Citrus Sinensis ID: 013684
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 438 | 2.2.26 [Sep-21-2011] | |||||||
| Q0JIL1 | 394 | Probable nucleoredoxin 2 | yes | no | 0.819 | 0.911 | 0.489 | 1e-105 | |
| O80763 | 578 | Probable nucleoredoxin 1 | yes | no | 0.799 | 0.605 | 0.449 | 3e-82 | |
| Q7Y0F2 | 581 | Probable nucleoredoxin 1- | no | no | 0.799 | 0.602 | 0.453 | 1e-79 | |
| Q7Y0E8 | 569 | Probable nucleoredoxin 1- | no | no | 0.799 | 0.615 | 0.451 | 2e-79 | |
| Q8VZQ0 | 392 | Probable nucleoredoxin 3 | no | no | 0.799 | 0.892 | 0.413 | 4e-73 | |
| Q7XPE8 | 471 | Probable nucleoredoxin 3 | no | no | 0.732 | 0.681 | 0.379 | 2e-64 | |
| Q6DKJ4 | 435 | Nucleoredoxin OS=Homo sap | yes | no | 0.577 | 0.581 | 0.318 | 2e-32 | |
| P97346 | 435 | Nucleoredoxin OS=Mus musc | yes | no | 0.577 | 0.581 | 0.318 | 3e-32 | |
| A6QLU8 | 435 | Nucleoredoxin OS=Bos taur | yes | no | 0.577 | 0.581 | 0.314 | 3e-32 | |
| Q503L9 | 418 | Nucleoredoxin OS=Danio re | yes | no | 0.616 | 0.645 | 0.293 | 5e-32 |
| >sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica GN=Os01g0794400 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/372 (48%), Positives = 255/372 (68%), Gaps = 13/372 (3%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G EV++S+LEGK+ LYF+ANWYP C FT L Y +L+ +G+ FEV+FVS DE+ +
Sbjct: 31 GNEVQISELEGKIIGLYFAANWYPKCEAFTPALTAAYHQLKEHGAGFEVIFVSCDENRPS 90
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
F + MPW AVP+ D+ KK L+ +F +EGIP LVVL P + D VEL+++Y
Sbjct: 91 FERFHRAMPWPAVPFGDIGCKKRLSERFQVEGIPRLVVLAP---NGEVVQPDAVELVHRY 147
Query: 181 GIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVG 240
G RAFPFT ++ EL+ +E+ K QTL + + + Y+ G E+VP+SSLVGKTVG
Sbjct: 148 GDRAFPFTSARVAELEADEQRKFASQTLEKIFSVSGKDYVNGS--QEQVPISSLVGKTVG 205
Query: 241 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 300
LYFSA C PC KF KL +IY +K G A EDFE++++ D+++ + M
Sbjct: 206 LYFSAHRCAPCIKFTAKLAAIYSNLK------GKA-EDFEIIYIPMDKEEDGYLRSCSDM 258
Query: 301 PWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAK 359
PWLALP+ D + L +YFDV+ IP LV++GP+GKTVT++GRNL+NLY + A+PFT+ +
Sbjct: 259 PWLALPYDDGASSGALARYFDVREIPTLVVVGPDGKTVTREGRNLVNLYFDMAFPFTDEQ 318
Query: 360 LEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECG 419
+ L++ +E+AK P S H GHRHEL++VS+ +GGGP+ICC+CDEQG GWAYQC+ CG
Sbjct: 319 IRLLQEMEDEDAKGYPPSLRHTGHRHELSIVSDKSGGGPYICCECDEQGLGWAYQCIACG 378
Query: 420 YEVHPKCVRAVD 431
YE+H +C R ++
Sbjct: 379 YEIHLRCGRDME 390
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 8 |
| >sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (782), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/369 (44%), Positives = 226/369 (61%), Gaps = 19/369 (5%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G +V VS+LEGK L FS Y C T LV+ Y +L+ N DFE+V +S ++D +
Sbjct: 193 GNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKEDFEIVLISLEDDEES 252
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV-ELIYK 179
FN PWLA+P++D K L R F + +P LV+L P D T H V E I
Sbjct: 253 FNQDFKTKPWLALPFNDKSGSK-LARHFMLSTLPTLVILGP----DGKTRHSNVAEAIDD 307
Query: 180 YGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTV 239
YG+ A+PFT EK +EL++ EK K E QTL +LL + D Y+LG KV VS LVGKT+
Sbjct: 308 YGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKD-GAKVLVSDLVGKTI 366
Query: 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT 299
+YFSA WC PC F PKL+ +Y++IK+ E FE++F+S+DRDQ SF+ Y+
Sbjct: 367 LMYFSAHWCPPCRAFTPKLVEVYKQIKERN-------EAFELIFISSDRDQESFDEYYSQ 419
Query: 300 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAK 359
MPWLALPFGDP L K F V GIP L +GP G+TVTK+ R+L+ + +AYPFTE +
Sbjct: 420 MPWLALPFGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFTEER 479
Query: 360 LEFLEKQMEEEAKNLPRSEFHIGH-RHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLEC 418
L+ +E + +E AK+ P+ H+ H HEL L T + C C+E+G+ W+Y C EC
Sbjct: 480 LKEIEAKYDEIAKDWPKKVKHVLHEEHELEL----TRVQVYTCDKCEEEGTIWSYHCDEC 535
Query: 419 GYEVHPKCV 427
+++H KC
Sbjct: 536 DFDLHAKCA 544
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Probable thiol-disulfide oxidoreductase required for pollen tube growth and pollen function in the pistil. Seems not to be required for in vitro pollen tube growth. May be involved in the generation of lipid signaling molecules in pistil. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica GN=Os03g0405900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 297 bits (760), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 170/375 (45%), Positives = 229/375 (61%), Gaps = 25/375 (6%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G++V +SDLEGK L F N Y P FT VL +YE+L+ G FEVV VS D D +
Sbjct: 193 GDKVPISDLEGKYVGLCFVVNGYGPVVQFTSVLAKIYEKLKAVGEKFEVVMVSLDGDEES 252
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV-ELIYK 179
FN A MPWLA+P D +K L R F++ G+P LV++ P D TL+D + ++I +
Sbjct: 253 FNESFADMPWLAIPQGDKMCEK-LARYFELSGLPMLVLIGP----DGKTLNDDIADIIDE 307
Query: 180 YGIRA---FPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVG 236
+G A FPF+ EKLE L ++ K K E QTL +LL D ++LG KVPVS LVG
Sbjct: 308 HGPDAWEGFPFSAEKLEILAEKAKAKAESQTLESLLVTGDLDFVLGKD-GAKVPVSELVG 366
Query: 237 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESY 296
KTV LYFSA+WC PC F+PKL++ Y KIK+ DFE+VF+S+DR+Q+S++ +
Sbjct: 367 KTVLLYFSAKWCPPCRAFLPKLVNEYNKIKEKH-------NDFEIVFISSDREQSSYDEF 419
Query: 297 FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 356
F MPWLALP GD ++L+K F + GIP LV IGP+GKTVTK + + + +A+PFT
Sbjct: 420 FSGMPWLALPLGDERKQQLSKIFKITGIPSLVAIGPDGKTVTKDAKTPLVAHGADAFPFT 479
Query: 357 ----EAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWA 412
+ + EK++ + AK P H H HEL L T G C CDE G W+
Sbjct: 480 EEKLQELEKEKEKKINDMAKGWPEKLKHDLHDHELVLTRCTTYG----CDGCDEMGDSWS 535
Query: 413 YQCLECGYEVHPKCV 427
Y+C EC +++HPKC
Sbjct: 536 YRCKECDFDLHPKCA 550
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica GN=Os03g0405500 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 168/372 (45%), Positives = 226/372 (60%), Gaps = 22/372 (5%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G+ V +SDLEGK L F N Y P FT +L YE+L+ G FEVV VS D D
Sbjct: 186 GDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKEVGEKFEVVAVSLDSDEEL 245
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV-ELIYK 179
N A MPWLA+P D +K L R F++ G+P LV++ P D TL++ V ++I +
Sbjct: 246 SNESFAGMPWLAIPQEDKMGEK-LARYFELRGLPTLVLIGP----DGKTLNNNVADIIDE 300
Query: 180 YGIRA---FPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVG 236
+G A FPFT EK+E L ++ K K E QTL +LL D ++LG KVPVS LVG
Sbjct: 301 HGQDAWEGFPFTAEKMEILAEKAKAKAELQTLESLLVIGDLDFVLGKD-GAKVPVSELVG 359
Query: 237 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESY 296
KTV LYFSA+WC PC F+PKL+ Y KIK+ DFE++F+S+DRDQ+S++ +
Sbjct: 360 KTVLLYFSAKWCGPCRAFLPKLVDEYNKIKEKH-------NDFEIIFISSDRDQSSYDEF 412
Query: 297 FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 356
F MPWLALP GD + L+K F V+GIP LV IG +G+TV + + + + +A+PFT
Sbjct: 413 FSGMPWLALPLGDERKQHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTAHGADAFPFT 472
Query: 357 EAKLEFLEKQMEEEAKNLPRSEFHIGH-RHELNLVSEGTGGGPFICCDCDEQGSGWAYQC 415
E +L +E++++E AK P H H HEL L T G C CDE GS W+Y+C
Sbjct: 473 EERLLEMERKIDEMAKGWPGKLKHELHDEHELVLTRCTTYG----CDGCDEMGSSWSYRC 528
Query: 416 LECGYEVHPKCV 427
EC +++HPKC
Sbjct: 529 RECDFDLHPKCA 540
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (704), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 212/365 (58%), Gaps = 15/365 (4%)
Query: 63 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 122
EV + + GK L+FSA W PC +FT L+ +YE L+N G + E++FVS D D+ +F
Sbjct: 35 EVPLEYIHGKTICLFFSAIWCRPCKDFTPELIKLYENLQNRGEELEIIFVSFDHDMTSFY 94
Query: 123 NYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGI 182
+ CMPWLAVP+ +L L K+ I IP LV L Y D + + D + LI YG
Sbjct: 95 EHFWCMPWLAVPF-NLSLLNKLRDKYGISRIPSLVPL--YSD-EISVAEDVIGLIEDYGS 150
Query: 183 RAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLY 242
AFPFTK++ EEL+ + K L LLT+ R Y++ KV VS LVGKT+GLY
Sbjct: 151 EAFPFTKKRKEELKAIDDSKRLGGQLEKLLTHESRNYVVARN-GSKVLVSKLVGKTIGLY 209
Query: 243 FSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 302
F A WC P F +L+ +Y ++ +KG FEV+ +STDRD F MPW
Sbjct: 210 FGAHWCPPFRSFTSQLVDVYNELATT--DKGS----FEVILISTDRDSREFNINMTNMPW 263
Query: 303 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEF 362
LA+P+ D T ++L + F+V+ IP LVIIGPE KTVT R +++LY ++PFTE+++
Sbjct: 264 LAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTTNAREMVSLYGSRSFPFTESRIVE 323
Query: 363 LEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEV 422
L+ +++E +LPR H HEL L ++C C +QG WA+ C C Y++
Sbjct: 324 LKACLKKEGDSLPRKVKDNKHEHELKL----DMAKAYVCDFCKKQGRFWAFSCNACDYDL 379
Query: 423 HPKCV 427
HP CV
Sbjct: 380 HPTCV 384
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q7XPE8|NRX3_ORYSJ Probable nucleoredoxin 3 OS=Oryza sativa subsp. japonica GN=Os04g0608600 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 196/329 (59%), Gaps = 8/329 (2%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G+E+ +S +EGK L+FSA+W PC NFT L+ +Y +LRN + E++F+S D D +
Sbjct: 31 GKEIPLSSIEGKRICLFFSAHWCRPCRNFTPKLLQIYRKLRNTCKNMEIIFISLDRDEIS 90
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
F +Y MPWLA+P+ D ++ L +FDIE IP L+ L D V+L+ +Y
Sbjct: 91 FLDYFKGMPWLALPF-DTGLRQKLCVQFDIEHIPALIPLSTTLSHGFRVEEDAVKLVEEY 149
Query: 181 GIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVG 240
G+ A+PF ++ EL+ + + + L+ LL +R Y++ K P+S L GKT+G
Sbjct: 150 GVDAYPFGAKRRSELEGMDDARRQGGNLLQLLGCKEREYVIS-ADGIKTPISDLNGKTIG 208
Query: 241 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 300
LYF A WC PC F +L Y ++K + G+ F+V+F+S DR++ F++ M
Sbjct: 209 LYFGAHWCPPCRAFTKQLREAYDELKA--LRPGN----FQVIFISMDRNEEEFQASLSAM 262
Query: 301 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKL 360
PW A+P+ D T++EL++ F ++GIP L+I+GP+GK GR +I+ Y A+PFTE++
Sbjct: 263 PWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMAFPFTESRA 322
Query: 361 EFLEKQMEEEAKNLPRSEFHIGHRHELNL 389
LE+ +++E +LP H HEL L
Sbjct: 323 YELEEVLKKERDSLPHRVRDHRHEHELEL 351
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q6DKJ4|NXN_HUMAN Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 149/305 (48%), Gaps = 52/305 (17%)
Query: 61 GEEVKVSDLEGK---VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSD----------- 106
GEEV V L + + LYF + PC + L Y LR + +
Sbjct: 18 GEEVDVHSLGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGAGAGAA 77
Query: 107 --------FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVV 158
E+VFVSSD+D + ++ MPWLA+PY + K L K+ I IP L+
Sbjct: 78 AEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRISNIPSLIF 137
Query: 159 LQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRG 218
L DAT +++ + G+ ++ E L+ K R+ + L ++
Sbjct: 138 L-------DATTG---KVVCRNGLLVI---RDDPEGLEFPWGPKPFREVIAGPLLRNN-- 182
Query: 219 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALED 278
+ + SSL G VG+YFSA WC PC L+ Y+KIK+ A ++
Sbjct: 183 -------GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-------AGQN 228
Query: 279 FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPEGKTV 337
FE++FVS DR + SF+ YF MPWLA+P+ D + L + + +QGIP L+++ P+G+ +
Sbjct: 229 FEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVI 288
Query: 338 TKQGR 342
T+QGR
Sbjct: 289 TRQGR 293
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Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|P97346|NXN_MOUSE Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 149/305 (48%), Gaps = 52/305 (17%)
Query: 61 GEEVKVSDLEGKVTAL---YFSANWYPPCGNFTGVLVDVYEELRNNGSD----------- 106
GEEV V L + AL YF + PC + L Y LR + +
Sbjct: 18 GEEVDVHSLGARGIALLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGAGAGAGAA 77
Query: 107 --------FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVV 158
E+VFVSSD+D + ++ MPWLA+PY + K L K+ + IP L+
Sbjct: 78 AEPEPRHRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRVSNIPSLIF 137
Query: 159 LQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRG 218
L DAT +++ + G+ ++ E L+ K R+ + L ++
Sbjct: 138 L-------DATTG---KVVCRNGLLVI---RDDPEGLEFPWGPKPFREVIAGPLLRNN-- 182
Query: 219 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALED 278
+ + SSL G VG+YFSA WC PC L+ Y+KIK+ A ++
Sbjct: 183 -------GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-------AGQE 228
Query: 279 FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPEGKTV 337
FE++FVS DR + SF+ YF MPWLA+P+ D + L + + +QGIP L+++ P+G+ +
Sbjct: 229 FEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVI 288
Query: 338 TKQGR 342
T+QGR
Sbjct: 289 TRQGR 293
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Mus musculus (taxid: 10090) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|A6QLU8|NXN_BOVIN Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 144/305 (47%), Gaps = 52/305 (17%)
Query: 61 GEEVKVSDLEGK---VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSD----------- 106
GEEV V L + + LYF + PC + L Y LR + +
Sbjct: 18 GEEVDVHSLAARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGPGAGAS 77
Query: 107 --------FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVV 158
E+VFVSSD+D + ++ MPWLA+PY + K L K+ I IP L+
Sbjct: 78 AEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRISNIPSLIF 137
Query: 159 LQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRG 218
L K +G+ +I ++ E L+ K R+ + L +
Sbjct: 138 LDATSGK--VVCRNGLLVI-----------RDDPEGLEFPWGPKPFREVIAGPLLRSN-- 182
Query: 219 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALED 278
+ + SSL G VG+YFSA WC PC L+ Y+KIK+ A +
Sbjct: 183 -------GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-------AGQK 228
Query: 279 FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPEGKTV 337
FE++FVS DR + SF+ YF MPWLA+P+ D + L + + +QGIP L+++ P+G+ +
Sbjct: 229 FEIIFVSADRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVI 288
Query: 338 TKQGR 342
T+QGR
Sbjct: 289 TRQGR 293
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Bos taurus (taxid: 9913) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q503L9|NXN_DANRE Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 147/307 (47%), Gaps = 37/307 (12%)
Query: 42 LSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELR 101
+S++ V L R+ + ++ +V+ + LYF + PC F L + Y + +
Sbjct: 1 MSEFLVNLLGERLVNGEKAEVDVQALGSRLSLLGLYFGCSLNGPCKQFNASLTEFYSKFK 60
Query: 102 NNG---SDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVV 158
+ E+VF+SSD+D + ++ M W A+P+ D K L K+ + IP LV
Sbjct: 61 KSSEHKDKLEIVFISSDQDQKQWQDFLQEMQWPALPFKDRHKKMKLWNKYKVTSIPSLVF 120
Query: 159 LQPYDDKDDATLHDGVELIYK--YGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHD 216
+ K +G+ ++ G+ FP+ + E+ ++ RQT +
Sbjct: 121 IDAATGK--VVCRNGLLVVRDDPKGLE-FPWGPKPFAEVVSGPLLRNNRQTTDS------ 171
Query: 217 RGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDAL 276
++L G VG+YFSA WC PC L+ Y+K+K E G
Sbjct: 172 ---------------TALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVK----ETG--- 209
Query: 277 EDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPEGK 335
+ FE+VFVS DR + SF YF MPWLA+P+ D + L + + +QGIP L+++ EG
Sbjct: 210 QKFEIVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILLDTEGH 269
Query: 336 TVTKQGR 342
+T+QGR
Sbjct: 270 MITRQGR 276
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway. Danio rerio (taxid: 7955) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 438 | ||||||
| 255539056 | 389 | nucleoredoxin, putative [Ricinus communi | 0.853 | 0.961 | 0.765 | 1e-176 | |
| 225459742 | 425 | PREDICTED: probable nucleoredoxin 2 [Vit | 0.858 | 0.884 | 0.780 | 1e-173 | |
| 224083147 | 423 | predicted protein [Populus trichocarpa] | 0.858 | 0.888 | 0.751 | 1e-165 | |
| 449519962 | 410 | PREDICTED: probable nucleoredoxin 2-like | 0.853 | 0.912 | 0.693 | 1e-156 | |
| 449437178 | 410 | PREDICTED: probable nucleoredoxin 2-like | 0.853 | 0.912 | 0.693 | 1e-156 | |
| 356509102 | 423 | PREDICTED: probable nucleoredoxin 2-like | 0.844 | 0.874 | 0.684 | 1e-151 | |
| 255641294 | 423 | unknown [Glycine max] | 0.844 | 0.874 | 0.681 | 1e-151 | |
| 357467067 | 429 | Nucleoredoxin [Medicago truncatula] gi|3 | 0.878 | 0.897 | 0.657 | 1e-148 | |
| 356517692 | 411 | PREDICTED: probable nucleoredoxin 2-like | 0.844 | 0.900 | 0.665 | 1e-146 | |
| 356517694 | 434 | PREDICTED: probable nucleoredoxin 2-like | 0.844 | 0.852 | 0.629 | 1e-143 |
| >gi|255539056|ref|XP_002510593.1| nucleoredoxin, putative [Ricinus communis] gi|223551294|gb|EEF52780.1| nucleoredoxin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust.
Identities = 288/376 (76%), Positives = 334/376 (88%), Gaps = 2/376 (0%)
Query: 63 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 122
+VKVS+LEGKV LYFSANWYPPC NF VL VYE+L+ NGS+FEVVFVSSDE+L+AFN
Sbjct: 16 KVKVSELEGKVIGLYFSANWYPPCRNFNQVLAGVYEQLKENGSNFEVVFVSSDENLDAFN 75
Query: 123 NYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGI 182
NYRA MPWL++P+SDLETKKAL+RKF+IEG+PCLV+LQP DDK++ATLHDGV+L+Y++G+
Sbjct: 76 NYRALMPWLSIPFSDLETKKALDRKFNIEGVPCLVILQPKDDKEEATLHDGVDLLYRFGV 135
Query: 183 RAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLY 242
+AFPFTKE+LEEL+ +EKEKHE QTL NLLTNHDR YL HP ++VPV+SL+GKT+GL+
Sbjct: 136 QAFPFTKERLEELKMQEKEKHESQTLTNLLTNHDRDYLFAHPAPKQVPVASLIGKTIGLF 195
Query: 243 FSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 302
FSA+WC P KF PKL+SIY KIKQ L E+ EDFE+VFVSTDRDQ F+SYF TMPW
Sbjct: 196 FSAQWCRPGMKFTPKLISIYHKIKQMLRERES--EDFEIVFVSTDRDQEGFDSYFNTMPW 253
Query: 303 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEF 362
LALPFGDPTIK LTKYFDVQGIPCL+IIGP GKT+TK GRNLINLYQENAYPFTEAK+E
Sbjct: 254 LALPFGDPTIKTLTKYFDVQGIPCLIIIGPNGKTITKNGRNLINLYQENAYPFTEAKVEL 313
Query: 363 LEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEV 422
LEKQMEEE K+LPRSE+H+GH+HELNLV+EGTGGGP+ICCDCDEQGSGWAYQCLECGYEV
Sbjct: 314 LEKQMEEEFKSLPRSEYHVGHKHELNLVTEGTGGGPYICCDCDEQGSGWAYQCLECGYEV 373
Query: 423 HPKCVRAVDRGSMIQR 438
HPKCVR V+ GS R
Sbjct: 374 HPKCVRVVEPGSTRAR 389
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459742|ref|XP_002285895.1| PREDICTED: probable nucleoredoxin 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 295/378 (78%), Positives = 338/378 (89%), Gaps = 2/378 (0%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G++VKVS+L KV LYFSANWY PC FT VL YE+L++ G+ FE+VFVSSDED +A
Sbjct: 50 GQQVKVSELNDKVIGLYFSANWYAPCRKFTQVLAGAYEQLKSCGAGFEIVFVSSDEDSDA 109
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
F+N+RACMPWLAVP+SDLETKKALNRKFDIEGIPCLV+LQP D+KD+ATLHDGVELIY+Y
Sbjct: 110 FDNFRACMPWLAVPFSDLETKKALNRKFDIEGIPCLVILQPNDNKDEATLHDGVELIYRY 169
Query: 181 GIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVG 240
G+ AFPFTK +LEEL+KEE+EKHE QTL NLLTNH+R +LLG P ++VP+SSL+GKT+G
Sbjct: 170 GVNAFPFTKVRLEELRKEEREKHESQTLPNLLTNHNRDFLLGRPTAKQVPISSLIGKTIG 229
Query: 241 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 300
LYFSA+WC+P KF PKL+SIYQKIKQ LV+ D EDFE+VFVS+DRDQ SF+SYFGTM
Sbjct: 230 LYFSAQWCLPGVKFTPKLISIYQKIKQTLVD--DNEEDFEIVFVSSDRDQPSFDSYFGTM 287
Query: 301 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKL 360
PWLA+PFGDPTIK LTKYFDVQGIPCLVI+GP+GKTVTKQGR LINLYQENAYPFTEAKL
Sbjct: 288 PWLAVPFGDPTIKTLTKYFDVQGIPCLVILGPDGKTVTKQGRYLINLYQENAYPFTEAKL 347
Query: 361 EFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGY 420
E LEKQM+EEAK+LPRSE+H GHRHEL LVSEGTGGGPFICCDCDEQG GWAYQCLECGY
Sbjct: 348 ELLEKQMDEEAKSLPRSEYHAGHRHELTLVSEGTGGGPFICCDCDEQGLGWAYQCLECGY 407
Query: 421 EVHPKCVRAVDRGSMIQR 438
EVHPKC+R VDRGS ++R
Sbjct: 408 EVHPKCMRVVDRGSTLER 425
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083147|ref|XP_002306954.1| predicted protein [Populus trichocarpa] gi|222856403|gb|EEE93950.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 284/378 (75%), Positives = 335/378 (88%), Gaps = 2/378 (0%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTG-VLVDVYEELRNNGSDFEVVFVSSDEDLN 119
G +VKVSDLEGKV LYFSANWY PC +FT VL+ Y++L++NGS+FE+VFVSSDEDL+
Sbjct: 46 GTQVKVSDLEGKVLGLYFSANWYAPCRSFTSQVLIGAYQDLKSNGSNFEIVFVSSDEDLD 105
Query: 120 AFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYK 179
AFNNYRA MPWL++P+SDLETKKALN KFD+E IPCLV+L P D+KD+ATLHDGVEL+++
Sbjct: 106 AFNNYRANMPWLSIPFSDLETKKALNSKFDVEAIPCLVILHPKDNKDEATLHDGVELLHR 165
Query: 180 YGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTV 239
+G++AFPFTKE+LEEL+ EEKEKHERQTL NLL H+R YLLGHP +VPV+SLVGKT+
Sbjct: 166 FGVQAFPFTKERLEELKLEEKEKHERQTLTNLLICHNRDYLLGHPAPRQVPVASLVGKTI 225
Query: 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT 299
GLYFS+ WC+P KF PKL+SIYQKIKQ LV KG+ +DFE+VFVS+DRDQ F+SYF +
Sbjct: 226 GLYFSSHWCLPGGKFTPKLISIYQKIKQMLVNKGND-DDFEIVFVSSDRDQAEFDSYFNS 284
Query: 300 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAK 359
MPWLALPFGDP K L K+FDV+GIPCLVI+GP+GKTV+K GRNLINLYQENAYPFTEA+
Sbjct: 285 MPWLALPFGDPANKTLAKHFDVKGIPCLVILGPDGKTVSKHGRNLINLYQENAYPFTEAQ 344
Query: 360 LEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECG 419
++ LEKQM+EEA++LPRS+ H GHRHEL LVSEGTGGGPFICCDCDEQGSGWAYQCLECG
Sbjct: 345 VDLLEKQMDEEAQSLPRSKNHAGHRHELTLVSEGTGGGPFICCDCDEQGSGWAYQCLECG 404
Query: 420 YEVHPKCVRAVDRGSMIQ 437
YEVHPKCVRAVDRGSM +
Sbjct: 405 YEVHPKCVRAVDRGSMAE 422
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449519962|ref|XP_004167003.1| PREDICTED: probable nucleoredoxin 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 262/378 (69%), Positives = 317/378 (83%), Gaps = 4/378 (1%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G +VKVS+L+GKV LYFSANWYPPC NF +LV YE+L++NGS+FEVV+VSSDED +A
Sbjct: 36 GAQVKVSNLDGKVLGLYFSANWYPPCRNFNQILVRTYEKLQDNGSNFEVVYVSSDEDSDA 95
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDD-ATLHDGVELIYK 179
FN YRA MPW A+P+SDLETK ALNRKF IEGIPCL++LQP + KD+ ATLH+GVE++Y+
Sbjct: 96 FNEYRASMPWPAIPFSDLETKIALNRKFGIEGIPCLIILQPRESKDETATLHEGVEVVYR 155
Query: 180 YGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTV 239
YG+ AFPFT+E+LE+L++E++EK E QTL+ LLTN+ R YL H ++VPV SLVGKTV
Sbjct: 156 YGVDAFPFTQERLEQLKEEDREKEENQTLVTLLTNNYRDYLFAHSFPKQVPVVSLVGKTV 215
Query: 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT 299
GLYFSA+WC+P F PKL+S+Y KIK+ + K D EDFE+VFVS+DRD+ SF SYFG+
Sbjct: 216 GLYFSAKWCLPG-MFTPKLISVYSKIKRMVEMKED--EDFEIVFVSSDRDEDSFHSYFGS 272
Query: 300 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAK 359
MPWL LP+GDP IKEL K+FDVQGIPCL+I+ P GKT+TKQGRNLINLY+ENAYPFTEA+
Sbjct: 273 MPWLGLPYGDPMIKELAKHFDVQGIPCLIILAPNGKTITKQGRNLINLYRENAYPFTEAR 332
Query: 360 LEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECG 419
LE L K+M EEAK LP S H+GHRHELNLVSEG GGGPFICC+C+EQGSGWAYQCLECG
Sbjct: 333 LEELVKEMGEEAKKLPTSVRHVGHRHELNLVSEGNGGGPFICCECNEQGSGWAYQCLECG 392
Query: 420 YEVHPKCVRAVDRGSMIQ 437
+EVHPKCV +R S I
Sbjct: 393 FEVHPKCVEMNNRNSPIN 410
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437178|ref|XP_004136369.1| PREDICTED: probable nucleoredoxin 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 262/378 (69%), Positives = 317/378 (83%), Gaps = 4/378 (1%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G +VKVS+L+GKV LYFSANWYPPC NF +LV YE+L++NGS+FEVV+VSSDED +A
Sbjct: 36 GAQVKVSNLDGKVLGLYFSANWYPPCRNFNQILVRTYEKLQDNGSNFEVVYVSSDEDSDA 95
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDD-ATLHDGVELIYK 179
FN YRA MPW A+P+SDLETK ALNRKF IEGIPCL++LQP + KD+ ATLH+GVE++Y+
Sbjct: 96 FNEYRASMPWPAIPFSDLETKIALNRKFGIEGIPCLIILQPRESKDETATLHEGVEVVYR 155
Query: 180 YGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTV 239
YG+ AFPFT+E+LE+L++E++EK E QTL+ LLTN+ R YL H ++VPV SLVGKTV
Sbjct: 156 YGVDAFPFTQERLEQLKEEDREKEENQTLVTLLTNNYRDYLFAHSFPKQVPVVSLVGKTV 215
Query: 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT 299
GLYFSA+WC+P F PKL+S+Y KIK+ + K D EDFE+VFVS+DRD+ SF SYFG+
Sbjct: 216 GLYFSAKWCLPG-MFTPKLISVYSKIKRMVEMKED--EDFEIVFVSSDRDEDSFHSYFGS 272
Query: 300 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAK 359
MPWL LP+GDP IKEL K+FDVQGIPCL+I+ P GKT+TKQGRNLINLY+ENAYPFTEA+
Sbjct: 273 MPWLGLPYGDPMIKELAKHFDVQGIPCLIILAPNGKTITKQGRNLINLYRENAYPFTEAR 332
Query: 360 LEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECG 419
LE L K+M EEAK LP S H+GHRHELNLVSEG GGGPFICC+C+EQGSGWAYQCLECG
Sbjct: 333 LEELVKEMGEEAKKLPTSVRHVGHRHELNLVSEGNGGGPFICCECNEQGSGWAYQCLECG 392
Query: 420 YEVHPKCVRAVDRGSMIQ 437
+EVHPKCV +R S I
Sbjct: 393 FEVHPKCVEMNNRNSPIN 410
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509102|ref|XP_003523291.1| PREDICTED: probable nucleoredoxin 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 256/374 (68%), Positives = 312/374 (83%), Gaps = 4/374 (1%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G +VKVSDLEGKV L F+ANWYPPC FT VL +YEEL++ FE+V+VSSDEDLNA
Sbjct: 40 GAQVKVSDLEGKVVGLLFAANWYPPCRGFTQVLAGIYEELKSRVPQFEIVYVSSDEDLNA 99
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
FN++ MPW+A+P+SDLETKK+L RKFD+E +PCL++LQP D K+ AT+ DGVELIY+Y
Sbjct: 100 FNSFYGSMPWIAIPFSDLETKKSLTRKFDVEAVPCLILLQPDDRKEHATVRDGVELIYRY 159
Query: 181 GIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPD--EKVPVSSLVGKT 238
GI+A+PF+K++LE+LQKE+K K + QTL NLL NH R Y+L H +KVPV+SLVGKT
Sbjct: 160 GIQAYPFSKDRLEQLQKEDKVKRDNQTLTNLLANHHRDYVLSHTHTGLKKVPVASLVGKT 219
Query: 239 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFG 298
+GLYFSA WC+PC KF PKL+S+Y+KIK L EKG+ EDFEVV +S+DRDQ SF+SY+
Sbjct: 220 IGLYFSAEWCVPCAKFTPKLISVYEKIKHELAEKGE--EDFEVVLISSDRDQASFDSYYS 277
Query: 299 TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEA 358
TMPWLALPFGDP IK L ++++VQGIP LVIIGP+GKT+T GR+LINLYQENAYPFT+A
Sbjct: 278 TMPWLALPFGDPEIKNLVRHYNVQGIPWLVIIGPDGKTITVHGRSLINLYQENAYPFTKA 337
Query: 359 KLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLEC 418
K+E LEKQ+EEEAK LP +H GHRH+LNLVS+G GGGPFICC CDEQGS WAYQCL+C
Sbjct: 338 KVEELEKQLEEEAKGLPALVYHQGHRHDLNLVSDGNGGGPFICCVCDEQGSSWAYQCLQC 397
Query: 419 GYEVHPKCVRAVDR 432
GYEVHPKCVR V+R
Sbjct: 398 GYEVHPKCVRTVER 411
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255641294|gb|ACU20924.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 255/374 (68%), Positives = 312/374 (83%), Gaps = 4/374 (1%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G +VKVSDLEGKV L F+ANWYPPC FT VL +YEEL++ FE+V+VSSDEDLNA
Sbjct: 40 GAQVKVSDLEGKVVGLLFAANWYPPCRGFTQVLAGIYEELKSRVPQFEIVYVSSDEDLNA 99
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
FN++ MPW+A+P+SDLETKK+L RKFD+E +PCL++LQP D K+ AT+ DG+ELIY+Y
Sbjct: 100 FNSFYGSMPWIAIPFSDLETKKSLTRKFDVEAVPCLILLQPDDRKEHATVRDGIELIYRY 159
Query: 181 GIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPD--EKVPVSSLVGKT 238
GI+A+PF+K++LE+LQKE+K K + QTL NLL NH R Y+L H +KVPV+SLVGKT
Sbjct: 160 GIQAYPFSKDRLEQLQKEDKVKRDNQTLTNLLANHHRDYVLSHTHTGLKKVPVASLVGKT 219
Query: 239 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFG 298
+GLYFSA WC+PC KF PKL+S+Y+KIK L EKG+ EDFEVV +S+DRDQ SF+SY+
Sbjct: 220 IGLYFSAEWCVPCAKFTPKLISVYEKIKHELAEKGE--EDFEVVLISSDRDQASFDSYYS 277
Query: 299 TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEA 358
TMPWLALPFGDP IK L ++++VQGIP LVIIGP+GKT+T GR+LINLYQENAYPFT+A
Sbjct: 278 TMPWLALPFGDPEIKNLVRHYNVQGIPWLVIIGPDGKTITVHGRSLINLYQENAYPFTKA 337
Query: 359 KLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLEC 418
K+E LEKQ+EEEAK LP +H GHRH+LNLVS+G GGGPFICC CDEQGS WAYQCL+C
Sbjct: 338 KVEELEKQLEEEAKGLPALVYHQGHRHDLNLVSDGNGGGPFICCVCDEQGSSWAYQCLQC 397
Query: 419 GYEVHPKCVRAVDR 432
GYEVHPKCVR V+R
Sbjct: 398 GYEVHPKCVRTVER 411
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357467067|ref|XP_003603818.1| Nucleoredoxin [Medicago truncatula] gi|355492866|gb|AES74069.1| Nucleoredoxin [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 255/388 (65%), Positives = 307/388 (79%), Gaps = 3/388 (0%)
Query: 46 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGS 105
Y+ + R G +VK+S+LEGKV L F+ANWYPPC FT +L+ +YE+L++N
Sbjct: 39 YLLASKDRDFLLSSTGTQVKISELEGKVVGLLFAANWYPPCRGFTQLLIGIYEQLKSNIP 98
Query: 106 DFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDK 165
FE+V+VSSDEDL+AFN + MPWLA+P+SDLETKKALNRK+D+EGIPCLV+LQP K
Sbjct: 99 QFEIVYVSSDEDLDAFNGFYGNMPWLAIPFSDLETKKALNRKYDVEGIPCLVMLQPDHSK 158
Query: 166 DDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPP 225
+ATL DGVELIY+YG++A+PF+KE+LE+L E+EK E QTL NLL N+ R Y+L H
Sbjct: 159 GEATLRDGVELIYRYGVQAYPFSKERLEQLHVAEREKLENQTLANLLANNHRDYVLSHTG 218
Query: 226 D---EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 282
+VPV+SLVGKT+GLYFSA WC+PC KF PKL+++YQ IKQ L EK D EDFE+V
Sbjct: 219 TGLLTQVPVASLVGKTIGLYFSAGWCVPCTKFTPKLINVYQIIKQELAEKQDPHEDFEIV 278
Query: 283 FVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 342
VS DRDQ SF+SY+ MPWLALPFGDP IK L ++FDVQGIPCLVIIGP+GKT+T GR
Sbjct: 279 LVSNDRDQESFDSYYNIMPWLALPFGDPEIKNLARHFDVQGIPCLVIIGPDGKTITIHGR 338
Query: 343 NLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICC 402
NLINLYQENAYPFT +K+E LEKQ+EEEAK+LP H GH H LNLVS+G GGGPFICC
Sbjct: 339 NLINLYQENAYPFTASKVEQLEKQLEEEAKDLPNLVHHEGHHHGLNLVSDGNGGGPFICC 398
Query: 403 DCDEQGSGWAYQCLECGYEVHPKCVRAV 430
CDEQGS WAYQCL+CGYEVHPKCV V
Sbjct: 399 VCDEQGSNWAYQCLQCGYEVHPKCVTTV 426
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517692|ref|XP_003527520.1| PREDICTED: probable nucleoredoxin 2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/374 (66%), Positives = 307/374 (82%), Gaps = 4/374 (1%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G +VKVSDLEG+V L F+ANWYPPC FT +LV +YEEL++ E+V+VSSDE+L+A
Sbjct: 35 GAQVKVSDLEGRVVGLLFAANWYPPCRGFTQILVGIYEELKSRVPQLEIVYVSSDENLDA 94
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
FN++ MPWLA+P+SDLETKK+L RK+D+E +PCL++LQP D K+ T+ DGVELIY+Y
Sbjct: 95 FNSFYGNMPWLAIPFSDLETKKSLTRKYDVEAVPCLILLQPDDRKEHVTVRDGVELIYRY 154
Query: 181 GIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPD--EKVPVSSLVGKT 238
GI+A+PF+ E+LE+LQKE+K K + QTL NLL NH R Y+L H +KVPV+ LVGKT
Sbjct: 155 GIQAYPFSNERLEQLQKEDKVKRDNQTLTNLLANHHRDYVLSHTHTGLKKVPVAWLVGKT 214
Query: 239 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFG 298
+GLYFSA WC+PC KF PKL+S+Y+KIK L KG+ EDFEVV +S+DRDQ SF+SY+
Sbjct: 215 IGLYFSAEWCVPCAKFTPKLISVYEKIKHELAGKGE--EDFEVVLISSDRDQASFDSYYS 272
Query: 299 TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEA 358
TMPWLALPFGDP IK L ++++VQGIP LVIIGP+GKT+T GR+LINLYQENAYPFT A
Sbjct: 273 TMPWLALPFGDPEIKNLVRHYNVQGIPWLVIIGPDGKTITVHGRSLINLYQENAYPFTNA 332
Query: 359 KLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLEC 418
K+E LEKQ+EEEAK LP +H GHRH+LNLVS+G GGGPFICC CDEQGS WAYQCL+C
Sbjct: 333 KVEELEKQLEEEAKGLPALVYHEGHRHDLNLVSDGNGGGPFICCVCDEQGSSWAYQCLQC 392
Query: 419 GYEVHPKCVRAVDR 432
GYEVHPKCVR V+R
Sbjct: 393 GYEVHPKCVRTVER 406
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517694|ref|XP_003527521.1| PREDICTED: probable nucleoredoxin 2-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/397 (62%), Positives = 308/397 (77%), Gaps = 27/397 (6%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G +VKVSDLEG+V L F+ANWYPPC FT +LV +YEEL++ E+V+VSSDE+L+A
Sbjct: 35 GAQVKVSDLEGRVVGLLFAANWYPPCRGFTQILVGIYEELKSRVPQLEIVYVSSDENLDA 94
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
FN++ MPWLA+P+SDLETKK+L RK+D+E +PCL++LQP D K+ T+ DGVELIY+Y
Sbjct: 95 FNSFYGNMPWLAIPFSDLETKKSLTRKYDVEAVPCLILLQPDDRKEHVTVRDGVELIYRY 154
Query: 181 GIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGH----------------- 223
GI+A+PF+ E+LE+LQKE+K K + QTL NLL NH R Y+L H
Sbjct: 155 GIQAYPFSNERLEQLQKEDKVKRDNQTLTNLLANHHRDYVLSHTHTGLKKFYLNCMQRIM 214
Query: 224 ---PPD-----EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDA 275
P D +VPV+ LVGKT+GLYFSA WC+PC KF PKL+S+Y+KIK L KG+
Sbjct: 215 DPVPGDGCCSCTQVPVAWLVGKTIGLYFSAEWCVPCAKFTPKLISVYEKIKHELAGKGE- 273
Query: 276 LEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 335
EDFEVV +S+DRDQ SF+SY+ TMPWLALPFGDP IK L ++++VQGIP LVIIGP+GK
Sbjct: 274 -EDFEVVLISSDRDQASFDSYYSTMPWLALPFGDPEIKNLVRHYNVQGIPWLVIIGPDGK 332
Query: 336 TVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTG 395
T+T GR+LINLYQENAYPFT AK+E LEKQ+EEEAK LP +H GHRH+LNLVS+G G
Sbjct: 333 TITVHGRSLINLYQENAYPFTNAKVEELEKQLEEEAKGLPALVYHEGHRHDLNLVSDGNG 392
Query: 396 GGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAVDR 432
GGPFICC CDEQGS WAYQCL+CGYEVHPKCVR V+R
Sbjct: 393 GGPFICCVCDEQGSSWAYQCLQCGYEVHPKCVRTVER 429
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 438 | ||||||
| TAIR|locus:2195623 | 578 | AT1G60420 [Arabidopsis thalian | 0.796 | 0.603 | 0.432 | 1.4e-73 | |
| TAIR|locus:2128141 | 392 | AT4G31240 [Arabidopsis thalian | 0.799 | 0.892 | 0.4 | 1.9e-67 | |
| UNIPROTKB|A6QLU8 | 435 | NXN "Nucleoredoxin" [Bos tauru | 0.285 | 0.287 | 0.417 | 8.5e-22 | |
| MGI|MGI:109331 | 435 | Nxn "nucleoredoxin" [Mus muscu | 0.285 | 0.287 | 0.417 | 6.4e-22 | |
| RGD|1310489 | 435 | Nxn "nucleoredoxin" [Rattus no | 0.285 | 0.287 | 0.417 | 1.5e-21 | |
| UNIPROTKB|Q6DKJ4 | 435 | NXN "Nucleoredoxin" [Homo sapi | 0.285 | 0.287 | 0.409 | 2.1e-21 | |
| UNIPROTKB|Q6GM16 | 414 | nxn "Nucleoredoxin" [Xenopus l | 0.269 | 0.285 | 0.426 | 2.6e-20 | |
| ZFIN|ZDB-GENE-050522-75 | 418 | nxn "nucleoredoxin" [Danio rer | 0.246 | 0.258 | 0.427 | 8.7e-31 | |
| UNIPROTKB|I3LEF2 | 328 | NXN "Uncharacterized protein" | 0.285 | 0.381 | 0.417 | 3.9e-23 | |
| UNIPROTKB|F1NG23 | 328 | NXN "Uncharacterized protein" | 0.283 | 0.378 | 0.406 | 5.6e-22 |
| TAIR|locus:2195623 AT1G60420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 159/368 (43%), Positives = 217/368 (58%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G +V VS+LEGK L FS Y C T LV+ Y +L+ N DFE+V +S ++D +
Sbjct: 193 GNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKEDFEIVLISLEDDEES 252
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV-ELIYK 179
FN PWLA+P++D K L R F + +P LV+L P D T H V E I
Sbjct: 253 FNQDFKTKPWLALPFNDKSGSK-LARHFMLSTLPTLVILGP----DGKTRHSNVAEAIDD 307
Query: 180 YGIRAFPFTXXXXXXXXXXXXXXXXRQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTV 239
YG+ A+PFT QTL +LL + D Y+LG KV VS LVGKT+
Sbjct: 308 YGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKD-GAKVLVSDLVGKTI 366
Query: 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT 299
+YFSA WC PC F PKL+ +Y++IK E+ +A FE++F+S+DRDQ SF+ Y+
Sbjct: 367 LMYFSAHWCPPCRAFTPKLVEVYKQIK----ERNEA---FELIFISSDRDQESFDEYYSQ 419
Query: 300 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAK 359
MPWLALPFGDP L K F V GIP L +GP G+TVTK+ R+L+ + +AYPFTE +
Sbjct: 420 MPWLALPFGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFTEER 479
Query: 360 LEFLEKQMEEEAKNLPRSEFHIGHR-HELNLVSEGTGGGPFICCDCDEQGSGWAYQCLEC 418
L+ +E + +E AK+ P+ H+ H HEL L T + C C+E+G+ W+Y C EC
Sbjct: 480 LKEIEAKYDEIAKDWPKKVKHVLHEEHELEL----TRVQVYTCDKCEEEGTIWSYHCDEC 535
Query: 419 GYEVHPKC 426
+++H KC
Sbjct: 536 DFDLHAKC 543
|
|
| TAIR|locus:2128141 AT4G31240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 146/365 (40%), Positives = 203/365 (55%)
Query: 63 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 122
EV + + GK L+FSA W PC +FT L+ +YE L+N G + E++FVS D D+ +F
Sbjct: 35 EVPLEYIHGKTICLFFSAIWCRPCKDFTPELIKLYENLQNRGEELEIIFVSFDHDMTSFY 94
Query: 123 NYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGI 182
+ CMPWLAVP++ L L K+ I IP LV L Y D + + D + LI YG
Sbjct: 95 EHFWCMPWLAVPFN-LSLLNKLRDKYGISRIPSLVPL--YSD-EISVAEDVIGLIEDYGS 150
Query: 183 RAFPFTXXXXXXXXXXXXXXXXRQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLY 242
AFPFT L LLT+ R Y++ KV VS LVGKT+GLY
Sbjct: 151 EAFPFTKKRKEELKAIDDSKRLGGQLEKLLTHESRNYVVARN-GSKVLVSKLVGKTIGLY 209
Query: 243 FSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 302
F A WC P F +L+ +Y ++ +KG FEV+ +STDRD F MPW
Sbjct: 210 FGAHWCPPFRSFTSQLVDVYNELATT--DKGS----FEVILISTDRDSREFNINMTNMPW 263
Query: 303 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEF 362
LA+P+ D T ++L + F+V+ IP LVIIGPE KTVT R +++LY ++PFTE+++
Sbjct: 264 LAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTTNAREMVSLYGSRSFPFTESRIVE 323
Query: 363 LEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEV 422
L+ +++E +LPR H HEL L ++C C +QG WA+ C C Y++
Sbjct: 324 LKACLKKEGDSLPRKVKDNKHEHELKLDMAKA----YVCDFCKKQGRFWAFSCNACDYDL 379
Query: 423 HPKCV 427
HP CV
Sbjct: 380 HPTCV 384
|
|
| UNIPROTKB|A6QLU8 NXN "Nucleoredoxin" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 8.5e-22, P = 8.5e-22
Identities = 53/127 (41%), Positives = 78/127 (61%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G+ ++ S LEG +YFSA+W PPC + T VLV+ Y +++ G FE++FVS+D ++
Sbjct: 183 GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEDS 242
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
F Y + MPWLAVPY+D + LNR + I+GIP L+VL P + T VE++
Sbjct: 243 FKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVEVLNDE 300
Query: 181 GIRAFPF 187
R FP+
Sbjct: 301 DCRGFPW 307
|
|
| MGI|MGI:109331 Nxn "nucleoredoxin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 6.4e-22, P = 6.4e-22
Identities = 53/127 (41%), Positives = 78/127 (61%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G+ ++ S LEG +YFSA+W PPC + T VLV+ Y +++ G +FE++FVS+D +
Sbjct: 183 GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFEIIFVSADRSEES 242
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
F Y + MPWLAVPY+D + LNR + I+GIP L+VL P + T VE++
Sbjct: 243 FKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVEVLNDE 300
Query: 181 GIRAFPF 187
R FP+
Sbjct: 301 DCREFPW 307
|
|
| RGD|1310489 Nxn "nucleoredoxin" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 53/127 (41%), Positives = 77/127 (60%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G+ ++ S LEG +YFSA+W PPC + T VLV+ Y +++ G FE++FVS+D +
Sbjct: 183 GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEES 242
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
F Y + MPWLAVPY+D + LNR + I+GIP L+VL P + T VE++
Sbjct: 243 FKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVEVLNDE 300
Query: 181 GIRAFPF 187
R FP+
Sbjct: 301 DCREFPW 307
|
|
| UNIPROTKB|Q6DKJ4 NXN "Nucleoredoxin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 270 (100.1 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 52/127 (40%), Positives = 78/127 (61%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G+ ++ S LEG +YFSA+W PPC + T VLV+ Y +++ G +FE++FVS+D +
Sbjct: 183 GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEES 242
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
F Y + MPWLAVPY+D + LNR + I+GIP L++L P + T VE++
Sbjct: 243 FKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEV--ITRQGRVEVLNDE 300
Query: 181 GIRAFPF 187
R FP+
Sbjct: 301 DCREFPW 307
|
|
| UNIPROTKB|Q6GM16 nxn "Nucleoredoxin" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 260 (96.6 bits), Expect = 2.6e-20, P = 2.6e-20
Identities = 52/122 (42%), Positives = 73/122 (59%)
Query: 67 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRA 126
S LEG +YFSA W PPC + T VLV+ Y +++ +G FE+V VS+D +F Y +
Sbjct: 168 STLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQKFEIVLVSADRSEESFKQYFS 227
Query: 127 CMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG-VELIYKYGIRAF 185
MPWLAVPYSD + LNR + I+GIP L++L P K + G VE++ + F
Sbjct: 228 EMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDP---KGEVITRQGRVEVLRDIDCKEF 284
Query: 186 PF 187
P+
Sbjct: 285 PW 286
|
|
| ZFIN|ZDB-GENE-050522-75 nxn "nucleoredoxin" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 253 (94.1 bits), Expect = 8.7e-31, Sum P(2) = 8.7e-31
Identities = 50/117 (42%), Positives = 72/117 (61%)
Query: 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 291
++L G VG+YFSA WC PC L+ Y+K+K E G + FE+VFVS DR +
Sbjct: 172 TALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVK----ETG---QKFEIVFVSADRSEE 224
Query: 292 SFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLVIIGPEGKTVTKQGR-NLIN 346
SF YF MPWLA+P+ D + L + + +QGIP L+++ EG +T+QGR ++N
Sbjct: 225 SFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILLDTEGHMITRQGRVEILN 281
|
|
| UNIPROTKB|I3LEF2 NXN "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 3.9e-23, P = 3.9e-23
Identities = 53/127 (41%), Positives = 77/127 (60%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G ++ S LEG +YFSA+W PPC + T VLV+ Y +++ G FE++FVS+D ++
Sbjct: 76 GPALESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEDS 135
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
F Y + MPWLAVPY+D + LNR + I+GIP L+VL P + T VE++
Sbjct: 136 FKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVEVLNDE 193
Query: 181 GIRAFPF 187
R FP+
Sbjct: 194 DCRGFPW 200
|
|
| UNIPROTKB|F1NG23 NXN "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 259 (96.2 bits), Expect = 5.6e-22, P = 5.6e-22
Identities = 52/128 (40%), Positives = 78/128 (60%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G+ + S LEG +YFSA+W PPC + T VLV+ Y +++ G FE++FVS+D ++
Sbjct: 76 GQTLDSSALEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEILFVSADRSEDS 135
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG-VELIYK 179
F Y + MPW+AVPY+D + LNR + I+GIP L+VL D + + G VE++
Sbjct: 136 FKQYFSEMPWVAVPYADEARRSRLNRLYGIQGIPTLIVL---DSQGEVITRQGRVEVLND 192
Query: 180 YGIRAFPF 187
R FP+
Sbjct: 193 IECREFPW 200
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0JIL1 | NRX2_ORYSJ | 1, ., 8, ., 1, ., 8 | 0.4892 | 0.8196 | 0.9111 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 438 | |||
| cd03009 | 131 | cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l | 3e-53 | |
| cd03009 | 131 | cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l | 1e-50 | |
| cd02964 | 132 | cd02964, TryX_like_family, Tryparedoxin (TryX)-lik | 5e-48 | |
| cd02964 | 132 | cd02964, TryX_like_family, Tryparedoxin (TryX)-lik | 7e-41 | |
| pfam13905 | 94 | pfam13905, Thioredoxin_8, Thioredoxin-like | 2e-26 | |
| pfam13905 | 94 | pfam13905, Thioredoxin_8, Thioredoxin-like | 7e-22 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 8e-11 | |
| cd03008 | 146 | cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like | 1e-10 | |
| pfam13098 | 105 | pfam13098, Thioredoxin_2, Thioredoxin-like domain | 2e-08 | |
| cd03008 | 146 | cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like | 7e-08 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 6e-06 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 6e-06 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 2e-05 | |
| PRK03147 | 173 | PRK03147, PRK03147, thiol-disulfide oxidoreductase | 2e-05 | |
| smart00109 | 50 | smart00109, C1, Protein kinase C conserved region | 5e-05 | |
| cd00029 | 50 | cd00029, C1, Protein kinase C conserved region 1 ( | 4e-04 | |
| cd02953 | 104 | cd02953, DsbDgamma, DsbD gamma family; DsbD gamma | 8e-04 | |
| cd02947 | 93 | cd02947, TRX_family, TRX family; composed of two g | 8e-04 | |
| pfam00130 | 53 | pfam00130, C1_1, Phorbol esters/diacylglycerol bin | 0.002 | |
| cd02950 | 142 | cd02950, TxlA, TRX-like protein A (TxlA) family; T | 0.003 | |
| pfam13098 | 105 | pfam13098, Thioredoxin_2, Thioredoxin-like domain | 0.004 | |
| pfam08534 | 142 | pfam08534, Redoxin, Redoxin | 0.004 |
| >gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 3e-53
Identities = 68/139 (48%), Positives = 89/139 (64%), Gaps = 9/139 (6%)
Query: 218 GYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALE 277
+LL + KVPVSSL GKTVGLYFSA WC PC F PKL+ Y+K+K E G +
Sbjct: 1 DFLLRNDGG-KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLK----ESG---K 52
Query: 278 DFEVVFVSTDRDQTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKT 336
+FE+VF+S DRD+ SF YF MPWLA+PF D L + F ++GIP L+I+ +G+
Sbjct: 53 NFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEV 112
Query: 337 VTKQGRNLINLYQENAYPF 355
VT R L+ Y +A+PF
Sbjct: 113 VTTDARELVLEYGADAFPF 131
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131 |
| >gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 1e-50
Identities = 66/127 (51%), Positives = 85/127 (66%), Gaps = 3/127 (2%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G +V VS LEGK LYFSA+W PPC FT LV+ YE+L+ +G +FE+VF+S D D +
Sbjct: 8 GGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEES 67
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
FN+Y + MPWLAVP+SD E + LNR F IEGIP L++L D + D EL+ +Y
Sbjct: 68 FNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIIL---DADGEVVTTDARELVLEY 124
Query: 181 GIRAFPF 187
G AFPF
Sbjct: 125 GADAFPF 131
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131 |
| >gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 5e-48
Identities = 63/133 (47%), Positives = 84/133 (63%), Gaps = 10/133 (7%)
Query: 226 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285
+ VPVS+L GKTVGLYFSA WC PC F PKL+ Y+K+K + ++FE+VFVS
Sbjct: 7 EGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLK-------EEGKNFEIVFVS 59
Query: 286 TDRDQTSFESYFGTM-PWLALPFGDPTIKE-LTKYFDVQGIPCLVIIGPEGKTVTKQGRN 343
DR + SF YF M PWLA+PF D ++E L K F V+GIP LV++ P+G VT R+
Sbjct: 60 RDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARD 119
Query: 344 LI-NLYQENAYPF 355
+ A+P+
Sbjct: 120 EVEEDPGACAFPW 132
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132 |
| >gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 7e-41
Identities = 59/129 (45%), Positives = 80/129 (62%), Gaps = 7/129 (5%)
Query: 62 EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 121
V VS LEGK LYFSA+W PPC FT LV+ YE+L+ G +FE+VFVS D +F
Sbjct: 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESF 67
Query: 122 NNYRACM-PWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH-DGVELIYK 179
N Y + M PWLAVP+ D E ++ L ++F +EGIP LVVL+P D + + + + +
Sbjct: 68 NEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKP----DGDVVTTNARDEVEE 123
Query: 180 -YGIRAFPF 187
G AFP+
Sbjct: 124 DPGACAFPW 132
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132 |
| >gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-26
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 11/102 (10%)
Query: 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 295
GK V LYF A WC PC F P+L +Y+K+K+ E+V+VS DRD+ ++
Sbjct: 1 GKVVLLYFWASWCPPCRAFTPELKELYEKLKKP---------KVEIVYVSLDRDEEEWKK 51
Query: 296 YFGTMP--WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 335
Y MP WL +PFGD EL + + V+ IP LV++ +G+
Sbjct: 52 YLKKMPKDWLNVPFGDKERNELLRLYGVKAIPTLVLLDKDGR 93
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94 |
| >gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 7e-22
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMP- 129
GKV LYF A+W PPC FT L ++YE + E+V+VS D D + Y MP
Sbjct: 1 GKVVLLYFWASWCPPCRAFTPELKELYE--KLKKPKVEIVYVSLDRDEEEWKKYLKKMPK 58
Query: 130 -WLAVPYSDLETKKALNRKFDIEGIPCLVVLQP 161
WL VP+ D + + L R + ++ IP LV+L
Sbjct: 59 DWLNVPFGD-KERNELLRLYGVKAIPTLVLLDK 90
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 8e-11
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 226 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285
+ V +S L GK V + F A WC PC MP+L ++ ++ K + EVV V+
Sbjct: 9 GKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKD---------DGVEVVGVN 59
Query: 286 TDRDQTS-FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340
D D + +++ + P EL K + V+G+P +I +G+ +
Sbjct: 60 VDDDDPAAVKAFLKKYG-ITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARH 114
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-10
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNL-VEKGDALEDFEVVFVS 285
E+ V+ L + + L+F A C+ F PKL + ++ V++ L +V+VS
Sbjct: 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLA---LVYVS 72
Query: 286 TDRDQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 341
D+ + ES+ MP WL LPF D +EL F V+ +P +V++ P+G +
Sbjct: 73 MDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANA 130
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146 |
| >gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-08
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 17/104 (16%)
Query: 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 295
GK V + F+ C C+K +LL ++ E ++F V++V+ D +
Sbjct: 5 GKPVLVVFTDPDCPYCKKLHKELLKD-----PDVQEYLK--DNFVVIYVNVDDSK----- 52
Query: 296 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339
+ KEL + + V+G P +V + +GK V +
Sbjct: 53 -----EVTDFDGETLSEKELARKYGVRGTPTIVFLDGDGKEVAR 91
|
Length = 105 |
| >gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 7e-08
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 62 EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN-----GSDFEVVFVSSDE 116
E V+ LE +V L+F A P C F L D + L + + +V+VS D+
Sbjct: 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ 75
Query: 117 DLNAFNNYRACMP--WLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV 174
++ MP WL +P+ D E ++ L +F +E +P +VVL+P D + V
Sbjct: 76 SEQQQESFLKDMPKKWLFLPFED-EFRRELEAQFSVEELPTVVVLKP---DGDVLAANAV 131
Query: 175 ELIYKYGIRAF 185
+ I + G F
Sbjct: 132 DEILRLGPACF 142
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 6e-06
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 61 GEEVKVSDLEGKVTALYF-SANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD--ED 117
G+EV +SD +GK L+F ++ P C L D+YEE + G EV+ VS D E
Sbjct: 15 GKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLG--VEVLGVSVDSPES 72
Query: 118 LNAFNN-YRACMPWLAVPYSDLETKKALNRKFDI 150
F P L SD + + + +
Sbjct: 73 HKKFAEKLGLPFPLL----SD--PDGEVAKAYGV 100
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 6e-06
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 24/119 (20%)
Query: 227 EKVPVSSLVGKTVGLYF-SARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285
++V +S GK V L+F + C +P L + + + G EV+ VS
Sbjct: 16 KEVSLSDYKGKWVVLFFYPKDFTPVCTTELPAL----ADLYEEFKKLG-----VEVLGVS 66
Query: 286 TDR--DQTSF-ESYFGTMPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGK 335
D F E P L+ DP E+ K + V + +I P+GK
Sbjct: 67 VDSPESHKKFAEKLGLPFPLLS----DPD-GEVAKAYGVLNEEEGLALRTTFVIDPDGK 120
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-05
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117
G+ V +SDL+GKV + F A+W PPC L + +E +++G EVV V+ D+D
Sbjct: 9 GKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDD 63
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
+K+ + L GK V L F WC PCEK MP + +Y K K EKG E++ V+
Sbjct: 52 KKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYK----EKG-----VEIIAVNV 102
Query: 287 DRDQTSFESY---FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 337
D + + +++ +G L P +++ + V +P +I +GK V
Sbjct: 103 DETELAVKNFVNRYG----LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVV 152
|
Length = 173 |
| >gnl|CDD|197519 smart00109, C1, Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-05
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 8/51 (15%)
Query: 383 HRHELNLVSEGTGGGPFICCDCDEQ---GSGWAYQCLECGYEVHPKCVRAV 430
H+H T P CC C + +C EC + H KC V
Sbjct: 1 HKHV-----FRTFTKPTFCCVCRKSIWGSFKQGLRCSECKVKCHKKCADKV 46
|
Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains. Length = 50 |
| >gnl|CDD|237996 cd00029, C1, Protein kinase C conserved region 1 (C1) | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 4e-04
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 392 EGTGGGPFICCDCDEQ---GSGWAYQCLECGYEVHPKCVRAV 430
+ P C C + +C C + H KC V
Sbjct: 5 RKSFFKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKV 46
|
Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis). Length = 50 |
| >gnl|CDD|239251 cd02953, DsbDgamma, DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 8e-04
Identities = 27/101 (26%), Positives = 34/101 (33%), Gaps = 30/101 (29%)
Query: 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 295
GK V + F+A WC+ C K N E V S Q + +
Sbjct: 11 GKPVFVDFTADWCVTC--------------KVN-----------EKVVFSDPEVQAALKK 45
Query: 296 YFGTM--PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEG 334
+ W DP I L K F V G P + GP G
Sbjct: 46 DVVLLRADWTK---NDPEITALLKRFGVFGPPTYLFYGPGG 83
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. Length = 104 |
| >gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 8e-04
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 34/95 (35%)
Query: 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 295
K V + F A WC PC+ P L + L E+ +V FV D D+
Sbjct: 10 AKPVVVDFWAPWCGPCKAIAPVL--------EELAEEYP-----KVKFVKVDVDEN---- 52
Query: 296 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVII 330
EL + + V+ IP +
Sbjct: 53 -----------------PELAEEYGVRSIPTFLFF 70
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93 |
| >gnl|CDD|215738 pfam00130, C1_1, Phorbol esters/diacylglycerol binding domain (C1 domain) | Back alignment and domain information |
|---|
Score = 35.9 bits (83), Expect = 0.002
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 401 CCDCDE---QGSGWAYQCLECGYEVHPKCVRAVD 431
C C E +C CG VH +C V
Sbjct: 14 CDHCGEFLWGLGKQGLKCSWCGLNVHKRCHSLVP 47
|
This domain is also known as the Protein kinase C conserved region 1 (C1) domain. Length = 53 |
| >gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 42/153 (27%)
Query: 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 295
GK + F A WC C++ P + + QK + +F V ++ D +
Sbjct: 20 GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQV--------NF--VMLNVDNPK----- 64
Query: 296 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIG----PEGKTVTKQGR-----NLIN 346
WL E+ +Y V GIP V + EG+++ Q + NL
Sbjct: 65 ------WL---------PEIDRY-RVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDA 108
Query: 347 LYQENAYPFTEAKLEF--LEKQMEEEAKNLPRS 377
L P+ A + L+ +++ PRS
Sbjct: 109 LVAGEPLPYANAVGQTSELKSPKNPSSQDDPRS 141
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. Length = 142 |
| >gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.004
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 17/95 (17%)
Query: 70 EGKVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRA 126
GK + F+ P C L+ DV E L++N F V++V+ D+ +
Sbjct: 4 NGKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDN---FVVIYVNVDDSKEVTDFDGE 60
Query: 127 CMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQP 161
+ ++K L RK+ + G P +V L
Sbjct: 61 TL-----------SEKELARKYGVRGTPTIVFLDG 84
|
Length = 105 |
| >gnl|CDD|219888 pfam08534, Redoxin, Redoxin | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.004
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 61 GEEVKVSDLEGKVTALYF-SANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN 119
G+ V +SD +GK L F + P C L + + + G +VV V++ D
Sbjct: 17 GKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKG--VDVVAVNASND-- 72
Query: 120 AFNNYRAC 127
F
Sbjct: 73 PFFVMNFW 80
|
This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 438 | |||
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.91 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.9 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.9 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.89 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.88 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.87 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.84 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 99.84 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 99.82 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.82 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.81 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.81 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.8 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.8 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.8 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.8 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.79 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.79 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.79 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.79 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.78 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 99.78 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 99.78 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.78 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.77 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.77 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.77 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.77 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.76 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.76 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.76 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.75 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.75 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.75 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 99.75 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.74 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 99.74 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.74 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.74 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.73 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.73 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.73 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.72 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 99.72 | |
| PRK15000 | 200 | peroxidase; Provisional | 99.71 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.71 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.71 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 99.71 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.7 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.7 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.7 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.7 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 99.69 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.69 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.69 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.69 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 99.69 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 99.69 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.68 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.68 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 99.68 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.68 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.68 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 99.68 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.67 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.66 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.65 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 99.65 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.65 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.65 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.64 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.64 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.64 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.63 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.62 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.62 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 99.62 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.61 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.61 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 99.6 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.6 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.59 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.59 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.59 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.58 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.57 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.56 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 99.55 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 99.54 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.54 | |
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 99.53 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.53 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 99.53 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.51 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 99.5 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.49 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.49 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 99.49 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.49 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.49 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 99.48 | |
| PRK15000 | 200 | peroxidase; Provisional | 99.48 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 99.47 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.46 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.46 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.45 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.45 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.43 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 99.43 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 99.42 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.42 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.42 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.41 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.41 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.4 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.38 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.37 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.35 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 99.35 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.35 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.34 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.34 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.34 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.33 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.33 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.33 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.33 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.33 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.31 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.31 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.3 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.3 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.3 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.3 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.3 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.29 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.29 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.29 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.28 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.28 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.27 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.27 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.26 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.26 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.26 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.25 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.25 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.24 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.24 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.24 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.23 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.22 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.22 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.21 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.21 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.21 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.21 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 99.2 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.2 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 99.19 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.19 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.18 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.18 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 99.17 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.17 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.17 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 99.16 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 99.16 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 99.16 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.15 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.15 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.15 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.14 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.13 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.12 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 99.12 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 99.12 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.12 | |
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 99.12 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 99.12 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 99.11 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.11 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.11 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.11 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 99.1 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.09 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.09 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 99.08 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.08 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.08 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 99.07 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 99.07 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 99.07 | |
| KOG2792 | 280 | consensus Putative cytochrome C oxidase assembly p | 99.07 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.07 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.06 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.06 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 99.06 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 99.05 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.04 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.04 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 99.03 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.03 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.03 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.03 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 99.02 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 99.01 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 99.01 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.0 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 98.98 | |
| KOG0855 | 211 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.97 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 98.97 | |
| KOG0852 | 196 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.96 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 98.96 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 98.96 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 98.96 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 98.95 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 98.94 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 98.94 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 98.92 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 98.92 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 98.91 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 98.91 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.91 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 98.89 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.88 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 98.88 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 98.87 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.85 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.85 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 98.83 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.83 | |
| KOG2792 | 280 | consensus Putative cytochrome C oxidase assembly p | 98.83 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 98.82 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 98.81 | |
| KOG1651 | 171 | consensus Glutathione peroxidase [Posttranslationa | 98.77 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 98.75 | |
| KOG0855 | 211 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.74 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 98.74 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 98.73 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.7 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.68 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.68 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.66 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.66 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 98.66 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 98.65 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 98.62 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 98.61 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.61 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.61 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 98.56 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.54 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.53 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.53 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 98.47 | |
| PF07649 | 30 | C1_3: C1-like domain; InterPro: IPR011424 This sho | 98.46 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 98.45 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 98.42 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 98.41 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 98.4 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.4 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.39 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 98.38 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 98.38 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 98.36 | |
| KOG0854 | 224 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.36 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.35 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 98.34 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.33 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 98.31 | |
| KOG0852 | 196 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.31 | |
| PF03107 | 30 | C1_2: C1 domain; InterPro: IPR004146 This short do | 98.3 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 98.28 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 98.28 | |
| smart00594 | 122 | UAS UAS domain. | 98.25 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 98.24 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 98.23 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.21 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 98.19 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 98.14 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.11 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 98.1 | |
| smart00594 | 122 | UAS UAS domain. | 98.04 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 98.04 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 98.04 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 98.03 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 98.01 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 97.96 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 97.89 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 97.88 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 97.85 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 97.81 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 97.79 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 97.78 | |
| KOG0914 | 265 | consensus Thioredoxin-like protein [Posttranslatio | 97.67 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 97.67 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 97.64 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 97.61 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 97.57 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 97.57 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 97.56 | |
| KOG0854 | 224 | consensus Alkyl hydroperoxide reductase, thiol spe | 97.54 | |
| KOG1651 | 171 | consensus Glutathione peroxidase [Posttranslationa | 97.48 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 97.45 | |
| cd02340 | 43 | ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre | 97.45 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 97.44 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 97.43 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 97.41 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 97.4 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 97.35 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 97.34 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 97.32 | |
| cd02343 | 48 | ZZ_EF Zinc finger, ZZ type. Zinc finger present in | 97.19 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 97.12 | |
| cd02339 | 45 | ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre | 97.08 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 97.05 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 97.03 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 97.02 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 97.02 | |
| cd02249 | 46 | ZZ Zinc finger, ZZ type. Zinc finger present in dy | 96.97 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 96.96 | |
| cd02334 | 49 | ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr | 96.95 | |
| cd02342 | 43 | ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre | 96.95 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 96.86 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 96.83 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 96.77 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 96.7 | |
| cd02344 | 45 | ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present | 96.68 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 96.62 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 96.61 | |
| cd02335 | 49 | ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present | 96.59 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 96.51 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 96.51 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 96.49 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 96.45 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 96.45 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 96.44 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 96.43 | |
| smart00291 | 44 | ZnF_ZZ Zinc-binding domain, present in Dystrophin, | 96.42 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 96.4 | |
| cd02341 | 48 | ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present | 96.39 | |
| PF00569 | 46 | ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc | 96.37 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 96.34 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 96.32 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 96.23 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 96.22 | |
| KOG0914 | 265 | consensus Thioredoxin-like protein [Posttranslatio | 96.19 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 96.19 | |
| cd02338 | 49 | ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre | 96.11 | |
| cd02345 | 49 | ZZ_dah Zinc finger, ZZ type. Zinc finger present i | 96.02 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 95.75 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 95.71 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 95.7 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 95.59 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 95.57 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 95.28 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 95.26 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 95.14 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 95.12 | |
| cd02337 | 41 | ZZ_CBP Zinc finger, ZZ type. Zinc finger present i | 95.11 | |
| COG1331 | 667 | Highly conserved protein containing a thioredoxin | 94.99 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 94.99 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 94.88 | |
| KOG4582 | 278 | consensus Uncharacterized conserved protein, conta | 94.82 | |
| PF05176 | 252 | ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th | 94.78 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 94.78 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 94.77 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 94.68 | |
| KOG0913 | 248 | consensus Thiol-disulfide isomerase and thioredoxi | 94.61 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 94.57 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 94.56 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 94.51 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 94.46 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 94.45 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 94.45 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 94.44 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 94.43 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 94.41 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 94.38 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 94.37 | |
| KOG1672 | 211 | consensus ATP binding protein [Posttranslational m | 94.16 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 94.11 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 94.0 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 93.89 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 93.86 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 93.61 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 93.48 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 93.35 | |
| KOG0913 | 248 | consensus Thiol-disulfide isomerase and thioredoxi | 93.31 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 93.27 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 93.17 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 93.12 | |
| PF09695 | 160 | YtfJ_HI0045: Bacterial protein of unknown function | 93.03 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 92.9 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 92.76 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 92.73 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 92.54 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 92.51 | |
| KOG3414 | 142 | consensus Component of the U4/U6.U5 snRNP/mitosis | 92.5 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 92.4 | |
| cd02336 | 45 | ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present | 92.18 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 92.07 | |
| PF02966 | 133 | DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th | 91.98 | |
| KOG3414 | 142 | consensus Component of the U4/U6.U5 snRNP/mitosis | 91.8 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 91.79 | |
| PF13911 | 115 | AhpC-TSA_2: AhpC/TSA antioxidant enzyme | 91.69 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 91.6 | |
| PF00130 | 53 | C1_1: Phorbol esters/diacylglycerol binding domain | 91.5 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 91.21 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 91.11 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 90.53 | |
| KOG1752 | 104 | consensus Glutaredoxin and related proteins [Postt | 90.27 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 90.17 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 90.04 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 89.66 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 89.44 | |
| PF02966 | 133 | DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th | 89.12 | |
| PRK10824 | 115 | glutaredoxin-4; Provisional | 89.07 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 88.93 | |
| PF05768 | 81 | DUF836: Glutaredoxin-like domain (DUF836); InterPr | 88.81 | |
| KOG1752 | 104 | consensus Glutaredoxin and related proteins [Postt | 88.66 | |
| cd00029 | 50 | C1 Protein kinase C conserved region 1 (C1) . Cyst | 88.44 | |
| KOG2603 | 331 | consensus Oligosaccharyltransferase, gamma subunit | 88.34 | |
| PF13778 | 118 | DUF4174: Domain of unknown function (DUF4174) | 88.23 | |
| KOG3507 | 62 | consensus DNA-directed RNA polymerase, subunit RPB | 88.16 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 88.0 | |
| COG4545 | 85 | Glutaredoxin-related protein [Posttranslational mo | 86.08 | |
| PRK10824 | 115 | glutaredoxin-4; Provisional | 86.02 | |
| COG1331 | 667 | Highly conserved protein containing a thioredoxin | 85.76 | |
| PF05768 | 81 | DUF836: Glutaredoxin-like domain (DUF836); InterPr | 85.3 | |
| PRK10954 | 207 | periplasmic protein disulfide isomerase I; Provisi | 84.03 | |
| PF10571 | 26 | UPF0547: Uncharacterised protein family UPF0547; I | 83.83 | |
| KOG1672 | 211 | consensus ATP binding protein [Posttranslational m | 83.12 | |
| PRK10954 | 207 | periplasmic protein disulfide isomerase I; Provisi | 82.21 | |
| PRK12759 | 410 | bifunctional gluaredoxin/ribonucleoside-diphosphat | 81.44 | |
| KOG0541 | 171 | consensus Alkyl hydroperoxide reductase/peroxiredo | 80.63 |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-24 Score=180.15 Aligned_cols=130 Identities=51% Similarity=1.004 Sum_probs=118.8
Q ss_pred CCccCCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHH
Q 013684 218 GYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYF 297 (438)
Q Consensus 218 ~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 297 (438)
||..+.+|+ .+++++++||+++|+||++||++|+.++|.+.++++++.++ +.+++|++|++|.+.+.+++++
T Consensus 1 ~~l~~~~G~-~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~-------~~~~~vv~is~d~~~~~~~~~~ 72 (131)
T cd03009 1 DFLLRNDGG-KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKES-------GKNFEIVFISWDRDEESFNDYF 72 (131)
T ss_pred CcccccCCC-CccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhc-------CCCEEEEEEECCCCHHHHHHHH
Confidence 344588999 99999999999999999999999999999999999999864 4579999999999999999999
Q ss_pred hcCCCcccccCC-chhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCC
Q 013684 298 GTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF 355 (438)
Q Consensus 298 ~~~~~~~~p~~~-d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~ 355 (438)
++++|..+|+.. +....+.+.|+|.++|+++|||++|+++.+++++++..+|..+|||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 73 SKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred HcCCeeEcccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 999998888765 5567899999999999999999999999999999999999999986
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.90 E-value=9e-24 Score=180.83 Aligned_cols=124 Identities=27% Similarity=0.537 Sum_probs=106.9
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCC--Cccc
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP--WLAL 305 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~--~~~~ 305 (438)
.+++++++||+++|+|||+|||+|++++|.|.+++++++++. .-+...+++||+|+.|.+.+.+++|+++++ |+.+
T Consensus 17 ~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~--~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~ 94 (146)
T cd03008 17 REIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEF--YVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFL 94 (146)
T ss_pred cccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhc--ccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceee
Confidence 567889999999999999999999999999999999887530 000124799999999998888999999988 7777
Q ss_pred ccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCC
Q 013684 306 PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAY 353 (438)
Q Consensus 306 p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~ 353 (438)
|+..+....+.++|++.++|+++|||++|+|+.++++..|..+|..+|
T Consensus 95 p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 95 PFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred cccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 887776779999999999999999999999999999999888876553
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-23 Score=176.26 Aligned_cols=129 Identities=50% Similarity=0.942 Sum_probs=119.2
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccC
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY 135 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~ 135 (438)
+.+.+|+.+++++++||+|+|+||++||++|+.++|.|.++++++++.+.+++|++|++|.+.+.+.+++++++|..+++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~ 82 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPF 82 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEccc
Confidence 35899999999999999999999999999999999999999999987645699999999999999999999999988888
Q ss_pred CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccchhHHhhhCCCCccC
Q 013684 136 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 187 (438)
Q Consensus 136 ~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~ 187 (438)
.+.+....+++.|++.++|+++|||+ +|+++.+++.+++..++.++|||
T Consensus 83 ~~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 83 SDRERRSRLNRTFKIEGIPTLIILDA---DGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred CCHHHHHHHHHHcCCCCCCEEEEECC---CCCEEcccHHHHHhhcccccCCC
Confidence 66455578999999999999999999 99999999999999999999996
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-23 Score=175.47 Aligned_cols=121 Identities=31% Similarity=0.579 Sum_probs=107.0
Q ss_pred CEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcC-----CCCEEEEEEecCCCHHHHHHhHhcCC--ccccc
Q 013684 62 EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN-----GSDFEVVFVSSDEDLNAFNNYRACMP--WLAVP 134 (438)
Q Consensus 62 ~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-----~~~~~iv~vs~D~~~~~~~~~~~~~~--~~~~~ 134 (438)
+.+++++++||+|+|+|||+|||+|+.++|.|.+++++++++ +.+++||+||.|.+.+++++|+++++ |+.+|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 356789999999999999999999999999999999988763 23599999999999999999999887 88888
Q ss_pred CCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccchhHHhhhCCCCcc
Q 013684 135 YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFP 186 (438)
Q Consensus 135 ~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p 186 (438)
+.+. ....+.+.|++.++|+++|||+ +|+++.+++.+.++++|..+|.
T Consensus 96 ~~~~-~~~~l~~~y~v~~iPt~vlId~---~G~Vv~~~~~~~i~~~g~~~~~ 143 (146)
T cd03008 96 FEDE-FRRELEAQFSVEELPTVVVLKP---DGDVLAANAVDEILRLGPACFR 143 (146)
T ss_pred ccch-HHHHHHHHcCCCCCCEEEEECC---CCcEEeeChHHHHHHHHHHHHH
Confidence 7553 2368999999999999999999 9999999999999999876653
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-22 Score=170.10 Aligned_cols=128 Identities=50% Similarity=0.952 Sum_probs=111.5
Q ss_pred CccCCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHh
Q 013684 219 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFG 298 (438)
Q Consensus 219 f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 298 (438)
|.+|.+ + .+++++++||+++|+||++||++|+.++|.|++++++++++ ..+++|++|++|.+.+.+++|++
T Consensus 2 ~~~~~~-~-~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~-------~~~v~vi~Vs~d~~~~~~~~~~~ 72 (132)
T cd02964 2 FLLDGE-G-VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEE-------GKNFEIVFVSRDRSEESFNEYFS 72 (132)
T ss_pred ccccCC-c-cccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhc-------CCCeEEEEEecCCCHHHHHHHHh
Confidence 334555 5 89999999999999999999999999999999999999853 24799999999999899999999
Q ss_pred cC-CCcccccCC-chhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhh-ccccCCCC
Q 013684 299 TM-PWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINL-YQENAYPF 355 (438)
Q Consensus 299 ~~-~~~~~p~~~-d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~-~g~~~~~~ 355 (438)
++ +|..+++.. +....+.+.|+|.++|+++|||++|+++++++...+.. +|..+||+
T Consensus 73 ~~~~~~~~~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 73 EMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cCCCeEeeccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 98 588888765 34567888999999999999999999999999888765 88888885
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=167.33 Aligned_cols=123 Identities=48% Similarity=0.892 Sum_probs=110.2
Q ss_pred CEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcC-CcccccCCChHH
Q 013684 62 EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM-PWLAVPYSDLET 140 (438)
Q Consensus 62 ~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~-~~~~~~~~d~~~ 140 (438)
+.+++++++||+++|+||++||++|+.++|.|+++++++++.+.+++|++|++|.+.+++.++++++ +|..+++.+...
