Citrus Sinensis ID: 013664

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44

MTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEAIAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLLSHLYMHVCAHVCAYLL

cccccccccHHHcccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEccEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccEEcEEEcccEEccccccHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccEEEEEEEEEEccccHHHHHHHHHHHHccccccccEEEEEEccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHccccc

cccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEcccEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccEEEHHHHHHHccccccEcccccEEEcccccccccccccccccccccHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccEEEEEEEccHHHHHHHHcccccccccccEEEEEEEcccc

mtdsskldttylltngnagpnlpdhmnVNAEAIAASSMIRshsvsgdlhgvqpdpiaadilrkepeqetfarlqitpkevpspdeMEAYVVLQECLEMRKRYLFREavapwekemisdpstpkpnpdpfyyapvgksdhhfemqdgvihvypnkdskeelypvadattffTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEflaqksaphrdfynvrkvdthvhhsacMNQKHLLRFIKSKlrkepdevvifrdgTYLTLKEVFESldltgydlnvdlldvhadkstfhrfdkfnlkynpcgqsrLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWikcnvcfpllsHLYMHVCAHVCAYLL

MTDSSKLDTTYLLTNgnagpnlpDHMNVNAEAIAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARlqitpkevpspdeMEAYVVLQECLEMRKRYLFREAVAPWEkemisdpstpkpnpDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSklrkepdevvifrdgtylTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLLSHLYMHVCAHVCAYLL

**************************************************************************************EAYVVLQECLEMRKRYLFREAVAPWE****************FYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLLSHLYMHVCAHVCAYL*

*********************************************************************FARLQITPKEVPSPDEMEAYVVLQECLEMRKRYL********************PNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKE******APHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLLSHLYMHVCAHVCAYLL

****SKLDTTYLLTNGNAGP***************************LHGVQPDPIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVA***KEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLLSHLYMHVCAHVCAYLL

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		438	2.2.26 [Sep-21-2011]
O80452		839	AMP deaminase OS=Arabidop	yes	no	0.878	0.458	0.835	0.0
Q84NP7		815	Probable AMP deaminase OS	yes	no	0.876	0.471	0.793	0.0
Q54DD0		790	AMP deaminase OS=Dictyost	yes	no	0.730	0.405	0.514	7e-91
P50998		831	AMP deaminase OS=Schizosa	yes	no	0.694	0.365	0.5	1e-81
P15274		810	AMP deaminase OS=Saccharo	yes	no	0.616	0.333	0.541	5e-79
Q02356		824	AMP deaminase 2 OS=Rattus	yes	no	0.673	0.358	0.477	7e-78
Q9DBT5		798	AMP deaminase 2 OS=Mus mu	yes	no	0.673	0.369	0.474	1e-77
Q01433		879	AMP deaminase 2 OS=Homo s	yes	no	0.673	0.335	0.471	2e-76
Q01432		767	AMP deaminase 3 OS=Homo s	no	no	0.646	0.368	0.493	9e-73
O08739		766	AMP deaminase 3 OS=Mus mu	no	no	0.561	0.321	0.528	2e-71

>sp\|O80452\|AMPD_ARATH AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1 SV=2	Back alignment and function desciption

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/388 (83%), Positives = 353/388 (90%), Gaps = 3/388 (0%)

Query: 1   MTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEAIAASSMIRSHSVSGDLHGVQPDPIAADI 60
           +T+S  LD +YL  NG+    +P   N    ++AASSMIRSHSVSGDLHGVQPDPIAADI
Sbjct: 163 LTNSEGLDASYLQANGDN--EMPADANEEQISMAASSMIRSHSVSGDLHGVQPDPIAADI 220

Query: 61  LRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPS 120
           LRKEPEQETF RL + P EVP+ DE+EAY  LQECLE+RKRY+F+E VAPWEKE+ISDPS
Sbjct: 221 LRKEPEQETFVRLNV-PLEVPTSDEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPS 279

Query: 121 TPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVI 180
           TPKPN +PF + P GKSDH FEMQDGV+HV+ NKD+KE+L+PVADAT FFTDLHH+L+VI
Sbjct: 280 TPKPNTEPFAHYPQGKSDHCFEMQDGVVHVFANKDAKEDLFPVADATAFFTDLHHVLKVI 339

Query: 181 ALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMN 240
           A GN+RTLCH RL+LLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMN
Sbjct: 340 AAGNIRTLCHRRLVLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMN 399

Query: 241 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHR 300
           QKHLLRFIKSKLRKEPDEVVIFRDGTYLTL+EVFESLDLTGYDLNVDLLDVHADKSTFHR
Sbjct: 400 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDVHADKSTFHR 459

Query: 301 FDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGR 360
           FDKFNLKYNPCGQSRLREIFLKQDNLIQGRFL E+TKQVFSDLEASKYQMAEYRISIYGR
Sbjct: 460 FDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGR 519

Query: 361 KQSEWDQLASWIVNNELYSENVVWLIQV 388
           K SEWDQLASWIVNN+LYSENVVWLIQ+
Sbjct: 520 KMSEWDQLASWIVNNDLYSENVVWLIQL 547

AMP deaminase plays a critical role in energy metabolism. Essential for the transition from zygote to embryo.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 6

>sp\|Q84NP7\|AMPD_ORYSJ Probable AMP deaminase OS=Oryza sativa subsp. japonica GN=AMPD PE=2 SV=1	Back alignment and function description

>sp\|Q54DD0\|AMPD_DICDI AMP deaminase OS=Dictyostelium discoideum GN=amdA PE=1 SV=1	Back alignment and function description

>sp\|P50998\|AMPD_SCHPO AMP deaminase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ada1 PE=1 SV=3	Back alignment and function description

>sp\|P15274\|AMPD_YEAST AMP deaminase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AMD1 PE=1 SV=2	Back alignment and function description

>sp\|Q02356\|AMPD2_RAT AMP deaminase 2 OS=Rattus norvegicus GN=Ampd2 PE=2 SV=2	Back alignment and function description

