S           + Y     +   NV +   +  N F+LS +I + +   
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNA--KAWNAFNLSCKILLTTR-- 273

Query: 234 DGSDLNSIEAGWQVSPELYGDSRP-------RLFTYWTSDSY-----QATGCYNLLCAGF 281
                + + A       L   S          L   +          +         +  
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI- 332

Query: 282 IQTNSRIAIGAAIS 295
                   I  +I 
Sbjct: 333 --------IAESIR 338


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00