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 87 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEEL 87 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHH
Confidence 5899999999999999999999999999999999999998763459999999999999999999998 688888766444
Q ss_pred HHHHhhhcCcCccceEEEecCCCCCCCcccccchhHHhh-hCCCCccC
Q 013684 141 KKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYK-YGIRAFPF 187 (438)
Q Consensus 141 ~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~-~~~~a~p~ 187 (438)
...+.+.|++.++|+++|||+ +|+++.+++.+.+.. ++..+|||
T Consensus 88 ~~~~~~~~~v~~iPt~~lid~---~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 88 RELLEKQFKVEGIPTLVVLKP---DGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred HHHHHHHcCCCCCCEEEEECC---CCCEEchhHHHHHHhCcccccCCC
Confidence 478889999999999999999 999999999876666 99999986
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-20 Score=162.99 Aligned_cols=117 Identities=29% Similarity=0.491 Sum_probs=106.6
Q ss_pred hhcCCCCCcc-C--CCCCceeeccccCCCEEEEEEecC-CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 212 LTNHDRGYLL-G--HPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 212 ~g~~~~~f~l-~--~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
+|..+|+|++ + .+|+ .+++++++||+++|+||++ |||+|..++|.+.+++++++++ ++.+|+|+.+
T Consensus 2 ~G~~~P~~~~~~~~~~g~-~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~---------~v~~v~v~~~ 71 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGK-PVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK---------GVDVVGVSSD 71 (146)
T ss_dssp TTSB--CCEEEEEETTSE-EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT---------TCEEEEEEES
T ss_pred CCCCCCCeEEEeecCCCC-EecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC---------ceEEEEeccc
Confidence 5889999998 6 9999 9999999999999999999 9999999999999999999876 7999999999
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcC---------ceeeEEEECCCCcEEEcc
Q 013684 288 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~~ 340 (438)
.+.. +.+++++.+ +++|+..|....+.+.|++. ++|+++|||++|+|++.+
T Consensus 72 ~~~~-~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 72 DDPP-VREFLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp SSHH-HHHHHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred CCHH-HHHHHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 7766 888888866 88999999999999999998 999999999999999984
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=158.14 Aligned_cols=123 Identities=47% Similarity=0.872 Sum_probs=113.0
Q ss_pred cc-CCCCCceeecc-ccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHH
Q 013684 220 LL-GHPPDEKVPVS-SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYF 297 (438)
Q Consensus 220 ~l-~~~g~~~~~l~-~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 297 (438)
.+ ..+|. .+..+ .++||+|+++|.|.|||+|+.+.|.|.++|++++++ +..++||+||.|.+.+++..|+
T Consensus 16 ~l~~~~~~-~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~-------~~~fEVvfVS~D~~~~~~~~y~ 87 (157)
T KOG2501|consen 16 RLRKQDGT-EVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDN-------AAPFEVVFVSSDRDEESLDEYM 87 (157)
T ss_pred eeeccCCc-cchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhc-------CCceEEEEEecCCCHHHHHHHH
Confidence 44 77777 66665 789999999999999999999999999999999976 5689999999999999999999
Q ss_pred hc--CCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccc
Q 013684 298 GT--MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQE 350 (438)
Q Consensus 298 ~~--~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~ 350 (438)
.+ +.|+.+|+.++..+++.++|+|.++|++++++++|+++..+|+.++...|.
T Consensus 88 ~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 88 LEHHGDWLAIPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred HhcCCCeEEecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 86 569999999999999999999999999999999999999999999988874
|
|
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-20 Score=155.25 Aligned_cols=123 Identities=45% Similarity=0.788 Sum_probs=113.8
Q ss_pred ccCCCCCEEecc-ccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhc--CCccc
Q 013684 56 STKEIGEEVKVS-DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC--MPWLA 132 (438)
Q Consensus 56 ~~~~~g~~v~l~-~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~--~~~~~ 132 (438)
+.+.+|..+..+ .++||+|.++|.|.|||+||.+.|.|.++|+++++++.+++||+||.|++.+++.+|+.. ++|++
T Consensus 17 l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~ 96 (157)
T KOG2501|consen 17 LRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLA 96 (157)
T ss_pred eeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEE
Confidence 568888888776 689999999999999999999999999999999999889999999999999999999995 67999
Q ss_pred ccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccchhHHhhhCC
Q 013684 133 VPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGI 182 (438)
Q Consensus 133 ~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~ 182 (438)
+||.+... +++.+.|.|.++|++.++++ +|+++..++...+...+.
T Consensus 97 iPf~d~~~-~~l~~ky~v~~iP~l~i~~~---dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 97 IPFGDDLI-QKLSEKYEVKGIPALVILKP---DGTVVTEDARLLVQLGGS 142 (157)
T ss_pred ecCCCHHH-HHHHHhcccCcCceeEEecC---CCCEehHhhHHHHHhhcc
Confidence 99977655 89999999999999999999 999999999999988874
|
|
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=159.49 Aligned_cols=149 Identities=12% Similarity=0.166 Sum_probs=123.9
Q ss_pred hcCCCCCcc-CCCCCceeecccc-CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--
Q 013684 213 TNHDRGYLL-GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 288 (438)
Q Consensus 213 g~~~~~f~l-~~~g~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-- 288 (438)
|..+|+|.+ +.+|+ .++++++ +||++||+||++|||.|...++.|.+++++|+++ ++++|+|++|.
T Consensus 1 g~~~p~f~l~~~~g~-~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~---------~v~~v~is~d~~~ 70 (171)
T cd02969 1 GSPAPDFSLPDTDGK-TYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK---------GVAVVAINSNDIE 70 (171)
T ss_pred CCcCCCccccCCCCC-EEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC---------CeEEEEEecCccc
Confidence 467899999 99999 9999998 8999999999999999999999999999999865 79999999975
Q ss_pred -----CHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHH
Q 013684 289 -----DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFL 363 (438)
Q Consensus 289 -----~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L 363 (438)
+.+.+++++++++ +.+|+..|....+.+.|++..+|+++|||++|+|++....+.. .+. ........+|
T Consensus 71 ~~~~d~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~--~~~---~~~~~~~~~~ 144 (171)
T cd02969 71 AYPEDSPENMKAKAKEHG-YPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDS--RPG---NDPPVTGRDL 144 (171)
T ss_pred cccccCHHHHHHHHHHCC-CCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccCC--ccc---ccccccHHHH
Confidence 5788999999887 6699999988999999999999999999999999987532210 000 0133445778
Q ss_pred HHHHHHHhccCCCc
Q 013684 364 EKQMEEEAKNLPRS 377 (438)
Q Consensus 364 ~~~i~~~~~~~~~~ 377 (438)
..+|+.++.+....
T Consensus 145 ~~~i~~~l~~~~~~ 158 (171)
T cd02969 145 RAALDALLAGKPVP 158 (171)
T ss_pred HHHHHHHHcCCCCC
Confidence 88888877766543
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-19 Score=153.03 Aligned_cols=116 Identities=28% Similarity=0.548 Sum_probs=108.0
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecC-CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|.||++ |||+|...++.|++++++|+++ ++++++|+.| +
T Consensus 1 vG~~~P~f~l~~~~g~-~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~---------~~~vi~is~d-~ 69 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGK-TVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK---------GVQVIGISTD-D 69 (124)
T ss_dssp TTSBGGCEEEETTTSE-EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT---------TEEEEEEESS-S
T ss_pred CcCCCCCcEeECCCCC-EEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccc---------eEEeeecccc-c
Confidence 5889999999 99999 9999999999999999999 9999999999999999999976 8999999997 5
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEc
Q 013684 290 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 339 (438)
.++.+++.+.++ +.+|+..|....+.+.|++. .+|++||||++|+|+++
T Consensus 70 ~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 70 PEEIKQFLEEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHHHHHHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred ccchhhhhhhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 568888888877 88999999999999999998 99999999999999974
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-19 Score=148.51 Aligned_cols=110 Identities=22% Similarity=0.376 Sum_probs=96.4
Q ss_pred CCCcc-CCCCCceeeccccC-CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 013684 217 RGYLL-GHPPDEKVPVSSLV-GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 294 (438)
Q Consensus 217 ~~f~l-~~~g~~~~~l~~~~-gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 294 (438)
|+|.+ +.+|+ .+++++++ ||+++|+||++||++|+.++|.++++++++.+ ++.++.++ +.+.++++
T Consensus 1 p~f~l~~~~G~-~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~----------~~~vi~v~-~~~~~~~~ 68 (114)
T cd02967 1 PTFDLTTIDGA-PVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD----------WLDVVLAS-DGEKAEHQ 68 (114)
T ss_pred CCceeecCCCC-EEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC----------CcEEEEEe-CCCHHHHH
Confidence 68899 99999 99999997 99999999999999999999999999888753 47888776 66788999
Q ss_pred HHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 295 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 295 ~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++++++...+|+..+ ..+.+.|++.++|++++||++|++++++
T Consensus 69 ~~~~~~~~~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 69 RFLKKHGLEAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HHHHHhCCCCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 9999988546787653 5688999999999999999999999874
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-19 Score=160.60 Aligned_cols=116 Identities=19% Similarity=0.159 Sum_probs=98.9
Q ss_pred hhhhcCCCCCcc-CCCC--Cceeecccc-CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 210 NLLTNHDRGYLL-GHPP--DEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 210 ~~~g~~~~~f~l-~~~g--~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
..+|..+|+|++ +.+| + .++++.+ +||+++|+||++||++|++++|.|.++.+ + +++|++|+
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~-~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~---------~~~vi~v~ 104 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQ-FYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q---------GIRVVGMN 104 (185)
T ss_pred hhcCCCCCCcCCccCCCCCc-cccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c---------CCEEEEEE
Confidence 346888999999 8874 6 6666665 79999999999999999999999987743 2 58999999
Q ss_pred cCCCHHHHHHHHhcCCCcccc-cCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~~~~~~p-~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+++.+..++|+++++ +.+| +..|....+.+.||+.++|++|+||++|+++++.
T Consensus 105 ~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 105 YKDDRQKAISWLKELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred CCCCHHHHHHHHHHcC-CCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence 9888888999999887 5666 3567778899999999999999999999999885
|
|
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-19 Score=143.21 Aligned_cols=93 Identities=45% Similarity=0.924 Sum_probs=84.5
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC--CCcccccCCchhH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM--PWLALPFGDPTIK 313 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~--~~~~~p~~~d~~~ 313 (438)
||+++|+||++||++|++++|.|.++++++++. .+++||+|++|.+.++++++++++ +|..+++..+...
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~--------~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKK--------DDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNS 72 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--------CCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHH
Confidence 799999999999999999999999999999832 379999999999999999999988 7999999999899
Q ss_pred HHHHhcCcCceeeEEEECCCCcE
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i 336 (438)
.+.+.|+|.++|+++|+|++|+|
T Consensus 73 ~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 73 ELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHTT-TSSSEEEEEETTSBE
T ss_pred HHHHHCCCCcCCEEEEECCCCCC
Confidence 99999999999999999999986
|
... |
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-19 Score=157.98 Aligned_cols=119 Identities=25% Similarity=0.484 Sum_probs=110.5
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+...+.+.++++++.+. ++++++|++|.+
T Consensus 36 ~~g~~~p~~~~~~~~g~-~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~---------~~~vi~i~~d~~ 105 (173)
T PRK03147 36 QVGKEAPNFVLTDLEGK-KIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK---------GVEIIAVNVDET 105 (173)
T ss_pred CCCCCCCCcEeecCCCC-EEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC---------CeEEEEEEcCCC
Confidence 36788999999 99999 99999999999999999999999999999999999999865 799999999999
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+.++.++++++ +.+|+..|....+.+.|++.++|+++++|++|+++...
T Consensus 106 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~ 155 (173)
T PRK03147 106 ELAVKNFVNRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVI 155 (173)
T ss_pred HHHHHHHHHHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEE
Confidence 999999999887 78898888889999999999999999999999999763
|
|
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-19 Score=164.27 Aligned_cols=120 Identities=14% Similarity=0.199 Sum_probs=98.5
Q ss_pred hhhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-
Q 013684 210 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 287 (438)
Q Consensus 210 ~~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d- 287 (438)
...|..+|+|++ +.+|+ .+++++++||+++|+||++||++|..++|.|++++++|+++ +++||+|++|
T Consensus 73 ~~~g~~aPdF~l~d~~G~-~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~---------Gv~VIgV~~d~ 142 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGK-DVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ---------GFEILAFPCNQ 142 (236)
T ss_pred hhcCCCCCceEEECCCCC-EEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC---------CcEEEEEeccc
Confidence 346788999999 99999 99999999999999999999999999999999999999876 8999999985
Q ss_pred ------CCHHHHHHHH-hcCCCcccccCC--chhH-HHHHhcC-------------cCceeeEEEECCCCcEEEcc
Q 013684 288 ------RDQTSFESYF-GTMPWLALPFGD--PTIK-ELTKYFD-------------VQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 288 ------~~~~~~~~~~-~~~~~~~~p~~~--d~~~-~l~~~~~-------------v~~~P~~~lid~~G~i~~~~ 340 (438)
.+.++.++++ ++++ +.||+.. |.++ .+...|+ +...|++||||++|+++.+.
T Consensus 143 ~~~~e~~s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~ 217 (236)
T PLN02399 143 FGGQEPGSNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERY 217 (236)
T ss_pred ccccCCCCHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEE
Confidence 3556788887 4555 7888864 3222 3333332 35579999999999999985
|
|
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-19 Score=151.03 Aligned_cols=105 Identities=25% Similarity=0.338 Sum_probs=96.3
Q ss_pred CCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-----CCHHHHHHHHhc
Q 013684 225 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-----RDQTSFESYFGT 299 (438)
Q Consensus 225 g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-----~~~~~~~~~~~~ 299 (438)
|+ .+++++++||+++|+||++||++|.+++|.|++++++++++ ++.+++|+.+ .+.+.+++++++
T Consensus 13 ~~-~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~---------~~~vi~i~~~~~~~~~~~~~~~~~~~~ 82 (126)
T cd03012 13 DK-PLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD---------GLVVIGVHSPEFAFERDLANVKSAVLR 82 (126)
T ss_pred CC-ccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC---------CeEEEEeccCccccccCHHHHHHHHHH
Confidence 46 89999999999999999999999999999999999999865 7999999863 457789999998
Q ss_pred CCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 300 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 300 ~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
++ +.+|+..|....+.+.|++.++|+++|||++|+++++.
T Consensus 83 ~~-~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 83 YG-ITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred cC-CCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence 88 78999999999999999999999999999999999874
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-19 Score=160.20 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=97.3
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC---
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--- 287 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d--- 287 (438)
.+..+|+|++ +.+|+ .+++++++||+|||+|||+|||+|..++|.|++++++|+++ +++||+|+++
T Consensus 15 ~~~~~pdf~l~d~~G~-~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~---------g~~vvgv~~~~~~ 84 (199)
T PTZ00056 15 LRKSIYDYTVKTLEGT-TVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL---------GLEILAFPTSQFL 84 (199)
T ss_pred cCCCCCceEEECCCCC-EEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC---------ceEEEEecchhcc
Confidence 4668899999 99999 99999999999999999999999999999999999999866 8999999974
Q ss_pred ----CCHHHHHHHHhcCCCcccccCCc------hhHH--------HHHhcCcCc----e---eeEEEECCCCcEEEccc
Q 013684 288 ----RDQTSFESYFGTMPWLALPFGDP------TIKE--------LTKYFDVQG----I---PCLVIIGPEGKTVTKQG 341 (438)
Q Consensus 288 ----~~~~~~~~~~~~~~~~~~p~~~d------~~~~--------l~~~~~v~~----~---P~~~lid~~G~i~~~~~ 341 (438)
.+.+++++|+++++ +.||+..| .... +...|++.+ + |++||||++|+++.+..
T Consensus 85 ~~e~d~~e~~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 85 NQEFPNTKDIRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS 162 (199)
T ss_pred CCCCCCHHHHHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence 35678999999887 78887543 1111 223354432 2 37999999999998753
|
|
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-19 Score=148.93 Aligned_cols=112 Identities=18% Similarity=0.284 Sum_probs=98.5
Q ss_pred CCCCCcc-CCCC--CceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHH
Q 013684 215 HDRGYLL-GHPP--DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 291 (438)
Q Consensus 215 ~~~~f~l-~~~g--~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~ 291 (438)
.+|+|++ +.+| . .+++++++||+++|+||++|||+|++++|.+.++.+++ +++||+|+.+.+.+
T Consensus 2 ~~p~f~~~~~~g~~~-~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~------------~~~vv~v~~~~~~~ 68 (127)
T cd03010 2 PAPAFSLPALPGPDK-TLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG------------RVPIYGINYKDNPE 68 (127)
T ss_pred CCCCcccccccCCCc-cccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc------------CcEEEEEECCCCHH
Confidence 5799999 8888 7 89999999999999999999999999999999886553 38899999988889
Q ss_pred HHHHHHhcCCCccc-ccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 292 SFESYFGTMPWLAL-PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 292 ~~~~~~~~~~~~~~-p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
++++++++.+ +.+ ++..|....+++.|++.++|+++++|++|+++.+.
T Consensus 69 ~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~ 117 (127)
T cd03010 69 NALAWLARHG-NPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKH 117 (127)
T ss_pred HHHHHHHhcC-CCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEE
Confidence 9999998877 344 35567778999999999999999999999999874
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.1e-19 Score=178.06 Aligned_cols=117 Identities=17% Similarity=0.281 Sum_probs=103.9
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC---
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--- 287 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d--- 287 (438)
.+..+|+|++ |.+|+ .+.++ +||+|+|+|||+||++|+.++|.|.+++++++.+ +++||+|+++
T Consensus 34 ~~~~lP~f~l~D~dG~-~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~---------~v~VI~Vs~~~~~ 101 (521)
T PRK14018 34 VPHTLSTLKTADNRPA-SVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS---------SANLITVASPGFL 101 (521)
T ss_pred ccCCCCCeEeecCCCc-eeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC---------CeEEEEEeccccc
Confidence 4567899999 99999 88887 8999999999999999999999999999998754 7999999873
Q ss_pred --CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 288 --RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 288 --~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+.++++++++.+++.++|+..|....+.+.|+|.++|+++|||++|+++.+.
T Consensus 102 ~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~ 156 (521)
T PRK14018 102 HEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIV 156 (521)
T ss_pred ccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEE
Confidence 34567888888888778899999999999999999999999999999999873
|
|
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.78 E-value=8e-19 Score=155.48 Aligned_cols=116 Identities=16% Similarity=0.227 Sum_probs=95.4
Q ss_pred cCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC----
Q 013684 214 NHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---- 288 (438)
Q Consensus 214 ~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---- 288 (438)
..+|+|++ +.+|+ .+++++++||+++|+||++|||+|..++|.|++++++|+++ ++.|++|++|.
T Consensus 7 ~~~pdf~l~d~~G~-~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~---------g~~vvgv~~~~~~~~ 76 (167)
T PLN02412 7 KSIYDFTVKDIGGN-DVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ---------GFEILAFPCNQFLGQ 76 (167)
T ss_pred CCCCceEEECCCCC-EEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC---------CcEEEEecccccccC
Confidence 46899999 99999 99999999999999999999999999999999999999976 89999999862
Q ss_pred ---CHHHHHHH-HhcCCCcccccCCc--hh-HHHHHhcC-------------cCceeeEEEECCCCcEEEcc
Q 013684 289 ---DQTSFESY-FGTMPWLALPFGDP--TI-KELTKYFD-------------VQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ---~~~~~~~~-~~~~~~~~~p~~~d--~~-~~l~~~~~-------------v~~~P~~~lid~~G~i~~~~ 340 (438)
+.+++.++ .++++ +.||+..+ .+ ......|+ +...|++||||++|+++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~ 147 (167)
T PLN02412 77 EPGSNEEIQQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY 147 (167)
T ss_pred CCCCHHHHHHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence 34455555 46666 88998652 22 23344332 66789999999999999985
|
|
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-18 Score=153.62 Aligned_cols=118 Identities=22% Similarity=0.301 Sum_probs=101.0
Q ss_pred hhcCCCCCcc-CCCC----CceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 212 LTNHDRGYLL-GHPP----DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g----~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
+|..+|+|.+ +.+| + .+++++++||+++|+|| ++||++|...++.|++++++|.+. ++.|++|+
T Consensus 1 vG~~aP~f~~~~~~g~~~~~-~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~---------~v~vv~Is 70 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFK-EISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL---------NAEVLGVS 70 (173)
T ss_pred CCCcCCCCEeecccCCCCce-EEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEe
Confidence 4788999999 7777 7 89999999999999999 899999999999999999999865 89999999
Q ss_pred cCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
+|.. +..+.+.+.. .-+.||+..|....+.+.||+. .+|+++|||++|+|++.+
T Consensus 71 ~d~~-~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 71 TDSH-FSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred cCCH-HHHHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 9854 3333444332 2367899999999999999996 688999999999999985
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-18 Score=173.53 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=59.7
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
..||.|+|+|||+||++|+.+.|.+.++++.+++. ..+.++.|+++.+ .
T Consensus 373 ~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~--------~~v~~~~id~~~~-----------------------~ 421 (477)
T PTZ00102 373 KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN--------DSIIVAKMNGTAN-----------------------E 421 (477)
T ss_pred cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC--------CcEEEEEEECCCC-----------------------c
Confidence 35799999999999999999999999999988753 2466777776644 3
Q ss_pred HHHHhcCcCceeeEEEECCCCcEE
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
..++.|+++++||++++++++++.
T Consensus 422 ~~~~~~~v~~~Pt~~~~~~~~~~~ 445 (477)
T PTZ00102 422 TPLEEFSWSAFPTILFVKAGERTP 445 (477)
T ss_pred cchhcCCCcccCeEEEEECCCcce
Confidence 457889999999999998777653
|
|
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-18 Score=154.36 Aligned_cols=130 Identities=22% Similarity=0.260 Sum_probs=104.5
Q ss_pred hhhcCCCCCcc-CCCCCceeecc--ccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVS--SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~--~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.+|..+|+|++ +.+|+ .++++ +.+||+++|+||++|||+|+.+.|.+.++++++ ++.+++|+.|
T Consensus 47 ~vG~~aP~f~l~d~~G~-~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~------------~~~vv~Is~~ 113 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGE-PVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE------------ETDVVMISDG 113 (189)
T ss_pred CCCCcCCCcEecCCCCC-EEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc------------CCcEEEEeCC
Confidence 47889999999 99999 99994 579999999999999999999999999887543 3678999854
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHH
Q 013684 288 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQM 367 (438)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i 367 (438)
+.++.++|+++++ +.++... ...++.+.|++.++|++++||++|++++++. ..+.+.++++.+++
T Consensus 114 -~~~~~~~~~~~~~-~~~~~~~-~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~------------~~~~~~le~ll~~l 178 (189)
T TIGR02661 114 -TPAEHRRFLKDHE-LGGERYV-VSAEIGMAFQVGKIPYGVLLDQDGKIRAKGL------------TNTREHLESLLEAD 178 (189)
T ss_pred -CHHHHHHHHHhcC-CCcceee-chhHHHHhccCCccceEEEECCCCeEEEccC------------CCCHHHHHHHHHHH
Confidence 6778899999887 4444322 3578899999999999999999999998631 12455666666655
Q ss_pred H
Q 013684 368 E 368 (438)
Q Consensus 368 ~ 368 (438)
+
T Consensus 179 ~ 179 (189)
T TIGR02661 179 R 179 (189)
T ss_pred H
Confidence 4
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.1e-19 Score=153.56 Aligned_cols=114 Identities=15% Similarity=0.219 Sum_probs=95.4
Q ss_pred CCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC------
Q 013684 216 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR------ 288 (438)
Q Consensus 216 ~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~------ 288 (438)
.|+|++ +.+|+ .+++++++||+|+|+|||+||| |..++|.|++++++|+++ ++.||+|++|.
T Consensus 2 ~~~f~l~d~~G~-~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~---------~~~vv~v~~~~~~~~~~ 70 (152)
T cd00340 2 IYDFSVKDIDGE-PVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR---------GLVVLGFPCNQFGGQEP 70 (152)
T ss_pred cceeEEECCCCC-EEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC---------CEEEEEeccCccccCCC
Confidence 588999 99999 9999999999999999999999 999999999999999865 79999999752
Q ss_pred -CHHHHHHHHhc-CCCcccccCCch--hHH-HHHhcC--cCcee-----------eEEEECCCCcEEEccc
Q 013684 289 -DQTSFESYFGT-MPWLALPFGDPT--IKE-LTKYFD--VQGIP-----------CLVIIGPEGKTVTKQG 341 (438)
Q Consensus 289 -~~~~~~~~~~~-~~~~~~p~~~d~--~~~-l~~~~~--v~~~P-----------~~~lid~~G~i~~~~~ 341 (438)
+.+.+++|+++ .+ ++||+..|. ... ....|+ +.++| ++||||++|+++++..
T Consensus 71 ~~~~~~~~f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~ 140 (152)
T cd00340 71 GSNEEIKEFCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFA 140 (152)
T ss_pred CCHHHHHHHHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEEC
Confidence 35779999987 56 788987642 222 455565 46677 7999999999999853
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-18 Score=148.58 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=104.2
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCC-CEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVG-KTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
+|..+|+|.+ +.+|+ .+++++++| |+++|.|| ++||++|...+|.|++++++++++ ++++|+|+.|
T Consensus 3 ~G~~~p~~~l~~~~g~-~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~v~vi~vs~d- 71 (149)
T cd03018 3 VGDKAPDFELPDQNGQ-EVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA---------GAEVLGISVD- 71 (149)
T ss_pred CCCcCCCcEecCCCCC-EEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC---------CCEEEEecCC-
Confidence 5788999999 99999 999999999 99998888 899999999999999999999865 7999999988
Q ss_pred CHHHHHHHHhcCCCcccccCCchh--HHHHHhcCcC----ce--eeEEEECCCCcEEEcc
Q 013684 289 DQTSFESYFGTMPWLALPFGDPTI--KELTKYFDVQ----GI--PCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~~~~~~~~~~~~~~~~p~~~d~~--~~l~~~~~v~----~~--P~~~lid~~G~i~~~~ 340 (438)
+.+.+++|.++++ +.+|+..|.. ..+.+.||+. ++ |+++|||++|++++..
T Consensus 72 ~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~ 130 (149)
T cd03018 72 SPFSLRAWAEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAW 130 (149)
T ss_pred CHHHHHHHHHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEE
Confidence 4567889998887 7889988876 8999999997 33 3899999999999984
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-18 Score=149.80 Aligned_cols=117 Identities=17% Similarity=0.224 Sum_probs=105.5
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecC-CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+||++ ||+.|..+++.|.+++++++++ +++||+|+.| +
T Consensus 6 ~g~~~p~f~l~~~~G~-~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~---------~v~vi~Is~d-~ 74 (154)
T PRK09437 6 AGDIAPKFSLPDQDGE-QVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA---------GVVVLGISTD-K 74 (154)
T ss_pred CCCcCCCcEeeCCCCC-EEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCC-C
Confidence 5888999999 99999 9999999999999999986 6889999999999999999876 7999999998 5
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhcCcCce------------eeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGI------------PCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~------------P~~~lid~~G~i~~~~ 340 (438)
.+++++|+++++ +.+|++.|....+.+.||+... |+++|||++|+|+...
T Consensus 75 ~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 136 (154)
T PRK09437 75 PEKLSRFAEKEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVF 136 (154)
T ss_pred HHHHHHHHHHhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEE
Confidence 688899999887 7899988888999999998654 7889999999999874
|
|
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-18 Score=152.08 Aligned_cols=117 Identities=17% Similarity=0.241 Sum_probs=97.9
Q ss_pred hhhhcCCCCCcc-CCCCC-ceeecccc-CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 210 NLLTNHDRGYLL-GHPPD-EKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 210 ~~~g~~~~~f~l-~~~g~-~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
..+|..+|+|++ +.+|+ ..++++++ +||+++|+||++||++|+.+.|.++++++ + ++++++|+.
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~---------~~~vi~V~~ 100 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----D---------GLPIVGVDY 100 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----c---------CCEEEEEEC
Confidence 357889999999 88886 13444564 68999999999999999999999877653 2 589999999
Q ss_pred CCCHHHHHHHHhcCCCcccc-cCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 287 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~p-~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+.+.++.++|+++++ +.+| +..|....+.+.|++.++|++++||++|+++++.
T Consensus 101 ~~~~~~~~~~~~~~~-~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~ 154 (173)
T TIGR00385 101 KDQSQNALKFLKELG-NPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRH 154 (173)
T ss_pred CCChHHHHHHHHHcC-CCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEE
Confidence 877788888998887 5666 4567788999999999999999999999999874
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-18 Score=151.61 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=102.9
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCC-ChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+||++| ||+|..++|.|+++++++. +++|++||.|.
T Consensus 20 ~G~~~P~f~l~~~~g~-~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-----------~~~vv~vs~D~- 86 (167)
T PRK00522 20 VGDKAPDFTLVANDLS-DVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-----------NTVVLCISADL- 86 (167)
T ss_pred CCCCCCCeEEEcCCCc-EEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-----------CcEEEEEeCCC-
Confidence 5889999999 99999 99999999999999999999 9999999999999988873 58999999984
Q ss_pred HHHHHHHHhcCCCcccccCCc-hhHHHHHhcCcCcee---------eEEEECCCCcEEEccc
Q 013684 290 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIP---------CLVIIGPEGKTVTKQG 341 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d-~~~~l~~~~~v~~~P---------~~~lid~~G~i~~~~~ 341 (438)
....++|.++++...+++..| ....+++.||+...| +++|||++|+|++.+.
T Consensus 87 ~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 87 PFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred HHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 466788998887334788888 566999999998877 9999999999999863
|
|
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.6e-18 Score=136.14 Aligned_cols=93 Identities=39% Similarity=0.755 Sum_probs=82.3
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcC--CcccccCCChHHHHHHhhhc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM--PWLAVPYSDLETKKALNRKF 148 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~--~~~~~~~~d~~~~~~l~~~~ 148 (438)
||+++|+||++||++|+.++|.|.++++++++ +.++++|+|+.|.+.+++++++++. +|..+++.+.. ...+.+.|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 78 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDN-NSELLKKY 78 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHH-HHHHHHHT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcch-HHHHHHHC
Confidence 79999999999999999999999999999995 3569999999999999999999987 89999985544 57999999
Q ss_pred CcCccceEEEecCCCCCCCc
Q 013684 149 DIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 149 ~v~~~P~~~lvd~~~~~G~v 168 (438)
++.++|+++|+|+ +|+|
T Consensus 79 ~i~~iP~~~lld~---~G~I 95 (95)
T PF13905_consen 79 GINGIPTLVLLDP---DGKI 95 (95)
T ss_dssp T-TSSSEEEEEET---TSBE
T ss_pred CCCcCCEEEEECC---CCCC
Confidence 9999999999999 9975
|
... |
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-18 Score=145.42 Aligned_cols=114 Identities=26% Similarity=0.333 Sum_probs=104.7
Q ss_pred CCCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHH
Q 013684 215 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 292 (438)
Q Consensus 215 ~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~ 292 (438)
.+|+|.+ +.+|+ .+++++++||+++|+|| +.|||+|..+++.|.++++++.++ +++||+|+.| +.+.
T Consensus 2 ~~p~f~l~~~~g~-~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~---------~~~vv~is~d-~~~~ 70 (140)
T cd03017 2 KAPDFTLPDQDGE-TVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL---------GAVVIGVSPD-SVES 70 (140)
T ss_pred CCCCccccCCCCC-EEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCC-CHHH
Confidence 5799999 99999 99999999999999999 589999999999999999999865 7999999998 5578
Q ss_pred HHHHHhcCCCcccccCCchhHHHHHhcCcCce---------eeEEEECCCCcEEEcc
Q 013684 293 FESYFGTMPWLALPFGDPTIKELTKYFDVQGI---------PCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 293 ~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~---------P~~~lid~~G~i~~~~ 340 (438)
+++|+++++ +.+|+..|....+.+.||+... |+++|||++|++++..
T Consensus 71 ~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~ 126 (140)
T cd03017 71 HAKFAEKYG-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVW 126 (140)
T ss_pred HHHHHHHhC-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEE
Confidence 899999887 6899999988999999999988 9999999999999884
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-18 Score=150.36 Aligned_cols=119 Identities=24% Similarity=0.370 Sum_probs=101.1
Q ss_pred hhccchhHHHHHhhcccccC--CCCCEEeccccCCCEEEEEEecc-CCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 39 IMSLSQWYVQQLRRRMTSTK--EIGEEVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~--~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
+|+.+|+|+ +++ .+|+.+++++++||+++|+||++ |||+|+.++|.|.++++.+++.+ +.+++|+.+
T Consensus 2 ~G~~~P~~~--------~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~ 71 (146)
T PF08534_consen 2 VGDKAPDFS--------LKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSD 71 (146)
T ss_dssp TTSB--CCE--------EEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEES
T ss_pred CCCCCCCeE--------EEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEeccc
Confidence 689999999 855 99999999999999999999999 99999999999999999998876 999999999
Q ss_pred CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC---------ccceEEEecCCCCCCCcccccc
Q 013684 116 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~---------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.+.. ..++.++.+.......|.+ ..+.+.|++. .+|+++|||+ +|+|++...
T Consensus 72 ~~~~-~~~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~~~~~~P~~~lId~---~G~V~~~~~ 132 (146)
T PF08534_consen 72 DDPP-VREFLKKYGINFPVLSDPD--GALAKALGVTIMEDPGNGFGIPTTFLIDK---DGKVVYRHV 132 (146)
T ss_dssp SSHH-HHHHHHHTTTTSEEEEETT--SHHHHHTTCEEECCTTTTSSSSEEEEEET---TSBEEEEEE
T ss_pred CCHH-HHHHHHhhCCCceEEechH--HHHHHHhCCccccccccCCeecEEEEEEC---CCEEEEEEe
Confidence 8877 8888887553322233433 7899999988 9999999999 999998865
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-18 Score=146.69 Aligned_cols=116 Identities=13% Similarity=0.134 Sum_probs=102.9
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCC-ChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+||++| |++|..++|.|.+++++++ ++.||+|++|.
T Consensus 2 ~G~~aP~f~l~~~~g~-~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-----------~~~vi~Is~d~- 68 (143)
T cd03014 2 VGDKAPDFTLVTSDLS-EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-----------NTVVLTISADL- 68 (143)
T ss_pred CCCCCCCcEEECCCCc-EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-----------CCEEEEEECCC-
Confidence 5788999999 99999 99999999999999999998 6999999999999998873 58999999985
Q ss_pred HHHHHHHHhcCCCcccccCCchh-HHHHHhcCcCc------eeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDPTI-KELTKYFDVQG------IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~-~~l~~~~~v~~------~P~~~lid~~G~i~~~~ 340 (438)
.+..++|.++++...+|+..|.. ..+.+.||+.. .|++||||++|+|+...
T Consensus 69 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 69 PFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred HHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence 56778888888755788888875 89999999963 79999999999999885
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-18 Score=140.85 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=91.4
Q ss_pred ccCCCCCEEeccccC-CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCccccc
Q 013684 56 STKEIGEEVKVSDLE-GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVP 134 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~-gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~ 134 (438)
+.+.+|+.+++++++ ||+++|+||++||++|+.++|.|.++++++++ ++.++.++ |.+.+++.++++++++..+|
T Consensus 5 l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~-~~~~~~~~~~~~~~~~~~~p 80 (114)
T cd02967 5 LTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLAS-DGEKAEHQRFLKKHGLEAFP 80 (114)
T ss_pred eecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEe-CCCHHHHHHHHHHhCCCCCc
Confidence 889999999999997 99999999999999999999999999888743 37788775 77888899999988764444
Q ss_pred CCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 135 YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 135 ~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
... + ..+.+.|++..+|++++||+ +|++++++.
T Consensus 81 ~~~-~--~~~~~~~~~~~~P~~~vid~---~G~v~~~~~ 113 (114)
T cd02967 81 YVL-S--AELGMAYQVSKLPYAVLLDE---AGVIAAKGL 113 (114)
T ss_pred EEe-c--HHHHhhcCCCCcCeEEEECC---CCeEEeccc
Confidence 322 1 56889999999999999999 999988753
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.8e-18 Score=150.44 Aligned_cols=160 Identities=14% Similarity=0.225 Sum_probs=118.8
Q ss_pred hhhcCCCCCcc-C-CCCC-ceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 211 LLTNHDRGYLL-G-HPPD-EKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 211 ~~g~~~~~f~l-~-~~g~-~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
.+|..+|+|+. . .+|. ..+++++++||+++|+|| +.|||.|..+++.|.+++++|.+. +++|++||.
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~---------g~~vigIS~ 73 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL---------GVDVYSVST 73 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC---------CCEEEEEeC
Confidence 47899999997 2 2333 177888999999999999 999999999999999999999876 899999999
Q ss_pred CCCHHHHHHHHhcC---CCcccccCCchhHHHHHhcCc----Cce--eeEEEECCCCcEEEcccchhhhhccccCCCCCH
Q 013684 287 DRDQTSFESYFGTM---PWLALPFGDPTIKELTKYFDV----QGI--PCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE 357 (438)
Q Consensus 287 d~~~~~~~~~~~~~---~~~~~p~~~d~~~~l~~~~~v----~~~--P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~ 357 (438)
|. ....++|.+.. ..+.||++.|.+..+++.||+ .++ |++||||++|+|++...... . ..
T Consensus 74 D~-~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~--~--------~~ 142 (187)
T PRK10382 74 DT-HFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAE--G--------IG 142 (187)
T ss_pred CC-HHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCC--C--------CC
Confidence 84 45566666432 347899999999999999999 356 99999999999998853221 1 11
Q ss_pred HHHHHHHHHHHHHhccCCCcccccccccccccccccCCCC
Q 013684 358 AKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGG 397 (438)
Q Consensus 358 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (438)
+.++++.+.++.+ ..+..|.+..+|..|..|..
T Consensus 143 ~~~~eil~~l~al-------q~~~~~~g~~~p~~w~~~~~ 175 (187)
T PRK10382 143 RDASDLLRKIKAA-------QYVASHPGEVCPAKWKEGEA 175 (187)
T ss_pred CCHHHHHHHHHhh-------hhHhhcCCeEeCCCCCcCCc
Confidence 2345555555321 11223335777877766544
|
|
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-17 Score=149.88 Aligned_cols=176 Identities=14% Similarity=0.145 Sum_probs=112.2
Q ss_pred CCCEEEEEEec---cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 70 EGKVTALYFSA---NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 70 ~gk~vll~F~a---~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
++...++.|++ +||++|+.+.|.+.++.+++. .+++..+++|.+.. .++++
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~----~~~i~~v~vd~~~~----------------------~~l~~ 71 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP----KLKLEIYDFDTPED----------------------KEEAE 71 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC----CceEEEEecCCccc----------------------HHHHH
Confidence 44455656776 999999999999999999872 26666777764433 78999
Q ss_pred hcCcCccceEEEecCCCCCCCccc-ccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCCCccCCCC
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDATL-HDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPP 225 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~~-~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~f~l~~~g 225 (438)
.|+|.++||+++++ +|+.+. +.. | .+...+....+....... + +.-.++...
T Consensus 72 ~~~V~~~Pt~~~f~----~g~~~~~~~~-------G---~~~~~~l~~~i~~~~~~~----------~---~~~~L~~~~ 124 (215)
T TIGR02187 72 KYGVERVPTTIILE----EGKDGGIRYT-------G---IPAGYEFAALIEDIVRVS----------Q---GEPGLSEKT 124 (215)
T ss_pred HcCCCccCEEEEEe----CCeeeEEEEe-------e---cCCHHHHHHHHHHHHHhc----------C---CCCCCCHHH
Confidence 99999999999998 665542 221 1 111111111121111100 0 000111111
Q ss_pred CceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccc
Q 013684 226 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLAL 305 (438)
Q Consensus 226 ~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 305 (438)
. -.+.+..+.++++.||++||++|+.+.+.+.++..+. +++.+..|+.+..
T Consensus 125 ~--~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-----------~~i~~~~vD~~~~---------------- 175 (215)
T TIGR02187 125 V--ELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-----------DKILGEMIEANEN---------------- 175 (215)
T ss_pred H--HHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-----------CceEEEEEeCCCC----------------
Confidence 1 1123344556777799999999999998887776553 2466666666644
Q ss_pred ccCCchhHHHHHhcCcCceeeEEEECCCCc
Q 013684 306 PFGDPTIKELTKYFDVQGIPCLVIIGPEGK 335 (438)
Q Consensus 306 p~~~d~~~~l~~~~~v~~~P~~~lid~~G~ 335 (438)
.++.+.|+|.++||+++. .+|+
T Consensus 176 -------~~~~~~~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 176 -------PDLAEKYGVMSVPKIVIN-KGVE 197 (215)
T ss_pred -------HHHHHHhCCccCCEEEEe-cCCE
Confidence 678899999999999887 5665
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=149.80 Aligned_cols=160 Identities=19% Similarity=0.253 Sum_probs=117.4
Q ss_pred hhhcCCCCCcc-C-CCCC-ceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 211 LLTNHDRGYLL-G-HPPD-EKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 211 ~~g~~~~~f~l-~-~~g~-~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
.+|..+|+|++ + .+|+ ..+++++++||+++|+|| ++||++|..+++.|++++++|+++ +++|++||+
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~---------gv~vi~VS~ 73 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL---------GVEVYSVST 73 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc---------CCcEEEEeC
Confidence 57899999999 7 5665 147778999999999999 999999999999999999999865 799999999
Q ss_pred CCCHHHHHHHHhc---CCCcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcccchhhhhccccCCCCCH
Q 013684 287 DRDQTSFESYFGT---MPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE 357 (438)
Q Consensus 287 d~~~~~~~~~~~~---~~~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~ 357 (438)
|.. ...++|.+. ..-+.||+..|....+++.||+. ..|++||||++|+|++...... . ..
T Consensus 74 D~~-~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~-------~---~~ 142 (187)
T TIGR03137 74 DTH-FVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDN-------G---IG 142 (187)
T ss_pred CCH-HHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCC-------C---CC
Confidence 853 444444432 22367889999899999999996 4699999999999998752111 1 11
Q ss_pred HHHHHHHHHHHHHhccCCCcccccccccccccccccCCCC
Q 013684 358 AKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGG 397 (438)
Q Consensus 358 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (438)
+..+++.+.|+.+ .+...+++..+|..|..|..
T Consensus 143 ~~~~~ll~~l~~~-------~~~~~~~~~~~~~~~~~~~~ 175 (187)
T TIGR03137 143 RDASELLRKIKAA-------QYVAAHPGEVCPAKWKEGAE 175 (187)
T ss_pred CCHHHHHHHHHHh-------hhHHhcCCeeeCCCCCcCCc
Confidence 2456666655421 12222334666766666554
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=148.66 Aligned_cols=117 Identities=19% Similarity=0.260 Sum_probs=93.7
Q ss_pred hcCCCCCcc-CCCCCceeeccccCCCEE-EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--
Q 013684 213 TNHDRGYLL-GHPPDEKVPVSSLVGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 288 (438)
Q Consensus 213 g~~~~~f~l-~~~g~~~~~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-- 288 (438)
+...|+|++ +.+|+ .+++++++||++ ++.|||+|||+|..++|.|++++++|+++ ++.||+|++|.
T Consensus 17 ~~~~p~f~l~d~~G~-~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~---------gv~vv~vs~~~~~ 86 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQ-LVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ---------GLEILAFPCNQFM 86 (183)
T ss_pred CCcccceEeEcCCCC-EEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC---------CcEEEEEeccccc
Confidence 456899999 99999 999999999964 56679999999999999999999999876 79999999752
Q ss_pred -----CHHHHHHHHh-cCCCcccccCCc--hh----HHHHH------------hcCcCceee---EEEECCCCcEEEcc
Q 013684 289 -----DQTSFESYFG-TMPWLALPFGDP--TI----KELTK------------YFDVQGIPC---LVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 -----~~~~~~~~~~-~~~~~~~p~~~d--~~----~~l~~------------~~~v~~~P~---~~lid~~G~i~~~~ 340 (438)
+.++.++|+. +++ ++||+..| .+ ..+.. .+++.++|+ +||||++|+|+.+.
T Consensus 87 ~~~~~~~~~~~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~ 164 (183)
T PTZ00256 87 EQEPWDEPEIKEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF 164 (183)
T ss_pred ccCCCCHHHHHHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence 3467888875 555 78888744 12 22321 246779995 69999999999985
|
|
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=145.39 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=91.9
Q ss_pred CCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-------C
Q 013684 217 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-------R 288 (438)
Q Consensus 217 ~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-------~ 288 (438)
-+|++ +.+|+ .+++++++||+++|+|||+|||+|+..+|.|.+++++|+++ ++.|++|+++ .
T Consensus 3 ~~f~l~~~~G~-~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~---------~~~v~~i~~~~~~~~~~d 72 (153)
T TIGR02540 3 YSFEVKDARGR-TVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPS---------HFNVLAFPCNQFGESEPD 72 (153)
T ss_pred ccceeECCCCC-EecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC---------CeEEEEEeccccccCCCC
Confidence 46888 99999 99999999999999999999999999999999999999876 8999999962 3
Q ss_pred CHHHHHHHHhc-CCCcccccCCc-----hhHHHHHhcCc---Cceee----EEEECCCCcEEEcc
Q 013684 289 DQTSFESYFGT-MPWLALPFGDP-----TIKELTKYFDV---QGIPC----LVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~~~~~~~~~~-~~~~~~p~~~d-----~~~~l~~~~~v---~~~P~----~~lid~~G~i~~~~ 340 (438)
+.+.+++|+++ ++ +.||+..| ......-.|.+ .++|+ +||||++|+++.+.
T Consensus 73 ~~~~~~~f~~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~ 136 (153)
T TIGR02540 73 SSKEIESFARRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFW 136 (153)
T ss_pred CHHHHHHHHHHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEE
Confidence 46778999975 56 78888654 11122222332 36898 99999999999885
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-17 Score=140.19 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=108.6
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
.+|..+|||+| +.+|+ .++|++++||+|+|+|| ..++|.|..++-.+++.+.+|... +.+|++||.|
T Consensus 5 ~~G~~aPdF~Lp~~~g~-~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~---------~a~V~GIS~D- 73 (157)
T COG1225 5 KVGDKAPDFELPDQDGE-TVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL---------GAVVLGISPD- 73 (157)
T ss_pred CCCCcCCCeEeecCCCC-EEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC---------CCEEEEEeCC-
Confidence 36899999999 99999 99999999999999999 579999999999999999999976 8999999999
Q ss_pred CHHHHHHHHhcCCCcccccCCchhHHHHHhcCcC------------ceeeEEEECCCCcEEEcc
Q 013684 289 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~~ 340 (438)
+....++|.++++ ++||.+.|...+++++|||- ..+++||||++|+|++..
T Consensus 74 s~~~~~~F~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 74 SPKSHKKFAEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CHHHHHHHHHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 6688999999998 88999999999999999983 457999999999999875
|
|
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-18 Score=142.19 Aligned_cols=117 Identities=23% Similarity=0.431 Sum_probs=100.1
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEecc-CCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
+|+++|+|+ +++.+|+.+++++++||+++|.||++ ||++|+..++.|+++++++++.+ +.+++|+.|.
T Consensus 1 vG~~~P~f~--------l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~- 69 (124)
T PF00578_consen 1 VGDKAPDFT--------LTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDD- 69 (124)
T ss_dssp TTSBGGCEE--------EETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSS-
T ss_pred CcCCCCCcE--------eECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeeccccc-
Confidence 689999999 99999999999999999999999999 99999999999999999999876 9999999974
Q ss_pred HHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccc
Q 013684 118 LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~ 171 (438)
.++.+++.+..++....+.|.+ ..+.+.|++. .+|+++|||+ +|+|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~~~p~~~lid~---~g~I~~~ 124 (124)
T PF00578_consen 70 PEEIKQFLEEYGLPFPVLSDPD--GELAKAFGIEDEKDTLALPAVFLIDP---DGKIRYA 124 (124)
T ss_dssp HHHHHHHHHHHTCSSEEEEETT--SHHHHHTTCEETTTSEESEEEEEEET---TSBEEEE
T ss_pred ccchhhhhhhhccccccccCcc--hHHHHHcCCccccCCceEeEEEEECC---CCEEEeC
Confidence 4577778775543222222433 7899999998 9999999999 9998753
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-17 Score=134.61 Aligned_cols=111 Identities=29% Similarity=0.513 Sum_probs=102.0
Q ss_pred CCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC-HHHHHH
Q 013684 218 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD-QTSFES 295 (438)
Q Consensus 218 ~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~-~~~~~~ 295 (438)
+|.+ +.+|+ .+++++++||+++|+||++||++|+..++.+.++.+++.+. ++.+++|++|.+ .+.+++
T Consensus 1 ~~~~~~~~g~-~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~~~v~~d~~~~~~~~~ 70 (116)
T cd02966 1 DFSLPDLDGK-PVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD---------GVEVVGVNVDDDDPAAVKA 70 (116)
T ss_pred CccccCCCCC-EeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC---------CeEEEEEECCCCCHHHHHH
Confidence 4677 89999 99999999999999999999999999999999999998743 799999999987 899999
Q ss_pred HHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 296 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 296 ~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++++++ ..+++..|....+.+.|++.++|+++|+|++|+++++
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 71 FLKKYG-ITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred HHHHcC-CCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence 999988 7888888888899999999999999999999999976
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-17 Score=150.34 Aligned_cols=118 Identities=16% Similarity=0.133 Sum_probs=95.2
Q ss_pred HHhhccchhHHHHHhhcccccCCCC--CEEecccc-CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIG--EEVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g--~~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
..+|.++|+|+ +.+.+| +.++++++ +||+++|+||++||++|++++|.|.++++ .+ ++|++|+
T Consensus 39 ~~~g~~~p~f~--------l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~--~~vi~v~ 104 (185)
T PRK15412 39 ALIGKPVPKFR--------LESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QG--IRVVGMN 104 (185)
T ss_pred hhcCCCCCCcC--------CccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cC--CEEEEEE
Confidence 34577788888 888884 66777765 79999999999999999999999988753 33 8999999
Q ss_pred cCCCHHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 114 SDEDLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.|++.++..+|+++++....+ ..|.. ..+...|++.++|++++||+ +|+++++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~gv~~~P~t~vid~---~G~i~~~~~ 160 (185)
T PRK15412 105 YKDDRQKAISWLKELGNPYALSLFDGD--GMLGLDLGVYGAPETFLIDG---NGIIRYRHA 160 (185)
T ss_pred CCCCHHHHHHHHHHcCCCCceEEEcCC--ccHHHhcCCCcCCeEEEECC---CceEEEEEe
Confidence 988888899999876543221 22433 67788999999999999999 999987765
|
|
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-17 Score=149.08 Aligned_cols=118 Identities=18% Similarity=0.179 Sum_probs=98.5
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEE-EEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGL-YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +..| .+++++++||+++| +||++|||+|..+++.|.+++++|+++ +++|++||+|..
T Consensus 4 vG~~aP~F~~~~~~g--~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~---------~~~vi~vS~D~~ 72 (202)
T PRK13190 4 LGQKAPDFTVNTTKG--PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL---------GVELVGLSVDSI 72 (202)
T ss_pred CCCCCCCcEEecCCC--cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEeCCCH
Confidence 6889999999 6665 58999999997766 688999999999999999999999876 899999999954
Q ss_pred HH--HHH-HHHhcCC-CcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 290 QT--SFE-SYFGTMP-WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~--~~~-~~~~~~~-~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
.. +|. .+.++.+ .+.||+..|.+..+++.||+. .+|++||||++|+|++..
T Consensus 73 ~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~ 133 (202)
T PRK13190 73 YSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMI 133 (202)
T ss_pred HHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEE
Confidence 32 333 2333444 368999999999999999994 689999999999999864
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.7e-17 Score=146.27 Aligned_cols=159 Identities=14% Similarity=0.196 Sum_probs=114.7
Q ss_pred hhhcCCCCCcc-CC--CCCce---eecccc-CCCEEEEEEecC-CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEE
Q 013684 211 LLTNHDRGYLL-GH--PPDEK---VPVSSL-VGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 282 (438)
Q Consensus 211 ~~g~~~~~f~l-~~--~g~~~---~~l~~~-~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv 282 (438)
++|..+|+|++ +. +|+ . ++++++ +||+++|+||+. ||++|..+++.|.+++++|+++ +++|+
T Consensus 3 ~vg~~aPdF~~~~~~~~g~-~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~---------g~~vi 72 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGE-IVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR---------GVEVV 72 (200)
T ss_pred cCCCcCCCCEeecccCCCc-eeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEE
Confidence 47899999999 64 344 3 344554 799999999985 9999999999999999999876 89999
Q ss_pred EEecCCCH--HHHHH-HHhcCC--CcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcccchhhhhcccc
Q 013684 283 FVSTDRDQ--TSFES-YFGTMP--WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQEN 351 (438)
Q Consensus 283 ~is~d~~~--~~~~~-~~~~~~--~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~ 351 (438)
+||+|... ..|.+ +.+..+ -+.||+..|....+++.||+. ++|++||||++|+|++... |..
T Consensus 73 gvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~-------~~~ 145 (200)
T PRK15000 73 GVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVV-------NDL 145 (200)
T ss_pred EEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEe-------cCC
Confidence 99999542 23333 223333 268999999999999999997 7999999999999998742 211
Q ss_pred CCCCCHHHHHHHHHHHHHHhccCCCcccccccccccccccccCCCC
Q 013684 352 AYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGG 397 (438)
Q Consensus 352 ~~~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (438)
. ..+.++++.+.++.+. .+..| +..+|..|..|..
T Consensus 146 ~---~gr~~~eilr~l~al~-------~~~~~-~~~~p~~w~~g~~ 180 (200)
T PRK15000 146 P---LGRNIDEMLRMVDALQ-------FHEEH-GDVCPAQWEKGKE 180 (200)
T ss_pred C---CCCCHHHHHHHHHHhh-------hHHhc-CCCcCCCCCCCCc
Confidence 1 1123555555554311 12222 4677877776654
|
|
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-17 Score=139.77 Aligned_cols=114 Identities=14% Similarity=0.155 Sum_probs=95.9
Q ss_pred cchhHHHHHhhcccccCCCC--CEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHH
Q 013684 42 LSQWYVQQLRRRMTSTKEIG--EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN 119 (438)
Q Consensus 42 ~~p~f~~~~~~~~~~~~~~g--~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~ 119 (438)
++|+|+ +.+.+| +.+++++++||+++|+||++||++|+.++|.|+++.+++ ++++++|+.+.+.+
T Consensus 2 ~~p~f~--------~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~~~~~ 68 (127)
T cd03010 2 PAPAFS--------LPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYKDNPE 68 (127)
T ss_pred CCCCcc--------cccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECCCCHH
Confidence 468888 889998 889999999999999999999999999999999987764 39999999998999
Q ss_pred HHHHhHhcCCcccccC-CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 120 AFNNYRACMPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 120 ~~~~~~~~~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.++++++.......+. .|.. ..+++.|++.++|++++||+ +|+++.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~D~~--~~~~~~~~v~~~P~~~~ld~---~G~v~~~~~ 118 (127)
T cd03010 69 NALAWLARHGNPYAAVGFDPD--GRVGIDLGVYGVPETFLIDG---DGIIRYKHV 118 (127)
T ss_pred HHHHHHHhcCCCCceEEECCc--chHHHhcCCCCCCeEEEECC---CceEEEEEe
Confidence 9999998765432221 1333 68999999999999999999 999886643
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-17 Score=138.50 Aligned_cols=106 Identities=20% Similarity=0.218 Sum_probs=90.3
Q ss_pred CCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec-----CCCHHHHHHhHhcCCcccccC
Q 013684 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS-----DEDLNAFNNYRACMPWLAVPY 135 (438)
Q Consensus 61 g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~-----D~~~~~~~~~~~~~~~~~~~~ 135 (438)
|+.+++++++||+++|+||++||++|+.++|.|+++++++++.+ +.+++|+. +.+.++++++++++++....+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 56799999999999999999999999999999999999998865 99999976 356788899998776543223
Q ss_pred CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 136 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 136 ~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.|.+ ..+.+.|++.++|+++|||+ +|++++...
T Consensus 91 ~D~~--~~~~~~~~v~~~P~~~vid~---~G~v~~~~~ 123 (126)
T cd03012 91 NDND--YATWRAYGNQYWPALYLIDP---TGNVRHVHF 123 (126)
T ss_pred ECCc--hHHHHHhCCCcCCeEEEECC---CCcEEEEEe
Confidence 3443 78899999999999999999 999987754
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.4e-17 Score=150.64 Aligned_cols=161 Identities=14% Similarity=0.104 Sum_probs=118.1
Q ss_pred hhhhcCCCCCcc-C-CCCC-ceeecccc-CCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 013684 210 NLLTNHDRGYLL-G-HPPD-EKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284 (438)
Q Consensus 210 ~~~g~~~~~f~l-~-~~g~-~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~i 284 (438)
.++|..+|+|++ + .+|+ +.++++++ +||+++|+|| +.|||+|..+++.|.+++++|+++ +++|++|
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~---------gv~VigI 138 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER---------GVKVLGV 138 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEE
Confidence 368999999998 5 4553 16899998 8888888888 899999999999999999999876 8999999
Q ss_pred ecCCCHHHHHHHHh----cC--CCcccccCCchhHHHHHhcCcC-----ceeeEEEECCCCcEEEcccchhhhhccccCC
Q 013684 285 STDRDQTSFESYFG----TM--PWLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQGRNLINLYQENAY 353 (438)
Q Consensus 285 s~d~~~~~~~~~~~----~~--~~~~~p~~~d~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~ 353 (438)
|+|. ....+++.+ +. ..+.||++.|.+..+++.||+. ..|++||||++|+|++....+. .
T Consensus 139 S~Ds-~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~--~------ 209 (261)
T PTZ00137 139 SVDS-PFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDL--G------ 209 (261)
T ss_pred ECCC-HHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCC--C------
Confidence 9986 333333332 21 2378999999999999999995 5899999999999998753221 1
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCcccccccccccccccccCCCCC
Q 013684 354 PFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGP 398 (438)
Q Consensus 354 ~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (438)
..+.++++...|+.+- . ..+.++.+|..|..|..+
T Consensus 210 --~gr~v~eiLr~l~alq-------~-~~~~g~~cPanW~~g~~~ 244 (261)
T PTZ00137 210 --LGRSVDETLRLFDAVQ-------F-AEKTGNVCPVNWKQGDQA 244 (261)
T ss_pred --CCCCHHHHHHHHHHhc-------h-hhhcCCCcCCCCCcCCce
Confidence 1123555555554211 1 112257778777766553
|
|
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-17 Score=145.60 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=90.4
Q ss_pred chhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-------
Q 013684 43 SQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD------- 115 (438)
Q Consensus 43 ~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D------- 115 (438)
+|+|+ +.+.+|+.+++++++||+|+|+|||+||| |+.++|.|+++++++++.| +++++|+.|
T Consensus 2 ~~~f~--------l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~ 70 (152)
T cd00340 2 IYDFS--------VKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCNQFGGQEP 70 (152)
T ss_pred cceeE--------EECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccCccccCCC
Confidence 57777 89999999999999999999999999999 9999999999999998776 999999875
Q ss_pred CCHHHHHHhHhc-CCcccccCCChHHHHH-HhhhcC--cCccc-----------eEEEecCCCCCCCcccccc
Q 013684 116 EDLNAFNNYRAC-MPWLAVPYSDLETKKA-LNRKFD--IEGIP-----------CLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~d~~~~~~-l~~~~~--v~~~P-----------~~~lvd~~~~~G~v~~~~~ 173 (438)
++.+.+++|+++ .+.....+.+.+.... ....|+ +..+| +++|||+ +|+++.+..
T Consensus 71 ~~~~~~~~f~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~---~G~i~~~~~ 140 (152)
T cd00340 71 GSNEEIKEFCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDR---DGEVVKRFA 140 (152)
T ss_pred CCHHHHHHHHHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECC---CCcEEEEEC
Confidence 346778899875 5533222222111111 334444 35566 8999999 999998765
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=142.62 Aligned_cols=119 Identities=18% Similarity=0.302 Sum_probs=103.7
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCH
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 118 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~ 118 (438)
+|..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.+.+.|.++++++++.+ +.+++|+.|.+.
T Consensus 37 ~g~~~p~~~--------~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~ 106 (173)
T PRK03147 37 VGKEAPNFV--------LTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETE 106 (173)
T ss_pred CCCCCCCcE--------eecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCH
Confidence 577888898 8999999999999999999999999999999999999999999998865 999999999999
Q ss_pred HHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 119 NAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.+.++.++++.....+.+.. ..+.+.|++..+|++++||+ +|+++...
T Consensus 107 ~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~g~i~~~~ 155 (173)
T PRK03147 107 LAVKNFVNRYGLTFPVAIDKG--RQVIDAYGVGPLPTTFLIDK---DGKVVKVI 155 (173)
T ss_pred HHHHHHHHHhCCCceEEECCc--chHHHHcCCCCcCeEEEECC---CCcEEEEE
Confidence 999999987764322222333 78899999999999999999 99988653
|
|
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=143.89 Aligned_cols=123 Identities=11% Similarity=0.029 Sum_probs=94.8
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC--
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-- 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-- 115 (438)
..|..+|+|+ +.+.+|+.+++++++||+|+|+|||+|||+|+.++|.|++++++++++| ++||+|+.|
T Consensus 14 ~~~~~~pdf~--------l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~ 83 (199)
T PTZ00056 14 ELRKSIYDYT--------VKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQF 83 (199)
T ss_pred hcCCCCCceE--------EECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhc
Confidence 4577899999 8999999999999999999999999999999999999999999999876 999999974
Q ss_pred -----CCHHHHHHhHhcCCcccccCCC----h-H-------HHHHHhhhcCcC----cc---ceEEEecCCCCCCCcccc
Q 013684 116 -----EDLNAFNNYRACMPWLAVPYSD----L-E-------TKKALNRKFDIE----GI---PCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 116 -----~~~~~~~~~~~~~~~~~~~~~d----~-~-------~~~~l~~~~~v~----~~---P~~~lvd~~~~~G~v~~~ 171 (438)
++.+++++++++.+.....+.+ . . ....+...|++. .+ |+++|||+ +|+++.+
T Consensus 84 ~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~---~G~iv~~ 160 (199)
T PTZ00056 84 LNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNK---SGNVVAY 160 (199)
T ss_pred cCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECC---CCcEEEE
Confidence 4677899999876543222211 0 0 001222334432 22 37999999 9999976
Q ss_pred cc
Q 013684 172 DG 173 (438)
Q Consensus 172 ~~ 173 (438)
..
T Consensus 161 ~~ 162 (199)
T PTZ00056 161 FS 162 (199)
T ss_pred eC
Confidence 54
|
|
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=137.11 Aligned_cols=114 Identities=22% Similarity=0.263 Sum_probs=102.7
Q ss_pred CCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHH
Q 013684 216 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 293 (438)
Q Consensus 216 ~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~ 293 (438)
+|+|++ +.+|+ .+++++++||+++|+|| +.||++|...+|.|++++++++.. ++.+++|+.| +.+..
T Consensus 2 ~p~f~l~~~~g~-~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~~~~i~is~d-~~~~~ 70 (140)
T cd02971 2 APDFTLPATDGG-EVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG---------GAEVLGVSVD-SPFSH 70 (140)
T ss_pred CCCceeccCCCc-EEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEeCC-CHHHH
Confidence 689999 99999 99999999999999999 789999999999999999999754 7999999997 56778
Q ss_pred HHHHhcCCCcccccCCchhHHHHHhcCcCcee---------eEEEECCCCcEEEcc
Q 013684 294 ESYFGTMPWLALPFGDPTIKELTKYFDVQGIP---------CLVIIGPEGKTVTKQ 340 (438)
Q Consensus 294 ~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P---------~~~lid~~G~i~~~~ 340 (438)
++|.++++-..++++.|....+.+.||+...| +++|||++|+|++++
T Consensus 71 ~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~ 126 (140)
T cd02971 71 KAWAEKEGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE 126 (140)
T ss_pred HHHHhcccCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence 89999884478899999889999999988665 899999999999985
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=146.16 Aligned_cols=120 Identities=12% Similarity=0.114 Sum_probs=103.4
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEE-EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
.+|..+|+|.+ +.+|+ .+.+++++||++ |++||+.|||+|..+++.|.+++++|+++ +++||+||+|.
T Consensus 3 ~~Gd~aPdF~l~t~~G~-~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~---------gv~vigIS~D~ 72 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGV-KRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL---------NTELIGLSVDQ 72 (215)
T ss_pred CCCCCCCCCEeECCCCc-EecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEeCCC
Confidence 57899999999 89998 888899999975 67888999999999999999999999876 89999999996
Q ss_pred C--HHHHHHHHhcC--CCcccccCCchhHHHHHhcCcC-------ceeeEEEECCCCcEEEcc
Q 013684 289 D--QTSFESYFGTM--PWLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~--~~~~~~~~~~~--~~~~~p~~~d~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~ 340 (438)
. ...|.++++++ .-+.||+..|.+.++++.||+. ..|++||||++|+|+...
T Consensus 73 ~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~ 135 (215)
T PRK13599 73 VFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIM 135 (215)
T ss_pred HHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEE
Confidence 4 34566666643 1378999999999999999983 689999999999999874
|
|
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=134.25 Aligned_cols=106 Identities=23% Similarity=0.380 Sum_probs=95.1
Q ss_pred CCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-CHHHHH
Q 013684 217 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-DQTSFE 294 (438)
Q Consensus 217 ~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-~~~~~~ 294 (438)
|+|.+ +.+|+ .++++..+||+++|+||++||++|+.++|.|.+++++ +++++|++|. +.++++
T Consensus 1 p~f~l~~~~g~-~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~--------------~~~i~i~~~~~~~~~~~ 65 (123)
T cd03011 1 PLFTATTLDGE-QFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD--------------YPVVSVALRSGDDGAVA 65 (123)
T ss_pred CCceeecCCCC-EeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh--------------CCEEEEEccCCCHHHHH
Confidence 68899 99999 9999999999999999999999999999999988765 3578888875 478899
Q ss_pred HHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 295 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 295 ~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++.++++ +.+|+..|.+.++++.|++.++|+++|+|++| ++++
T Consensus 66 ~~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~ 108 (123)
T cd03011 66 RFMQKKG-YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFV 108 (123)
T ss_pred HHHHHcC-CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEE
Confidence 9999888 78998888888999999999999999999999 7765
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=144.90 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=96.6
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEecc--ccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVS--DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~--~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
..+|+.+|+|+ +++.+|+.++++ +.+||+++|+||++|||+|+.++|.+.+++++. ++.+++|+.
T Consensus 46 ~~vG~~aP~f~--------l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-----~~~vv~Is~ 112 (189)
T TIGR02661 46 PDVGDAAPIFN--------LPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-----ETDVVMISD 112 (189)
T ss_pred CCCCCcCCCcE--------ecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-----CCcEEEEeC
Confidence 35789999999 999999999994 579999999999999999999999999987653 266888884
Q ss_pred CCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 115 DEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 115 D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
++.++..+|.++++....++. . ..++.+.|++..+|++++||+ +|++++++
T Consensus 113 -~~~~~~~~~~~~~~~~~~~~~-~--~~~i~~~y~v~~~P~~~lID~---~G~I~~~g 163 (189)
T TIGR02661 113 -GTPAEHRRFLKDHELGGERYV-V--SAEIGMAFQVGKIPYGVLLDQ---DGKIRAKG 163 (189)
T ss_pred -CCHHHHHHHHHhcCCCcceee-c--hhHHHHhccCCccceEEEECC---CCeEEEcc
Confidence 567888999998875433332 2 268889999999999999999 99998753
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=137.13 Aligned_cols=113 Identities=18% Similarity=0.352 Sum_probs=97.0
Q ss_pred CCCCcc-CCCCCceeeccccC-CCE-EEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHH
Q 013684 216 DRGYLL-GHPPDEKVPVSSLV-GKT-VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 292 (438)
Q Consensus 216 ~~~f~l-~~~g~~~~~l~~~~-gk~-vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~ 292 (438)
+|+|++ +.+|+ .++++++. +++ ++++||++|||+|+.++|.|.++++++++. ++++|+|+.|.. +.
T Consensus 2 ~p~f~l~~~~g~-~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~---------~v~vv~V~~~~~-~~ 70 (149)
T cd02970 2 APDFELPDAGGE-TVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL---------GVELVAVGPESP-EK 70 (149)
T ss_pred CCCccccCCCCC-EEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc---------CeEEEEEeCCCH-HH
Confidence 689999 99999 99999875 454 555556999999999999999999999865 799999999854 45
Q ss_pred HHHHHhcCCCcccccCCchhHHHHHhcCcC-----------------------------ceeeEEEECCCCcEEEcc
Q 013684 293 FESYFGTMPWLALPFGDPTIKELTKYFDVQ-----------------------------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 293 ~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~-----------------------------~~P~~~lid~~G~i~~~~ 340 (438)
..++.++.+ +++|+..|.+..+.+.||+. .+|++||||++|+|++.+
T Consensus 71 ~~~~~~~~~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 71 LEAFDKGKF-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH 146 (149)
T ss_pred HHHHHHhcC-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence 557777766 78999999999999999994 799999999999999874
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.1e-16 Score=154.78 Aligned_cols=183 Identities=23% Similarity=0.365 Sum_probs=120.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|.||++||++|+...|.+.++...+++. +.+ ..+|.+.. ..+++.|+
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~---~~~--~~vd~~~~----------------------~~~~~~y~ 98 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK---VKI--GAVDCDEH----------------------KDLCEKYG 98 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc---eEE--EEeCchhh----------------------HHHHHhcC
Confidence 4679999999999999999999999999998652 333 34454433 89999999
Q ss_pred cCccceEEEecCCCCCCCcccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCC--CccCCCCCc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRG--YLLGHPPDE 227 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~--f~l~~~g~~ 227 (438)
|.++||+.++.+ ...++.... +...+.+....... +...+....+. +.++..+-
T Consensus 99 i~gfPtl~~f~~---~~~~~~~~~------------~~~~~~~~~~~~~~--------~~~~~~~~~~~~v~~l~~~~~- 154 (383)
T KOG0191|consen 99 IQGFPTLKVFRP---GKKPIDYSG------------PRNAESLAEFLIKE--------LEPSVKKLVEGEVFELTKDNF- 154 (383)
T ss_pred CccCcEEEEEcC---CCceeeccC------------cccHHHHHHHHHHh--------hccccccccCCceEEccccch-
Confidence 999999999997 422222111 11111221111111 11111111111 11111111
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
. ..-......+++.||++||++|+.+.|.+.++...++.. ..+.+..++++.
T Consensus 155 ~-~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~--------~~v~~~~~d~~~------------------- 206 (383)
T KOG0191|consen 155 D-ETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSK--------ENVELGKIDATV------------------- 206 (383)
T ss_pred h-hhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccC--------cceEEEeeccch-------------------
Confidence 0 001122457999999999999999999999999988742 367777777662
Q ss_pred CCchhHHHHHhcCcCceeeEEEECCCCc
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGPEGK 335 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~~G~ 335 (438)
...++..++|.++|++.++-++.+
T Consensus 207 ----~~~~~~~~~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 207 ----HKSLASRLEVRGYPTLKLFPPGEE 230 (383)
T ss_pred ----HHHHhhhhcccCCceEEEecCCCc
Confidence 267889999999999999966556
|
|
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-16 Score=142.88 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=99.2
Q ss_pred hhhcCCCCCcc-----CCCCCceeeccccCCCEEEEEEec-CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 013684 211 LLTNHDRGYLL-----GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284 (438)
Q Consensus 211 ~~g~~~~~f~l-----~~~g~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~i 284 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+||+ .||++|..+++.|.+++++|+++ +++||+|
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~-~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~---------g~~vv~I 76 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFK-KISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL---------NCEVLAC 76 (199)
T ss_pred ccCCcCCCCEeeccccCCCCc-EEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc---------CCEEEEE
Confidence 46899999995 35668 899999999999999995 78999999999999999999876 8999999
Q ss_pred ecCCCHHHHHHHHh---c---CCCcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 285 STDRDQTSFESYFG---T---MPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 285 s~d~~~~~~~~~~~---~---~~~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
|+|.... ...+.. . .+-++||+..|..+++++.||+. .+|+.||||++|+++...
T Consensus 77 S~d~~~~-~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~ 143 (199)
T PTZ00253 77 SMDSEYA-HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQIT 143 (199)
T ss_pred eCCCHHH-HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEE
Confidence 9986543 222221 1 22378999999999999999985 479999999999999864
|
|
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=136.53 Aligned_cols=116 Identities=25% Similarity=0.374 Sum_probs=99.2
Q ss_pred CCCCcc-CCCCCceeeccccCCCEEEEEEecCCChh-hhhhhHHHHHHHHHHHhhhhhcCCCC-CCEEEEEEecCC---C
Q 013684 216 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDAL-EDFEVVFVSTDR---D 289 (438)
Q Consensus 216 ~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~~~-~~~~vv~is~d~---~ 289 (438)
+|+|++ +.+|+ .+++++++||+++|+||++||++ |...++.|++++++++++ + .++++++|+.|. +
T Consensus 2 ~p~f~l~~~~g~-~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~-------~~~~v~~v~vs~d~~~d~ 73 (142)
T cd02968 2 GPDFTLTDQDGR-PVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGAD-------GGDDVQVVFISVDPERDT 73 (142)
T ss_pred CCceEEEcCCCC-EEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHh-------hcCceEEEEEEECCCCCC
Confidence 689999 99999 99999999999999999999997 999999999999999865 2 359999999974 3
Q ss_pred HHHHHHHHhcCCCcccccCCch---hHHHHHhcCcCce--------------eeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDPT---IKELTKYFDVQGI--------------PCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~---~~~l~~~~~v~~~--------------P~~~lid~~G~i~~~~ 340 (438)
.+.+++++++++ ..++++.+. ...+++.||+... |+++|||++|+|+.+.
T Consensus 74 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 74 PEVLKAYAKAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred HHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 577899999886 567766653 4789999997654 4689999999999863
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.7e-17 Score=149.44 Aligned_cols=125 Identities=12% Similarity=0.098 Sum_probs=96.0
Q ss_pred HHHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 36 RFLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
....|..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|++++++++++| ++||+|+.|
T Consensus 72 ~~~~g~~aPdF~--------l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d 141 (236)
T PLN02399 72 RAATEKSVHDFT--------VKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCN 141 (236)
T ss_pred chhcCCCCCceE--------EECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecc
Confidence 445889999999 9999999999999999999999999999999999999999999999876 999999974
Q ss_pred -------CCHHHHHHhH-hcCCcccccCCChHHHH-HHhhh-------cC------cCccceEEEecCCCCCCCcccccc
Q 013684 116 -------EDLNAFNNYR-ACMPWLAVPYSDLETKK-ALNRK-------FD------IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 -------~~~~~~~~~~-~~~~~~~~~~~d~~~~~-~l~~~-------~~------v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++.++..+++ ++++.....+.+.+..+ .+... ++ +...|+++|||+ +|+++.+..
T Consensus 142 ~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk---~GkVv~~~~ 218 (236)
T PLN02399 142 QFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDK---NGKVVERYP 218 (236)
T ss_pred cccccCCCCHHHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECC---CCcEEEEEC
Confidence 3556788887 44443221221111001 22222 22 456799999999 999998765
|
|
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-16 Score=141.64 Aligned_cols=118 Identities=12% Similarity=0.159 Sum_probs=94.9
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCC-CEE-EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVG-KTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~g-k~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
+|..+|+|++ +.+| .+++++++| |++ |++||++|||.|..+++.|.+++++|+++ +++|++||+|.
T Consensus 1 vG~~aP~F~~~~~~g--~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~---------gv~vigvS~D~ 69 (203)
T cd03016 1 LGDTAPNFEADTTHG--PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKR---------NVKLIGLSVDS 69 (203)
T ss_pred CcCCCCCeEEecCCC--cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc---------CCEEEEEECCC
Confidence 4788999999 7776 489999998 654 55788999999999999999999999876 89999999995
Q ss_pred CH--HHHHHHHhcC--CCcccccCCchhHHHHHhcCcC--------ceeeEEEECCCCcEEEcc
Q 013684 289 DQ--TSFESYFGTM--PWLALPFGDPTIKELTKYFDVQ--------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~--~~~~~~~~~~--~~~~~p~~~d~~~~l~~~~~v~--------~~P~~~lid~~G~i~~~~ 340 (438)
.. .+|.+.+++. .-+.||+..|.+..+++.||+. ..|++||||++|+|+...
T Consensus 70 ~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~ 133 (203)
T cd03016 70 VESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLIL 133 (203)
T ss_pred HHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEE
Confidence 32 1233322221 2378999999999999999985 245799999999999874
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-16 Score=141.70 Aligned_cols=119 Identities=14% Similarity=0.197 Sum_probs=102.4
Q ss_pred hccchhHHHHHhhcccccCCCCCEEecccc-CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC--
Q 013684 40 MSLSQWYVQQLRRRMTSTKEIGEEVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-- 116 (438)
Q Consensus 40 g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~-- 116 (438)
|..+|+|+ +.+.+|+.++++++ +||++||+||++|||.|..+++.|.++++++++.+ +++++|+.|.
T Consensus 1 g~~~p~f~--------l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~~~ 70 (171)
T cd02969 1 GSPAPDFS--------LPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSNDIE 70 (171)
T ss_pred CCcCCCcc--------ccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCccc
Confidence 56788999 89999999999998 99999999999999999999999999999998764 9999999975
Q ss_pred -----CHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 117 -----DLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 -----~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+.++++.+++++......|.. ..+.+.|++..+|+++|||+ +|++++...
T Consensus 71 ~~~~d~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~~v~~~P~~~lid~---~G~v~~~~~ 127 (171)
T cd02969 71 AYPEDSPENMKAKAKEHGYPFPYLLDET--QEVAKAYGAACTPDFFLFDP---DGKLVYRGR 127 (171)
T ss_pred cccccCHHHHHHHHHHCCCCceEEECCc--hHHHHHcCCCcCCcEEEECC---CCeEEEeec
Confidence 67889999987764422222443 68899999999999999999 999987654
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-16 Score=158.16 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=98.9
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC---
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD--- 115 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D--- 115 (438)
.+..+|+|+ +.+.+|+.+.++ +||+|||+|||+||++|+.++|.|.+++++++..+ ++||.|+++
T Consensus 34 ~~~~lP~f~--------l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~ 101 (521)
T PRK14018 34 VPHTLSTLK--------TADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFL 101 (521)
T ss_pred ccCCCCCeE--------eecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEeccccc
Confidence 345678888 899999999988 89999999999999999999999999999987654 999999863
Q ss_pred --CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 116 --EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 --~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.+.++++++++.+++..+++ ..+....+.+.|+|.++|+++|||+ +|+++....
T Consensus 102 ~e~~~~~~~~~~~~~~y~~~pV-~~D~~~~lak~fgV~giPTt~IIDk---dGkIV~~~~ 157 (521)
T PRK14018 102 HEKKDGDFQKWYAGLDYPKLPV-LTDNGGTLAQSLNISVYPSWAIIGK---DGDVQRIVK 157 (521)
T ss_pred ccccHHHHHHHHHhCCCcccce-eccccHHHHHHcCCCCcCeEEEEcC---CCeEEEEEe
Confidence 45677888888777655443 2222378999999999999999999 999987754
|
|
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-16 Score=143.97 Aligned_cols=120 Identities=11% Similarity=0.134 Sum_probs=99.3
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEE-EEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGL-YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
.+|..+|+|++ +.+|+ ....++++||+++| +||++||++|..+++.|.+++++|+++ +++|++||+|.
T Consensus 8 ~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~---------g~~VigvS~Ds 77 (215)
T PRK13191 8 LIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL---------NTELIGLSVDS 77 (215)
T ss_pred cCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEECCC
Confidence 47999999999 88887 44335589997665 778999999999999999999999876 89999999996
Q ss_pred CHH--HHHHHHhcC-C-CcccccCCchhHHHHHhcCcC-------ceeeEEEECCCCcEEEcc
Q 013684 289 DQT--SFESYFGTM-P-WLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~~--~~~~~~~~~-~-~~~~p~~~d~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~ 340 (438)
... +|.+++++. + -+.||+..|.+.++++.||+. ..|++||||++|+|++..
T Consensus 78 ~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 140 (215)
T PRK13191 78 NISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLIL 140 (215)
T ss_pred HHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEE
Confidence 543 466666531 1 378999999999999999973 479999999999999874
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-16 Score=174.08 Aligned_cols=118 Identities=22% Similarity=0.300 Sum_probs=104.8
Q ss_pred hhcCCCCCcc-C--CCCCceeec-cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec-
Q 013684 212 LTNHDRGYLL-G--HPPDEKVPV-SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST- 286 (438)
Q Consensus 212 ~g~~~~~f~l-~--~~g~~~~~l-~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~- 286 (438)
.|..+|+|.. + .+|+ .+++ ++++||+|+|+|||+||++|+.++|.|++++++|+++ ++.||+|+.
T Consensus 393 ~g~~~p~f~~~~~~~~g~-~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~---------~~~vvgV~~~ 462 (1057)
T PLN02919 393 TATKVPEFPPKLDWLNTA-PLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ---------PFTVVGVHSA 462 (1057)
T ss_pred cCCcCCCCcccccccCCc-cccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC---------CeEEEEEecc
Confidence 4788999987 4 6888 8988 6899999999999999999999999999999999865 799999974
Q ss_pred --C--CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 287 --D--RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 287 --d--~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
| .+.+++++++.+++ +.+|+..|....+.+.|+|.++|+++|||++|+++.+.