>sp\|Q9DBT5\|AMPD2_MOUSE AMP deaminase 2 OS=Mus musculus GN=Ampd2 PE=1 SV=1	Back alignment and function description

>sp\|Q01433\|AMPD2_HUMAN AMP deaminase 2 OS=Homo sapiens GN=AMPD2 PE=1 SV=2	Back alignment and function description

>sp\|Q01432\|AMPD3_HUMAN AMP deaminase 3 OS=Homo sapiens GN=AMPD3 PE=1 SV=1	Back alignment and function description

>sp\|O08739\|AMPD3_MOUSE AMP deaminase 3 OS=Mus musculus GN=Ampd3 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		438
255582650		821	AMP deaminase, putative [Ricinus communi	0.878	0.468	0.894	0.0
449461767		845	PREDICTED: AMP deaminase-like [Cucumis s	0.963	0.499	0.807	0.0
224140451		797	predicted protein [Populus trichocarpa]	0.865	0.475	0.892	0.0
357468881		621	AMP deaminase [Medicago truncatula] gi\|3	0.883	0.623	0.874	0.0
357468879		835	AMP deaminase [Medicago truncatula] gi\|3	0.883	0.463	0.874	0.0
356496203		848	PREDICTED: AMP deaminase-like [Glycine m	0.958	0.495	0.803	0.0
356503248		838	PREDICTED: AMP deaminase-like [Glycine m	0.958	0.501	0.803	0.0
224091022		876	predicted protein [Populus trichocarpa]	0.885	0.442	0.830	0.0
296083176		860	unnamed protein product [Vitis vinifera]	0.885	0.451	0.838	0.0
359481163		828	PREDICTED: AMP deaminase [Vitis vinifera	0.878	0.464	0.843	0.0

>gi\|255582650\|ref\|XP_002532104.1\| AMP deaminase, putative [Ricinus communis] gi\|223528207\|gb\|EEF30266.1\| AMP deaminase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/390 (89%), Positives = 371/390 (95%), Gaps = 5/390 (1%)

Query: 1   MTDSSKLDTTYLLTNGNAGPNLPDHMNVNAE--AIAASSMIRSHSVSGDLHGVQPDPIAA 58
           +TD+SKLDT YL TNGNA   + +H+N N E   I AS++IRSHSVSGDLHGVQPDPIAA
Sbjct: 143 LTDNSKLDTAYLHTNGNA---VTEHINANGEQIPIPASTLIRSHSVSGDLHGVQPDPIAA 199

Query: 59  DILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISD 118
           DILRKEPEQETFARL++TP EVPSPDE+E+Y+VLQECLEMRKRY+F+EA+APWEKE+ISD
Sbjct: 200 DILRKEPEQETFARLKVTPTEVPSPDEVESYIVLQECLEMRKRYIFKEAIAPWEKEIISD 259

Query: 119 PSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILR 178
           P TPKPNPDPF+YAP GKSDH+FEMQDGVIHVYPNKD KEEL+PVADATTFFTDLHHILR
Sbjct: 260 PGTPKPNPDPFFYAPEGKSDHYFEMQDGVIHVYPNKDCKEELFPVADATTFFTDLHHILR 319

Query: 179 VIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSAC 238
           VIA GN+RTLCHHRL LLEQKFNLHLMLNAD+EFLAQKSAPHRDFYNVRKVDTHVHHSAC
Sbjct: 320 VIAAGNIRTLCHHRLNLLEQKFNLHLMLNADREFLAQKSAPHRDFYNVRKVDTHVHHSAC 379

Query: 239 MNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTF 298
           MNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTF
Sbjct: 380 MNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTF 439

Query: 299 HRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIY 358
           HRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDL ASKYQMAEYRISIY
Sbjct: 440 HRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLGASKYQMAEYRISIY 499

Query: 359 GRKQSEWDQLASWIVNNELYSENVVWLIQV 388
           GRKQSEWDQLASWIVNNELYSENVVWLIQ+
Sbjct: 500 GRKQSEWDQLASWIVNNELYSENVVWLIQL 529

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449461767\|ref\|XP_004148613.1\| PREDICTED: AMP deaminase-like [Cucumis sativus] gi\|449525295\|ref\|XP_004169653.1\| PREDICTED: AMP deaminase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224140451\|ref\|XP_002323596.1\| predicted protein [Populus trichocarpa] gi\|222868226\|gb\|EEF05357.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357468881\|ref\|XP_003604725.1\| AMP deaminase [Medicago truncatula] gi\|355505780\|gb\|AES86922.1\| AMP deaminase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357468879\|ref\|XP_003604724.1\| AMP deaminase [Medicago truncatula] gi\|355505779\|gb\|AES86921.1\| AMP deaminase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356496203\|ref\|XP_003516959.1\| PREDICTED: AMP deaminase-like [Glycine max]	Back alignment and taxonomy information

>gi\|356503248\|ref\|XP_003520423.1\| PREDICTED: AMP deaminase-like [Glycine max]	Back alignment and taxonomy information

>gi\|224091022\|ref\|XP_002309149.1\| predicted protein [Populus trichocarpa] gi\|222855125\|gb\|EEE92672.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|296083176\|emb\|CBI22812.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359481163\|ref\|XP_002263306.2\| PREDICTED: AMP deaminase [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		438
TAIR\|locus:2042902		839	FAC1 "EMBRYONIC FACTOR1" [Arab	0.878	0.458	0.835	1.1e-176
DICTYBASE\|DDB_G0292266		790	amdA "AMP deaminase" [Dictyost	0.732	0.406	0.520	6.9e-86
CGD\|CAL0002924		778	orf19.891 [Candida albicans (t	0.582	0.327	0.560	8.3e-83
POMBASE\|SPBC106.04		831	ada1 "adenosine deaminase Ada1	0.694	0.365	0.512	2.7e-77
ZFIN\|ZDB-GENE-070713-5		793	ampd2 "adenosine monophosphate	0.563	0.311	0.548	5.2e-77
SGD\|S000004498		810	AMD1 "AMP deaminase" [Saccharo	0.616	0.333	0.541	1.7e-75
ZFIN\|ZDB-GENE-030131-5929		779	ampd3b "adenosine monophosphat	0.630	0.354	0.510	5.9e-74
ZFIN\|ZDB-GENE-091204-4		796	si:ch211-103a14.2 "si:ch211-10	0.636	0.350	0.494	8.4e-74
FB\|FBgn0052626		774	CG32626 [Drosophila melanogast	0.575	0.325	0.517	2.8e-73
RGD\|2110		824	Ampd2 "adenosine monophosphate	0.561	0.298	0.548	4.6e-73