T Consensus 463 ~~D~~~~~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~ 519 (1057)
T PLN02919 463 KFDNEKDLEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQL 519 (1057)
T ss_pred cccccccHHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEE
Confidence 3 24678899998887 78898888888999999999999999999999999873
|
|
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.7e-17 Score=143.12 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=95.8
Q ss_pred HHhhccchhHHHHHhhcccccCCCCC--EEecccc-CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGE--EVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~--~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
..+|.++|+|+ +.+.+|+ .++++++ +||+++|+||++||++|+.++|.++++++ .+ +++++|+
T Consensus 34 ~~vG~~ap~f~--------l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~--~~vi~V~ 99 (173)
T TIGR00385 34 ALIGKPVPAFP--------LAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DG--LPIVGVD 99 (173)
T ss_pred hhcCCCCCCcc--------ccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cC--CEEEEEE
Confidence 45789999999 8899987 4555565 79999999999999999999999987754 23 9999999
Q ss_pred cCCCHHHHHHhHhcCCcccccC-CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 114 SDEDLNAFNNYRACMPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~~~~~~~~~~~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.++..++..++++++++...++ .|.. ..+.+.|++.++|++++||+ +|+++++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~f~~v~~D~~--~~~~~~~~v~~~P~~~~id~---~G~i~~~~~ 155 (173)
T TIGR00385 100 YKDQSQNALKFLKELGNPYQAILIDPN--GKLGLDLGVYGAPETFLVDG---NGVILYRHA 155 (173)
T ss_pred CCCChHHHHHHHHHcCCCCceEEECCC--CchHHhcCCeeCCeEEEEcC---CceEEEEEe
Confidence 9888888888888776543221 2433 68889999999999999999 999987754
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.6e-16 Score=136.60 Aligned_cols=119 Identities=10% Similarity=0.030 Sum_probs=94.3
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEE------EEEecCCCHHHHH----HHH
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEV------VFVSTDRDQTSFE----SYF 297 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~v------v~is~d~~~~~~~----~~~ 297 (438)
.++.++++||+++|+|||+||++|+.+.|.+.++. ++ ++.+ ++|+.|+...... .|+
T Consensus 51 ~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~----~~---------~~~~~~y~~t~~IN~dd~~~~~~~fVk~fi 117 (184)
T TIGR01626 51 PWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIK----AA---------KFPPVKYQTTTIINADDAIVGTGMFVKSSA 117 (184)
T ss_pred eccHHHcCCCEEEEEEEecCCChhhccchHHHHHH----Hc---------CCCcccccceEEEECccchhhHHHHHHHHH
Confidence 67788899999999999999999999999999883 22 5777 9999987655444 444
Q ss_pred hcCCCcccc---cCCchhHHHHHhcCcCceeeE-EEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHh
Q 013684 298 GTMPWLALP---FGDPTIKELTKYFDVQGIPCL-VIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA 371 (438)
Q Consensus 298 ~~~~~~~~p---~~~d~~~~l~~~~~v~~~P~~-~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~ 371 (438)
++.. ..+| +..|..+.+...||+.++|++ ||||++|+|+.+. .| +.+++.++++...|++++
T Consensus 118 e~~~-~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~-------~G----~l~~ee~e~~~~li~~ll 183 (184)
T TIGR01626 118 KKGK-KENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVK-------EG----ALSDSDIQTVISLVNGLL 183 (184)
T ss_pred HHhc-ccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEE-------eC----CCCHHHHHHHHHHHHHHh
Confidence 4444 4555 777888889999999999988 8999999999884 34 456777777777776654
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=139.96 Aligned_cols=119 Identities=13% Similarity=0.204 Sum_probs=96.1
Q ss_pred hhhcCCCCCcc-CCCCCceeeccc-cCCCEEE-EEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSS-LVGKTVG-LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~-~~gk~vl-l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.+|..+|+|++ +.+|. +++++ ++||+++ ++||+.|||.|..+++.|.+++++|+++ +++||+||+|
T Consensus 10 ~vG~~aPdF~~~~~~g~--~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~---------~v~VigvS~D 78 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP--IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL---------NTELIGLSID 78 (222)
T ss_pred cCCCcCCCcEeEcCCCC--EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc---------CCEEEEEECC
Confidence 47899999999 88875 66766 5999655 5677999999999999999999999876 8999999999
Q ss_pred CCHH--HHHHHHhc-CC-CcccccCCchhHHHHHhcCcC-------ceeeEEEECCCCcEEEcc
Q 013684 288 RDQT--SFESYFGT-MP-WLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 288 ~~~~--~~~~~~~~-~~-~~~~p~~~d~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~ 340 (438)
.... +|.+.+.+ .+ -+.||+..|....+++.||+. ..|++||||++|+|++..
T Consensus 79 ~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 142 (222)
T PRK13189 79 QVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAIL 142 (222)
T ss_pred CHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEE
Confidence 6432 33333222 22 378999999999999999985 579999999999998774
|
|
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-16 Score=138.82 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=100.3
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccC-CccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|..+|+|+ +.+.+|+.+++++++||+++|+||++| |++|+.++|.|+++++++. +++|++||.|.
T Consensus 19 ~~G~~~P~f~--------l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D~ 86 (167)
T PRK00522 19 QVGDKAPDFT--------LVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISADL 86 (167)
T ss_pred CCCCCCCCeE--------EEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCCC
Confidence 4799999999 899999999999999999999999999 9999999999999999982 39999999984
Q ss_pred CHHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcCccc---------eEEEecCCCCCCCcccccc
Q 013684 117 DLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEGIP---------CLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P---------~~~lvd~~~~~G~v~~~~~ 173 (438)
....+++.++.+...++ +.|.. ...+++.|++...| +++|||+ +|+|++...
T Consensus 87 -~~~~~~f~~~~~~~~~~~lsD~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~---~G~I~~~~~ 148 (167)
T PRK00522 87 -PFAQKRFCGAEGLENVITLSDFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDE---NNKVVYSEL 148 (167)
T ss_pred -HHHHHHHHHhCCCCCceEeecCC-ccHHHHHhCCeecccccCCceeeEEEEECC---CCeEEEEEE
Confidence 45678888877654332 33422 25889999998777 9999999 999998765
|
|
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-16 Score=140.84 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=89.5
Q ss_pred ccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC----
Q 013684 41 SLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---- 116 (438)
Q Consensus 41 ~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~---- 116 (438)
..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++.| ++|++|+.|.
T Consensus 7 ~~~pdf~--------l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~ 76 (167)
T PLN02412 7 KSIYDFT--------VKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQ 76 (167)
T ss_pred CCCCceE--------EECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccC
Confidence 5678888 8999999999999999999999999999999999999999999999876 9999999752
Q ss_pred ---CHHHHHHhH-hcCCcccccCC--ChHHHHHHhhhc-------------CcCccceEEEecCCCCCCCcccccc
Q 013684 117 ---DLNAFNNYR-ACMPWLAVPYS--DLETKKALNRKF-------------DIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ---~~~~~~~~~-~~~~~~~~~~~--d~~~~~~l~~~~-------------~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.++..+++ ++++..+..+. +.+. ......| ++...|++||||+ +|+++.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g-~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~---~G~vv~~~~ 148 (167)
T PLN02412 77 EPGSNEEIQQTVCTRFKAEFPIFDKVDVNG-KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSK---EGKVVQRYA 148 (167)
T ss_pred CCCCHHHHHHHHHHccCCCCceEeEEeeCC-CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECC---CCcEEEEEC
Confidence 444555553 55442211111 1110 1122222 2667899999999 999998765
|
|
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-16 Score=134.75 Aligned_cols=118 Identities=15% Similarity=0.153 Sum_probs=97.2
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccC-CccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
+|..+|+|+ +.+.+|+.+++++++||+++|+||++| |++|+.++|.|++++++++ ++.+++|++|.
T Consensus 2 ~G~~aP~f~--------l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~- 68 (143)
T cd03014 2 VGDKAPDFT--------LVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADL- 68 (143)
T ss_pred CCCCCCCcE--------EECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCC-
Confidence 588999999 899999999999999999999999999 6999999999999999973 39999999985
Q ss_pred HHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcCc------cceEEEecCCCCCCCcccccc
Q 013684 118 LNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 118 ~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~------~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.+..+++.++++...++ ..|.. ...+.+.|++.. .|+++|||+ +|+|+....
T Consensus 69 ~~~~~~~~~~~~~~~~~~l~D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~---~G~I~~~~~ 127 (143)
T cd03014 69 PFAQKRWCGAEGVDNVTTLSDFR-DHSFGKAYGVLIKDLGLLARAVFVIDE---NGKVIYVEL 127 (143)
T ss_pred HHHHHHHHHhcCCCCceEeecCc-ccHHHHHhCCeeccCCccceEEEEEcC---CCeEEEEEE
Confidence 55667777777643333 22321 167888999863 799999999 999987765
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=134.83 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=80.5
Q ss_pred cCCCCCccCCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHH
Q 013684 214 NHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 293 (438)
Q Consensus 214 ~~~~~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~ 293 (438)
.+.++|.+ .+|+ .+++++++ +|+||++|||+|++++|.|++++++++ ++|++|++|.+.+
T Consensus 53 ~~~~~f~l-~dG~-~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~g------------~~Vi~Vs~D~~~~-- 112 (181)
T PRK13728 53 PAPRWFRL-SNGR-QVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQYG------------FSVFPYTLDGQGD-- 112 (181)
T ss_pred CCCCccCC-CCCC-EeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHcC------------CEEEEEEeCCCCC--
Confidence 35677885 5889 99999988 778999999999999999999998873 7899999986532
Q ss_pred HHHHhcCCCcccccCCc-hhHHHHHhcCc--CceeeEEEECCCCcEEE
Q 013684 294 ESYFGTMPWLALPFGDP-TIKELTKYFDV--QGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 294 ~~~~~~~~~~~~p~~~d-~~~~l~~~~~v--~~~P~~~lid~~G~i~~ 338 (438)
..||+..| ....+.+.|++ .++|++||||++|+++.
T Consensus 113 ---------~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 ---------TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred ---------CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 67888764 55678889995 69999999999999964
|
|
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-16 Score=134.23 Aligned_cols=122 Identities=17% Similarity=0.164 Sum_probs=99.8
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCC-CEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEG-KVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
.+|..+|+|. +.+.+|+.+++++++| |+++|.|| ++||+.|+..+|.|+++++++++.+ +.+++|+.|
T Consensus 2 ~~G~~~p~~~--------l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d 71 (149)
T cd03018 2 EVGDKAPDFE--------LPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVD 71 (149)
T ss_pred CCCCcCCCcE--------ecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCC
Confidence 3688999999 8999999999999999 99888888 9999999999999999999998765 999999988
Q ss_pred CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCc------cceEEEecCCCCCCCcccccc
Q 013684 116 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~------~P~~~lvd~~~~~G~v~~~~~ 173 (438)
. .+..+++.++++.....+.|......+.+.|++.. .|+++|||+ +|++++...
T Consensus 72 ~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~---~G~v~~~~~ 131 (149)
T cd03018 72 S-PFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDR---DGIIRYAWV 131 (149)
T ss_pred C-HHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECC---CCEEEEEEe
Confidence 4 56688888876543222334322267888999873 348999999 999988765
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.8e-16 Score=132.22 Aligned_cols=116 Identities=23% Similarity=0.300 Sum_probs=98.5
Q ss_pred cchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHH
Q 013684 42 LSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120 (438)
Q Consensus 42 ~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~ 120 (438)
.+|+|+ +.+.+|+.+++++++||+++|+|| ++|||.|..+++.|+++++++++.+ +++++|+.| +.+.
T Consensus 2 ~~p~f~--------l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d-~~~~ 70 (140)
T cd03017 2 KAPDFT--------LPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPD-SVES 70 (140)
T ss_pred CCCCcc--------ccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCC-CHHH
Confidence 578888 899999999999999999999999 5899999999999999999998765 999999998 4577
Q ss_pred HHHhHhcCCcccccCCChHHHHHHhhhcCcCcc---------ceEEEecCCCCCCCcccccc
Q 013684 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGI---------PCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 121 ~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~---------P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.++.+.++.....+.|.+ ..+.+.|++... |+++|||+ +|++++...
T Consensus 71 ~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~---~G~v~~~~~ 127 (140)
T cd03017 71 HAKFAEKYGLPFPLLSDPD--GKLAKAYGVWGEKKKKYMGIERSTFLIDP---DGKIVKVWR 127 (140)
T ss_pred HHHHHHHhCCCceEEECCc--cHHHHHhCCccccccccCCcceeEEEECC---CCEEEEEEe
Confidence 8888887654322233444 688999999988 99999999 999987754
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.2e-16 Score=134.20 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=98.9
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEecc-CCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|..+|+|+ +.+.+|+.+++++++||+++|+||++ ||+.|+.+++.|+++++++++.| +++|+|+.|
T Consensus 5 ~~g~~~p~f~--------l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d- 73 (154)
T PRK09437 5 KAGDIAPKFS--------LPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTD- 73 (154)
T ss_pred CCCCcCCCcE--------eeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCC-
Confidence 4689999999 89999999999999999999999986 67889999999999999999876 999999998
Q ss_pred CHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCcc------------ceEEEecCCCCCCCccccc
Q 013684 117 DLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI------------PCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~------------P~~~lvd~~~~~G~v~~~~ 172 (438)
+.+++.+|.++++.....+.|.. ..+.+.|++... |+.+|||+ +|+++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~---~G~i~~~~ 136 (154)
T PRK09437 74 KPEKLSRFAEKELLNFTLLSDED--HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDA---DGKIEHVF 136 (154)
T ss_pred CHHHHHHHHHHhCCCCeEEECCC--chHHHHhCCCcccccccccccCcceEEEEECC---CCEEEEEE
Confidence 45888888886653221122433 678889998654 77899999 99998774
|
|
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-15 Score=130.24 Aligned_cols=117 Identities=24% Similarity=0.423 Sum_probs=97.3
Q ss_pred chhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCcc-chhhHHHHHHHHHHHhcCC-CCEEEEEEecCC---C
Q 013684 43 SQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNNG-SDFEVVFVSSDE---D 117 (438)
Q Consensus 43 ~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~~~iv~vs~D~---~ 117 (438)
+|+|+ +.+.+|+.+++++++||+++|+||++||++ |..+++.|+++++++++.+ .++++++|+.|. +
T Consensus 2 ~p~f~--------l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~ 73 (142)
T cd02968 2 GPDFT--------LTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDT 73 (142)
T ss_pred CCceE--------EEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCC
Confidence 57777 899999999999999999999999999997 9999999999999998764 359999999974 4
Q ss_pred HHHHHHhHhcC--CcccccCCChHHHHHHhhhcCcCcc--------------ceEEEecCCCCCCCcccc
Q 013684 118 LNAFNNYRACM--PWLAVPYSDLETKKALNRKFDIEGI--------------PCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 118 ~~~~~~~~~~~--~~~~~~~~d~~~~~~l~~~~~v~~~--------------P~~~lvd~~~~~G~v~~~ 171 (438)
.+.++++.+++ +|..+.. ..+....+++.|++... |+.+|||+ +|+++..
T Consensus 74 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~---~G~i~~~ 139 (142)
T cd02968 74 PEVLKAYAKAFGPGWIGLTG-TPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDP---DGKLVRY 139 (142)
T ss_pred HHHHHHHHHHhCCCcEEEEC-CHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECC---CCCEEEe
Confidence 67788888876 4766655 33334788999987543 57999999 9998865
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-15 Score=136.00 Aligned_cols=118 Identities=20% Similarity=0.306 Sum_probs=94.6
Q ss_pred hhccchhHHHHHhhcccccCCCC----CEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIG----EEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g----~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
+|..+|+|+ +.+.+| +.+++++++||+++|+|| ++||++|..+++.|++++++|++.| +.+++||
T Consensus 1 vG~~aP~f~--------~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is 70 (173)
T cd03015 1 VGKKAPDFK--------ATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVS 70 (173)
T ss_pred CCCcCCCCE--------eecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEe
Confidence 588899999 888877 789999999999999999 8999999999999999999998865 9999999
Q ss_pred cCCCHH--HHHHhHh------cCCcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 114 SDEDLN--AFNNYRA------CMPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~~--~~~~~~~------~~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+|.... .+.+... ..+|..+ .|.. ..+.+.|++. .+|+++|||+ +|++++...
T Consensus 71 ~d~~~~~~~~~~~~~~~~~~~~~~f~~l--~D~~--~~~~~~~gv~~~~~~~~~p~~~lID~---~G~I~~~~~ 137 (173)
T cd03015 71 TDSHFSHLAWRNTPRKEGGLGKINFPLL--ADPK--KKISRDYGVLDEEEGVALRGTFIIDP---EGIIRHITV 137 (173)
T ss_pred cCCHHHHHHHHHhhhhhCCccCcceeEE--ECCc--hhHHHHhCCccccCCceeeEEEEECC---CCeEEEEEe
Confidence 985422 2333322 1233222 2443 7888999986 6789999999 999998864
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-15 Score=123.39 Aligned_cols=110 Identities=25% Similarity=0.383 Sum_probs=95.3
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC-HHHHHHhHhcCCccccc
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED-LNAFNNYRACMPWLAVP 134 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~-~~~~~~~~~~~~~~~~~ 134 (438)
+.+.+|+.+++++++||+++|+||++||++|+...+.|.++.+++++. ++.++.|++|.. .+.++++.+.+++....
T Consensus 4 ~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~ 81 (116)
T cd02966 4 LPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD--GVEVVGVNVDDDDPAAVKAFLKKYGITFPV 81 (116)
T ss_pred ccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC--CeEEEEEECCCCCHHHHHHHHHHcCCCcce
Confidence 678999999999999999999999999999999999999999999754 499999999987 99999999987743333
Q ss_pred CCChHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 135 YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 135 ~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.+.. ..+.+.|++..+|+++|+|+ +|+++.+.
T Consensus 82 ~~~~~--~~~~~~~~~~~~P~~~l~d~---~g~v~~~~ 114 (116)
T cd02966 82 LLDPD--GELAKAYGVRGLPTTFLIDR---DGRIRARH 114 (116)
T ss_pred EEcCc--chHHHhcCcCccceEEEECC---CCcEEEEe
Confidence 33432 68899999999999999999 99888653
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.9e-16 Score=138.10 Aligned_cols=121 Identities=12% Similarity=0.152 Sum_probs=90.5
Q ss_pred hccchhHHHHHhhcccccCCCCCEEeccccCCCEE-EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC--
Q 013684 40 MSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVT-ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-- 116 (438)
Q Consensus 40 g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~-- 116 (438)
+..+|+|+ +++.+|+.+++++++||++ ++.|||+|||+|+.++|.|++++++++++| ++|++|+.|.
T Consensus 17 ~~~~p~f~--------l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~~~~ 86 (183)
T PTZ00256 17 TKSFFEFE--------AIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCNQFM 86 (183)
T ss_pred CCcccceE--------eEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEeccccc
Confidence 46778999 8999999999999999964 566799999999999999999999998876 9999999642
Q ss_pred -----CHHHHHHhHh-cCCcccccCCC--hH--HHHHHh------------hhcCcCccce---EEEecCCCCCCCcccc
Q 013684 117 -----DLNAFNNYRA-CMPWLAVPYSD--LE--TKKALN------------RKFDIEGIPC---LVVLQPYDDKDDATLH 171 (438)
Q Consensus 117 -----~~~~~~~~~~-~~~~~~~~~~d--~~--~~~~l~------------~~~~v~~~P~---~~lvd~~~~~G~v~~~ 171 (438)
+.++..+++. ++++....+.+ .. ....+. ..+++.++|+ .||||+ +|+++.+
T Consensus 87 ~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~---~G~Iv~~ 163 (183)
T PTZ00256 87 EQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDG---QGKVVKY 163 (183)
T ss_pred ccCCCCHHHHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECC---CCCEEEE
Confidence 4567778865 55543222211 11 101122 1236778995 699999 9999987
Q ss_pred cc
Q 013684 172 DG 173 (438)
Q Consensus 172 ~~ 173 (438)
..
T Consensus 164 ~~ 165 (183)
T PTZ00256 164 FS 165 (183)
T ss_pred EC
Confidence 64
|
|
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-15 Score=136.84 Aligned_cols=118 Identities=25% Similarity=0.328 Sum_probs=93.9
Q ss_pred HhhccchhHHHHHhhcccccC-CCCC--EEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 38 LIMSLSQWYVQQLRRRMTSTK-EIGE--EVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~-~~g~--~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
.+|+.+|+|+ +.+ .+|+ .+++++++||+++|+|| ++||++|+.++|.|++++++|++.| ++|++||
T Consensus 3 ~~G~~aP~f~--------l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS 72 (187)
T TIGR03137 3 LINTEIKPFK--------ATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVS 72 (187)
T ss_pred ccCCcCCCcE--------eeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEe
Confidence 5799999999 777 5676 68888999999999999 9999999999999999999998876 9999999
Q ss_pred cCCCHHHHHHhHh------cCCcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 114 SDEDLNAFNNYRA------CMPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~~~~~~~~~------~~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.|.. ...+.+.. .+++.. +.|.+ ..+++.|++. ..|+++|||+ +|++++...
T Consensus 73 ~D~~-~~~~~~~~~~~~~~~l~fpl--lsD~~--~~~a~~~gv~~~~~g~~~p~tfiID~---~G~I~~~~~ 136 (187)
T TIGR03137 73 TDTH-FVHKAWHDTSEAIGKITYPM--LGDPT--GVLTRNFGVLIEEAGLADRGTFVIDP---EGVIQAVEI 136 (187)
T ss_pred CCCH-HHHHHHHhhhhhccCcceeE--EECCc--cHHHHHhCCcccCCCceeeEEEEECC---CCEEEEEEE
Confidence 9864 33333332 223221 23443 7899999986 4699999999 999987754
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-15 Score=132.29 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=71.9
Q ss_pred CCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC------
Q 013684 215 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD------ 287 (438)
Q Consensus 215 ~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d------ 287 (438)
..++|++ +.+|+ .+++++++||++||.|||+||++|. ..+.|++++++|+++ +++|++|+++
T Consensus 4 ~~~~f~~~~~~G~-~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~---------gl~Vlg~p~nqf~~qe 72 (183)
T PRK10606 4 SILTTVVTTIDGE-VTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ---------GFVVLGFPCNQFLGQE 72 (183)
T ss_pred CccCcEeECCCCC-EEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC---------CeEEEEeeccccccCC
Confidence 4678999 99999 9999999999999999999999996 699999999999876 8999999985
Q ss_pred -CCHHHHHHHHh-cCCCcccccC
Q 013684 288 -RDQTSFESYFG-TMPWLALPFG 308 (438)
Q Consensus 288 -~~~~~~~~~~~-~~~~~~~p~~ 308 (438)
.+.+++++|++ +++ +.||+.
T Consensus 73 ~~~~~ei~~f~~~~~g-~~Fpv~ 94 (183)
T PRK10606 73 PGSDEEIKTYCRTTWG-VTFPMF 94 (183)
T ss_pred CCCHHHHHHHHHHccC-CCceeE
Confidence 35678899997 555 778876
|
|
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-15 Score=132.01 Aligned_cols=113 Identities=13% Similarity=0.126 Sum_probs=85.6
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-------CCHHHHHHhHhc-
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNAFNNYRAC- 127 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-------~~~~~~~~~~~~- 127 (438)
+.+.+|+.+++++++||+++|+|||+|||+|+.++|.|++++++++++| ++|++|+.+ ++.+...+++++
T Consensus 7 l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~~~~~~~~~d~~~~~~~f~~~~ 84 (153)
T TIGR02540 7 VKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPCNQFGESEPDSSKEIESFARRN 84 (153)
T ss_pred eECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEeccccccCCCCCHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999876 999999851 456778888864
Q ss_pred CCcccccCCCh---HHHHHHhhhcC---cCccce----EEEecCCCCCCCcccccc
Q 013684 128 MPWLAVPYSDL---ETKKALNRKFD---IEGIPC----LVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 128 ~~~~~~~~~d~---~~~~~l~~~~~---v~~~P~----~~lvd~~~~~G~v~~~~~ 173 (438)
++.....+.+. +........|. ...+|+ .+|||+ +|+++.+..
T Consensus 85 ~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~---~G~v~~~~~ 137 (153)
T TIGR02540 85 YGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNP---EGQVVKFWR 137 (153)
T ss_pred cCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcC---CCcEEEEEC
Confidence 55432222220 00011111232 235898 999999 999997754
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=124.52 Aligned_cols=98 Identities=21% Similarity=0.405 Sum_probs=77.4
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
.+||+++|+||++||++|+.+.|.+.++++++.+ .+.|+.|++|.+. ..
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~----------~~~~v~v~vd~~~---------------------~~ 66 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD----------QVNFVMLNVDNPK---------------------WL 66 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc----------CeeEEEEEcCCcc---------------------cH
Confidence 4689999999999999999999999999998864 3789999888542 14
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccCCC
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPR 376 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~~~ 376 (438)
.+.+.|+|.++|+++++|++|+++.+. .|.. . .++|.+.|++++++.+.
T Consensus 67 ~~~~~~~V~~iPt~v~~~~~G~~v~~~-------~G~~----~---~~~l~~~l~~l~~~~~~ 115 (142)
T cd02950 67 PEIDRYRVDGIPHFVFLDREGNEEGQS-------IGLQ----P---KQVLAQNLDALVAGEPL 115 (142)
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEEEE-------eCCC----C---HHHHHHHHHHHHcCCCC
Confidence 578899999999999999999999873 3322 2 25566667776665544
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.8e-15 Score=126.31 Aligned_cols=115 Identities=20% Similarity=0.256 Sum_probs=95.9
Q ss_pred chhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHH
Q 013684 43 SQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 121 (438)
Q Consensus 43 ~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~ 121 (438)
+|+|+ +.+.+|+.+++++++||+++|+|| ++||++|..++|.|++++++++..+ +.+++|+.| +.+..
T Consensus 2 ~p~f~--------l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d-~~~~~ 70 (140)
T cd02971 2 APDFT--------LPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVD-SPFSH 70 (140)
T ss_pred CCCce--------eccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHHHH
Confidence 57788 899999999999999999999999 7899999999999999999997665 999999987 55677
Q ss_pred HHhHhcC-CcccccCCChHHHHHHhhhcCcCccc---------eEEEecCCCCCCCcccccc
Q 013684 122 NNYRACM-PWLAVPYSDLETKKALNRKFDIEGIP---------CLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 122 ~~~~~~~-~~~~~~~~d~~~~~~l~~~~~v~~~P---------~~~lvd~~~~~G~v~~~~~ 173 (438)
.++.+++ +.....+.|.. ..+.+.|++...| +++|||+ +|++++...
T Consensus 71 ~~~~~~~~~~~~~~l~D~~--~~~~~~~g~~~~~~~~~~~~~p~~~lid~---~g~i~~~~~ 127 (140)
T cd02971 71 KAWAEKEGGLNFPLLSDPD--GEFAKAYGVLIEKSAGGGLAARATFIIDP---DGKIRYVEV 127 (140)
T ss_pred HHHHhcccCCCceEEECCC--hHHHHHcCCccccccccCceeEEEEEECC---CCcEEEEEe
Confidence 8888876 43222223444 6888999988665 8999999 999998865
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-15 Score=127.15 Aligned_cols=120 Identities=20% Similarity=0.239 Sum_probs=105.8
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
+.+|+.+|+|+ +.+.+|+.++|++++||+|+|+|| ..++|.|..+.-.+++.+.+|+..| .+|++||.|
T Consensus 4 l~~G~~aPdF~--------Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~D 73 (157)
T COG1225 4 LKVGDKAPDFE--------LPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPD 73 (157)
T ss_pred CCCCCcCCCeE--------eecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCC
Confidence 45899999999 999999999999999999999999 8999999999999999999999976 999999999
Q ss_pred CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC------------ccceEEEecCCCCCCCccccc
Q 013684 116 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~------------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+..+.++|..+++..+...+|.+ .++++.||+. ..+++||||+ +|+|.+..
T Consensus 74 -s~~~~~~F~~k~~L~f~LLSD~~--~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~---dG~I~~~~ 136 (157)
T COG1225 74 -SPKSHKKFAEKHGLTFPLLSDED--GEVAEAYGVWGEKKMYGKEYMGIERSTFVIDP---DGKIRYVW 136 (157)
T ss_pred -CHHHHHHHHHHhCCCceeeECCc--HHHHHHhCcccccccCccccccccceEEEECC---CCeEEEEe
Confidence 56778899998887655555666 7899999983 4689999999 99998654
|
|
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-15 Score=123.98 Aligned_cols=103 Identities=20% Similarity=0.362 Sum_probs=84.6
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC-CHHHHHHhHhcCCccccc
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-DLNAFNNYRACMPWLAVP 134 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~-~~~~~~~~~~~~~~~~~~ 134 (438)
+++.+|+.+++++++||+++|+||++||++|+.++|.|.+++++ +.+++|++|. +.+++.++.++++.....
T Consensus 5 l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (123)
T cd03011 5 ATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKGYGFPV 77 (123)
T ss_pred eecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcCCCccE
Confidence 88999999999999999999999999999999999999999876 4577888775 478888888876532111
Q ss_pred CCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 135 YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 135 ~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
..+.+ ..+++.|++.++|+++++|+ +| ++..
T Consensus 78 ~~d~~--~~~~~~~~i~~~P~~~vid~---~g-i~~~ 108 (123)
T cd03011 78 INDPD--GVISARWGVSVTPAIVIVDP---GG-IVFV 108 (123)
T ss_pred EECCC--cHHHHhCCCCcccEEEEEcC---CC-eEEE
Confidence 11332 68999999999999999998 88 6544
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=125.96 Aligned_cols=114 Identities=19% Similarity=0.306 Sum_probs=90.6
Q ss_pred chhHHHHHhhcccccCCCCCEEeccccC-CC-EEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHH
Q 013684 43 SQWYVQQLRRRMTSTKEIGEEVKVSDLE-GK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120 (438)
Q Consensus 43 ~p~f~~~~~~~~~~~~~~g~~v~l~~~~-gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~ 120 (438)
+|+|+ +.+.+|+.++++++. +| +++++||++|||+|+.++|.|+++++++++.| +.+++|+.|.. +.
T Consensus 2 ~p~f~--------l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~-~~ 70 (149)
T cd02970 2 APDFE--------LPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESP-EK 70 (149)
T ss_pred CCCcc--------ccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCH-HH
Confidence 57788 899999999999874 45 55555679999999999999999999998776 99999998855 44
Q ss_pred HHHhHhcCCcccccCCChHHHHHHhhhcCcC-----------------------------ccceEEEecCCCCCCCcccc
Q 013684 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIE-----------------------------GIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 121 ~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~-----------------------------~~P~~~lvd~~~~~G~v~~~ 171 (438)
...+.+..++....+.|.+ ..+.+.|++. .+|..+|||+ +|++++.
T Consensus 71 ~~~~~~~~~~~~p~~~D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~---~g~i~~~ 145 (149)
T cd02970 71 LEAFDKGKFLPFPVYADPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGP---DGTILFA 145 (149)
T ss_pred HHHHHHhcCCCCeEEECCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECC---CCeEEEE
Confidence 4567766654333333554 7888999984 7999999999 9998865
Q ss_pred c
Q 013684 172 D 172 (438)
Q Consensus 172 ~ 172 (438)
.
T Consensus 146 ~ 146 (149)
T cd02970 146 H 146 (149)
T ss_pred e
Confidence 4
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.5e-15 Score=131.15 Aligned_cols=124 Identities=25% Similarity=0.305 Sum_probs=95.4
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
+.+|..+|+|+ .+.+. +.+...++|++++||+++|+|| ++||++|..+++.|++++++|.+.| +++++||.|
T Consensus 2 ~~~~~~~p~f~---~~~~~--~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D 74 (187)
T PRK10382 2 SLINTKIKPFK---NQAFK--NGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTD 74 (187)
T ss_pred CccCCcCCCcE---EEEEe--CCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCC
Confidence 35899999999 33333 4555678899999999999999 9999999999999999999999876 999999998
Q ss_pred CCHHHHHHhHhcC----CcccccCCChHHHHHHhhhcCc----Ccc--ceEEEecCCCCCCCcccccc
Q 013684 116 EDLNAFNNYRACM----PWLAVPYSDLETKKALNRKFDI----EGI--PCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ~~~~~~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v----~~~--P~~~lvd~~~~~G~v~~~~~ 173 (438)
.. ...+.|.+.. +..+....|.+ ..+++.|++ .++ |+++|||+ +|+|++...
T Consensus 75 ~~-~~~~a~~~~~~~~~~l~fpllsD~~--~~ia~~ygv~~~~~g~~~r~tfIID~---~G~I~~~~~ 136 (187)
T PRK10382 75 TH-FTHKAWHSSSETIAKIKYAMIGDPT--GALTRNFDNMREDEGLADRATFVVDP---QGIIQAIEV 136 (187)
T ss_pred CH-HHHHHHHHhhccccCCceeEEEcCc--hHHHHHcCCCcccCCceeeEEEEECC---CCEEEEEEE
Confidence 53 4444444321 21111223443 899999998 355 99999999 999987754
|
|
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-14 Score=133.80 Aligned_cols=121 Identities=12% Similarity=0.045 Sum_probs=97.8
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEE-EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVT-ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|+.+|+|+ +.+.+|+...+++++||++ |++||++|||+|..+++.|++++++|+++| ++|++||+|.
T Consensus 3 ~~Gd~aPdF~--------l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~ 72 (215)
T PRK13599 3 LLGEKFPSME--------VVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQ 72 (215)
T ss_pred CCCCCCCCCE--------eECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC
Confidence 5899999999 8899999888899999975 678899999999999999999999999876 9999999996
Q ss_pred C--HHHHHHhHhcC---CcccccCCChHHHHHHhhhcCcC-------ccceEEEecCCCCCCCcccccc
Q 013684 117 D--LNAFNNYRACM---PWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~--~~~~~~~~~~~---~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
. ...|.+++++. +..+..+.|.+ ..+++.||+. ..|++||||+ +|+++....
T Consensus 73 ~~~~~~w~~~i~~~~~~~i~fPil~D~~--~~va~~yg~~~~~~~~~~~R~tfIID~---dG~Ir~~~~ 136 (215)
T PRK13599 73 VFSHIKWVEWIKDNTNIAIPFPVIADDL--GKVSNQLGMIHPGKGTNTVRAVFIVDD---KGTIRLIMY 136 (215)
T ss_pred HHHHHHHHHhHHHhcCCCCceeEEECCC--chHHHHcCCCccCCCCceeeEEEEECC---CCEEEEEEE
Confidence 4 44566666532 32222233443 6889999973 6899999999 999987743
|
|
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-14 Score=115.09 Aligned_cols=75 Identities=19% Similarity=0.382 Sum_probs=63.8
Q ss_pred ccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 233 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 233 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
+.+||+|+|+|||+||++|+.+.|.|.++++++. ++.++.|+.|.+.+ .
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~-----------~v~~~~vd~d~~~~--------------------~ 60 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN-----------DVVFLLVNGDENDS--------------------T 60 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-----------CCEEEEEECCCChH--------------------H
Confidence 3468999999999999999999999999998882 47888888876521 2
Q ss_pred HHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 313 KELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 313 ~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..+++.|+|.++||++++ ++|+++.+
T Consensus 61 ~~l~~~~~V~~~Pt~~~~-~~G~~v~~ 86 (103)
T cd02985 61 MELCRREKIIEVPHFLFY-KDGEKIHE 86 (103)
T ss_pred HHHHHHcCCCcCCEEEEE-eCCeEEEE
Confidence 578899999999998888 89999876
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.7e-14 Score=121.75 Aligned_cols=161 Identities=17% Similarity=0.259 Sum_probs=121.3
Q ss_pred hhhhcCCCCCcc-CC-CC---CceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 013684 210 NLLTNHDRGYLL-GH-PP---DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 283 (438)
Q Consensus 210 ~~~g~~~~~f~l-~~-~g---~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~ 283 (438)
.++|..+|+|+. .. .| . +++++++.||+++|+|| +...+.|..+...+.+.+++|++. |++|++
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~-~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~---------g~eVig 72 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFE-EITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR---------GVEVIG 72 (194)
T ss_pred cccCCcCCCcEEEEEecCceee-EEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc---------CCEEEE
Confidence 468999999999 44 55 3 79999999999999999 678999999999999999999987 899999
Q ss_pred EecCCC--HHHHHHHHhcCCC---cccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcccchhhhhccccC
Q 013684 284 VSTDRD--QTSFESYFGTMPW---LALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENA 352 (438)
Q Consensus 284 is~d~~--~~~~~~~~~~~~~---~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~ 352 (438)
||+|.. ..+|++...+.+. +.||+..|...++++.||+- +.-.+|+||++|++++....++ ..
T Consensus 73 vS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~--~i---- 146 (194)
T COG0450 73 VSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPL--TI---- 146 (194)
T ss_pred EecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecC--CC----
Confidence 999963 3466666555554 78999999999999999983 5678999999999988642221 11
Q ss_pred CCCCHHHHHHHHHHHHHHhccCCCcccccccccccccccccCCCCC
Q 013684 353 YPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGP 398 (438)
Q Consensus 353 ~~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (438)
.+.++++...++.+ .....| +..+|..|..|...
T Consensus 147 ----GRn~dEilR~idAl-------q~~~~h-g~vcPanW~~G~~~ 180 (194)
T COG0450 147 ----GRNVDEILRVIDAL-------QFVAKH-GEVCPANWKPGDKT 180 (194)
T ss_pred ----CcCHHHHHHHHHHH-------HHHHHh-CCCccCCCCCCCcc
Confidence 22334444444321 123334 66777777666553
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-14 Score=159.67 Aligned_cols=122 Identities=20% Similarity=0.167 Sum_probs=99.1
Q ss_pred HHhhccchhHHHHHhhcccccC--CCCCEEec-cccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTK--EIGEEVKV-SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~--~~g~~v~l-~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
...|..+|+|. ..+ .+|+.+++ ++++||+|+|+|||+||++|+.++|.|+++++++++++ ++|++|+
T Consensus 391 ~~~g~~~p~f~--------~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~ 460 (1057)
T PLN02919 391 KKTATKVPEFP--------PKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVH 460 (1057)
T ss_pred cccCCcCCCCc--------ccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEe
Confidence 33588889998 544 68888987 68999999999999999999999999999999998765 9999997
Q ss_pred c---C--CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 114 S---D--EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~---D--~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
. | .+.+++++++.++++......|.. ..+.+.|++.++|+++|||+ +|+++.+..
T Consensus 461 ~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~--~~~~~~~~V~~iPt~ilid~---~G~iv~~~~ 520 (1057)
T PLN02919 461 SAKFDNEKDLEAIRNAVLRYNISHPVVNDGD--MYLWRELGVSSWPTFAVVSP---NGKLIAQLS 520 (1057)
T ss_pred cccccccccHHHHHHHHHHhCCCccEEECCc--hHHHHhcCCCccceEEEECC---CCeEEEEEe
Confidence 4 3 356778888887664322222433 67889999999999999999 999987643
|
|
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-14 Score=131.11 Aligned_cols=120 Identities=18% Similarity=0.297 Sum_probs=93.6
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEE-EEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTAL-YFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|+.+|+|+ +.+..| .+++++++||+++| +||++||++|..+++.|++++++|+++| ++|++||+|.
T Consensus 3 ~vG~~aP~F~--------~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~ 71 (202)
T PRK13190 3 KLGQKAPDFT--------VNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDS 71 (202)
T ss_pred CCCCCCCCcE--------EecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC
Confidence 4799999999 888877 69999999997766 6899999999999999999999999876 9999999996
Q ss_pred CHH--HHH-HhHhcCCc-cccc-CCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 117 DLN--AFN-NYRACMPW-LAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~--~~~-~~~~~~~~-~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
... +|. ++.++.+. ..+| +.|.+ ..+++.|++. .+|+++|||+ +|+|.+...
T Consensus 72 ~~~~~~w~~~~~~~~g~~~~fPll~D~~--~~ia~~ygv~~~~~g~~~p~~fiId~---~G~I~~~~~ 134 (202)
T PRK13190 72 IYSHIAWLRDIEERFGIKIPFPVIADID--KELAREYNLIDENSGATVRGVFIIDP---NQIVRWMIY 134 (202)
T ss_pred HHHHHHHHHhHHHhcCCCceEEEEECCC--hHHHHHcCCccccCCcEEeEEEEECC---CCEEEEEEE
Confidence 432 333 23333331 1222 23444 7899999984 5899999999 999886643
|
|
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-14 Score=126.24 Aligned_cols=125 Identities=11% Similarity=0.149 Sum_probs=90.0
Q ss_pred HHhhccchhHHHHHhhccccc--CCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEE-----
Q 013684 37 FLIMSLSQWYVQQLRRRMTST--KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEV----- 109 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~--~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~i----- 109 (438)
..+|.+.|..+=+-.+.+++. +.+.+.++.++++||+++|+|||+||++|+.+.|.|.++ +.+| +.+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~--~~~~~y~~ 96 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAK--FPPVKYQT 96 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcC--CCcccccc
Confidence 456888887651112222221 123356678889999999999999999999999999998 3333 777
Q ss_pred -EEEecCCCHHHHHHhHh--------cCCcccccCCChHHHHHHhhhcCcCccceE-EEecCCCCCCCcccccc
Q 013684 110 -VFVSSDEDLNAFNNYRA--------CMPWLAVPYSDLETKKALNRKFDIEGIPCL-VVLQPYDDKDDATLHDG 173 (438)
Q Consensus 110 -v~vs~D~~~~~~~~~~~--------~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~-~lvd~~~~~G~v~~~~~ 173 (438)
++|+.|++......|.+ .+||..+.. |.. ..+...|++.++|++ ||||+ +|+++.+..
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll-D~~--g~v~~~~gv~~~P~T~fVIDk---~GkVv~~~~ 164 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL-DDK--GAVKNAWQLNSEDSAIIVLDK---TGKVKFVKE 164 (184)
T ss_pred eEEEECccchhhHHHHHHHHHHHhcccCCcceEEE-CCc--chHHHhcCCCCCCceEEEECC---CCcEEEEEe
Confidence 99999987655555544 334543333 443 678889999999998 89999 999998765
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-13 Score=135.29 Aligned_cols=83 Identities=19% Similarity=0.328 Sum_probs=65.1
Q ss_pred CCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCC
Q 013684 58 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD 137 (438)
Q Consensus 58 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d 137 (438)
.++...+.-.-.....++|.|||+||++|++..|++.+.+..+++.+.++.+.-| |.+.+
T Consensus 29 ~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakV--Dat~~------------------ 88 (493)
T KOG0190|consen 29 VLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKV--DATEE------------------ 88 (493)
T ss_pred EEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEe--ecchh------------------
Confidence 3444444444445678999999999999999999999999999998655666555 44433
Q ss_pred hHHHHHHhhhcCcCccceEEEecCCCCCCCc
Q 013684 138 LETKKALNRKFDIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 138 ~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v 168 (438)
..++.+|+|.++||+.++. +|+.
T Consensus 89 ----~~~~~~y~v~gyPTlkiFr----nG~~ 111 (493)
T KOG0190|consen 89 ----SDLASKYEVRGYPTLKIFR----NGRS 111 (493)
T ss_pred ----hhhHhhhcCCCCCeEEEEe----cCCc
Confidence 7999999999999999998 6664
|
|
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=120.07 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=59.6
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++.+|+|||+||++|++++|.|++++++++ +.|++|++|.... ..+|...+.....
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~------------~~Vi~Vs~d~~~~-----------~~fp~~~~~~~~~ 106 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG------------LPVYAFSLDGQGL-----------TGFPDPLPATPEV 106 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC------------CcEEEEEeCCCcc-----------cccccccCCchHH
Confidence 4556999999999999999999999998763 6799999986431 1233333222233
Q ss_pred -HHhc---CcCceeeEEEECCCCcEEE
Q 013684 316 -TKYF---DVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 316 -~~~~---~v~~~P~~~lid~~G~i~~ 338 (438)
...| ++.++|++||||++|+++.
T Consensus 107 ~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 107 MQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred HHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 3455 8999999999999988654
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=112.96 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=64.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+|||+||++|+.+.|.|.++++++++. +.++.|++|.. .+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~----------v~f~kVDvD~~-----------------------~~ 59 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF----------AVIYLVDIDEV-----------------------PD 59 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc----------eEEEEEECCCC-----------------------HH
Confidence 4679999999999999999999999999998753 67888888865 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.|+|.++||++++ ++|+.+.+.
T Consensus 60 la~~~~V~~iPTf~~f-k~G~~v~~~ 84 (114)
T cd02954 60 FNKMYELYDPPTVMFF-FRNKHMKID 84 (114)
T ss_pred HHHHcCCCCCCEEEEE-ECCEEEEEE
Confidence 8999999999999999 899999875
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-14 Score=129.63 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=94.2
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEec-cccCCCEEEE-EEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKV-SDLEGKVTAL-YFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l-~~~~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
..+|..+|+|+ +.+.+|+ +.+ ++++||+++| +||++||+.|..+++.|++++++|+++| ++|++||+
T Consensus 7 ~~iG~~aPdF~--------l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~ 75 (215)
T PRK13191 7 PLIGEKFPEME--------VITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSV 75 (215)
T ss_pred ccCCCcCCCCE--------eecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEEC
Confidence 35899999999 8888997 555 5579997665 7889999999999999999999999876 99999999
Q ss_pred CCCHH--HHHHhHhc---CCcccccCCChHHHHHHhhhcCcC-------ccceEEEecCCCCCCCcccccc
Q 013684 115 DEDLN--AFNNYRAC---MPWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 115 D~~~~--~~~~~~~~---~~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.... +|.++.++ .+.......|.+ ..+++.||+. ..|+++|||+ +|+|.....
T Consensus 76 Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~---~G~Ir~~~~ 141 (215)
T PRK13191 76 DSNISHIEWVMWIEKNLKVEVPFPIIADPM--GNVAKRLGMIHAESSTATVRAVFIVDD---KGTVRLILY 141 (215)
T ss_pred CCHHHHHHHHhhHHHhcCCCCceEEEECCc--hHHHHHcCCcccccCCceeEEEEEECC---CCEEEEEEe
Confidence 96543 45555542 222222233443 7899999973 4799999999 999987654
|
|
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-13 Score=111.05 Aligned_cols=72 Identities=14% Similarity=0.262 Sum_probs=61.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.|++++|+|||+||++|+.+.|.+.++++++++. .+.++.+++| + .+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~---------~~~~~~vd~d-~-----------------------~~ 62 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD---------LLHFATAEAD-T-----------------------ID 62 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC---------cEEEEEEeCC-C-----------------------HH
Confidence 4789999999999999999999999999988643 4678888877 3 45
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.|+|+++||++++ ++|+.+.+.
T Consensus 63 ~~~~~~v~~~Pt~~~~-~~g~~~~~~ 87 (102)
T cd02948 63 TLKRYRGKCEPTFLFY-KNGELVAVI 87 (102)
T ss_pred HHHHcCCCcCcEEEEE-ECCEEEEEE
Confidence 6899999999999988 799988773
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=115.78 Aligned_cols=70 Identities=26% Similarity=0.575 Sum_probs=64.4
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+.+|+|+|||+||+||+.+.|.|+++..+|.++ +++.-|++|.. .++
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~----------~k~~kvdtD~~-----------------------~el 107 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK----------FKLYKVDTDEH-----------------------PEL 107 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe----------EEEEEEccccc-----------------------cch
Confidence 579999999999999999999999999999765 89999999866 678
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+..|+|.++||+++| ++|+.+.+
T Consensus 108 a~~Y~I~avPtvlvf-knGe~~d~ 130 (150)
T KOG0910|consen 108 AEDYEISAVPTVLVF-KNGEKVDR 130 (150)
T ss_pred HhhcceeeeeEEEEE-ECCEEeee
Confidence 999999999999999 89998866
|
|
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.1e-14 Score=130.99 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=94.2
Q ss_pred HHHhhccchhHHHHHhhcccccC-CCC--CEEecccc-CCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEE
Q 013684 36 RFLIMSLSQWYVQQLRRRMTSTK-EIG--EEVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVV 110 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~~-~~g--~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv 110 (438)
..++|+.+|+|+ +.+ .+| +.++++++ +||+++|+|| ++||++|..+++.|++++++|++.| ++|+
T Consensus 67 ~~~vGd~aPdF~--------l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~Vi 136 (261)
T PTZ00137 67 SSLVGKLMPSFK--------GTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVL 136 (261)
T ss_pred cccCCCCCCCCE--------eecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEE
Confidence 446899999999 665 345 46899998 8988888888 8999999999999999999999876 9999
Q ss_pred EEecCCC--HHHHHHh-Hhc---CCcccccCCChHHHHHHhhhcCcC-----ccceEEEecCCCCCCCcccccc
Q 013684 111 FVSSDED--LNAFNNY-RAC---MPWLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 111 ~vs~D~~--~~~~~~~-~~~---~~~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+||.|.. ..+|.+. .++ .+.....+.|.+ ..+++.||+. ..|+++|||+ +|+|++...
T Consensus 137 gIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~--~~iakayGv~~~~g~a~R~tFIID~---dG~I~~~~~ 205 (261)
T PTZ00137 137 GVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDIS--REVSKSFGLLRDEGFSHRASVLVDK---AGVVKHVAV 205 (261)
T ss_pred EEECCCHHHHHHHHhhhhhhccccCcceEEEEcCC--hHHHHHcCCCCcCCceecEEEEECC---CCEEEEEEE
Confidence 9999862 2334332 122 121111223443 7899999985 5899999999 999987754
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.6e-14 Score=127.41 Aligned_cols=121 Identities=21% Similarity=0.295 Sum_probs=91.5
Q ss_pred HhhccchhHHHHHhhcccccCCC--CCE---Eecccc-CCCEEEEEEec-cCCccchhhHHHHHHHHHHHhcCCCCEEEE
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEI--GEE---VKVSDL-EGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVV 110 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~--g~~---v~l~~~-~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv 110 (438)
++|..+|+|+ +.+.. |+. ++++++ +||+++|+||+ .||++|+.+++.|++++++|+++| ++|+
T Consensus 3 ~vg~~aPdF~--------~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vi 72 (200)
T PRK15000 3 LVTRQAPDFT--------AAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVV 72 (200)
T ss_pred cCCCcCCCCE--------eecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEE
Confidence 4799999999 77653 443 455555 89999999998 599999999999999999999876 9999
Q ss_pred EEecCCCH--HHHHHh-HhcCCc--cccc-CCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 111 FVSSDEDL--NAFNNY-RACMPW--LAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 111 ~vs~D~~~--~~~~~~-~~~~~~--~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+||.|... ..|.+. .+..+. ..+| +.|.+ ..+++.|++. .+|++++||+ +|+|++...
T Consensus 73 gvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~--~~ia~~ygv~~~~~g~~~r~tfiID~---~G~I~~~~~ 142 (200)
T PRK15000 73 GVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVK--REIQKAYGIEHPDEGVALRGSFLIDA---NGIVRHQVV 142 (200)
T ss_pred EEECCCHHHHHHHHhhHHHhCCccccCceEEECCC--cHHHHHcCCccCCCCcEEeEEEEECC---CCEEEEEEe
Confidence 99999543 333332 222221 1222 23443 7899999997 7999999999 999987643
|
|
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-13 Score=126.03 Aligned_cols=119 Identities=12% Similarity=0.166 Sum_probs=89.8
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCC-CEE-EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEG-KVT-ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~g-k~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
+|+.+|+|+ +.+.+|. +++++++| |++ |++||++|||.|..+++.|++++++|+++| ++|++||+|.
T Consensus 1 vG~~aP~F~--------~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~ 69 (203)
T cd03016 1 LGDTAPNFE--------ADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDS 69 (203)
T ss_pred CcCCCCCeE--------EecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCC
Confidence 588999999 8888884 89999988 654 558889999999999999999999999876 9999999995
Q ss_pred CH--HHHHHhHhc---CCcccccCCChHHHHHHhhhcCcC--------ccceEEEecCCCCCCCcccccc
Q 013684 117 DL--NAFNNYRAC---MPWLAVPYSDLETKKALNRKFDIE--------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~--~~~~~~~~~---~~~~~~~~~d~~~~~~l~~~~~v~--------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.. .+|.+.+.. .++.+..+.|.+ ..+++.|++. ..|+++|||+ +|+|+....
T Consensus 70 ~~~~~~~~~~i~~~~~~~~~fpil~D~~--~~ia~~yg~~~~~~~~~~~~r~~fiID~---~G~I~~~~~ 134 (203)
T cd03016 70 VESHIKWIEDIEEYTGVEIPFPIIADPD--REVAKLLGMIDPDAGSTLTVRAVFIIDP---DKKIRLILY 134 (203)
T ss_pred HHHHHHHHhhHHHhcCCCCceeEEECch--HHHHHHcCCccccCCCCceeeEEEEECC---CCeEEEEEe
Confidence 32 223332221 232222223444 7899999975 2457999999 999986654
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-13 Score=109.33 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=63.2
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|+|||+||++|+.+.|.+.++.+++.. .+.++.|++|.+.. | ..+
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~----------~~~~~~vdvd~~~~------------------d-~~~ 63 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI----------KKPILTLNLDAEDV------------------D-REK 63 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC----------CceEEEEECCcccc------------------c-cHH
Confidence 578999999999999999999999999887543 35788898886420 0 256
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.|+|.++||++++ ++|+.+.+.
T Consensus 64 l~~~~~I~~iPT~i~f-k~G~~v~~~ 88 (103)
T PHA02278 64 AVKLFDIMSTPVLIGY-KDGQLVKKY 88 (103)
T ss_pred HHHHCCCccccEEEEE-ECCEEEEEE
Confidence 8999999999999999 899999873
|
|
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-13 Score=117.90 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=99.6
Q ss_pred hhcCCCCCcc-CCC---CCceeeccc-cCCCEEEEEEe-cCCChhhhhh-hHHHHHHHHHHHhhhhhcCCCCCCE-EEEE
Q 013684 212 LTNHDRGYLL-GHP---PDEKVPVSS-LVGKTVGLYFS-ARWCIPCEKF-MPKLLSIYQKIKQNLVEKGDALEDF-EVVF 283 (438)
Q Consensus 212 ~g~~~~~f~l-~~~---g~~~~~l~~-~~gk~vll~F~-a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~~~~~~~-~vv~ 283 (438)
+|..+|+|.+ +.+ |+ .+++++ ++||+++|+|| +.|||.|..+ ++.+.+.+++|.+. +. .|++
T Consensus 1 vG~~aPdF~l~~~~~~~g~-~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~---------g~~~V~~ 70 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPN-PVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK---------GVDEVIC 70 (155)
T ss_pred CCCcCCCeEeeeeccCCCc-eeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC---------CCCEEEE
Confidence 4788999999 775 88 999999 68887777777 7899999999 99999999999876 77 5999
Q ss_pred EecCCCHHHHHHHHhcCCC-cccccCCchhHHHHHhcCcC-----------ceeeEEEECCCCcEEEcc
Q 013684 284 VSTDRDQTSFESYFGTMPW-LALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 284 is~d~~~~~~~~~~~~~~~-~~~p~~~d~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~~ 340 (438)
||.| +....++|.++++. ..||++.|.+.++++.||+. ..+.+++|| +|+|++..
T Consensus 71 iS~D-~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~ 137 (155)
T cd03013 71 VSVN-DPFVMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLF 137 (155)
T ss_pred EECC-CHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEE
Confidence 9999 55678888888874 48999999999999999982 146789999 79999865
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.2e-13 Score=110.01 Aligned_cols=73 Identities=16% Similarity=0.387 Sum_probs=63.8
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
..|++++|+||++||++|+.+.|.+.++.+++++. ++.++.|++|.+ .
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~---------~v~~~~vd~d~~-----------------------~ 69 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL---------GVGIATVNAGHE-----------------------R 69 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc---------CceEEEEecccc-----------------------H
Confidence 36899999999999999999999999999999753 577888877754 5
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+++.|+|.++||++++ ++|+++.+
T Consensus 70 ~l~~~~~V~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 70 RLARKLGAHSVPAIVGI-INGQVTFY 94 (111)
T ss_pred HHHHHcCCccCCEEEEE-ECCEEEEE
Confidence 68899999999999999 69988776
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.5e-13 Score=107.66 Aligned_cols=69 Identities=14% Similarity=0.305 Sum_probs=57.3
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
++++||+++|.|||+||++|+.+.|.+.+++++++ ++.++.|+.+..
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-----------~~~~~~vd~~~~---------------------- 60 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-----------QIRHLAIEESSI---------------------- 60 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-----------cCceEEEECCCC----------------------
Confidence 45689999999999999999999999999999885 356777755421
Q ss_pred hHHHHHhcCcCceeeEEEECCC
Q 013684 312 IKELTKYFDVQGIPCLVIIGPE 333 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~ 333 (438)
...+++.|+|.++||+++++++
T Consensus 61 ~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 61 KPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred CHHHHHhcCCeecCEEEEEcCC
Confidence 2578999999999999999644
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-13 Score=117.04 Aligned_cols=88 Identities=16% Similarity=0.281 Sum_probs=70.0
Q ss_pred CCCCCEEeccc--cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccC
Q 013684 58 KEIGEEVKVSD--LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY 135 (438)
Q Consensus 58 ~~~g~~v~l~~--~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~ 135 (438)
++.+....+.+ .+||+++|+|||+||++|+.+.|.|.++++++.+. +.++.|++|.+..
T Consensus 5 ~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~---------------- 65 (142)
T cd02950 5 QLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKW---------------- 65 (142)
T ss_pred HHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCccc----------------
Confidence 34444444443 36899999999999999999999999999998643 7788888875421
Q ss_pred CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 136 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 136 ~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
..+.+.|+|.++|+++++++ +|+++.+..
T Consensus 66 ------~~~~~~~~V~~iPt~v~~~~---~G~~v~~~~ 94 (142)
T cd02950 66 ------LPEIDRYRVDGIPHFVFLDR---EGNEEGQSI 94 (142)
T ss_pred ------HHHHHHcCCCCCCEEEEECC---CCCEEEEEe
Confidence 46678899999999999998 999886644
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-13 Score=122.98 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=92.9
Q ss_pred HHhhccchhHHHHHhhcccccC----CCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEE
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTK----EIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVF 111 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~----~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~ 111 (438)
..+|+.+|+|+ +.+ .+|+.+++++++||+++|+|| +.||++|..+++.|++++++|++.| ++|++
T Consensus 6 ~~~G~~aPdF~--------~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~ 75 (199)
T PTZ00253 6 AKINHPAPSFE--------EVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLA 75 (199)
T ss_pred cccCCcCCCCE--------eeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEE
Confidence 35799999999 544 566889999999999999999 5889999999999999999999876 99999
Q ss_pred EecCCCHHH--HHHhHh-c--CCccccc-CCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 112 VSSDEDLNA--FNNYRA-C--MPWLAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 112 vs~D~~~~~--~~~~~~-~--~~~~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
||.|..... |....+ . .+-..+| +.|.+ .++++.|++. .+|+.+|||+ +|+++....
T Consensus 76 IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~--~~ia~~ygv~~~~~g~~~r~~fiID~---~G~i~~~~~ 144 (199)
T PTZ00253 76 CSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKT--KSIARSYGVLEEEQGVAYRGLFIIDP---KGMLRQITV 144 (199)
T ss_pred EeCCCHHHHHHHHhChHhhCCccccccceEECcH--hHHHHHcCCcccCCCceEEEEEEECC---CCEEEEEEe
Confidence 999865432 211111 1 1111223 22443 8999999985 4799999999 999887543
|
|
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-13 Score=123.98 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=91.3
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccc-cCCCEEE-EEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSD-LEGKVTA-LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~-~~gk~vl-l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
+.+|+.+|+|+ +.+.+|+ +.+++ ++||+++ ++||++||+.|..+++.|++++++|+++| ++|++||+
T Consensus 9 ~~vG~~aPdF~--------~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~ 77 (222)
T PRK13189 9 PLIGDKFPEFE--------VKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSI 77 (222)
T ss_pred ccCCCcCCCcE--------eEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEEC
Confidence 35899999999 8888886 77776 4999655 57789999999999999999999999876 99999999
Q ss_pred CCCHH--HHHHhHhc-C--CcccccCCChHHHHHHhhhcCcC-------ccceEEEecCCCCCCCcccccc
Q 013684 115 DEDLN--AFNNYRAC-M--PWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 115 D~~~~--~~~~~~~~-~--~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.... +|.+...+ . +..+..+.|.+ ..+++.|++. .+|++||||+ +|+|++...
T Consensus 78 D~~~~h~aw~~~~~~~~g~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~---~G~Ir~~~~ 143 (222)
T PRK13189 78 DQVFSHIKWVEWIKEKLGVEIEFPIIADDR--GEIAKKLGMISPGKGTNTVRAVFIIDP---KGIIRAILY 143 (222)
T ss_pred CCHHHHHHHHHhHHHhcCcCcceeEEEcCc--cHHHHHhCCCccccCCCceeEEEEECC---CCeEEEEEe
Confidence 96432 33333221 1 22111222443 7899999975 5799999999 999976643
|
|
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-13 Score=108.68 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=62.5
Q ss_pred ccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhh
Q 013684 68 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 147 (438)
Q Consensus 68 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 147 (438)
+.+||+|+|+|||+||++|+.+.|.|.++++++ . ++.++.|+.|.+.. ...+++.
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~--~v~~~~vd~d~~~~---------------------~~~l~~~ 66 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--N--DVVFLLVNGDENDS---------------------TMELCRR 66 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--C--CCEEEEEECCCChH---------------------HHHHHHH
Confidence 346899999999999999999999999999998 2 37788888775422 1578899
Q ss_pred cCcCccceEEEecCCCCCCCccccc
Q 013684 148 FDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 148 ~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|+|.++||++++ + +|+++.+.
T Consensus 67 ~~V~~~Pt~~~~-~---~G~~v~~~ 87 (103)
T cd02985 67 EKIIEVPHFLFY-K---DGEKIHEE 87 (103)
T ss_pred cCCCcCCEEEEE-e---CCeEEEEE
Confidence 999999998888 5 88877553
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-13 Score=119.67 Aligned_cols=90 Identities=18% Similarity=0.289 Sum_probs=70.7
Q ss_pred CCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCC
Q 013684 58 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD 137 (438)
Q Consensus 58 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d 137 (438)
..+|+.+++++++ +|+||++|||+|++++|.|+++++++ + ++|++|++|.+.+ ..++.+ ..+
T Consensus 60 l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g--~~Vi~Vs~D~~~~--------~~fPv~-~dd 121 (181)
T PRK13728 60 LSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---G--FSVFPYTLDGQGD--------TAFPEA-LPA 121 (181)
T ss_pred CCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---C--CEEEEEEeCCCCC--------CCCceE-ecC
Confidence 4699999999997 77899999999999999999999997 3 8999999986532 121111 101
Q ss_pred hHHHHHHhhhcCc--CccceEEEecCCCCCCCccc
Q 013684 138 LETKKALNRKFDI--EGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 138 ~~~~~~l~~~~~v--~~~P~~~lvd~~~~~G~v~~ 170 (438)
.. ..+.+.|++ .++|++||||+ +|+++.
T Consensus 122 ~~--~~~~~~~g~~~~~iPttfLId~---~G~i~~ 151 (181)
T PRK13728 122 PP--DVMQTFFPNIPVATPTTFLVNV---NTLEAL 151 (181)
T ss_pred ch--hHHHHHhCCCCCCCCeEEEEeC---CCcEEE
Confidence 22 567778985 69999999999 998863
|
|
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=104.21 Aligned_cols=71 Identities=21% Similarity=0.373 Sum_probs=61.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+|++++|+||++||++|+.+.|.+.++++.+.+ .+.++.|+++.. ..
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~ 57 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG----------QFVLAKVNCDAQ-----------------------PQ 57 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC----------cEEEEEEeccCC-----------------------HH
Confidence 478999999999999999999999999998864 367778877754 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|++++++ +|+++.+
T Consensus 58 l~~~~~i~~~Pt~~~~~-~g~~~~~ 81 (96)
T cd02956 58 IAQQFGVQALPTVYLFA-AGQPVDG 81 (96)
T ss_pred HHHHcCCCCCCEEEEEe-CCEEeee
Confidence 89999999999999995 8988765
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=8e-13 Score=107.92 Aligned_cols=73 Identities=23% Similarity=0.424 Sum_probs=63.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++|+|.|||+|||||+.+.|.|.++++++.+. +.++.|++|.. .++++.|+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~------------------------~~la~~~~ 65 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEV------------------------PDFNKMYE 65 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCC------------------------HHHHHHcC
Confidence 4689999999999999999999999999998543 67787877754 68899999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.++||++++. +|+.+.+..
T Consensus 66 V~~iPTf~~fk----~G~~v~~~~ 85 (114)
T cd02954 66 LYDPPTVMFFF----RNKHMKIDL 85 (114)
T ss_pred CCCCCEEEEEE----CCEEEEEEc
Confidence 99999999998 888876653
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.8e-13 Score=106.54 Aligned_cols=70 Identities=31% Similarity=0.552 Sum_probs=62.0
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+|.++|+|+|+|||||+.+.|.+.+|+.+|. ++.++.|++|.. .+
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~-----------~v~Flkvdvde~-----------------------~~ 65 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP-----------DVVFLKVDVDEL-----------------------EE 65 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCC-----------CCEEEEEecccC-----------------------Hh
Confidence 36899999999999999999999999999987 357788887752 77
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|+++||++++ ++|+.+.+
T Consensus 66 ~~~~~~V~~~PTf~f~-k~g~~~~~ 89 (106)
T KOG0907|consen 66 VAKEFNVKAMPTFVFY-KGGEEVDE 89 (106)
T ss_pred HHHhcCceEeeEEEEE-ECCEEEEE
Confidence 8999999999999999 89988877
|
|
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-12 Score=107.58 Aligned_cols=87 Identities=28% Similarity=0.469 Sum_probs=66.0
Q ss_pred cCC-CEEEEEEecCCChhhhhhhHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC
Q 013684 234 LVG-KTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 309 (438)
Q Consensus 234 ~~g-k~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~ 309 (438)
-.| |+++|+||++||++|+.+.+.+. .+.+.+.+ ++.++.|++|.+.+.. . ++...
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~d~~~~~~-~---------~~~~~ 70 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA----------HFVVVYINIDGDKEVT-D---------FDGEA 70 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh----------heEEEEEEccCCceee-c---------cCCCC
Confidence 357 89999999999999999999885 55556653 4788889887653211 1 11112
Q ss_pred chhHHHHHhcCcCceeeEEEECCC-CcEEEcc
Q 013684 310 PTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQ 340 (438)
Q Consensus 310 d~~~~l~~~~~v~~~P~~~lid~~-G~i~~~~ 340 (438)
.....++..|+|.++||++++|++ |+++.+.
T Consensus 71 ~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~ 102 (125)
T cd02951 71 LSEKELARKYRVRFTPTVIFLDPEGGKEIARL 102 (125)
T ss_pred ccHHHHHHHcCCccccEEEEEcCCCCceeEEe
Confidence 245789999999999999999999 8998773
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-12 Score=104.45 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=62.2
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
..+++++|+||++||++|+.+.|.+.++++++++ .+.++.|++|.. .
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~----------~~~~~~vd~~~~-----------------------~ 62 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG----------VIRIGAVNCGDD-----------------------R 62 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC----------ceEEEEEeCCcc-----------------------H
Confidence 3568999999999999999999999999999874 378888888754 5
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+++.|+|+++||++++ ++|+.+.+
T Consensus 63 ~~~~~~~v~~~Pt~~~~-~~g~~~~~ 87 (101)
T cd03003 63 MLCRSQGVNSYPSLYVF-PSGMNPEK 87 (101)
T ss_pred HHHHHcCCCccCEEEEE-cCCCCccc
Confidence 68999999999999999 78876544
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.2e-12 Score=110.10 Aligned_cols=87 Identities=17% Similarity=0.274 Sum_probs=61.0
Q ss_pred CCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHH
Q 013684 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLET 140 (438)
Q Consensus 61 g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~ 140 (438)
|+.+.++ ++.+|+|||+||++|++++|.|+++++++ + +.|++|++|.... ..++ ..+ +.+.
T Consensus 44 G~~~~l~----~~~lvnFWAsWCppCr~e~P~L~~l~~~~---~--~~Vi~Vs~d~~~~------~~fp---~~~-~~~~ 104 (153)
T TIGR02738 44 GRHANQD----DYALVFFYQSTCPYCHQFAPVLKRFSQQF---G--LPVYAFSLDGQGL------TGFP---DPL-PATP 104 (153)
T ss_pred chhhhcC----CCEEEEEECCCChhHHHHHHHHHHHHHHc---C--CcEEEEEeCCCcc------cccc---ccc-CCch
Confidence 4444444 45699999999999999999999999886 2 7899999986431 1122 111 1111
Q ss_pred HHHHhhhc---CcCccceEEEecCCCCCCCccc
Q 013684 141 KKALNRKF---DIEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 141 ~~~l~~~~---~v~~~P~~~lvd~~~~~G~v~~ 170 (438)
..+...| ++.++|++++||+ +|.++.
T Consensus 105 -~~~~~~~~~~~v~~iPTt~LID~---~G~~i~ 133 (153)
T TIGR02738 105 -EVMQTFFPNPRPVVTPATFLVNV---NTRKAY 133 (153)
T ss_pred -HHHHHHhccCCCCCCCeEEEEeC---CCCEEE
Confidence 2233445 8899999999999 987643
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-11 Score=123.12 Aligned_cols=68 Identities=22% Similarity=0.473 Sum_probs=56.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|+|||+||++|+.+.|.+.++++.++..+.++.++.|+.+.. .++++.|+
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~ 72 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE------------------------KDLAQKYG 72 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc------------------------HHHHHhCC
Confidence 578999999999999999999999999999987654466665554432 68899999
Q ss_pred cCccceEEEecC
Q 013684 150 IEGIPCLVVLQP 161 (438)
Q Consensus 150 v~~~P~~~lvd~ 161 (438)
|.++|+++++..
T Consensus 73 i~~~Pt~~~~~~ 84 (462)
T TIGR01130 73 VSGYPTLKIFRN 84 (462)
T ss_pred CccccEEEEEeC
Confidence 999999999973
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-12 Score=103.81 Aligned_cols=68 Identities=15% Similarity=0.347 Sum_probs=56.1
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
++.+||+++|+|||+||++|+.+.|.|.++++++++ +.++.|+.+. .. ..+++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~-~~----------------------~~l~~ 66 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESS-IK----------------------PSLLS 66 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCC-CC----------------------HHHHH
Confidence 456899999999999999999999999999999842 5566664331 11 57889
Q ss_pred hcCcCccceEEEecC
Q 013684 147 KFDIEGIPCLVVLQP 161 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~ 161 (438)
+|+|.++||++++++
T Consensus 67 ~~~V~~~PT~~lf~~ 81 (100)
T cd02999 67 RYGVVGFPTILLFNS 81 (100)
T ss_pred hcCCeecCEEEEEcC
Confidence 999999999999984
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.7e-12 Score=102.29 Aligned_cols=71 Identities=23% Similarity=0.508 Sum_probs=62.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++++++.+ ++.++.|+++.. ..
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~----------~~~~~~vd~~~~-----------------------~~ 66 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG----------KLTVAKLNIDQN-----------------------PG 66 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC----------CcEEEEEECCCC-----------------------hh
Confidence 367999999999999999999999999999864 478888888765 45
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|++.++|+++++ ++|+++.+
T Consensus 67 ~~~~~~v~~~Pt~~~~-~~G~~~~~ 90 (109)
T PRK09381 67 TAPKYGIRGIPTLLLF-KNGEVAAT 90 (109)
T ss_pred HHHhCCCCcCCEEEEE-eCCeEEEE
Confidence 6788999999999999 79998876
|
|
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-12 Score=116.36 Aligned_cols=78 Identities=15% Similarity=0.054 Sum_probs=67.6
Q ss_pred cchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC------
Q 013684 42 LSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD------ 115 (438)
Q Consensus 42 ~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D------ 115 (438)
.+++|+ +.+.+|+.++|++++||+|||.|||+||++|+ ++|.|+++++++++.| ++|++|+.+
T Consensus 4 ~~~~f~--------~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe 72 (183)
T PRK10606 4 SILTTV--------VTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG--FVVLGFPCNQFLGQE 72 (183)
T ss_pred CccCcE--------eECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC--eEEEEeeccccccCC
Confidence 356777 88999999999999999999999999999996 6999999999999876 999999985
Q ss_pred -CCHHHHHHhHh-cCCc
Q 013684 116 -EDLNAFNNYRA-CMPW 130 (438)
Q Consensus 116 -~~~~~~~~~~~-~~~~ 130 (438)
.+.++..+|++ +++.
T Consensus 73 ~~~~~ei~~f~~~~~g~ 89 (183)
T PRK10606 73 PGSDEEIKTYCRTTWGV 89 (183)
T ss_pred CCCHHHHHHHHHHccCC
Confidence 36677888886 5543
|
|
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-12 Score=121.18 Aligned_cols=87 Identities=20% Similarity=0.319 Sum_probs=69.6
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
...+++++|+++||+||++||++|+.+.|.|.+++++++ +.|++|++|.+.. -.||.
T Consensus 158 ~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg------------~~Vi~VsvD~~~~-----------~~fp~ 214 (271)
T TIGR02740 158 DRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG------------IEVLPVSVDGGPL-----------PGFPN 214 (271)
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC------------cEEEEEeCCCCcc-----------ccCCc
Confidence 356778889999999999999999999999999988873 6899999986532 12444
Q ss_pred CCchhHHHHHhcCcCceeeEEEECCCCcEEE
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
..+ +..+.+.|||.++|+++|+|++|+.+.
T Consensus 215 ~~~-d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 215 ARP-DAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred ccC-CHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 432 356789999999999999999654443
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.5e-12 Score=102.59 Aligned_cols=77 Identities=25% Similarity=0.445 Sum_probs=62.0
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 310 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 310 (438)
..||+++|+||++||++|+.+.+.+ .++.+.+.+ ++.++.|+++.+..
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~----------~~~~~~vd~~~~~~------------------- 59 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK----------DVVLLRADWTKNDP------------------- 59 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC----------CeEEEEEecCCCCH-------------------
Confidence 3578999999999999999999887 567777653 47888888764321
Q ss_pred hhHHHHHhcCcCceeeEEEECC-CCcEEEc
Q 013684 311 TIKELTKYFDVQGIPCLVIIGP-EGKTVTK 339 (438)
Q Consensus 311 ~~~~l~~~~~v~~~P~~~lid~-~G~i~~~ 339 (438)
....++++|++.++||++++++ +|+++.+
T Consensus 60 ~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 60 EITALLKRFGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCCCCcc
Confidence 1367889999999999999988 8988766
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=110.64 Aligned_cols=121 Identities=21% Similarity=0.361 Sum_probs=96.2
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCCh-hhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 288 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~- 288 (438)
.....++|++ |.+|+ .+++++++||+++|+|..+.|| .|...+..|.++.+++.++ +.++++|+||+|.
T Consensus 28 ~~~~~~~f~L~d~~G~-~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~-------~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGK-TVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE-------GKDVQFVFISVDPE 99 (174)
T ss_dssp TSCSSST-EEEETTSS-EEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT-------TTTEEEEEEESSTT
T ss_pred CCccCCCcEEEcCCCC-EecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc-------cCceEEEEEEeCCC
Confidence 3456789999 99999 9999999999999999999998 6999999999999999875 4689999999995
Q ss_pred --CHHHHHHHHhcCC--CcccccCCchhHHHHHhcCcC----------------ceeeEEEECCCCcEEEcc
Q 013684 289 --DQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQ----------------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 --~~~~~~~~~~~~~--~~~~p~~~d~~~~l~~~~~v~----------------~~P~~~lid~~G~i~~~~ 340 (438)
+.+.+++|.+.++ |..+....+...++.+.|++. ....++|||++|+++...
T Consensus 100 ~DTp~~L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y 171 (174)
T PF02630_consen 100 RDTPEVLKKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIY 171 (174)
T ss_dssp TC-HHHHHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEE
T ss_pred CCCHHHHHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEE
Confidence 3567888988654 444444445667788888863 233789999999998763
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-12 Score=108.69 Aligned_cols=70 Identities=21% Similarity=0.484 Sum_probs=62.3
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+.+|+|+|||+||+||+.+.|.|+++.+++++. +.+.-|++|+. .+++..|+|
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~------------------------~ela~~Y~I 113 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEH------------------------PELAEDYEI 113 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccc------------------------cchHhhcce
Confidence 579999999999999999999999999999654 88988888765 678899999
Q ss_pred CccceEEEecCCCCCCCcccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~ 171 (438)
.++|++++|+ +|+.+.+
T Consensus 114 ~avPtvlvfk----nGe~~d~ 130 (150)
T KOG0910|consen 114 SAVPTVLVFK----NGEKVDR 130 (150)
T ss_pred eeeeEEEEEE----CCEEeee
Confidence 9999999999 7877744
|
|
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-12 Score=103.93 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|.|||+||++|+.+.|.+.++++++++. +.++.|++|.+ ..
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~----------v~~~~Vd~d~~-----------------------~~ 74 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ----------VLFVAINCWWP-----------------------QG 74 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC----------eEEEEEECCCC-----------------------hH
Confidence 5689999999999999999999999999999753 77888888755 45
Q ss_pred HH-HhcCcCceeeEEEECCCCcEE
Q 013684 315 LT-KYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 315 l~-~~~~v~~~P~~~lid~~G~i~ 337 (438)
++ +.|+|.++||+.++ ++|+..
T Consensus 75 l~~~~~~I~~~PTl~lf-~~g~~~ 97 (113)
T cd03006 75 KCRKQKHFFYFPVIHLY-YRSRGP 97 (113)
T ss_pred HHHHhcCCcccCEEEEE-ECCccc
Confidence 66 58999999999999 777754
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=99.44 Aligned_cols=71 Identities=18% Similarity=0.300 Sum_probs=57.7
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|.||++||++|+.+.|.+.++++++++. +.++.+..++++.. ..
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~-------~~~~~~~~vd~~~~-----------------------~~ 63 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSS-------GSPVRVGKLDATAY-----------------------SS 63 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhc-------CCcEEEEEEECccC-----------------------Hh
Confidence 4579999999999999999999999999999754 23466666766543 56
Q ss_pred HHHhcCcCceeeEEEECCCCcE
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i 336 (438)
+++.|+|.++||++++ .+|.+
T Consensus 64 ~~~~~~I~~~Pt~~l~-~~~~~ 84 (104)
T cd03000 64 IASEFGVRGYPTIKLL-KGDLA 84 (104)
T ss_pred HHhhcCCccccEEEEE-cCCCc
Confidence 7889999999999999 45543
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.8e-12 Score=117.20 Aligned_cols=71 Identities=28% Similarity=0.514 Sum_probs=64.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+-++|||+||++||++|+.++|.|.++..+|+++ +.++.|++|.+ ..
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~----------f~LakvN~D~~-----------------------p~ 88 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK----------FKLAKVNCDAE-----------------------PM 88 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc----------eEEEEecCCcc-----------------------hh
Confidence 4469999999999999999999999999999876 88888888876 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+...|||+++||+|+| ++|+.+.-
T Consensus 89 vAaqfgiqsIPtV~af-~dGqpVdg 112 (304)
T COG3118 89 VAAQFGVQSIPTVYAF-KDGQPVDG 112 (304)
T ss_pred HHHHhCcCcCCeEEEe-eCCcCccc
Confidence 8999999999999999 99999875
|
|
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.7e-12 Score=102.45 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=62.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|+|||+||+||+.+.|.+.++++++.. +..++.|++|.+.. + ..++++.|+
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~~~~-----------------d---~~~l~~~~~ 69 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDAEDV-----------------D---REKAVKLFD 69 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCcccc-----------------c---cHHHHHHCC
Confidence 578999999999999999999999999887532 25678888875421 1 157899999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.++||++++. +|+.+.+..
T Consensus 70 I~~iPT~i~fk----~G~~v~~~~ 89 (103)
T PHA02278 70 IMSTPVLIGYK----DGQLVKKYE 89 (103)
T ss_pred CccccEEEEEE----CCEEEEEEe
Confidence 99999999998 788776543
|
|
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-12 Score=106.23 Aligned_cols=77 Identities=22% Similarity=0.464 Sum_probs=58.5
Q ss_pred ccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 013684 231 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 310 (438)
Q Consensus 231 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 310 (438)
.+..+||+|+|+|||+||++|+.+.|.+.+..+.... +..++.|.+|.+.
T Consensus 14 ~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~----------~~~fv~v~vd~~~-------------------- 63 (117)
T cd02959 14 EAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL----------SHNFVMVNLEDDE-------------------- 63 (117)
T ss_pred HHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh----------cCcEEEEEecCCC--------------------
Confidence 3445689999999999999999999999887665432 2356667776542
Q ss_pred hhHHHHHhcCcCc--eeeEEEECCCCcEEEc
Q 013684 311 TIKELTKYFDVQG--IPCLVIIGPEGKTVTK 339 (438)
Q Consensus 311 ~~~~l~~~~~v~~--~P~~~lid~~G~i~~~ 339 (438)
....+.|++.+ +||++++|++|+++.+
T Consensus 64 --~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 64 --EPKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred --CchhhhcccCCCccceEEEECCCCCCchh
Confidence 12345677876 9999999999999875
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-12 Score=101.67 Aligned_cols=73 Identities=11% Similarity=0.238 Sum_probs=59.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.|++++|+|||+||++|+.+.|.|.++++++++. .+.++.++.| . .+++++|+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~--~~~~~~vd~d-~------------------------~~~~~~~~ 68 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD--LLHFATAEAD-T------------------------IDTLKRYR 68 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC--cEEEEEEeCC-C------------------------HHHHHHcC
Confidence 4789999999999999999999999999998643 2677777666 2 45689999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.++|+++++. +|+.+.+..
T Consensus 69 v~~~Pt~~~~~----~g~~~~~~~ 88 (102)
T cd02948 69 GKCEPTFLFYK----NGELVAVIR 88 (102)
T ss_pred CCcCcEEEEEE----CCEEEEEEe
Confidence 99999988886 787765543
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=107.23 Aligned_cols=74 Identities=20% Similarity=0.383 Sum_probs=63.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|+||++||++|+.+.|.+.++++++.+. ++.++.|++|.. .+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~---------~v~f~~VDvd~~-----------------------~~ 93 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN---------NLKFGKIDIGRF-----------------------PN 93 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC---------CeEEEEEECCCC-----------------------HH
Confidence 4679999999999999999999999999988643 689999998866 45
Q ss_pred HHHhcCcCc------eeeEEEECCCCcEEEccc
Q 013684 315 LTKYFDVQG------IPCLVIIGPEGKTVTKQG 341 (438)
Q Consensus 315 l~~~~~v~~------~P~~~lid~~G~i~~~~~ 341 (438)
+++.|+|.+ +||++++ ++|+.+.+..
T Consensus 94 la~~~~V~~~~~v~~~PT~ilf-~~Gk~v~r~~ 125 (152)
T cd02962 94 VAEKFRVSTSPLSKQLPTIILF-QGGKEVARRP 125 (152)
T ss_pred HHHHcCceecCCcCCCCEEEEE-ECCEEEEEEe
Confidence 777788876 9999999 7999987754
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=98.93 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=60.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+|+|+|.|+|+|||+|+.+.|.|.++++++++. +.+..|++|.. ++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~----------~~f~kVDVDev-----------------------~d 59 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM----------ASIYLVDVDKV-----------------------PV 59 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc----------eEEEEEecccc-----------------------HH
Confidence 5799999999999999999999999999999742 56777777754 77
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.+.||++++ ++|+-+.-
T Consensus 60 va~~y~I~amPtfvff-kngkh~~~ 83 (114)
T cd02986 60 YTQYFDISYIPSTIFF-FNGQHMKV 83 (114)
T ss_pred HHHhcCceeCcEEEEE-ECCcEEEE
Confidence 9999999999999999 77766544
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-12 Score=101.79 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=63.0
Q ss_pred CCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCCh
Q 013684 59 EIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL 138 (438)
Q Consensus 59 ~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~ 138 (438)
++++.+.....++++++|+||++||++|+.+.|.+.++++++++ ++.+..|+.|..
T Consensus 6 l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~---~~~~~~vd~~~~--------------------- 61 (101)
T cd03003 6 LDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG---VIRIGAVNCGDD--------------------- 61 (101)
T ss_pred cCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC---ceEEEEEeCCcc---------------------
Confidence 34444433334568999999999999999999999999999864 277777777643
Q ss_pred HHHHHHhhhcCcCccceEEEecCCCCCCCcc
Q 013684 139 ETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 139 ~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
..+++.|+|.++||++++. +|...
T Consensus 62 ---~~~~~~~~v~~~Pt~~~~~----~g~~~ 85 (101)
T cd03003 62 ---RMLCRSQGVNSYPSLYVFP----SGMNP 85 (101)
T ss_pred ---HHHHHHcCCCccCEEEEEc----CCCCc
Confidence 5788999999999999995 67644
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-11 Score=104.26 Aligned_cols=71 Identities=28% Similarity=0.550 Sum_probs=61.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++++++.+ ++.++.|+++.. ..
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~----------~v~~~~vd~~~~-----------------------~~ 97 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG----------KVRFVKVNTEAE-----------------------RE 97 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC----------CeEEEEEeCCCC-----------------------HH
Confidence 478999999999999999999999999988764 477777777644 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|+++++ ++|+++.+
T Consensus 98 l~~~~~V~~~Ptlii~-~~G~~v~~ 121 (139)
T PRK10996 98 LSARFRIRSIPTIMIF-KNGQVVDM 121 (139)
T ss_pred HHHhcCCCccCEEEEE-ECCEEEEE
Confidence 8999999999999998 68998876
|
|
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-11 Score=97.61 Aligned_cols=69 Identities=22% Similarity=0.384 Sum_probs=57.6
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
++|+ ++|.|||+||++|+.+.|.+.++++.++.. ++.+..|+++.+ .
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~---------~v~~~~vd~~~~-----------------------~ 61 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL---------GINVAKVDVTQE-----------------------P 61 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC---------CeEEEEEEccCC-----------------------H
Confidence 3455 689999999999999999999999876533 577888877654 5
Q ss_pred HHHHhcCcCceeeEEEECCCCcE
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i 336 (438)
.+++.|+|.++||++++ ++|++
T Consensus 62 ~~~~~~~i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 62 GLSGRFFVTALPTIYHA-KDGVF 83 (101)
T ss_pred hHHHHcCCcccCEEEEe-CCCCE
Confidence 67899999999999998 88986
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.7e-12 Score=102.42 Aligned_cols=95 Identities=27% Similarity=0.493 Sum_probs=65.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.||+++++||++|||+|+.+.+.+.+..+ +.... ..++.++.++++.+.+....+....+. +.......+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 73 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDND-VARYL------KDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKE 73 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHH-HHCEE------HCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH-HHHHh------hcCeEEEEEecCCcccccccccccccc---hhhhHHHHH
Confidence 58999999999999999999998886544 22110 125789999988766555555543331 122234568
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+.+.|||.++||++++|++|+++.+
T Consensus 74 l~~~~~v~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 74 LAQRYGVNGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp HHHHTT--SSSEEEECTTTSCEEEE
T ss_pred HHHHcCCCccCEEEEEcCCCCEEEE
Confidence 9999999999999999999998875
|
... |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=102.07 Aligned_cols=74 Identities=20% Similarity=0.356 Sum_probs=61.8
Q ss_pred ccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhh
Q 013684 68 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 147 (438)
Q Consensus 68 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 147 (438)
...|++++|+|||+||++|+.+.|.+.++++++.+.+ +.++.|+.|.. ..+++.
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d~~------------------------~~l~~~ 74 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAGHE------------------------RRLARK 74 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEecccc------------------------HHHHHH
Confidence 3468999999999999999999999999999997643 77777766633 577899
Q ss_pred cCcCccceEEEecCCCCCCCcccc
Q 013684 148 FDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 148 ~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|+|.++|+++++. +|+++.+
T Consensus 75 ~~V~~~Pt~~i~~----~g~~~~~ 94 (111)
T cd02963 75 LGAHSVPAIVGII----NGQVTFY 94 (111)
T ss_pred cCCccCCEEEEEE----CCEEEEE
Confidence 9999999999996 7776544
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-11 Score=99.88 Aligned_cols=72 Identities=18% Similarity=0.355 Sum_probs=60.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|.||++||++|+.+.|.+.++.+++.+ .+.++.|+++.. ..
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~ 64 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG----------KVKVGSVDCQKY-----------------------ES 64 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CcEEEEEECCch-----------------------HH
Confidence 357999999999999999999999999999864 377888887754 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|+++||++++..+|+.+.+
T Consensus 65 ~~~~~~i~~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 65 LCQQANIRAYPTIRLYPGNASKYHS 89 (104)
T ss_pred HHHHcCCCcccEEEEEcCCCCCceE
Confidence 8999999999999999665466554
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-11 Score=101.19 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=60.5
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++|+|.|||+||++|+.+.|.|.++++++++. +.|+-|++|.. ++
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~----------~~~~kVDVDe~-----------------------~d 68 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF----------AVIYLVDITEV-----------------------PD 68 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc----------eEEEEEECCCC-----------------------HH
Confidence 4679999999999999999999999999998754 67788888865 78
Q ss_pred HHHhcCcCceeeEE-EECCCCc-EEEc
Q 013684 315 LTKYFDVQGIPCLV-IIGPEGK-TVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~-lid~~G~-i~~~ 339 (438)
++++|+|.+.|+++ ++ ++|+ .+.+
T Consensus 69 la~~y~I~~~~t~~~ff-k~g~~~vd~ 94 (142)
T PLN00410 69 FNTMYELYDPCTVMFFF-RNKHIMIDL 94 (142)
T ss_pred HHHHcCccCCCcEEEEE-ECCeEEEEE
Confidence 99999999887766 66 8887 6655
|
|
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-11 Score=98.26 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+|||+||++|+++.|.+.++++++++.. + ...++.++.|++|.. .+
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~---~-~~~~~~~~~vd~d~~-----------------------~~ 69 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEF---P-DAGKVVWGKVDCDKE-----------------------SD 69 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhcc---C-CCCcEEEEEEECCCC-----------------------HH
Confidence 35789999999999999999999999999886430 0 001467777777754 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEE
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
+++.|+|.++||++++ ++|++.
T Consensus 70 l~~~~~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 70 IADRYRINKYPTLKLF-RNGMMM 91 (108)
T ss_pred HHHhCCCCcCCEEEEE-eCCcCc
Confidence 8999999999999999 788843
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-11 Score=97.81 Aligned_cols=71 Identities=17% Similarity=0.302 Sum_probs=59.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+|++++|+||++||++|+.+.|.+.++++.+.+ .+.++.|+.|.. ..+++.|+
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~------------------------~~l~~~~~ 63 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG---QFVLAKVNCDAQ------------------------PQIAQQFG 63 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC---cEEEEEEeccCC------------------------HHHHHHcC
Confidence 478999999999999999999999999999854 266777766543 67889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|++++++ +|+.+.+
T Consensus 64 i~~~Pt~~~~~----~g~~~~~ 81 (96)
T cd02956 64 VQALPTVYLFA----AGQPVDG 81 (96)
T ss_pred CCCCCEEEEEe----CCEEeee
Confidence 99999999997 7766543
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-11 Score=99.79 Aligned_cols=73 Identities=15% Similarity=0.372 Sum_probs=60.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+||+++|.||++||++|+++.|.+.++++.+++. ++.++.|++|.+. ..
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~---------~~~~~~vd~d~~~----------------------~~ 68 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS---------NVKVAKFNADGEQ----------------------RE 68 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC---------CeEEEEEECCccc----------------------hh
Confidence 4789999999999999999999999999999754 6888888887631 34
Q ss_pred HHH-hcCcCceeeEEEECCCCcEEE
Q 013684 315 LTK-YFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 315 l~~-~~~v~~~P~~~lid~~G~i~~ 338 (438)
+++ .|+++++||+++++++++...
T Consensus 69 ~~~~~~~v~~~Pti~~f~~~~~~~~ 93 (109)
T cd02993 69 FAKEELQLKSFPTILFFPKNSRQPI 93 (109)
T ss_pred hHHhhcCCCcCCEEEEEcCCCCCce
Confidence 554 599999999999987765443
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-11 Score=107.67 Aligned_cols=120 Identities=19% Similarity=0.353 Sum_probs=94.6
Q ss_pred ccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCc-cchhhHHHHHHHHHHHhcCCCCEEEEEEecCC---
Q 013684 41 SLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE--- 116 (438)
Q Consensus 41 ~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~--- 116 (438)
...|+|+ +.|.+|+.+++++++||+++|+|..+.|| .|...+..|+++.+++.+.+.++++++||+|.
T Consensus 30 ~~~~~f~--------L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~D 101 (174)
T PF02630_consen 30 RIVPDFT--------LTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERD 101 (174)
T ss_dssp CSSST-E--------EEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC
T ss_pred ccCCCcE--------EEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCC
Confidence 3446677 99999999999999999999999999998 99999999999999999877789999999983
Q ss_pred CHHHHHHhHhcCC--cccccCCChHHHHHHhhhcCcC----------------ccceEEEecCCCCCCCccccc
Q 013684 117 DLNAFNNYRACMP--WLAVPYSDLETKKALNRKFDIE----------------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 117 ~~~~~~~~~~~~~--~~~~~~~d~~~~~~l~~~~~v~----------------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+++.+++|.+.++ |..+.+ +.....++.+.|++. +...++|||+ +|+++...
T Consensus 102 Tp~~L~~Y~~~~~~~~~~ltg-~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp---~G~i~~~y 171 (174)
T PF02630_consen 102 TPEVLKKYAKKFGPDFIGLTG-SREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDP---DGRIRAIY 171 (174)
T ss_dssp -HHHHHHHHHCHTTTCEEEEE-EHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-T---TSEEEEEE
T ss_pred CHHHHHHHHHhcCCCcceeEe-CHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcC---CCcEEEEE
Confidence 5778888888653 554444 344446777777653 4568899999 99987654
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-11 Score=98.81 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=61.7
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++.+++. ++.++-|+++.. ..
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-----------~i~f~~Vd~~~~-----------------------~~ 66 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-----------ETKFIKVNAEKA-----------------------PF 66 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-----------CCEEEEEEcccC-----------------------HH
Confidence 35789999999999999999999999998875 467888887755 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.|+|.++||++++ ++|+.+.+.
T Consensus 67 l~~~~~v~~vPt~l~f-k~G~~v~~~ 91 (113)
T cd02989 67 LVEKLNIKVLPTVILF-KNGKTVDRI 91 (113)
T ss_pred HHHHCCCccCCEEEEE-ECCEEEEEE
Confidence 8999999999999999 899988763
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-11 Score=97.37 Aligned_cols=71 Identities=25% Similarity=0.523 Sum_probs=59.3
Q ss_pred EEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 013684 238 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 317 (438)
Q Consensus 238 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 317 (438)
.++|+||++||++|+.+.|.+.++++++++. ..++.++.|+++.. ..+++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~~~~~~vd~~~~-----------------------~~~~~ 67 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNE-------NPSVKIAKVDCTQH-----------------------RELCS 67 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhcc-------CCcEEEEEEECCCC-----------------------hhhHh
Confidence 4999999999999999999999999999752 13577887777644 56789
Q ss_pred hcCcCceeeEEEECCCCcEEEc
Q 013684 318 YFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 318 ~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.|+|.++|+++++ ++|+.+.+
T Consensus 68 ~~~v~~~Pt~~~~-~~g~~~~~ 88 (102)
T cd03005 68 EFQVRGYPTLLLF-KDGEKVDK 88 (102)
T ss_pred hcCCCcCCEEEEE-eCCCeeeE
Confidence 9999999999999 68876654
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-11 Score=106.68 Aligned_cols=118 Identities=13% Similarity=0.186 Sum_probs=91.8
Q ss_pred hhccchhHHHHHhhcccccCCC---CCEEeccc-cCCCEEEEEEe-ccCCccchhh-HHHHHHHHHHHhcCCCCE-EEEE
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEI---GEEVKVSD-LEGKVTALYFS-ANWYPPCGNF-TGVLVDVYEELRNNGSDF-EVVF 111 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~---g~~v~l~~-~~gk~vll~F~-a~wC~~C~~~-~p~l~~l~~~~~~~~~~~-~iv~ 111 (438)
+|+.+|+|+ +.+.+ |+.++|++ ++||+++|+|| +.|||.|..+ ++.|++.+++|.+.| . +|++
T Consensus 1 vG~~aPdF~--------l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~ 70 (155)
T cd03013 1 VGDKLPNVT--------LFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVIC 70 (155)
T ss_pred CCCcCCCeE--------eeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEE
Confidence 588999999 78875 99999999 58876655555 9999999999 999999999999876 8 6999
Q ss_pred EecCCCHHHHHHhHhcCCc-cccc-CCChHHHHHHhhhcCcC-----------ccceEEEecCCCCCCCcccccc
Q 013684 112 VSSDEDLNAFNNYRACMPW-LAVP-YSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 112 vs~D~~~~~~~~~~~~~~~-~~~~-~~d~~~~~~l~~~~~v~-----------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
||.|. ....+++.++++. ..++ .+|.+ .++++.||+. ..+.+++|| +|+|++...
T Consensus 71 iS~D~-~~~~~~~~~~~~~~~~f~lLsD~~--~~~~~~ygv~~~~~~~~~~~~~~R~~fiId----~g~I~~~~~ 138 (155)
T cd03013 71 VSVND-PFVMKAWGKALGAKDKIRFLADGN--GEFTKALGLTLDLSAAGGGIRSKRYALIVD----DGKVKYLFV 138 (155)
T ss_pred EECCC-HHHHHHHHHhhCCCCcEEEEECCC--HHHHHHcCCCccccccCCcceeeeEEEEEC----CCEEEEEEE
Confidence 99994 4557777777664 1233 33544 7999999983 146778887 788876654
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.3e-11 Score=95.80 Aligned_cols=70 Identities=19% Similarity=0.415 Sum_probs=58.8
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|+.+.|.|.++.+++.. ++.++.|+.+.. .++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~----------~i~~~~vd~~~~-----------------------~~~ 60 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP----------SVLFLSIEAEEL-----------------------PEI 60 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC----------ceEEEEEccccC-----------------------HHH
Confidence 68999999999999999999999999988732 466666655432 578
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++.|++.++||++++ ++|+++.+
T Consensus 61 ~~~~~i~~~Pt~~~~-~~g~~~~~ 83 (97)
T cd02984 61 SEKFEITAVPTFVFF-RNGTIVDR 83 (97)
T ss_pred HHhcCCccccEEEEE-ECCEEEEE
Confidence 899999999999999 68998876
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.9e-11 Score=95.03 Aligned_cols=71 Identities=34% Similarity=0.695 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.|.++.+++++ ++.++.|+++.. ..
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~----------~v~~~~vd~~~~-----------------------~~ 62 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD----------NVKFAKVDCDEN-----------------------KE 62 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT----------TSEEEEEETTTS-----------------------HH
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc----------ccccchhhhhcc-----------------------ch
Confidence 368999999999999999999999999999874 477777777644 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|+++++ ++|+...+
T Consensus 63 l~~~~~v~~~Pt~~~~-~~g~~~~~ 86 (103)
T PF00085_consen 63 LCKKYGVKSVPTIIFF-KNGKEVKR 86 (103)
T ss_dssp HHHHTTCSSSSEEEEE-ETTEEEEE
T ss_pred hhhccCCCCCCEEEEE-ECCcEEEE
Confidence 8999999999999999 77777654
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-11 Score=97.69 Aligned_cols=69 Identities=28% Similarity=0.471 Sum_probs=59.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.|++++|.||++||++|+.+.|.+.++++++.+ .+.++.|+++.+. ...
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~----------~~~~~~v~~~~~~---------------------~~~ 65 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG----------LVQVAAVDCDEDK---------------------NKP 65 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC----------CceEEEEecCccc---------------------cHH
Confidence 478899999999999999999999999998864 3788888887632 267
Q ss_pred HHHhcCcCceeeEEEECCCC
Q 013684 315 LTKYFDVQGIPCLVIIGPEG 334 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G 334 (438)
+++.|+|.++|+++++++++
T Consensus 66 ~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 66 LCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred HHHHcCCCcCCEEEEEeCCC
Confidence 89999999999999997776
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.9e-11 Score=94.48 Aligned_cols=71 Identities=17% Similarity=0.396 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++++||++||++|+.+.|.+.++.+++.+ ++.++.|+.|.+ .+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~----------~v~~~~id~d~~-----------------------~~ 58 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG----------AVHFVEIDIDED-----------------------QE 58 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC----------ceEEEEEECCCC-----------------------HH
Confidence 468999999999999999999999999988864 477888887654 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+.+.|+|.++|+++++ ++|+++.+
T Consensus 59 l~~~~~v~~vPt~~i~-~~g~~v~~ 82 (97)
T cd02949 59 IAEAAGIMGTPTVQFF-KDKELVKE 82 (97)
T ss_pred HHHHCCCeeccEEEEE-ECCeEEEE
Confidence 8899999999999999 58988866
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-11 Score=103.53 Aligned_cols=93 Identities=19% Similarity=0.314 Sum_probs=69.2
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|+||++||++|+.+.|.+.++++++++. ++.++.|++|.. .++++.|+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~--~v~f~~VDvd~~------------------------~~la~~~~ 99 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN--NLKFGKIDIGRF------------------------PNVAEKFR 99 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC--CeEEEEEECCCC------------------------HHHHHHcC
Confidence 4679999999999999999999999999998654 388888887755 56677788
Q ss_pred cCc------cceEEEecCCCCCCCcccccchhHHhhhCCCCccCChhHH
Q 013684 150 IEG------IPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKL 192 (438)
Q Consensus 150 v~~------~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l 192 (438)
|.. +||++++. +|+.+.+...-.-...+...+.++.+.+
T Consensus 100 V~~~~~v~~~PT~ilf~----~Gk~v~r~~G~~~~~~~~~~~~~~~~~~ 144 (152)
T cd02962 100 VSTSPLSKQLPTIILFQ----GGKEVARRPYYNDSKGRAVPFTFSKENV 144 (152)
T ss_pred ceecCCcCCCCEEEEEE----CCEEEEEEeccccCccccccccccHHHH
Confidence 877 99999997 8887766554333333333344554433
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.5e-11 Score=98.37 Aligned_cols=68 Identities=10% Similarity=0.144 Sum_probs=56.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh-hhc
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN-RKF 148 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~-~~~ 148 (438)
.+++++|.|||+||++|+.+.|.+.++++++++. +.++.|+.|.. ..++ ++|
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~------------------------~~l~~~~~ 80 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWP------------------------QGKCRKQK 80 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC------------------------hHHHHHhc
Confidence 5689999999999999999999999999999642 67777766533 4566 589
Q ss_pred CcCccceEEEecCCCCCCCc
Q 013684 149 DIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 149 ~v~~~P~~~lvd~~~~~G~v 168 (438)
+|.++||+.++. +|+.
T Consensus 81 ~I~~~PTl~lf~----~g~~ 96 (113)
T cd03006 81 HFFYFPVIHLYY----RSRG 96 (113)
T ss_pred CCcccCEEEEEE----CCcc
Confidence 999999999995 6653
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-11 Score=98.17 Aligned_cols=70 Identities=20% Similarity=0.423 Sum_probs=59.6
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|.++|+|+|+|||||+.+.|.+.+++.++. ++.++.|++|+ . .++++.|+
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~----~v~Flkvdvde--~----------------------~~~~~~~~ 71 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP----DVVFLKVDVDE--L----------------------EEVAKEFN 71 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCC----CCEEEEEeccc--C----------------------HhHHHhcC
Confidence 37999999999999999999999999999984 36777777775 2 78899999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|..+||++++. +|+.+.+
T Consensus 72 V~~~PTf~f~k----~g~~~~~ 89 (106)
T KOG0907|consen 72 VKAMPTFVFYK----GGEEVDE 89 (106)
T ss_pred ceEeeEEEEEE----CCEEEEE
Confidence 99999999997 6655543
|
|
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.1e-11 Score=97.59 Aligned_cols=72 Identities=8% Similarity=0.155 Sum_probs=59.9
Q ss_pred CCEEEEEEecCCChh--hh--hhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 236 GKTVGLYFSARWCIP--CE--KFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 236 gk~vll~F~a~wC~~--C~--~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
..+++++||+.||++ |+ .+.|.+.+++.++-.. .++.|+.|++|.+
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~--------~~v~~~kVD~d~~---------------------- 76 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED--------KGIGFGLVDSKKD---------------------- 76 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc--------CCCEEEEEeCCCC----------------------
Confidence 358999999999987 99 7888899888887321 2588888888865
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+++++|||.++||++++ ++|+++..
T Consensus 77 -~~La~~~~I~~iPTl~lf-k~G~~v~~ 102 (120)
T cd03065 77 -AKVAKKLGLDEEDSIYVF-KDDEVIEY 102 (120)
T ss_pred -HHHHHHcCCccccEEEEE-ECCEEEEe
Confidence 789999999999999999 79998763
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.6e-11 Score=96.83 Aligned_cols=70 Identities=20% Similarity=0.276 Sum_probs=59.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+|+|.|+|+|||+|+.+.|.|.++++++++. +.++.|++|+. .++++.|+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev------------------------~dva~~y~ 65 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKV------------------------PVYTQYFD 65 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEecccc------------------------HHHHHhcC
Confidence 6899999999999999999999999999999432 67777777644 78899999
Q ss_pred cCccceEEEecCCCCCCCccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~ 170 (438)
|.+.|+++++. +|+-+.
T Consensus 66 I~amPtfvffk----ngkh~~ 82 (114)
T cd02986 66 ISYIPSTIFFF----NGQHMK 82 (114)
T ss_pred ceeCcEEEEEE----CCcEEE
Confidence 99999999888 565543
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=95.79 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=59.4
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|.||++||++|+.+.|.+.++++++++. .+.+.+..|+++.+. ...+
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~-------~~~v~~~~vd~~~~~---------------------~~~~ 70 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW-------RPVVRVAAVDCADEE---------------------NVAL 70 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc-------CCceEEEEEeccchh---------------------hHHH
Confidence 479999999999999999999999999998753 224667777665332 3678
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++.|+|+++|+++++ ++|+....
T Consensus 71 ~~~~~i~~~Pt~~lf-~~~~~~~~ 93 (114)
T cd02992 71 CRDFGVTGYPTLRYF-PPFSKEAT 93 (114)
T ss_pred HHhCCCCCCCEEEEE-CCCCccCC
Confidence 999999999999999 55554443
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-11 Score=94.63 Aligned_cols=71 Identities=25% Similarity=0.488 Sum_probs=59.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|.||++||++|+.+.+.+.++++.++.. .++.++.++++.. ..
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~~-----------------------~~ 60 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD--------PDIVLAKVDATAE-----------------------KD 60 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC--------CceEEEEEEccch-----------------------HH
Confidence 6889999999999999999999999999888753 2466666666543 67
Q ss_pred HHHhcCcCceeeEEEECCCCcE
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i 336 (438)
+++.|+|.++|+++++++++.+
T Consensus 61 ~~~~~~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 61 LASRFGVSGFPTIKFFPKGKKP 82 (102)
T ss_pred HHHhCCCCcCCEEEEecCCCcc
Confidence 8899999999999999877763
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=99.19 E-value=6e-11 Score=98.03 Aligned_cols=69 Identities=19% Similarity=0.345 Sum_probs=58.2
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|+.+.|.+.++++++. ++.++.|+++. . .+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-----------~v~f~~vd~~~-----------------------~-~l 68 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP-----------ETKFVKINAEK-----------------------A-FL 68 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-----------CcEEEEEEchh-----------------------h-HH
Confidence 5799999999999999999999999998875 35666666542 2 67
Q ss_pred HHhcCcCceeeEEEECCCCcEEEcc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
++.|+|.++||++++ ++|+.+.+.
T Consensus 69 ~~~~~i~~~Pt~~~f-~~G~~v~~~ 92 (113)
T cd02957 69 VNYLDIKVLPTLLVY-KNGELIDNI 92 (113)
T ss_pred HHhcCCCcCCEEEEE-ECCEEEEEE
Confidence 899999999999999 899998764
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.5e-11 Score=96.05 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=63.7
Q ss_pred CCCEEEEEEecCC--ChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 235 VGKTVGLYFSARW--CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 235 ~gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
.|.+++|.||++| ||+|..+.|.|.++.++|.+. +.++.|++|.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~----------v~f~kVdid~~----------------------- 72 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR----------FRAAVVGRADE----------------------- 72 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc----------EEEEEEECCCC-----------------------
Confidence 4678999999997 999999999999999999754 67888888765
Q ss_pred HHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 313 KELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 313 ~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+++..|+|.++||++++ ++|+++.+.
T Consensus 73 ~~la~~f~V~sIPTli~f-kdGk~v~~~ 99 (111)
T cd02965 73 QALAARFGVLRTPALLFF-RDGRYVGVL 99 (111)
T ss_pred HHHHHHcCCCcCCEEEEE-ECCEEEEEE
Confidence 689999999999999999 899999873
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.6e-11 Score=95.43 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=58.6
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|.|||+||++|+.+.|.+.++++++.+ .+.++.|+.|.. ..+++.|+
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~ 70 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG---KVKVGSVDCQKY------------------------ESLCQQAN 70 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEECCch------------------------HHHHHHcC
Confidence 367999999999999999999999999999843 377777765532 67889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|+++++.. +|+...+
T Consensus 71 i~~~Pt~~~~~~---g~~~~~~ 89 (104)
T cd03004 71 IRAYPTIRLYPG---NASKYHS 89 (104)
T ss_pred CCcccEEEEEcC---CCCCceE
Confidence 999999999986 5354433
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-10 Score=95.15 Aligned_cols=67 Identities=22% Similarity=0.423 Sum_probs=55.6
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|+||++||++|+.+.|.|.++++++++.+.++.+..++.+.. ..+++.|+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~------------------------~~~~~~~~ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY------------------------SSIASEFG 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC------------------------HhHHhhcC
Confidence 467999999999999999999999999999976553466665554422 56788999
Q ss_pred cCccceEEEec
Q 013684 150 IEGIPCLVVLQ 160 (438)
Q Consensus 150 v~~~P~~~lvd 160 (438)
|.++|++++++
T Consensus 70 I~~~Pt~~l~~ 80 (104)
T cd03000 70 VRGYPTIKLLK 80 (104)
T ss_pred CccccEEEEEc
Confidence 99999999996
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=93.31 Aligned_cols=71 Identities=21% Similarity=0.401 Sum_probs=59.5
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++++++. ++.++.|+.+.. ..
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-----------~~~~~~vd~~~~-----------------------~~ 62 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-----------KMVFVKVDVDEL-----------------------SE 62 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-----------CcEEEEEECcch-----------------------HH
Confidence 36799999999999999999999999888654 466777766533 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.|++.++|+++++ ++|+++.+.
T Consensus 63 ~~~~~~v~~~Pt~~~~-~~g~~~~~~ 87 (98)
T PTZ00051 63 VAEKENITSMPTFKVF-KNGSVVDTL 87 (98)
T ss_pred HHHHCCCceeeEEEEE-eCCeEEEEE
Confidence 8999999999998888 899998763
|
|
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-10 Score=102.61 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=50.0
Q ss_pred CEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC
Q 013684 72 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 151 (438)
Q Consensus 72 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 151 (438)
..++++|||+||++|+.+.|.|.++.+++. ++.++.|+.| |+|.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~----~~~F~~V~~d--------------------------------~~V~ 61 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP----SLEFYVVNLA--------------------------------DANN 61 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC----CcEEEEEccc--------------------------------cCcc
Confidence 467999999999999999999999999983 3555555221 8999
Q ss_pred ccceEEEecCCCCCCCccccc
Q 013684 152 GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 152 ~~P~~~lvd~~~~~G~v~~~~ 172 (438)
++|+++++. +|+.+.+-
T Consensus 62 ~vPtfv~~~----~g~~i~r~ 78 (204)
T PTZ00062 62 EYGVFEFYQ----NSQLINSL 78 (204)
T ss_pred cceEEEEEE----CCEEEeee
Confidence 999999997 88877663
|
|
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.6e-11 Score=99.24 Aligned_cols=87 Identities=24% Similarity=0.401 Sum_probs=64.5
Q ss_pred CC-CEEEEEEeccCCccchhhHHHHH---HHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 70 EG-KVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 70 ~g-k~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+| |+++|+||++||++|+.+.|.+. ++.+.+++ ++.++.|++|.+.... .+ .. .......++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~-~~---------~~-~~~~~~~l~ 77 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVT-DF---------DG-EALSEKELA 77 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceee-cc---------CC-CCccHHHHH
Confidence 57 89999999999999999999885 56666653 3888999888654311 11 00 001227889
Q ss_pred hhcCcCccceEEEecCCCCC-CCcccccc
Q 013684 146 RKFDIEGIPCLVVLQPYDDK-DDATLHDG 173 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~~~~~-G~v~~~~~ 173 (438)
..|+|.++|+++++++ + |+++.+..
T Consensus 78 ~~~~v~~~Pt~~~~~~---~gg~~~~~~~ 103 (125)
T cd02951 78 RKYRVRFTPTVIFLDP---EGGKEIARLP 103 (125)
T ss_pred HHcCCccccEEEEEcC---CCCceeEEec
Confidence 9999999999999998 8 78776543
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-10 Score=101.93 Aligned_cols=115 Identities=20% Similarity=0.401 Sum_probs=94.0
Q ss_pred CCcc-CCCCCceeeccccCCCEEEEEEecCCCh-hhhhhhHHHHHHHHHHH-hhhhhcCCCCCCEEEEEEecCCC---HH
Q 013684 218 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIK-QNLVEKGDALEDFEVVFVSTDRD---QT 291 (438)
Q Consensus 218 ~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~-~~~~~~~~~~~~~~vv~is~d~~---~~ 291 (438)
+|.+ +.+|+ .+.+..++||+++|+|..+.|| .|..++..|..+.+++. .. ..++++++|++|.+ .+
T Consensus 49 ~f~l~d~~G~-~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~-------~~~v~vv~itvDPerDtp~ 120 (207)
T COG1999 49 DFELTDQDGK-PFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGE-------GDDVQVVFITVDPERDTPE 120 (207)
T ss_pred ceeeecCCCC-EeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhcccc-------CCCEEEEEEEECCCCCCHH
Confidence 6999 99999 9999999999999999999999 69999999999999988 43 56899999999853 56
Q ss_pred HHHHHHh-cCC--CcccccCCchhHHHHHhcCcCc---------------eeeEEEECCCCcEEEcc
Q 013684 292 SFESYFG-TMP--WLALPFGDPTIKELTKYFDVQG---------------IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 292 ~~~~~~~-~~~--~~~~p~~~d~~~~l~~~~~v~~---------------~P~~~lid~~G~i~~~~ 340 (438)
.+++|.. ... |..+.-..+...+++++|+|.. ...++++|++|+++...
T Consensus 121 ~lk~Y~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~ 187 (207)
T COG1999 121 VLKKYAELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTY 187 (207)
T ss_pred HHHHHhcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEe
Confidence 6777877 211 4444444566788888888752 33679999999999874
|
|
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-10 Score=91.21 Aligned_cols=70 Identities=26% Similarity=0.566 Sum_probs=60.5
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|+.+.+.+.++.+++.+ ++.++.|+++.+ ..+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~ 60 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG----------KVKFVKLNVDEN-----------------------PDI 60 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC----------CeEEEEEECCCC-----------------------HHH
Confidence 56899999999999999999999999988764 478888887754 567
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++.|+|.++|+++++ ++|+++.+
T Consensus 61 ~~~~~v~~~P~~~~~-~~g~~~~~ 83 (101)
T TIGR01068 61 AAKYGIRSIPTLLLF-KNGKEVDR 83 (101)
T ss_pred HHHcCCCcCCEEEEE-eCCcEeee
Confidence 889999999999999 78887765
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=105.40 Aligned_cols=70 Identities=26% Similarity=0.474 Sum_probs=58.9
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|+.+.|.+.++++++++. +.+..|+++.+ ..+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~----------v~~~~VD~~~~-----------------------~~l 98 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ----------VNVADLDATRA-----------------------LNL 98 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC----------eEEEEecCccc-----------------------HHH
Confidence 578999999999999999999999999998743 66666665533 578
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++.|+|.++||+++++ +|+++..
T Consensus 99 ~~~~~I~~~PTl~~f~-~G~~v~~ 121 (224)
T PTZ00443 99 AKRFAIKGYPTLLLFD-KGKMYQY 121 (224)
T ss_pred HHHcCCCcCCEEEEEE-CCEEEEe
Confidence 9999999999999995 7887755
|
|
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.7e-11 Score=95.88 Aligned_cols=67 Identities=33% Similarity=0.516 Sum_probs=57.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.|++++|+||++||++|+.+.|.+.++++++.+ .+.++.|+.|.+.. ..+++.|+
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~v~~~~~~~----------------------~~~~~~~~ 71 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG---LVQVAAVDCDEDKN----------------------KPLCGKYG 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC---CceEEEEecCcccc----------------------HHHHHHcC
Confidence 478899999999999999999999999999864 37788887775322 67889999
Q ss_pred cCccceEEEecC
Q 013684 150 IEGIPCLVVLQP 161 (438)
Q Consensus 150 v~~~P~~~lvd~ 161 (438)
|.++|+++++++
T Consensus 72 i~~~Pt~~~~~~ 83 (109)
T cd03002 72 VQGFPTLKVFRP 83 (109)
T ss_pred CCcCCEEEEEeC
Confidence 999999999997
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-10 Score=92.98 Aligned_cols=75 Identities=25% Similarity=0.462 Sum_probs=60.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|+||++||++|+++.|.+.++.+.+++. ..+.++.|+++.+. ...
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~~~---------------------~~~ 66 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED--------GKGVLAAVDCTKPE---------------------HDA 66 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC--------CceEEEEEECCCCc---------------------cHH
Confidence 4678999999999999999999999999998743 24666667666421 267
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|+++++ ++|+++.+
T Consensus 67 ~~~~~~i~~~Pt~~~~-~~g~~~~~ 90 (104)
T cd02997 67 LKEEYNVKGFPTFKYF-ENGKFVEK 90 (104)
T ss_pred HHHhCCCccccEEEEE-eCCCeeEE
Confidence 8899999999999888 67887654
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.15 E-value=9e-11 Score=94.78 Aligned_cols=69 Identities=19% Similarity=0.328 Sum_probs=55.6
Q ss_pred cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhc
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 148 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 148 (438)
++|+ ++|+|||+||++|+.+.|.|.++++.++.. ++.+..|+.+.. ..++++|
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~~~~------------------------~~~~~~~ 67 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL--GINVAKVDVTQE------------------------PGLSGRF 67 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC--CeEEEEEEccCC------------------------HhHHHHc
Confidence 3565 689999999999999999999999987543 377777765533 5678899
Q ss_pred CcCccceEEEecCCCCCCCc
Q 013684 149 DIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 149 ~v~~~P~~~lvd~~~~~G~v 168 (438)
+|.++|+++++ + +|++
T Consensus 68 ~i~~~Pt~~~~-~---~g~~ 83 (101)
T cd02994 68 FVTALPTIYHA-K---DGVF 83 (101)
T ss_pred CCcccCEEEEe-C---CCCE
Confidence 99999999998 4 7764
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.5e-11 Score=94.92 Aligned_cols=69 Identities=16% Similarity=0.405 Sum_probs=56.0
Q ss_pred EEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCc
Q 013684 73 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 152 (438)
Q Consensus 73 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 152 (438)
+++|+||++||++|+.+.|.|.+++++++....++.++.|+.+.. ..+++.|+|.+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~------------------------~~~~~~~~v~~ 73 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH------------------------RELCSEFQVRG 73 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC------------------------hhhHhhcCCCc
Confidence 499999999999999999999999999976323477776655432 57788999999
Q ss_pred cceEEEecCCCCCCCcc
Q 013684 153 IPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 153 ~P~~~lvd~~~~~G~v~ 169 (438)
+|+++++. +|..+
T Consensus 74 ~Pt~~~~~----~g~~~ 86 (102)
T cd03005 74 YPTLLLFK----DGEKV 86 (102)
T ss_pred CCEEEEEe----CCCee
Confidence 99999995 66654
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-10 Score=94.41 Aligned_cols=67 Identities=15% Similarity=0.419 Sum_probs=56.1
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh-hc
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR-KF 148 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~ 148 (438)
+||+++|.||++||++|+.+.|.|.++++.+++. ++.++.|+.|.+. ..++. .|
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~--~~~~~~vd~d~~~-----------------------~~~~~~~~ 74 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS--NVKVAKFNADGEQ-----------------------REFAKEEL 74 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECCccc-----------------------hhhHHhhc
Confidence 4789999999999999999999999999999854 3888888777421 34454 59
Q ss_pred CcCccceEEEecC
Q 013684 149 DIEGIPCLVVLQP 161 (438)
Q Consensus 149 ~v~~~P~~~lvd~ 161 (438)
++..+|+++++++
T Consensus 75 ~v~~~Pti~~f~~ 87 (109)
T cd02993 75 QLKSFPTILFFPK 87 (109)
T ss_pred CCCcCCEEEEEcC
Confidence 9999999999986
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-10 Score=93.15 Aligned_cols=71 Identities=11% Similarity=0.249 Sum_probs=56.9
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCC---CCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNG---SDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~---~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
.+++++|+|||+||++|+.+.|.+.++++.+++.. .++.++.|+.|.. ..+++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~------------------------~~l~~ 72 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE------------------------SDIAD 72 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC------------------------HHHHH
Confidence 46899999999999999999999999999886531 1355555555533 67899
Q ss_pred hcCcCccceEEEecCCCCCCCc
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v 168 (438)
+|+|.++|+++++. +|.+
T Consensus 73 ~~~v~~~Ptl~~~~----~g~~ 90 (108)
T cd02996 73 RYRINKYPTLKLFR----NGMM 90 (108)
T ss_pred hCCCCcCCEEEEEe----CCcC
Confidence 99999999999995 6763
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-09 Score=110.06 Aligned_cols=179 Identities=16% Similarity=0.212 Sum_probs=106.0
Q ss_pred CCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC--ccceEEEe
Q 013684 82 WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE--GIPCLVVL 159 (438)
Q Consensus 82 wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~--~~P~~~lv 159 (438)
...+|......|.++++++++. .+.++.+ | ......+++.+++. .+|.++++
T Consensus 246 ~~~~~~~~~~~~~~~a~~~~~~--~i~f~~~--d----------------------~~~~~~~~~~~~~~~~~~P~~vi~ 299 (462)
T TIGR01130 246 SLDPFEELRNRFLEAAKKFRGK--FVNFAVA--D----------------------EEDFGRELEYFGLKAEKFPAVAIQ 299 (462)
T ss_pred CchHHHHHHHHHHHHHHHCCCC--eEEEEEe--c----------------------HHHhHHHHHHcCCCccCCceEEEE
Confidence 3344667777777777766431 2443333 2 22226678888887 69999999
Q ss_pred cCCCCCCCcccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCC---Ccc-CCCCCceeecc-cc
Q 013684 160 QPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRG---YLL-GHPPDEKVPVS-SL 234 (438)
Q Consensus 160 d~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~---f~l-~~~g~~~~~l~-~~ 234 (438)
+. +|...+... ....+.+.+.++.............. ..+.|. -.+ ...|. .+.-. .-
T Consensus 300 ~~---~~~~~y~~~----------~~~~~~~~i~~fi~~~~~g~~~~~~~---se~~p~~~~~~v~~l~~~-~f~~~v~~ 362 (462)
T TIGR01130 300 DL---EGNKKYPMD----------QEEFSSENLEAFVKDFLDGKLKPYLK---SEPIPEDDEGPVKVLVGK-NFDEIVLD 362 (462)
T ss_pred eC---CcccccCCC----------cCCCCHHHHHHHHHHHhcCCCCeeec---cCCCCccCCCccEEeeCc-CHHHHhcc
Confidence 98 662221110 01244455555444433222111111 111111 112 34444 33221 12
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.++.++|+||++||++|+.+.|.+.++++.+++. ..++.++.|+++.+.
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~i~~~~id~~~n~------------------------ 411 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDA-------ESDVVIAKMDATAND------------------------ 411 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcC-------CCcEEEEEEECCCCc------------------------
Confidence 4789999999999999999999999999999852 125778888776431
Q ss_pred HHHhcCcCceeeEEEECCCCc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGK 335 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~ 335 (438)
+.. |++.++|+++++.++++
T Consensus 412 ~~~-~~i~~~Pt~~~~~~~~~ 431 (462)
T TIGR01130 412 VPP-FEVEGFPTIKFVPAGKK 431 (462)
T ss_pred cCC-CCccccCEEEEEeCCCC
Confidence 223 89999999999965554
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-10 Score=94.38 Aligned_cols=80 Identities=18% Similarity=0.430 Sum_probs=57.8
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC-chhH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD-PTIK 313 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~-d~~~ 313 (438)
.|+.++|+|+++|||+|+.+.|.|.++.++. ++.|..|++|.+.. ..... +...
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~------------~~~~y~vdvd~~~~-------------~~~~~~~~~~ 76 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT------------KAPIYYIDSENNGS-------------FEMSSLNDLT 76 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc------------CCcEEEEECCCccC-------------cCcccHHHHH
Confidence 3678999999999999999999999998873 35689999885420 00000 0113
Q ss_pred HHHHhc----CcCceeeEEEECCCCcEEEcc
Q 013684 314 ELTKYF----DVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 314 ~l~~~~----~v~~~P~~~lid~~G~i~~~~ 340 (438)
++.+.| +|.++||++++ ++|+.+.+.
T Consensus 77 ~~~~~~~i~~~i~~~PT~v~~-k~Gk~v~~~ 106 (122)
T TIGR01295 77 AFRSRFGIPTSFMGTPTFVHI-TDGKQVSVR 106 (122)
T ss_pred HHHHHcCCcccCCCCCEEEEE-eCCeEEEEE
Confidence 445554 46679999999 999998873
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.1e-11 Score=111.62 Aligned_cols=87 Identities=20% Similarity=0.321 Sum_probs=68.9
Q ss_pred CEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHH
Q 013684 62 EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 141 (438)
Q Consensus 62 ~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 141 (438)
+...++++.|+++||+||++||++|+.+.|.|.++++++ | +.|++|++|.+... . ++..+.+
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g--~~Vi~VsvD~~~~~------~-----fp~~~~d-- 218 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---G--IEVLPVSVDGGPLP------G-----FPNARPD-- 218 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---C--cEEEEEeCCCCccc------c-----CCcccCC--
Confidence 346788899999999999999999999999999999987 2 88999999865431 1 2211222
Q ss_pred HHHhhhcCcCccceEEEecCCCCCCCcc
Q 013684 142 KALNRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 142 ~~l~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
..+.+.|+|.++|+++|+++ +|..+
T Consensus 219 ~~la~~~gV~~vPtl~Lv~~---~~~~v 243 (271)
T TIGR02740 219 AGQAQQLKIRTVPAVFLADP---DPNQF 243 (271)
T ss_pred HHHHHHcCCCcCCeEEEEEC---CCCEE
Confidence 46789999999999999997 66544
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-10 Score=102.03 Aligned_cols=122 Identities=22% Similarity=0.286 Sum_probs=97.3
Q ss_pred HHhhccchhHHHHHhhcccccCC-CCC---EEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEE
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKE-IGE---EVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVF 111 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~-~g~---~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~ 111 (438)
+++|..+|+|+ .... .|. +++++++.||+++|+|| +..-+.|..++..+++.|++|+++| ++|++
T Consensus 3 ~lIg~~aP~F~--------~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVig 72 (194)
T COG0450 3 SLIGKKAPDFT--------ANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIG 72 (194)
T ss_pred cccCCcCCCcE--------EEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEE
Confidence 46899999999 5555 664 89999998999999999 7888999999999999999999987 99999
Q ss_pred EecCC--CHHHHHHhHhcCC-c--ccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCccccc
Q 013684 112 VSSDE--DLNAFNNYRACMP-W--LAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 112 vs~D~--~~~~~~~~~~~~~-~--~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+|+|. +..+|.+...+.. . ..+|. -.|.+.++++.||+. +...+|+||+ +|.+...-
T Consensus 73 vS~Ds~fsH~aW~~~~~~~~gi~~i~~Pm-iaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp---~g~ir~~~ 140 (194)
T COG0450 73 VSTDSVFSHKAWKATIREAGGIGKIKFPM-IADPKGEIARAYGVLHPEEGLALRGTFIIDP---DGVIRHIL 140 (194)
T ss_pred EecCcHHHHHHHHhcHHhcCCccceecce-EEcCchhHHHHcCCcccCCCcceeEEEEECC---CCeEEEEE
Confidence 99995 5566666654332 2 33333 233348999999984 5678999999 99887553
|
|
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.8e-11 Score=117.68 Aligned_cols=133 Identities=24% Similarity=0.396 Sum_probs=87.7
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|.||++||++|+.+.|.+.++.+.+++. +.+..|.++. ...+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~----------~~~~~vd~~~-----------------------~~~~ 93 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK----------VKIGAVDCDE-----------------------HKDL 93 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCc----------eEEEEeCchh-----------------------hHHH
Confidence 568999999999999999999999999998754 4555554443 3789
Q ss_pred HHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccCCCc-ccccccc--ccc---cc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRS-EFHIGHR--HEL---NL 389 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~~~~-~~~~~~~--~~~---~~ 389 (438)
++.|+|.++||+.++.++.+++...+. ...+...+.+.+.++......... +...... +.. .-
T Consensus 94 ~~~y~i~gfPtl~~f~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 162 (383)
T KOG0191|consen 94 CEKYGIQGFPTLKVFRPGKKPIDYSGP-----------RNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSD 162 (383)
T ss_pred HHhcCCccCcEEEEEcCCCceeeccCc-----------ccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccC
Confidence 999999999999999666345544321 112333333444444333333223 3222221 111 11
Q ss_pred ccccCCCCCcccCccCCCCCcee
Q 013684 390 VSEGTGGGPFICCDCDEQGSGWA 412 (438)
Q Consensus 390 ~~~~~~~~~~~c~~C~~~~~~w~ 412 (438)
..|++...+|||.||+++.+.|.
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~ 185 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWE 185 (383)
T ss_pred cceEEEEeccccHHhhhcChHHH
Confidence 23567778999999999988884
|
|
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=91.43 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=59.2
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 308 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 308 (438)
+.-+||+|+|+|+++||++|+.+.... .++.+.+.+ ++.+|.|+.+...+..+.+.
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~----------~fv~VkvD~~~~~~~~~~~~----------- 69 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE----------NFVPIKVDREERPDVDKIYM----------- 69 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC----------CEEEEEEeCCcCcHHHHHHH-----------
Confidence 445689999999999999999987732 245555543 46666666654432221111
Q ss_pred CchhHHHHHhcCcCceeeEEEECCCCcEEEccc
Q 013684 309 DPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 341 (438)
Q Consensus 309 ~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 341 (438)
......||+.++|+++++|++|++++..+
T Consensus 70 ----~~~~~~~~~~G~Pt~vfl~~~G~~~~~~~ 98 (124)
T cd02955 70 ----NAAQAMTGQGGWPLNVFLTPDLKPFFGGT 98 (124)
T ss_pred ----HHHHHhcCCCCCCEEEEECCCCCEEeeee
Confidence 22334679999999999999999998753
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-10 Score=104.44 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=78.6
Q ss_pred CEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 013684 237 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 316 (438)
Q Consensus 237 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 316 (438)
..++++|||+||++|+.+.|.+.++.++|. ++.++-|+.|
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-----------~~~F~~V~~d----------------------------- 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP-----------SLEFYVVNLA----------------------------- 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC-----------CcEEEEEccc-----------------------------
Confidence 357999999999999999999999999885 3455555422
Q ss_pred HhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccCCCc-----cccccccccccccc
Q 013684 317 KYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRS-----EFHIGHRHELNLVS 391 (438)
Q Consensus 317 ~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~ 391 (438)
|+|.++|+++++ ++|+++.+ ..|.++ .+|...+.+.....+.. ....-..++.++
T Consensus 58 --~~V~~vPtfv~~-~~g~~i~r-------~~G~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvv-- 117 (204)
T PTZ00062 58 --DANNEYGVFEFY-QNSQLINS-------LEGCNT--------STLVSFIRGWAQKGSSEDTVEKIERLIRNHKILL-- 117 (204)
T ss_pred --cCcccceEEEEE-ECCEEEee-------eeCCCH--------HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEE--
Confidence 899999999999 89999988 334433 66777776665543322 222333466666
Q ss_pred ccCCCCC---cccCccCCCCCc
Q 013684 392 EGTGGGP---FICCDCDEQGSG 410 (438)
Q Consensus 392 ~~~~~~~---~~c~~C~~~~~~ 410 (438)
.+++. |+|+.|++....
T Consensus 118 --f~Kg~~~~p~C~~C~~~k~~ 137 (204)
T PTZ00062 118 --FMKGSKTFPFCRFSNAVVNM 137 (204)
T ss_pred --EEccCCCCCCChhHHHHHHH
Confidence 56654 578888754433
|
|
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-10 Score=91.54 Aligned_cols=77 Identities=22% Similarity=0.383 Sum_probs=59.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
+||+++|+||++||++|+.+.|.+ .++.+.+++ ++.++.|+++.+.. ....+++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~--------------------~~~~~~~ 66 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDP--------------------EITALLK 66 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCH--------------------HHHHHHH
Confidence 579999999999999999999887 577777754 38888887764321 1268889
Q ss_pred hcCcCccceEEEecCCCCCCCcccc
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
.|++.++|+++++++ .+|+.+.+
T Consensus 67 ~~~i~~~Pti~~~~~--~~g~~~~~ 89 (104)
T cd02953 67 RFGVFGPPTYLFYGP--GGEPEPLR 89 (104)
T ss_pred HcCCCCCCEEEEECC--CCCCCCcc
Confidence 999999999999984 24665543
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-10 Score=97.23 Aligned_cols=72 Identities=17% Similarity=0.283 Sum_probs=59.5
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++|+|.|||+||+||+.+.|.|.++++++++. +.|+-|++|+. ++++..|+
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~------------------------~dla~~y~ 74 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEV------------------------PDFNTMYE 74 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCC------------------------HHHHHHcC
Confidence 5789999999999999999999999999998553 67788888755 78899999
Q ss_pred cCccceEEEecCCCCCCC-cccc
Q 013684 150 IEGIPCLVVLQPYDDKDD-ATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~-v~~~ 171 (438)
|...|+++++-+ +|. .+.+
T Consensus 75 I~~~~t~~~ffk---~g~~~vd~ 94 (142)
T PLN00410 75 LYDPCTVMFFFR---NKHIMIDL 94 (142)
T ss_pred ccCCCcEEEEEE---CCeEEEEE
Confidence 998888774544 776 4444
|
|
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-10 Score=95.01 Aligned_cols=79 Identities=16% Similarity=0.330 Sum_probs=62.7
Q ss_pred CCCEEEEEEec-------CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 235 VGKTVGLYFSA-------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 235 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
+|++++|.||| +|||+|+.+.|.+.++.+++++ ++.++.|++|... +
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~----------~v~fv~Vdvd~~~----------------~ 73 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE----------DCVFIYCDVGDRP----------------Y 73 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC----------CCEEEEEEcCCcc----------------c
Confidence 57899999999 9999999999999999998863 3788888887542 1
Q ss_pred CCchhHHHHHhcCcC-ceeeEEEECCCCcEEEc
Q 013684 308 GDPTIKELTKYFDVQ-GIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~-~~P~~~lid~~G~i~~~ 339 (438)
-.+....+...|+|. ++||+++++..++++..
T Consensus 74 w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 74 WRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred ccCcchhhHhccCcccCCCEEEEEcCCceecch
Confidence 112246788999998 99999999655555543
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-10 Score=107.53 Aligned_cols=71 Identities=20% Similarity=0.406 Sum_probs=63.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+-++|+|+||++||++|+..+|.|.++..+++.+ |.+..|++|.. ..+..+||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~------------------------p~vAaqfg 94 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAE------------------------PMVAAQFG 94 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcc------------------------hhHHHHhC
Confidence 4479999999999999999999999999999765 88888887755 78899999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|+++|++|+|. +|+.+..
T Consensus 95 iqsIPtV~af~----dGqpVdg 112 (304)
T COG3118 95 VQSIPTVYAFK----DGQPVDG 112 (304)
T ss_pred cCcCCeEEEee----CCcCccc
Confidence 99999999998 8887744
|
|
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-10 Score=93.01 Aligned_cols=72 Identities=21% Similarity=0.471 Sum_probs=60.3
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++||++|+.+.|.|.++++++.+ ++.++.++.|.. ..+++.|+
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~ 72 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQN------------------------PGTAPKYG 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEECCCC------------------------hhHHHhCC
Confidence 368999999999999999999999999999864 377888877644 45678899
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+..+|+++++. +|+++.+.
T Consensus 73 v~~~Pt~~~~~----~G~~~~~~ 91 (109)
T PRK09381 73 IRGIPTLLLFK----NGEVAATK 91 (109)
T ss_pred CCcCCEEEEEe----CCeEEEEe
Confidence 99999999995 88776543
|
|
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.3e-10 Score=92.50 Aligned_cols=69 Identities=26% Similarity=0.412 Sum_probs=55.6
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|+||++||++|+.+.|.+.++++++++....+.+..|+.+.+.. ..+++.|++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~----------------------~~~~~~~~i 76 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN----------------------VALCRDFGV 76 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh----------------------HHHHHhCCC
Confidence 4799999999999999999999999999997643235665555433222 678899999
Q ss_pred CccceEEEecC
Q 013684 151 EGIPCLVVLQP 161 (438)
Q Consensus 151 ~~~P~~~lvd~ 161 (438)
.++|+++++.+
T Consensus 77 ~~~Pt~~lf~~ 87 (114)
T cd02992 77 TGYPTLRYFPP 87 (114)
T ss_pred CCCCEEEEECC
Confidence 99999999985
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-10 Score=105.78 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=55.8
Q ss_pred cCCCEEEEEEec---CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 013684 234 LVGKTVGLYFSA---RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 310 (438)
Q Consensus 234 ~~gk~vll~F~a---~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 310 (438)
.++...++.|++ +||++|+.+.|.+.++.+++. ++++..+++|.+.
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-----------~~~i~~v~vd~~~-------------------- 65 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-----------KLKLEIYDFDTPE-------------------- 65 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-----------CceEEEEecCCcc--------------------
Confidence 344455666777 999999999999999988874 3566777776442
Q ss_pred hhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 311 TIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 311 ~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
..++++.|+|.++||++++ ++|+.+
T Consensus 66 -~~~l~~~~~V~~~Pt~~~f-~~g~~~ 90 (215)
T TIGR02187 66 -DKEEAEKYGVERVPTTIIL-EEGKDG 90 (215)
T ss_pred -cHHHHHHcCCCccCEEEEE-eCCeee
Confidence 3789999999999999999 567665
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-10 Score=96.85 Aligned_cols=71 Identities=24% Similarity=0.504 Sum_probs=59.2
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++|+++|+||++||++|+.+.|.|.++++++.+ ++.++.|+.|.. ..+++.|+
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~~------------------------~~l~~~~~ 103 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG---KVRFVKVNTEAE------------------------RELSARFR 103 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEeCCCC------------------------HHHHHhcC
Confidence 479999999999999999999999999988754 377777765533 67889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|++++++ +|+++.+
T Consensus 104 V~~~Ptlii~~----~G~~v~~ 121 (139)
T PRK10996 104 IRSIPTIMIFK----NGQVVDM 121 (139)
T ss_pred CCccCEEEEEE----CCEEEEE
Confidence 99999998885 8877654
|
|
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=90.67 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=88.5
Q ss_pred CCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-------
Q 013684 216 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD------- 287 (438)
Q Consensus 216 ~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d------- 287 (438)
.-||++ +.+|+ .+++++++||++||.-.|+.|+.-. ....|+.||++|+++ +++|+++.++
T Consensus 5 ~yd~~~~~~~G~-~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~---------Gf~VLgFPcNQF~~QEP 73 (162)
T COG0386 5 IYDFSVKDIDGE-PVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDK---------GFEVLGFPCNQFGGQEP 73 (162)
T ss_pred cccceeeccCCC-CccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhC---------CcEEEeccccccccCCC
Confidence 457888 99999 9999999999999999999999877 445589999999987 9999999986
Q ss_pred CCHHHHHHHHhcCCCcccccCCc------hhHHHHHh----cC----cCce---eeEEEECCCCcEEEccc
Q 013684 288 RDQTSFESYFGTMPWLALPFGDP------TIKELTKY----FD----VQGI---PCLVIIGPEGKTVTKQG 341 (438)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~d------~~~~l~~~----~~----v~~~---P~~~lid~~G~i~~~~~ 341 (438)
.+.+++++|++..-..+||+... ....|.+. .. -..+ =+-||||++|+|+.|..
T Consensus 74 g~~eEI~~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 74 GSDEEIAKFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred CCHHHHHHHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 35678999998666688887332 11222222 21 1111 17799999999999964
|
|
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=88.19 Aligned_cols=65 Identities=23% Similarity=0.460 Sum_probs=55.7
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|+.+.|.+.++++++.+. +.++.++++.. ..+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~----------~~~~~id~~~~-----------------------~~~ 64 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI----------VKVGAVDADVH-----------------------QSL 64 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC----------ceEEEEECcch-----------------------HHH
Confidence 467999999999999999999999999988643 77888877643 568
Q ss_pred HHhcCcCceeeEEEECCC
Q 013684 316 TKYFDVQGIPCLVIIGPE 333 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~ 333 (438)
++.|+|.++|++++++.+
T Consensus 65 ~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 65 AQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred HHHCCCCccCEEEEECCC
Confidence 899999999999999644
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.1e-10 Score=89.46 Aligned_cols=73 Identities=25% Similarity=0.438 Sum_probs=59.6
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|.||++||++|+.+.|.+.+++++++.. +++.++.|+++.. ...+
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~~----------------------~~~~ 67 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE--------DDVVIAKVDADEA----------------------NKDL 67 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC--------CCEEEEEEECCCc----------------------chhh
Confidence 568999999999999999999999999998732 3577777777652 1578
Q ss_pred HHhcCcCceeeEEEECCCCcEEE
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
++.|+|.++|++++++++|+...
T Consensus 68 ~~~~~i~~~P~~~~~~~~~~~~~ 90 (105)
T cd02998 68 AKKYGVSGFPTLKFFPKGSTEPV 90 (105)
T ss_pred HHhCCCCCcCEEEEEeCCCCCcc
Confidence 99999999999999977764443
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=98.57 Aligned_cols=118 Identities=24% Similarity=0.365 Sum_probs=94.6
Q ss_pred CCcc-CCCCCceeeccccCCCEEEEEEecCCCh-hhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---CHHH
Q 013684 218 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQTS 292 (438)
Q Consensus 218 ~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~~~~ 292 (438)
.|+| +++|+ .+.-.++.||++|++|..+.|| .|..++..|..+.+++.++. +-.+.-|+|++|. +.+.
T Consensus 121 pF~L~d~~Gk-~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~------~~~~~PlFIsvDPeRD~~~~ 193 (280)
T KOG2792|consen 121 PFSLVDHDGK-RVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKP------GLPPVPLFISVDPERDSVEV 193 (280)
T ss_pred ceEEEecCCC-eecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccC------CCCccceEEEeCcccCCHHH
Confidence 5999 99999 9999999999999999999999 69999999999999988651 2334478999986 6778
Q ss_pred HHHHHhcCC--CcccccCCchhHHHHHhcCcC--cee-------------eEEEECCCCcEEEcccc
Q 013684 293 FESYFGTMP--WLALPFGDPTIKELTKYFDVQ--GIP-------------CLVIIGPEGKTVTKQGR 342 (438)
Q Consensus 293 ~~~~~~~~~--~~~~p~~~d~~~~l~~~~~v~--~~P-------------~~~lid~~G~i~~~~~~ 342 (438)
+++|+++.. .+-+.-.-+....++++|.|- .-| .+|||||+|+.+...|+
T Consensus 194 ~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~Gr 260 (280)
T KOG2792|consen 194 VAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGR 260 (280)
T ss_pred HHHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcc
Confidence 999998755 234444555677889999872 112 57999999999987653
|
|
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-10 Score=94.35 Aligned_cols=77 Identities=21% Similarity=0.386 Sum_probs=56.4
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
.+..++|+|+|+|||+||++|+.+.|.+.+..+..... ..++.|++|.+.+ .+.
T Consensus 14 ~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~~-----------------------~~~ 67 (117)
T cd02959 14 EAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDEE-----------------------PKD 67 (117)
T ss_pred HHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCCC-----------------------chh
Confidence 34457899999999999999999999999976654432 2345556654321 122
Q ss_pred hhcCcCc--cceEEEecCCCCCCCcccc
Q 013684 146 RKFDIEG--IPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 146 ~~~~v~~--~P~~~lvd~~~~~G~v~~~ 171 (438)
..|++.+ +|+++++++ +|+++.+
T Consensus 68 ~~~~~~g~~vPt~~f~~~---~Gk~~~~ 92 (117)
T cd02959 68 EEFSPDGGYIPRILFLDP---SGDVHPE 92 (117)
T ss_pred hhcccCCCccceEEEECC---CCCCchh
Confidence 4577765 999999999 9988765
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.7e-10 Score=90.82 Aligned_cols=74 Identities=18% Similarity=0.362 Sum_probs=58.1
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|+||++||++|+.+.|.+.++++.+++.+ .+.++.++.+.+.. ..+++.|+
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~----------------------~~~~~~~~ 72 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKPEH----------------------DALKEEYN 72 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCCcc----------------------HHHHHhCC
Confidence 46799999999999999999999999999997643 35666555543211 67889999
Q ss_pred cCccceEEEecCCCCCCCccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~ 170 (438)
+.++|+++++. +|+++.
T Consensus 73 i~~~Pt~~~~~----~g~~~~ 89 (104)
T cd02997 73 VKGFPTFKYFE----NGKFVE 89 (104)
T ss_pred CccccEEEEEe----CCCeeE
Confidence 99999988876 666543
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-10 Score=93.18 Aligned_cols=95 Identities=21% Similarity=0.366 Sum_probs=65.3
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+||+++++||++|||+|+.+.+.+.+..+-......++.++.++++++...........+. .. ......++.+.|+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KN-VRLSNKELAQRYG 79 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SS-CHHHHHHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hh-hhHHHHHHHHHcC
Confidence 6899999999999999999999888755432222124888999888766554444443221 11 1223478999999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|+++++|+ +|+++.+
T Consensus 80 v~gtPt~~~~d~---~G~~v~~ 98 (112)
T PF13098_consen 80 VNGTPTIVFLDK---DGKIVYR 98 (112)
T ss_dssp --SSSEEEECTT---TSCEEEE
T ss_pred CCccCEEEEEcC---CCCEEEE
Confidence 999999999999 9997754
|
... |
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.2e-10 Score=101.46 Aligned_cols=91 Identities=22% Similarity=0.391 Sum_probs=70.0
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
--+|.|+|+|+|.||+||+..+|.++.+.++|++ ..++-|++|. .+
T Consensus 19 ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-----------aVFlkVdVd~-----------------------c~ 64 (288)
T KOG0908|consen 19 AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-----------AVFLKVDVDE-----------------------CR 64 (288)
T ss_pred cCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-----------cEEEEEeHHH-----------------------hh
Confidence 3468999999999999999999999999999963 4555555553 36
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccC
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL 374 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~ 374 (438)
..+..+||+++||++++ .+|+-+.. ..|+++ ..|++.+.+.+...
T Consensus 65 ~taa~~gV~amPTFiff-~ng~kid~-------~qGAd~--------~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 65 GTAATNGVNAMPTFIFF-RNGVKIDQ-------IQGADA--------SGLEEKVAKYASTS 109 (288)
T ss_pred chhhhcCcccCceEEEE-ecCeEeee-------ecCCCH--------HHHHHHHHHHhccC
Confidence 67888999999999999 88877765 345444 66677776655443
|
|
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=97.35 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=58.3
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++|+|+||++||++|+.+.|.|.+++++|. .+.++-|+++. ..+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-----------~vkF~kVd~d~------------------------~~l 127 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-----------AVKFCKIRASA------------------------TGA 127 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC-----------CeEEEEEeccc------------------------hhh
Confidence 4599999999999999999999999998875 36677776652 147
Q ss_pred HHhcCcCceeeEEEECCCCcEEEcc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
...|+|.++||++++ ++|+++.+.
T Consensus 128 ~~~f~v~~vPTllly-k~G~~v~~~ 151 (175)
T cd02987 128 SDEFDTDALPALLVY-KGGELIGNF 151 (175)
T ss_pred HHhCCCCCCCEEEEE-ECCEEEEEE
Confidence 788999999999999 899998764
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.1e-10 Score=88.59 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=60.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++++||++||++|+.+.|.+.++.+++.+ ++.++.|+.|.. .++.+.++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~v~~~~id~d~~------------------------~~l~~~~~ 64 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG---AVHFVEIDIDED------------------------QEIAEAAG 64 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEECCCC------------------------HHHHHHCC
Confidence 568999999999999999999999999999854 377777766643 56788999
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.++|++++++ +|+++.+.
T Consensus 65 v~~vPt~~i~~----~g~~v~~~ 83 (97)
T cd02949 65 IMGTPTVQFFK----DKELVKEI 83 (97)
T ss_pred CeeccEEEEEE----CCeEEEEE
Confidence 99999999995 77776543
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.4e-10 Score=90.72 Aligned_cols=72 Identities=17% Similarity=0.297 Sum_probs=61.6
Q ss_pred CCCEEEEEEeccC--CccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhh
Q 013684 70 EGKVTALYFSANW--YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 147 (438)
Q Consensus 70 ~gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 147 (438)
.|..++|+||++| ||+|+.+.|.|.++++++.+. +.++.|+.|.. ..++..
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~------------------------~~la~~ 78 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADE------------------------QALAAR 78 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCC------------------------HHHHHH
Confidence 5678999999997 999999999999999998654 66777766644 689999
Q ss_pred cCcCccceEEEecCCCCCCCccccc
Q 013684 148 FDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 148 ~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|+|.++||++++. +|+++.+.
T Consensus 79 f~V~sIPTli~fk----dGk~v~~~ 99 (111)
T cd02965 79 FGVLRTPALLFFR----DGRYVGVL 99 (111)
T ss_pred cCCCcCCEEEEEE----CCEEEEEE
Confidence 9999999999998 88877654
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=88.77 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=53.6
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
++.++|+||++||++|+.+.|.+.++.+.+ + .+.++.|+.|.. .++
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~----------~i~~~~vd~d~~-----------------------~~l 67 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D----------KLKLEIYDFDED-----------------------KEK 67 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C----------ceEEEEEeCCcC-----------------------HHH
Confidence 456889999999999999999999998775 2 478888888754 578
Q ss_pred HHhcCcCceeeEEEECC
Q 013684 316 TKYFDVQGIPCLVIIGP 332 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~ 332 (438)
++.|+|.++||+++++.
T Consensus 68 ~~~~~v~~vPt~~i~~~ 84 (113)
T cd02975 68 AEKYGVERVPTTIFLQD 84 (113)
T ss_pred HHHcCCCcCCEEEEEeC
Confidence 89999999999999954
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.1e-10 Score=88.04 Aligned_cols=71 Identities=21% Similarity=0.407 Sum_probs=57.6
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|+||++||++|+.+.|.|.++.+++. .++.++.++.+.. .+++++|++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~---~~i~~~~vd~~~~------------------------~~~~~~~~i 66 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF---PSVLFLSIEAEEL------------------------PEISEKFEI 66 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC---CceEEEEEccccC------------------------HHHHHhcCC
Confidence 6899999999999999999999999999972 2366666644322 678899999
Q ss_pred CccceEEEecCCCCCCCccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..+|++++++ +|+++.+.
T Consensus 67 ~~~Pt~~~~~----~g~~~~~~ 84 (97)
T cd02984 67 TAVPTFVFFR----NGTIVDRV 84 (97)
T ss_pred ccccEEEEEE----CCEEEEEE
Confidence 9999999996 78776553
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=90.34 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=59.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++|+|+||++||++|+.+.|.|.++.+++. ++.++-|++|.. ..++++|+
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~----~i~f~~Vd~~~~------------------------~~l~~~~~ 72 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL----ETKFIKVNAEKA------------------------PFLVEKLN 72 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC----CCEEEEEEcccC------------------------HHHHHHCC
Confidence 35799999999999999999999999998873 367777766644 67899999
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|..+|+++++. +|+.+.+.
T Consensus 73 v~~vPt~l~fk----~G~~v~~~ 91 (113)
T cd02989 73 IKVLPTVILFK----NGKTVDRI 91 (113)
T ss_pred CccCCEEEEEE----CCEEEEEE
Confidence 99999999998 78777554
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.9e-10 Score=89.76 Aligned_cols=70 Identities=21% Similarity=0.415 Sum_probs=58.1
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|.||++||++|+.+.|.|.++++.++..+ ++.++.++.|.. ..+++.|+
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~------------------------~~~~~~~~ 66 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATAE------------------------KDLASRFG 66 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccch------------------------HHHHHhCC
Confidence 68999999999999999999999999999986642 466665544422 67889999
Q ss_pred cCccceEEEecCCCCCCC
Q 013684 150 IEGIPCLVVLQPYDDKDD 167 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~ 167 (438)
+.++|+++++++ ++.
T Consensus 67 i~~~P~~~~~~~---~~~ 81 (102)
T TIGR01126 67 VSGFPTIKFFPK---GKK 81 (102)
T ss_pred CCcCCEEEEecC---CCc
Confidence 999999999997 654
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.5e-10 Score=88.46 Aligned_cols=74 Identities=23% Similarity=0.419 Sum_probs=60.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|.||++||++|+.+.|.+.++++.++.. .++.++.|+++.+ ..
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~-----------------------~~ 62 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD--------GKVVVAKVDCTAN-----------------------ND 62 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC--------CceEEEEeeccch-----------------------HH
Confidence 3458999999999999999999999999988511 2577877777643 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|++++++++|+.+.+
T Consensus 63 ~~~~~~i~~~Pt~~~~~~~~~~~~~ 87 (101)
T cd02961 63 LCSEYGVRGYPTIKLFPNGSKEPVK 87 (101)
T ss_pred HHHhCCCCCCCEEEEEcCCCccccc
Confidence 8999999999999999877644433
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.9e-10 Score=92.16 Aligned_cols=80 Identities=18% Similarity=0.406 Sum_probs=63.0
Q ss_pred CCCEEEEEEec-------cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHH
Q 013684 70 EGKVTALYFSA-------NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK 142 (438)
Q Consensus 70 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~ 142 (438)
+|++|+|.||| +|||+|+.+.|.|.++.+++++ ++.++.|++|.... |. +. ..
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~---~v~fv~Vdvd~~~~----------w~-----d~--~~ 79 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE---DCVFIYCDVGDRPY----------WR-----DP--NN 79 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC---CCEEEEEEcCCccc----------cc-----Cc--ch
Confidence 57899999999 9999999999999999999863 37788888875431 00 11 26
Q ss_pred HHhhhcCcC-ccceEEEecCCCCCCCccccc
Q 013684 143 ALNRKFDIE-GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 143 ~l~~~~~v~-~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.+...|+|. ++||+++++. .++++..+
T Consensus 80 ~~~~~~~I~~~iPT~~~~~~---~~~l~~~~ 107 (119)
T cd02952 80 PFRTDPKLTTGVPTLLRWKT---PQRLVEDE 107 (119)
T ss_pred hhHhccCcccCCCEEEEEcC---Cceecchh
Confidence 888999998 9999999986 55665444
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=87.85 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=57.3
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++||++|+.+.|.|.++++++. ++.++.|+.+.. ..+++.|+
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~------------------------~~~~~~~~ 68 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDEL------------------------SEVAEKEN 68 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcch------------------------HHHHHHCC
Confidence 46899999999999999999999999998753 355655544321 67889999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.++|+++++. +|+++.+..
T Consensus 69 v~~~Pt~~~~~----~g~~~~~~~ 88 (98)
T PTZ00051 69 ITSMPTFKVFK----NGSVVDTLL 88 (98)
T ss_pred CceeeEEEEEe----CCeEEEEEe
Confidence 99999988774 888775543
|
|
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=88.08 Aligned_cols=70 Identities=26% Similarity=0.632 Sum_probs=59.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++||++|+.+.|.|.++.+++.+ ++.++.|+.+.. ..+++.|+
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~------------------------~~l~~~~~ 68 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDEN------------------------KELCKKYG 68 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTS------------------------HHHHHHTT
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhcc------------------------chhhhccC
Confidence 369999999999999999999999999999876 377777766533 68899999
Q ss_pred cCccceEEEecCCCCCCCccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~ 170 (438)
|.++|+++++. +|+...
T Consensus 69 v~~~Pt~~~~~----~g~~~~ 85 (103)
T PF00085_consen 69 VKSVPTIIFFK----NGKEVK 85 (103)
T ss_dssp CSSSSEEEEEE----TTEEEE
T ss_pred CCCCCEEEEEE----CCcEEE
Confidence 99999999998 665554
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-09 Score=87.18 Aligned_cols=67 Identities=27% Similarity=0.448 Sum_probs=55.4
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|.||++||++|+.+.|.+.++++.++.. .++.++.++.+.. . ..+++.|++
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~-~----------------------~~~~~~~~i 73 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEA-N----------------------KDLAKKYGV 73 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCc-c----------------------hhhHHhCCC
Confidence 579999999999999999999999999998733 2466666655431 1 678999999
Q ss_pred CccceEEEecC
Q 013684 151 EGIPCLVVLQP 161 (438)
Q Consensus 151 ~~~P~~~lvd~ 161 (438)
.++|++++++.
T Consensus 74 ~~~P~~~~~~~ 84 (105)
T cd02998 74 SGFPTLKFFPK 84 (105)
T ss_pred CCcCEEEEEeC
Confidence 99999999996
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-09 Score=90.93 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=94.0
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCC-EEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.+|+.+|||+| |.||+ .++|.++.|+ +|+++|| +...|.|.+..-.+..-|++++.. +.+|+++|.|
T Consensus 64 ~~Gd~iPD~tL~dedg~-sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka---------~aeV~GlS~D 133 (211)
T KOG0855|consen 64 NKGDAIPDFTLKDEDGK-SISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA---------GAEVIGLSGD 133 (211)
T ss_pred ecCCcCCCcccccCCCC-eeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc---------CceEEeeccC
Confidence 46899999999 99999 9999999985 8888888 456788999999999999999865 7899999998
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCcee-------eEEEECCCC
Q 013684 288 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIP-------CLVIIGPEG 334 (438)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P-------~~~lid~~G 334 (438)
+....++|..+.+ +.+..+.|..+++.+.+|+.+.| ..++++++|
T Consensus 134 -~s~sqKaF~sKqn-lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 134 -DSASQKAFASKQN-LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGG 185 (211)
T ss_pred -chHHHHHhhhhcc-CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCC
Confidence 4456677776665 67777899999999999997655 668887775
|
|
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.6e-09 Score=81.13 Aligned_cols=63 Identities=14% Similarity=0.297 Sum_probs=51.4
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh
Q 013684 239 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 318 (438)
Q Consensus 239 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 318 (438)
.+..||++||++|+...|.+.+++++++. .+.++.|+.+.+ .++.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~----------~~~~~~vd~~~~-----------------------~~~~~~ 48 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD----------AVEVEYINVMEN-----------------------PQKAME 48 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC----------ceEEEEEeCccC-----------------------HHHHHH
Confidence 46689999999999999999999988864 377888887654 456788
Q ss_pred cCcCceeeEEEECCCCcEE
Q 013684 319 FDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 319 ~~v~~~P~~~lid~~G~i~ 337 (438)
||+.++|++++ +|+.+
T Consensus 49 ~~v~~vPt~~~---~g~~~ 64 (82)
T TIGR00411 49 YGIMAVPAIVI---NGDVE 64 (82)
T ss_pred cCCccCCEEEE---CCEEE
Confidence 99999999875 66643
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.8e-09 Score=87.79 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=93.0
Q ss_pred cCCCCCcc----CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 214 NHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 214 ~~~~~f~l----~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
.++|+|.- +..-+ .+++++++||+|++.|| ..+.-.|..+.-.+...+.+|++. |-+|+++|+|+
T Consensus 8 ~p~p~fk~~aVVdG~f~-e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~---------n~eVig~S~DS 77 (196)
T KOG0852|consen 8 KPAPDFKGTAVVDGEFK-EIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL---------NTEVLGISTDS 77 (196)
T ss_pred CCCCCcceeEEEcCcce-EEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc---------CCeEEEEeccc
Confidence 34577763 55556 89999999999999999 457778999999999999999976 89999999995
Q ss_pred CH--HHHHHHHhcCC---CcccccCCchhHHHHHhcCc----C--ceeeEEEECCCCcEEEcc
Q 013684 289 DQ--TSFESYFGTMP---WLALPFGDPTIKELTKYFDV----Q--GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~--~~~~~~~~~~~---~~~~p~~~d~~~~l~~~~~v----~--~~P~~~lid~~G~i~~~~ 340 (438)
.- -+|...-.+.+ -+++|++.|.+.++++.||| . .+-.+++||++|.++...
T Consensus 78 ~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it 140 (196)
T KOG0852|consen 78 VFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQIT 140 (196)
T ss_pred hhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEee
Confidence 42 23444444443 35699999999999999999 3 455889999999998754
|
|
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-09 Score=89.03 Aligned_cols=69 Identities=17% Similarity=0.294 Sum_probs=56.3
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|+||++||++|+.+.|.|.++++++. ++.++.|+.+ . ..+++.|+|
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~----~v~f~~vd~~------------------------~-~~l~~~~~i 74 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP----ETKFVKINAE------------------------K-AFLVNYLDI 74 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CcEEEEEEch------------------------h-hHHHHhcCC
Confidence 5899999999999999999999999999873 2556655443 1 177889999
Q ss_pred CccceEEEecCCCCCCCccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..+|+++++. +|+.+.+.
T Consensus 75 ~~~Pt~~~f~----~G~~v~~~ 92 (113)
T cd02957 75 KVLPTLLVYK----NGELIDNI 92 (113)
T ss_pred CcCCEEEEEE----CCEEEEEE
Confidence 9999999998 78777554
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-09 Score=108.03 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=58.3
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
.++++++|+|||+||++|+.+.|.+.++++++++. ++.|+.|++|.+. ..
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~---------~v~~~kVdvD~~~---------------------~~ 418 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS---------GVKVAKFRADGDQ---------------------KE 418 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC---------CcEEEEEECCCCc---------------------cH
Confidence 36789999999999999999999999999999754 5888999888652 12
Q ss_pred HHHHhcCcCceeeEEEECCCC
Q 013684 314 ELTKYFDVQGIPCLVIIGPEG 334 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G 334 (438)
...+.|+|.++||++++ ++|
T Consensus 419 ~~~~~~~I~~~PTii~F-k~g 438 (463)
T TIGR00424 419 FAKQELQLGSFPTILFF-PKH 438 (463)
T ss_pred HHHHHcCCCccceEEEE-ECC
Confidence 33478999999999999 444
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-09 Score=100.06 Aligned_cols=69 Identities=19% Similarity=0.351 Sum_probs=56.2
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|+|||+||++|+.+.|.+.++++++++. +.+..|+.+.. ..++++|+|
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~------------------------~~l~~~~~I 104 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRA------------------------LNLAKRFAI 104 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCccc------------------------HHHHHHcCC
Confidence 579999999999999999999999999998642 55555543322 678899999
Q ss_pred CccceEEEecCCCCCCCccc
Q 013684 151 EGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~ 170 (438)
.++|++++++ +|+++.
T Consensus 105 ~~~PTl~~f~----~G~~v~ 120 (224)
T PTZ00443 105 KGYPTLLLFD----KGKMYQ 120 (224)
T ss_pred CcCCEEEEEE----CCEEEE
Confidence 9999999998 676553
|
|
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-09 Score=96.98 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=56.8
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++|+|.||++||++|+.+.|.|.+++++|. .+.++-|+++. .
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-----------~vkFvkI~ad~--------------------------~ 144 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP-----------DTKFVKIISTQ--------------------------C 144 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC-----------CCEEEEEEhHH--------------------------h
Confidence 4699999999999999999999999999885 35677776641 1
Q ss_pred HHhcCcCceeeEEEECCCCcEEEcc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
...|++.++||++++ ++|+++.+.
T Consensus 145 ~~~~~i~~lPTlliy-k~G~~v~~i 168 (192)
T cd02988 145 IPNYPDKNLPTILVY-RNGDIVKQF 168 (192)
T ss_pred HhhCCCCCCCEEEEE-ECCEEEEEE
Confidence 467999999999999 999999874
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.7e-09 Score=94.50 Aligned_cols=116 Identities=17% Similarity=0.358 Sum_probs=93.7
Q ss_pred cccccCCCCCEEeccccCCCEEEEEEeccCCc-cchhhHHHHHHHHHHHh-cCCCCEEEEEEecC---CCHHHHHHhHh-
Q 013684 53 RMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELR-NNGSDFEVVFVSSD---EDLNAFNNYRA- 126 (438)
Q Consensus 53 ~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~-~~~~~~~iv~vs~D---~~~~~~~~~~~- 126 (438)
++.+.+.+|+.+++.+++||+++|+|..+.|| .|..++..|.++.+++. ..+.++++++|++| ++++.+++|..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 34488999999999999999999999999999 99999999999999998 66778999999998 46677778877
Q ss_pred cC--CcccccCCChHHHHHHhhhcCcC---------------ccceEEEecCCCCCCCccccc
Q 013684 127 CM--PWLAVPYSDLETKKALNRKFDIE---------------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 127 ~~--~~~~~~~~d~~~~~~l~~~~~v~---------------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.. .|..+... .....++++.|+|. +...++++|+ +|++....
T Consensus 129 ~~~~~~~~ltg~-~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~---~G~~~~~~ 187 (207)
T COG1999 129 NFDPRWIGLTGT-PEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDA---DGRFLGTY 187 (207)
T ss_pred cCCCCeeeeeCC-HHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECC---CCeEEEEe
Confidence 22 25555553 45557888887775 3456788998 99887554
|
|
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-09 Score=85.96 Aligned_cols=64 Identities=22% Similarity=0.400 Sum_probs=54.2
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|.||++||++|+.+.|.|.++++++... +.++.++.+.. ..++++|+|
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~------------------------~~~~~~~~i 70 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVH------------------------QSLAQQYGV 70 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcch------------------------HHHHHHCCC
Confidence 567999999999999999999999999998642 66776655432 678899999
Q ss_pred CccceEEEecC
Q 013684 151 EGIPCLVVLQP 161 (438)
Q Consensus 151 ~~~P~~~lvd~ 161 (438)
.++|++++++.