TAIR\|locus:2042902 FAC1 "EMBRYONIC FACTOR1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1716 (609.1 bits), Expect = 1.1e-176, P = 1.1e-176
 Identities = 324/388 (83%), Positives = 353/388 (90%)

Query:     1 MTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEAIAASSMIRSHSVSGDLHGVQPDPIAADI 60
             +T+S  LD +YL  NG+    +P   N    ++AASSMIRSHSVSGDLHGVQPDPIAADI
Sbjct:   163 LTNSEGLDASYLQANGDN--EMPADANEEQISMAASSMIRSHSVSGDLHGVQPDPIAADI 220

Query:    61 LRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPS 120
             LRKEPEQETF RL + P EVP+ DE+EAY  LQECLE+RKRY+F+E VAPWEKE+ISDPS
Sbjct:   221 LRKEPEQETFVRLNV-PLEVPTSDEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPS 279

Query:   121 TPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVI 180
             TPKPN +PF + P GKSDH FEMQDGV+HV+ NKD+KE+L+PVADAT FFTDLHH+L+VI
Sbjct:   280 TPKPNTEPFAHYPQGKSDHCFEMQDGVVHVFANKDAKEDLFPVADATAFFTDLHHVLKVI 339

Query:   181 ALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMN 240
             A GN+RTLCH RL+LLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMN
Sbjct:   340 AAGNIRTLCHRRLVLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMN 399

Query:   241 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHR 300
             QKHLLRFIKSKLRKEPDEVVIFRDGTYLTL+EVFESLDLTGYDLNVDLLDVHADKSTFHR
Sbjct:   400 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDVHADKSTFHR 459

Query:   301 FDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGR 360
             FDKFNLKYNPCGQSRLREIFLKQDNLIQGRFL E+TKQVFSDLEASKYQMAEYRISIYGR
Sbjct:   460 FDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGR 519

Query:   361 KQSEWDQLASWIVNNELYSENVVWLIQV 388
             K SEWDQLASWIVNN+LYSENVVWLIQ+
Sbjct:   520 KMSEWDQLASWIVNNDLYSENVVWLIQL 547

GO:0003876 "AMP deaminase activity" evidence=IEA;IGI;ISS

GO:0006188 "IMP biosynthetic process" evidence=IEA

GO:0009168 "purine ribonucleoside monophosphate biosynthetic process" evidence=IEA;ISS

GO:0019239 "deaminase activity" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

DICTYBASE\|DDB_G0292266 amdA "AMP deaminase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

CGD\|CAL0002924 orf19.891 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

POMBASE\|SPBC106.04 ada1 "adenosine deaminase Ada1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-070713-5 ampd2 "adenosine monophosphate deaminase 2 (isoform L)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

SGD\|S000004498 AMD1 "AMP deaminase" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-5929 ampd3b "adenosine monophosphate deaminase 3b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-091204-4 si:ch211-103a14.2 "si:ch211-103a14.2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

FB\|FBgn0052626 CG32626 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

RGD\|2110 Ampd2 "adenosine monophosphate deaminase 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80452	AMPD_ARATH	3, ., 5, ., 4, ., 6	0.8350	0.8789	0.4588	yes	no
Q84NP7	AMPD_ORYSJ	3, ., 5, ., 4, ., 6	0.7932	0.8767	0.4711	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.4	0.766
3rd Layer	3.5.4.6	0.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		438
PLN02768		835	PLN02768, PLN02768, AMP deaminase	0.0
PLN03055		602	PLN03055, PLN03055, AMP deaminase; Provisional	0.0
cd01319		496	cd01319, AMPD, AMP deaminase (AMPD) catalyzes the	1e-140
TIGR01429		611	TIGR01429, AMP_deaminase, AMP deaminase	1e-126
PTZ00310		1453	PTZ00310, PTZ00310, AMP deaminase; Provisional	3e-53
PTZ00310		1453	PTZ00310, PTZ00310, AMP deaminase; Provisional	2e-19
pfam00962		328	pfam00962, A_deaminase, Adenosine/AMP deaminase	9e-19
COG1816		345	COG1816, Add, Adenosine deaminase [Nucleotide tran	5e-13
cd00443		305	cd00443, ADA_AMPD, Adenosine/AMP deaminase	2e-05

>gnl\|CDD\|215411 PLN02768, PLN02768, AMP deaminase	Back alignment and domain information

 Score =  824 bits (2129), Expect = 0.0
 Identities = 351/390 (90%), Positives = 365/390 (93%), Gaps = 4/390 (1%)

Query: 1   MTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEA--IAASSMIRSHSVSGDLHGVQPDPIAA 58
           +TD+ KLDTTYL TNGN     PDH + N E   I ASSMIRSHSVSGDLHGVQPDPIAA
Sbjct: 156 LTDNEKLDTTYLHTNGNVEL--PDHADANGEQIPIPASSMIRSHSVSGDLHGVQPDPIAA 213

Query: 59  DILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISD 118
           DILRKEPEQETF RL ITP EVPSPDE+EAY VLQECLE+RKRY+FRE VAPWEKE+ISD
Sbjct: 214 DILRKEPEQETFVRLNITPLEVPSPDEVEAYKVLQECLELRKRYVFREEVAPWEKEIISD 273