T Consensus 71 ~~~P~~~~~~~ 81 (103)
T cd03001 71 RGFPTIKVFGA 81 (103)
T ss_pred CccCEEEEECC
Confidence 99999999985
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=98.92 E-value=3e-09 Score=88.22 Aligned_cols=71 Identities=11% Similarity=0.212 Sum_probs=57.7
Q ss_pred CCEEEEEEeccCCcc--ch--hhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 71 GKVTALYFSANWYPP--CG--NFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 71 gk~vll~F~a~wC~~--C~--~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
+.+++++||++||++ |+ .+.|.|.+++.++-..+ ++.++.|++|.. .++++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~------------------------~~La~ 81 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKD------------------------AKVAK 81 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCC------------------------HHHHH
Confidence 359999999999987 99 77888888888873222 388888877755 78999
Q ss_pred hcCcCccceEEEecCCCCCCCccc
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~~ 170 (438)
+|+|.++||++++. +|+++.
T Consensus 82 ~~~I~~iPTl~lfk----~G~~v~ 101 (120)
T cd03065 82 KLGLDEEDSIYVFK----DDEVIE 101 (120)
T ss_pred HcCCccccEEEEEE----CCEEEE
Confidence 99999999999997 787654
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.8e-09 Score=86.74 Aligned_cols=85 Identities=18% Similarity=0.081 Sum_probs=59.2
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHH
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 143 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 143 (438)
..-++|+|+|+|+++||++|+.+.+.. .++.+.+.+ ++.+|.|+.+..++..+. ....
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~~~~~~~----------------~~~~ 71 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREERPDVDKI----------------YMNA 71 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcCcHHHHH----------------HHHH
Confidence 344689999999999999999987633 245555533 377777776654331111 1122
Q ss_pred HhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 144 LNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 144 l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
....|++.++|+++++++ +|++++...
T Consensus 72 ~~~~~~~~G~Pt~vfl~~---~G~~~~~~~ 98 (124)
T cd02955 72 AQAMTGQGGWPLNVFLTP---DLKPFFGGT 98 (124)
T ss_pred HHHhcCCCCCCEEEEECC---CCCEEeeee
Confidence 333679999999999999 999987754
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-09 Score=88.10 Aligned_cols=81 Identities=17% Similarity=0.375 Sum_probs=58.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.|+.++|+|+++|||+|+.+.|.|.++.++. +..++.|++|.+.. ....+.....++.+.|+
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGS-------------FEMSSLNDLTAFRSRFG 83 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccC-------------cCcccHHHHHHHHHHcC
Confidence 4688999999999999999999999998872 26689999885431 00111111245666655
Q ss_pred ----cCccceEEEecCCCCCCCccccc
Q 013684 150 ----IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 ----v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.++||++++. +|+.+.+.
T Consensus 84 i~~~i~~~PT~v~~k----~Gk~v~~~ 106 (122)
T TIGR01295 84 IPTSFMGTPTFVHIT----DGKQVSVR 106 (122)
T ss_pred CcccCCCCCEEEEEe----CCeEEEEE
Confidence 55699999998 88777654
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.6e-09 Score=84.25 Aligned_cols=70 Identities=23% Similarity=0.449 Sum_probs=58.0
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|+||++||++|+.+.|.|.++.+++.. ++.++.|+.+.. ..++++|++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~v 66 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNVDEN------------------------PDIAAKYGI 66 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEECCCC------------------------HHHHHHcCC
Confidence 57999999999999999999999999988753 377887766543 567889999
Q ss_pred CccceEEEecCCCCCCCcccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~ 171 (438)
..+|+++++. +|++...
T Consensus 67 ~~~P~~~~~~----~g~~~~~ 83 (101)
T TIGR01068 67 RSIPTLLLFK----NGKEVDR 83 (101)
T ss_pred CcCCEEEEEe----CCcEeee
Confidence 9999999995 7765543
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.2e-09 Score=105.22 Aligned_cols=68 Identities=19% Similarity=0.360 Sum_probs=57.2
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|+|||+||++|+.+.|.+.+++++|.+. ++.|+.|++|.+. ..
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~---------~V~f~kVD~d~~~----------------------~~ 412 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS---------GVKVAKFRADGDQ----------------------KE 412 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC---------CeEEEEEECCCcc----------------------hH
Confidence 6799999999999999999999999999998754 6888888888331 45
Q ss_pred HHH-hcCcCceeeEEEECCC
Q 013684 315 LTK-YFDVQGIPCLVIIGPE 333 (438)
Q Consensus 315 l~~-~~~v~~~P~~~lid~~ 333 (438)
++. .|+|.++||++++.++
T Consensus 413 la~~~~~I~~~PTil~f~~g 432 (457)
T PLN02309 413 FAKQELQLGSFPTILLFPKN 432 (457)
T ss_pred HHHhhCCCceeeEEEEEeCC
Confidence 564 6999999999999443
|
|
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-09 Score=85.03 Aligned_cols=67 Identities=18% Similarity=0.375 Sum_probs=56.1
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|.||++||++|+.+.|.+.++++.++.. .++.++.++.+.. ..+++.|+
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~------------------------~~~~~~~~ 68 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD-GKVVVAKVDCTAN------------------------NDLCSEYG 68 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC-CceEEEEeeccch------------------------HHHHHhCC
Confidence 4569999999999999999999999999998622 2477776665532 68899999
Q ss_pred cCccceEEEecC
Q 013684 150 IEGIPCLVVLQP 161 (438)
Q Consensus 150 v~~~P~~~lvd~ 161 (438)
|..+|+++++++
T Consensus 69 i~~~Pt~~~~~~ 80 (101)
T cd02961 69 VRGYPTIKLFPN 80 (101)
T ss_pred CCCCCEEEEEcC
Confidence 999999999997
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.9e-09 Score=86.39 Aligned_cols=102 Identities=13% Similarity=0.204 Sum_probs=68.5
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 308 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 308 (438)
+.-+||+++|+|++.||++|+.+...+- ++.+... + ++.+|-+..|.... +
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-~---------~Fv~V~l~~d~td~------------~---- 72 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-E---------DFIMLNLVHETTDK------------N---- 72 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-h---------CeEEEEEEeccCCC------------C----
Confidence 3456899999999999999999887643 2333332 2 35444444442210 0
Q ss_pred CchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHh
Q 013684 309 DPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA 371 (438)
Q Consensus 309 ~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~ 371 (438)
.. ..| .++||++++|++|+++.+- ...++...|...+.+++.|.+.+++.+
T Consensus 73 ----~~---~~g-~~vPtivFld~~g~vi~~i----~Gy~~~~~~~y~~~~~~~~~~~m~~a~ 123 (130)
T cd02960 73 ----LS---PDG-QYVPRIMFVDPSLTVRADI----TGRYSNRLYTYEPADIPLLIENMKKAL 123 (130)
T ss_pred ----cC---ccC-cccCeEEEECCCCCCcccc----cccccCccceeCcCcHHHHHHHHHHHH
Confidence 00 122 5799999999999998763 335566778888898888888887643
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.2e-09 Score=84.58 Aligned_cols=67 Identities=21% Similarity=0.470 Sum_probs=54.1
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|+.+.|.+.++++.+++. .++.+..|+++.. ++
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~~------------------------~~ 65 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD--------DNVVIAKMDATAN------------------------DV 65 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC--------CCEEEEEEeCcch------------------------hh
Confidence 578999999999999999999999999998752 2466777766532 35
Q ss_pred HHhcCcCceeeEEEECCCC
Q 013684 316 TKYFDVQGIPCLVIIGPEG 334 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G 334 (438)
...+++.++|+++++.+++
T Consensus 66 ~~~~~~~~~Pt~~~~~~~~ 84 (104)
T cd02995 66 PSEFVVDGFPTILFFPAGD 84 (104)
T ss_pred hhhccCCCCCEEEEEcCCC
Confidence 6778899999999995444
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.7e-09 Score=85.34 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=53.3
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
++.++|+||++||++|+.+.|.|.++.+.+ + .+++..|+.|.. .++++.|+|
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~~------------------------~~l~~~~~v 73 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDED------------------------KEKAEKYGV 73 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCcC------------------------HHHHHHcCC
Confidence 467899999999999999999999998775 2 377777777643 678899999
Q ss_pred CccceEEEecC
Q 013684 151 EGIPCLVVLQP 161 (438)
Q Consensus 151 ~~~P~~~lvd~ 161 (438)
.++|++++++.
T Consensus 74 ~~vPt~~i~~~ 84 (113)
T cd02975 74 ERVPTTIFLQD 84 (113)
T ss_pred CcCCEEEEEeC
Confidence 99999999984
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-08 Score=78.66 Aligned_cols=69 Identities=30% Similarity=0.581 Sum_probs=57.8
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|..+.+.+.++.++ . . ++.++.|+++.. ..+
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~-~---------~~~~~~i~~~~~-----------------------~~~ 55 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y-P---------KVKFVKVDVDEN-----------------------PEL 55 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH-C-C---------CceEEEEECCCC-----------------------hhH
Confidence 37899999999999999999999998877 2 2 578888888754 568
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+.|++.++|+++++ .+|+++..
T Consensus 56 ~~~~~v~~~P~~~~~-~~g~~~~~ 78 (93)
T cd02947 56 AEEYGVRSIPTFLFF-KNGKEVDR 78 (93)
T ss_pred HHhcCcccccEEEEE-ECCEEEEE
Confidence 889999999999999 56776654
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-08 Score=104.26 Aligned_cols=73 Identities=21% Similarity=0.418 Sum_probs=59.8
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
.+++.++|.|||+||++|+++.|.+.++++.+++. +.++.+..|+++.+ .
T Consensus 47 ~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~-------~~~i~~~~vd~~~~-----------------------~ 96 (477)
T PTZ00102 47 TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEK-------KSEIVLASVDATEE-----------------------M 96 (477)
T ss_pred hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhc-------CCcEEEEEEECCCC-----------------------H
Confidence 35789999999999999999999999999988754 33566666666544 6
Q ss_pred HHHHhcCcCceeeEEEECCCCcE
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i 336 (438)
.++++|+|.++||+++++.++.+
T Consensus 97 ~l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 97 ELAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred HHHHhcCCCcccEEEEEECCceE
Confidence 78999999999999999655444
|
|
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.7e-09 Score=104.47 Aligned_cols=72 Identities=22% Similarity=0.438 Sum_probs=60.7
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
.....+||.||||||++|++++|++.+.++.++.. +..+.+.-|.+..+ .
T Consensus 40 ~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~-------~s~i~LakVDat~~-----------------------~ 89 (493)
T KOG0190|consen 40 NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEE-------GSPVKLAKVDATEE-----------------------S 89 (493)
T ss_pred ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhcc-------CCCceeEEeecchh-----------------------h
Confidence 34578999999999999999999999999999875 45566666655433 7
Q ss_pred HHHHhcCcCceeeEEEECCCCcE
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i 336 (438)
.++.+|+|+++||+.++ ++|+.
T Consensus 90 ~~~~~y~v~gyPTlkiF-rnG~~ 111 (493)
T KOG0190|consen 90 DLASKYEVRGYPTLKIF-RNGRS 111 (493)
T ss_pred hhHhhhcCCCCCeEEEE-ecCCc
Confidence 89999999999999999 88885
|
|
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=107.01 Aligned_cols=76 Identities=22% Similarity=0.460 Sum_probs=59.7
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 308 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 308 (438)
+..+||+|+|+|||+||++|+.+.+.+ .++.++++ ++.++.|+++++.
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-----------~~~~v~vDvt~~~------------------ 520 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-----------DTVLLQADVTANN------------------ 520 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-----------CCEEEEEECCCCC------------------
Confidence 335689999999999999999988864 45555553 4677777776442
Q ss_pred CchhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 309 DPTIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 309 ~d~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
+...++.++|++.++|+++++|++|+++
T Consensus 521 -~~~~~l~~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 521 -AEDVALLKHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred -hhhHHHHHHcCCCCCCEEEEECCCCCCc
Confidence 1246789999999999999999999985
|
|
| >KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-08 Score=91.20 Aligned_cols=120 Identities=18% Similarity=0.293 Sum_probs=93.9
Q ss_pred HhhcccccCCCCCEEeccccCCCEEEEEEeccCCc-cchhhHHHHHHHHHHHhcC-CCCEEEEEEecCC---CHHHHHHh
Q 013684 50 LRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNN-GSDFEVVFVSSDE---DLNAFNNY 124 (438)
Q Consensus 50 ~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~-~~~~~iv~vs~D~---~~~~~~~~ 124 (438)
++++|-|.+.+|+.++-.++.||+++++|..+.|| .|..++..|.++.+++... |....-++|++|. +.+.+.+|
T Consensus 118 iGGpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY 197 (280)
T KOG2792|consen 118 IGGPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEY 197 (280)
T ss_pred cCCceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHH
Confidence 46667689999999999999999999999999999 9999999999999998775 3344579999986 78888999
Q ss_pred HhcCC--cccccCCChHHHHHHhhhcCcC---------------ccceEEEecCCCCCCCcccccc
Q 013684 125 RACMP--WLAVPYSDLETKKALNRKFDIE---------------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 125 ~~~~~--~~~~~~~d~~~~~~l~~~~~v~---------------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++... ..-+.. ..+.-..+++.|.|- +.=.+||+|+ +|+.+...+
T Consensus 198 ~~eF~pkllGLTG-T~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidP---eg~Fvd~~G 259 (280)
T KOG2792|consen 198 VSEFHPKLLGLTG-TTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDP---EGEFVDYYG 259 (280)
T ss_pred HHhcChhhhcccC-CHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECC---Ccceehhhc
Confidence 98764 223333 333347788888773 2336789999 988875544
|
|
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-08 Score=81.67 Aligned_cols=78 Identities=14% Similarity=0.350 Sum_probs=57.7
Q ss_pred CCCCCEEeccc-cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCC
Q 013684 58 KEIGEEVKVSD-LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYS 136 (438)
Q Consensus 58 ~~~g~~v~l~~-~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~ 136 (438)
+++++.+.-.. -.+++++|+||++||++|+.+.|.+.++++.+++. .++.+..|+.+.
T Consensus 4 ~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~-------------------- 62 (104)
T cd02995 4 VVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATA-------------------- 62 (104)
T ss_pred EEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcc--------------------
Confidence 44455442221 23589999999999999999999999999998763 246666665442
Q ss_pred ChHHHHHHhhhcCcCccceEEEecC
Q 013684 137 DLETKKALNRKFDIEGIPCLVVLQP 161 (438)
Q Consensus 137 d~~~~~~l~~~~~v~~~P~~~lvd~ 161 (438)
.+++..+++.++|+++++.+
T Consensus 63 -----~~~~~~~~~~~~Pt~~~~~~ 82 (104)
T cd02995 63 -----NDVPSEFVVDGFPTILFFPA 82 (104)
T ss_pred -----hhhhhhccCCCCCEEEEEcC
Confidence 23556788899999999985
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=103.56 Aligned_cols=69 Identities=16% Similarity=0.364 Sum_probs=57.8
Q ss_pred cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhc
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 148 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 148 (438)
.++++|||+|||+||++|+.+.|.|.++++++++.+ +.++.|++|.+.. ....+.|
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~----------------------~~~~~~~ 424 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQK----------------------EFAKQEL 424 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCcc----------------------HHHHHHc
Confidence 367899999999999999999999999999997654 7888888775421 2345689
Q ss_pred CcCccceEEEecC
Q 013684 149 DIEGIPCLVVLQP 161 (438)
Q Consensus 149 ~v~~~P~~~lvd~ 161 (438)
+|.++||++++..
T Consensus 425 ~I~~~PTii~Fk~ 437 (463)
T TIGR00424 425 QLGSFPTILFFPK 437 (463)
T ss_pred CCCccceEEEEEC
Confidence 9999999999985
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.6e-08 Score=83.35 Aligned_cols=117 Identities=16% Similarity=0.202 Sum_probs=88.7
Q ss_pred CCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC------
Q 013684 215 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD------ 287 (438)
Q Consensus 215 ~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d------ 287 (438)
..-+|+. |.+|+ .++++.++||++|+.-.|+.|+.-...-..|+.|+++|+++ +++|++..++
T Consensus 13 siydf~~~d~~G~-~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~---------Gl~ILaFPCNQFg~QE 82 (171)
T KOG1651|consen 13 SIYDFSAKDLDGE-YVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ---------GLEILAFPCNQFGNQE 82 (171)
T ss_pred ceeeeEEecCCCC-CccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC---------CeEEEEeccccccCcC
Confidence 4467888 99999 99999999999999999999999998888999999999987 8999999995
Q ss_pred -CCHHHHHHHHhcCCCcccccC------CchhHHHHHhcCcC-------cee---eEEEECCCCcEEEccc
Q 013684 288 -RDQTSFESYFGTMPWLALPFG------DPTIKELTKYFDVQ-------GIP---CLVIIGPEGKTVTKQG 341 (438)
Q Consensus 288 -~~~~~~~~~~~~~~~~~~p~~------~d~~~~l~~~~~v~-------~~P---~~~lid~~G~i~~~~~ 341 (438)
.+.+++..++.......+|+. .+....+.+...-. .|. +-||+|++|+++.|.+
T Consensus 83 p~~n~Ei~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 83 PGSNEEILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred CCCcHHHHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 244677777764444555552 22223333332211 222 6799999999999865
|
|
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-08 Score=89.04 Aligned_cols=69 Identities=13% Similarity=0.241 Sum_probs=56.2
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++|+|+||++||++|+.+.|.|.++++++. ++.++-|+++. ..+...|+|
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d~-------------------------~~l~~~f~v 133 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRASA-------------------------TGASDEFDT 133 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEeccc-------------------------hhhHHhCCC
Confidence 3599999999999999999999999999873 36666665541 157788999
Q ss_pred CccceEEEecCCCCCCCccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..+||++++. +|+++.+-
T Consensus 134 ~~vPTlllyk----~G~~v~~~ 151 (175)
T cd02987 134 DALPALLVYK----GGELIGNF 151 (175)
T ss_pred CCCCEEEEEE----CCEEEEEE
Confidence 9999999998 88877543
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-08 Score=84.19 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=90.3
Q ss_pred HHHHhhccchhHHHHHhhcccccCCCCCEEeccccCCC-EEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEE
Q 013684 35 LRFLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGK-VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 112 (438)
Q Consensus 35 ~~~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~v 112 (438)
....+|+.+|+|+ |.|.+|+.++|.++.|+ +|+++|| +...|.|.+..-.+..-|++++..+ .+|+++
T Consensus 61 ~~v~~Gd~iPD~t--------L~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~Gl 130 (211)
T KOG0855|consen 61 LKVNKGDAIPDFT--------LKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGL 130 (211)
T ss_pred eeeecCCcCCCcc--------cccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEee
Confidence 4566899999999 99999999999999775 8888888 6667899999999999999999877 999999
Q ss_pred ecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc-------eEEEecC
Q 013684 113 SSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP-------CLVVLQP 161 (438)
Q Consensus 113 s~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P-------~~~lvd~ 161 (438)
|.|+.. .-+.|..++..+.-..+|+. .++.+.+|+...| +.++++.
T Consensus 131 S~D~s~-sqKaF~sKqnlPYhLLSDpk--~e~ik~lGa~k~p~gg~~~Rsh~if~k 183 (211)
T KOG0855|consen 131 SGDDSA-SQKAFASKQNLPYHLLSDPK--NEVIKDLGAPKDPFGGLPGRSHYIFDK 183 (211)
T ss_pred ccCchH-HHHHhhhhccCCeeeecCcc--hhHHHHhCCCCCCCCCcccceEEEEec
Confidence 999653 34556655554444444555 7888888886544 6677775
|
|
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-08 Score=92.48 Aligned_cols=73 Identities=18% Similarity=0.394 Sum_probs=58.5
Q ss_pred eccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHH
Q 013684 65 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 144 (438)
Q Consensus 65 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 144 (438)
.++.-.+|.|+|+|+|+||+||+.+.|.+.++..+|.. ..++-|++|.- +..
T Consensus 15 ~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~c------------------------~~t 66 (288)
T KOG0908|consen 15 ELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDEC------------------------RGT 66 (288)
T ss_pred hhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHHh------------------------hch
Confidence 34555679999999999999999999999999999933 55666655522 567
Q ss_pred hhhcCcCccceEEEecCCCCCCCcc
Q 013684 145 NRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 145 ~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
+..+||.++||++++. +|.-+
T Consensus 67 aa~~gV~amPTFiff~----ng~ki 87 (288)
T KOG0908|consen 67 AATNGVNAMPTFIFFR----NGVKI 87 (288)
T ss_pred hhhcCcccCceEEEEe----cCeEe
Confidence 7889999999999998 66443
|
|
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.9e-08 Score=78.87 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=56.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.|+++++.|+++||++|..+.|.+.+++++++++ +.++.|++|.. ..
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~----------v~f~~vd~~~~-----------------------~~ 57 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK----------LLFVVVDADDF-----------------------GR 57 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe----------EEEEEEchHhh-----------------------HH
Confidence 3789999999999999999999999999999854 67777776643 56
Q ss_pred HHHhcCcC--ceeeEEEECC
Q 013684 315 LTKYFDVQ--GIPCLVIIGP 332 (438)
Q Consensus 315 l~~~~~v~--~~P~~~lid~ 332 (438)
+++.||+. ++|++++++.
T Consensus 58 ~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 58 HLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred HHHHcCCChhhCCEEEEEec
Confidence 88999999 9999999966
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-07 Score=77.37 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=57.2
Q ss_pred ccccCCCEEEEEEecCCChhhhhhhHH-HH--HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 231 VSSLVGKTVGLYFSARWCIPCEKFMPK-LL--SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 231 l~~~~gk~vll~F~a~wC~~C~~~~p~-l~--~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
.+.-++|+++|+|+++||++|+.+... |. ++.+.+.+ ++.++.++++...
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~----------~~v~~~~d~~~~e----------------- 64 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE----------NFIFWQCDIDSSE----------------- 64 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh----------CEEEEEecCCCcc-----------------
Confidence 344568999999999999999998764 32 34444443 3444444443321
Q ss_pred CCchhHHHHHhcCcCceeeEEEECC-CCcEEEc
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGP-EGKTVTK 339 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~-~G~i~~~ 339 (438)
...+.+.|++.++|+++++|+ +|+++.+
T Consensus 65 ----~~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 65 ----GQRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred ----HHHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 367889999999999999999 8999987
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.68 E-value=7e-08 Score=75.38 Aligned_cols=67 Identities=25% Similarity=0.494 Sum_probs=55.8
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|+||++||++|+.+.+.|.++.++ . .++.++.++.+.. ..+.+.|++
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~--~~~~~~~i~~~~~------------------------~~~~~~~~v 61 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--Y--PKVKFVKVDVDEN------------------------PELAEEYGV 61 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH--C--CCceEEEEECCCC------------------------hhHHHhcCc
Confidence 38999999999999999999999999887 2 2488888877643 677889999
Q ss_pred CccceEEEecCCCCCCCcc
Q 013684 151 EGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~ 169 (438)
.++|++++++ +|.++
T Consensus 62 ~~~P~~~~~~----~g~~~ 76 (93)
T cd02947 62 RSIPTFLFFK----NGKEV 76 (93)
T ss_pred ccccEEEEEE----CCEEE
Confidence 9999999997 55544
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-07 Score=72.52 Aligned_cols=57 Identities=32% Similarity=0.607 Sum_probs=42.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+++||++||++|+...|.|.++ . ++++-|+.|.. .++++.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~----~------------~~~~~vd~~~~-----------------------~~l~~~~ 42 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV----E------------YTYVDVDTDEG-----------------------VELTAKH 42 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH----h------------heEEeeeCCCC-----------------------HHHHHHc
Confidence 6899999999999999987543 1 23455554433 6789999
Q ss_pred CcCceeeEEEECCCCcEEEc
Q 013684 320 DVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~~~ 339 (438)
+|.++||++ +|+.+.+
T Consensus 43 ~v~~~PT~~----~g~~~~~ 58 (75)
T PHA02125 43 HIRSLPTLV----NTSTLDR 58 (75)
T ss_pred CCceeCeEE----CCEEEEE
Confidence 999999976 5666544
|
|
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.1e-08 Score=70.91 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=49.9
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh
Q 013684 239 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 318 (438)
Q Consensus 239 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 318 (438)
-+..|+++|||+|+...+.|+++.+.. +++++..++++.+ .++.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-----------~~i~~~~id~~~~-----------------------~~l~~~ 47 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-----------PNISAEMIDAAEF-----------------------PDLADE 47 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-----------CceEEEEEEcccC-----------------------HhHHHH
Confidence 367899999999999999998886543 2578888877654 567889
Q ss_pred cCcCceeeEEEECCCCcEEEc
Q 013684 319 FDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 319 ~~v~~~P~~~lid~~G~i~~~ 339 (438)
||+.++|++++ +|+++..
T Consensus 48 ~~i~~vPti~i---~~~~~~~ 65 (67)
T cd02973 48 YGVMSVPAIVI---NGKVEFV 65 (67)
T ss_pred cCCcccCEEEE---CCEEEEe
Confidence 99999999764 5667654
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.3e-08 Score=98.00 Aligned_cols=67 Identities=18% Similarity=0.403 Sum_probs=56.2
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh-hc
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR-KF 148 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~ 148 (438)
++++++|+|||+||++|+.+.|.+.+++++++..+ +.++.|+.|.+. ..++. .|
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~--V~f~kVD~d~~~-----------------------~~la~~~~ 418 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG--VKVAKFRADGDQ-----------------------KEFAKQEL 418 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--eEEEEEECCCcc-----------------------hHHHHhhC
Confidence 57899999999999999999999999999997654 888877776221 45554 69
Q ss_pred CcCccceEEEecC
Q 013684 149 DIEGIPCLVVLQP 161 (438)
Q Consensus 149 ~v~~~P~~~lvd~ 161 (438)
+|.++||++++.+
T Consensus 419 ~I~~~PTil~f~~ 431 (457)
T PLN02309 419 QLGSFPTILLFPK 431 (457)
T ss_pred CCceeeEEEEEeC
Confidence 9999999999975
|
|
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-07 Score=76.89 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=47.8
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+.+.+||.|+|+| |+|.. .|++.+|+.++... ...+.|.-|.++...+ ..+.+
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~a-------a~~v~lakVd~~d~~~------------------~~~~~ 69 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASA-------TDDLLVAEVGIKDYGE------------------KLNME 69 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhh-------cCceEEEEEecccccc------------------hhhHH
Confidence 4578999999944 44443 36666666666432 1245666666643110 01478
Q ss_pred HHHhcCcC--ceeeEEEECCCCc
Q 013684 315 LTKYFDVQ--GIPCLVIIGPEGK 335 (438)
Q Consensus 315 l~~~~~v~--~~P~~~lid~~G~ 335 (438)
|+++|+|+ ++||+.|+ ++|.
T Consensus 70 L~~~y~I~~~gyPTl~lF-~~g~ 91 (116)
T cd03007 70 LGERYKLDKESYPVIYLF-HGGD 91 (116)
T ss_pred HHHHhCCCcCCCCEEEEE-eCCC
Confidence 99999999 99999999 5553
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=88.45 Aligned_cols=94 Identities=20% Similarity=0.350 Sum_probs=76.2
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
...|+|.|||.||+..+.+.|.+.+.++.++++ .++-++|+-++|++.+ ..+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e-------~P~~kvvwg~VDcd~e---------------------~~i 64 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE-------FPEGKVVWGKVDCDKE---------------------DDI 64 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHh-------CCCcceEEEEcccchh---------------------hHH
Confidence 468999999999999999999999999999987 5556788888887753 678
Q ss_pred HHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHh
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA 371 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~ 371 (438)
+.+|.|+.+||+-++ .+|.+..+.. ...+.+++|.+.|++.+
T Consensus 65 a~ky~I~KyPTlKvf-rnG~~~~rEY-------------Rg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 65 ADKYHINKYPTLKVF-RNGEMMKREY-------------RGQRSVEALIEFIEKQL 106 (375)
T ss_pred hhhhccccCceeeee-eccchhhhhh-------------ccchhHHHHHHHHHHHh
Confidence 999999999999999 8998887642 23344666666665543
|
|
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-07 Score=73.12 Aligned_cols=58 Identities=21% Similarity=0.394 Sum_probs=47.9
Q ss_pred EEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCcc
Q 013684 74 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI 153 (438)
Q Consensus 74 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~ 153 (438)
.+..||++||++|+...|.|.+++++++. ++.++.|+.+.+ .++.+.|++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~v~~v 54 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD---AVEVEYINVMEN------------------------PQKAMEYGIMAV 54 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC---ceEEEEEeCccC------------------------HHHHHHcCCccC
Confidence 47789999999999999999999998853 377777776644 456678999999
Q ss_pred ceEEE
Q 013684 154 PCLVV 158 (438)
Q Consensus 154 P~~~l 158 (438)
|++++
T Consensus 55 Pt~~~ 59 (82)
T TIGR00411 55 PAIVI 59 (82)
T ss_pred CEEEE
Confidence 99875
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.7e-07 Score=76.57 Aligned_cols=121 Identities=13% Similarity=0.135 Sum_probs=98.5
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
.+|+.+|+|++ +.+.. .+++.++.||..+|..+ +-..|.|......+++.+.++. +..|+.||+|
T Consensus 19 ~vGd~ap~ftl~~~dL~-~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~-----------~~~Vl~IS~D- 85 (158)
T COG2077 19 QVGDKAPDFTLVGKDLN-DVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG-----------NTVVLCISMD- 85 (158)
T ss_pred ccCCcCCceEEEcCccc-ceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC-----------CcEEEEEeCC-
Confidence 47899999999 99999 99999999987665555 5689999999999998887765 5789999998
Q ss_pred CHHHHHHHHhcCCCcccccCCc-hhHHHHHhcCc--Ccee-------eEEEECCCCcEEEcccchh
Q 013684 289 DQTSFESYFGTMPWLALPFGDP-TIKELTKYFDV--QGIP-------CLVIIGPEGKTVTKQGRNL 344 (438)
Q Consensus 289 ~~~~~~~~~~~~~~~~~p~~~d-~~~~l~~~~~v--~~~P-------~~~lid~~G~i~~~~~~~~ 344 (438)
-+-+.++|+...+.-++..+.| .+..+.+.||+ ...| +++++|.+|++++.+....
T Consensus 86 LPFAq~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~e 151 (158)
T COG2077 86 LPFAQKRFCGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVPE 151 (158)
T ss_pred ChhHHhhhhhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccch
Confidence 5678889999888666666666 56778999997 3444 7899999999999864333
|
|
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-07 Score=100.16 Aligned_cols=74 Identities=19% Similarity=0.372 Sum_probs=58.3
Q ss_pred cCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
.+||+|+|+|||+||++|+.+.+.. .++.++++ ++.++.++++++.+ ...++.
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~--------------------~~~~l~ 527 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNA--------------------EDVALL 527 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCCh--------------------hhHHHH
Confidence 3589999999999999999988864 56666663 37777777664311 126889
Q ss_pred hhcCcCccceEEEecCCCCCCCcc
Q 013684 146 RKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
++|++.++|+++++++ +|+++
T Consensus 528 ~~~~v~g~Pt~~~~~~---~G~~i 548 (571)
T PRK00293 528 KHYNVLGLPTILFFDA---QGQEI 548 (571)
T ss_pred HHcCCCCCCEEEEECC---CCCCc
Confidence 9999999999999999 99875
|
|
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=72.33 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=46.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcC
Q 013684 241 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 320 (438)
Q Consensus 241 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 320 (438)
|.||++|||+|+.+.|.+.++.+++... +++ +.+| +. ..+..||
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~----------~~~--~~v~-~~-----------------------~~a~~~~ 46 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGID----------AEF--EKVT-DM-----------------------NEILEAG 46 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCC----------eEE--EEeC-CH-----------------------HHHHHcC
Confidence 7899999999999999999999987633 455 4444 21 1256799
Q ss_pred cCceeeEEEECCCCcEEEc
Q 013684 321 VQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 321 v~~~P~~~lid~~G~i~~~ 339 (438)
+.++|++++ +|+++..
T Consensus 47 v~~vPti~i---~G~~~~~ 62 (76)
T TIGR00412 47 VTATPGVAV---DGELVIM 62 (76)
T ss_pred CCcCCEEEE---CCEEEEE
Confidence 999999888 8887743
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-07 Score=85.07 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=55.0
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++|+|.||++||++|+.+.|.|.+++.++. .+.++-|+++ .....|++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~----~vkFvkI~ad---------------------------~~~~~~~i 150 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP----DTKFVKIIST---------------------------QCIPNYPD 150 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC----CCEEEEEEhH---------------------------HhHhhCCC
Confidence 4699999999999999999999999999983 2666666443 12467999
Q ss_pred CccceEEEecCCCCCCCcccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
..+||++++. +|.++.+..
T Consensus 151 ~~lPTlliyk----~G~~v~~iv 169 (192)
T cd02988 151 KNLPTILVYR----NGDIVKQFI 169 (192)
T ss_pred CCCCEEEEEE----CCEEEEEEe
Confidence 9999999998 888776543
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-07 Score=72.82 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=58.8
Q ss_pred ccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 013684 231 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 310 (438)
Q Consensus 231 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 310 (438)
+.++++.+-+..|+++||++|....+.+.++.+.+. ++.+..++.+..
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-----------~i~~~~vd~~~~--------------------- 54 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP-----------NIEHEMIDGALF--------------------- 54 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-----------CceEEEEEhHhC---------------------
Confidence 346778889999999999999999998888886543 477888877644
Q ss_pred hhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 311 TIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 311 ~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.++++.|||.++|++++ +|+++..
T Consensus 55 --~e~a~~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 55 --QDEVEERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred --HHHHHHcCCccCCEEEE---CCEEEEe
Confidence 56889999999999974 6888876
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.4e-07 Score=84.12 Aligned_cols=85 Identities=25% Similarity=0.313 Sum_probs=66.6
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
..+.+++-|++|+.+.|++|+.+.|.|..+.+++ ++.|+.||+|...- -.||-...
T Consensus 116 ~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y------------g~~v~~vs~DG~~~-----------~~fp~~~~- 171 (215)
T PF13728_consen 116 KQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY------------GFSVIPVSLDGRPI-----------PSFPNPRP- 171 (215)
T ss_pred HHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh------------CCEEEEEecCCCCC-----------cCCCCCCC-
Confidence 3455678899999999999999999999999988 48999999996421 12333222
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+..+.+.+||..+|+++|+++++.....-
T Consensus 172 ~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv 200 (215)
T PF13728_consen 172 DPGQAKRLGVKVTPALFLVNPNTKKWYPV 200 (215)
T ss_pred CHHHHHHcCCCcCCEEEEEECCCCeEEEE
Confidence 46788899999999999999998555443
|
|
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.2e-07 Score=67.92 Aligned_cols=57 Identities=12% Similarity=0.240 Sum_probs=44.9
Q ss_pred EEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCcc
Q 013684 74 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI 153 (438)
Q Consensus 74 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~ 153 (438)
-+..|+++|||+|+...+.|.++.+.. .++++..+++|.. .++++.|++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~~------------------------~~l~~~~~i~~v 53 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAEF------------------------PDLADEYGVMSV 53 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEcccC------------------------HhHHHHcCCccc
Confidence 367899999999999999998886643 2377777766543 567888999999
Q ss_pred ceEEE
Q 013684 154 PCLVV 158 (438)
Q Consensus 154 P~~~l 158 (438)
|++++
T Consensus 54 Pti~i 58 (67)
T cd02973 54 PAIVI 58 (67)
T ss_pred CEEEE
Confidence 99865
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-07 Score=87.04 Aligned_cols=90 Identities=14% Similarity=0.257 Sum_probs=62.9
Q ss_pred CCCCCccCCCCCceeeccccCC-CEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHH
Q 013684 215 HDRGYLLGHPPDEKVPVSSLVG-KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 293 (438)
Q Consensus 215 ~~~~f~l~~~g~~~~~l~~~~g-k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~ 293 (438)
..|.+..|++.+ +.+.++ ..++|.||||||.+|+++.|.|.++--++++. ++-|---.+|...
T Consensus 25 kgpt~VeDLddk----FkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdi---------g~PikVGKlDaT~--- 88 (468)
T KOG4277|consen 25 KGPTAVEDLDDK----FKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDI---------GLPIKVGKLDATR--- 88 (468)
T ss_pred CCchhhhhhhHH----hhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhc---------CCceeeccccccc---
Confidence 344455455544 223333 58999999999999999999999998888865 3333323344432
Q ss_pred HHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 294 ESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 294 ~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
-..++..|||+|+||+.++ ++|-.+..
T Consensus 89 ------------------f~aiAnefgiqGYPTIk~~-kgd~a~dY 115 (468)
T KOG4277|consen 89 ------------------FPAIANEFGIQGYPTIKFF-KGDHAIDY 115 (468)
T ss_pred ------------------chhhHhhhccCCCceEEEe-cCCeeeec
Confidence 2678999999999999999 56555543
|
|
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.8e-07 Score=73.60 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=55.2
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
|+++++.|+++||++|..+.|.+.+++++++++ +.++.|+.|.. ..+++.|++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~------------------------~~~~~~~~i 64 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDF------------------------GRHLEYFGL 64 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhh------------------------HHHHHHcCC
Confidence 789999999999999999999999999999743 77777755532 678899999
Q ss_pred C--ccceEEEecC
Q 013684 151 E--GIPCLVVLQP 161 (438)
Q Consensus 151 ~--~~P~~~lvd~ 161 (438)
. .+|++++++.
T Consensus 65 ~~~~~P~~~~~~~ 77 (103)
T cd02982 65 KEEDLPVIAIINL 77 (103)
T ss_pred ChhhCCEEEEEec
Confidence 9 9999999985
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.5e-08 Score=60.67 Aligned_cols=29 Identities=38% Similarity=1.165 Sum_probs=14.3
Q ss_pred cccCccCCCCCc-eeEEcCCCCCCccCccc
Q 013684 399 FICCDCDEQGSG-WAYQCLECGYEVHPKCV 427 (438)
Q Consensus 399 ~~c~~C~~~~~~-w~~~c~~c~~~~~~~c~ 427 (438)
+.|+.|++.+.+ |.|+|.+|+|+||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 369999999999 99999999999999997
|
The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A. |
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.8e-07 Score=82.89 Aligned_cols=105 Identities=14% Similarity=0.206 Sum_probs=76.0
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
+.+.+++-|++||...|++|+++.|.++.+.++| ++.|+.||+|.... -.||....
T Consensus 146 ~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y------------gi~v~~VS~DG~~~-----------p~fp~~~~- 201 (256)
T TIGR02739 146 QQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY------------GISVIPISVDGTLI-----------PGLPNSRS- 201 (256)
T ss_pred HHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh------------CCeEEEEecCCCCC-----------CCCCCccC-
Confidence 3455668899999999999999999999999988 48999999996521 12333322
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhcc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN 373 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~ 373 (438)
+...++.+||..+|+++|++++.+....-+.+.+ . .++|.+.|...+..
T Consensus 202 d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G~i------S-------~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 202 DSGQAQHLGVKYFPALYLVNPKSQKMSPLAYGFI------S-------QDELKERILNVLTQ 250 (256)
T ss_pred ChHHHHhcCCccCceEEEEECCCCcEEEEeeccC------C-------HHHHHHHHHHHHhc
Confidence 4567889999999999999999665554332222 1 35666666555443
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=70.84 Aligned_cols=79 Identities=15% Similarity=0.223 Sum_probs=63.3
Q ss_pred CCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-------C
Q 013684 218 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-------D 289 (438)
Q Consensus 218 ~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-------~ 289 (438)
+|++ +.+|+ .++++.++||++||.-.|+.|+.-. ....|++|+++|+++ +++|+++.++. +
T Consensus 3 df~~~~~~G~-~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~---------gl~ILaFPcnqFg~QEp~~ 71 (108)
T PF00255_consen 3 DFSAKDIDGK-PVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK---------GLEILAFPCNQFGNQEPGS 71 (108)
T ss_dssp GSEEEBTTSS-EEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG---------TEEEEEEEBSTTTTTTSSC
T ss_pred ceeeeCCCCC-EECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC---------CeEEEeeehHHhccccCCC
Confidence 5777 99999 9999999999999999999999988 888999999999977 89999999863 3
Q ss_pred HHHHHHHHhcCCCccccc
Q 013684 290 QTSFESYFGTMPWLALPF 307 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~ 307 (438)
.++++.++.......||+
T Consensus 72 ~~ei~~~~~~~~~~~F~v 89 (108)
T PF00255_consen 72 NEEIKEFCKEKFGVTFPV 89 (108)
T ss_dssp HHHHHHHHCHCHT-SSEE
T ss_pred HHHHHHHHHhccCCcccc
Confidence 445555555432234443
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.2e-07 Score=86.07 Aligned_cols=76 Identities=21% Similarity=0.374 Sum_probs=59.1
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
...++|.|||+||++|++..|.+.++--++++.|..+.+ -.+|.+.- ..++..|+|
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikV--GKlDaT~f----------------------~aiAnefgi 98 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKV--GKLDATRF----------------------PAIANEFGI 98 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceee--cccccccc----------------------hhhHhhhcc
Confidence 358999999999999999999999999999887733333 23443322 688999999
Q ss_pred CccceEEEecCCCCCCCcccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+++||..++.. +-.+-++++
T Consensus 99 qGYPTIk~~kg---d~a~dYRG~ 118 (468)
T KOG4277|consen 99 QGYPTIKFFKG---DHAIDYRGG 118 (468)
T ss_pred CCCceEEEecC---CeeeecCCC
Confidence 99999999985 544555554
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.3e-06 Score=86.50 Aligned_cols=179 Identities=13% Similarity=0.150 Sum_probs=106.6
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+..+++.+.++.|+.+.|..|.+....|.++.+ +.++ +.+...+.+.+ .+++
T Consensus 361 ~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~---i~~~~~~~~~~------------------------~~~~ 412 (555)
T TIGR03143 361 FGRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEK---LNSEAVNRGEE------------------------PESE 412 (555)
T ss_pred HHhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCc---EEEEEeccccc------------------------hhhH
Confidence 345677788889998889888877666666553 3222 55544332221 6778
Q ss_pred hhcCcCccceEEEecCCCCCCC---cccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCCCccC
Q 013684 146 RKFDIEGIPCLVVLQPYDDKDD---ATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLG 222 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~~~~~G~---v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~f~l~ 222 (438)
+.|++...|++.+++. +|. +.+.+. |.=.+.-..+.+..... ...+.+
T Consensus 413 ~~~~v~~~P~~~i~~~---~~~~~~i~f~g~------------P~G~Ef~s~i~~i~~~~-----------~~~~~l--- 463 (555)
T TIGR03143 413 TLPKITKLPTVALLDD---DGNYTGLKFHGV------------PSGHELNSFILALYNAA-----------GPGQPL--- 463 (555)
T ss_pred hhcCCCcCCEEEEEeC---CCcccceEEEec------------CccHhHHHHHHHHHHhc-----------CCCCCC---
Confidence 8999999999999976 543 443332 11112222222222111 111111
Q ss_pred CCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCC
Q 013684 223 HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 302 (438)
Q Consensus 223 ~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 302 (438)
+.+..=.+..+.++..+-.|.+++||+|......+++++... +++..-.|.....
T Consensus 464 -~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-----------~~i~~~~i~~~~~------------- 518 (555)
T TIGR03143 464 -GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-----------PNVEAEMIDVSHF------------- 518 (555)
T ss_pred -CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-----------CCceEEEEECccc-------------
Confidence 111001123445566677888999999998777777666553 2456555555433
Q ss_pred cccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 303 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 303 ~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.++.++|+|.++|++++ ||+++..
T Consensus 519 ----------~~~~~~~~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 519 ----------PDLKDEYGIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred ----------HHHHHhCCceecCEEEE---CCEEEEe
Confidence 67889999999999775 5666655
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.1e-07 Score=69.54 Aligned_cols=72 Identities=10% Similarity=0.076 Sum_probs=56.4
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+.++++.+-+..|+++||++|+...+.+.++.+++. ++++..+++|.. .+++
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~~------------------------~e~a 58 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGALF------------------------QDEV 58 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHhC------------------------HHHH
Confidence 456788889999999999999999999988887652 366666655533 6788
Q ss_pred hhcCcCccceEEEecCCCCCCCcccc
Q 013684 146 RKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.|+|.++|++++ ||+++..
T Consensus 59 ~~~~V~~vPt~vi------dG~~~~~ 78 (89)
T cd03026 59 EERGIMSVPAIFL------NGELFGF 78 (89)
T ss_pred HHcCCccCCEEEE------CCEEEEe
Confidence 9999999999974 5555554
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.6e-07 Score=74.19 Aligned_cols=75 Identities=9% Similarity=0.133 Sum_probs=50.4
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHHH---HHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHH
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 143 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 143 (438)
..-++|+|+|+|++.||++|+.+...+- ++.+.+++ ++.+|.+..|.+.. .. .
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~td~-----------------~~---~- 74 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETTDK-----------------NL---S- 74 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccCCC-----------------Cc---C-
Confidence 3346899999999999999999987653 24444432 37666665553311 00 0
Q ss_pred HhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 144 LNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 144 l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..+ .++|+++++|+ +|+++.+-
T Consensus 75 ---~~g-~~vPtivFld~---~g~vi~~i 96 (130)
T cd02960 75 ---PDG-QYVPRIMFVDP---SLTVRADI 96 (130)
T ss_pred ---ccC-cccCeEEEECC---CCCCcccc
Confidence 022 47999999999 99888664
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.6e-07 Score=83.27 Aligned_cols=76 Identities=16% Similarity=0.301 Sum_probs=67.2
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
...|+|+|||+||+.++...|.+.+.++.+++.-.+-.+|+-.+|++.+ ..|+.+|.|
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e----------------------~~ia~ky~I 70 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE----------------------DDIADKYHI 70 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh----------------------hHHhhhhcc
Confidence 4699999999999999999999999999998876567788888998876 789999999
Q ss_pred CccceEEEecCCCCCCCccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..+||+-|+. +|.+..+.
T Consensus 71 ~KyPTlKvfr----nG~~~~rE 88 (375)
T KOG0912|consen 71 NKYPTLKVFR----NGEMMKRE 88 (375)
T ss_pred ccCceeeeee----ccchhhhh
Confidence 9999999998 88777643
|
|
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=81.26 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=64.4
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
+++.+++-|++||.+.||+|.++.|.++.+.+++ ++.|+.||+|.... -.||....
T Consensus 139 ~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y------------g~~v~~VS~DG~~~-----------p~fp~~~~- 194 (248)
T PRK13703 139 AKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY------------GLSVIPVSVDGVIN-----------PLLPDSRT- 194 (248)
T ss_pred HHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh------------CCeEEEEecCCCCC-----------CCCCCCcc-
Confidence 3444567899999999999999999999999988 48899999996421 23443322
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+...++.+||..+|+++|++++.+-...
T Consensus 195 d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 195 DQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred ChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 2445689999999999999999754444
|
|
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.8e-07 Score=68.27 Aligned_cols=47 Identities=30% Similarity=0.625 Sum_probs=33.9
Q ss_pred ccCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 233 SLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 233 ~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
..+||+++|+|++.||++|+.+...+ .++.+.+.+ ++..+.|..+..
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~----------~fv~v~vd~~~~ 63 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK----------NFVLVKVDVDDE 63 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH----------CSEEEEEETTTH
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC----------CEEEEEEEcCCC
Confidence 34589999999999999999988776 234443553 466676666543
|
... |
| >KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.4e-06 Score=70.66 Aligned_cols=118 Identities=15% Similarity=0.301 Sum_probs=92.7
Q ss_pred hhcCCCCCccCCCCCceeeccccCCCEEEEEEe--cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFS--ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l~~~g~~~~~l~~~~gk~vll~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|+.+|+|..++.-. .+++.++.|.-+.|.|. |...|.|..++..+.+++-+|..+ +++.++.|+|.-
T Consensus 8 lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR---------nvKlialS~d~v 77 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR---------NVKLIALSVDDV 77 (224)
T ss_pred ccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc---------CceEEEeehhhH
Confidence 688999999944444 59999999998888888 568999999999999999999866 899999999842
Q ss_pred --HHHH----HHHHhcCC-CcccccCCchhHHHHHhcCc------------CceeeEEEECCCCcEEEc
Q 013684 290 --QTSF----ESYFGTMP-WLALPFGDPTIKELTKYFDV------------QGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 290 --~~~~----~~~~~~~~-~~~~p~~~d~~~~l~~~~~v------------~~~P~~~lid~~G~i~~~ 339 (438)
...| +.|.+..+ -+.||+..|.+++++-.|+. ...-.+++||++.+++-.
T Consensus 78 esH~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs 146 (224)
T KOG0854|consen 78 ESHKDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLS 146 (224)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEE
Confidence 2233 33333222 37789999999999988876 124578999999998765
|
|
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-06 Score=66.98 Aligned_cols=50 Identities=32% Similarity=0.553 Sum_probs=38.0
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.||++||++|+...|.|.++. +.++-|+.|.. .++++.|+|.++|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~------------------------~~l~~~~~v~~~P 48 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEG------------------------VELTAKHHIRSLP 48 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCC------------------------HHHHHHcCCceeC
Confidence 78999999999999999886431 33443333322 6889999999999
Q ss_pred eEE
Q 013684 155 CLV 157 (438)
Q Consensus 155 ~~~ 157 (438)
|++
T Consensus 49 T~~ 51 (75)
T PHA02125 49 TLV 51 (75)
T ss_pred eEE
Confidence 987
|
|
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-06 Score=87.71 Aligned_cols=68 Identities=24% Similarity=0.371 Sum_probs=54.7
Q ss_pred CEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC
Q 013684 72 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 151 (438)
Q Consensus 72 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 151 (438)
+..+|.||++|||+|+.+.|.++++++.+..-..-+.|..| |+-. . .+..+|+.|+|.
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaV--dCA~-------------------~-~N~~lCRef~V~ 115 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAV--DCAD-------------------E-ENVKLCREFSVS 115 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEe--eccc-------------------h-hhhhhHhhcCCC
Confidence 47899999999999999999999999999887432344444 4321 1 127999999999
Q ss_pred ccceEEEecC
Q 013684 152 GIPCLVVLQP 161 (438)
Q Consensus 152 ~~P~~~lvd~ 161 (438)
.+|++..+.+
T Consensus 116 ~~Ptlryf~~ 125 (606)
T KOG1731|consen 116 GYPTLRYFPP 125 (606)
T ss_pred CCceeeecCC
Confidence 9999999997
|
|
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-06 Score=66.40 Aligned_cols=54 Identities=19% Similarity=0.111 Sum_probs=41.7
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
-|.||++|||+|+.+.|.+.++.+++.. .++++-| | + ...+..|++.++|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~---~~~~~~v--~-~------------------------~~~a~~~~v~~vP 51 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI---DAEFEKV--T-D------------------------MNEILEAGVTATP 51 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC---CeEEEEe--C-C------------------------HHHHHHcCCCcCC
Confidence 3789999999999999999999999743 2555544 3 1 1124569999999
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
++++
T Consensus 52 ti~i 55 (76)
T TIGR00412 52 GVAV 55 (76)
T ss_pred EEEE
Confidence 9988
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.9e-06 Score=71.31 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=98.0
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEE-EEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTA-LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vl-l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
..+|+.+|+|+ +.+.+.+.+++.++.||..+ .-|-+..-|.|......+++.+.++. +..++.||+|
T Consensus 18 ~~vGd~ap~ft--------l~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~----~~~Vl~IS~D 85 (158)
T COG2077 18 PQVGDKAPDFT--------LVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG----NTVVLCISMD 85 (158)
T ss_pred CccCCcCCceE--------EEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC----CcEEEEEeCC
Confidence 35899999999 89999999999999998654 45558888999999999999888873 4889999999
Q ss_pred CCHHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcC--c-------cceEEEecCCCCCCCcccccchhHHhh
Q 013684 116 EDLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIE--G-------IPCLVVLQPYDDKDDATLHDGVELIYK 179 (438)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~--~-------~P~~~lvd~~~~~G~v~~~~~~~~i~~ 179 (438)
-+.+..+|....+...+. .+|- ....+.+.||+. . -.+.+++|. +|++++......|.+
T Consensus 86 -LPFAq~RfC~aeGi~nv~~lSd~-r~~~Fge~yGv~I~egpL~gLlARaV~V~De---~g~V~y~elv~eit~ 154 (158)
T COG2077 86 -LPFAQKRFCGAEGIENVITLSDF-RDRAFGENYGVLINEGPLAGLLARAVFVLDE---NGKVTYSELVPEITE 154 (158)
T ss_pred -ChhHHhhhhhhcCcccceEhhhh-hhhhhhHhhCEEeccccccCeeeeEEEEEcC---CCcEEEEEccchhhc
Confidence 556678888887765433 3222 236788889873 2 348899998 999999887665544
|
|
| >KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.7e-06 Score=74.25 Aligned_cols=122 Identities=19% Similarity=0.229 Sum_probs=90.6
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC-
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE- 116 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~- 116 (438)
+..++|+|+ +..++ +..-+.++|++++||+|+++|| ..+--.|..++-.+...+++|+..+ .+|+++|+|.
T Consensus 6 ~~~p~p~fk---~~aVV--dG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n--~eVig~S~DS~ 78 (196)
T KOG0852|consen 6 VFKPAPDFK---GTAVV--DGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN--TEVLGISTDSV 78 (196)
T ss_pred cCCCCCCcc---eeEEE--cCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC--CeEEEEeccch
Confidence 445667777 44444 5666789999999999999999 4555689999999999999999975 9999999995
Q ss_pred -CHHHHHHhHhcC---CcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccc
Q 013684 117 -DLNAFNNYRACM---PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 117 -~~~~~~~~~~~~---~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.-+|...-++. +-+.+|. -.+.+.+|++.||+- .+-.+++||+ +|.+...
T Consensus 79 fshlAW~ntprk~gGlg~~~iPl-lsD~~~~IsrdyGvL~~~~G~~lRglfIId~---~gi~R~i 139 (196)
T KOG0852|consen 79 FSHLAWINTPRKQGGLGPLNIPL-LSDLNHEISRDYGVLKEDEGIALRGLFIIDP---DGILRQI 139 (196)
T ss_pred hhhhhHhcCchhhCCcCccccce-eeccchhhHHhcCceecCCCcceeeeEEEcc---ccceEEe
Confidence 344455444433 2233554 333448999999983 5678999999 9877653
|
|
| >PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.5e-07 Score=55.61 Aligned_cols=29 Identities=34% Similarity=0.969 Sum_probs=27.6
Q ss_pred cccCccCCCCCce-eEEcCCCCCCccCccc
Q 013684 399 FICCDCDEQGSGW-AYQCLECGYEVHPKCV 427 (438)
Q Consensus 399 ~~c~~C~~~~~~w-~~~c~~c~~~~~~~c~ 427 (438)
++|+-|.+...+- .|+|.+|+|+||++||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 5899999999999 9999999999999997
|
The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins. |
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.9e-06 Score=66.65 Aligned_cols=44 Identities=36% Similarity=0.669 Sum_probs=33.3
Q ss_pred cCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecC
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D 115 (438)
-+||+++|+|+++||++|+.+...+ .++.+.+.. ++..+.|+++
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~---~fv~v~vd~~ 61 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK---NFVLVKVDVD 61 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH---CSEEEEEETT
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC---CEEEEEEEcC
Confidence 3689999999999999999998876 334443443 3777777665
|
... |
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-06 Score=71.87 Aligned_cols=69 Identities=12% Similarity=0.198 Sum_probs=45.9
Q ss_pred CCCEEEEEEec--cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhh
Q 013684 70 EGKVTALYFSA--NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 147 (438)
Q Consensus 70 ~gk~vll~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 147 (438)
+.+.+||.|+| +||+ + .|.+.+++.++.....++.|.-|+.|+- ......+|+++
T Consensus 17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~-------------------~~~~~~~L~~~ 73 (116)
T cd03007 17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDY-------------------GEKLNMELGER 73 (116)
T ss_pred cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEecccc-------------------cchhhHHHHHH
Confidence 56899999999 6666 3 3555555555544322355666655421 01112789999
Q ss_pred cCcC--ccceEEEecC
Q 013684 148 FDIE--GIPCLVVLQP 161 (438)
Q Consensus 148 ~~v~--~~P~~~lvd~ 161 (438)
|+|+ ++||+.++..
T Consensus 74 y~I~~~gyPTl~lF~~ 89 (116)
T cd03007 74 YKLDKESYPVIYLFHG 89 (116)
T ss_pred hCCCcCCCCEEEEEeC
Confidence 9999 9999999984
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.3e-06 Score=67.90 Aligned_cols=73 Identities=16% Similarity=0.342 Sum_probs=52.7
Q ss_pred ccccCCCEEEEEEecCCChhhhhhhHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 231 VSSLVGKTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 231 l~~~~gk~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
.+.-.+|.++|+|+++||++|..+....- ++.+.+.. ++.++.++++..+
T Consensus 22 ~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~----------~fv~~~~dv~~~e----------------- 74 (122)
T smart00594 22 EASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE----------NFIFWQVDVDTSE----------------- 74 (122)
T ss_pred HHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc----------CEEEEEecCCChh-----------------
Confidence 34446899999999999999999776532 33444432 3445555544332
Q ss_pred CCchhHHHHHhcCcCceeeEEEECCCC
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGPEG 334 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~~G 334 (438)
...+++.|++.++|+++++|++|
T Consensus 75 ----g~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 75 ----GQRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred ----HHHHHHhcCcCCCCEEEEEecCC
Confidence 36789999999999999999998
|
|
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.9e-06 Score=76.01 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=92.7
Q ss_pred hhhcCCCCCcc-CCCCCce-eeccccC--CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe-
Q 013684 211 LLTNHDRGYLL-GHPPDEK-VPVSSLV--GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS- 285 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~-~~l~~~~--gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is- 285 (438)
.+|..+||..+ +.+|+ . .++-++. +++++|+|.+-.||+-+.-.+.++++.++|.+.. ++-+|.|.
T Consensus 74 ~~G~~APns~vv~l~g~-~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~a--------dFl~VYI~E 144 (237)
T PF00837_consen 74 KLGGPAPNSPVVTLDGQ-RSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVA--------DFLIVYIEE 144 (237)
T ss_pred eCCCCCCCCceEeeCCC-cceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhh--------heehhhHhh
Confidence 46899999999 99999 6 8888875 5899999999999999999999999999999751 34444442
Q ss_pred ---cC--------------CC-HH--HHHHHHhcCCCcccccCCc-hhHHHHHhcCcCceeeEEEECCCCcEEEcccchh
Q 013684 286 ---TD--------------RD-QT--SFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNL 344 (438)
Q Consensus 286 ---~d--------------~~-~~--~~~~~~~~~~~~~~p~~~d-~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 344 (438)
.| .+ ++ ...+.+.+.. ...|+..| .++...++||..-- .+|+| .+|++++.+|
T Consensus 145 AHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~YgA~Pe-RlyIi-~~gkv~Y~Gg--- 218 (237)
T PF00837_consen 145 AHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYGALPE-RLYII-QDGKVVYKGG--- 218 (237)
T ss_pred hCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhCCCcc-eEEEE-ECCEEEEeCC---
Confidence 11 01 11 1222222222 46676555 67788888986433 45666 6999999974
Q ss_pred hhhccccCCCCCHHHHHHHH
Q 013684 345 INLYQENAYPFTEAKLEFLE 364 (438)
Q Consensus 345 ~~~~g~~~~~~~~~~~~~L~ 364 (438)
.++|.+..+.+++..
T Consensus 219 -----~GP~~y~~~e~r~~L 233 (237)
T PF00837_consen 219 -----PGPFGYSPEELREWL 233 (237)
T ss_pred -----CCCCcCCHHHHHHHH
Confidence 444566665555443
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.3e-06 Score=70.59 Aligned_cols=111 Identities=18% Similarity=0.120 Sum_probs=81.0
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-------CCHHHHHHhHh-c
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNAFNNYRA-C 127 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-------~~~~~~~~~~~-~ 127 (438)
.++.+|+.++|++++||++||--.|+-|+.-. ....|..+|++|+++| ++|+++..+ .+.++..++.+ +
T Consensus 10 ~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~fC~~~ 86 (162)
T COG0386 10 VKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAKFCQLN 86 (162)
T ss_pred eeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHHHHHhc
Confidence 78999999999999999999999999999766 5667999999999998 999999874 36677777776 4
Q ss_pred CCcccccCCC---------hHHHHHHhhhc-------CcCccceEEEecCCCCCCCcccccc
Q 013684 128 MPWLAVPYSD---------LETKKALNRKF-------DIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 128 ~~~~~~~~~d---------~~~~~~l~~~~-------~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++..+.-+.. +-. +-|.... .|..==+-+|||+ +|+++.|..
T Consensus 87 YgVtFp~f~Ki~VnG~~a~PLy-~~L~~~~~g~~~~~~IkWNFtKFLvdr---~G~VV~Rf~ 144 (162)
T COG0386 87 YGVTFPMFSKIDVNGKNAHPLY-KYLKEQKPGKLGGKDIKWNFTKFLVDR---DGNVVKRFS 144 (162)
T ss_pred cCceeeeeeEEeecCCCCCcHH-HHHHhcCCCCccCCccceeeEEEEEcC---CCcEEEeeC
Confidence 4432222210 001 2222222 2233347789999 999998865
|
|
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.8e-06 Score=67.79 Aligned_cols=79 Identities=13% Similarity=0.160 Sum_probs=56.3
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHH-H--HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHH
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGV-L--VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK 142 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~ 142 (438)
.+.-++|+++|+|+++||++|+.+... | .++.+.+++ ++.++.++++.... .
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~~~e~----------------------~ 66 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDIDSSEG----------------------Q 66 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCCCccH----------------------H
Confidence 344468999999999999999998764 3 235555543 26666655543211 6
Q ss_pred HHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 143 ALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 143 ~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
.++..|++.++|+++++++ .+|+++.+
T Consensus 67 ~~~~~~~~~~~P~~~~i~~--~~g~~l~~ 93 (114)
T cd02958 67 RFLQSYKVDKYPHIAIIDP--RTGEVLKV 93 (114)
T ss_pred HHHHHhCccCCCeEEEEeC--ccCcEeEE
Confidence 7889999999999999997 24776654
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.5e-06 Score=70.99 Aligned_cols=78 Identities=22% Similarity=0.426 Sum_probs=47.2
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
+.+..+..++.|..+|||.|....|.+.++++... ++++-.|..|.+.+.+.++
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-----------~i~~~~i~rd~~~el~~~~--------------- 90 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-----------NIEVRIILRDENKELMDQY--------------- 90 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-----------TEEEEEE-HHHHHHHTTTT---------------
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-----------CCeEEEEEecCChhHHHHH---------------
Confidence 34455678899999999999999999999998743 4677777666443221111
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+ ..|...+|+++++|.+|+.+.+.
T Consensus 91 ---l--t~g~~~IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 91 ---L--TNGGRSIPTFIFLDKDGKELGRW 114 (129)
T ss_dssp ---T--T-SS--SSEEEEE-TT--EEEEE
T ss_pred ---H--hCCCeecCEEEEEcCCCCEeEEE
Confidence 1 15788999999999999999874
|
|
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.1e-06 Score=86.56 Aligned_cols=70 Identities=23% Similarity=0.423 Sum_probs=57.2
Q ss_pred CEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 013684 237 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 316 (438)
Q Consensus 237 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 316 (438)
+..+|.||++|||+|++++|.++++++.+..- .+=+.|..|++-.+. +..+|
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W-------~~vv~vaaVdCA~~~---------------------N~~lC 109 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKW-------RPVVRVAAVDCADEE---------------------NVKLC 109 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcc-------cceeEEEEeeccchh---------------------hhhhH
Confidence 57899999999999999999999999988764 234556666654332 58899
Q ss_pred HhcCcCceeeEEEECCCC
Q 013684 317 KYFDVQGIPCLVIIGPEG 334 (438)
Q Consensus 317 ~~~~v~~~P~~~lid~~G 334 (438)
+.|+|.++|++.++.++-
T Consensus 110 Ref~V~~~Ptlryf~~~~ 127 (606)
T KOG1731|consen 110 REFSVSGYPTLRYFPPDS 127 (606)
T ss_pred hhcCCCCCceeeecCCcc
Confidence 999999999999997773
|
|
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.4e-06 Score=76.25 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=64.1
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+..+.+++-|++|+.+.|++|..+.|.|..+.+++ ++.|+.||+|.... ..+|-.-. ...++
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-----g~~v~~vs~DG~~~-----------~~fp~~~~--~~g~~ 176 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-----GFSVIPVSLDGRPI-----------PSFPNPRP--DPGQA 176 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-----CCEEEEEecCCCCC-----------cCCCCCCC--CHHHH
Confidence 45666789999999999999999999999999997 39999999995422 11221111 26788
Q ss_pred hhcCcCccceEEEecCCCCCC
Q 013684 146 RKFDIEGIPCLVVLQPYDDKD 166 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~~~~~G 166 (438)
+.++|..+|+++||++ ++
T Consensus 177 ~~l~v~~~Pal~Lv~~---~~ 194 (215)
T PF13728_consen 177 KRLGVKVTPALFLVNP---NT 194 (215)
T ss_pred HHcCCCcCCEEEEEEC---CC
Confidence 8999999999999998 66
|
|
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-05 Score=65.19 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=53.8
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
..+.+|+.++|+.++||++||.=.|+-|+.-. ....|++++++++++| ++|+++..+.
T Consensus 6 ~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcnq 63 (108)
T PF00255_consen 6 AKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCNQ 63 (108)
T ss_dssp EEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBST
T ss_pred eeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehHH
Confidence 67999999999999999999999999999888 8889999999999987 9999998763
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=2e-05 Score=65.84 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=52.2
Q ss_pred cCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
-++|.++|+|+++||++|+.+.... .++.+.+++ ++.++.++++.... ..++
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~eg----------------------~~l~ 79 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSEG----------------------QRVS 79 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChhH----------------------HHHH
Confidence 4689999999999999999987653 224445533 36666565443321 6889
Q ss_pred hhcCcCccceEEEecCCCCCC
Q 013684 146 RKFDIEGIPCLVVLQPYDDKD 166 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~~~~~G 166 (438)
+.|++.++|+++++++ +|
T Consensus 80 ~~~~~~~~P~~~~l~~---~~ 97 (122)
T smart00594 80 QFYKLDSFPYVAIVDP---RT 97 (122)
T ss_pred HhcCcCCCCEEEEEec---CC
Confidence 9999999999999998 65
|
|
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.6e-05 Score=64.36 Aligned_cols=67 Identities=37% Similarity=0.603 Sum_probs=52.3
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
....++++++.||++||++|+...|.+.++.+++.. .+.++.++....
T Consensus 28 ~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~i~~~~~---------------------- 75 (127)
T COG0526 28 SELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG----------DVEVVAVNVDDE---------------------- 75 (127)
T ss_pred hhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC----------CcEEEEEECCCC----------------------
Confidence 334488999999999999999999999999998863 367888887511
Q ss_pred hHHHHHhcC--cCceeeEEEE
Q 013684 312 IKELTKYFD--VQGIPCLVII 330 (438)
Q Consensus 312 ~~~l~~~~~--v~~~P~~~li 330 (438)
...+...|+ +..+|+++++
T Consensus 76 ~~~~~~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 76 NPDLAAEFGVAVRSIPTLLLF 96 (127)
T ss_pred ChHHHHHHhhhhccCCeEEEE
Confidence 255666677 7888988765
|
|
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.1e-05 Score=67.19 Aligned_cols=87 Identities=17% Similarity=0.337 Sum_probs=48.4
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHH-H--HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH-HHHHHHHhcCCCc
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPK-L--LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ-TSFESYFGTMPWL 303 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~-~~~~~~~~~~~~~ 303 (438)
.+..+.-.+|+++|.++++||.+|+.+... + .++++-+.++ +|.|.+|.++ .++...+..
T Consensus 29 a~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~------------FI~VkvDree~Pdid~~y~~---- 92 (163)
T PF03190_consen 29 ALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN------------FIPVKVDREERPDIDKIYMN---- 92 (163)
T ss_dssp HHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-------------EEEEEETTT-HHHHHHHHH----
T ss_pred HHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC------------EEEEEeccccCccHHHHHHH----
Confidence 344455568999999999999999997753 2 2455555544 6777776543 222222211
Q ss_pred ccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 304 ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 304 ~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
......|..|+|+.++++++|+.+...
T Consensus 93 ----------~~~~~~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 93 ----------AVQAMSGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp ----------HHHHHHS---SSEEEEE-TTS-EEEEE
T ss_pred ----------HHHHhcCCCCCCceEEECCCCCeeeee
Confidence 111223788999999999999998753
|
; PDB: 3IRA_A. |
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.5e-05 Score=55.67 Aligned_cols=63 Identities=29% Similarity=0.548 Sum_probs=48.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.||++||++|....+.+.++ .+.. .++.++.++++...+.. .....+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~~--------------------~~~~~~ 49 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLN---------KGVKFEAVDVDEDPALE--------------------KELKRY 49 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhC---------CCcEEEEEEcCCChHHh--------------------hHHHhC
Confidence 4789999999999999999988 3332 37899999988664211 113578
Q ss_pred CcCceeeEEEECCC
Q 013684 320 DVQGIPCLVIIGPE 333 (438)
Q Consensus 320 ~v~~~P~~~lid~~ 333 (438)
++..+|++++++++
T Consensus 50 ~~~~~P~~~~~~~~ 63 (69)
T cd01659 50 GVGGVPTLVVFGPG 63 (69)
T ss_pred CCccccEEEEEeCC
Confidence 89999999999766
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0001 Score=62.27 Aligned_cols=87 Identities=25% Similarity=0.456 Sum_probs=62.9
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 308 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 308 (438)
....+|+.++.|..+.|++|.++-..+. ++.+-++. ++.++.+....+.. ..+-.+
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~----------hf~~~~l~i~~skp-----------v~f~~g 96 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE----------HFSAYYLNISYSKP-----------VLFKVG 96 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh----------CeEEEEEEeccCcc-----------eEeecC
Confidence 4456899999999999999999876654 45555554 47777777653321 111111
Q ss_pred C----chhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 309 D----PTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 309 ~----d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
. -...++++.|+|+++|+++++|.+|+.+..
T Consensus 97 ~kee~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 97 DKEEKMSTEELAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred ceeeeecHHHHHHHhccccCceEEEEcCCCCEEEe
Confidence 1 134699999999999999999999988765
|
|
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.7e-05 Score=62.99 Aligned_cols=70 Identities=36% Similarity=0.644 Sum_probs=53.3
Q ss_pred EeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-CCHHHHHHhHhcCCcccccCCChHHHH
Q 013684 64 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-EDLNAFNNYRACMPWLAVPYSDLETKK 142 (438)
Q Consensus 64 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-~~~~~~~~~~~~~~~~~~~~~d~~~~~ 142 (438)
.......++++++.||++||++|+.+.|.+.++.+++.. .+.++.++.. .. .
T Consensus 25 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~~------------------------~ 77 (127)
T COG0526 25 LSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDEN------------------------P 77 (127)
T ss_pred eehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCCC------------------------h
Confidence 344444589999999999999999999999999999865 2677777664 12 4
Q ss_pred HHhhhcC--cCccceEEEec
Q 013684 143 ALNRKFD--IEGIPCLVVLQ 160 (438)
Q Consensus 143 ~l~~~~~--v~~~P~~~lvd 160 (438)
.+...|+ +..+|+++++.
T Consensus 78 ~~~~~~~~~~~~~p~~~~~~ 97 (127)
T COG0526 78 DLAAEFGVAVRSIPTLLLFK 97 (127)
T ss_pred HHHHHHhhhhccCCeEEEEe
Confidence 5555566 77789887655
|
|
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.6e-05 Score=73.11 Aligned_cols=78 Identities=18% Similarity=0.311 Sum_probs=62.4
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+..+.+++-|++||.+.|++|..+.|.|+.+.+++ ++.|+.||+|.... ..+|-.-.+ ..++
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y-----gi~v~~VS~DG~~~-----------p~fp~~~~d--~gqa 206 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-----GISVIPISVDGTLI-----------PGLPNSRSD--SGQA 206 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCC-----------CCCCCccCC--hHHH
Confidence 45556789999999999999999999999999997 39999999996522 112221122 6778
Q ss_pred hhcCcCccceEEEecC
Q 013684 146 RKFDIEGIPCLVVLQP 161 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~ 161 (438)
+.++|..+|+++||++
T Consensus 207 ~~l~v~~~Pal~Lv~~ 222 (256)
T TIGR02739 207 QHLGVKYFPALYLVNP 222 (256)
T ss_pred HhcCCccCceEEEEEC
Confidence 8999999999999998
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=2e-05 Score=66.42 Aligned_cols=78 Identities=21% Similarity=0.314 Sum_probs=47.9
Q ss_pred eccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHH
Q 013684 65 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 144 (438)
Q Consensus 65 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 144 (438)
.+.....+..++.|..+|||.|+...|.|.++++... ++++-.+..|+.. ++
T Consensus 35 ~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~------------------------el 86 (129)
T PF14595_consen 35 KLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENK------------------------EL 86 (129)
T ss_dssp HHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHH------------------------HH
T ss_pred HHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCCh------------------------hH
Confidence 3455566788999999999999999999999999853 3666666555443 33
Q ss_pred hhh---cCcCccceEEEecCCCCCCCcccccc
Q 013684 145 NRK---FDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 145 ~~~---~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
... .+...+|+++++|. +|+.+.+-+
T Consensus 87 ~~~~lt~g~~~IP~~I~~d~---~~~~lg~wg 115 (129)
T PF14595_consen 87 MDQYLTNGGRSIPTFIFLDK---DGKELGRWG 115 (129)
T ss_dssp TTTTTT-SS--SSEEEEE-T---T--EEEEEE
T ss_pred HHHHHhCCCeecCEEEEEcC---CCCEeEEEc
Confidence 333 46789999999998 888776543
|
|
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.9e-05 Score=72.33 Aligned_cols=78 Identities=21% Similarity=0.385 Sum_probs=61.4
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+..+.+++-|++||.+.||+|..+.|.|+.+.+++ ++.|+.||+|.... ..+|..-.+ ...+
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-----g~~v~~VS~DG~~~-----------p~fp~~~~d--~gqa 199 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-----GLSVIPVSVDGVIN-----------PLLPDSRTD--QGQA 199 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCC-----------CCCCCCccC--hhHH
Confidence 45555689999999999999999999999999997 38999999996422 112221122 4556
Q ss_pred hhcCcCccceEEEecC
Q 013684 146 RKFDIEGIPCLVVLQP 161 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~ 161 (438)
+.++|..+|+++||++
T Consensus 200 ~~l~v~~~PAl~Lv~~ 215 (248)
T PRK13703 200 QRLGVKYFPALMLVDP 215 (248)
T ss_pred HhcCCcccceEEEEEC
Confidence 8899999999999998
|
|
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.2e-05 Score=52.90 Aligned_cols=62 Identities=31% Similarity=0.576 Sum_probs=47.6
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.||++||++|+...+.+.++ +.... ++.++.++.+..... ......+++..+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~P 55 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNK--GVKFEAVDVDEDPAL---------------------EKELKRYGVGGVP 55 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCC--CcEEEEEEcCCChHH---------------------hhHHHhCCCcccc
Confidence 5789999999999999999998 33333 489999988765331 1114568899999
Q ss_pred eEEEecC
Q 013684 155 CLVVLQP 161 (438)
Q Consensus 155 ~~~lvd~ 161 (438)
++++++.
T Consensus 56 ~~~~~~~ 62 (69)
T cd01659 56 TLVVFGP 62 (69)
T ss_pred EEEEEeC
Confidence 9999985
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00026 Score=59.42 Aligned_cols=90 Identities=9% Similarity=0.068 Sum_probs=64.2
Q ss_pred EEEEEEecC--CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 238 TVGLYFSAR--WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 238 ~vll~F~a~--wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
..+|+|-+. -+|-+.-..-.|.++.++|.+. ++.++.|++|.+ ..+
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~---------~v~~akVDiD~~-----------------------~~L 83 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY---------TWQVAIADLEQS-----------------------EAI 83 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC---------ceEEEEEECCCC-----------------------HHH
Confidence 344444432 4666777777888999998633 478888888866 789
Q ss_pred HHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccC
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL 374 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~ 374 (438)
+..|||.++||++|+ ++|+.+.+. .|... -+++.+.|++.+...
T Consensus 84 A~~fgV~siPTLl~F-kdGk~v~~i-------~G~~~-------k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 84 GDRFGVFRFPATLVF-TGGNYRGVL-------NGIHP-------WAELINLMRGLVEPQ 127 (132)
T ss_pred HHHcCCccCCEEEEE-ECCEEEEEE-------eCcCC-------HHHHHHHHHHHhcCc
Confidence 999999999999999 999999873 34222 255666666655543
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.78 E-value=3e-05 Score=79.29 Aligned_cols=74 Identities=18% Similarity=0.312 Sum_probs=54.5
Q ss_pred CCCEEEEEEeccCCccchhhHHHHH-HHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhc
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLV-DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 148 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~-~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 148 (438)
++|+|+|+|||+||-.|+.+.+..- +....++-.+ +..+-+++..+ ++.. .++.++|
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~--~vlLqaDvT~~-------------------~p~~-~~lLk~~ 530 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD--VVLLQADVTAN-------------------DPAI-TALLKRL 530 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC--eEEEEeeecCC-------------------CHHH-HHHHHHc
Confidence 4569999999999999999987554 5555555443 55555544322 3332 7889999
Q ss_pred CcCccceEEEecCCCCCCCc
Q 013684 149 DIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 149 ~v~~~P~~~lvd~~~~~G~v 168 (438)
++-+.|+++++++ +|.-
T Consensus 531 ~~~G~P~~~ff~~---~g~e 547 (569)
T COG4232 531 GVFGVPTYLFFGP---QGSE 547 (569)
T ss_pred CCCCCCEEEEECC---CCCc
Confidence 9999999999998 7743
|
|
| >KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=6e-05 Score=67.18 Aligned_cols=93 Identities=19% Similarity=0.371 Sum_probs=70.2
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+.+++++.|+|.|.|-|..+.|.+.++..+|... ++.+-.|.+..= ..
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~---------~lkFGkvDiGrf-----------------------pd 190 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN---------LLKFGKVDIGRF-----------------------PD 190 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCC---------CCcccceeeccC-----------------------cC
Confidence 4468999999999999999999999999999854 677777776543 33
Q ss_pred HHHhcCc------CceeeEEEECCCCcEEEcccchhhhhc-cccCCCCCHHHHHH
Q 013684 315 LTKYFDV------QGIPCLVIIGPEGKTVTKQGRNLINLY-QENAYPFTEAKLEF 362 (438)
Q Consensus 315 l~~~~~v------~~~P~~~lid~~G~i~~~~~~~~~~~~-g~~~~~~~~~~~~~ 362 (438)
++.+|+| +..||++++ ++|+.+.|. ..+..- -+..|+++++.+-.
T Consensus 191 ~a~kfris~s~~srQLPT~ilF-q~gkE~~Rr--P~vd~~gra~s~~fSeenv~~ 242 (265)
T KOG0914|consen 191 VAAKFRISLSPGSRQLPTYILF-QKGKEVSRR--PDVDVKGRAVSFPFSEENVCQ 242 (265)
T ss_pred hHHheeeccCcccccCCeEEEE-ccchhhhcC--ccccccCCcccccccHHHHHH
Confidence 4566666 578999999 888877663 333333 34678888877643
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.67 E-value=7.4e-05 Score=76.51 Aligned_cols=76 Identities=25% Similarity=0.473 Sum_probs=55.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHH-HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLL-SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~-~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
++|+|+|+|||.||-.|+.+.+..- +.....+- .++..+-++...+. +.+.
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~---------~~~vlLqaDvT~~~-------------------p~~~ 524 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL---------QDVVLLQADVTAND-------------------PAIT 524 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc---------CCeEEEEeeecCCC-------------------HHHH
Confidence 4569999999999999999887644 33333332 25555555543332 2357
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEE
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
++.++||+-+.|++++++++|+...
T Consensus 525 ~lLk~~~~~G~P~~~ff~~~g~e~~ 549 (569)
T COG4232 525 ALLKRLGVFGVPTYLFFGPQGSEPE 549 (569)
T ss_pred HHHHHcCCCCCCEEEEECCCCCcCc
Confidence 8889999999999999999997644
|
|
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00035 Score=51.95 Aligned_cols=59 Identities=25% Similarity=0.499 Sum_probs=42.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+..|+++|||+|+...+.|.+ . ++.+..++++.+.+. ..++.+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~---------~i~~~~vdi~~~~~~-------------------~~~~~~~~ 46 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K---------GIAFEEIDVEKDSAA-------------------REEVLKVL 46 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C---------CCeEEEEeccCCHHH-------------------HHHHHHHh
Confidence 457899999999998776653 2 467788888765432 14466778
Q ss_pred CcCceeeEEEECCCCcE
Q 013684 320 DVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i 336 (438)
++.++|++++- |++
T Consensus 47 ~~~~vP~~~~~---~~~ 60 (74)
T TIGR02196 47 GQRGVPVIVIG---HKI 60 (74)
T ss_pred CCCcccEEEEC---CEE
Confidence 99999998763 555
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00025 Score=58.44 Aligned_cols=78 Identities=22% Similarity=0.477 Sum_probs=49.3
Q ss_pred CCCEEEEEEecC-------CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 235 VGKTVGLYFSAR-------WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 235 ~gk~vll~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
.|++++|+|+++ |||.|....|.+.+......+ +..+|.+.+. +...|+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~----------~~~lv~v~VG-~r~~Wkd------------ 74 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE----------NARLVYVEVG-DRPEWKD------------ 74 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST----------TEEEEEEE----HHHHC-------------
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC----------CceEEEEEcC-CHHHhCC------------
Confidence 467788888853 999999999999988877443 4778888775 4344432
Q ss_pred CCchhHHHHH--hcCcCceeeEEEECCCCcEEE
Q 013684 308 GDPTIKELTK--YFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 308 ~~d~~~~l~~--~~~v~~~P~~~lid~~G~i~~ 338 (438)
.+..+.. .++++++||++-++..++++.