Query: 119 PSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILR 178
           PSTPKPNP+PF Y P GKSDH+FEMQDGV+HVY NKDSKEEL+PVADATTFFTDLHHILR
Sbjct: 274 PSTPKPNPNPFSYTPEGKSDHYFEMQDGVVHVYANKDSKEELFPVADATTFFTDLHHILR 333

Query: 179 VIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSAC 238
           VIA GN+RTLCHHRL LLEQKFNLHLMLNAD+EFLAQKSAPHRDFYNVRKVDTHVHHSAC
Sbjct: 334 VIAAGNIRTLCHHRLNLLEQKFNLHLMLNADREFLAQKSAPHRDFYNVRKVDTHVHHSAC 393

Query: 239 MNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTF 298
           MNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTF
Sbjct: 394 MNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTF 453

Query: 299 HRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIY 358
           HRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIY
Sbjct: 454 HRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIY 513

Query: 359 GRKQSEWDQLASWIVNNELYSENVVWLIQV 388
           GRKQSEWDQLASWIVNNELYSENVVWLIQ+
Sbjct: 514 GRKQSEWDQLASWIVNNELYSENVVWLIQL 543

Length = 835

>gnl\|CDD\|178613 PLN03055, PLN03055, AMP deaminase; Provisional	Back alignment and domain information

>gnl\|CDD\|238644 cd01319, AMPD, AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring	Back alignment and domain information

>gnl\|CDD\|233409 TIGR01429, AMP_deaminase, AMP deaminase	Back alignment and domain information

>gnl\|CDD\|240354 PTZ00310, PTZ00310, AMP deaminase; Provisional	Back alignment and domain information

>gnl\|CDD\|240354 PTZ00310, PTZ00310, AMP deaminase; Provisional	Back alignment and domain information

>gnl\|CDD\|216216 pfam00962, A_deaminase, Adenosine/AMP deaminase	Back alignment and domain information

>gnl\|CDD\|224729 COG1816, Add, Adenosine deaminase [Nucleotide transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|238250 cd00443, ADA_AMPD, Adenosine/AMP deaminase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		438
PLN02768		835	AMP deaminase	100.0
PLN03055		602	AMP deaminase; Provisional	100.0
KOG1096		768	consensus Adenosine monophosphate deaminase [Nucle	100.0
TIGR01429		611	AMP_deaminase AMP deaminase. This model describes	100.0
PTZ00310		1453	AMP deaminase; Provisional	100.0
cd01319		496	AMPD AMP deaminase (AMPD) catalyzes the hydrolytic	100.0
PTZ00310		1453	AMP deaminase; Provisional	100.0
COG1816		345	Add Adenosine deaminase [Nucleotide transport and	98.48
cd00443		305	ADA_AMPD Adenosine/AMP deaminase. Adenosine deamin	98.19
PF00962		331	A_deaminase: Adenosine/AMP deaminase immunodeficie	96.86
cd01321		345	ADGF Adenosine deaminase-related growth factors (A	85.81

>PLN02768 AMP deaminase	Back alignment and domain information

Probab=100.00  E-value=7.7e-133  Score=1074.83  Aligned_cols=423  Identities=86%  Similarity=1.291  Sum_probs=407.6

Q ss_pred             CCCCCCCcceeeccCCCCCCCCCCccccchhh--hhhhhhhhhccCCCCCCCCCCCCcchhhhccCcccCCcceeeeCCC
Q 013664            1 MTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEA--IAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARLQITPK   78 (438)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~mirS~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~rv~i~~~   78 (438)
                      ++++.+.|++|+++||+.+  .++++..||++  +.+..||||++++|++|++++||+++||+|++|++.+||||.|+|.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (835)
T PLN02768        156 LTDNEKLDTTYLHTNGNVE--LPDHADANGEQIPIPASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFVRLNITPL  233 (835)
T ss_pred             cCCcccccchhhccCCCCC--CccccccCcccccccchhceeccccCCccccCCCCchHHHHhhcCchhhhhhccccccC
Confidence            3567889999999999999  59999999999  8899999999999999999999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHHHHHhhccCCCCCCCcccccccCCCCCCCCCCCCCccCCCCCCCceEEeeCcEEEEecCCCCCc
Q 013664           79 EVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKE  158 (438)
Q Consensus        79 ~~~~~d~~~a~~~l~~aL~lR~kY~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~~~~GV~~v~~~~~~~~  158 (438)
                      ++|.+|+++|++.|.+||.||+||+|....++|+.....++++|+|.+|||.+.+++++++.|+|+|||++||.+.+..+
T Consensus       234 ~~~~~~~~~~~~~~~~~l~~r~ky~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~v~~~~~~~~  313 (835)
T PLN02768        234 EVPSPDEVEAYKVLQECLELRKRYVFREEVAPWEKEIISDPSTPKPNPNPFSYTPEGKSDHYFEMQDGVVHVYANKDSKE  313 (835)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHccCCCCCCccccccCCCCCCCCCCCCcccCCCCCCCeEEEecCCEEEEeeCCCCCc
Confidence            99999999999999999999999999888899988777778888999999999888999999999999999998887777


Q ss_pred             cccCCCChHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHhccchhhhhhcCCCCCCcccceeeccccccccc
Q 013664          159 ELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSAC  238 (438)
Q Consensus       159 ~~~pip~~~~F~~D~~~l~~~i~~g~~ksfc~~RL~~Le~KF~Lh~lLN~~~E~~~~K~~phRDFYNvrKVDthvh~Sac  238 (438)
                      ..+|+|||++|+.|++.|++++++||++|||++||+|||+||+||++||+++|..++|++||||||||||||||||||||
T Consensus       314 ~~~p~~~~~~F~~D~~~l~~~i~dg~~ksfc~~RL~~Le~Kf~Lh~lLN~~~E~~~~K~~phrDFYnvrKVDthvh~sac  393 (835)
T PLN02768        314 ELFPVADATTFFTDLHHILRVIAAGNIRTLCHHRLNLLEQKFNLHLMLNADREFLAQKSAPHRDFYNVRKVDTHVHHSAC  393 (835)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhcchhhhHhhccCCCCCceeeeEeeccchhhcc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccCcccCCCccccCccccCCCCCCChhHHHH
Q 013664          239 MNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLRE  318 (438)
Q Consensus       239 Mnqk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~~~LtVD~Ldvha~~~tfhrfD~fn~kynP~G~s~LR~  318 (438)
                      |||||||||||+|++++||+||+.++|+.+||+|||+++++++|+||||+|||||+++||||||+||+||||+|+++||+
T Consensus       394 Mnqk~LLrFIk~kl~~epd~vV~~~dGk~~TL~evFe~l~lt~ydLsVD~Ldvha~~~tfhRfDkFn~kynP~G~s~LRe  473 (835)
T PLN02768        394 MNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLRE  473 (835)
T ss_pred             CCHHHHHHHHHHHHhcCCCceeeccCCccccHHHHHHHcCCcccCCcccccccCCCccccccccccccccCccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccCCCCchhHHHHHHHHHHHHhhhccceeeEEEEEeecCChhHHHHHHHHHHHCCCCCCCceEEEEecchhhhcccc
Q 013664          319 IFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHH  398 (438)
Q Consensus       319 iFLktDN~i~G~YlAEliK~v~~~lE~skyQ~aE~rlsIYGrs~~EW~kLA~W~~~~~l~S~n~rW~IQIPRl~~~~~~~  398 (438)
                      |||||||+|+|||||||||+||+++|++|||+||+||||||++++||++||+|+++|||+|+||||+|||||+|.+    
T Consensus       474 iFLktDN~i~GrYfAELiK~V~~dlE~sKyQ~aE~RlsIYGr~~~EW~kLA~W~v~~~l~S~nvRWlIQIPRlY~i----  549 (835)
T PLN02768        474 IFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQLPRLYNV----  549 (835)
T ss_pred             HHcCcCCCCChhhHHHHHHHHHHHHHhccceeeEEEEEecCCCHHHHHHHHHHHHHcCCCCCCceEEEEcccchhh----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999975    


Q ss_pred             ccccccccccHHHHhhhccccccc-------cCchhHHHH
Q 013664          399 RCYEMLVMQNFSFWIKCNVCFPLL-------SHLYMHVCA  431 (438)
Q Consensus       399 ~~~~~g~~~nf~~~l~~niF~Plf-------~~~~~~~~~  431 (438)
                       +++.|+++||||||+ |||+|||       +||.||.|-
T Consensus       550 -~k~~g~v~nFqd~L~-NIF~PLFeATl~P~~hp~L~~FL  587 (835)
T PLN02768        550 -YKEMGIVTSFQNILD-NIFIPLFEVTVDPDSHPQLHVFL  587 (835)
T ss_pred             -hhcCCccCCHHHHHH-HHHHHHHHHhcCCccCHHHHHHH
Confidence             558899999999995 9999999       778888763

>PLN03055 AMP deaminase; Provisional	Back alignment and domain information

>KOG1096 consensus Adenosine monophosphate deaminase [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR01429 AMP_deaminase AMP deaminase	Back alignment and domain information

>PTZ00310 AMP deaminase; Provisional	Back alignment and domain information

>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring	Back alignment and domain information

>PTZ00310 AMP deaminase; Provisional	Back alignment and domain information

>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]	Back alignment and domain information

>cd00443 ADA_AMPD Adenosine/AMP deaminase	Back alignment and domain information

>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3	Back alignment and domain information

>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		438
2a3l_A		701	X-Ray Structure Of Adenosine 5'-Monophosphate Deami		0.0

>pdb|2A3L|A Chain A, X-Ray Structure Of Adenosine 5'-Monophosphate Deaminase From Arabidopsis Thaliana In Complex With Coformycin 5'-Phosphate Length = 701

Back alignment and structure

Iteration: 1

Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/388 (83%), Positives = 353/388 (90%), Gaps = 3/388 (0%) Query: 1 MTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEAIAASSMIRSHSVSGDLHGVQPDPIAADI 60 +T+S LD +YL NG+ +P N ++AASSMIRSHSVSGDLHGVQPDPIAADI Sbjct: 25 LTNSEGLDASYLQANGDN--EMPADANEEQISMAASSMIRSHSVSGDLHGVQPDPIAADI 82 Query: 61 LRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPS 120 LRKEPEQETF RL + P EVP+ DE+EAY LQECLE+RKRY+F+E VAPWEKE+ISDPS Sbjct: 83 LRKEPEQETFVRLNV-PLEVPTSDEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPS 141 Query: 121 TPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVI 180 TPKPN +PF + P GKSDH FEMQDGV+HV+ NKD+KE+L+PVADAT FFTDLHH+L+VI Sbjct: 142 TPKPNTEPFAHYPQGKSDHCFEMQDGVVHVFANKDAKEDLFPVADATAFFTDLHHVLKVI 201 Query: 181 ALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMN 240 A GN+RTLCH RL+LLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMN Sbjct: 202 AAGNIRTLCHRRLVLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMN 261 Query: 241 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHR 300 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTL+EVFESLDLTGYDLNVDLLDVHADKSTFHR Sbjct: 262 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDVHADKSTFHR 321 Query: 301 FDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGR 360 FDKFNLKYNPCGQSRLREIFLKQDNLIQGRFL E+TKQVFSDLEASKYQMAEYRISIYGR Sbjct: 322 FDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGR 381 Query: 361 KQSEWDQLASWIVNNELYSENVVWLIQV 388 K SEWDQLASWIVNN+LYSENVVWLIQ+ Sbjct: 382 KMSEWDQLASWIVNNDLYSENVVWLIQL 409

PyMOL of 2a3l

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		438
2a3l_A		701	AMP deaminase, AMPD; atampd, AT2G38280, adenosine	1e-172
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1 Length = 701	Back alignment and structure