T Consensus 75 ---p~n~fR~~p~~~l~~IPTLi~~~~~~rL~e 104 (119)
T PF06110_consen 75 ---PNNPFRTDPDLKLKGIPTLIRWETGERLVE 104 (119)
T ss_dssp ---TTSHHHH--CC---SSSEEEECTSS-EEEH
T ss_pred ---CCCCceEcceeeeeecceEEEECCCCccch
Confidence 1233444 699999999999977766553
|
; PDB: 1V9W_A 1WOU_A. |
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00075 Score=55.75 Aligned_cols=77 Identities=10% Similarity=0.065 Sum_probs=52.9
Q ss_pred ccccCCCEEEEEEecC----CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccc
Q 013684 231 VSSLVGKTVGLYFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALP 306 (438)
Q Consensus 231 l~~~~gk~vll~F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p 306 (438)
.+.-.+|.++|+|+++ ||.+|+..... .++.+-+.. ++.+.+.+++..+
T Consensus 12 ~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~----------~fv~w~~dv~~~e---------------- 64 (116)
T cd02991 12 DAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT----------RMLFWACSVAKPE---------------- 64 (116)
T ss_pred HHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc----------CEEEEEEecCChH----------------
Confidence 3445689999999999 88999774321 123333332 4555555555432
Q ss_pred cCCchhHHHHHhcCcCceeeEEEE---CCCCcEEEc
Q 013684 307 FGDPTIKELTKYFDVQGIPCLVII---GPEGKTVTK 339 (438)
Q Consensus 307 ~~~d~~~~l~~~~~v~~~P~~~li---d~~G~i~~~ 339 (438)
..+++..+++.++|++.++ +.+.+++.+
T Consensus 65 -----g~~la~~l~~~~~P~~~~l~~~~~~~~vv~~ 95 (116)
T cd02991 65 -----GYRVSQALRERTYPFLAMIMLKDNRMTIVGR 95 (116)
T ss_pred -----HHHHHHHhCCCCCCEEEEEEecCCceEEEEE
Confidence 3678999999999999999 666666766
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0004 Score=58.81 Aligned_cols=87 Identities=20% Similarity=0.300 Sum_probs=61.7
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHH---HHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCCh----
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVD---VYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL---- 138 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~---- 138 (438)
+...++|..++.|-...|++|.++...+.. +.+-+++ ++.++.+....... +.+.+.
T Consensus 37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~---hf~~~~l~i~~skp-------------v~f~~g~kee 100 (182)
T COG2143 37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE---HFSAYYLNISYSKP-------------VLFKVGDKEE 100 (182)
T ss_pred hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh---CeEEEEEEeccCcc-------------eEeecCceee
Confidence 344578999999999999999998876643 5555554 37777777643322 111111
Q ss_pred -HHHHHHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 139 -ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 139 -~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
....+|++.|+|+++|+++++|. +|+.+..
T Consensus 101 ~~s~~ELa~kf~vrstPtfvFfdk---~Gk~Il~ 131 (182)
T COG2143 101 KMSTEELAQKFAVRSTPTFVFFDK---TGKTILE 131 (182)
T ss_pred eecHHHHHHHhccccCceEEEEcC---CCCEEEe
Confidence 11279999999999999999999 9876643
|
|
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00037 Score=52.57 Aligned_cols=63 Identities=16% Similarity=0.345 Sum_probs=40.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH-h
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK-Y 318 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~-~ 318 (438)
+..||++|||+|+...+.|.++ ++.+-.++++.+.+.. ..+.+ .
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~----------------~~~~~~idi~~~~~~~-------------------~~~~~~~ 46 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL----------------GAAYEWVDIEEDEGAA-------------------DRVVSVN 46 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc----------------CCceEEEeCcCCHhHH-------------------HHHHHHh
Confidence 5679999999999988877543 2345556666553211 11212 2
Q ss_pred cCcCceeeEEEECCCCcEEEc
Q 013684 319 FDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 319 ~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.++|++ ++ .+|+++..
T Consensus 47 ~~~~~vP~i-~~-~~g~~l~~ 65 (77)
T TIGR02200 47 NGNMTVPTV-KF-ADGSFLTN 65 (77)
T ss_pred CCCceeCEE-EE-CCCeEecC
Confidence 588999986 46 47777654
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0003 Score=60.57 Aligned_cols=120 Identities=17% Similarity=0.323 Sum_probs=86.2
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe--ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS--ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
+.+|+.+|+|+ ..+..|+ +++.++-|.-+.|.|. |...|.|..++..+++++-+|..++ +.+++.|+
T Consensus 6 l~lgd~~PNfe--------a~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn--vKlialS~ 74 (224)
T KOG0854|consen 6 LRLGDTVPNFE--------ADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN--VKLIALSV 74 (224)
T ss_pred ccccCcCCCcc--------ccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC--ceEEEeeh
Confidence 34899999999 7777775 9999999887777787 7778999999999999999999876 99999999
Q ss_pred CC--CHHHHHHhHhcC----CcccccCC-ChHHHHHHhhhcCcC------------ccceEEEecCCCCCCCcccc
Q 013684 115 DE--DLNAFNNYRACM----PWLAVPYS-DLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 115 D~--~~~~~~~~~~~~----~~~~~~~~-d~~~~~~l~~~~~v~------------~~P~~~lvd~~~~~G~v~~~ 171 (438)
|. +...|.+-++.+ +- .++|. -.+...+++-.|+.- ....+++|++ +.++.-.
T Consensus 75 d~vesH~~Wi~DIks~~~~~~~-~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~p---dkKirLs 146 (224)
T KOG0854|consen 75 DDVESHKDWIKDIKSYAKVKNH-SVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDP---DKKIRLS 146 (224)
T ss_pred hhHHHHHHHHHHHHHHHhccCC-CCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECC---CceEEEE
Confidence 83 445554444322 21 13332 112236676666541 3568889998 8776533
|
|
| >KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00035 Score=59.92 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=58.1
Q ss_pred ccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 41 SLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 41 ~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
..+=+|+ ..+.+|+.|+|+.++||++||.--|+-|+.-...-..|+.++++|++.| ++|++....
T Consensus 12 ~siydf~--------~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCN 76 (171)
T KOG1651|consen 12 GSIYDFS--------AKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCN 76 (171)
T ss_pred cceeeeE--------EecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccc
Confidence 3445677 8899999999999999999999999999988877789999999999998 999999864
|
|
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00023 Score=54.79 Aligned_cols=65 Identities=23% Similarity=0.396 Sum_probs=45.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|+++|||+|....+.|.++. +. +.++++-|+.+.+.+.+. ..+.+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~----------~~~~~~~v~~~~~~~~~~------------------~~l~~~~ 50 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK----------PAYEVVELDQLSNGSEIQ------------------DYLEEIT 50 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC----------CCCEEEEeeCCCChHHHH------------------HHHHHHh
Confidence 46799999999999999888765 22 126677777664433322 3456678
Q ss_pred CcCceeeEEEECCCCcEE
Q 013684 320 DVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~ 337 (438)
|+..+|+++ + +|+.+
T Consensus 51 g~~~vP~v~-i--~g~~i 65 (84)
T TIGR02180 51 GQRTVPNIF-I--NGKFI 65 (84)
T ss_pred CCCCCCeEE-E--CCEEE
Confidence 899999975 4 56654
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >cd02340 ZZ_NBR1_like Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=97.45 E-value=6.6e-05 Score=50.09 Aligned_cols=31 Identities=32% Similarity=0.775 Sum_probs=28.3
Q ss_pred ccCccCCCCCceeEEcCCC-CCCccCcccccc
Q 013684 400 ICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAV 430 (438)
Q Consensus 400 ~c~~C~~~~~~w~~~c~~c-~~~~~~~c~~~~ 430 (438)
.|+.|++...+-+|+|..| |||||..|....
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~~ 33 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAKG 33 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCcC
Confidence 6999999999999999999 999999997643
|
Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain. |
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0012 Score=62.41 Aligned_cols=93 Identities=12% Similarity=0.186 Sum_probs=56.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec---CCC-------------H-HHHHHHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST---DRD-------------Q-TSFESYF 297 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~---d~~-------------~-~~~~~~~ 297 (438)
.++.+++.|.-+.||+|+++...+.++.+. . +++|..+.. ..+ . ..|..+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g-----------~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~ 183 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-G-----------KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYE 183 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-C-----------ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHH
Confidence 467899999999999999999988776543 1 244433322 111 1 1122222
Q ss_pred hcCCC--ccccc--------CCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 298 GTMPW--LALPF--------GDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 298 ~~~~~--~~~p~--------~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..... +.-+- ..+.+..+.+.+|++++|++++.|.+|++...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 184 ASGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQV 235 (251)
T ss_pred HhhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEe
Confidence 11110 00100 11235578889999999999999999986443
|
|
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.43 E-value=8.2e-05 Score=64.60 Aligned_cols=86 Identities=23% Similarity=0.249 Sum_probs=44.8
Q ss_pred EeccccCCCEEEEEEeccCCccchhhHHH-H--HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHH
Q 013684 64 VKVSDLEGKVTALYFSANWYPPCGNFTGV-L--VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLET 140 (438)
Q Consensus 64 v~l~~~~gk~vll~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~ 140 (438)
+....-++|+++|.++++||..|+.+..+ + .++++-+++. |.-|-|+.++.++- +...
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDree~Pdi----------------d~~y 90 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDREERPDI----------------DKIY 90 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEETTT-HHH----------------HHHH
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEeccccCccH----------------HHHH
Confidence 34444468999999999999999988752 2 2244454433 55555554443321 1111
Q ss_pred HHHHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 141 KKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 141 ~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
........+..++|+++++.+ +|+.++.
T Consensus 91 ~~~~~~~~~~gGwPl~vfltP---dg~p~~~ 118 (163)
T PF03190_consen 91 MNAVQAMSGSGGWPLTVFLTP---DGKPFFG 118 (163)
T ss_dssp HHHHHHHHS---SSEEEEE-T---TS-EEEE
T ss_pred HHHHHHhcCCCCCCceEEECC---CCCeeee
Confidence 111122237789999999999 9998865
|
; PDB: 3IRA_A. |
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00044 Score=51.40 Aligned_cols=56 Identities=18% Similarity=0.491 Sum_probs=40.8
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
+..|+++||++|+...+.|.+ .+ +.+..++++.+.. ...++.+.+++..+|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~--------------------~~~~~~~~~~~~~vP 52 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KG--IAFEEIDVEKDSA--------------------AREEVLKVLGQRGVP 52 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CC--CeEEEEeccCCHH--------------------HHHHHHHHhCCCccc
Confidence 568999999999998777654 23 6677777765432 114677788999999
Q ss_pred eEEEe
Q 013684 155 CLVVL 159 (438)
Q Consensus 155 ~~~lv 159 (438)
++++-
T Consensus 53 ~~~~~ 57 (74)
T TIGR02196 53 VIVIG 57 (74)
T ss_pred EEEEC
Confidence 98863
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00029 Score=54.24 Aligned_cols=60 Identities=18% Similarity=0.361 Sum_probs=41.9
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|+++|||+|+...+.|.++. .. ..++++.|+.+.+.. .....+.+.+++..+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~---~~~~~~~v~~~~~~~-------------------~~~~~l~~~~g~~~vP 56 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK---PAYEVVELDQLSNGS-------------------EIQDYLEEITGQRTVP 56 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC---CCCEEEEeeCCCChH-------------------HHHHHHHHHhCCCCCC
Confidence 47899999999999999888765 21 126777666654322 1124567778889999
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
++++
T Consensus 57 ~v~i 60 (84)
T TIGR02180 57 NIFI 60 (84)
T ss_pred eEEE
Confidence 9854
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00031 Score=57.94 Aligned_cols=72 Identities=21% Similarity=0.509 Sum_probs=46.3
Q ss_pred CCCEEEEEEec-------cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHH
Q 013684 70 EGKVTALYFSA-------NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK 142 (438)
Q Consensus 70 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~ 142 (438)
.|++++|.|++ +|||.|+...|.+.+..+...+ +..+|.+.+.+. ..|+ ++. .
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r-~~Wk--------------dp~--n 77 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDR-PEWK--------------DPN--N 77 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---H-HHHC---------------TT--S
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCH-HHhC--------------CCC--C
Confidence 46788888885 5999999999999998888433 377777776422 2222 111 2
Q ss_pred HHhh--hcCcCccceEEEecC
Q 013684 143 ALNR--KFDIEGIPCLVVLQP 161 (438)
Q Consensus 143 ~l~~--~~~v~~~P~~~lvd~ 161 (438)
.... .+++.++||++-++.
T Consensus 78 ~fR~~p~~~l~~IPTLi~~~~ 98 (119)
T PF06110_consen 78 PFRTDPDLKLKGIPTLIRWET 98 (119)
T ss_dssp HHHH--CC---SSSEEEECTS
T ss_pred CceEcceeeeeecceEEEECC
Confidence 3333 589999999999986
|
; PDB: 1V9W_A 1WOU_A. |
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00065 Score=51.22 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=39.3
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh-hcCcCcc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR-KFDIEGI 153 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~~v~~~ 153 (438)
+..||++||++|+...+.|.++ + +.+-.++++.+... ...+.. .+++..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~--~~~~~idi~~~~~~--------------------~~~~~~~~~~~~~v 52 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------G--AAYEWVDIEEDEGA--------------------ADRVVSVNNGNMTV 52 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CceEEEeCcCCHhH--------------------HHHHHHHhCCCcee
Confidence 5789999999999988876543 3 33445666644321 022222 2578899
Q ss_pred ceEEEecCCCCCCCcccc
Q 013684 154 PCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 154 P~~~lvd~~~~~G~v~~~ 171 (438)
|++ +++ +|.++..
T Consensus 53 P~i-~~~----~g~~l~~ 65 (77)
T TIGR02200 53 PTV-KFA----DGSFLTN 65 (77)
T ss_pred CEE-EEC----CCeEecC
Confidence 986 455 6665544
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0035 Score=58.46 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=54.7
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---CH----------------HHHHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQ----------------TSFES 295 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~~----------------~~~~~ 295 (438)
.|+.+++.|..+.||+|+++.+.+.++.+ . ++.|..+.... .. ..+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~---------~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~ 172 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----L---------GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDD 172 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----C---------CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHH
Confidence 47789999999999999999988876543 2 35555543211 11 12222
Q ss_pred HHhcCCCcc---cccCCchhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 296 YFGTMPWLA---LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 296 ~~~~~~~~~---~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
++.... .. .....+.+.++++.+||+++|+++ + ++|+++
T Consensus 173 ~~~~~~-~~~~~c~~~v~~~~~la~~lgi~gTPtiv-~-~~G~~~ 214 (232)
T PRK10877 173 AMKGKD-VSPASCDVDIADHYALGVQFGVQGTPAIV-L-SNGTLV 214 (232)
T ss_pred HHcCCC-CCcccccchHHHhHHHHHHcCCccccEEE-E-cCCeEe
Confidence 222111 11 111224667899999999999988 4 578776
|
|
| >cd02343 ZZ_EF Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00014 Score=49.22 Aligned_cols=29 Identities=31% Similarity=0.804 Sum_probs=27.0
Q ss_pred ccCccCCCCCceeEEcCCC-CCCccCcccc
Q 013684 400 ICCDCDEQGSGWAYQCLEC-GYEVHPKCVR 428 (438)
Q Consensus 400 ~c~~C~~~~~~w~~~c~~c-~~~~~~~c~~ 428 (438)
.||.|.+.-++.+|+|.+| ||||+..|-.
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~ 31 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFL 31 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHh
Confidence 5999999999999999999 9999999965
|
Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. |
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0067 Score=45.93 Aligned_cols=58 Identities=24% Similarity=0.454 Sum_probs=40.6
Q ss_pred ecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCc
Q 013684 244 SARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG 323 (438)
Q Consensus 244 ~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~ 323 (438)
++++|+.|......++++.+++. +.+-.+.. .+ ..++ .+|||.+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~------------i~~ei~~~-~~----------------------~~~~-~~ygv~~ 49 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG------------IEVEIIDI-ED----------------------FEEI-EKYGVMS 49 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT------------EEEEEEET-TT----------------------HHHH-HHTT-SS
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC------------CeEEEEEc-cC----------------------HHHH-HHcCCCC
Confidence 57779999988888888777663 34433333 23 2455 8999999
Q ss_pred eeeEEEECCCCcEEEcc
Q 013684 324 IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 324 ~P~~~lid~~G~i~~~~ 340 (438)
+|++ ++ ||+++..+
T Consensus 50 vPal-vI--ng~~~~~G 63 (76)
T PF13192_consen 50 VPAL-VI--NGKVVFVG 63 (76)
T ss_dssp SSEE-EE--TTEEEEES
T ss_pred CCEE-EE--CCEEEEEe
Confidence 9998 56 58888764
|
... |
| >cd02339 ZZ_Mind_bomb Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00028 Score=47.47 Aligned_cols=30 Identities=37% Similarity=1.005 Sum_probs=26.2
Q ss_pred ccCccCCCC-CceeEEcCCC-CCCccCccccc
Q 013684 400 ICCDCDEQG-SGWAYQCLEC-GYEVHPKCVRA 429 (438)
Q Consensus 400 ~c~~C~~~~-~~w~~~c~~c-~~~~~~~c~~~ 429 (438)
.|+.|++.. .+-+|+|..| ||||+..|...
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~ 33 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG 33 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence 699999544 5999999999 99999999864
|
Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster. |
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0041 Score=56.46 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=57.4
Q ss_pred eeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--C--------------HHH
Q 013684 229 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR--D--------------QTS 292 (438)
Q Consensus 229 ~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~--~--------------~~~ 292 (438)
+.+..-.+++.++.|+.+.||+|+++.+.+.+ .... -.+.++.+.... + .+.
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~--------v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a 137 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP----NADG--------VTVRIFPVPILGLPDSTAKAAAIWCAKDRAKA 137 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh----ccCc--------eEEEEEEcCcCCCccHHHHHHHhhcccCHHHH
Confidence 33333447899999999999999999998876 1111 134555554432 1 112
Q ss_pred HHHHHhcCCC----cccccCCchhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 293 FESYFGTMPW----LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 293 ~~~~~~~~~~----~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
|.++.....- -......+.+..+++.+||+++|+++ + .+|+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 138 WTDAMSGGKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred HHHHHhCCCCCCCccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 3333322110 01112334667899999999999997 5 567764
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00085 Score=61.53 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=58.1
Q ss_pred HHHhhccchhHHHHHhhcccccCCCCCE-EeccccC--CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEE
Q 013684 36 RFLIMSLSQWYVQQLRRRMTSTKEIGEE-VKVSDLE--GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 112 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~~~~g~~-v~l~~~~--gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~v 112 (438)
...+|..|||.. +.+.+|+. .++.|+. +++++|+|.+-.||+=+.-++.++++.++|.+. .++-+|.|
T Consensus 72 ~a~~G~~APns~--------vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI 142 (237)
T PF00837_consen 72 EAKLGGPAPNSP--------VVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYI 142 (237)
T ss_pred ceeCCCCCCCCc--------eEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhH
Confidence 445799999999 78999998 8999983 689999999999999999999999999999886 24555555
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0046 Score=47.89 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=46.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+..|+.+|||+|......|.++..++. ++.+..++++.+..+. .++.+.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~-----------~i~~~~idi~~~~~~~-------------------~el~~~~ 52 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD-----------DFDYRYVDIHAEGISK-------------------ADLEKTV 52 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc-----------CCcEEEEECCCChHHH-------------------HHHHHHH
Confidence 567889999999999999999886643 4677778777553211 2334434
Q ss_pred --CcCceeeEEEECCCCcEEE
Q 013684 320 --DVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 320 --~v~~~P~~~lid~~G~i~~ 338 (438)
++..+|+++ + +|+.+.
T Consensus 53 ~~~~~~vP~if-i--~g~~ig 70 (85)
T PRK11200 53 GKPVETVPQIF-V--DQKHIG 70 (85)
T ss_pred CCCCCcCCEEE-E--CCEEEc
Confidence 458899976 4 677764
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.018 Score=60.37 Aligned_cols=71 Identities=11% Similarity=0.203 Sum_probs=49.7
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
..+.+..-+..|..+.||+|......+++++... +++..-.| |...
T Consensus 112 ~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-----------~~i~~~~i--d~~~--------------------- 157 (517)
T PRK15317 112 KALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN-----------PNITHTMI--DGAL--------------------- 157 (517)
T ss_pred HhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-----------CCceEEEE--Echh---------------------
Confidence 3445566788999999999998877777666532 34555555 3332
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..++.+.|++.++|++++ +|+.+..
T Consensus 158 ~~~~~~~~~v~~VP~~~i---~~~~~~~ 182 (517)
T PRK15317 158 FQDEVEARNIMAVPTVFL---NGEEFGQ 182 (517)
T ss_pred CHhHHHhcCCcccCEEEE---CCcEEEe
Confidence 377889999999999975 4555543
|
|
| >cd02249 ZZ Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0004 Score=47.14 Aligned_cols=32 Identities=25% Similarity=0.700 Sum_probs=29.0
Q ss_pred cccCccCCCCCceeEEcCCC-CCCccCcccccc
Q 013684 399 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAV 430 (438)
Q Consensus 399 ~~c~~C~~~~~~w~~~c~~c-~~~~~~~c~~~~ 430 (438)
|.|+.|++.-.+-+|+|.+| +|||+.+|....
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence 57999999888899999999 799999998765
|
Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins. |
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0028 Score=52.33 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=49.1
Q ss_pred cccCCCEEEEEEecc----CCccchhhH--HHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHH
Q 013684 67 SDLEGKVTALYFSAN----WYPPCGNFT--GVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLET 140 (438)
Q Consensus 67 ~~~~gk~vll~F~a~----wC~~C~~~~--p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~ 140 (438)
..-++|.++|+++++ ||..|+..+ |.+.+..+ + ++.+++.++.....
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~---~fv~w~~dv~~~eg--------------------- 65 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---T---RMLFWACSVAKPEG--------------------- 65 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---c---CEEEEEEecCChHH---------------------
Confidence 344689999999999 888997765 44444442 2 37666666654321
Q ss_pred HHHHhhhcCcCccceEEEecC
Q 013684 141 KKALNRKFDIEGIPCLVVLQP 161 (438)
Q Consensus 141 ~~~l~~~~~v~~~P~~~lvd~ 161 (438)
..++..+++..+|++.++.+
T Consensus 66 -~~la~~l~~~~~P~~~~l~~ 85 (116)
T cd02991 66 -YRVSQALRERTYPFLAMIML 85 (116)
T ss_pred -HHHHHHhCCCCCCEEEEEEe
Confidence 68899999999999999975
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >cd02334 ZZ_dystrophin Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00041 Score=47.53 Aligned_cols=30 Identities=33% Similarity=0.907 Sum_probs=26.4
Q ss_pred ccCccCCC-CCceeEEcCCC-CCCccCccccc
Q 013684 400 ICCDCDEQ-GSGWAYQCLEC-GYEVHPKCVRA 429 (438)
Q Consensus 400 ~c~~C~~~-~~~w~~~c~~c-~~~~~~~c~~~ 429 (438)
.|+.|++. -.+.+|+|..| ||||+..|-..
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~ 33 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFS 33 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHhC
Confidence 59999974 68999999999 99999999753
|
Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan. |
| >cd02342 ZZ_UBA_plant Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00039 Score=45.50 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=27.2
Q ss_pred ccCccCC-CCCceeEEcCCC-CCCccCccccccC
Q 013684 400 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRAVD 431 (438)
Q Consensus 400 ~c~~C~~-~~~~w~~~c~~c-~~~~~~~c~~~~~ 431 (438)
.||.|+. .-.+-+|+|..| ||||+..|-....
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~~ 35 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRMG 35 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhhhc
Confidence 5999997 458899999999 9999999986543
|
Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding. |
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0068 Score=55.02 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=56.9
Q ss_pred EeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC---C-------------HHHHHHhHhc
Q 013684 64 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---D-------------LNAFNNYRAC 127 (438)
Q Consensus 64 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~---~-------------~~~~~~~~~~ 127 (438)
+.+..-.++..++.|+.+.||+|+++.+.+.+ ...+..+.++.++... . .+.|.++...
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~-----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~ 144 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP-----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSG 144 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh-----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhC
Confidence 44444457999999999999999999998876 1222234444444332 1 1222222222
Q ss_pred CCc---ccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcc
Q 013684 128 MPW---LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 128 ~~~---~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
..- ........+.+..+++.+|+.++|+++ ++ +|+++
T Consensus 145 ~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~----~G~~~ 184 (197)
T cd03020 145 GKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-LA----DGRVV 184 (197)
T ss_pred CCCCCCccccCchHHHHHHHHHHcCCCcccEEE-EC----CCeEe
Confidence 111 001112334567899999999999997 44 56543
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.001 Score=60.07 Aligned_cols=70 Identities=19% Similarity=0.346 Sum_probs=55.5
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+++.+++.||+.||.+|.++...+..+.+.++ ++.++.+..+. ..+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~-----------~~~~~k~~a~~-----------------------~~e 61 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK-----------NAQFLKLEAEE-----------------------FPE 61 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh-----------hheeeeehhhh-----------------------hhH
Confidence 67889999999999999999999998888773 34555554443 267
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++..+.+.+.|.+.++ ..|+.+.+
T Consensus 62 is~~~~v~~vp~~~~~-~~~~~v~~ 85 (227)
T KOG0911|consen 62 ISNLIAVEAVPYFVFF-FLGEKVDR 85 (227)
T ss_pred HHHHHHHhcCceeeee-ecchhhhh
Confidence 8999999999998888 67766655
|
|
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0059 Score=57.62 Aligned_cols=92 Identities=15% Similarity=0.225 Sum_probs=56.4
Q ss_pred cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec-----C-----------CCH-HHHHHhHhcCCcc
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS-----D-----------EDL-NAFNNYRACMPWL 131 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~-----D-----------~~~-~~~~~~~~~~~~~ 131 (438)
-.+|.+++.|+-+.||+|+++.+++.++.+. | ++++..+.+ + .++ ..|..+.......
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~ 189 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS----G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKL 189 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc----C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhcc
Confidence 3578999999999999999999988776543 2 255544432 1 111 1222222211110
Q ss_pred ---cccC-C-----ChHHHHHHhhhcCcCccceEEEecCCCCCCCc
Q 013684 132 ---AVPY-S-----DLETKKALNRKFDIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 132 ---~~~~-~-----d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v 168 (438)
...- . ....+..+.+.+|++++|++++.|. +|.+
T Consensus 190 ~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~---~G~~ 232 (251)
T PRK11657 190 GLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDK---DGTL 232 (251)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC---CCCE
Confidence 0000 0 1123467888999999999999998 8875
|
|
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.011 Score=42.41 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=41.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|+.+|||+|......|.+ . ++.+-.++++.+.+. ..++.+..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~---------~i~y~~~dv~~~~~~-------------------~~~l~~~~ 45 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------K---------GIPYEEVDVDEDEEA-------------------REELKELS 45 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------T---------TBEEEEEEGGGSHHH-------------------HHHHHHHH
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------c---------CCeeeEcccccchhH-------------------HHHHHHHc
Confidence 467889999999998777632 2 567777777765421 24555556
Q ss_pred CcCceeeEEEECCCCcE
Q 013684 320 DVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i 336 (438)
|...+|++++ +|+.
T Consensus 46 g~~~~P~v~i---~g~~ 59 (60)
T PF00462_consen 46 GVRTVPQVFI---DGKF 59 (60)
T ss_dssp SSSSSSEEEE---TTEE
T ss_pred CCCccCEEEE---CCEE
Confidence 9999999885 5554
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >cd02344 ZZ_HERC2 Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.00098 Score=44.68 Aligned_cols=30 Identities=20% Similarity=0.729 Sum_probs=25.9
Q ss_pred ccCccCC-CCCceeEEcCCC-CCCccCccccc
Q 013684 400 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA 429 (438)
Q Consensus 400 ~c~~C~~-~~~~w~~~c~~c-~~~~~~~c~~~ 429 (438)
.|+.|+. .-.+-+|+|.+| ||||+..|-..
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 5999986 567799999999 89999999754
|
Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. |
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0034 Score=50.86 Aligned_cols=72 Identities=21% Similarity=0.412 Sum_probs=48.9
Q ss_pred CCCEEEEEEec--------cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHH
Q 013684 70 EGKVTALYFSA--------NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 141 (438)
Q Consensus 70 ~gk~vll~F~a--------~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 141 (438)
+|+.+++.|++ +|||.|....|.+.+..+... .++.+|.+.+.+.+- |. ++.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap---~~~~~v~v~VG~rp~----------Wk-----~p~-- 83 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP---EDVHFVHVYVGNRPY----------WK-----DPA-- 83 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC---CceEEEEEEecCCCc----------cc-----CCC--
Confidence 56778899985 799999999999998888543 347777776642211 21 111
Q ss_pred HHHhhhcCc-CccceEEEecC
Q 013684 142 KALNRKFDI-EGIPCLVVLQP 161 (438)
Q Consensus 142 ~~l~~~~~v-~~~P~~~lvd~ 161 (438)
..+....++ .++||++=.++
T Consensus 84 n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 84 NPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred CccccCCCceeecceeeEEcC
Confidence 334444555 89999998884
|
|
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.014 Score=54.48 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=51.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-----C-------------C-HHHHHHhHhcCCc
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----E-------------D-LNAFNNYRACMPW 130 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-----~-------------~-~~~~~~~~~~~~~ 130 (438)
.||.+++.|.-+.||+|+++.+++.++.+ .+ ++|.++... . + ...|.+.+.....
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~--v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LG--ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----CC--eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 57899999999999999999988876533 33 666554321 0 1 1112222221111
Q ss_pred cc-ccCCChHHHHHHhhhcCcCccceEEE
Q 013684 131 LA-VPYSDLETKKALNRKFDIEGIPCLVV 158 (438)
Q Consensus 131 ~~-~~~~d~~~~~~l~~~~~v~~~P~~~l 158 (438)
.. ....+...+.++++.+||+++|++++
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv~ 208 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIVL 208 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEEE
Confidence 11 11123345689999999999999884
|
|
| >cd02335 ZZ_ADA2 Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0013 Score=45.36 Aligned_cols=32 Identities=25% Similarity=0.705 Sum_probs=27.7
Q ss_pred cccCccCCCCCc-eeEEcCCC-CCCccCcccccc
Q 013684 399 FICCDCDEQGSG-WAYQCLEC-GYEVHPKCVRAV 430 (438)
Q Consensus 399 ~~c~~C~~~~~~-w~~~c~~c-~~~~~~~c~~~~ 430 (438)
|.|+.|.+.-.. -+|+|.+| +|||+..|-...
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g 34 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSAG 34 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhCc
Confidence 579999987776 89999999 999999998643
|
Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. |
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.013 Score=51.82 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=29.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHh
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQ 267 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~ 267 (438)
.+++.++.|+...||+|..+.+.+.++.+++.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 578999999999999999999999999888754
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0093 Score=56.55 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=54.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++.+|+|.||-+.++.|..+...|..|+.+|. .++|+.|....- .
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-----------~vKFvkI~a~~~-----------------------~- 189 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-----------EVKFVKIRASKC-----------------------P- 189 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-----------TSEEEEEEECGC-----------------------C-
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-----------ceEEEEEehhcc-----------------------C-
Confidence 35689999999999999999999999999987 468888876532 1
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+...|....+|+++++ ++|.++...
T Consensus 190 ~~~~f~~~~LPtllvY-k~G~l~~~~ 214 (265)
T PF02114_consen 190 ASENFPDKNLPTLLVY-KNGDLIGNF 214 (265)
T ss_dssp TTTTS-TTC-SEEEEE-ETTEEEEEE
T ss_pred cccCCcccCCCEEEEE-ECCEEEEeE
Confidence 4567889999999999 899988764
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0076 Score=48.86 Aligned_cols=72 Identities=19% Similarity=0.348 Sum_probs=48.9
Q ss_pred CCCEEEEEEec--------CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccc
Q 013684 235 VGKTVGLYFSA--------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALP 306 (438)
Q Consensus 235 ~gk~vll~F~a--------~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p 306 (438)
+|+.++++|.+ +|||.|.+..|.+.+..+.... ++.+|-+.+.. .+.|
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~----------~~~~v~v~VG~-rp~W------------- 79 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE----------DVHFVHVYVGN-RPYW------------- 79 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC----------ceEEEEEEecC-CCcc-------------
Confidence 35557777775 4999999999998888775543 57777777752 2222
Q ss_pred cCCchhHHHHHhcCc-CceeeEEEECC
Q 013684 307 FGDPTIKELTKYFDV-QGIPCLVIIGP 332 (438)
Q Consensus 307 ~~~d~~~~l~~~~~v-~~~P~~~lid~ 332 (438)
.+.+..+....++ .++||++=.+.
T Consensus 80 --k~p~n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 80 --KDPANPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred --cCCCCccccCCCceeecceeeEEcC
Confidence 1223445555666 89999998864
|
|
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.013 Score=44.33 Aligned_cols=59 Identities=20% Similarity=0.457 Sum_probs=39.8
Q ss_pred EeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEE
Q 013684 78 FSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLV 157 (438)
Q Consensus 78 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~ 157 (438)
+++++|+.|......++++.+++. .+++++ ... +. .++ ..||+..+|+++
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~---i~~ei~--~~~---------------------~~---~~~-~~ygv~~vPalv 54 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG---IEVEII--DIE---------------------DF---EEI-EKYGVMSVPALV 54 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT---EEEEEE--ETT---------------------TH---HHH-HHTT-SSSSEEE
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC---CeEEEE--Ecc---------------------CH---HHH-HHcCCCCCCEEE
Confidence 367779999988888888877752 124333 221 11 556 899999999996
Q ss_pred EecCCCCCCCccccc
Q 013684 158 VLQPYDDKDDATLHD 172 (438)
Q Consensus 158 lvd~~~~~G~v~~~~ 172 (438)
+ ||++++.+
T Consensus 55 I------ng~~~~~G 63 (76)
T PF13192_consen 55 I------NGKVVFVG 63 (76)
T ss_dssp E------TTEEEEES
T ss_pred E------CCEEEEEe
Confidence 6 67776554
|
... |
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0066 Score=47.40 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=48.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC--CC-----HHHHHHHH--hcCCCcccccCCc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--RD-----QTSFESYF--GTMPWLALPFGDP 310 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d--~~-----~~~~~~~~--~~~~~~~~p~~~d 310 (438)
+..|+.+.||+|....+.+.++.+...+ ++.+....+. .. ....+... .... ....+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 69 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG----------GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQG-KFEALHEA 69 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC----------cEEEEEeccccCCCCCcchHHHHHHHHHHHHcC-cHHHHHHH
Confidence 3578899999999999999988744332 4667666542 22 11111111 1100 00000000
Q ss_pred -hhHHHHHhcCcCceeeEEEEC
Q 013684 311 -TIKELTKYFDVQGIPCLVIIG 331 (438)
Q Consensus 311 -~~~~l~~~~~v~~~P~~~lid 331 (438)
......+.+|+.++|++++-|
T Consensus 70 l~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 70 LADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHHHHcCCCCCCEEEECC
Confidence 456788899999999998876
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.1 Score=54.73 Aligned_cols=71 Identities=14% Similarity=0.276 Sum_probs=47.8
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
..+.++.-+..|..+.||+|+.....++++.... +++..-.| |...
T Consensus 113 ~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-----------p~i~~~~i--d~~~--------------------- 158 (515)
T TIGR03140 113 RRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN-----------PNISHTMI--DGAL--------------------- 158 (515)
T ss_pred HhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-----------CCceEEEE--Echh---------------------
Confidence 4455667788999999999997766666555442 24444443 3322
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+++.++|++.++|++++ +|+.+..
T Consensus 159 ~~~~~~~~~v~~VP~~~i---~~~~~~~ 183 (515)
T TIGR03140 159 FQDEVEALGIQGVPAVFL---NGEEFHN 183 (515)
T ss_pred CHHHHHhcCCcccCEEEE---CCcEEEe
Confidence 267889999999999875 4444443
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0041 Score=44.64 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=39.2
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|+.+|||+|+.....| .+.| +..-.++++.+.+ ...++.+..+...+|
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~--i~y~~~dv~~~~~--------------------~~~~l~~~~g~~~~P 51 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKG--IPYEEVDVDEDEE--------------------AREELKELSGVRTVP 51 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTT--BEEEEEEGGGSHH--------------------HHHHHHHHHSSSSSS
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcC--CeeeEcccccchh--------------------HHHHHHHHcCCCccC
Confidence 4678999999999977665 2333 6666777765532 125666666999999
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
++++
T Consensus 52 ~v~i 55 (60)
T PF00462_consen 52 QVFI 55 (60)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9886
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0021 Score=43.11 Aligned_cols=32 Identities=28% Similarity=0.814 Sum_probs=28.8
Q ss_pred CcccCccCCCCCceeEEcCCC-CCCccCccccc
Q 013684 398 PFICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA 429 (438)
Q Consensus 398 ~~~c~~C~~~~~~w~~~c~~c-~~~~~~~c~~~ 429 (438)
.+.|+.|++.-.+-+|+|..| +|||++.|-..
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~ 36 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAK 36 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhC
Confidence 468999999888899999999 99999999764
|
Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3]. |
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.033 Score=50.93 Aligned_cols=115 Identities=10% Similarity=0.128 Sum_probs=82.0
Q ss_pred CCCCCccCCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 013684 215 HDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 294 (438)
Q Consensus 215 ~~~~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 294 (438)
+.|.+++ +|. ..+.+..|++++|.+...+|..|...+..|..|..++... +..++.++.|+--.....++
T Consensus 9 ~~p~W~i--~~~--~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~------g~~~I~f~vVN~~~~~s~~~ 78 (238)
T PF04592_consen 9 PPPPWKI--GGQ--DPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENE------GLSNISFMVVNHQGEHSRLK 78 (238)
T ss_pred CCCCceE--CCc--hHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHC------CCCceEEEEEcCCCcchhHH
Confidence 3455543 232 4567889999999999999999999999999999999865 24578888888644333332
Q ss_pred -HHHhcCCCcccccCC--chhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 295 -SYFGTMPWLALPFGD--PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 295 -~~~~~~~~~~~p~~~--d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
..++..--..+|+.. .....++..++-..- -++|+|+=|++.+.-
T Consensus 79 ~~~l~~r~~~~ipVyqq~~~q~dvW~~L~G~kd-D~~iyDRCGrL~~~i 126 (238)
T PF04592_consen 79 YWELKRRVSEHIPVYQQDENQPDVWELLNGSKD-DFLIYDRCGRLTYHI 126 (238)
T ss_pred HHHHHHhCCCCCceecCCccccCHHHHhCCCcC-cEEEEeccCcEEEEe
Confidence 233332224577753 355778888876654 679999999999873
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >cd02341 ZZ_ZZZ3 Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0018 Score=44.23 Aligned_cols=32 Identities=31% Similarity=0.752 Sum_probs=28.2
Q ss_pred cccCccCC-CCCceeEEcCCCC---CCccCcccccc
Q 013684 399 FICCDCDE-QGSGWAYQCLECG---YEVHPKCVRAV 430 (438)
Q Consensus 399 ~~c~~C~~-~~~~w~~~c~~c~---~~~~~~c~~~~ 430 (438)
|.|+.|++ .-.+-+|+|.+|. |||+..|....
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~ 36 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKG 36 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCc
Confidence 57999998 7789999999997 99999997644
|
Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. |
| >PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.00077 Score=45.75 Aligned_cols=33 Identities=27% Similarity=0.752 Sum_probs=25.2
Q ss_pred CCcccCccCC-CCCceeEEcCCC-CCCccCccccc
Q 013684 397 GPFICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA 429 (438)
Q Consensus 397 ~~~~c~~C~~-~~~~w~~~c~~c-~~~~~~~c~~~ 429 (438)
..+.|+.|+. .-.+-+|+|..| ||||+..|-..
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~ 37 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSK 37 (46)
T ss_dssp SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH
T ss_pred CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhC
Confidence 3578999998 556889999999 89999999754
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A. |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.008 Score=46.51 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=31.0
Q ss_pred EEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 74 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 74 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
-+..|+.+|||+|++....|.++..++ .+ +.+..++++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~--~~--i~~~~idi~~~ 41 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER--DD--FDYRYVDIHAE 41 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc--cC--CcEEEEECCCC
Confidence 367899999999999999999888764 23 66667777654
|
|
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.015 Score=52.62 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=50.9
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+++.+++.||++||.+|..+...+..+.+.++ ++.++.+..+. ..++++.+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a~~------------------------~~eis~~~~ 67 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEAEE------------------------FPEISNLIA 67 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehhhh------------------------hhHHHHHHH
Confidence 77899999999999999999998888888872 25555443332 278899999
Q ss_pred cCccceEEEec
Q 013684 150 IEGIPCLVVLQ 160 (438)
Q Consensus 150 v~~~P~~~lvd 160 (438)
+.+.|.+..+-
T Consensus 68 v~~vp~~~~~~ 78 (227)
T KOG0911|consen 68 VEAVPYFVFFF 78 (227)
T ss_pred HhcCceeeeee
Confidence 99999998885
|
|
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.048 Score=40.06 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=35.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|+++||++|......|.+ . ++.+..++++.+.+. ...+.+..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~---------~i~~~~~~i~~~~~~-------------------~~~~~~~~ 46 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------R---------GIPFEEVDVDEDPEA-------------------LEELKKLN 46 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------C---------CCCeEEEeCCCCHHH-------------------HHHHHHHc
Confidence 467889999999987665553 2 355666777654321 12334444
Q ss_pred CcCceeeEEE
Q 013684 320 DVQGIPCLVI 329 (438)
Q Consensus 320 ~v~~~P~~~l 329 (438)
++.++|++++
T Consensus 47 ~~~~vP~i~~ 56 (73)
T cd02976 47 GYRSVPVVVI 56 (73)
T ss_pred CCcccCEEEE
Confidence 7889999865
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0094 Score=45.48 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=39.4
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|+++|||+|+.....|.++.. .++++-++.+.+.. .....+.+..+...+|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~-------------------~~~~~~~~~~g~~~~P 55 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGS-------------------EIQDYLQELTGQRTVP 55 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChH-------------------HHHHHHHHHhCCCCCC
Confidence 477889999999998887776433 36666666554421 1124566677888999
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 56 ~v~~ 59 (82)
T cd03419 56 NVFI 59 (82)
T ss_pred eEEE
Confidence 9753
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0085 Score=53.76 Aligned_cols=93 Identities=22% Similarity=0.328 Sum_probs=62.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+.+.++|.|++.|-|.|+...|.+.++.-++...+ +.+-.|++..- .+.+.+|+
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDiGrf------------------------pd~a~kfr 196 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDIGRF------------------------PDVAAKFR 196 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCC--CcccceeeccC------------------------cChHHhee
Confidence 34689999999999999999999999999998876 44444433322 23345565
Q ss_pred c------CccceEEEecCCCCCCCcccccchhHHhhh-CCCCccCChhHHHH
Q 013684 150 I------EGIPCLVVLQPYDDKDDATLHDGVELIYKY-GIRAFPFTKEKLEE 194 (438)
Q Consensus 150 v------~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~-~~~a~p~~~e~l~~ 194 (438)
| +.+||.+|+. +|+-+.+.- .+... ..-.|+++++.+.+
T Consensus 197 is~s~~srQLPT~ilFq----~gkE~~RrP--~vd~~gra~s~~fSeenv~~ 242 (265)
T KOG0914|consen 197 ISLSPGSRQLPTYILFQ----KGKEVSRRP--DVDVKGRAVSFPFSEENVCQ 242 (265)
T ss_pred eccCcccccCCeEEEEc----cchhhhcCc--cccccCCcccccccHHHHHH
Confidence 5 4689999998 565444432 22222 22348888886643
|
|
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.01 Score=45.28 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=42.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|.++|||+|......|.++.. .++++-|+.+.+..+.+ ..+.+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~--------------~~~~~~v~~~~~~~~~~------------------~~~~~~~ 49 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV--------------KPAVVELDQHEDGSEIQ------------------DYLQELT 49 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC--------------CcEEEEEeCCCChHHHH------------------HHHHHHh
Confidence 467889999999999988887543 24566666654422221 3456677
Q ss_pred CcCceeeEEEECCCCcEE
Q 013684 320 DVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~ 337 (438)
|...+|.++ + +|+.+
T Consensus 50 g~~~~P~v~-~--~g~~i 64 (82)
T cd03419 50 GQRTVPNVF-I--GGKFI 64 (82)
T ss_pred CCCCCCeEE-E--CCEEE
Confidence 889999964 4 46655
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >cd02338 ZZ_PCMF_like Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0031 Score=43.36 Aligned_cols=31 Identities=29% Similarity=0.787 Sum_probs=26.3
Q ss_pred ccCccC-CCCCceeEEcCCC-CCCccCcccccc
Q 013684 400 ICCDCD-EQGSGWAYQCLEC-GYEVHPKCVRAV 430 (438)
Q Consensus 400 ~c~~C~-~~~~~w~~~c~~c-~~~~~~~c~~~~ 430 (438)
.|+.|+ ..-.+-+|+|..| +|||+..|-...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~ 34 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDSG 34 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHhCC
Confidence 599999 5566889999999 999999997643
|
Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination. |
| >cd02345 ZZ_dah Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0035 Score=43.10 Aligned_cols=30 Identities=27% Similarity=0.712 Sum_probs=26.1
Q ss_pred ccCccCC-CCCceeEEcCCC-CCCccCccccc
Q 013684 400 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA 429 (438)
Q Consensus 400 ~c~~C~~-~~~~w~~~c~~c-~~~~~~~c~~~ 429 (438)
.|+.|++ .-.+-+|+|.+| ||||+..|-..
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~ 33 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTK 33 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHhC
Confidence 5899998 566889999999 99999999763
|
Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila. |
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.026 Score=41.47 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=35.1
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|+++||++|+.....|.+ .+ +.+..+++|.+.. ....+.+..++..+|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~--------------------~~~~~~~~~~~~~vP 52 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPE--------------------ALEELKKLNGYRSVP 52 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHH--------------------HHHHHHHHcCCcccC
Confidence 567899999999997766554 23 4455556654422 113444445778899
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
++++
T Consensus 53 ~i~~ 56 (73)
T cd02976 53 VVVI 56 (73)
T ss_pred EEEE
Confidence 8764
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.028 Score=43.71 Aligned_cols=83 Identities=20% Similarity=0.171 Sum_probs=49.0
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC--CC-----HHHHHHhHhcCC-cccccCCChHHHHHHhh
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD--ED-----LNAFNNYRACMP-WLAVPYSDLETKKALNR 146 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D--~~-----~~~~~~~~~~~~-~~~~~~~d~~~~~~l~~ 146 (438)
+..|+...||+|....+.+.++...... ++.+....+. .. ............ .....+.+.-....+..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 4689999999999999999998744322 4777766653 21 111111111100 00000101113367888
Q ss_pred hcCcCccceEEEec
Q 013684 147 KFDIEGIPCLVVLQ 160 (438)
Q Consensus 147 ~~~v~~~P~~~lvd 160 (438)
.+|+.++|++++-|
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 89999999999865
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.04 Score=58.36 Aligned_cols=74 Identities=11% Similarity=0.124 Sum_probs=53.1
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
.++++.+.|+.|+...|..|......|+++. .+.+ .+.+.....+.+
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~----------~i~~~~~~~~~~---------------------- 408 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSE----------KLNSEAVNRGEE---------------------- 408 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCC----------cEEEEEeccccc----------------------
Confidence 4567788888999888988888777666665 3433 366655554433
Q ss_pred hHHHHHhcCcCceeeEEEECCCCc---EEEc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGK---TVTK 339 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~---i~~~ 339 (438)
.++.+.|++...|++.+++.+|+ |++.
T Consensus 409 -~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~ 438 (555)
T TIGR03143 409 -PESETLPKITKLPTVALLDDDGNYTGLKFH 438 (555)
T ss_pred -hhhHhhcCCCcCCEEEEEeCCCcccceEEE
Confidence 66788999999999999976653 5554
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.061 Score=45.21 Aligned_cols=78 Identities=12% Similarity=0.252 Sum_probs=52.9
Q ss_pred ecccc--CCCEEEEEEecc--CCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHH
Q 013684 65 KVSDL--EGKVTALYFSAN--WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLET 140 (438)
Q Consensus 65 ~l~~~--~gk~vll~F~a~--wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~ 140 (438)
++.++ .+...+|+|... -+|-+....=.|.++.++|.+. ++.++.|+.|..
T Consensus 26 ~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~--~v~~akVDiD~~----------------------- 80 (132)
T PRK11509 26 RLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY--TWQVAIADLEQS----------------------- 80 (132)
T ss_pred cHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC--ceEEEEEECCCC-----------------------
Confidence 34444 234566666633 2344445555677777777432 377777777754
Q ss_pred HHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 141 KKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 141 ~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..++.+|+|.++||++++. +|+.+.+.
T Consensus 81 -~~LA~~fgV~siPTLl~Fk----dGk~v~~i 107 (132)
T PRK11509 81 -EAIGDRFGVFRFPATLVFT----GGNYRGVL 107 (132)
T ss_pred -HHHHHHcCCccCCEEEEEE----CCEEEEEE
Confidence 7899999999999999998 88887654
|
|
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.086 Score=38.41 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=41.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+|||+|+.....|.+. ++.+..++++.+.+. ...+.+..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~----------------~i~~~~~di~~~~~~-------------------~~~l~~~~ 46 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL----------------GIEFEEIDILEDGEL-------------------REELKELS 46 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----------------CCcEEEEECCCCHHH-------------------HHHHHHHh
Confidence 4568899999999988877643 245666677655431 24455566
Q ss_pred CcCceeeEEEECCCCcEEE
Q 013684 320 DVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~~ 338 (438)
+...+|++++ +|+.+.
T Consensus 47 ~~~~~P~~~~---~~~~ig 62 (72)
T cd02066 47 GWPTVPQIFI---NGEFIG 62 (72)
T ss_pred CCCCcCEEEE---CCEEEe
Confidence 7788998753 666664
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.066 Score=41.53 Aligned_cols=65 Identities=20% Similarity=0.318 Sum_probs=40.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+|||+|.+....|.++..++. ++.+..++++.+... ..++.+.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-----------~i~~~~idi~~~~~~-------------------~~~l~~~~ 51 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-----------DFEFRYIDIHAEGIS-------------------KADLEKTV 51 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-----------CCcEEEEECCCCHHH-------------------HHHHHHHh
Confidence 456788999999998888777653322 345666666543211 13344555
Q ss_pred C--cCceeeEEEECCCCcEE
Q 013684 320 D--VQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~--v~~~P~~~lid~~G~i~ 337 (438)
| +..+|.++ + +|+.+
T Consensus 52 g~~~~tVP~if-i--~g~~i 68 (86)
T TIGR02183 52 GKPVETVPQIF-V--DEKHV 68 (86)
T ss_pred CCCCCCcCeEE-E--CCEEe
Confidence 5 37899985 5 46554
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.064 Score=43.60 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=37.3
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|..+|||+|++....|.+.- -...+++++-|+-..+ .......+.+..|-..+|
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~----i~~~~~~~i~i~~~~~-------------------~~~~~~~l~~~tG~~tVP 71 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFS----FKRGAYEIVDIKEFKP-------------------ENELRDYFEQITGGRTVP 71 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcC----CCcCCcEEEECCCCCC-------------------CHHHHHHHHHHcCCCCcC
Confidence 67889999999998766655431 1111355554432111 122236677777888999
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 72 ~IfI 75 (108)
T PHA03050 72 RIFF 75 (108)
T ss_pred EEEE
Confidence 9865
|
|
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.21 Score=45.09 Aligned_cols=113 Identities=19% Similarity=0.364 Sum_probs=79.1
Q ss_pred cCCCCCcc-CCCCCceeecccc-CCCE--EEEEEe-----cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 013684 214 NHDRGYLL-GHPPDEKVPVSSL-VGKT--VGLYFS-----ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284 (438)
Q Consensus 214 ~~~~~f~l-~~~g~~~~~l~~~-~gk~--vll~F~-----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~i 284 (438)
.-..++.+ +.+| +++|.++ .|+- ++-.|. ..-|+.|-..+..+.-....+..+ ++.++.|
T Consensus 44 ~v~~~Y~F~g~~G--~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r---------d~tfa~v 112 (211)
T PF05988_consen 44 EVDKDYVFDGPDG--PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR---------DTTFAVV 112 (211)
T ss_pred cCCCCeEEeCCCC--cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC---------CceEEEE
Confidence 33456888 6666 4888775 5653 333333 235999999999997667777765 7888888
Q ss_pred ecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCc-----CceeeEEEECCC-CcEEEc
Q 013684 285 STDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV-----QGIPCLVIIGPE-GKTVTK 339 (438)
Q Consensus 285 s~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v-----~~~P~~~lid~~-G~i~~~ 339 (438)
|-. ..+.+..|.+.|+|- +|........+...|++ ...|.+-+|=++ |+|...
T Consensus 113 Sra-P~~~i~afk~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhT 171 (211)
T PF05988_consen 113 SRA-PLEKIEAFKRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHT 171 (211)
T ss_pred eCC-CHHHHHHHHHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEEE
Confidence 864 678899999999997 88877777777788887 456655444344 566554
|
|
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=95.12 E-value=1.3 Score=39.10 Aligned_cols=131 Identities=26% Similarity=0.365 Sum_probs=75.8
Q ss_pred HHHhhhcCcCccceEEEecCCCCCCCcccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCCCcc
Q 013684 142 KALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLL 221 (438)
Q Consensus 142 ~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~f~l 221 (438)
.++++.+++.. |+++++.+ .+++.....+ . .+..+.+....... ..|-+.
T Consensus 31 ~~~~~~~~~~~-p~i~~~k~--~~~~~~~y~~--------~---~~~~~~l~~fI~~~---------------~~P~v~- 80 (184)
T PF13848_consen 31 EELAKKYGIKE-PTIVVYKK--FDEKPVVYDG--------D---KFTPEELKKFIKKN---------------SFPLVP- 80 (184)
T ss_dssp HHHHHHCTCSS-SEEEEEEC--TTTSEEEESS--------S---TTSHHHHHHHHHHH---------------SSTSCE-
T ss_pred HHHHHHhCCCC-CcEEEecc--CCCCceeccc--------c---cCCHHHHHHHHHHh---------------cccccc-
Confidence 57788899998 99999985 1222221111 0 12333343333222 123222
Q ss_pred CCCCCceeeccccCCCE-EEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC
Q 013684 222 GHPPDEKVPVSSLVGKT-VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 300 (438)
Q Consensus 222 ~~~g~~~~~l~~~~gk~-vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 300 (438)
..+.. .+..-.-.+++ +++.|..............+.+++++++++ +.++.+..+..
T Consensus 81 ~~t~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~----------~~f~~~d~~~~----------- 138 (184)
T PF13848_consen 81 ELTPE-NFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK----------INFVYVDADDF----------- 138 (184)
T ss_dssp EESTT-HHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT----------SEEEEEETTTT-----------
T ss_pred ccchh-hHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe----------EEEEEeehHHh-----------
Confidence 22222 11111123444 777776555566677777777787777654 67777777633
Q ss_pred CCcccccCCchhHHHHHhcCcC--ceeeEEEECCCCcE
Q 013684 301 PWLALPFGDPTIKELTKYFDVQ--GIPCLVIIGPEGKT 336 (438)
Q Consensus 301 ~~~~~p~~~d~~~~l~~~~~v~--~~P~~~lid~~G~i 336 (438)
..+.+.||+. .+|++++++.....
T Consensus 139 ------------~~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 139 ------------PRLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp ------------HHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred ------------HHHHHHcCCCCccCCEEEEEECCCCc
Confidence 4577789997 89999999855543
|
... |
| >cd02337 ZZ_CBP Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.012 Score=38.70 Aligned_cols=32 Identities=19% Similarity=0.706 Sum_probs=26.9
Q ss_pred cccCccCCCCCceeEEcCCC-CCCccCccccccC
Q 013684 399 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAVD 431 (438)
Q Consensus 399 ~~c~~C~~~~~~w~~~c~~c-~~~~~~~c~~~~~ 431 (438)
|.|+.|...+ +=+|+|..| +|||+..|-..+.
T Consensus 1 y~C~~C~~~~-~~r~~C~~C~dfDLC~~C~~~~~ 33 (41)
T cd02337 1 YTCNECKHHV-ETRWHCTVCEDYDLCITCYNTKN 33 (41)
T ss_pred CcCCCCCCcC-CCceECCCCcchhhHHHHhCCCC
Confidence 5699998854 699999999 9999999986543
|
Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear. |
| >COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.09 Score=55.33 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=55.4
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 308 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 308 (438)
+.-.+|+++|....+||-+|+.|..+- .++++-+.. .+|.|.+|+++- |..
T Consensus 39 A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~------------~FV~IKVDREER--------------PDv 92 (667)
T COG1331 39 AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE------------NFVPVKVDREER--------------PDV 92 (667)
T ss_pred HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh------------CceeeeEChhhc--------------cCH
Confidence 345689999999999999999976542 234444443 388888887531 111
Q ss_pred CchhHHHHHhc-CcCceeeEEEECCCCcEEEc
Q 013684 309 DPTIKELTKYF-DVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 309 ~d~~~~l~~~~-~v~~~P~~~lid~~G~i~~~ 339 (438)
+..-..+++.. |--|+|-++++-|+|+....
T Consensus 93 D~~Ym~~~q~~tG~GGWPLtVfLTPd~kPFfa 124 (667)
T COG1331 93 DSLYMNASQAITGQGGWPLTVFLTPDGKPFFA 124 (667)
T ss_pred HHHHHHHHHHhccCCCCceeEEECCCCceeee
Confidence 11223344443 34589999999999998864
|
|
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.075 Score=40.42 Aligned_cols=58 Identities=14% Similarity=0.303 Sum_probs=38.0
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
.+.-++.|+.+|||+|++....|.+ .| +....++++.+.+. ..+.+..+.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~-------~g--i~y~~idi~~~~~~---------------------~~~~~~~g~ 55 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE-------KG--YDFEEIPLGNDARG---------------------RSLRAVTGA 55 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH-------cC--CCcEEEECCCChHH---------------------HHHHHHHCC
Confidence 3455778999999999998776642 34 44444555544221 345556788
Q ss_pred CccceEEE
Q 013684 151 EGIPCLVV 158 (438)
Q Consensus 151 ~~~P~~~l 158 (438)
..+|.+++
T Consensus 56 ~~vP~i~i 63 (79)
T TIGR02190 56 TTVPQVFI 63 (79)
T ss_pred CCcCeEEE
Confidence 89999864
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.051 Score=42.14 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=25.5
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
++.|..+|||+|.+....|.++..+.. ++.+..++++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~ 39 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHA 39 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCC
Confidence 567889999999998877776543321 24455555553
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.012 Score=56.34 Aligned_cols=32 Identities=25% Similarity=0.692 Sum_probs=29.2
Q ss_pred cccCccCC-CCCceeEEcCCC-CCCccCcccccc
Q 013684 399 FICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRAV 430 (438)
Q Consensus 399 ~~c~~C~~-~~~~w~~~c~~c-~~~~~~~c~~~~ 430 (438)
-.||.|.+ .-.|=+|+|..| |||||.+|-.+.
T Consensus 153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~ 186 (278)
T KOG4582|consen 153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN 186 (278)
T ss_pred ccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence 58999999 779999999999 999999998653
|
|
| >PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.35 Score=45.56 Aligned_cols=133 Identities=15% Similarity=0.158 Sum_probs=78.0
Q ss_pred CCCCCcc-CCCCCceeeccc-cCCCEEEEEEecC-CChhhhhhhHHHH-HHHHHHHhhhhhcCCCCCCEEEEEEecCCCH
Q 013684 215 HDRGYLL-GHPPDEKVPVSS-LVGKTVGLYFSAR-WCIPCEKFMPKLL-SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 290 (438)
Q Consensus 215 ~~~~f~l-~~~g~~~~~l~~-~~gk~vll~F~a~-wC~~C~~~~p~l~-~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~ 290 (438)
.-|++.. +++|+ .+++.+ ++||+.||..+.+ |- ..+...+. ...++|... .+..+++|-|++.++.
T Consensus 100 yFP~l~g~tL~g~-~~~~~~~l~gkvSlV~l~s~~~g---e~~~~sw~~p~~~~~~~~------~~~~~q~v~In~~e~~ 169 (252)
T PF05176_consen 100 YFPNLQGKTLAGN-KVDTTDLLRGKVSLVCLFSSAWG---EEMVDSWTSPFLEDFLQE------PYGRVQIVEINLIENW 169 (252)
T ss_pred cCCCCccccCCCC-CcccccccCCceEEEEEeehHHH---HHHHHHHhhHHHHHHhhC------CCCceEEEEEecchHH
Confidence 3578887 88888 777654 6899766655543 42 33333322 234444432 1227899999986442
Q ss_pred H-H-HHHHH-hc-------CCCcccccCCc--hhHHHHHhcCcC--ceeeEEEECCCCcEEEcccchhhhhccccCCCCC
Q 013684 291 T-S-FESYF-GT-------MPWLALPFGDP--TIKELTKYFDVQ--GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 356 (438)
Q Consensus 291 ~-~-~~~~~-~~-------~~~~~~p~~~d--~~~~l~~~~~v~--~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~ 356 (438)
- . +..++ .. ..|-.+-+..+ ....+.+.+++. -+.-+||+|++|+|+.... | +-+
T Consensus 170 ~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWags-------G----~At 238 (252)
T PF05176_consen 170 LKSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGS-------G----PAT 238 (252)
T ss_pred HHHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCcc-------C----CCC
Confidence 1 1 11111 11 11333322222 256778888884 5678899999999998842 2 357
Q ss_pred HHHHHHHHHHHH
Q 013684 357 EAKLEFLEKQME 368 (438)
Q Consensus 357 ~~~~~~L~~~i~ 368 (438)
++.++.|.+.+.
T Consensus 239 ~~E~~~L~k~~~ 250 (252)
T PF05176_consen 239 PEELESLWKCVK 250 (252)
T ss_pred HHHHHHHHHHHh
Confidence 778888877664
|
A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane |
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.074 Score=42.51 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=34.9
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|..+|||+|++....|.+ .+.++++ +++|.+.+ .......+.+..+...+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~-------~~i~~~~--vdid~~~~-----------------~~~~~~~l~~~tg~~tvP 63 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT-------LGVNPAV--HEIDKEPA-----------------GKDIENALSRLGCSPAVP 63 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCCEE--EEcCCCcc-----------------HHHHHHHHHHhcCCCCcC
Confidence 667888999999987665543 2333554 44443322 111124555556778899
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 64 ~Vfi 67 (99)
T TIGR02189 64 AVFV 67 (99)
T ss_pred eEEE
Confidence 9754
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.098 Score=39.76 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=40.4
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh
Q 013684 239 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 318 (438)
Q Consensus 239 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 318 (438)
-++.|..+|||+|.+....|.+ . ++.+..++++.+.+ ..++.+.
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~-------~---------gi~y~~idi~~~~~--------------------~~~~~~~ 52 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKE-------K---------GYDFEEIPLGNDAR--------------------GRSLRAV 52 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHH-------c---------CCCcEEEECCCChH--------------------HHHHHHH
Confidence 4567889999999998877753 1 35555666665432 1344556
Q ss_pred cCcCceeeEEEECCCCcEE
Q 013684 319 FDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 319 ~~v~~~P~~~lid~~G~i~ 337 (438)
.|...+|.++ + +|+.+
T Consensus 53 ~g~~~vP~i~-i--~g~~i 68 (79)
T TIGR02190 53 TGATTVPQVF-I--GGKLI 68 (79)
T ss_pred HCCCCcCeEE-E--CCEEE
Confidence 7889999986 4 56655
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.06 Score=46.05 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=27.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIK 266 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~ 266 (438)
.++++++.|+.++||+|..+.|.+.++..++.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 46889999999999999999999988776553
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.0093 Score=54.23 Aligned_cols=71 Identities=21% Similarity=0.389 Sum_probs=51.9
Q ss_pred EEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 013684 238 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 317 (438)
Q Consensus 238 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 317 (438)
-+++.|+++|||.|....|+|...+.-=.+- ++.+-.|.+..+ .-+.-
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL---------~v~va~VDvt~n-----------------------pgLsG 88 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDL---------GVKVAKVDVTTN-----------------------PGLSG 88 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCC---------ceeEEEEEEEec-----------------------cccce
Confidence 4788999999999999999998776543322 455555544322 33556
Q ss_pred hcCcCceeeEEEECCCCcEEEccc
Q 013684 318 YFDVQGIPCLVIIGPEGKTVTKQG 341 (438)
Q Consensus 318 ~~~v~~~P~~~lid~~G~i~~~~~ 341 (438)
.|-+.+.||+|=+ ++|..+...|
T Consensus 89 RF~vtaLptIYHv-kDGeFrrysg 111 (248)
T KOG0913|consen 89 RFLVTALPTIYHV-KDGEFRRYSG 111 (248)
T ss_pred eeEEEecceEEEe-eccccccccC
Confidence 7888999999999 9998876543
|
|
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.076 Score=40.21 Aligned_cols=55 Identities=15% Similarity=0.367 Sum_probs=35.0
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
+..|+.+|||+|......|.+ .|.+++.+ +++.+.+ ...++.+..+...+|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~--di~~~~~--------------------~~~~~~~~~g~~~vP 51 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS-------KGVTFTEI--RVDGDPA--------------------LRDEMMQRSGRRTVP 51 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH-------cCCCcEEE--EecCCHH--------------------HHHHHHHHhCCCCcC
Confidence 356889999999998777653 33334444 4444432 114555566778899
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 52 ~i~i 55 (79)
T TIGR02181 52 QIFI 55 (79)
T ss_pred EEEE
Confidence 8754
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.067 Score=43.52 Aligned_cols=67 Identities=12% Similarity=0.152 Sum_probs=39.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+|||+|......|.+..-.. ..++++-|.-..+..++ ..++.+..
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~-----------~~~~~i~i~~~~~~~~~------------------~~~l~~~t 65 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR-----------GAYEIVDIKEFKPENEL------------------RDYFEQIT 65 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc-----------CCcEEEECCCCCCCHHH------------------HHHHHHHc
Confidence 56689999999998777665542111 13445444421121122 24566666
Q ss_pred CcCceeeEEEECCCCcEEE
Q 013684 320 DVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~~ 338 (438)
|-..+|.+ +| +|+.+.
T Consensus 66 G~~tVP~I-fI--~g~~iG 81 (108)
T PHA03050 66 GGRTVPRI-FF--GKTSIG 81 (108)
T ss_pred CCCCcCEE-EE--CCEEEe
Confidence 88899997 45 466653
|
|
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.066 Score=45.80 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=31.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEE
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 112 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~v 112 (438)
.++++++.|+..+||+|+.+.|.+.++..++. ++.+++.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP----DVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC----CceEEEE
Confidence 46899999999999999999999998876642 3555544
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.18 Score=37.49 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=38.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+..|+.++||+|......|.+ . ++.+-.++++.+.+.. .++.+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~---------~i~~~~i~i~~~~~~~-------------------~~~~~~~ 46 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------K---------GVDYEEIDVDGDPALR-------------------EEMINRS 46 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------C---------CCcEEEEECCCCHHHH-------------------HHHHHHh
Confidence 456788999999998777654 1 3556666776553322 3344556
Q ss_pred CcC-ceeeEEEECCCCcEE
Q 013684 320 DVQ-GIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~-~~P~~~lid~~G~i~ 337 (438)
|.. .+|.++ + +|+.+
T Consensus 47 ~~~~~vP~v~-i--~g~~i 62 (75)
T cd03418 47 GGRRTVPQIF-I--GDVHI 62 (75)
T ss_pred CCCCccCEEE-E--CCEEE
Confidence 666 889764 5 45555
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.095 Score=38.18 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=36.0
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|+++|||+|+.....|.+. + +.+..++++.+.+ ....+.+..+...+|
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~--i~~~~~di~~~~~--------------------~~~~l~~~~~~~~~P 52 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------G--IEFEEIDILEDGE--------------------LREELKELSGWPTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------C--CcEEEEECCCCHH--------------------HHHHHHHHhCCCCcC
Confidence 5678899999999988776653 2 4455556554432 124555666777888
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 53 ~~~~ 56 (72)
T cd02066 53 QIFI 56 (72)
T ss_pred EEEE
Confidence 7653
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.47 Score=36.32 Aligned_cols=54 Identities=15% Similarity=0.340 Sum_probs=35.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+..|..+|||+|......|.+ + ++.+-.++++.+.+.. ..+ +..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~---------gI~~~~idi~~~~~~~-------------------~~~-~~~ 46 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R---------GFDFEMINVDRVPEAA-------------------ETL-RAQ 46 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C---------CCceEEEECCCCHHHH-------------------HHH-HHc
Confidence 456788999999987766632 2 5667777777654321 222 335
Q ss_pred CcCceeeEEE
Q 013684 320 DVQGIPCLVI 329 (438)
Q Consensus 320 ~v~~~P~~~l 329 (438)
|...+|++++
T Consensus 47 g~~~vPvv~i 56 (81)
T PRK10329 47 GFRQLPVVIA 56 (81)
T ss_pred CCCCcCEEEE
Confidence 7789999854
|
|
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.097 Score=39.03 Aligned_cols=55 Identities=13% Similarity=0.223 Sum_probs=34.7
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC-cc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE-GI 153 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~-~~ 153 (438)
+..|+.+|||+|......|++ .+ +.+..++++.+.+. ..++.+..+.. .+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~i~i~~~~~~--------------------~~~~~~~~~~~~~v 52 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KG--VDYEEIDVDGDPAL--------------------REEMINRSGGRRTV 52 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CC--CcEEEEECCCCHHH--------------------HHHHHHHhCCCCcc
Confidence 467889999999997776654 33 44445555544321 14555556665 78
Q ss_pred ceEEE
Q 013684 154 PCLVV 158 (438)
Q Consensus 154 P~~~l 158 (438)
|.+++
T Consensus 53 P~v~i 57 (75)
T cd03418 53 PQIFI 57 (75)
T ss_pred CEEEE
Confidence 97654
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.13 Score=41.16 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=37.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+|||+|.+....|.+. ++.+-.+.+|.+.+... ....+.+..
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~----------------~i~~~~vdid~~~~~~~----------------~~~~l~~~t 57 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL----------------GVNPAVHEIDKEPAGKD----------------IENALSRLG 57 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----------------CCCCEEEEcCCCccHHH----------------HHHHHHHhc
Confidence 4568889999999877755532 23334455554322110 013445556
Q ss_pred CcCceeeEEEECCCCcEE
Q 013684 320 DVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~ 337 (438)
|...+|.+ ++ +|+.+
T Consensus 58 g~~tvP~V-fi--~g~~i 72 (99)
T TIGR02189 58 CSPAVPAV-FV--GGKLV 72 (99)
T ss_pred CCCCcCeE-EE--CCEEE
Confidence 78899996 46 46655
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.11 Score=46.99 Aligned_cols=101 Identities=22% Similarity=0.351 Sum_probs=73.4
Q ss_pred cccCCCCCEEecccc-CCC--EEEEEEe-----ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHh
Q 013684 55 TSTKEIGEEVKVSDL-EGK--VTALYFS-----ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRA 126 (438)
Q Consensus 55 ~~~~~~g~~v~l~~~-~gk--~vll~F~-----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~ 126 (438)
.+...+|+ ++|.++ .|+ .++..|- ...|+.|.-....+......+..++ +.++.||-. ..+.+..|.+
T Consensus 50 ~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd--~tfa~vSra-P~~~i~afk~ 125 (211)
T PF05988_consen 50 VFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARD--TTFAVVSRA-PLEKIEAFKR 125 (211)
T ss_pred EEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCC--ceEEEEeCC-CHHHHHHHHH
Confidence 37778887 898886 665 3333443 4679999999999988888888875 888877655 6678899999
Q ss_pred cCCcccccCCChHHHHHHhhhcCc-----CccceEEEecC
Q 013684 127 CMPWLAVPYSDLETKKALNRKFDI-----EGIPCLVVLQP 161 (438)
Q Consensus 127 ~~~~~~~~~~d~~~~~~l~~~~~v-----~~~P~~~lvd~ 161 (438)
.|+|...-++..+ ..+...|++ ...|.+-++-+
T Consensus 126 rmGW~~pw~Ss~g--s~Fn~D~~~~~~~~~~~~g~svF~R 163 (211)
T PF05988_consen 126 RMGWTFPWYSSYG--SDFNYDFGVSFDEGGEMPGLSVFLR 163 (211)
T ss_pred hcCCCceEEEcCC--CcccccccceeccCCCceeEEEEEE
Confidence 9999843343332 455566776 46777777776
|
|
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.12 Score=39.17 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=38.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcC
Q 013684 241 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 320 (438)
Q Consensus 241 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 320 (438)
..|+.+|||+|......|.+. ++.+-.++++.+.+.. .++.+..|
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~----------------~i~~~~~di~~~~~~~-------------------~~~~~~~g 46 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK----------------GVTFTEIRVDGDPALR-------------------DEMMQRSG 46 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc----------------CCCcEEEEecCCHHHH-------------------HHHHHHhC
Confidence 467889999999988877642 3445555665553221 34555567
Q ss_pred cCceeeEEEECCCCcEE
Q 013684 321 VQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 321 v~~~P~~~lid~~G~i~ 337 (438)
...+|++ ++ +|+.+
T Consensus 47 ~~~vP~i-~i--~g~~i 60 (79)
T TIGR02181 47 RRTVPQI-FI--GDVHV 60 (79)
T ss_pred CCCcCEE-EE--CCEEE
Confidence 8889996 45 45554
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.24 Score=39.83 Aligned_cols=75 Identities=16% Similarity=0.313 Sum_probs=52.3
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
.++++|+=..+.||........+++.++...+ ++.+..+.+-... +....+
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~----------~~~~y~l~v~~~R-------------------~vSn~I 69 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPD----------EIPVYYLDVIEYR-------------------PVSNAI 69 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT--------------EEEEEGGGGH-------------------HHHHHH
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc----------cceEEEEEEEeCc-------------------hhHHHH
Confidence 57888888899999998888888877776553 2678888775443 224789
Q ss_pred HHhcCcC-ceeeEEEECCCCcEEEcc
Q 013684 316 TKYFDVQ-GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 316 ~~~~~v~-~~P~~~lid~~G~i~~~~ 340 (438)
++.|||. .-|.++|| ++|++++..
T Consensus 70 Ae~~~V~HeSPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 70 AEDFGVKHESPQVILI-KNGKVVWHA 94 (105)
T ss_dssp HHHHT----SSEEEEE-ETTEEEEEE
T ss_pred HHHhCCCcCCCcEEEE-ECCEEEEEC
Confidence 9999996 68999999 999999864
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.19 Score=44.54 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=65.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+..-|++.||-+.-..|+-+-.+|..|++++-+ .++|-|++... .-
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-----------TrFikvnae~~-----------------------PF 128 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-----------TRFIKVNAEKA-----------------------PF 128 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc-----------ceEEEEecccC-----------------------ce
Confidence 456799999999888999999999999988764 46787777643 45
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHH
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEF 362 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~ 362 (438)
+..+++|+.+|++.++ ++|+.+.+-.+.. ..|... .|+.+.++.
T Consensus 129 lv~kL~IkVLP~v~l~-k~g~~~D~iVGF~--dLGnkD-dF~te~LE~ 172 (211)
T KOG1672|consen 129 LVTKLNIKVLPTVALF-KNGKTVDYVVGFT--DLGNKD-DFTTETLEN 172 (211)
T ss_pred eeeeeeeeEeeeEEEE-EcCEEEEEEeeHh--hcCCCC-cCcHHHHHH
Confidence 6788999999999999 8998776533222 234321 355555543
|
|
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.18 Score=43.65 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=39.6
Q ss_pred eeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 229 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 229 ~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
+.+.+-.++++|+.|+...||+|..+.+.+.++.+++-+. +.+.+++..+-
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~--------~~v~~~~~~~~ 55 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDP--------GKVKFVFRPVP 55 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEESS
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCC--------CceEEEEEEcc
Confidence 4455566789999999999999999999999999998321 25888888773
|
... |
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.17 Score=43.78 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=39.5
Q ss_pred eccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 65 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 65 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
.+-.-.++++|+.|+...||+|+.+.+.+.++.+++-+.| ++.+++..+-
T Consensus 6 ~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~ 55 (162)
T PF13462_consen 6 TIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVP 55 (162)
T ss_dssp EES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESS
T ss_pred eecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEcc
Confidence 3444567899999999999999999999999999985554 5888887663
|
... |
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.39 Score=35.62 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=34.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcC
Q 013684 241 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 320 (438)
Q Consensus 241 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 320 (438)
..|..++||+|......|.+ . ++.+-.++++.+.+.. ..+. ..|
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~---------~i~~~~~di~~~~~~~-------------------~~~~-~~g 45 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------H---------GIAFEEINIDEQPEAI-------------------DYVK-AQG 45 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------C---------CCceEEEECCCCHHHH-------------------HHHH-HcC
Confidence 45678999999998877753 2 4566667776554321 2222 347
Q ss_pred cCceeeEEE
Q 013684 321 VQGIPCLVI 329 (438)
Q Consensus 321 v~~~P~~~l 329 (438)
...+|.+++
T Consensus 46 ~~~vP~v~~ 54 (72)
T TIGR02194 46 FRQVPVIVA 54 (72)
T ss_pred CcccCEEEE
Confidence 888999644
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.2 Score=37.11 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=34.9
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|..+|||.|.+....|.+ .| +.+..++++.+.. ...+....+...+|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~--i~~~~~~v~~~~~---------------------~~~~~~~~g~~~vP 52 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NG--ISYEEIPLGKDIT---------------------GRSLRAVTGAMTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cC--CCcEEEECCCChh---------------------HHHHHHHhCCCCcC
Confidence 567889999999998666653 33 4444555554321 13455556888999
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 53 ~ifi 56 (72)
T cd03029 53 QVFI 56 (72)
T ss_pred eEEE
Confidence 8754
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.3 Score=36.32 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=40.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+|||+|+.....|.+ . ++.+..++++.+.+. ..++.+..
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~---------gi~~~~~di~~~~~~-------------------~~el~~~~ 47 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------K---------GLPYVEINIDIFPER-------------------KAELEERT 47 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------C---------CCceEEEECCCCHHH-------------------HHHHHHHh
Confidence 456778999999988776664 2 456667777655432 24556666
Q ss_pred CcCceeeEEEECCCCcEEE
Q 013684 320 DVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~~ 338 (438)
+-..+|.+ ++ +|+.+.
T Consensus 48 g~~~vP~v-~i--~~~~iG 63 (73)
T cd03027 48 GSSVVPQI-FF--NEKLVG 63 (73)
T ss_pred CCCCcCEE-EE--CCEEEe
Confidence 77788887 45 456654
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.17 Score=48.06 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=50.6
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+-+|||.||-+.++.|..+...|..++.++.. +.++-|..... . +...|..
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~------------------------~-~~~~f~~ 196 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKC------------------------P-ASENFPD 196 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGC------------------------C-TTTTS-T
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhcc------------------------C-cccCCcc
Confidence 45899999999999999999999999999954 66777755421 1 3456888
Q ss_pred CccceEEEecCCCCCCCccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..+|+++++. +|.++...
T Consensus 197 ~~LPtllvYk----~G~l~~~~ 214 (265)
T PF02114_consen 197 KNLPTLLVYK----NGDLIGNF 214 (265)
T ss_dssp TC-SEEEEEE----TTEEEEEE
T ss_pred cCCCEEEEEE----CCEEEEeE
Confidence 9999999988 78776543
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.3 Score=36.16 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=38.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+|||+|.+....|.+ . ++.+..++++.+.+ ...+.+..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~---------~i~~~~~~v~~~~~--------------------~~~~~~~~ 46 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------N---------GISYEEIPLGKDIT--------------------GRSLRAVT 46 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------c---------CCCcEEEECCCChh--------------------HHHHHHHh
Confidence 456788999999998666653 1 35556666664431 13445556
Q ss_pred CcCceeeEEEECCCCcEE
Q 013684 320 DVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~ 337 (438)
|...+|.+ ++ +|+.+
T Consensus 47 g~~~vP~i-fi--~g~~i 61 (72)
T cd03029 47 GAMTVPQV-FI--DGELI 61 (72)
T ss_pred CCCCcCeE-EE--CCEEE
Confidence 88999996 56 45555
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.019 Score=52.28 Aligned_cols=68 Identities=18% Similarity=0.346 Sum_probs=50.6
Q ss_pred CEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC
Q 013684 72 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 151 (438)
Q Consensus 72 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 151 (438)
--.++.|+|+|||.|+...|.|...+.--.+-+ +.+-.|.+-.. .-|.-+|-+.
T Consensus 40 gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~--v~va~VDvt~n------------------------pgLsGRF~vt 93 (248)
T KOG0913|consen 40 GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLG--VKVAKVDVTTN------------------------PGLSGRFLVT 93 (248)
T ss_pred hHHHHHhcCCCCccccchHHHHhccCCccCCCc--eeEEEEEEEec------------------------cccceeeEEE
Confidence 356899999999999999999988777654433 56655544322 4566778899
Q ss_pred ccceEEEecCCCCCCCcc
Q 013684 152 GIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 152 ~~P~~~lvd~~~~~G~v~ 169 (438)
+.|+.|=+. +|...