 Score =  499 bits (1285), Expect = e-172
 Identities = 329/422 (77%), Positives = 363/422 (86%), Gaps = 11/422 (2%)

Query: 1   MTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEAIAASSMIRSHSVSGDLHGVQPDPIAADI 60
           +T+S  LD +YL  NG+    +P   N    ++AASSMIRSHSVSGDLHGVQPDPIAADI
Sbjct: 25  LTNSEGLDASYLQANGDN--EMPADANEEQISMAASSMIRSHSVSGDLHGVQPDPIAADI 82

Query: 61  LRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPS 120
           LRKEPEQETF RL + P EVP+ DE+EAY  LQECLE+RKRY+F+E VAPWEKE+ISDPS
Sbjct: 83  LRKEPEQETFVRLNV-PLEVPTSDEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPS 141

Query: 121 TPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVI 180
           TPKPN +PF + P GKSDH FEMQDGV+HV+ NKD+KE+L+PVADAT FFTDLHH+L+VI
Sbjct: 142 TPKPNTEPFAHYPQGKSDHCFEMQDGVVHVFANKDAKEDLFPVADATAFFTDLHHVLKVI 201

Query: 181 ALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMN 240
           A GN+RTLCH RL+LLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMN
Sbjct: 202 AAGNIRTLCHRRLVLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMN 261

Query: 241 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHR 300
           QKHLLRFIKSKLRKEPDEVVIFRDGTYLTL+EVFESLDLTGYDLNVDLLDVHADKSTFHR
Sbjct: 262 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDVHADKSTFHR 321

Query: 301 FDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGR 360
           FDKFNLKYNPCGQSRLREIFLKQDNLIQGRFL E+TKQVFSDLEASKYQMAEYRISIYGR
Sbjct: 322 FDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGR 381

Query: 361 KQSEWDQLASWIVNNELYSENVVWLIQV-WISMFLKSHHRCYEMLVMQNFSFWIKCNVCF 419
           K SEWDQLASWIVNN+LYSENVVWLIQ+  +    K          + +F   +  N+  
Sbjct: 382 KMSEWDQLASWIVNNDLYSENVVWLIQLPRLYNIYKDMGI------VTSFQNILD-NIFI 434

Query: 420 PL 421
           PL
Sbjct: 435 PL 436

PyMOL of 2a3l

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		438
2a3l_A		701	AMP deaminase, AMPD; atampd, AT2G38280, adenosine	100.0
2pgf_A		371	Adenosine deaminase; metallo-dependent hydrolase,	93.64

>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1	Back alignment and structure

Probab=100.00  E-value=7.9e-102  Score=836.78  Aligned_cols=422  Identities=79%  Similarity=1.214  Sum_probs=346.0

Q ss_pred             CCCCCcceeeccCCCCCCCCCCccccchhh--hhhhhhhhhccCCCCCCCCCCCCcchhhhccCcccCCcceeeeCCCCC
Q 013664            3 DSSKLDTTYLLTNGNAGPNLPDHMNVNAEA--IAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARLQITPKEV   80 (438)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~mirS~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~rv~i~~~~~   80 (438)
                      .+.+.|+.|+++||+.+..    +..++++  ....+|+||+|+++++++++++|+++++++++|.+++||||.|++ ++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~r~~s~~~~~~~~~~~~~~~~il~~~~~~~~f~rv~i~~-~~  101 (701)
T 2a3l_A           27 NSEGLDASYLQANGDNEMP----ADANEEQISMAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFVRLNVPL-EV  101 (701)
T ss_dssp             ---------------------------------------------------CCCTTTCCCCCCCCCSCCCCCCCCCC-CC
T ss_pred             cccCCcccccccccccccc----hhhccchhhHHHHhhhhccccccccccCCCCccccccccCCcccccceeEEcCC-CC
Confidence            3567899999999998753    5556655  566699999999999999999999999999999999999999966 56


Q ss_pred             CChhHHHHHHHHHHHHHHhhccCCCCCCCcccccccCCCCCCCCCCCCCccCCCCCCCceEEeeCcEEEEecCCCCCccc
Q 013664           81 PSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEEL  160 (438)
Q Consensus        81 ~~~d~~~a~~~l~~aL~lR~kY~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~~~~GV~~v~~~~~~~~~~  160 (438)
                      |..|+++|++.|.+||.||+||++.....+|+.++..++++|.|.+|||...+.+++++.|+|+||||+||.+++..+..
T Consensus       102 ~~~e~~~~~~~i~~al~lR~kY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~  181 (701)
T 2a3l_A          102 PTSDEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPSTPKPNTEPFAHYPQGKSDHCFEMQDGVVHVFANKDAKEDL  181 (701)
T ss_dssp             CCCSTTTTHHHHHHHHHHHHTTSCCCSSCTTSCC------------CCCCCCCCCCCCCCCCCBTTBCCCCCSSCCSSCS
T ss_pred             CCHHHHHHHHHHHHHHhhHHHhcccccCCchhccccccCCCCCCCCCcccCCCCCcccceEEeeccEEEEecCCCccccc
Confidence            78899999999999999999999987777887766666778888999999988888999999999999999877777889


Q ss_pred             cCCCChHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHhccchhhhhhcCCCCCCcccceeecccccccccCC
Q 013664          161 YPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMN  240 (438)
Q Consensus       161 ~pip~~~~F~~D~~~l~~~i~~g~~ksfc~~RL~~Le~KF~Lh~lLN~~~E~~~~K~~phRDFYNvrKVDthvh~SacMn  240 (438)
                      +|+|||++|+.|++.|+++|++||+||||++||+|||+||+||.+||+.+|..++|++|||||||++|||+|+|+||||+
T Consensus       182 ~~~~~~~~f~~d~~~l~~~~~~~~~~s~~~~Rl~~l~~kf~l~~~ln~~~E~~~~k~~~~~dFy~~~KVDlHvHLsg~m~  261 (701)
T 2a3l_A          182 FPVADATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMN  261 (701)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCSCCTTTSCEEEEEEETTTCSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhccCCCCccccCCccceeecccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccCcccCCCccccCccccCCCCCCChhHHHHHh
Q 013664          241 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIF  320 (438)
Q Consensus       241 qk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~~~LtVD~Ldvha~~~tfhrfD~fn~kynP~G~s~LR~iF  320 (438)
                      |++||+|||+|++.+|+++|+.++|+.+||+|+|+.++++.|+||||+|+|||++++|||||+||+||||+|+++||+||
T Consensus       262 ~~~LLefik~k~~~~pd~vv~~~~Gk~~TL~evF~~~~l~~ydltvd~L~~~ad~~~F~rFd~Fn~kynp~g~~~LreiF  341 (701)
T 2a3l_A          262 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIF  341 (701)
T ss_dssp             HHHHHHHHHHHHHTCCSCCCEEETTEEECHHHHHHHHSSCSTTCCSTTCCCCSCSSCCCCCSSSHHHHCCSSCCHHHHHH
T ss_pred             HHHHHHHHHhhccCCCCceEecCCCCcccHHHHHHHcCCccccccccccccccccchhhhhcccccccChhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCchhHHHHHHHHHHHHhhhccceeeEEEEEeecCChhHHHHHHHHHHHCCCCCCCceEEEEecchhhhcccccc
Q 013664          321 LKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRC  400 (438)
Q Consensus       321 LktDN~i~G~YlAEliK~v~~~lE~skyQ~aE~rlsIYGrs~~EW~kLA~W~~~~~l~S~n~rW~IQIPRl~~~~~~~~~  400 (438)
                      |||||+|.|+|||+++++|++++++++||++|+|+++||++..+|+++++|++++++.+.++||+|||||.+..     .
T Consensus       342 lktdn~i~~e~l~ri~~evled~a~dgV~Y~ElR~sp~~~~~~~~~~l~~~v~~~~~~~~~vr~ii~i~R~~~~-----~  416 (701)
T 2a3l_A          342 LKQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGRKMSEWDQLASWIVNNDLYSENVVWLIQLPRLYNI-----Y  416 (701)
T ss_dssp             SCSSSTTTTTTHHHHHHHHHHHHTTSSSEEEEEEEECCSSSSTHHHHHHHHHHTTTCCCSSEEEEEEEECCHHH-----H
T ss_pred             HHhcccccHHHHHHHHHHHHHHHHHcCCeEEEEEeccccCCCCcHHHHHHHHHhcCccCcceEEEEEeecccCH-----H
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998854     3


Q ss_pred             ccccccccHHHHhhhccccccc-------cCchhHHHHH-Hhh
Q 013664          401 YEMLVMQNFSFWIKCNVCFPLL-------SHLYMHVCAH-VCA  435 (438)
Q Consensus       401 ~~~g~~~nf~~~l~~niF~Plf-------~~~~~~~~~~-~~~  435 (438)
                      ...+.+.+|+++|+ |||.|||       +||.++.+-+ |++
T Consensus       417 ~a~~~v~~F~~~l~-nIF~PL~e~t~~p~~~~~l~~~~~~VvG  458 (701)
T 2a3l_A          417 KDMGIVTSFQNILD-NIFIPLFEATVDPDSHPQLHVFLKQVVG  458 (701)
T ss_dssp             TTSSSCSSTHHHHH-HHSSHHHHHHHCGGGSTTTHHHHTTEEE
T ss_pred             HhcChHHHHHHHHH-hhhhHHHHhhcCcccCHHHHhcCCCEEE
Confidence            36688999999996 9999999       5678777653 443

PyMOL of 2a3l

>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		438
d2a3la1		628	c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalyti	1e-161

>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 628	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Adenosine/AMP deaminase
domain: AMP deaminase (AMPD), catalytic domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  466 bits (1200), Expect = e-161
 Identities = 296/337 (87%), Positives = 318/337 (94%), Gaps = 1/337 (0%)

Query: 52  QPDPIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPW 111
           QPDPIAADILRKEPEQETF RL + P EVP+ DE+EAY  LQECLE+RKRY+F+E VAPW
Sbjct: 1   QPDPIAADILRKEPEQETFVRLNV-PLEVPTSDEVEAYKCLQECLELRKRYVFQETVAPW 59

Query: 112 EKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFT 171
           EKE+ISDPSTPKPN +PF + P GKSDH FEMQDGV+HV+ NKD+KE+L+PVADAT FFT
Sbjct: 60  EKEVISDPSTPKPNTEPFAHYPQGKSDHCFEMQDGVVHVFANKDAKEDLFPVADATAFFT 119

Query: 172 DLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDT 231
           DLHH+L+VIA GN+RTLCH RL+LLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDT
Sbjct: 120 DLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDT 179

Query: 232 HVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDV 291
           HVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTL+EVFESLDLTGYDLNVDLLDV
Sbjct: 180 HVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDV 239

Query: 292 HADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMA 351
           HADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFL E+TKQVFSDLEASKYQMA
Sbjct: 240 HADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKYQMA 299

Query: 352 EYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQV 388
           EYRISIYGRK SEWDQLASWIVNN+LYSENVVWLIQ+
Sbjct: 300 EYRISIYGRKMSEWDQLASWIVNNDLYSENVVWLIQL 336

PyMOL of d2a3la1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		438
d2a3la1		628	AMP deaminase (AMPD), catalytic domain {Thale cres	100.0
d1a4ma_		349	Adenosine deaminase (ADA) {Mouse (Mus musculus) [T	96.56
d2amxa1		357	Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI	88.97

>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Adenosine/AMP deaminase
domain: AMP deaminase (AMPD), catalytic domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.7e-104  Score=843.83  Aligned_cols=377  Identities=81%  Similarity=1.259  Sum_probs=349.1