T Consensus 94 aLptIYHvk----DGeFr 107 (248)
T KOG0913|consen 94 ALPTIYHVK----DGEFR 107 (248)
T ss_pred ecceEEEee----ccccc
Confidence 999999877 67654
|
|
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.31 Score=37.34 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=23.8
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCH
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 118 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~ 118 (438)
+..|..+|||+|......|. +.| +.+-.++++.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~-------~~g--I~~~~idi~~~~ 37 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAME-------SRG--FDFEMINVDRVP 37 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHH-------HCC--CceEEEECCCCH
Confidence 56788999999999776663 344 555555666543
|
|
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.61 Score=39.70 Aligned_cols=118 Identities=17% Similarity=0.208 Sum_probs=77.1
Q ss_pred hhhcCCCCCcc-CCC------CCceeeccc-cCCCEEEEEEecC--CChhhhh-hhHHHHHHHHHHHhhhhhcCCCCCCE
Q 013684 211 LLTNHDRGYLL-GHP------PDEKVPVSS-LVGKTVGLYFSAR--WCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDF 279 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~------g~~~~~l~~-~~gk~vll~F~a~--wC~~C~~-~~p~l~~l~~~~~~~~~~~~~~~~~~ 279 (438)
.+|+..|+-++ ..- |-..++..+ ++||.|+| |..| ..|.|-. .+|.+.+++++|+.+ ++
T Consensus 4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~k---------GV 73 (165)
T COG0678 4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAK---------GV 73 (165)
T ss_pred ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHc---------CC
Confidence 35666676655 221 111233333 56777666 5544 6788887 899999999999976 33
Q ss_pred -EEEEEecCCCHHHHHHHHhcCCCc-ccccCCchhHHHHHhcCc-----------CceeeEEEECCCCcEEEcc
Q 013684 280 -EVVFVSTDRDQTSFESYFGTMPWL-ALPFGDPTIKELTKYFDV-----------QGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 280 -~vv~is~d~~~~~~~~~~~~~~~~-~~p~~~d~~~~l~~~~~v-----------~~~P~~~lid~~G~i~~~~ 340 (438)
.|+.||++ +.-.+.+|.+..+.- ++.+..|.+.++.+..|. ++.....++ ++|.+..-+
T Consensus 74 D~I~cVSVN-D~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 74 DEIYCVSVN-DAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred ceEEEEEeC-cHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence 36666776 555555665555433 677778888888888654 566667778 899887653
|
|
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.23 Score=36.93 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=35.4
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|..+|||.|++....|.+ .| +.+..++++.+.+. ..++.+..+-..+|
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~~--------------------~~el~~~~g~~~vP 53 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPER--------------------KAELEERTGSSVVP 53 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHHH--------------------HHHHHHHhCCCCcC
Confidence 456788999999997766654 34 44455565544321 24566666667788
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 54 ~v~i 57 (73)
T cd03027 54 QIFF 57 (73)
T ss_pred EEEE
Confidence 8755
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ | Back alignment and domain information |
|---|
Probab=93.03 E-value=1.6 Score=37.70 Aligned_cols=119 Identities=14% Similarity=0.177 Sum_probs=70.4
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHH-HHhhhhhcCCCCCCEEEEEE-ecCCC----HHHHHHHH----
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQK-IKQNLVEKGDALEDFEVVFV-STDRD----QTSFESYF---- 297 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-~~~~~~~~~~~~~~~~vv~i-s~d~~----~~~~~~~~---- 297 (438)
.++.+.+.||+.+|...|-.-..=....|.+..+.+. |.. +.++...| ++|+. ..-++..+
T Consensus 29 ~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~---------d~yqtttIiN~dDAi~gt~~fVrss~e~~k 99 (160)
T PF09695_consen 29 PWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPH---------DKYQTTTIINLDDAIWGTGGFVRSSAEDSK 99 (160)
T ss_pred ccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCc---------cceeEEEEEecccccccchHHHHHHHHHhh
Confidence 6667788999988887765433333344444444333 432 24565554 55431 11122333
Q ss_pred hcCCCcccccCCchhHHHHHhcCcCc-eeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHH
Q 013684 298 GTMPWLALPFGDPTIKELTKYFDVQG-IPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQME 368 (438)
Q Consensus 298 ~~~~~~~~p~~~d~~~~l~~~~~v~~-~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~ 368 (438)
++++|-. +..|.++.+.+.|+... --.++++|++|+|+... .| ..+++.+++..+.|+
T Consensus 100 k~~p~s~--~vlD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k-------~G----~Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 100 KEFPWSQ--FVLDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVK-------EG----ALSPAEVQQVIALLK 158 (160)
T ss_pred hhCCCcE--EEEcCCCceeccccCCCCCceEEEEcCCccEEEEE-------CC----CCCHHHHHHHHHHHh
Confidence 2344433 34556677888888753 34688999999999863 23 578888877766654
|
|
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.33 Score=36.04 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=23.2
Q ss_pred EEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCH
Q 013684 76 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 118 (438)
Q Consensus 76 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~ 118 (438)
..|..++||+|+.....|.+ .| +.+-.++++.+.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~~ 35 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQP 35 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCCH
Confidence 56788999999998776653 34 445555666543
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.4 Score=43.97 Aligned_cols=106 Identities=16% Similarity=0.172 Sum_probs=72.9
Q ss_pred EEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCC-CCEEEEEEecCCCHHHHH--HhHhcCCccccc-CCCh
Q 013684 63 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNG-SDFEVVFVSSDEDLNAFN--NYRACMPWLAVP-YSDL 138 (438)
Q Consensus 63 ~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~-~~~~iv~vs~D~~~~~~~--~~~~~~~~~~~~-~~d~ 138 (438)
...+.+.+|+++||-+--.+|..|...+..|..|..+|...| .|+.++.|+--.....+. +.....+- .+| |-..
T Consensus 18 ~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~-~ipVyqq~ 96 (238)
T PF04592_consen 18 QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSE-HIPVYQQD 96 (238)
T ss_pred chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCC-CCceecCC
Confidence 456788899999999999999999999999999999998887 367777777643333332 22233331 122 2112
Q ss_pred HHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 139 ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 139 ~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.....+...++-. -=-++|+|+ -|++.+.-.
T Consensus 97 ~~q~dvW~~L~G~-kdD~~iyDR---CGrL~~~i~ 127 (238)
T PF04592_consen 97 ENQPDVWELLNGS-KDDFLIYDR---CGRLTYHIP 127 (238)
T ss_pred ccccCHHHHhCCC-cCcEEEEec---cCcEEEEec
Confidence 2235677777665 345788998 999886643
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.55 Score=37.79 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=51.9
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
..++++|+=.++.||........|.+.++...+. +.+.++.+-..+. ....+++.||
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R~--------------------vSn~IAe~~~ 74 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYRP--------------------VSNAIAEDFG 74 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHH--------------------HHHHHHHHHT
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCch--------------------hHHHHHHHhC
Confidence 3589999999999999999888888888776432 6777776643332 3489999999
Q ss_pred cCc-cceEEEecCCCCCCCccccc
Q 013684 150 IEG-IPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~-~P~~~lvd~~~~~G~v~~~~ 172 (438)
|.. -|-++||. +|+++...
T Consensus 75 V~HeSPQ~ili~----~g~~v~~a 94 (105)
T PF11009_consen 75 VKHESPQVILIK----NGKVVWHA 94 (105)
T ss_dssp ----SSEEEEEE----TTEEEEEE
T ss_pred CCcCCCcEEEEE----CCEEEEEC
Confidence 975 79999998 88887653
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.47 Score=36.19 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=22.5
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
++.|.-++||+|.+....|. ..|.+++.+-+..+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~ 36 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDD 36 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCC
Confidence 56788899999999776655 44444555544433
|
|
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.69 Score=35.34 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=39.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+..|..+|||+|.+....|.+. ++.+..++++.+.+. ..++.+..
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~----------------gi~y~~~dv~~~~~~-------------------~~~l~~~~ 48 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK----------------GVSFQEIPIDGDAAK-------------------REEMIKRS 48 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc----------------CCCcEEEECCCCHHH-------------------HHHHHHHh
Confidence 4466789999999987776642 344555666654321 13455566
Q ss_pred CcCceeeEEEECCCCcEEE
Q 013684 320 DVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~~ 338 (438)
|...+|+++ + +|+.+.
T Consensus 49 g~~~vP~i~-~--~g~~ig 64 (83)
T PRK10638 49 GRTTVPQIF-I--DAQHIG 64 (83)
T ss_pred CCCCcCEEE-E--CCEEEe
Confidence 788899774 4 576663
|
|
| >KOG3414 consensus Component of the U4/U6 | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.63 Score=38.27 Aligned_cols=65 Identities=18% Similarity=0.426 Sum_probs=51.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
..|.|+|-|.-.|-|.|..+-..|.++.+.+.+- .+|..+.+|+. ..+-+.|+
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV------------------------~~~~~~~~ 74 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEV------------------------PDFVKMYE 74 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchh------------------------hhhhhhhc
Confidence 4589999999999999999999999999998654 45555555533 56667789
Q ss_pred cCccceEEEecC
Q 013684 150 IEGIPCLVVLQP 161 (438)
Q Consensus 150 v~~~P~~~lvd~ 161 (438)
+...|++.++=.
T Consensus 75 l~~p~tvmfFfn 86 (142)
T KOG3414|consen 75 LYDPPTVMFFFN 86 (142)
T ss_pred ccCCceEEEEEc
Confidence 998888877764
|
U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] |
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.51 Score=36.80 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=39.2
Q ss_pred CCCEEEEEEec----CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 013684 235 VGKTVGLYFSA----RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 310 (438)
Q Consensus 235 ~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 310 (438)
+++.|+|+--. +|||+|......|.+. ++.+..++++.+.+ .
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~----------------~i~y~~idv~~~~~-~----------------- 51 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL----------------GVDFGTFDILEDEE-V----------------- 51 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc----------------CCCeEEEEcCCCHH-H-----------------
Confidence 34455554332 6999999877766543 23445555554432 1
Q ss_pred hhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 311 TIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 311 ~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
...+.+..|...+|.+ ++ +|+.+
T Consensus 52 -~~~l~~~~g~~tvP~v-fi--~g~~i 74 (90)
T cd03028 52 -RQGLKEYSNWPTFPQL-YV--NGELV 74 (90)
T ss_pred -HHHHHHHhCCCCCCEE-EE--CCEEE
Confidence 2456666788899997 45 46665
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >cd02336 ZZ_RSC8 Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.096 Score=35.17 Aligned_cols=32 Identities=22% Similarity=0.640 Sum_probs=28.5
Q ss_pred cccCccCCCCCceeEEcCCC-CCCccCcccccc
Q 013684 399 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAV 430 (438)
Q Consensus 399 ~~c~~C~~~~~~w~~~c~~c-~~~~~~~c~~~~ 430 (438)
|.|+.|...-..=+|||..+ +|||++.|-.+.
T Consensus 1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~G 33 (45)
T cd02336 1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQEG 33 (45)
T ss_pred CcccCCCCccCceEEEecCCCccccChHHHhCc
Confidence 57999999999999999999 799999997643
|
Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding. |
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.59 Score=37.11 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=38.5
Q ss_pred CEEEEEEe----cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 237 KTVGLYFS----ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 237 k~vll~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
+.|+|+-. ++|||+|.+....|.+. ++.+..++++.+.+ . .
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----------------~i~~~~~di~~~~~-~------------------~ 56 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKAC----------------GVPFAYVNVLEDPE-I------------------R 56 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHc----------------CCCEEEEECCCCHH-H------------------H
Confidence 44555443 38999999877766542 34455566654432 1 2
Q ss_pred HHHHHhcCcCceeeEEEECCCCcEEE
Q 013684 313 KELTKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 313 ~~l~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
..+.+..|...+|.++ + +|+.+.
T Consensus 57 ~~l~~~tg~~tvP~vf-i--~g~~iG 79 (97)
T TIGR00365 57 QGIKEYSNWPTIPQLY-V--KGEFVG 79 (97)
T ss_pred HHHHHHhCCCCCCEEE-E--CCEEEe
Confidence 3455566778899875 5 466553
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.68 Score=38.54 Aligned_cols=45 Identities=27% Similarity=0.529 Sum_probs=36.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
+.|+|+|-|.-.|-|.|.++-..|.++++++++- ..|..++.++-
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~V 63 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEV 63 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccc
Confidence 4699999999999999999999999999998654 56666666643
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A. |
| >KOG3414 consensus Component of the U4/U6 | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.92 Score=37.34 Aligned_cols=62 Identities=23% Similarity=0.488 Sum_probs=49.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEE-EecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF-VSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~-is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
..|.|+|-|.-.|=|.|..+-..|.++++.+++ +.+|. +.+|+ -+
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn-----------fa~Iylvdide-----------------------V~ 67 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN-----------FAVIYLVDIDE-----------------------VP 67 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhh-----------ceEEEEEecch-----------------------hh
Confidence 357899999999999999999999999999874 34444 44442 26
Q ss_pred HHHHhcCcCceeeEEEE
Q 013684 314 ELTKYFDVQGIPCLVII 330 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~li 330 (438)
.+.+.|++...|+++++
T Consensus 68 ~~~~~~~l~~p~tvmfF 84 (142)
T KOG3414|consen 68 DFVKMYELYDPPTVMFF 84 (142)
T ss_pred hhhhhhcccCCceEEEE
Confidence 77889999999977665
|
U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] |
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.42 Score=37.30 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=35.8
Q ss_pred CCCEEEEEEec----cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 70 EGKVTALYFSA----NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 70 ~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+++.|+|+--. +|||+|+.....|.+ .+.+++.+ +++.+.+ ....+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~-------~~i~y~~i--dv~~~~~--------------------~~~~l~ 56 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQ-------LGVDFGTF--DILEDEE--------------------VRQGLK 56 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHH-------cCCCeEEE--EcCCCHH--------------------HHHHHH
Confidence 44566666443 799999987665544 23234444 4443322 225666
Q ss_pred hhcCcCccceEEE
Q 013684 146 RKFDIEGIPCLVV 158 (438)
Q Consensus 146 ~~~~v~~~P~~~l 158 (438)
+..+-..+|.+++
T Consensus 57 ~~~g~~tvP~vfi 69 (90)
T cd03028 57 EYSNWPTFPQLYV 69 (90)
T ss_pred HHhCCCCCCEEEE
Confidence 7678888999754
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.72 Score=37.66 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCc
Q 013684 258 LLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV 321 (438)
Q Consensus 258 l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 321 (438)
|.+...++... ++++|.|.+... +..++|.+... ..+|+..|....+.+.+|+
T Consensus 2 L~~~~~~l~~~---------gv~lv~I~~g~~-~~~~~f~~~~~-~p~~ly~D~~~~lY~~lg~ 54 (115)
T PF13911_consen 2 LSRRKPELEAA---------GVKLVVIGCGSP-EGIEKFCELTG-FPFPLYVDPERKLYKALGL 54 (115)
T ss_pred hhHhHHHHHHc---------CCeEEEEEcCCH-HHHHHHHhccC-CCCcEEEeCcHHHHHHhCC
Confidence 34455566554 789999998744 34888887655 5788888888888888776
|
|
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.32 Score=41.38 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=68.4
Q ss_pred HhhccchhHHHHHhhcccccCC------CC-CEEecccc-CCCEEEEEE-eccCCccchh-hHHHHHHHHHHHhcCCCCE
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKE------IG-EEVKVSDL-EGKVTALYF-SANWYPPCGN-FTGVLVDVYEELRNNGSDF 107 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~------~g-~~v~l~~~-~gk~vll~F-~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~ 107 (438)
.+|..+|..+ +... .| ..++..++ +||.|+|+= -+...|.|.. .+|-+.+++++|+.+|. -
T Consensus 4 ~vg~klP~vt--------f~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGV-D 74 (165)
T COG0678 4 MVGKKLPAVT--------FKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGV-D 74 (165)
T ss_pred ccCCcCCceE--------eEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCC-c
Confidence 4677777766 4444 22 22444444 677654432 2445588887 79999999999999883 2
Q ss_pred EEEEEecCCCHHHHHHhHhcC----CcccccCCChHHHHHHhhhc-----------CcCccceEEEecCCCCCCCccccc
Q 013684 108 EVVFVSSDEDLNAFNNYRACM----PWLAVPYSDLETKKALNRKF-----------DIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 108 ~iv~vs~D~~~~~~~~~~~~~----~~~~~~~~d~~~~~~l~~~~-----------~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.|+-||++ +......+.+.. ....++... .++.+.. |++......+|. ||.+..-.
T Consensus 75 ~I~cVSVN-D~FVm~AWak~~g~~~~I~fi~Dg~----geFTk~~Gm~~d~~~~g~G~RS~RYsmvV~----nGvV~~~~ 145 (165)
T COG0678 75 EIYCVSVN-DAFVMNAWAKSQGGEGNIKFIPDGN----GEFTKAMGMLVDKSDLGFGVRSWRYSMVVE----NGVVEKLF 145 (165)
T ss_pred eEEEEEeC-cHHHHHHHHHhcCCCccEEEecCCC----chhhhhcCceeecccCCcceeeeeEEEEEe----CCeEEEEE
Confidence 66777777 344444444433 233344322 3444443 344555566666 77665443
Q ss_pred c
Q 013684 173 G 173 (438)
Q Consensus 173 ~ 173 (438)
.
T Consensus 146 i 146 (165)
T COG0678 146 I 146 (165)
T ss_pred e
Confidence 3
|
|
| >PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.15 Score=35.46 Aligned_cols=35 Identities=31% Similarity=0.633 Sum_probs=27.7
Q ss_pred CCcccCccCCCC---CceeEEcCCCCCCccCccccccC
Q 013684 397 GPFICCDCDEQG---SGWAYQCLECGYEVHPKCVRAVD 431 (438)
Q Consensus 397 ~~~~c~~C~~~~---~~w~~~c~~c~~~~~~~c~~~~~ 431 (438)
.+-.|+.|++.- ..-.|+|..|++-.|.+|....+
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~ 47 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVP 47 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSS
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcC
Confidence 567999999887 56679999999999999997553
|
Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A .... |
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.46 Score=42.96 Aligned_cols=93 Identities=18% Similarity=0.360 Sum_probs=67.4
Q ss_pred CCCCcc-CCCCCceeecccc-CCCEEEE---EEecC----CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 216 DRGYLL-GHPPDEKVPVSSL-VGKTVGL---YFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 216 ~~~f~l-~~~g~~~~~l~~~-~gk~vll---~F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
..++.+ +.+|+ .+|+++ .||-.|| ++++| -||.|-..+.++.-....+... ++.++.||-
T Consensus 52 ~K~Y~Fe~~~G~--~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~---------dv~lv~VsR 120 (247)
T COG4312 52 DKDYVFETENGK--KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH---------DVTLVAVSR 120 (247)
T ss_pred cceeEeecCCcc--hhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc---------CceEEEEec
Confidence 456777 66664 778775 5653332 33455 4999999999998777777654 788888885
Q ss_pred CCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCc
Q 013684 287 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV 321 (438)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 321 (438)
- ..+++..+-+.|+|- ||........+...|.+
T Consensus 121 A-Pl~~l~~~k~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 121 A-PLEELVAYKRRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred C-cHHHHHHHHHhcCCc-ceeEeccCccccccccc
Confidence 3 678888898999997 88877766777777755
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.54 Score=49.33 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=45.5
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
..+.+..-+..|..++||+|......+++++... .+++.-.| |.... .++.+
T Consensus 112 ~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~----~~i~~~~i--d~~~~----------------------~~~~~ 163 (517)
T PRK15317 112 KALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN----PNITHTMI--DGALF----------------------QDEVE 163 (517)
T ss_pred HhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC----CCceEEEE--EchhC----------------------HhHHH
Confidence 4445567799999999999998888877766652 23554444 32221 67788
Q ss_pred hcCcCccceEEE
Q 013684 147 KFDIEGIPCLVV 158 (438)
Q Consensus 147 ~~~v~~~P~~~l 158 (438)
.|++.++|++++
T Consensus 164 ~~~v~~VP~~~i 175 (517)
T PRK15317 164 ARNIMAVPTVFL 175 (517)
T ss_pred hcCCcccCEEEE
Confidence 899999999875
|
|
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.35 Score=42.59 Aligned_cols=41 Identities=27% Similarity=0.351 Sum_probs=33.6
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
.+++.++.|+...||+|+.+.+.+.++.+++.. ++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~---~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK---DVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC---CceEEEcC
Confidence 679999999999999999999999999888733 35555443
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.84 Score=36.75 Aligned_cols=63 Identities=27% Similarity=0.355 Sum_probs=37.4
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
+|.|.-+||++|......|.+ .+.+..++-++-+.+.. ..+..+.+.-+-..+|
T Consensus 16 VVifSKs~C~~c~~~k~ll~~-------~~v~~~vvELD~~~~g~-------------------eiq~~l~~~tg~~tvP 69 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD-------LGVNPKVVELDEDEDGS-------------------EIQKALKKLTGQRTVP 69 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh-------CCCCCEEEEccCCCCcH-------------------HHHHHHHHhcCCCCCC
Confidence 566888999999995444443 33335555443332222 2234455555667899
Q ss_pred eEEEecCCCCCCCcc
Q 013684 155 CLVVLQPYDDKDDAT 169 (438)
Q Consensus 155 ~~~lvd~~~~~G~v~ 169 (438)
.+|+ +|+.+
T Consensus 70 ~vFI------~Gk~i 78 (104)
T KOG1752|consen 70 NVFI------GGKFI 78 (104)
T ss_pred EEEE------CCEEE
Confidence 9887 66665
|
|
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.66 Score=35.45 Aligned_cols=55 Identities=13% Similarity=0.266 Sum_probs=34.7
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
+..|..+|||+|++....|.+ .| +....+++|.+.+ ...++.+..+...+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~g--i~y~~~dv~~~~~--------------------~~~~l~~~~g~~~vP 54 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KG--VSFQEIPIDGDAA--------------------KREEMIKRSGRTTVP 54 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cC--CCcEEEECCCCHH--------------------HHHHHHHHhCCCCcC
Confidence 557778999999997766653 33 3334455554422 114556666778899
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 55 ~i~~ 58 (83)
T PRK10638 55 QIFI 58 (83)
T ss_pred EEEE
Confidence 7744
|
|
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.73 Score=36.57 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=35.1
Q ss_pred CCEEEEEEe----ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 71 GKVTALYFS----ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 71 gk~vll~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
.+.|+|+-. ++|||+|.+....|.+ .|.+++ .++++.+.+ ....+.+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~--~~di~~~~~--------------------~~~~l~~ 61 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFA--YVNVLEDPE--------------------IRQGIKE 61 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEE--EEECCCCHH--------------------HHHHHHH
Confidence 345555544 3899999997666554 232344 445543322 1245666
Q ss_pred hcCcCccceEEE
Q 013684 147 KFDIEGIPCLVV 158 (438)
Q Consensus 147 ~~~v~~~P~~~l 158 (438)
..|-..+|.+++
T Consensus 62 ~tg~~tvP~vfi 73 (97)
T TIGR00365 62 YSNWPTIPQLYV 73 (97)
T ss_pred HhCCCCCCEEEE
Confidence 667778998865
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=89.66 E-value=2.1 Score=36.02 Aligned_cols=67 Identities=19% Similarity=0.386 Sum_probs=46.0
Q ss_pred CEEEEEEecC--CChh-hh-hhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 237 KTVGLYFSAR--WCIP-CE-KFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 237 k~vll~F~a~--wC~~-C~-~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
..-+|.|.-. .|.. +. .....|.+++++|+++ .+.+++++.+..
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk---------~i~Fv~vd~~~~----------------------- 68 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK---------PWGWLWTEAGAQ----------------------- 68 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC---------cEEEEEEeCccc-----------------------
Confidence 3555656432 2332 32 3677788889888864 477888877754
Q ss_pred HHHHHhcCcC--ceeeEEEECCCCc
Q 013684 313 KELTKYFDVQ--GIPCLVIIGPEGK 335 (438)
Q Consensus 313 ~~l~~~~~v~--~~P~~~lid~~G~ 335 (438)
..+.+.||+. ++|++++++.++.
T Consensus 69 ~~~~~~fgl~~~~~P~v~i~~~~~~ 93 (130)
T cd02983 69 LDLEEALNIGGFGYPAMVAINFRKM 93 (130)
T ss_pred HHHHHHcCCCccCCCEEEEEecccC
Confidence 3478889985 5999999988765
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.44 E-value=0.62 Score=42.15 Aligned_cols=90 Identities=21% Similarity=0.352 Sum_probs=62.6
Q ss_pred cccCCCCCEEecccc-CCCEEEE---EEec----cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHh
Q 013684 55 TSTKEIGEEVKVSDL-EGKVTAL---YFSA----NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRA 126 (438)
Q Consensus 55 ~~~~~~g~~v~l~~~-~gk~vll---~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~ 126 (438)
.+...+|+ .+|.++ .||-.|| ++++ ..|+.|.-....+.-....+...+ +.++.||-- ..+++..+.+
T Consensus 56 ~Fe~~~G~-~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~d--v~lv~VsRA-Pl~~l~~~k~ 131 (247)
T COG4312 56 VFETENGK-KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHD--VTLVAVSRA-PLEELVAYKR 131 (247)
T ss_pred EeecCCcc-hhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcC--ceEEEEecC-cHHHHHHHHH
Confidence 46677885 788886 6663333 2333 479999999999988888887754 888888644 6678889999
Q ss_pred cCCcccccCCChHHHHHHhhhcCc
Q 013684 127 CMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 127 ~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
.|+|..-.+++.+ ..+...|++
T Consensus 132 rmGW~f~w~Ss~~--s~Fn~Df~v 153 (247)
T COG4312 132 RMGWQFPWVSSTD--SDFNRDFQV 153 (247)
T ss_pred hcCCcceeEeccC--ccccccccc
Confidence 9999854454433 445555655
|
|
| >PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=89.12 E-value=2.4 Score=35.39 Aligned_cols=59 Identities=20% Similarity=0.396 Sum_probs=44.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
..|.|+|-|.-.|=|.|.++-..|.+++++.+.- ..|..+.++.- +.
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~----------a~IY~vDi~~V-----------------------pd 65 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF----------AVIYLVDIDEV-----------------------PD 65 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT----------EEEEEEETTTT-----------------------HC
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc----------eEEEEEEcccc-----------------------hh
Confidence 4689999999999999999999999999998743 44555566533 45
Q ss_pred HHHhcCcCceeeE
Q 013684 315 LTKYFDVQGIPCL 327 (438)
Q Consensus 315 l~~~~~v~~~P~~ 327 (438)
+.++|.+. .|.+
T Consensus 66 fn~~yel~-dP~t 77 (133)
T PF02966_consen 66 FNQMYELY-DPCT 77 (133)
T ss_dssp CHHHTTS--SSEE
T ss_pred hhcccccC-CCeE
Confidence 67788888 6744
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A. |
| >PRK10824 glutaredoxin-4; Provisional | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.63 Score=38.23 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=37.6
Q ss_pred CCEEEEEEec----cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 71 GKVTALYFSA----NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 71 gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
...|+|+--. +|||+|++....|.+. +.++..+ .++.+.+ ....+.+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-------~i~~~~i--di~~d~~--------------------~~~~l~~ 64 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC-------GERFAYV--DILQNPD--------------------IRAELPK 64 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc-------CCCceEE--EecCCHH--------------------HHHHHHH
Confidence 3455555443 6999999977766553 2234444 4443322 1144445
Q ss_pred hcCcCccceEEEecCCCCCCCcc
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
.-+-..+|..|+ +|+.+
T Consensus 65 ~sg~~TVPQIFI------~G~~I 81 (115)
T PRK10824 65 YANWPTFPQLWV------DGELV 81 (115)
T ss_pred HhCCCCCCeEEE------CCEEE
Confidence 556678898887 56555
|
|
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.93 E-value=1.7 Score=33.06 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=15.9
Q ss_pred EEEEecCCChhhhhhhHHHH
Q 013684 240 GLYFSARWCIPCEKFMPKLL 259 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~ 259 (438)
+..|.-++||+|.+....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45677889999998877666
|
|
| >PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=88.81 E-value=1.3 Score=33.68 Aligned_cols=56 Identities=27% Similarity=0.344 Sum_probs=41.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+.|+-|......|.++... ..+.+..|+++.+ .++.++|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~------------~~~~l~~vDI~~d-----------------------~~l~~~Y 46 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE------------FPFELEEVDIDED-----------------------PELFEKY 46 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT------------STCEEEEEETTTT-----------------------HHHHHHS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh------------cCceEEEEECCCC-----------------------HHHHHHh
Confidence 5677889999999988877765432 2578999998855 5578889
Q ss_pred CcCceeeEEEEC
Q 013684 320 DVQGIPCLVIIG 331 (438)
Q Consensus 320 ~v~~~P~~~lid 331 (438)
+. .+|.+.+-+
T Consensus 47 ~~-~IPVl~~~~ 57 (81)
T PF05768_consen 47 GY-RIPVLHIDG 57 (81)
T ss_dssp CT-STSEEEETT
T ss_pred cC-CCCEEEEcC
Confidence 95 799866554
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A. |
| >KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.66 E-value=1.2 Score=35.94 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=37.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+|.|.-+|||+|.....-|.+ +. .+..|+-+.-+.+-.++++++ .+.-
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~----------v~~~vvELD~~~~g~eiq~~l------------------~~~t 63 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LG----------VNPKVVELDEDEDGSEIQKAL------------------KKLT 63 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CC----------CCCEEEEccCCCCcHHHHHHH------------------HHhc
Confidence 456888999999994443333 32 234555555444443444433 3334
Q ss_pred CcCceeeEEEECCCCcEE
Q 013684 320 DVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~ 337 (438)
|-+.+|.+| | +|+.+
T Consensus 64 g~~tvP~vF-I--~Gk~i 78 (104)
T KOG1752|consen 64 GQRTVPNVF-I--GGKFI 78 (104)
T ss_pred CCCCCCEEE-E--CCEEE
Confidence 556888866 4 67777
|
|
| >cd00029 C1 Protein kinase C conserved region 1 (C1) | Back alignment and domain information |
|---|
Probab=88.44 E-value=0.29 Score=33.32 Aligned_cols=35 Identities=29% Similarity=0.564 Sum_probs=29.1
Q ss_pred CCcccCccCCCCCc---eeEEcCCCCCCccCccccccC
Q 013684 397 GPFICCDCDEQGSG---WAYQCLECGYEVHPKCVRAVD 431 (438)
Q Consensus 397 ~~~~c~~C~~~~~~---w~~~c~~c~~~~~~~c~~~~~ 431 (438)
.+..|..|++.-.+ ..|+|..|++-.|++|+...+
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~ 47 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVP 47 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhccCC
Confidence 45679999887664 889999999999999997554
|
Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis). |
| >KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.34 E-value=5.9 Score=38.03 Aligned_cols=92 Identities=14% Similarity=0.217 Sum_probs=60.7
Q ss_pred cccCCCEEEEEEecC----CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 232 SSLVGKTVGLYFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 232 ~~~~gk~vll~F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
.-.++=.++++|.|. .|.-|+....++.-+++.+.... + ..++-++.+-.+|-++
T Consensus 56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~---~-~sn~tklFF~~Vd~~e----------------- 114 (331)
T KOG2603|consen 56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNS---P-FSNGTKLFFCMVDYDE----------------- 114 (331)
T ss_pred CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccC---C-CCCcceEEEEEEeccc-----------------
Confidence 334454577778775 59999999999999998887540 0 0233445555555332
Q ss_pred CCchhHHHHHhcCcCceeeEEEECCC-CcEEEcccchhhhhcc
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNLINLYQ 349 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~~-G~i~~~~~~~~~~~~g 349 (438)
..++.+.++++..|+++++.|. |+.. +....+....|
T Consensus 115 ----~p~~Fq~l~ln~~P~l~~f~P~~~n~~-~s~~~d~~~~g 152 (331)
T KOG2603|consen 115 ----SPQVFQQLNLNNVPHLVLFSPAKGNKK-RSDQMDQQDLG 152 (331)
T ss_pred ----cHHHHHHhcccCCCeEEEeCCCccccc-cCccchhhhcc
Confidence 3778999999999999999654 5554 44444444443
|
|
| >PF13778 DUF4174: Domain of unknown function (DUF4174) | Back alignment and domain information |
|---|
Probab=88.23 E-value=4.9 Score=33.12 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=51.3
Q ss_pred ccccCCCEEEEEEecC--CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 013684 231 VSSLVGKTVGLYFSAR--WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 308 (438)
Q Consensus 231 l~~~~gk~vll~F~a~--wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 308 (438)
+++++++.-+|..+|+ .-+.-..+...|.+....+.++ ++.++.|.-+.... ..-+..
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR---------di~v~~i~~~~~~~-----------~~~~~~ 62 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER---------DIVVIVITGDGARS-----------PGKPLS 62 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC---------ceEEEEEeCCcccc-----------ccCcCC
Confidence 5566775544444554 2334455555555555556554 66666663332211 011222
Q ss_pred CchhHHHHHhcCcC-ceeeEEEECCCCcEEEcc
Q 013684 309 DPTIKELTKYFDVQ-GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 309 ~d~~~~l~~~~~v~-~~P~~~lid~~G~i~~~~ 340 (438)
......+.+.|++. +--+++||++||.+..+.
T Consensus 63 ~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~ 95 (118)
T PF13778_consen 63 PEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRW 95 (118)
T ss_pred HHHHHHHHHHhCCCCCceEEEEEeCCCcEEEec
Confidence 23456788889864 234889999999998874
|
|
| >KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7 | Back alignment and domain information |
|---|
Probab=88.16 E-value=0.19 Score=35.10 Aligned_cols=25 Identities=40% Similarity=1.052 Sum_probs=21.2
Q ss_pred CcccCccCCC---CCceeEEcCCCCCCc
Q 013684 398 PFICCDCDEQ---GSGWAYQCLECGYEV 422 (438)
Q Consensus 398 ~~~c~~C~~~---~~~w~~~c~~c~~~~ 422 (438)
.|+|++|+.. .++=..+|.||+|.+
T Consensus 20 iYiCgdC~~en~lk~~D~irCReCG~RI 47 (62)
T KOG3507|consen 20 IYICGDCGQENTLKRGDVIRCRECGYRI 47 (62)
T ss_pred EEEeccccccccccCCCcEehhhcchHH
Confidence 5999999864 577889999999976
|
0 [Transcription] |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=88.00 E-value=1.3 Score=46.54 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=45.0
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+..+.++.-+..|..+.||+|......++++.... .+++.-.| |.... .++.
T Consensus 112 ~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~----p~i~~~~i--d~~~~----------------------~~~~ 163 (515)
T TIGR03140 112 IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN----PNISHTMI--DGALF----------------------QDEV 163 (515)
T ss_pred HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC----CCceEEEE--EchhC----------------------HHHH
Confidence 34445677799999999999998777776666553 23443333 32211 6778
Q ss_pred hhcCcCccceEEE
Q 013684 146 RKFDIEGIPCLVV 158 (438)
Q Consensus 146 ~~~~v~~~P~~~l 158 (438)
+.|++.++|++++
T Consensus 164 ~~~~v~~VP~~~i 176 (515)
T TIGR03140 164 EALGIQGVPAVFL 176 (515)
T ss_pred HhcCCcccCEEEE
Confidence 8999999999876
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.08 E-value=2.7 Score=31.30 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=44.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcC
Q 013684 241 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 320 (438)
Q Consensus 241 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 320 (438)
..|++..||.|......|.++. +..=+|.+-.+-..+++|+.-.. +.| .=+-.+.+|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~----------------v~yd~VeIt~Sm~NlKrFl~lRD--s~~-----~Fd~vk~~g 61 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN----------------VDYDFVEITESMANLKRFLHLRD--SRP-----EFDEVKSNG 61 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC----------------CCceeeehhhhhhhHHHHHhhhc--cch-----hHHhhhhcC
Confidence 5689999999988777666542 33334444556667777775211 000 112245667
Q ss_pred cCceeeEEEECCCCcEEE
Q 013684 321 VQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 321 v~~~P~~~lid~~G~i~~ 338 (438)
--|+|.+.+ .+|+++-
T Consensus 62 yiGIPall~--~d~~vVl 77 (85)
T COG4545 62 YIGIPALLT--DDGKVVL 77 (85)
T ss_pred cccceEEEe--CCCcEEE
Confidence 789998654 4777764
|
|
| >PRK10824 glutaredoxin-4; Provisional | Back alignment and domain information |
|---|
Probab=86.02 E-value=1.4 Score=36.10 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=16.8
Q ss_pred CEEEEEEec----CCChhhhhhhHHHHHH
Q 013684 237 KTVGLYFSA----RWCIPCEKFMPKLLSI 261 (438)
Q Consensus 237 k~vll~F~a----~wC~~C~~~~p~l~~l 261 (438)
+.|+|+--. +|||+|.+....|.++
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 345554333 5999999987766654
|
|
| >COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.76 E-value=1.5 Score=46.39 Aligned_cols=82 Identities=20% Similarity=0.147 Sum_probs=50.7
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHH
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 143 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 143 (438)
..-++|+++|....+||--|..|..+= .++++-+++. +|-|.+|+.+. |..|.-. ..
T Consensus 39 A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDREER--------------PDvD~~Y-m~ 98 (667)
T COG1331 39 AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDREER--------------PDVDSLY-MN 98 (667)
T ss_pred HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeEChhhc--------------cCHHHHH-HH
Confidence 344789999999999999999886432 2244444332 45555564432 1112222 22
Q ss_pred Hhhh-cCcCccceEEEecCCCCCCCcccc
Q 013684 144 LNRK-FDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 144 l~~~-~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+++. -|--+.|-++++-| ||+..+.
T Consensus 99 ~~q~~tG~GGWPLtVfLTP---d~kPFfa 124 (667)
T COG1331 99 ASQAITGQGGWPLTVFLTP---DGKPFFA 124 (667)
T ss_pred HHHHhccCCCCceeEEECC---CCceeee
Confidence 2332 24568999999999 9988754
|
|
| >PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=85.30 E-value=1.5 Score=33.35 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=41.8
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|..+.|+-|......|.++..+ ..+++..|+++.+ .++.++|+. .+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~-----~~~~l~~vDI~~d------------------------~~l~~~Y~~-~IP 51 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE-----FPFELEEVDIDED------------------------PELFEKYGY-RIP 51 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT-----STCEEEEEETTTT------------------------HHHHHHSCT-STS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh-----cCceEEEEECCCC------------------------HHHHHHhcC-CCC
Confidence 6789999999999988877765444 2488888888855 557778886 599
Q ss_pred eEEEec
Q 013684 155 CLVVLQ 160 (438)
Q Consensus 155 ~~~lvd 160 (438)
.+.+-+
T Consensus 52 Vl~~~~ 57 (81)
T PF05768_consen 52 VLHIDG 57 (81)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 877755
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A. |
| >PRK10954 periplasmic protein disulfide isomerase I; Provisional | Back alignment and domain information |
|---|
Probab=84.03 E-value=0.91 Score=41.44 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=27.0
Q ss_pred CCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHh
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQ 267 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~ 267 (438)
.|++.++.|+...||+|..+.+.+ ..+.+.+.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 478889999999999999999866 566666653
|
|
| >PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines | Back alignment and domain information |
|---|
Probab=83.83 E-value=0.64 Score=27.24 Aligned_cols=23 Identities=30% Similarity=0.765 Sum_probs=20.9
Q ss_pred ccCccCCCCCceeEEcCCCCCCc
Q 013684 400 ICCDCDEQGSGWAYQCLECGYEV 422 (438)
Q Consensus 400 ~c~~C~~~~~~w~~~c~~c~~~~ 422 (438)
.|+.|..+-+.=.-.|..|||++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 58999999999999999999986
|
Several members are annotated as putative helicases. |
| >KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.12 E-value=2.4 Score=37.79 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=54.2
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+..-|++.||-+.-..|+-+-..|..+++.+-+ ..+|-|++... .-+...++
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~------------------------PFlv~kL~ 134 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKA------------------------PFLVTKLN 134 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccC------------------------ceeeeeee
Confidence 457899999999999999999999999988733 45666655432 45677899
Q ss_pred cCccceEEEecCCCCCCCccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~ 170 (438)
|..+|++.++. +|..+.
T Consensus 135 IkVLP~v~l~k----~g~~~D 151 (211)
T KOG1672|consen 135 IKVLPTVALFK----NGKTVD 151 (211)
T ss_pred eeEeeeEEEEE----cCEEEE
Confidence 99999999998 675553
|
|
| >PRK10954 periplasmic protein disulfide isomerase I; Provisional | Back alignment and domain information |
|---|
Probab=82.21 E-value=1.3 Score=40.42 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=30.9
Q ss_pred cCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEE
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFV 112 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~v 112 (438)
..|++.+++|+.-.||+|..+.+.+ ..+.+.+.+. +.++.+
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~---v~~~~~ 78 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG---TKMTKY 78 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC---CeEEEe
Confidence 3578899999999999999999866 6666666433 455544
|
|
| >PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=81.44 E-value=2.8 Score=42.64 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=39.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+|||+|.+....|.+. ++.+-.|++|.+.. ..++.++.+ ...+.+..
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~----------------gi~~~~idi~~~~~-~~~~~~~~~----------~~~~~~~~ 56 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN----------------DIPFTQISLDDDVK-RAEFYAEVN----------KNILLVEE 56 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC----------------CCCeEEEECCCChh-HHHHHHHHh----------hccccccC
Confidence 5678899999999877665542 34555566664432 222222111 01134446
Q ss_pred CcCceeeEEEECCCCcEE
Q 013684 320 DVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~ 337 (438)
|...+|++++ +|+.+
T Consensus 57 g~~tvP~ifi---~~~~i 71 (410)
T PRK12759 57 HIRTVPQIFV---GDVHI 71 (410)
T ss_pred CCCccCeEEE---CCEEE
Confidence 8889999754 45544
|
|
| >KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.63 E-value=4.3 Score=34.91 Aligned_cols=63 Identities=25% Similarity=0.430 Sum_probs=42.3
Q ss_pred EEecccc-CCCEEEEEEe--ccCCcc-chhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcC
Q 013684 63 EVKVSDL-EGKVTALYFS--ANWYPP-CGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM 128 (438)
Q Consensus 63 ~v~l~~~-~gk~vll~F~--a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~ 128 (438)
+++++++ +||-++| |. +..-|. |+...|-+.+-+++|+.+|. -+|+-|+++ ++...+.+.+.+
T Consensus 34 tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksKGV-d~iicvSVn-DpFv~~aW~k~~ 100 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSKGV-DEIICVSVN-DPFVMKAWAKSL 100 (171)
T ss_pred eEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhcCC-cEEEEEecC-cHHHHHHHHhhc
Confidence 6888886 7765444 43 334466 67789999999999999883 356667777 444444444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 438 | ||||
| 1okd_A | 154 | Nmr-Structure Of Tryparedoxin 1 Length = 154 | 5e-21 | ||
| 1ezk_A | 153 | Crystal Structure Of Recombinant Tryparedoxin I Len | 6e-21 | ||
| 1o73_A | 144 | Tryparedoxin From Trypanosoma Brucei Length = 144 | 1e-20 | ||
| 1qk8_A | 146 | Tryparedoxin-I From Crithidia Fasciculata Length = | 4e-20 | ||
| 1ewx_A | 146 | Crystal Structure Of Native Tryparedoxin I From Cri | 4e-20 | ||
| 1o8x_A | 146 | Mutant Tryparedoxin-I Cys43ala Length = 146 | 4e-19 | ||
| 3s9f_A | 165 | The Structure Of Tryparedoxin I From Leishmania Maj | 1e-18 | ||
| 1oc9_A | 152 | Tryparedoxin Ii From C.Fasciculata Solved By Mr Len | 1e-18 | ||
| 1o6j_A | 150 | Tryparedoxin Ii From C.Fasciculata Solved By Sulphu | 2e-18 | ||
| 1o81_A | 152 | Tryparedoxin Ii From C.fasciculata Solved By Sulphu | 2e-18 | ||
| 1fg4_A | 149 | Structure Of Tryparedoxin Ii Length = 149 | 2e-18 | ||
| 1i5g_A | 144 | Tryparedoxin Ii Complexed With Glutathionylspermidi | 1e-17 | ||
| 2lus_A | 143 | Nmr Structure Of Carcinoscorpius Rotundicauda Thior | 1e-13 | ||
| 2lus_A | 143 | Nmr Structure Of Carcinoscorpius Rotundicauda Thior | 4e-13 | ||
| 1v5n_A | 89 | Solution Structure Of Dc1 Domain Of Pdi-Like Hypoth | 1e-07 | ||
| 1st9_A | 143 | Crystal Structure Of A Soluble Domain Of Resa In Th | 3e-05 | ||
| 2h1b_A | 143 | Resa E80q Length = 143 | 3e-05 | ||
| 2h19_A | 143 | Crystal Structure Of Resa Cys77ala Variant Length = | 3e-04 | ||
| 2h1a_A | 143 | Resa C74a Variant Length = 143 | 3e-04 | ||
| 3c73_A | 140 | Structure Of Cehc Variant Resa Length = 140 | 3e-04 | ||
| 3c71_A | 143 | Struture Of A Resa Variant With A Dsba-Like Active | 3e-04 | ||
| 2ls5_A | 159 | Solution Structure Of A Putative Protein Disulfide | 4e-04 |
| >pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I Length = 153 | Back alignment and structure |
|
| >pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei Length = 144 | Back alignment and structure |
|
| >pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala Length = 146 | Back alignment and structure |
|
| >pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major Length = 165 | Back alignment and structure |
|
| >pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr Length = 152 | Back alignment and structure |
|
| >pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur Phasing Length = 150 | Back alignment and structure |
|
| >pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur Phasing Length = 152 | Back alignment and structure |
|
| >pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii Length = 149 | Back alignment and structure |
|
| >pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine Length = 144 | Back alignment and structure |
|
| >pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin Related Protein 16 And Its Role In Regulating Transcription Factor Nf-Kb Activity Length = 143 | Back alignment and structure |
|
| >pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin Related Protein 16 And Its Role In Regulating Transcription Factor Nf-Kb Activity Length = 143 | Back alignment and structure |
|
| >pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana Length = 89 | Back alignment and structure |
|
| >pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The Oxidised Form Length = 143 | Back alignment and structure |
|
| >pdb|2H1B|A Chain A, Resa E80q Length = 143 | Back alignment and structure |
|
| >pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant Length = 143 | Back alignment and structure |
|
| >pdb|2H1A|A Chain A, Resa C74a Variant Length = 143 | Back alignment and structure |
|
| >pdb|3C73|A Chain A, Structure Of Cehc Variant Resa Length = 140 | Back alignment and structure |
|
| >pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site Motif (Cphc) Length = 143 | Back alignment and structure |
|
| >pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide Isomerase From Bacteroides Thetaiotaomicron Length = 159 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 6e-40
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 11/136 (8%)
Query: 226 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285
D +V V SL GK V YFSA WC P F P+L+ Y K ++ ++FEVVF +
Sbjct: 18 DGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES--------KNFEVVFCT 69
Query: 286 TDRDQTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRN 343
D ++ F YF MPWLA+PF +++L+K+F+V+ IP L+ + + G VT + R
Sbjct: 70 WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
Query: 344 -LINLYQENAYPFTEA 358
L+ + +P+ +A
Sbjct: 130 TLVKDPEGEQFPWKDA 145
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 3e-34
Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
EV+V L GK+ YFSA+W PP FT L++ Y++ + +FEVVF + DE+ +
Sbjct: 18 DGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESK-NFEVVFCTWDEEEDG 76
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDD---ATLHDGVELI 177
F Y A MPWLAVP++ E + L++ F++E IP L+ + D D T L+
Sbjct: 77 FAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGV----DADSGDVVTTRARATLV 132
Query: 178 YKYGIRAFPFTK 189
FP+
Sbjct: 133 KDPEGEQFPWKD 144
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 8e-40
Identities = 54/134 (40%), Positives = 72/134 (53%), Gaps = 11/134 (8%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
+V + SLVGKTV LYFSA WC PC F P L Y+K ++FEVV +S
Sbjct: 19 GEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA--------KNFEVVLISW 70
Query: 287 DRDQTSFESYFGTMPWLALPFG-DPTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRN- 343
D +++ F Y+G MPWLALPF T+ EL K F V+ IP L+ I + G + Q R
Sbjct: 71 DENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTR 130
Query: 344 LINLYQENAYPFTE 357
+I +P+
Sbjct: 131 VIEDPDGANFPWPN 144
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 8e-33
Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
EV + L GK LYFSA+W PPC FT VL + YE+ +FEVV +S DE+ +
Sbjct: 18 SGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAK-NFEVVLISWDENESD 76
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDD---ATLHDGVELI 177
F++Y MPWLA+P+ T L + F +E IP L+ + + D +I
Sbjct: 77 FHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITI----NADTGAIIGTQARTRVI 132
Query: 178 YKYGIRAFPFT 188
FP+
Sbjct: 133 EDPDGANFPWP 143
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 9e-40
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
+ + SL GKTV YFSA WC P F P+L+ Y+ + ++FEV+ +S
Sbjct: 19 ADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK--------KNFEVMLISW 70
Query: 287 DRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNL 344
D F+ Y+ MPWLALPF D LT FDV+ IP LV + + G +T Q R +
Sbjct: 71 DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
Query: 345 I-NLYQENAYPFTE 357
+ + +P+
Sbjct: 131 VVKDPEAKDFPWPN 144
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 5e-34
Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 53 RMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 112
K ++ + L GK YFSA+W PP FT L+D Y+ +FEV+ +
Sbjct: 10 STNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKK-NFEVMLI 68
Query: 113 SSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDD---AT 169
S DE F +Y A MPWLA+P+ D + + L FD++ IP LV + + D T
Sbjct: 69 SWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGV----EADSGNIIT 124
Query: 170 LHDGVELIYKYGIRAFPFT 188
++ + FP+
Sbjct: 125 TQARTMVVKDPEAKDFPWP 143
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 8e-39
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 11/134 (8%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
+ + SL GKTV YFSA WC PC F P+L+ Y+K + ++FE++ S
Sbjct: 39 DTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDS--------KNFEIILASW 90
Query: 287 DRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNL 344
D ++ F +Y+ MPWL++PF + I LTK + V+ IP L+ + + G TVT + R+
Sbjct: 91 DEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHA 150
Query: 345 I-NLYQENAYPFTE 357
+ +P+ +
Sbjct: 151 LTQDPMGEQFPWRD 164
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 3e-33
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
+ + L GK YFSA+W PPC FT LV+ YE+ ++ +FE++ S DE+ +
Sbjct: 38 ADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSK-NFEIILASWDEEEDD 96
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDD---ATLHDGVELI 177
FN Y A MPWL++P+++ +AL +K+ +E IP L+ L + D T L
Sbjct: 97 FNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGL----NADTGDTVTTRARHALT 152
Query: 178 YKYGIRAFPFTKE 190
FP+ E
Sbjct: 153 QDPMGEQFPWRDE 165
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 2e-38
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 227 EKVPVSSLV--GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284
+V + + +G YFSA WC PC F P L +Y ++ D FE++FV
Sbjct: 15 CEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELV-------DDSAPFEIIFV 67
Query: 285 STDRDQTSFESYFG--TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 342
S+DR + Y WLA+P+ +T + + GIP LVI+ +G ++ GR
Sbjct: 68 SSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGR 127
Query: 343 NLINLYQENAY 353
+ A+
Sbjct: 128 GEVQSLGPRAF 138
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 4e-29
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 61 GEEVKVSDL--EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 118
EV ++ + + YFSA+W PPC FT +L D+Y EL ++ + FE++FVSSD
Sbjct: 14 RCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSE 73
Query: 119 NAFNNYRAC--MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH-DGVE 175
+ Y WLA+PY + K+ I GIP LV++ KD + +G
Sbjct: 74 DDMFQYMMESHGDWLAIPYRS-GPASNVTAKYGITGIPALVIV----KKDGTLISMNGRG 128
Query: 176 LIYKYGIRAF 185
+ G RAF
Sbjct: 129 EVQSLGPRAF 138
|
| >1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 2e-23
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 351 NAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHR-HELNLVSEGTGGGPFICCDCDEQGS 409
+ TE +L+ +E + +E AK+ P+ H+ H HEL L + C C+E+G+
Sbjct: 3 SGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTR----VQVYTCDKCEEEGT 58
Query: 410 GWAYQCLECGYEVHPKCVRAVDRGS 434
W+Y C EC +++H KC D
Sbjct: 59 IWSYHCDECDFDLHAKCALNEDTKE 83
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-17
Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVF 283
+ +S L + L+F C C KF + + ++ V+
Sbjct: 18 DNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG---------TLRVLA 68
Query: 284 VSTDRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPEGKTVTKQGR 342
+ D ++ + + MP + + + +D++ P + ++ + + K
Sbjct: 69 IYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKDTS 128
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 1e-15
Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 22/145 (15%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVD---VYEELRNNGSDFEVVFVSSDED 117
G+ ++S L+ + T L+F C F + + E + N V+ + DE+
Sbjct: 17 GDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAIYPDEN 74
Query: 118 LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELI 177
+ MP + + + +DI P + +L D
Sbjct: 75 REEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLL----DG------RKR--- 121
Query: 178 YKYGIRAFPFTKEKLEELQKEEKEK 202
+ + E+L + + K
Sbjct: 122 ----VILKDTSMEQLIDYLATQAGK 142
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 3e-17
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
++ L GK V + F+ L +Y K FE+ +S
Sbjct: 26 NTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ---------GFEIYQISL 76
Query: 287 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339
D D+ +++ +PW+ + + ++V +P + ++ + +
Sbjct: 77 DGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSAR 129
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 3e-13
Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 18/145 (12%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G ++DL+GKV + F+ L ++Y + + G FE+ +S D D +
Sbjct: 25 GNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHF 82
Query: 121 FNNYRACMPWLAVPYSDLE-TKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYK 179
+ +PW+ V D + +++ +P + ++ ++ + +
Sbjct: 83 WKTSADNLPWVCV--RDANGAYSSYISLYNVTNLPSVFLV----NR------NNE--LSA 128
Query: 180 YGIRAFPFTKEKLEELQKEEKEKHE 204
G E +++L + H
Sbjct: 129 RGEN-IKDLDEAIKKLLEGHHHHHH 152
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 6e-17
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
V ++ GK V + F C C K P LL Y K F + VST
Sbjct: 20 NSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK---------GFTIYGVST 70
Query: 287 DRDQTSFESYFG--TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 342
DR + ++ W + +K++ + + + G P ++++ PEGK V K+ R
Sbjct: 71 DRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELR 128
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-12
Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 18/148 (12%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G V ++D +GK + F C T L+ Y ++ G F + VS+D
Sbjct: 19 GNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGVSTDRREED 76
Query: 121 FNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIY 178
+ W V + K + + I G P ++++ D +G I
Sbjct: 77 WKKAIEEDKSYWNQVL-LQKDDVKDVLESYCIVGFPHIILV----DP------EGK--IV 123
Query: 179 KYGIRAFPFTKEKLEELQKEEKEKHERQ 206
+R +E+ KE H
Sbjct: 124 AKELRG-DDLYNTVEKFVNGAKEGHHHH 150
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 1e-16
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 9/115 (7%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
K + + L+ + C C + + L + I K +V+ +
Sbjct: 22 VKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASP-VINGFTAAKK-----LKVLSIYP 75
Query: 287 DRDQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339
D + ++ + W + IK Y D++ IP L ++ + K
Sbjct: 76 DEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY-DLRAIPTLYLLDKNKTVLLK 129
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-13
Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 22/141 (15%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVD---VYEELRNNGSDFEVVFVSSDED 117
G + + + T L+ + C L + +V+ + DE+
Sbjct: 21 GVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKK--LKVLSIYPDEE 78
Query: 118 LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELI 177
L+ + +R D E +D+ IP L +L DK +
Sbjct: 79 LDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLL----DK------NKT--- 125
Query: 178 YKYGIRAFPFTKEKLEELQKE 198
+ T +K+E+ E
Sbjct: 126 ----VLLKDATLQKVEQYLAE 142
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 3e-16
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 23/148 (15%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
+ V ++ L GK + + A WC PC +P L + +K D V +S
Sbjct: 21 KTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGK---------DIHFVSLSC 71
Query: 287 DRDQTSFESYFGT--MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNL 344
D+++ ++E+ + + L G + + + GIP +++ +GK ++
Sbjct: 72 DKNKKAWENMVTKDQLKGIQLHMGTD--RTFMDAYLINGIPRFILLDRDGKIISANMT-- 127
Query: 345 INLYQENAYPFTEAKLEFLEKQMEEEAK 372
P E + + E
Sbjct: 128 --------RPSDPKTAEKFNELLGLEGH 147
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 8e-12
Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 17/148 (11%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G+ V ++DL+GK + A W PC L ++ E+ V +S D++ A
Sbjct: 20 GKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCDKNKKA 77
Query: 121 FNNYRA--CMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIY 178
+ N + + + + T + + I GIP ++L D+ DG +
Sbjct: 78 WENMVTKDQLKGIQLH---MGTDRTFMDAYLINGIPRFILL----DR------DGKIISA 124
Query: 179 KYGIRAFPFTKEKLEELQKEEKEKHERQ 206
+ P T EK EL E H
Sbjct: 125 NMTRPSDPKTAEKFNELLGLEGHHHHHH 152
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 4e-16
Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 23/147 (15%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
+ + K L+F C C++ PKL + K + + +V +
Sbjct: 22 TYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRA---------KGIQVYAANI 72
Query: 287 DRDQTSFESY---FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRN 343
+R + + WL + + +D+ P L ++ + K+
Sbjct: 73 ERKDEEWLKFIRSKKIGGWLNV-RDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIG- 130
Query: 344 LINLYQENAYPFTEAKLEFLEKQMEEE 370
Y + L EK ++ +
Sbjct: 131 ---------YENLDDFLVQYEKSLKTK 148
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 2e-13
Identities = 32/145 (22%), Positives = 51/145 (35%), Gaps = 20/145 (13%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G + D++ K T L+F + C T L D + + R G +V + +
Sbjct: 21 GTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERKDEE 78
Query: 121 FNNY---RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELI 177
+ + + WL V D + +DI P L VL DK + V I
Sbjct: 79 WLKFIRSKKIGGWLNV--RDSKNHTDFKITYDIYATPVLYVL----DK------NKV--I 124
Query: 178 YKYGIRAFPFTKEKLEELQKEEKEK 202
I + L + +K K K
Sbjct: 125 IAKRIGYENL-DDFLVQYEKSLKTK 148
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.7 bits (193), Expect = 1e-15
Identities = 66/412 (16%), Positives = 130/412 (31%), Gaps = 115/412 (27%)
Query: 14 HQDFQASWP----LKIVTIFSINMALRFLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDL 69
H DF+ I+++F + + VQ + + + S +EI + D
Sbjct: 6 HMDFETGEHQYQYKDILSVF-----EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD- 59
Query: 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMP 129
V+ L L + + FV +E L NY
Sbjct: 60 --AVSGTLR--------------LFWT---LLSKQEEMVQKFV--EEVLRI--NY----K 92
Query: 130 WLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGI-RAFPFT 188
+L P + + ++ + IE D+ L++ ++ KY + R P+
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIE----------QRDR----LYNDNQVFAKYNVSRLQPYL 138
Query: 189 --KEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTV------- 239
++ L EL+ + + G +LG GKT
Sbjct: 139 KLRQALLELRPAKN-----------VLID--G-VLG------------SGKTWVALDVCL 172
Query: 240 ------GLYFSARW-----CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288
+ F W C E + L + +I N + D + ++ S
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-- 230
Query: 289 DQTSFESYFGTMPW----LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNL 344
Q + P+ L L + + F++ C +++ K VT
Sbjct: 231 -QAELRRLLKSKPYENCLLVL--LNVQNAKAWNAFNLS---CKILLTTRFKQVTDFLSAA 284
Query: 345 INLY---QENAYPFTEAK-LEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSE 392
+ ++ T + L K ++ ++LPR E + L++++E
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAE 335
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 6e-05
Identities = 54/346 (15%), Positives = 104/346 (30%), Gaps = 68/346 (19%)
Query: 4 LSLSIRRS---QPHQDFQASWPLKIVTIFSINMALRFLIMSLSQWYVQQLRRRMTSTKEI 60
++L + S Q DF+ W + + + N L M Y Q+ TS +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFW----LNLKNCNSPETVLEMLQKLLY--QIDPNWTSRSDH 219
Query: 61 GEEVK--VSDLEGKVTALYFSANWYPPCGNFTGVLV--DVYEELRNNGSDFE--VVFVSS 114
+K + ++ ++ L + Y C +LV +V N + ++ +
Sbjct: 220 SSNIKLRIHSIQAELRRL-LKSKPYENC-----LLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 115 D----EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL 170
+ L+A + ++ + E K L + D L P +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQDL----PREVLTTNPR 328
Query: 171 HDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYL--LG-HPPDE 227
+ +I + IR T + + + ++ +L L R L PP
Sbjct: 329 R--LSIIAES-IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 228 KVPVSSLVGKTVGLYFSARWCIP----CEKFMPKLLSIYQKIKQNLVEKGDA-----LED 278
+P + L W + KL K +LVEK +
Sbjct: 386 HIPT-----ILLSLI----WFDVIKSDVMVVVNKL------HKYSLVEKQPKESTISIPS 430
Query: 279 FEVVFVSTDRDQTSF-----ESYFGTMPWLALPFGDPTIKELTKYF 319
+ ++ + + Y D L +YF
Sbjct: 431 IYLELKVKLENEYALHRSIVDHY---NIPKTFDSDDLIPPYLDQYF 473
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 3e-15
Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 21/134 (15%)
Query: 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 295
+ + L F A WC P + +L + ++ K+N ++F ++ +S D D+ ++E+
Sbjct: 33 NRYLLLNFWASWCDPQPEANAELKRLNKEYKKN--------KNFAMLGISLDIDREAWET 84
Query: 296 YFGT--MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAY 353
+ W + E K + + +P +++ P GK + + +
Sbjct: 85 AIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDIQ----------G 134
Query: 354 PFTEAKL-EFLEKQ 366
KL E L+ +
Sbjct: 135 EALTGKLKELLKTE 148
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-08
Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 21/144 (14%)
Query: 61 GEEVKVS--DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 118
GE++ S + L F A+W P L + +E + N +F ++ +S D D
Sbjct: 21 GEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKN-KNFAMLGISLDIDR 79
Query: 119 NAFNNY--RACMPWLAVPYSDLE-TKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 175
A+ + + W V D +++ I +P ++L G
Sbjct: 80 EAWETAIKKDTLSWDQV--CDFTGLSSETAKQYAILTLPTNILL----SP------TGK- 126
Query: 176 LIYKYGIRAFPFTKEKLEELQKEE 199
I I+ KL+EL K E
Sbjct: 127 -ILARDIQG-EALTGKLKELLKTE 148
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-14
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 14/117 (11%)
Query: 225 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284
V +S G V L F A WC PC + P + + K K + F+VV V
Sbjct: 17 KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKA---------KGFQVVAV 67
Query: 285 STDRDQTSFESYFGT--MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339
+ D + + DP + + + V+G+P +I GK + +
Sbjct: 68 NLDAKTGDAMKFLAQVPAEFTVAF--DPK-GQTPRLYGVKGMPTSFLIDRNGKVLLQ 121
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-09
Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 20/148 (13%)
Query: 63 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 122
VK+SD G V L F A+W PC + + + + G F+VV V+ D
Sbjct: 20 VVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAKTGDAM 77
Query: 123 NY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
+ + + + K R + ++G+P ++ D+ +G L+
Sbjct: 78 KFLAQVPAEFTVA----FDPKGQTPRLYGVKGMPTSFLI----DR------NGKVLLQHV 123
Query: 181 GIRA--FPFTKEKLEELQKEEKEKHERQ 206
G R ++++ + H
Sbjct: 124 GFRPADKEALEQQILAALGGNEGHHHHH 151
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 3e-14
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 12/118 (10%)
Query: 225 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284
D K + +G+ L F A + +L + K + + +
Sbjct: 21 NDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD---------KIAMCSI 71
Query: 285 STDRDQTSFESY---FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339
S D ++ F G EL K +D++ +I EG +
Sbjct: 72 SMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAA 129
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-08
Identities = 24/143 (16%), Positives = 45/143 (31%), Gaps = 21/143 (14%)
Query: 58 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117
+ + G+ T L F A + L + + + + +S DE
Sbjct: 19 LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSISMDEK 76
Query: 118 LNAFNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 175
+ F + + L + L +K+D+ ++ + +GV
Sbjct: 77 ESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLI----ND------EGV- 125
Query: 176 LIYKYGIRAFPFTKEKLEELQKE 198
I A T EKL E+ K
Sbjct: 126 ------IIAANVTPEKLTEILKA 142
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 3e-14
Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 28/158 (17%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
+++ +S L GK V L F WC PC+K P + + Y+ K + E+V V+
Sbjct: 17 KRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS---------QGVEIVAVNV 67
Query: 287 DRDQTSFESYFGT--MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ-GRN 343
+ + ++ + + + + D +++ +DV +P +I PEGK V G
Sbjct: 68 GESKIAVHNFMKSYGVNFPVVL--DTD-RQVLDAYDVSPLPTTFLINPEGKVVKVVTG-- 122
Query: 344 LINLYQENAYPFTEAKLE-FLEKQMEEEAKNLPRSEFH 380
TE+ + ++ E L H
Sbjct: 123 ----------TMTESMIHDYMNLIKPGETSGLEHHHHH 150
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-10
Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 18/149 (12%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G+ +++SDL+GK L F W PC + + Y+ ++ G E+V V+ E A
Sbjct: 16 GKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIA 73
Query: 121 FNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIY 178
+N+ + + V L+T + + +D+ +P ++ + +G +
Sbjct: 74 VHNFMKSYGVNFPVV----LDTDRQVLDAYDVSPLPTTFLI----NP------EGKVVKV 119
Query: 179 KYGIRAFPFTKEKLEELQKEEKEKHERQT 207
G + + ++ E E
Sbjct: 120 VTGTMTESMIHDYMNLIKPGETSGLEHHH 148
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 9e-14
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 227 EKVPVSSLV--GKTVGLYFSARWCIPC--EKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 282
EK+ SS K++ + F A W ++ +L IY+K K+N + ++
Sbjct: 22 EKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKN--------KYIGML 73
Query: 283 FVSTDRDQTSFESYF--GTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340
+S D D+ ++ T+ W + E+ K + + IP +++ +GK + K
Sbjct: 74 GISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKN 133
Query: 341 GR 342
R
Sbjct: 134 LR 135
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-09
Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 21/144 (14%)
Query: 61 GEEVKVSD--LEGKVTALYFSANWYPPCGNFTGV--LVDVYEELRNNGSDFEVVFVSSDE 116
GE++ S + K + F A+W L ++Y++ + N ++ +S D
Sbjct: 21 GEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK-YIGMLGISLDV 79
Query: 117 DLNAFNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV 174
D + + R + W V + +++ I IP ++L DG
Sbjct: 80 DKQQWKDAIKRDTLDWEQV-CDFGGLNSEVAKQYSIYKIPANILL----SS------DGK 128
Query: 175 ELIYKYGIRAFPFTKEKLEELQKE 198
I +R K+K+E + +E
Sbjct: 129 --ILAKNLRG-EELKKKIENIVEE 149
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 1e-12
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
+ +S GK V L F A WC C +P I ++ + + VS
Sbjct: 13 KTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD---------DYVVLTVVSP 63
Query: 287 DRD----QTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGK 335
+ F++++ + + LP DP+ +L + + V+ P I EGK
Sbjct: 64 GHKGEQSEADFKNWYKGLDYKNLPVLVDPS-GKLLETYGVRSYPTQAFIDKEGK 116
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 4e-08
Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 19/140 (13%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--- 117
G+ ++SD +GK L F A+W C ++ +E ++ + VS
Sbjct: 12 GKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDY--VVLTVVSPGHKGEQ 69
Query: 118 -LNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 175
F N+ + + +P D L + + P + DK +G
Sbjct: 70 SEADFKNWYKGLDYKNLPVLVD--PSGKLLETYGVRSYPTQAFI----DK------EGKL 117
Query: 176 LIYKYGIRAFPFTKEKLEEL 195
+ G + L+EL
Sbjct: 118 VKTHPGFMEKDAILQTLKEL 137
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 1e-12
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
E ++ GK V + F A WC C MP + + + + D V+ V+
Sbjct: 32 ENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPK---------GDLVVLAVNV 82
Query: 287 DRDQTSF-ESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340
++ + +L+ D T ++ + + +P I+ +G +
Sbjct: 83 EKRFPEKYRRAPVSFNFLS----DAT-GQVQQRYGANRLPDTFIVDRKGIIRQRV 132
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 5e-08
Identities = 20/146 (13%), Positives = 47/146 (32%), Gaps = 21/146 (14%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
GE ++ GK+ + F A+W P C + + + + V+ V+ ++
Sbjct: 31 GENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVEKRFPE 88
Query: 121 F-NNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYK 179
+L + + +++ +P ++ D+ G+
Sbjct: 89 KYRRAPVSFNFL------SDATGQVQQRYGANRLPDTFIV----DR------KGIIRQRV 132
Query: 180 YGIRAF--PFTKEKLEELQKEEKEKH 203
G + P L+ L+ H
Sbjct: 133 TGGIEWDAPKVVSYLKSLEGHHHHHH 158
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 3e-12
Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 28/164 (17%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
+ +SL GK + F A WC PC +P ++ + + F V ++
Sbjct: 25 KPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWAS---------RGFTFVGIAV 75
Query: 287 DRDQT---SFESYFG-TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 342
+ ++ G P + + GIP +I G
Sbjct: 76 NEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGV--- 132
Query: 343 NLINLYQENAYPFTEAKLE-FLEKQMEEEAKNLPRSEFHIGHRH 385
P ++A + ++ + +A E H H H
Sbjct: 133 --------IVGPRSKADFDRIVKMALGAKA---ATKEGHHHHHH 165
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 21/142 (14%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G+ + L+GK + F A W PPC + +V V + + G F V ++ +E L
Sbjct: 24 GKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVNEQLPN 81
Query: 121 FNNY--RACMPWLAVPYSDLETKKALN--RKFDIEGIPCLVVLQPYDDKDDATLHDGVEL 176
NY + + V + E +A N I GIP V+ D G
Sbjct: 82 VKNYMKTQGIIYP-VMMATPELIRAFNGYIDGGITGIPTSFVI----DA------SGNVS 130
Query: 177 IYKYGIRAFPFTKEKLEELQKE 198
G P +K + + K
Sbjct: 131 GVIVG----PRSKADFDRIVKM 148
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-12
Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 32/163 (19%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
+ V + L GK + F C C MPK++ K ++F+V+ V+
Sbjct: 19 KTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKN---------KNFQVLAVAQ 69
Query: 287 DRDQTS----FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 342
D + +G +P+ + D K + + F Q P V+IG +G+ +
Sbjct: 70 PIDPIESVRQYVKDYG-LPFTVMY--DAD-KAVGQAFGTQVYPTSVLIGKKGEILKTYVG 125
Query: 343 NLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRH 385
E L ++++ +N +E H H H
Sbjct: 126 --------------EPDFGKLYQEIDTAWRN-SDAEGHHHHHH 153
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 4e-09
Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 23/145 (15%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--- 117
G+ V +DL+GKVT + F P C + ++ + +N F+V+ V+ D
Sbjct: 18 GKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPIDPIE 75
Query: 118 --LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 175
+Y +P+ + + KA+ + F + P V++ K G
Sbjct: 76 SVRQYVKDYG--LPFTVM----YDADKAVGQAFGTQVYPTSVLI----GK------KGEI 119
Query: 176 LIYKYGIRAFPFTKEKLEELQKEEK 200
L G F ++++ +
Sbjct: 120 LKTYVGEPDFGKLYQEIDTAWRNSD 144
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 7e-12
Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 42/161 (26%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
E + ++++ G V L+F A WC C L + +K + + V+ +
Sbjct: 28 EVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-----------EISVIAIDF 76
Query: 287 DRDQT------------------SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLV 328
+ F + + L + F+V+ I +V
Sbjct: 77 WTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDD-GSLVEKFNVRSIDYIV 135
Query: 329 IIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEE 369
I+ + + +LE + K ++
Sbjct: 136 IMDKSSNVLYAGTT------------PSLGELESVIKSVQG 164
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 9e-08
Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 20/128 (15%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
GE + ++++ G V L+F A W P C +L + E+ R + V+ +
Sbjct: 27 GEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR----EISVIAIDFWTA--- 79
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
+ Y +T + + G P +++ D L+ K+
Sbjct: 80 --EALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMV----MDDG-------SLVEKF 126
Query: 181 GIRAFPFT 188
+R+ +
Sbjct: 127 NVRSIDYI 134
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 8e-12
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 20/122 (16%)
Query: 226 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285
+ +S GKT+ + A WC+PC K MP L + K+ +FEVV ++
Sbjct: 50 GKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLS---------GPNFEVVAIN 100
Query: 286 TDRDQTS-----FESYFGTMPWLALPFGDPTI---KELTKYFDVQGIPCLVIIGPEGKTV 337
D + + L F D ++L G+P V++ P+G +
Sbjct: 101 IDTRDPEKPKTFLKEA--NLTRLGY-FNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEI 157
Query: 338 TK 339
Sbjct: 158 AT 159
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 1e-06
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 22/106 (20%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGV-----LVDVYEELRNNGSDFEVVFVSSD 115
G+ K+SD GK + A W PC L ++ +L FEVV ++ D
Sbjct: 50 GKPKKLSDFRGKTLLVNLWATWCVPC-----RKEMPALDELQGKLSGPN--FEVVAINID 102
Query: 116 ED-----LNAFNNYRACMPWLAVPYSDLETK--KALNRKFDIEGIP 154
+ L ++D + K + L G+P
Sbjct: 103 TRDPEKPKTFLKEAN--LTRLGY-FNDQKAKVFQDLKAIGRALGMP 145
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 1e-11
Identities = 28/157 (17%), Positives = 46/157 (29%), Gaps = 25/157 (15%)
Query: 220 LLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDF 279
L G + + SL + A WC PC K MP + Y+ K+
Sbjct: 8 LAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKK---------GSV 58
Query: 280 EVVFVSTDRDQT--SFESYFG-TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT 336
++V ++ D +F + P + T V +P V+ P+
Sbjct: 59 DMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGY 118
Query: 337 V-TKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK 372
T G E L K + +
Sbjct: 119 RQTITG------------EVNEKSLTDAVKLAHSKCR 143
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-07
Identities = 17/152 (11%), Positives = 39/152 (25%), Gaps = 16/152 (10%)
Query: 55 TSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114
+ + + L+ V + A W PC + Y+ + ++V ++
Sbjct: 8 LAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIAL 65
Query: 115 D--EDLNAF-NNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171
D +++ F P + +P VV
Sbjct: 66 DTSDNIGNFLKQTPVSYPIWRYT-GANSRNFMKTYGNTVGVLPFTVVE----AP------ 114
Query: 172 DGVELIYKYGIRAFPFTKEKLEELQKEEKEKH 203
G + ++ + +E H
Sbjct: 115 KCGYRQTITGEVNEKSLTDAVKLAHSKCREGH 146
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-11
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 14/110 (12%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
+SL GK L+F WC C P L + V ++T
Sbjct: 15 APFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-----------AVTFVGIAT 63
Query: 287 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGK 335
D + +S+ L D + ++V P V +G
Sbjct: 64 RADVGAMQSFVSKYN-LNFTNLNDAD-GVIWARYNVPWQPAFVFYRADGT 111
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-07
Identities = 19/137 (13%), Positives = 42/137 (30%), Gaps = 22/137 (16%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G + L+GK L+F W P C L V V +++ D+ A
Sbjct: 14 GAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAA----NPAVTFVGIATRADVGA 69
Query: 121 FNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIY 178
++ + + + + + + ++++ P V DG
Sbjct: 70 MQSFVSKYNLNFTNL----NDADGVIWARYNVPWQPAFVFY----RA------DGT--ST 113
Query: 179 KYGIRAFPFTKEKLEEL 195
++++L
Sbjct: 114 FVNNPTAAMSQDELSGR 130
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-11
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 13/115 (11%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
E V +S L G+ V + F A WC PC + +P ++ + + + F ++ VS
Sbjct: 19 EVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAG---------KPFRMLCVSI 69
Query: 287 DRDQTSF-ESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339
D E +F LP D K + K + G+P +I G + K
Sbjct: 70 DEGGKVAVEEFFRKTG-FTLPVLLDAD-KRVGKLYGTTGVPETFVIDRHGVILKK 122
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 8e-08
Identities = 36/153 (23%), Positives = 56/153 (36%), Gaps = 25/153 (16%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--- 117
GE VK+SDL+G+V + F A W PPC ++ + + F ++ VS DE
Sbjct: 18 GEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSIDEGGKV 75
Query: 118 --LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 175
F +P D K + + + G+P V+ D+ GV
Sbjct: 76 AVEEFFRKTGFTLP----VLLD--ADKRVGKLYGTTGVPETFVI----DR------HGVI 119
Query: 176 LIYKYGIRAF--PFTKEKLEELQKEEKEKHERQ 206
L G + P L + +E H
Sbjct: 120 LKKVVGAMEWDHPEVIAFLNNELSKAREGHHHH 152
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 6e-11
Identities = 16/121 (13%), Positives = 35/121 (28%), Gaps = 20/121 (16%)
Query: 226 DEKVPVSSLVGKTVGLYFSARWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284
+ ++ L GK + + C C +P + ++ V+ +
Sbjct: 18 ATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED---------KVAVLGL 68
Query: 285 STDRDQTSFESYFG----------TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEG 334
T + + P GD + + ++G P L++I G
Sbjct: 69 HTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAG 128
Query: 335 K 335
Sbjct: 129 D 129
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 22/148 (14%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTG-VLVDVYEELRNNGSDFEVVFVSSDEDLN 119
++ ++DL GKV + P C + V + V+ + + + +
Sbjct: 18 ATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTVFEHH 75
Query: 120 AFNNYRACMPWLA---VPY------SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL 170
+ +L + + + + G P L+++ DK
Sbjct: 76 EAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLI----DK----- 126
Query: 171 HDGVELIYKYGIRAFPFTKEKLEELQKE 198
G + +G + ++ L E
Sbjct: 127 -AGDLRAHHFGDVSELLLGAEIATLLGE 153
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 8e-11
Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 24/146 (16%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
++V +SSL GK V L F+A WC C K MP + K DF ++ +
Sbjct: 24 KQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIW-------LKHKDNADFALIGIDR 76
Query: 287 DRDQTSFESYFGT--MPWLALPFGDPTIKELTKY-FDVQGIPCLVIIGPEGKTVTKQGRN 343
D ++ + + + DP KY GI V+I EGK V
Sbjct: 77 DEPLEKVLAFAKSTGVTYPLGL--DPGADIFAKYALRDAGITRNVLIDREGKIVKLTR-- 132
Query: 344 LINLYQENAYPFTEAKLEFLEKQMEE 369
+ E + L +Q+ E
Sbjct: 133 ----------LYNEEEFASLVQQINE 148
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-09
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 26/153 (16%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGV-----LVDVYEELRNNGSDFEVVFVSSD 115
G++V +S L GKV L F+A+W C + + +DF ++ + D
Sbjct: 23 GKQVTLSSLRGKVVMLQFTASWCGVC-----RKEMPFIEKDIWLKHKDNADFALIGIDRD 77
Query: 116 EDLNAFNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173
E L + + + D GI V++ D+ +G
Sbjct: 78 EPLEKVLAFAKSTGVTYPLG--LDPGADIFAKYALRDAGITRNVLI----DR------EG 125
Query: 174 VELIYKYGIRA--FPFTKEKLEELQKEEKEKHE 204
+ F +++ E+ KE H
Sbjct: 126 KIVKLTRLYNEEEFASLVQQINEMLKEGHHHHH 158
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 1e-10
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 21/120 (17%)
Query: 224 PPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 283
P ++ + + SL GK V + F A CI C++ +P ++ YQ K V+
Sbjct: 70 PGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKD---------SGLAVIG 120
Query: 284 VSTDRDQT--------SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 335
V T + G + + D + + P +I G
Sbjct: 121 VHTPEYAFEKVPGNVAKGAANLG-ISYPIAL--DNN-YATWTNYRNRYWPAEYLIDATGT 176
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 1e-07
Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 27/151 (17%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--- 117
+ + + L GKV + F A C +V Y+ +++G V+ V + E
Sbjct: 72 NKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG--LAVIGVHTPEYAFE 129
Query: 118 ------LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171
N + + ++ T + P ++ D
Sbjct: 130 KVPGNVAKGAANLG--ISYPIALDNNYATWTN----YRNRYWPAEYLI----DA------ 173
Query: 172 DGVELIYKYGIRAFPFTKEKLEELQKEEKEK 202
G K+G + T+ + +L + K
Sbjct: 174 TGTVRHIKFGEGDYNVTETLVRQLLNDAKPG 204
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 5e-10
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 16/114 (14%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
E + K ++F + C C++ MP++ K + + VV V
Sbjct: 20 EVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQ----------DQLNVVAVHM 69
Query: 287 -----DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 335
D D + + P + LT F+ + +P + G+
Sbjct: 70 PRSEDDLDPGKIKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQ 122
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-05
Identities = 21/149 (14%), Positives = 46/149 (30%), Gaps = 28/149 (18%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--- 117
GE + + K T ++F + C + + ++ ++ VV V
Sbjct: 19 GEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD---QLNVVAVHMPRSEDD 75
Query: 118 ------LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171
+ P +++ AL F+ E +P V DK
Sbjct: 76 LDPGKIKETAAEHDITQPIF------VDSDHALTDAFENEYVPAYYVF----DK------ 119
Query: 172 DGVELIYKYGIRAFPFTKEKLEELQKEEK 200
G ++ G ++++ + E +
Sbjct: 120 TGQLRHFQAGGSGMKMLEKRVNRVLAETE 148
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 1e-09
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
V K + F A WC C + + Q K + ++ V++
Sbjct: 29 RPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS---------SANLITVAS 79
Query: 287 D-----RDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGK 335
+ F+ ++ + + LP D + + ++ P +IG +G
Sbjct: 80 PGFLHEKKDGEFQKWYAGLNYPKLPVVTDNG-GTIAQNLNISVYPSWALIGKDGD 133
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 8e-06
Identities = 20/146 (13%), Positives = 42/146 (28%), Gaps = 16/146 (10%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
V + K T + F A+W P C + G ++ + + ++ V+S L+
Sbjct: 28 NRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLHE 85
Query: 121 FNNYRACMPWLAVPYSDLE----TKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVEL 176
+ + + Y L + + +I P ++ K DG
Sbjct: 86 KKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALI----GK------DGDVQ 135
Query: 177 IYKYGIRAFPFTKEKLEELQKEEKEK 202
G + +
Sbjct: 136 RIVKGSINEAQALALIRNPNADLGSL 161
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-09
Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 13/116 (11%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
SL+GK L+F A WC C+ P + + + V V+
Sbjct: 16 HDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-----------EVTFVGVAG 64
Query: 287 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 341
+ + + P D + F V P + P G +G
Sbjct: 65 LDQVPAMQEFVNKYPVKTFTQLADTD-GSVWANFGVTQQPAYAFVDPHGNVDVVRG 119
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-05
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G + L GK L+F A W P C V+ V + V V+ + + A
Sbjct: 15 GHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAAS----HPEVTFVGVAGLDQVPA 70
Query: 121 FNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIP 154
+ + + +T ++ F + P
Sbjct: 71 MQEFVNKYPVKTFTQL---ADTDGSVWANFGVTQQP 103
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 4e-09
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS---TDRDQTS 292
G+ L+F WC PC+K +P+ S Y + ++V V+ ++++Q
Sbjct: 34 GQKTILHFWTSWCPPCKKELPQFQSFYDAHPS---------DSVKLVTVNLVNSEQNQQV 84
Query: 293 FESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340
E + L P D EL K + + IP ++ +G+ +
Sbjct: 85 VEDFIKANK-LTFPIVLDSK-GELMKEYHIITIPTSFLLNEKGEIEKTK 131
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS---SDED 117
GE++ + + +G+ T L+F +W PPC Y+ ++ ++V V+ S+++
Sbjct: 25 GEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS--VKLVTVNLVNSEQN 81
Query: 118 LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELI 177
++ D +K L +++ I IP +L ++ G
Sbjct: 82 QQVVEDFIKANKLTFPIVLD--SKGELMKEYHIITIPTSFLL----NE------KGEIEK 129
Query: 178 YKYGIRAFPFTKEKLEEL 195
K G P T E+L+E
Sbjct: 130 TKIG----PMTAEQLKEW 143
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 4e-09
Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 21/121 (17%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285
E + L GK V + C C +P+ I++ I + +V+ +
Sbjct: 21 EGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDE---------SQVQVIGLH 71
Query: 286 TDRDQTSFESYFGTMPWLA---LPF--------GDPTIKELTKYFDVQGIPCLVIIGPEG 334
+ + + ++ + F I K + ++G P +++ +G
Sbjct: 72 SVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKG 131
Query: 335 K 335
+
Sbjct: 132 R 132
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 23/152 (15%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTG-VLVDVYEELRNNGSDFEVVFVSSDEDLN 119
E + DL GKV + P C N ++ + + +V+ + S + +
Sbjct: 20 HEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEHH 77
Query: 120 AFNNYRACMPWLA---VPY-------SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 169
A ++ + + + + + +K+ +EG P +++ D+
Sbjct: 78 DVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILA----DR---- 129
Query: 170 LHDGVELIYKYGIRAFPFTKEKLEELQKEEKE 201
G ++G L L E E
Sbjct: 130 --KGRIRQVQFGQVDDFVLGLLLGSLLSETDE 159
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 7e-09
Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 8/116 (6%)
Query: 224 PPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 283
++ +S + V L +WC PC L I+++++ V+
Sbjct: 47 EEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQA---AGNGDTPGGTVLG 103
Query: 284 VSTDRDQTS----FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 335
++ F + G + + ++ IP +++ + +
Sbjct: 104 INVRDYSRDIAQDFVTDNG-LDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHR 158
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGS----DFEVVFVSSDE 116
G ++ +SD E +V L W PC + + L ++EEL+ G+ V+ ++ +
Sbjct: 49 GTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRD 108
Query: 117 D 117
Sbjct: 109 Y 109
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-07
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 27/105 (25%)
Query: 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 295
GK V L A WC+ C++F S + AL D ++ + +
Sbjct: 31 GKPVMLDLYADWCVACKEFEKYTFS--------DPQVQKALADTVLLQANVTAN------ 76
Query: 296 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340
D L K+ +V G+P ++ +G+ +
Sbjct: 77 -------------DAQDVALLKHLNVLGLPTILFFDGQGQEHPQA 108
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-07
Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 17/121 (14%)
Query: 224 PPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 283
P + V +++ V + F A WC C+ P L + + E G F V+
Sbjct: 19 PKGQPVTPATVSKPAV-IVFWASWCTVCKAEFPGLHRVAE-------ETGV---PFYVIS 67
Query: 284 VSTDRDQTSFESYFG----TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339
+ Y +P LA D E+ F V G P ++ EGK V
Sbjct: 68 REPRDTREVVLEYMKTYPRFIPLLASDR-DRP-HEVAARFKVLGQPWTFVVDREGKVVAL 125
Query: 340 Q 340
Sbjct: 126 F 126
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-05
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 34/110 (30%)
Query: 236 GKTVGLYFSARWCIPCEKFMPKLLS---IYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 292
G+ V +YF + C C++ +LS + + ++ FV +
Sbjct: 19 GRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR--------------FVVASVSVDT 64
Query: 293 FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 342
E +EL + + V G P V + P+ + GR
Sbjct: 65 PEG-----------------QELARRYRVPGTPTFVFLVPKAGAWEEVGR 97
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-05
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 30/131 (22%)
Query: 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 295
K L F A WC C + + K L + + FEVV +
Sbjct: 29 HKPTLLVFGANWCTDC-RALDKSLRNQKNTAL-------IAKHFEVVKIDVGNFDR---- 76
Query: 296 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF 355
+ + + GIP +V++ +GK NA
Sbjct: 77 -------------NLELSQAYGDPIQDGIPAVVVVNSDGKVRYTT----KGGELANARKM 119
Query: 356 TEAKL-EFLEK 365
++ + +F K
Sbjct: 120 SDQGIYDFFAK 130
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 9e-05
Identities = 15/122 (12%), Positives = 35/122 (28%), Gaps = 43/122 (35%)
Query: 237 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESY 296
+ V L+ C C+ + K+ + + V +
Sbjct: 19 QLVLLFIKTENCGVCDVMLRKVNYVLENYNY-------------VEKIEILLQD------ 59
Query: 297 FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR--------NLINLY 348
++E+ + V P +++ GK + ++ R I L+
Sbjct: 60 ---------------MQEIAGRYAVFTGPTVLLF-YNGKEILRESRFISLENLERTIQLF 103
Query: 349 QE 350
+E
Sbjct: 104 EE 105
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 1e-04
Identities = 10/98 (10%), Positives = 23/98 (23%), Gaps = 31/98 (31%)
Query: 243 FSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 302
F C C + + + K + + + + ++
Sbjct: 33 FKTDTCPYCVEMQK----ELSYVSKEREGKFN------IYYARLEEEKN----------- 71
Query: 303 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340
+L +D +P V + EG
Sbjct: 72 ----------IDLAYKYDANIVPTTVFLDKEGNKFYVH 99
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A Length = 170 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 61 GEEVKVSDLEGKVTALYFSANWY---P-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115
G E ++ +L+GK L Y C T L+ V +L G DF V+ + D
Sbjct: 18 GNEFQLKNLKGKPIILSPI---YTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFD 73
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 28/115 (24%)
Query: 226 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285
E + + + K + + WC PC +++ + + + + F FV+
Sbjct: 17 PEALKRAEVEDKLLFVDCFTTWCGPC-----------KRLSKVVFKDSLVADYFNRHFVN 65
Query: 286 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340
D E EL K + V P L+ I G+ V +
Sbjct: 66 LKMDMEKGEG-----------------VELRKKYGVHAYPTLLFINSSGEVVYRL 103
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 4e-04
Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 34/144 (23%)
Query: 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 295
G + + WC C+ PK E + +F V V+ + ++
Sbjct: 46 GLPLMVIIHKSWCGACKALKPKFAE--------STEISELSHNF--VMVNLEDEE----- 90
Query: 296 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF 355
+P ++ D IP ++ + P GK + +IN +Y +
Sbjct: 91 -------------EPKDEDF--SPDGGYIPRILFLDPSGKVHPE----IINENGNPSYKY 131
Query: 356 TEAKLEFLEKQMEEEAKNLPRSEF 379
E + + M+E + L F
Sbjct: 132 FYVSAEQVVQGMKEAQERLTGDAF 155
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 7e-04
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 20/107 (18%)
Query: 236 GKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 294
K +GL+F+ + WC+ C M + + K + V D Q + +
Sbjct: 47 HKPIGLFFTGSDWCMWC-IKMQDQILQSSEFKHFAGVH--------LHMVEVDFPQKNHQ 97
Query: 295 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 341
+EL + V G P LV I EGK + + G
Sbjct: 98 P----------EEQRQKNQELKAQYKVTGFPELVFIDAEGKQLARMG 134
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Length = 172 | Back alignment and structure |
|---|
Score = 38.9 bits (90), Expect = 9e-04
Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 19/137 (13%)
Query: 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 295
K V L F+ C+ C K M + K+ + D+ ++ + D E
Sbjct: 47 NKPVMLDFTGYGCVNCRK-MELAVWTDPKVSSII------NNDYVLITLYVDNKTPLTEP 99
Query: 296 YFGTMPWLALPF---GDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENA 352
GD F P V+I EG + K Y E+
Sbjct: 100 VKIMENGTERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYA-----YDEDI 154
Query: 353 YPFTEAKLEFLEKQMEE 369
+ + FL+ +E
Sbjct: 155 SKY----INFLQTGLEN 167
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 438 | |||
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.94 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.89 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.89 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.89 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.89 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.89 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.88 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.88 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.88 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.88 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.88 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.88 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.87 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.87 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.87 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 99.87 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.87 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.87 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.87 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.87 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.86 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.86 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.86 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.86 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.86 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.86 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.86 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.86 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 99.86 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.85 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.85 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.85 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.85 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.84 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 99.84 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.84 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.84 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.84 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.84 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.83 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.83 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.83 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.83 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 99.83 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 99.83 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.83 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.83 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.83 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.83 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.83 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.83 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 99.83 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 99.83 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 99.82 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.82 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.82 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.82 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 99.82 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.82 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 99.82 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.82 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.82 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.82 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 99.82 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.82 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.82 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.82 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 99.82 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.82 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.81 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 99.81 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.81 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.81 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.7 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.81 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.81 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.81 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.81 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.81 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.7 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.81 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.81 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.81 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.81 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.8 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 99.8 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.8 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.8 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.8 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.8 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.8 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 99.8 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.8 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.8 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.8 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.8 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.79 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.79 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.79 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.79 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.79 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.79 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.79 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.79 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.78 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.78 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.78 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.78 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.78 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.78 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 99.77 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.77 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.77 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 99.77 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.64 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.77 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.77 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.77 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.77 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.77 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.76 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.76 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.76 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.76 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.76 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.76 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.75 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.75 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 99.75 | |
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 99.75 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.75 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.74 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 99.74 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.74 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.74 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.74 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.74 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.74 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.74 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.74 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.74 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.74 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.74 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.73 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 99.73 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.73 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.73 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.73 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.73 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.73 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 99.73 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.72 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 99.72 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.57 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.72 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.72 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 99.72 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.72 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 99.72 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.72 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.72 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.72 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.72 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.72 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.71 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.71 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.71 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.71 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.71 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.71 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 99.71 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.71 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 99.71 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 99.71 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.71 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 99.71 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 99.71 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 99.7 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.7 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.7 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 99.7 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 99.69 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.69 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 99.69 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 99.69 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.69 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 99.68 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.68 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.68 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 99.68 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.68 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.68 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.67 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.67 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.67 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.67 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.67 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 99.65 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.65 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.65 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.63 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.63 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 99.62 | |
| 1v5n_A | 89 | PDI-like hypothetical protein AT1G60420; DC1 domai | 99.62 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.61 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.61 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 99.61 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.6 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.6 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.59 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.59 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 99.59 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.58 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.56 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.56 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 99.56 | |
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 99.56 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.55 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.54 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.53 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.53 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.53 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.51 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.5 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 99.49 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.49 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.49 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.48 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.48 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.47 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.47 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.47 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.47 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.47 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.47 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.46 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.46 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.46 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.45 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.45 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.45 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.45 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.45 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.45 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.45 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.45 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.45 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.44 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.44 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.44 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.44 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.44 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.44 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.43 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.43 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.43 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.43 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.43 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.43 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.42 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.42 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.42 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.42 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.42 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.42 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.42 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.42 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.42 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.42 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.42 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.41 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.4 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.4 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.4 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.4 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.4 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.4 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.39 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.39 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.38 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.38 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.38 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.38 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.38 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.38 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 99.08 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.38 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.37 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.37 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.37 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.37 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.37 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.36 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.36 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.36 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.36 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.36 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.35 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.35 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.35 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.34 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.34 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.34 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.33 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.33 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.33 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.32 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.32 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.31 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.31 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.3 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.3 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.3 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.3 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.3 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 99.29 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.29 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.29 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.28 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.28 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.28 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.28 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.27 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.27 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.27 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.26 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.26 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.26 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.26 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.25 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.25 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.25 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.25 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.25 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.25 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.25 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.25 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.24 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.24 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.23 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.23 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.23 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.23 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.22 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.22 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.22 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.21 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.21 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.21 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.2 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.2 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.2 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.2 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 98.83 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.2 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.19 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.82 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.19 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.19 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.19 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.19 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.18 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 99.18 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 99.18 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.18 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.18 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.18 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 99.17 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.17 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.17 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.17 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.17 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.17 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.17 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.16 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.16 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.16 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.15 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.15 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.15 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.15 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.15 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.15 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.15 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.14 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.14 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.14 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.14 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.14 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.14 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.13 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.13 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.13 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.13 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.13 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.12 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.12 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.12 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.11 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.11 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.11 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.11 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.1 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.09 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.09 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 99.09 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.09 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.08 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.08 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.07 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 99.07 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 99.07 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.04 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.03 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.03 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.01 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.01 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 99.01 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.0 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 98.98 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.52 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 98.96 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 98.96 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 98.94 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 98.94 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 98.94 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.93 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 98.9 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 98.89 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 98.89 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 98.89 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.85 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.83 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 98.83 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 98.79 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.74 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 98.74 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.72 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.72 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.71 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 98.66 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.65 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 98.65 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.61 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 98.58 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 98.55 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.5 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 98.48 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 98.46 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 98.44 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.41 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 98.39 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 98.36 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 98.35 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.35 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 98.35 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.34 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.34 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.33 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.31 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.31 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.29 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.29 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 98.24 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 98.2 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 98.2 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 98.19 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 98.18 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 98.09 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 98.08 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.08 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 98.03 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 98.02 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 97.94 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 97.94 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 97.92 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 97.84 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 97.83 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 97.82 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 97.76 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 97.7 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 97.69 | |
| 4dvc_A | 184 | Thiol:disulfide interchange protein DSBA; pilus as | 97.68 | |
| 3feu_A | 185 | Putative lipoprotein; alpha-beta structure, struct | 97.67 | |
| 3l9v_A | 189 | Putative thiol-disulfide isomerase or thioredoxin; | 97.64 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 97.64 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 97.63 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 97.59 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 97.55 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 97.47 | |
| 2ec4_A | 178 | FAS-associated factor 1; UAS domain, protein FAF1, | 97.47 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 97.46 | |
| 4h86_A | 199 | Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch | 97.46 | |
| 2lqo_A | 92 | Putative glutaredoxin RV3198.1/MT3292; TRX fold, o | 97.41 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 97.37 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 97.37 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 97.34 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 97.33 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 97.32 |
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-26 Score=210.84 Aligned_cols=201 Identities=19% Similarity=0.293 Sum_probs=143.1
Q ss_pred CCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCC
Q 013684 58 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD 137 (438)
Q Consensus 58 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d 137 (438)
.++++.+.....+|++++|+|||+||++|+.+.|.|.++++++++.+.++.++.|+.|..