Q ss_pred             CCCCcchhhhccCcccCCcceeeeCCCCCCChhHHHHHHHHHHHHHHhhccCCCCCCCcccccccCCCCCCCCCCCCCcc
Q 013664           52 QPDPIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYY  131 (438)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~f~rv~i~~~~~~~~d~~~a~~~l~~aL~lR~kY~~~~~~~~~~~~~~~~~~~~~~~~dp~~~  131 (438)
                      |++|+++++++++|+...|+||.|++ ++|..|+++|++.|.+||.||+|||+.++..+|..+...++.+|.+..+||..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~R~kY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (628)
T d2a3la1           1 QPDPIAADILRKEPEQETFVRLNVPL-EVPTSDEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPSTPKPNTEPFAH   79 (628)
T ss_dssp             CCCTTTCCCCCCCCCSCCCCCCCCCC-CCCCCSTTTTHHHHHHHHHHHHTTSCCCSSCTTSCC------------CCCCC
T ss_pred             CCCCchhhhhccCcchhceEEEEeCC-CCCCHHHHHHHHHHHHHHHhHHHhCCCCCCCcccccccCCCCCCCCCCCcccc
Confidence            58999999999999999999999865 57899999999999999999999999998889888888888888889999998


Q ss_pred             CCCCCCCceEEeeCcEEEEecCCCCCccccCCCChHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHhccchh
Q 013664          132 APVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKE  211 (438)
Q Consensus       132 ~~~~~~~~~~~~~~GV~~v~~~~~~~~~~~pip~~~~F~~D~~~l~~~i~~g~~ksfc~~RL~~Le~KF~Lh~lLN~~~E  211 (438)
                      .+++++++.|+|+||||+||.+++..+..+|+|||++|+.|++.|++++++||++|||++||+|||+||+||.+||+++|
T Consensus        80 ~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~~f~~d~~~l~~~~~~~~~~s~~~~RL~~Le~kf~l~~~lN~~~E  159 (628)
T d2a3la1          80 YPQGKSDHCFEMQDGVVHVFANKDAKEDLFPVADATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLHLMLNADKE  159 (628)
T ss_dssp             CCCCCCCCCCCCBTTBCCCCCSSCCSSCSCCCCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCceEEEEcCcEEEEeeCCCCcccccCCCCHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhCchhh
Confidence            88899999999999999999888777889999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCCCcccceeecccccccccCCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccCc
Q 013664          212 FLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDV  291 (438)
Q Consensus       212 ~~~~K~~phRDFYNvrKVDthvh~SacMnqk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~~~LtVD~Ldv  291 (438)
                      ..++|++||||||||||||+|||+|||||||+||+|||+|++++||++|+.++|+.+||+|+|++++++++++|||+|+|
T Consensus       160 ~~~~k~~~~rDfyn~~KVDlHvHlsg~m~~k~LLefIk~k~~~~pd~vv~~~~gk~~TL~evfe~~~l~~~dltvd~L~~  239 (628)
T d2a3la1         160 FLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDV  239 (628)
T ss_dssp             HHHGGGSCSCCTTTSCEEEEEEETTTCSCHHHHHHHHHHHHHTCCSCCCEEETTEEECHHHHHHHHSSCSTTCCSTTCCC
T ss_pred             hHhhhcCCCCccccccceeeeeccccCcCHHHHHHHHHHHHhhCCCceEEccCCccccHHHHHHhcCCCcccCChhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCccccCccccCCCCCCChhHHHHHhcccCCCCchhHHHHHHHHHHHHhhhccceeeEEEEEeecCChhHHHHHHHH
Q 013664          292 HADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASW  371 (438)
Q Consensus       292 ha~~~tfhrfD~fn~kynP~G~s~LR~iFLktDN~i~G~YlAEliK~v~~~lE~skyQ~aE~rlsIYGrs~~EW~kLA~W  371 (438)
                      |+++++|||||+||.||||+|+++||++||||||+|+|+|||||||+|++++++++||++|+|+||||++++||++||.|
T Consensus       240 ~~~~~~f~rfD~Fn~kynp~g~~~Lr~~FLktdn~i~G~ylael~kevl~dle~~~vqy~ElR~S~yg~~~~ew~~lA~w  319 (628)
T d2a3la1         240 HADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGRKMSEWDQLASW  319 (628)
T ss_dssp             CSCSSCCCCCSSSHHHHCCSSCCHHHHHHSCSSSTTTTTTHHHHHHHHHHHHTTSSSEEEEEEEECCSSSSTHHHHHHHH
T ss_pred             ccCchhhhhhhhhcccccchhhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCeEEEEEecccCCChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCCCCceEEEEecchhhhccccccccccccccHHHHhhhccccccc-------cCchhHHHH-HHhh
Q 013664          372 IVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLL-------SHLYMHVCA-HVCA  435 (438)
Q Consensus       372 ~~~~~l~S~n~rW~IQIPRl~~~~~~~~~~~~g~~~nf~~~l~~niF~Plf-------~~~~~~~~~-~~~~  435 (438)
                      ++++|++|.++||+|||||+|..     +++.|.+.||+++|+ |||.|||       +||.||.+- +|++
T Consensus       320 ~v~~~l~s~~~rw~Iqv~rly~~-----~r~~g~~~sf~~~L~-nIF~PLfeatl~p~~~p~L~~fL~~VvG  385 (628)
T d2a3la1         320 IVNNDLYSENVVWLIQLPRLYNI-----YKDMGIVTSFQNILD-NIFIPLFEATVDPDSHPQLHVFLKQVVG  385 (628)
T ss_dssp             HHTTTCCCSSEEEEEEEECCHHH-----HTTSSSCSSTHHHHH-HHSSHHHHHHHCGGGSTTTHHHHTTEEE
T ss_pred             HHHcCccccCcceEEEEeeeecH-----HHhCCccccHHHHHH-HHHHHHHHHhhChhhCHHHHHHhCceEE
Confidence            99999999999999999999964     457789999999995 9999999       778887764 3443

PyMOL of d2a3la1

>d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]}	Back information, alignment and structure