T Consensus 19 ~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-------------------- 78 (241)
T 3idv_A 19 VLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSA-------------------- 78 (241)
T ss_dssp EECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTC--------------------
T ss_pred EecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCC--------------------
Confidence 444554444444789999999999999999999999999999988765577777776644
Q ss_pred hHHHHHHhhhcCcCccceEEEecCCCCCCCcccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCC
Q 013684 138 LETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDR 217 (438)
Q Consensus 138 ~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~ 217 (438)
..+++.|+|.++|++++++ +|..+... |. ...+.+......... ......+
T Consensus 79 ----~~l~~~~~v~~~Pt~~~~~----~g~~~~~~--------g~----~~~~~l~~~i~~~~~---------~~~~~~~ 129 (241)
T 3idv_A 79 ----SVLASRFDVSGYPTIKILK----KGQAVDYE--------GS----RTQEEIVAKVREVSQ---------PDWTPPP 129 (241)
T ss_dssp ----HHHHHHTTCCSSSEEEEEE----TTEEEECC--------SC----SCHHHHHHHHHHHHS---------TTCCCCC
T ss_pred ----HHHHHhcCCCcCCEEEEEc----CCCccccc--------Cc----ccHHHHHHHHhhccC---------ccccccc
Confidence 6789999999999999997 56554221 11 122222222111110 0011122
Q ss_pred CCccCCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHH
Q 013684 218 GYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYF 297 (438)
Q Consensus 218 ~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 297 (438)
......++. .+...-..+++++|+||++||++|+.+.|.+.++++++.++ ..++.++.|+++.+
T Consensus 130 ~~~~~~~~~-~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-------~~~v~~~~vd~~~~-------- 193 (241)
T 3idv_A 130 EVTLVLTKE-NFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKR-------SPPIPLAKVDATAE-------- 193 (241)
T ss_dssp CSSEECCTT-THHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTS-------SSCCCEEEEETTTC--------
T ss_pred ccceeccHH-HHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhcc-------CCcEEEEEEECCCC--------
Confidence 222244454 44332235789999999999999999999999999999865 34688888888765
Q ss_pred hcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 298 GTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 298 ~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.++++.|+|.++||++++ ++|+.+..
T Consensus 194 ---------------~~l~~~~~v~~~Pt~~~~-~~g~~~~~ 219 (241)
T 3idv_A 194 ---------------TDLAKRFDVSGYPTLKIF-RKGRPYDY 219 (241)
T ss_dssp ---------------HHHHHHTTCCSSSEEEEE-ETTEEEEC
T ss_pred ---------------HHHHHHcCCcccCEEEEE-ECCeEEEe
Confidence 678999999999999999 46877654
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.4e-23 Score=175.01 Aligned_cols=118 Identities=14% Similarity=0.267 Sum_probs=110.0
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHH---HHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLS---IYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+ ++++++++ +++|++|++
T Consensus 2 ~~G~~~p~f~l~~~~g~-~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~---------~~~~v~v~~ 71 (142)
T 3ewl_A 2 NAGMKAADFTYVTVHGD-NSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG---------TLRVLAIYP 71 (142)
T ss_dssp CTTSBCCCCEEECTTCC-EEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHT---------SEEEEEEEC
T ss_pred CCCCcCCCCEEECCCCC-EEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccC---------CeEEEEEEe
Confidence 36899999999 99999 999999999999999999999999999999998 99999876 799999999
Q ss_pred CCCHHHHHHHHhcCCCcccccCCchhHHHHH--hcCcCceeeEEEECCCCcEEEc
Q 013684 287 DRDQTSFESYFGTMPWLALPFGDPTIKELTK--YFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~--~~~v~~~P~~~lid~~G~i~~~ 339 (438)
|.+.+.+++++++++ +.+|+..|....+.. .|+|.++|+++|||++|+++++
T Consensus 72 d~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 125 (142)
T 3ewl_A 72 DENREEWATKAVYMP-QGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILK 125 (142)
T ss_dssp SSCHHHHHHHHTTSC-TTCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEEC
T ss_pred cCCHHHHHHHHHHcC-CCcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEec
Confidence 999999999999988 688988888888876 9999999999999999999985
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-23 Score=175.24 Aligned_cols=120 Identities=13% Similarity=0.199 Sum_probs=109.3
Q ss_pred hhhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHH---HHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 210 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLS---IYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 210 ~~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
..+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+ +++++++. +++||+|+
T Consensus 5 ~~~G~~ap~f~l~~~~g~-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~---------~~~vi~i~ 74 (142)
T 3eur_A 5 NRLGTKALNFTYTLDSGV-KGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAK---------KLKVLSIY 74 (142)
T ss_dssp TCTTSBCCCCEEEETTSC-EEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTT---------SEEEEEEE
T ss_pred hcCCCccCCcEEEcCCCC-EeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccC---------CeEEEEEE
Confidence 467999999999 99999 999999999999999999999999999999999 99999865 89999999
Q ss_pred cCCCHHHHHHHHhcCCCcccccCCchhH--HHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFGTMPWLALPFGDPTIK--ELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~~~~~~p~~~d~~~--~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.|.+.+.+++++++++ +.++...|... .+.+.|+|.++|+++|||++|+|+++.
T Consensus 75 ~d~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 130 (142)
T 3eur_A 75 PDEELDEWKKHRNDFA-KEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD 130 (142)
T ss_dssp CSSCHHHHHHHGGGSC-TTSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEE
T ss_pred cCCCHHHHHHHHHhcc-cccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecC
Confidence 9999999999999988 56676666544 378999999999999999999999884
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-23 Score=175.30 Aligned_cols=127 Identities=37% Similarity=0.681 Sum_probs=115.4
Q ss_pred hhcCCCC-Ccc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRG-YLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~-f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
++..+|+ |++ +.+|+ .+++++++||+++|+||++||++|+.+.|.|.+++++++++ .+++|++|++|.+
T Consensus 3 ~~~~~P~~f~l~~~~g~-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--------~~~~vv~v~~d~~ 73 (144)
T 1i5g_A 3 LKKFFPYSTNVLKGAAA-DIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK--------KNFEVMLISWDES 73 (144)
T ss_dssp TTTSCSSCSEEEETTEE-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCSS
T ss_pred hhhhCCCceEEEcCCCC-EecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC--------CCEEEEEEeCCCC
Confidence 4678899 999 99999 99999999999999999999999999999999999999852 2799999999999
Q ss_pred HHHHHHHHhcCCCcccccCC-chhHHHHHhcCcCceeeEEEEC-CCCcEEEcccchhhhh
Q 013684 290 QTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIG-PEGKTVTKQGRNLINL 347 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~-d~~~~l~~~~~v~~~P~~~lid-~~G~i~~~~~~~~~~~ 347 (438)
.+.+++++++++|..+|+.. +....+++.|+|.++|+++||| ++|+++.+.+.+.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~~ 133 (144)
T 1i5g_A 74 AEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVK 133 (144)
T ss_dssp HHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHH
T ss_pred HHHHHHHHHhCCccccccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhhh
Confidence 99999999999999999887 6678999999999999999999 9999999987665533
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=175.39 Aligned_cols=119 Identities=24% Similarity=0.311 Sum_probs=110.1
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.+.|.|.+++++|+++ +++|++|++|.+
T Consensus 4 ~~g~~~p~f~l~~~~G~-~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~v~~d~~ 73 (152)
T 2lrn_A 4 ATGSVAPAITGIDLKGN-SVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK---------GFTIYGVSTDRR 73 (152)
T ss_dssp CTTEECCCCEEECSSSC-EEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTT---------TEEEEEEECCSC
T ss_pred cCCCcCCCceeEcCCCC-EEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccC---------CeEEEEEEccCC
Confidence 36888999999 99999 99999999999999999999999999999999999999865 799999999998
Q ss_pred HHHHHHHHhcCCCcccccCCch---hHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDPT---IKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~---~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+.+++++++++ +.+|+..|. ...+.+.|+|.++|+++|||++|+++.+.
T Consensus 74 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 126 (152)
T 2lrn_A 74 EEDWKKAIEEDK-SYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKE 126 (152)
T ss_dssp HHHHHHHHHHHT-CCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEEC
T ss_pred HHHHHHHHHHhC-CCCeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEee
Confidence 999999999877 678887776 78999999999999999999999999874
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.1e-23 Score=179.72 Aligned_cols=141 Identities=30% Similarity=0.567 Sum_probs=124.3
Q ss_pred HHHhhccchhH-HHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 36 RFLIMSLSQWY-VQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 36 ~~~~g~~~p~f-~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
.+.+|.++|+| + +.+.+| .+++++++||++||+||++||++|+.++|.|.++++++++.. +++|++|++
T Consensus 21 ~~~vG~~~P~f~~--------l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~-~v~vv~v~~ 90 (165)
T 3s9f_A 21 MSGVAKHLGEALK--------LRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSK-NFEIILASW 90 (165)
T ss_dssp -CHHHHHHHHTSC--------EEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEEC
T ss_pred hhhhcccCCccee--------eecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCC-CeEEEEEec
Confidence 34588999999 7 889999 999999999999999999999999999999999999998742 599999999
Q ss_pred CCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCC-CCcccccchhHH-hhhCCCCccCCh
Q 013684 115 DEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDK-DDATLHDGVELI-YKYGIRAFPFTK 189 (438)
Q Consensus 115 D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~-G~v~~~~~~~~i-~~~~~~a~p~~~ 189 (438)
|.+.+.+++++++++|..+++...+....+++.|+|.++|+++|||+ + |+++.+.+...+ .+.....|||..
T Consensus 91 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~---~~G~iv~~~~~~~~~~d~~~~~fpw~~ 164 (165)
T 3s9f_A 91 DEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNA---DTGDTVTTRARHALTQDPMGEQFPWRD 164 (165)
T ss_dssp CCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEET---TTCCEEESCHHHHHHHCTTCTTTTCCC
T ss_pred CCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeC---CCCEEEecccHHHHhhCcccccCCCCC
Confidence 99999999999999999998876665589999999999999999999 8 999999886544 445555688764
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=173.26 Aligned_cols=139 Identities=23% Similarity=0.411 Sum_probs=120.1
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 290 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~ 290 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.+.|.|.+++++++++ ++.|++|++|.+.
T Consensus 2 ~G~~~p~~~l~~~~g~-~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~---------~v~vv~v~~d~~~ 71 (151)
T 2f9s_A 2 EGSDAPNFVLEDTNGK-RIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ---------GVEIVAVNVGESK 71 (151)
T ss_dssp CCEECCCCEEECTTCC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---------TEEEEEEEESCCH
T ss_pred CCCcCCcceeEcCCCC-EEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC---------CeEEEEEECCCCH
Confidence 5788999999 99999 99999999999999999999999999999999999999865 7999999999888
Q ss_pred HHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHH
Q 013684 291 TSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEE 370 (438)
Q Consensus 291 ~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~ 370 (438)
+.+++++++++ +.+|+..|....+.+.|+|.++|+++|+|++|+++.+. .|. .+ .++|.+.|+++
T Consensus 72 ~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-------~G~----~~---~~~l~~~l~~l 136 (151)
T 2f9s_A 72 IAVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVV-------TGT----MT---ESMIHDYMNLI 136 (151)
T ss_dssp HHHHHHHHHHT-CCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEE-------ESC----CC---HHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCceEEECCchHHHHhcCCCCCCeEEEECCCCcEEEEE-------eCC----CC---HHHHHHHHHHH
Confidence 99999999888 67899888889999999999999999999999999873 232 12 35566667666
Q ss_pred hccCC
Q 013684 371 AKNLP 375 (438)
Q Consensus 371 ~~~~~ 375 (438)
+++..
T Consensus 137 l~~~~ 141 (151)
T 2f9s_A 137 KPGET 141 (151)
T ss_dssp SCC--
T ss_pred Hhhhh
Confidence 65443
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-23 Score=175.19 Aligned_cols=119 Identities=16% Similarity=0.088 Sum_probs=101.8
Q ss_pred hhhcCCCCCccCCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH
Q 013684 211 LLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 290 (438)
Q Consensus 211 ~~g~~~~~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~ 290 (438)
.+|..+|+|+++.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|+++ +++||+|++|.+.
T Consensus 8 ~~G~~~P~f~l~~~g~-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~---------~~~vv~vs~d~~~ 77 (143)
T 4fo5_A 8 NPGDLAPRIEFLGNDA-KASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD---------KIAMCSISMDEKE 77 (143)
T ss_dssp STTSBCCCCCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT---------TEEEEEEECCSCH
T ss_pred CCcccCCceEEcCCCC-EEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC---------CEEEEEEEccCCH
Confidence 3688999999988999 99999999999999999999999999999999999999765 7999999999999
Q ss_pred HHHHHHHhcCCCccc-ccCCc---hhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 291 TSFESYFGTMPWLAL-PFGDP---TIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 291 ~~~~~~~~~~~~~~~-p~~~d---~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+.+++++++++ +.+ +...| ....+.+.|+|.++|+++|||++|+++.+.
T Consensus 78 ~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 130 (143)
T 4fo5_A 78 SIFTETVKIDK-LDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAAN 130 (143)
T ss_dssp HHHHHHHHHHT-CCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEES
T ss_pred HHHHHHHHHhC-CCCceeeecccccchHHHHHcCCCCCCcEEEECCCCEEEEcc
Confidence 99999999876 455 44333 346899999999999999999999999884
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-22 Score=171.39 Aligned_cols=119 Identities=19% Similarity=0.253 Sum_probs=109.8
Q ss_pred hhhcCCCCCcc-CCCCCceeecc--ccCCCEEEEEEecCCChh--hhhhhHHHHHHHHHH-HhhhhhcCCCCCCEEEEEE
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVS--SLVGKTVGLYFSARWCIP--CEKFMPKLLSIYQKI-KQNLVEKGDALEDFEVVFV 284 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~--~~~gk~vll~F~a~wC~~--C~~~~p~l~~l~~~~-~~~~~~~~~~~~~~~vv~i 284 (438)
.+|..+|+|++ +.+|+ .++++ +++||+++|+||++||++ |+.++|.|.+++++| +++ +++|++|
T Consensus 6 ~~G~~~p~f~l~~~~g~-~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~---------~~~~v~v 75 (150)
T 3fw2_A 6 EIGKYAPFFSLPNAKGE-KITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK---------YIGMLGI 75 (150)
T ss_dssp STTSBCCCCCEEBTTCC-EECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCS---------SEEEEEE
T ss_pred cCCCcCCccEeECCCCC-EEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCC---------CeEEEEE
Confidence 36899999999 99999 99999 999999999999999999 999999999999999 644 7999999
Q ss_pred ecCCCHHHHHHHHhcCCCcccccCCch---hHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 285 STDRDQTSFESYFGTMPWLALPFGDPT---IKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 285 s~d~~~~~~~~~~~~~~~~~~p~~~d~---~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
++|.+.+.+++++++++ +.+|+..|. ...+.+.|++.++|+++|||++|+++.+.
T Consensus 76 ~~d~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 133 (150)
T 3fw2_A 76 SLDVDKQQWKDAIKRDT-LDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKN 133 (150)
T ss_dssp ECCSCHHHHHHHHHHTT-CCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred EcCCCHHHHHHHHHHhC-CCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEcc
Confidence 99999899999999888 677777765 67999999999999999999999999884
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=172.20 Aligned_cols=138 Identities=30% Similarity=0.598 Sum_probs=121.9
Q ss_pred hhccchh-HHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 39 IMSLSQW-YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 39 ~g~~~p~-f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
+|..+|+ |+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++. .++++++|++|.+
T Consensus 3 ~~~~~P~~f~--------l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~vv~v~~d~~ 73 (144)
T 1i5g_A 3 LKKFFPYSTN--------VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDES 73 (144)
T ss_dssp TTTSCSSCSE--------EEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSS
T ss_pred hhhhCCCceE--------EEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CCEEEEEEeCCCC
Confidence 5778888 88 899999999999999999999999999999999999999999999863 2599999999999
Q ss_pred HHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEec-CCCCCCCcccccchhHHhhhCC-CCccCC
Q 013684 118 LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQ-PYDDKDDATLHDGVELIYKYGI-RAFPFT 188 (438)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd-~~~~~G~v~~~~~~~~i~~~~~-~a~p~~ 188 (438)
.+.+++++++++|..+++...+....+++.|++.++|+++||| + +|+++.+.+...+..... ..|||.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~---~G~i~~~~~~~~~~~~~~~~~~~w~ 143 (144)
T 1i5g_A 74 AEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEAD---SGNIITTQARTMVVKDPEAKDFPWP 143 (144)
T ss_dssp HHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETT---TCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred HHHHHHHHHhCCccccccCchHHHHHHHHHcCCCCCCEEEEEECC---CCcEEeccchhhhhhCcccccCCCC
Confidence 9999999999999888876545558999999999999999999 9 999999998877766543 336653
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-22 Score=170.96 Aligned_cols=141 Identities=24% Similarity=0.387 Sum_probs=122.0
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
.+|..+|+|.+ + +|+ .+++++++||+++|+||++||++|+.+.|.|.+++++++++ +++|++|++|.+
T Consensus 4 ~~G~~~P~f~l~~-~g~-~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~---------~~~~v~v~~d~~ 72 (152)
T 3gl3_A 4 DKGDKAPDFALPG-KTG-VVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK---------GFQVVAVNLDAK 72 (152)
T ss_dssp CTTSBCCCCEEEB-SSS-EEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGG---------TEEEEEEECCSS
T ss_pred CCCCcCCceEeeC-CCC-eEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC---------CeEEEEEECCCC
Confidence 36889999999 8 999 99999999999999999999999999999999999999876 799999999999
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHH
Q 013684 290 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEE 369 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~ 369 (438)
.+.+++++++++ +.+++..|....+.+.|++.++|+++|||++|+++.+. .| ..+...++|.+.|++
T Consensus 73 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-------~g-----~~~~~~~~l~~~i~~ 139 (152)
T 3gl3_A 73 TGDAMKFLAQVP-AEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQH-------VG-----FRPADKEALEQQILA 139 (152)
T ss_dssp HHHHHHHHHHSC-CCSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEE-------ES-----CCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEE-------cc-----CCCcCHHHHHHHHHH
Confidence 999999999988 68899888889999999999999999999999999874 22 223345677777777
Q ss_pred HhccCC
Q 013684 370 EAKNLP 375 (438)
Q Consensus 370 ~~~~~~ 375 (438)
.+...+
T Consensus 140 ~~~~~~ 145 (152)
T 3gl3_A 140 ALGGNE 145 (152)
T ss_dssp HTC---
T ss_pred HHcccc
Confidence 665443
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-22 Score=182.45 Aligned_cols=151 Identities=9% Similarity=0.082 Sum_probs=125.7
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCC-EEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d- 287 (438)
.+|..+|+|++ +.+|+ .+++++++|| ++||+||++|||+|+.++|.|.+++++|+++ +++||+|++|
T Consensus 33 ~~G~~aP~f~l~~~~G~-~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~v~vv~Vs~d~ 102 (218)
T 3u5r_E 33 TLGTRAADFVLPDAGGN-LFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQ---------GLAVVAINSND 102 (218)
T ss_dssp CTTCBCCCCCEECTTCC-EECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTT---------TEEEEEEECSC
T ss_pred CCCCcCCCcEeECCCCC-EEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhC---------CcEEEEEECCc
Confidence 36889999999 99999 9999999999 5999999999999999999999999999865 7999999996
Q ss_pred ------CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHH
Q 013684 288 ------RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLE 361 (438)
Q Consensus 288 ------~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~ 361 (438)
.+.+.+++|+++++ +.+|+..|....+.+.|++.++|+++|||++|++++++..+... .+. ......+
T Consensus 103 ~~~~~~d~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g~~d~~~-~~~----~~~~~~~ 176 (218)
T 3u5r_E 103 AQAFPEETLERVGAEVKAYG-YGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHGQFDDAR-PGN----GKDVTGA 176 (218)
T ss_dssp TTTCGGGSHHHHHHHHHHHT-CCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEECSSSCC-TTS----CCCCCCH
T ss_pred ccccccCCHHHHHHHHHHhC-CCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEeccccccc-ccc----ccccCHH
Confidence 57788999999888 78999999889999999999999999999999999875433210 000 0111236
Q ss_pred HHHHHHHHHhccCCCc
Q 013684 362 FLEKQMEEEAKNLPRS 377 (438)
Q Consensus 362 ~L~~~i~~~~~~~~~~ 377 (438)
+|.++|++++++.+..
T Consensus 177 ~l~~~i~~ll~~~~~~ 192 (218)
T 3u5r_E 177 DLRAAVDAVLKGKDVG 192 (218)
T ss_dssp HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCCC
Confidence 6777788877766543
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-22 Score=175.21 Aligned_cols=138 Identities=15% Similarity=0.178 Sum_probs=121.0
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCE-EEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKT-VGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~-vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
+|..+|+|++ +.+|+ .+++++++||+ ++|+|| ++||++|..++|.|.+++++|+++ +++||+|++|
T Consensus 4 ~G~~~P~f~l~~~~G~-~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~---------~v~vv~vs~d- 72 (161)
T 3drn_A 4 VGDKAPLFEGIADNGE-KISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDY---------DVVVIGVSSD- 72 (161)
T ss_dssp TTSBCCCCEEEETTSC-EEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTT---------CEEEEEEESC-
T ss_pred CCCcCCCeEeecCCCC-EEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHc---------CCEEEEEeCC-
Confidence 6889999999 99999 99999999997 999999 999999999999999999999865 7999999998
Q ss_pred CHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCc----eeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHH
Q 013684 289 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG----IPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLE 364 (438)
Q Consensus 289 ~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~----~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~ 364 (438)
+.+.+++|+++++ +.+|+..|....+.+.|++.+ +|+++|||++|+|+++.. |.. .....++++.
T Consensus 73 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~~-------g~~---~~~~~~~~il 141 (161)
T 3drn_A 73 DINSHKRFKEKYK-LPFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIYN-------SQM---NPANHVNEAL 141 (161)
T ss_dssp CHHHHHHHHHHTT-CCSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEEE-------CSS---CTTHHHHHHH
T ss_pred CHHHHHHHHHHhC-CCceEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEEe-------cCC---CCCcCHHHHH
Confidence 6789999999988 679999998899999999999 999999999999998742 211 2345667777
Q ss_pred HHHHHHh
Q 013684 365 KQMEEEA 371 (438)
Q Consensus 365 ~~i~~~~ 371 (438)
+.|+++.
T Consensus 142 ~~l~~l~ 148 (161)
T 3drn_A 142 KALKQIK 148 (161)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 7776653
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-22 Score=171.18 Aligned_cols=120 Identities=14% Similarity=0.218 Sum_probs=110.7
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.+.|.|.+++++++++ ++.|++|++|.+
T Consensus 6 ~~G~~~p~~~l~~~~g~-~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~---------~~~~v~v~~d~~ 75 (148)
T 3hcz_A 6 LLGKKAPNLYMTDTTGT-YRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK---------GIQVYAANIERK 75 (148)
T ss_dssp CTTSBCCCCCCBCTTSC-BCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG---------TEEEEEEECCSS
T ss_pred CCCCcCCceEEecCCCC-EEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC---------CEEEEEEEecCC
Confidence 46899999999 99999 99999999999999999999999999999999999999876 799999999988
Q ss_pred HHHHHHHHhcCCCcccccCCchhHH--HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDPTIKE--LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~~~--l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+.++++++++++-.+++..|.... +.+.|++.++|+++|+|++|+++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 128 (148)
T 3hcz_A 76 DEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKR 128 (148)
T ss_dssp SHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEES
T ss_pred HHHHHHHHHHcCCCCceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEec
Confidence 8899999999885448887777666 99999999999999999999999874
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=177.98 Aligned_cols=125 Identities=37% Similarity=0.766 Sum_probs=112.8
Q ss_pred hhhcCCCCC-cc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 211 LLTNHDRGY-LL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 211 ~~g~~~~~f-~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
.+|..+|+| .+ +.+| .+++++++||++||+||++||++|+.++|.|.+++++|++. .+++||+|++|.
T Consensus 23 ~vG~~~P~f~~l~~~~g--~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~--------~~v~vv~v~~d~ 92 (165)
T 3s9f_A 23 GVAKHLGEALKLRKQAD--TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDS--------KNFEIILASWDE 92 (165)
T ss_dssp HHHHHHHHTSCEEETTE--EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCC
T ss_pred hhcccCCcceeeecCCC--cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccC--------CCeEEEEEecCC
Confidence 467888998 78 8888 69999999999999999999999999999999999999862 279999999999
Q ss_pred CHHHHHHHHhcCCCcccccCCchh-HHHHHhcCcCceeeEEEECCC-CcEEEcccchhh
Q 013684 289 DQTSFESYFGTMPWLALPFGDPTI-KELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNLI 345 (438)
Q Consensus 289 ~~~~~~~~~~~~~~~~~p~~~d~~-~~l~~~~~v~~~P~~~lid~~-G~i~~~~~~~~~ 345 (438)
+.+.+++++++++|..+|+..+.. ..+++.|+|.++|+++|||++ |+++++.+...+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~~~ 151 (165)
T 3s9f_A 93 EEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHAL 151 (165)
T ss_dssp SHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHH
T ss_pred CHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHHHH
Confidence 999999999999999999987654 899999999999999999998 999999765543
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-22 Score=173.97 Aligned_cols=139 Identities=14% Similarity=0.209 Sum_probs=118.0
Q ss_pred hhhhcCCCCCcc-C-CCCCceeeccccCCCEEEEEEecCCChhhhhh-hHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 210 NLLTNHDRGYLL-G-HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKF-MPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 210 ~~~g~~~~~f~l-~-~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
.+.|.++|+|.+ + .+|+ .+++++++||+++|+||++||++|+.+ +|.|.+++++|+++ ++.||+|++
T Consensus 3 ~~~g~~~p~~~~~~~~~g~-~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~---------~v~~v~v~~ 72 (160)
T 3lor_A 3 SLDNAPLLELDVQEWVNHE-GLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES---------QVQVIGLHS 72 (160)
T ss_dssp -CTTCCBCCCCEEEESSSC-CCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT---------TEEEEEEEC
T ss_pred ccCCCcCCCcccccccCCC-ccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcC---------CcEEEEEec
Confidence 456889999999 7 8999 999999999999999999999999995 99999999999865 799999998
Q ss_pred C------CCHHHHHHHHhcCCCcccccCCchhHH------HHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCC
Q 013684 287 D------RDQTSFESYFGTMPWLALPFGDPTIKE------LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYP 354 (438)
Q Consensus 287 d------~~~~~~~~~~~~~~~~~~p~~~d~~~~------l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~ 354 (438)
| .+.+.+++|+++++ +.+|+..|.... +.+.|+|.++|+++|||++|+++.+. .|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-------~g~---- 140 (160)
T 3lor_A 73 VFEHHDVMTPEALKVFIDEFG-IKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQ-------FGQ---- 140 (160)
T ss_dssp CCSCGGGSCHHHHHHHHHHTT-CCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEEE-------ESC----
T ss_pred cccccccCCHHHHHHHHHHcC-CCCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEEe-------cCc----
Confidence 4 57889999999988 678888887776 99999999999999999999999873 232
Q ss_pred CCHHHHHHHHHHHHHHhcc
Q 013684 355 FTEAKLEFLEKQMEEEAKN 373 (438)
Q Consensus 355 ~~~~~~~~L~~~i~~~~~~ 373 (438)
.+ .++|.+.|+++++.
T Consensus 141 ~~---~~~l~~~i~~ll~~ 156 (160)
T 3lor_A 141 VD---DFVLGLLLGSLLSE 156 (160)
T ss_dssp CC---HHHHHHHHHHHHTC
T ss_pred CC---HHHHHHHHHHHHhc
Confidence 22 24566667766654
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-23 Score=180.68 Aligned_cols=137 Identities=24% Similarity=0.266 Sum_probs=110.4
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+|| ++|||+|..++|.|.++++++++. ++++++||.| +
T Consensus 6 vG~~aPdF~l~~~~G~-~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~---------~~~~v~vs~d-~ 74 (157)
T 4g2e_A 6 IGELAPDFELPDTELK-KVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV---------NAVVLGISVD-P 74 (157)
T ss_dssp TTSBCCCCEEEBTTSC-EEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGC---------SSEEEEEESS-C
T ss_pred CCCCCcCeEeECCCCC-EEeHHHHCCCeEEEEecCCCCCCccccchhhccccccccccc---------CceEeeeccc-c
Confidence 6899999999 99999 99999999999999999 999999999999999999999865 8999999998 5
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhcCcC-----------ceeeEEEECCCCcEEEcccchhhhhccccCCCCCHH
Q 013684 290 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEA 358 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~ 358 (438)
.+..++|.++++ ++||++.|.+.++++.|||. ..|++||||++|+|+++.. |.. +..+.
T Consensus 75 ~~~~~~~~~~~~-~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~-------~~~--~~~~~ 144 (157)
T 4g2e_A 75 PFSNKAFKEHNK-LNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWV-------SDD--PTKEP 144 (157)
T ss_dssp HHHHHHHHHHTT-CCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEE-------ESS--TTCCC
T ss_pred hhHHHHHHHHcC-CcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEE-------CCC--CCCCC
Confidence 678889998888 78999999999999999983 4789999999999998742 211 12333
Q ss_pred HHHHHHHHHHH
Q 013684 359 KLEFLEKQMEE 369 (438)
Q Consensus 359 ~~~~L~~~i~~ 369 (438)
..+++.+.|+.
T Consensus 145 ~~~eil~~l~~ 155 (157)
T 4g2e_A 145 PYDEIEKVVKS 155 (157)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 45666666654
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-22 Score=172.47 Aligned_cols=137 Identities=13% Similarity=0.255 Sum_probs=115.4
Q ss_pred hhcCCCCCcc-C--CCCCceeeccccCCCEEEEEEecCCChhhhhh-hHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 212 LTNHDRGYLL-G--HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKF-MPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 212 ~g~~~~~f~l-~--~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.|..+|+|++ + .+|+ .+++++++||+++|+||++||++|+.+ +|.|.+++++|+++ ++.||+|++|
T Consensus 2 ~g~~aP~f~l~~~~~~g~-~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~---------~v~~v~v~~~ 71 (158)
T 3eyt_A 2 NAMKAPELQIQQWFNSAT-DLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED---------KVAVLGLHTV 71 (158)
T ss_dssp CCEECCCCCEEEEESCSS-CCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT---------TEEEEEEECC
T ss_pred CCCcCCCceehhhhcCCC-ccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcC---------CEEEEEEEec
Confidence 3678999999 7 3788 999999999999999999999999996 99999999999855 7999999984
Q ss_pred ------CCHHHHHHHHhcCCCcccccCCchhH-----HHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCC
Q 013684 288 ------RDQTSFESYFGTMPWLALPFGDPTIK-----ELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 356 (438)
Q Consensus 288 ------~~~~~~~~~~~~~~~~~~p~~~d~~~-----~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~ 356 (438)
.+.+.+++|+++++ +.+|+..|... .+.+.|++.++|+++|||++|+++.+. .|. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-------~g~----~~ 139 (158)
T 3eyt_A 72 FEHHEAMTPISLKAFLHEYR-IKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHH-------FGD----VS 139 (158)
T ss_dssp CSCGGGSCHHHHHHHHHHTT-CCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEEE-------ESC----CC
T ss_pred ccccccCCHHHHHHHHHHcC-CCceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEEE-------eCC----CC
Confidence 47889999999988 67888777666 799999999999999999999999874 231 22
Q ss_pred HHHHHHHHHHHHHHhcc
Q 013684 357 EAKLEFLEKQMEEEAKN 373 (438)
Q Consensus 357 ~~~~~~L~~~i~~~~~~ 373 (438)
. ++|.+.|+++++.
T Consensus 140 ~---~~l~~~i~~ll~~ 153 (158)
T 3eyt_A 140 E---LLLGAEIATLLGE 153 (158)
T ss_dssp H---HHHHHHHHHHHTS
T ss_pred H---HHHHHHHHHHhcc
Confidence 2 4566667766654
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-22 Score=169.17 Aligned_cols=119 Identities=19% Similarity=0.318 Sum_probs=109.5
Q ss_pred hhhcCCCCCcc-CCCCCceeecc--ccCCCEEEEEEecCCChhhhhhhHHHHHHHHHH-HhhhhhcCCCCCCEEEEEEec
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVS--SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKI-KQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~--~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~-~~~~~~~~~~~~~~~vv~is~ 286 (438)
.+|..+|+|.+ +.+|+ .++++ +++||+++|+||++||++|+.+.|.|.++++++ +++ ++.|++|++
T Consensus 6 ~~g~~~p~~~l~~~~g~-~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~---------~~~~v~v~~ 75 (148)
T 3fkf_A 6 TVGKSAPYFSLPNEKGE-KLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNK---------NFAMLGISL 75 (148)
T ss_dssp CTTSBCCCCCEEBTTSC-EECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCT---------TEEEEEEEC
T ss_pred cCCCcCCCeEeeCCCCC-EEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCC---------CeEEEEEEC
Confidence 36889999999 99999 99999 999999999999999999999999999999999 644 799999999
Q ss_pred CCCHHHHHHHHhcCCCcccccCCch---hHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 287 DRDQTSFESYFGTMPWLALPFGDPT---IKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~p~~~d~---~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
|.+.+.+++++++++ +.+|+..|. ...+++.|++.++|+++|+|++|+++.+.
T Consensus 76 d~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 131 (148)
T 3fkf_A 76 DIDREAWETAIKKDT-LSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARD 131 (148)
T ss_dssp CSCHHHHHHHHHHTT-CCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred CCCHHHHHHHHHHcC-CCceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEec
Confidence 999999999999888 577777765 77999999999999999999999999884
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=178.06 Aligned_cols=187 Identities=14% Similarity=0.176 Sum_probs=124.4
Q ss_pred cccCCCEEEEEEecc-CCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 67 SDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 67 ~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
...++++++++||++ ||++|+.+.|.|.++++. . .++.++.|+.|.... .+++
T Consensus 18 ~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~---~-~~v~~~~vd~~~~~~----------------------~~~~ 71 (226)
T 1a8l_A 18 SKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL---T-DKLSYEIVDFDTPEG----------------------KELA 71 (226)
T ss_dssp GGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT---C-TTEEEEEEETTSHHH----------------------HHHH
T ss_pred HhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh---C-CceEEEEEeCCCccc----------------------HHHH
Confidence 345567889999999 999999999999998754 2 248888887663212 7889
Q ss_pred hhcCcCccceEEEecCCCCCCCcc-cccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCCCccCCC
Q 013684 146 RKFDIEGIPCLVVLQPYDDKDDAT-LHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHP 224 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~~~~~G~v~-~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~f~l~~~ 224 (438)
+.|+|.++|+++++. +|... .+.. | .+...+....+....... + ... ..+
T Consensus 72 ~~~~v~~~Pt~~~~~----~g~~~~~~~~-------G---~~~~~~l~~~l~~~l~~~----------~-~~~----~l~ 122 (226)
T 1a8l_A 72 KRYRIDRAPATTITQ----DGKDFGVRYF-------G---LPAGHEFAAFLEDIVDVS----------R-EET----NLM 122 (226)
T ss_dssp HHTTCCSSSEEEEEE----TTBCCSEEEE-------S---CCCTTHHHHHHHHHHHHH----------H-TCC----CCC
T ss_pred HHcCCCcCceEEEEc----CCceeeEEEe-------c---cCcHHHHHHHHHHHHhhc----------C-CCC----CCC
Confidence 999999999999995 55322 1111 1 111111111111111100 0 000 111
Q ss_pred CCceee-ccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCc
Q 013684 225 PDEKVP-VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWL 303 (438)
Q Consensus 225 g~~~~~-l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~ 303 (438)
.. .+. +....+++++|.||++||++|+.+.|.+.+++++++++ ..+++.++.|+++..
T Consensus 123 ~~-~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~------~~~~v~~~~vd~~~~-------------- 181 (226)
T 1a8l_A 123 DE-TKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKA------GKGKILGDMVEAIEY-------------- 181 (226)
T ss_dssp HH-HHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHT------TCCCEEEEEEEGGGC--------------
T ss_pred HH-HHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccc------cCCcEEEEEEEcccC--------------
Confidence 21 111 12233556699999999999999999999999998731 012588888888754
Q ss_pred ccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 304 ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 304 ~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..+++.|+|.++||++++ ++|+.+.+
T Consensus 182 ---------~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 207 (226)
T 1a8l_A 182 ---------PEWADQYNVMAVPKIVIQ-VNGEDRVE 207 (226)
T ss_dssp ---------HHHHHHTTCCSSCEEEEE-ETTEEEEE
T ss_pred ---------HHHHHhCCCcccCeEEEE-eCCceeEE
Confidence 668899999999998888 78987765
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.87 E-value=9e-22 Score=168.26 Aligned_cols=138 Identities=33% Similarity=0.580 Sum_probs=121.3
Q ss_pred HhhccchhH-HHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWY-VQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f-~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|..+|+| + +.+.+| .+++++++||+++|+||++||++|+.++|.|.++++++++. .++++++|++|.
T Consensus 3 ~~g~~~p~~~~--------l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~vv~i~~d~ 72 (144)
T 1o73_A 3 GLAKYLPGATN--------LLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDE 72 (144)
T ss_dssp GGGGTSCTTCC--------BBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCS
T ss_pred chhhhCccceE--------eecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccC-CCEEEEEEeCCC
Confidence 478899997 8 899999 99999999999999999999999999999999999999843 259999999999
Q ss_pred CHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEec-CCCCCCCcccccchhHHhhhCC-CCccCC
Q 013684 117 DLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQ-PYDDKDDATLHDGVELIYKYGI-RAFPFT 188 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd-~~~~~G~v~~~~~~~~i~~~~~-~a~p~~ 188 (438)
+.+.+++++++++|..+++...+....+.+.|++.++|+++++| + +|+++.+.+.+.+..... ..|||.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~---~G~i~~~~~~~~~~~~~~~~~~~W~ 143 (144)
T 1o73_A 73 NESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINAD---TGAIIGTQARTRVIEDPDGANFPWP 143 (144)
T ss_dssp SHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETT---TCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred CHHHHHHHHHhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECC---CCeEEecchhhHHhhCCCccCCCCC
Confidence 99999999999999888886545557899999999999999999 9 999999998776665544 336653
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.6e-22 Score=169.07 Aligned_cols=139 Identities=33% Similarity=0.609 Sum_probs=121.0
Q ss_pred Hhhccchh-HHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQW-YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~-f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|..+|+ |+ +.+.+| .+++++++||+++|+||++||++|+.++|.|.++++++++. .++++++|++|.
T Consensus 3 ~~~~~~P~~f~--------l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~vv~v~~d~ 72 (146)
T 1o8x_A 3 GLDKYLPGIEK--------LRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES-KNFEVVFCTWDE 72 (146)
T ss_dssp CGGGTSTTCCE--------EEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCC
T ss_pred chHhhCCCceE--------EEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhc-CCeEEEEEeCCC
Confidence 46888999 89 899999 99999999999999999999999999999999999999853 259999999999
Q ss_pred CHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEec-CCCCCCCcccccchhHHhhhCC-CCccCCh
Q 013684 117 DLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQ-PYDDKDDATLHDGVELIYKYGI-RAFPFTK 189 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd-~~~~~G~v~~~~~~~~i~~~~~-~a~p~~~ 189 (438)
+.+.+++++++++|..+++...+....+++.|+|.++|++++|| + +|+++.+.+...+.+... ..++|..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~---~G~i~~~~~~~~~~~~~~~~~~~w~~ 144 (146)
T 1o8x_A 73 EEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDAD---SGDVVTTRARATLVKDPEGEQFPWKD 144 (146)
T ss_dssp SHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETT---TCCEEESCHHHHHTTCTTCTTTTCCC
T ss_pred CHHHHHHHHHHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECC---CCeEEEecchhHHhhCCccccCCCCC
Confidence 99999999999999888875445557899999999999999999 9 999999988776655443 3466643
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.5e-22 Score=172.05 Aligned_cols=138 Identities=14% Similarity=0.171 Sum_probs=120.8
Q ss_pred hhhcCCCCCc--c-CCCCCceeeccccCCCEEEEEEec-CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 211 LLTNHDRGYL--L-GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 211 ~~g~~~~~f~--l-~~~g~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
.+|..+|+|+ + +.+|+ .+++++++||+++|+||+ +||++|..++|.|.+++++|+++ +++||+|++
T Consensus 8 ~~G~~~P~f~~~l~~~~G~-~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~---------~~~vv~vs~ 77 (163)
T 3gkn_A 8 VLELPAATFDLPLSLSGGT-QTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKA---------GAKILGVSR 77 (163)
T ss_dssp CCCCCGGGGGCCEECSTTC-EECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHT---------TCEEEEEES
T ss_pred ccCCcCCCccccccCCCCC-EEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHC---------CCEEEEEeC
Confidence 4689999999 9 99999 999999999999999998 99999999999999999999976 799999999
Q ss_pred CCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCc------------eeeEEEECCCCcEEEcccchhhhhccccCCC
Q 013684 287 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG------------IPCLVIIGPEGKTVTKQGRNLINLYQENAYP 354 (438)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~------------~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~ 354 (438)
| +.+.+++|+++++ +.+|+..|....+.+.||+.. +|++||||++|+|++... + .
T Consensus 78 d-~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~-------~----~ 144 (163)
T 3gkn_A 78 D-SVKSHDNFCAKQG-FAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWR-------K----V 144 (163)
T ss_dssp S-CHHHHHHHHHHHC-CSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEEC-------S----C
T ss_pred C-CHHHHHHHHHHhC-CCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEEc-------C----C
Confidence 8 7888999999887 789999998899999999987 999999999999998741 1 1
Q ss_pred CCHHHHHHHHHHHHHHh
Q 013684 355 FTEAKLEFLEKQMEEEA 371 (438)
Q Consensus 355 ~~~~~~~~L~~~i~~~~ 371 (438)
.....++++.+.|+++.
T Consensus 145 ~~~~~~~~il~~l~~l~ 161 (163)
T 3gkn_A 145 KVAGHADAVLAALKAHA 161 (163)
T ss_dssp CSTTHHHHHHHHHHHHC
T ss_pred CcccCHHHHHHHHHHHh
Confidence 23455677777776654
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=167.57 Aligned_cols=124 Identities=40% Similarity=0.763 Sum_probs=112.6
Q ss_pred hhcCCCC-Ccc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRG-YLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~-f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
++..+|+ |++ +.+| .+++++++||+++|+||++||++|+.+.|.|.++++++++. .+++|++|++|.+
T Consensus 4 ~~~~~P~~f~l~~~~g--~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~--------~~~~vv~v~~d~~ 73 (146)
T 1o8x_A 4 LDKYLPGIEKLRRGDG--EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES--------KNFEVVFCTWDEE 73 (146)
T ss_dssp GGGTSTTCCEEEETTE--EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCCS
T ss_pred hHhhCCCceEEEcCCC--CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhc--------CCeEEEEEeCCCC
Confidence 5778999 899 8888 69999999999999999999999999999999999999842 2799999999999
Q ss_pred HHHHHHHHhcCCCcccccCC-chhHHHHHhcCcCceeeEEEEC-CCCcEEEcccchhh
Q 013684 290 QTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIG-PEGKTVTKQGRNLI 345 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~-d~~~~l~~~~~v~~~P~~~lid-~~G~i~~~~~~~~~ 345 (438)
.+.+++++++++|..+|+.. |....+++.|+|.++|+++|+| ++|+++++.+...+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~ 131 (146)
T 1o8x_A 74 EDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131 (146)
T ss_dssp HHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHH
T ss_pred HHHHHHHHHHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchhHH
Confidence 99999999999999999876 6678999999999999999999 99999999765554
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=165.69 Aligned_cols=125 Identities=44% Similarity=0.791 Sum_probs=112.5
Q ss_pred hhhcCCCCC-cc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 211 LLTNHDRGY-LL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 211 ~~g~~~~~f-~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
.+|..+|+| ++ +.+| .+++++++||+++|+||++||++|+.+.|.|.++++++++. .+++|++|++|.
T Consensus 3 ~~g~~~p~~~~l~~~~g--~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--------~~~~vv~i~~d~ 72 (144)
T 1o73_A 3 GLAKYLPGATNLLSKSG--EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA--------KNFEVVLISWDE 72 (144)
T ss_dssp GGGGTSCTTCCBBCTTS--CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCS
T ss_pred chhhhCccceEeecCCC--cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccC--------CCEEEEEEeCCC
Confidence 367889997 88 8888 59999999999999999999999999999999999999732 279999999999
Q ss_pred CHHHHHHHHhcCCCcccccCC-chhHHHHHhcCcCceeeEEEEC-CCCcEEEcccchhh
Q 013684 289 DQTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIG-PEGKTVTKQGRNLI 345 (438)
Q Consensus 289 ~~~~~~~~~~~~~~~~~p~~~-d~~~~l~~~~~v~~~P~~~lid-~~G~i~~~~~~~~~ 345 (438)
+.+.+++++++++|..+|+.. +....+.+.|+|.++|+++|+| ++|+++++.+...+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~ 131 (144)
T 1o73_A 73 NESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRV 131 (144)
T ss_dssp SHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHH
T ss_pred CHHHHHHHHHhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHH
Confidence 999999999999999999876 5678899999999999999999 89999999765544
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=169.27 Aligned_cols=119 Identities=25% Similarity=0.462 Sum_probs=110.6
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.+.|.|.++++++++. ++.|++|++|.+
T Consensus 3 ~~G~~~p~~~l~~~~g~-~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~v~v~~d~~ 72 (154)
T 3kcm_A 3 LEENPAPDFTLNTLNGE-VVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGK---------PFRMLCVSIDEG 72 (154)
T ss_dssp CTTSBCCCCEEECTTSC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTS---------SEEEEEEECCTT
T ss_pred CCCCCCCCeEEEcCCCC-EEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC---------CeEEEEEEcCCc
Confidence 46889999999 99999 99999999999999999999999999999999999999864 799999999987
Q ss_pred -HHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 290 -QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 -~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+.+++++++++ +.+|+..|....+.+.|++.++|+++|||++|+++.+.
T Consensus 73 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 123 (154)
T 3kcm_A 73 GKVAVEEFFRKTG-FTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKV 123 (154)
T ss_dssp HHHHHHHHHHHHC-CCCCEEECTTCHHHHHHTCCSBCEEEEECTTSBEEEEE
T ss_pred chHHHHHHHHHcC-CCeeEEecCchHHHHHhCCCCCCeEEEECCCCcEEEEE
Confidence 788999999887 67899889889999999999999999999999999873
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=167.94 Aligned_cols=138 Identities=18% Similarity=0.292 Sum_probs=116.5
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
.+|..+|+|.+ +.+|+ .+++++++||+++|+||++||++|+.+.|.|.+++++++++ ++.+++|++|.+
T Consensus 9 ~~g~~~p~~~l~~~~g~-~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~---------~v~~v~v~~d~~ 78 (165)
T 3or5_A 9 ARPTPAPSFSGVTVDGK-PFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASR---------GFTFVGIAVNEQ 78 (165)
T ss_dssp CCCCBCCCCEEECTTSC-EEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---------TEEEEEEECSCC
T ss_pred cCCCCCCCceeeCCCCC-EechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC---------CeEEEEEECCCC
Confidence 46889999999 99999 99999999999999999999999999999999999999865 799999999998
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhc------CcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHH
Q 013684 290 QTSFESYFGTMPWLALPFGDPTIKELTKYF------DVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFL 363 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~------~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L 363 (438)
.+.+++++++++ +.+|+..+.. .+.+.| ++.++|+++|||++|+++.+. .|. .+ .++|
T Consensus 79 ~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~-------~g~----~~---~~~l 142 (165)
T 3or5_A 79 LPNVKNYMKTQG-IIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGVI-------VGP----RS---KADF 142 (165)
T ss_dssp HHHHHHHHHHHT-CCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEE-------CSC----CC---HHHH
T ss_pred HHHHHHHHHHcC-CCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEEE-------cCC----CC---HHHH
Confidence 999999999887 6778777754 778888 899999999999999999873 221 22 3556
Q ss_pred HHHHHHHhccC
Q 013684 364 EKQMEEEAKNL 374 (438)
Q Consensus 364 ~~~i~~~~~~~ 374 (438)
.+.|+++++..
T Consensus 143 ~~~l~~~l~~~ 153 (165)
T 3or5_A 143 DRIVKMALGAK 153 (165)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHhhh
Confidence 66666666543
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=167.07 Aligned_cols=117 Identities=14% Similarity=0.183 Sum_probs=105.3
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
..|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|+++ +++|++|++|..
T Consensus 10 ~~g~~~p~f~l~~~~G~-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~---------~~~vv~i~~d~~ 79 (152)
T 2lrt_A 10 IKEASIIDIQLKDLKGN-TRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ---------GFEIYQISLDGD 79 (152)
T ss_dssp SCTTCSCCCCEEBTTSC-EECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---------TEEEEEEECSCC
T ss_pred ccCCCCCCeEEEcCCCC-EEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC---------CeEEEEEEccCC
Confidence 45788999999 99999 99999999999999999999999999999999999999876 799999999999
Q ss_pred HHHHHHHHhcCCCcccccCCchhHH---HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDPTIKE---LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~~~---l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+.++++..+. .+|+..|.... +.+.|++.++|+++|||++|+++.+.
T Consensus 80 ~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 130 (152)
T 2lrt_A 80 EHFWKTSADNL---PWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARG 130 (152)
T ss_dssp HHHHHHHHTTC---SSEEEECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEET
T ss_pred HHHHHHHHhCC---CceEEECCCCcchHHHHHcCcccCceEEEECCCCeEEEec
Confidence 88888888764 45666665554 99999999999999999999999884
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-22 Score=168.47 Aligned_cols=124 Identities=16% Similarity=0.178 Sum_probs=108.5
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHH---HHHHHhcCCCCEEEEEEe
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVD---VYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~iv~vs 113 (438)
..+|..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|.+ +++++++.+ +++++|+
T Consensus 5 ~~~G~~ap~f~--------l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~--~~vi~i~ 74 (142)
T 3eur_A 5 NRLGTKALNFT--------YTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKK--LKVLSIY 74 (142)
T ss_dssp TCTTSBCCCCE--------EEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTS--EEEEEEE
T ss_pred hcCCCccCCcE--------EEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCC--eEEEEEE
Confidence 45899999999 8999999999999999999999999999999999999999 999998865 9999999
Q ss_pred cCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 114 SDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.|.+.+.+++++++++.......|.+....+.+.|++.++|+++|||+ +|+++.+..
T Consensus 75 ~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 131 (142)
T 3eur_A 75 PDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDK---NKTVLLKDA 131 (142)
T ss_dssp CSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSCCTTCSEEEEECT---TCBEEEEEE
T ss_pred cCCCHHHHHHHHHhcccccccccCccchhhhhhhcCCCcCCeEEEECC---CCcEEecCC
Confidence 999999999999987643222224443346899999999999999999 999998754
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-23 Score=179.71 Aligned_cols=141 Identities=18% Similarity=0.270 Sum_probs=119.2
Q ss_pred hhcCCCCCcc-CCCCCceeecccc--CCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSL--VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~--~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
+|..+|+|++ +.+|+ .++++++ +||+++|+|| ++|||+|..++|.|.+++++|++. ++++++||.|
T Consensus 7 vG~~aPdF~l~~~~G~-~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~---------~v~vv~is~d 76 (164)
T 4gqc_A 7 LGEKAPDFTLPNQDFE-PVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA---------NAEVLAISVD 76 (164)
T ss_dssp TTSBCCCCEEEBTTSC-EEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGS---------SSEEEEEESS
T ss_pred CCCCCcCcEeECCCCC-EEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhcc---------CceEEEecCC
Confidence 6999999999 99999 9999998 8999999988 999999999999999999999876 8999999998
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcC----------ceeeEEEECCCCcEEEcccchhhhhccccCCCCCH
Q 013684 288 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ----------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE 357 (438)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~----------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~ 357 (438)
+.+..++|.++++ ++||++.|.+.++++.|||. ..|++||||++|+|++...... +...
T Consensus 77 -~~~~~~~~~~~~~-~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~---------~~~~ 145 (164)
T 4gqc_A 77 -SPWCLKKFKDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDN---------PLNE 145 (164)
T ss_dssp -CHHHHHHHHHHTT-CCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSC---------TTCC
T ss_pred -CHHHHHHHHHhcC-cccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCC---------CCCC
Confidence 6778889998887 78999999999999999983 4689999999999998742111 2333
Q ss_pred HHHHHHHHHHHHHhcc
Q 013684 358 AKLEFLEKQMEEEAKN 373 (438)
Q Consensus 358 ~~~~~L~~~i~~~~~~ 373 (438)
..++++.+++++++++
T Consensus 146 ~~~~eil~~l~~l~~e 161 (164)
T 4gqc_A 146 PDYDEVVREANKIAGE 161 (164)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcc
Confidence 3466777777766543
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-21 Score=166.30 Aligned_cols=142 Identities=21% Similarity=0.279 Sum_probs=119.9
Q ss_pred hhhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-
Q 013684 210 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 287 (438)
Q Consensus 210 ~~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d- 287 (438)
.++|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.+.|.|.+++++++++ ++.|++|+.+
T Consensus 2 ~~~G~~~p~~~l~~~~g~-~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~v~~~~ 71 (153)
T 2l5o_A 2 SLDSKTAPAFSLPDLHGK-TVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNK---------NFQVLAVAQPI 71 (153)
T ss_dssp --CCTTCCSCEEECTTSC-EEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGT---------TEEEEEEECTT
T ss_pred CCCCCCCCCcEeecCCCC-CccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC---------CeEEEEEecCC
Confidence 357889999999 99999 99999999999999999999999999999999999999865 7999999986
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHH
Q 013684 288 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQM 367 (438)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i 367 (438)
.+.+.+++++++++ +.+++..|....+.+.|++.++|+++|+|++|+++.+. .|. ...++|.+.|
T Consensus 72 ~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~~-------~g~-------~~~~~l~~~l 136 (153)
T 2l5o_A 72 DPIESVRQYVKDYG-LPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTY-------VGE-------PDFGKLYQEI 136 (153)
T ss_dssp SCHHHHHHHHHHTT-CCSEEEECSSCHHHHHHTCCSSSEEEEECSSSCCCEEE-------ESS-------CCHHHHHHHH
T ss_pred CCHHHHHHHHHHcC-CCceEEcCchHHHHHHcCCCccCeEEEECCCCcEEEEE-------cCC-------CCHHHHHHHH
Confidence 35678999999887 67888888888999999999999999999999998763 231 1235677777
Q ss_pred HHHhccCCC
Q 013684 368 EEEAKNLPR 376 (438)
Q Consensus 368 ~~~~~~~~~ 376 (438)
++++.....
T Consensus 137 ~~ll~~~~~ 145 (153)
T 2l5o_A 137 DTAWRNSDA 145 (153)
T ss_dssp HHHHHCCSS
T ss_pred HHHHHhhhh
Confidence 777665544
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-21 Score=170.63 Aligned_cols=147 Identities=10% Similarity=0.073 Sum_probs=119.7
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC--
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-- 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-- 287 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|+++ ++||+|++|
T Consensus 8 ~~g~~~p~f~l~~~~G~-~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~----------~~~v~v~~d~~ 76 (188)
T 2cvb_A 8 PLESPLIDAELPDPRGG-RYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK----------VAFVGINANDY 76 (188)
T ss_dssp CTTCBCCCCEEECTTSC-EEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT----------EEEEEEECCCT
T ss_pred CCCCCCCCceeecCCCC-EEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC----------eEEEEEEcCcc
Confidence 36889999999 99999 99999999999999999999999999999999999998742 899999996
Q ss_pred -----CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhh-hccccCCCCCHHHHH
Q 013684 288 -----RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLIN-LYQENAYPFTEAKLE 361 (438)
Q Consensus 288 -----~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~-~~g~~~~~~~~~~~~ 361 (438)
.+.+.+++|+++++ +.+|+..|....+.+.|++.++|+++|||++|++++++..+... ..| +.+ .+
T Consensus 77 ~~~~~d~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g----~~~---~~ 148 (188)
T 2cvb_A 77 EKYPEDAPEKMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPS----KVQ---SH 148 (188)
T ss_dssp TTCGGGSHHHHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSCTTCGG----GCC---CC
T ss_pred ccccccCHHHHHHHHHHhC-CCceEEECCcchHHHHcCCCCCCeEEEECCCCcEEEEEecCCcccccc----ccC---HH
Confidence 36678999999888 68899888889999999999999999999999999882211000 001 011 25
Q ss_pred HHHHHHHHHhccCCC
Q 013684 362 FLEKQMEEEAKNLPR 376 (438)
Q Consensus 362 ~L~~~i~~~~~~~~~ 376 (438)
+|.+.|++++++.+.
T Consensus 149 ~l~~~i~~ll~~~~~ 163 (188)
T 2cvb_A 149 DLEAAIEALLRGEEP 163 (188)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCC
Confidence 567777777765544
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=165.20 Aligned_cols=119 Identities=20% Similarity=0.385 Sum_probs=109.0
Q ss_pred hhcCCC-CCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDR-GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~-~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+| +|++ +.+|+ .+++++++||+++|+||++||++|+.+.|.|.+++++++++ ++.+++|++|.+
T Consensus 5 ~G~~~p~~f~l~~~~g~-~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---------~~~~v~v~~d~~ 74 (152)
T 2lja_A 5 SGNPSAASFSYPDINGK-TVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGK---------DIHFVSLSCDKN 74 (152)
T ss_dssp TTCCCSSSCEEEETTTE-EEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTS---------SEEEEEEECCSC
T ss_pred cCCCCCcccEeecCCCC-EeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccC---------CeEEEEEEccCc
Confidence 688999 9999 99999 99999999999999999999999999999999999998754 799999999998
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+.+++++++.++-.+++..|....+.+.|++.++|+++|+|++|+++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 125 (152)
T 2lja_A 75 KKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISAN 125 (152)
T ss_dssp HHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECTTSCEEESS
T ss_pred HHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCCCEEEEECCCCeEEEcc
Confidence 889999998877555667777778999999999999999999999999874
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=168.26 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=107.6
Q ss_pred hhcCCCCCcc-CC--CCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCE------EEE
Q 013684 212 LTNHDRGYLL-GH--PPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDF------EVV 282 (438)
Q Consensus 212 ~g~~~~~f~l-~~--~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~------~vv 282 (438)
.|..+|+|.+ +. +|+ .+++++++||++||+||++||++|+.++|.|.+++++|+++ ++ +|+
T Consensus 33 ~g~~~p~f~l~~~~~~g~-~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~~~~~v~~v 102 (183)
T 3lwa_A 33 DRQQLPDIGGDSLMEEGT-QINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAA---------GNGDTPGGTVL 102 (183)
T ss_dssp GCCCCCCCEEEBSSSTTC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHC---------C---CCSEEEE
T ss_pred cCCCCCceeccccccCCc-EecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhc---------CCCccCCcEEE
Confidence 4778999999 99 999 99999999999999999999999999999999999999875 56 999
Q ss_pred EEecCC-CHHHHHHHHhcCCCcccccCCchhHHHHHhc---CcCceeeEEEECCCCcEEEcc
Q 013684 283 FVSTDR-DQTSFESYFGTMPWLALPFGDPTIKELTKYF---DVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 283 ~is~d~-~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~---~v~~~P~~~lid~~G~i~~~~ 340 (438)
+|++|. +.+.+++|+++++ +.+|+..|....+.+.| ++.++|+++|||++|+++.+.
T Consensus 103 ~v~~d~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 163 (183)
T 3lwa_A 103 GINVRDYSRDIAQDFVTDNG-LDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVF 163 (183)
T ss_dssp EEECSCCCHHHHHHHHHHTT-CCSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEEE
T ss_pred EEECCCCCHHHHHHHHHHcC-CCccEEECCcchHHHHhccCCCCCCCeEEEECCCCcEEEEE
Confidence 999998 7899999999988 77888888888888887 489999999999999999874
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=162.89 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=97.9
Q ss_pred CCCCCccCCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 013684 215 HDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 294 (438)
Q Consensus 215 ~~~~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 294 (438)
++++|.+..+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|++. +++|++|++| +.+.++
T Consensus 4 pa~~~~~~~~G~-~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~---------~v~vv~v~~d-~~~~~~ 72 (151)
T 3raz_A 4 SADELAGWKDNT-PQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKG---------SVDMVGIALD-TSDNIG 72 (151)
T ss_dssp ---CEEETTTCC-EECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT---------TEEEEEEESS-CHHHHH
T ss_pred CcchhhcccCCC-EecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC---------CeEEEEEECC-ChHHHH
Confidence 344555468999 99999999999999999999999999999999999999654 7999999998 567899
Q ss_pred HHHhcCCCcccccCCc---hhHHHHHhcC--cCceeeEEEECCCCcEEEcc
Q 013684 295 SYFGTMPWLALPFGDP---TIKELTKYFD--VQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 295 ~~~~~~~~~~~p~~~d---~~~~l~~~~~--v~~~P~~~lid~~G~i~~~~ 340 (438)
+|+++++ +.+|+..+ ....+.+.|+ +.++|+++|||++|+++.+.
T Consensus 73 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 122 (151)
T 3raz_A 73 NFLKQTP-VSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTI 122 (151)
T ss_dssp HHHHHSC-CSSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEEC
T ss_pred HHHHHcC-CCCceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEEE
Confidence 9999887 67777543 4678999999 99999999999999999874
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=168.81 Aligned_cols=160 Identities=13% Similarity=0.147 Sum_probs=124.5
Q ss_pred hhhcCCCCCcc-CC-CC--CceeeccccCCCEEEEEEec-CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 211 LLTNHDRGYLL-GH-PP--DEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 211 ~~g~~~~~f~l-~~-~g--~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
.+|..+|+|++ +. +| + .+++++++||+++|+||+ +|||+|..++|.|++++++|+++ +++||+|+
T Consensus 2 ~~G~~aP~f~l~~~~~G~~~-~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~---------~v~vv~Is 71 (186)
T 1n8j_A 2 LINTKIKPFKNQAFKNGEFI-EVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL---------GVDVYSVS 71 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEE-EEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT---------TEEEEEEE
T ss_pred CCCCcCCCcEeecccCCcce-EEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHC---------CCEEEEEE
Confidence 36889999999 88 58 8 999999999999999995 99999999999999999999876 79999999
Q ss_pred cCCCHHHHHHHHhcCC---CcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcccchhhhhccccCCCCC
Q 013684 286 TDRDQTSFESYFGTMP---WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 356 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~~---~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~ 356 (438)
+| +.+..++|+++++ .+.||+..|....+.+.||+. .+|++||||++|+|+++.. |......
T Consensus 72 ~d-~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~-------~~~~~~~- 142 (186)
T 1n8j_A 72 TD-THFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEV-------TAEGIGR- 142 (186)
T ss_dssp SS-CHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE-------ECTTBCC-
T ss_pred CC-CHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEe-------cCCCCCC-
Confidence 98 5677888888872 378899889889999999997 4799999999999998742 2111111
Q ss_pred HHHHHHHHHHHHHHhccCCCcccccccccccccccccCCCCC
Q 013684 357 EAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGP 398 (438)
Q Consensus 357 ~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (438)
..+++.+.|+.+.. ...+++..++..|..|...
T Consensus 143 --~~~~l~~~l~~l~~-------~~~~p~~~~p~~w~~~~~~ 175 (186)
T 1n8j_A 143 --DASDLLRKIKAAQY-------VAAHPGEVCPAKWKEGEAT 175 (186)
T ss_dssp --CHHHHHHHHHHHHH-------HHHSTTCBBCTTCCTTSCC
T ss_pred --CHHHHHHHHHHHHH-------HhhcCCCccCCCCCCCCcc
Confidence 24555556655432 1223355667667665544
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-21 Score=167.24 Aligned_cols=116 Identities=16% Similarity=0.283 Sum_probs=107.6
Q ss_pred hhhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-
Q 013684 210 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 287 (438)
Q Consensus 210 ~~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d- 287 (438)
..+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++++ ++.|++|++|
T Consensus 11 ~~~g~~~p~~~l~~~~g~-~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-----------~v~vv~i~~d~ 78 (165)
T 3ha9_A 11 EEVLEREASFSLTTIDGE-VISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-----------EISVIAIDFWT 78 (165)
T ss_dssp HHHHHHHHCCCEEBTTSC-EECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-----------TEEEEEEECCS
T ss_pred ccccCcCCCCEeecCCCC-EeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-----------CcEEEEEEecc
Confidence 346888999999 99999 999999999999999999999999999999999999886 4899999999
Q ss_pred -----------------CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEE
Q 013684 288 -----------------RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 288 -----------------~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
.+.+.+++|++++++-.+|+..| ...+.+.|+|.++|+++|||++|+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~~~P~~~lid~~G~i~~ 145 (165)
T 3ha9_A 79 AEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVRSIDYIVIMDKSSNVLY 145 (165)
T ss_dssp HHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred cccccccccccccCCCCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCCCceEEEEEcCCCcEEE
Confidence 78899999999988448888888 889999999999999999999999998
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-21 Score=170.89 Aligned_cols=136 Identities=18% Similarity=0.126 Sum_probs=116.0
Q ss_pred hcCCCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH
Q 013684 213 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 290 (438)
Q Consensus 213 g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~ 290 (438)
|.++|+|++ +.+|+ .+++++++||+++|+|| ++||++|..++|.|.+++++|+++ +++||+|+.| +.
T Consensus 28 g~~aP~f~l~~~~G~-~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~---------~~~vv~Vs~D-~~ 96 (179)
T 3ixr_A 28 NHSLLNHPLMLSGST-CKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQI---------NATVLGVSRD-SV 96 (179)
T ss_dssp CHHHHHCCEEEGGGE-EECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTT---------TEEEEEEESC-CH
T ss_pred CCcCCCeeEECCCCC-EEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCC-CH
Confidence 334999999 99999 99999999999999999 999999999999999999999876 8999999998 56
Q ss_pred HHHHHHHhcCCCcccccCCchhHHHHHhcCcCc------------eeeEEEECCCCcEEEcccchhhhhccccCCCCCHH
Q 013684 291 TSFESYFGTMPWLALPFGDPTIKELTKYFDVQG------------IPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEA 358 (438)
Q Consensus 291 ~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~------------~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~ 358 (438)
+..++|+++++ +.||+..|....+++.|++.. +|++||||++|+|++... + .....
T Consensus 97 ~~~~~~~~~~~-~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~-------~----~~~~~ 164 (179)
T 3ixr_A 97 KSHDSFCAKQG-FTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWR-------Q----VKVPG 164 (179)
T ss_dssp HHHHHHHHHHT-CCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEEC-------S----CCSTT
T ss_pred HHHHHHHHHcC-CceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEc-------C----CCCCC
Confidence 77888988877 789999998899999999964 588999999999998741 1 12345
Q ss_pred HHHHHHHHHHHHh
Q 013684 359 KLEFLEKQMEEEA 371 (438)
Q Consensus 359 ~~~~L~~~i~~~~ 371 (438)
.++++.+.|+++.
T Consensus 165 ~~~~il~~l~~l~ 177 (179)
T 3ixr_A 165 HAEEVLNKLKAHA 177 (179)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 5677777777654
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-21 Score=162.93 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=104.1
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHH---HHHHHhcCCCCEEEEEEec
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVD---VYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~iv~vs~ 114 (438)
.+|.++|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|.+ +++++++.+ +++++|++
T Consensus 2 ~~G~~~p~f~--------l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~--~~~v~v~~ 71 (142)
T 3ewl_A 2 NAGMKAADFT--------YVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAIYP 71 (142)
T ss_dssp CTTSBCCCCE--------EECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTS--EEEEEEEC
T ss_pred CCCCcCCCCE--------EECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCC--eEEEEEEe
Confidence 3799999999 9999999999999999999999999999999999999998 999998865 99999999
Q ss_pred CCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 115 DEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 115 D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.+.+.++++.+++++......|........+.|++.++|+++|||+ +|+++.+
T Consensus 72 d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 125 (142)
T 3ewl_A 72 DENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDG---RKRVILK 125 (142)
T ss_dssp SSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSCCCSSSEEEEECT---TCBEEEC
T ss_pred cCCHHHHHHHHHHcCCCcceeeCCccchhhHHHcCCCCCCeEEEECC---CCCEEec
Confidence 99999999999987754333334442122245899999999999999 9999874
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=160.68 Aligned_cols=118 Identities=20% Similarity=0.393 Sum_probs=107.6
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 288 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~- 288 (438)
.+|..+|+|.+ +.+|+ .+++++ +||+++|+||++||++|+.+.|.|.++++++++. ++.+++|++|.
T Consensus 10 ~~g~~~p~~~l~~~~g~-~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~v~v~~d~~ 78 (145)
T 3erw_A 10 KQPAVPAVFLMKTIEGE-DISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSD---------SVKLVTVNLVNS 78 (145)
T ss_dssp --CCSCCEEEEECTTSC-EEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCS---------SEEEEEEECGGG
T ss_pred cCCCcCCCceeecCCCC-EEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCC---------CEEEEEEEccCC
Confidence 46889999999 99999 999999 9999999999999999999999999999998744 79999999985
Q ss_pred --CHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 289 --DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 --~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+.+.+++++++++ +.+|+..|....+.+.|++.++|+++|+|++|+++.+.
T Consensus 79 ~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 131 (145)
T 3erw_A 79 EQNQQVVEDFIKANK-LTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTK 131 (145)
T ss_dssp SSCHHHHHHHHHHTT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCCEEEEE
T ss_pred cCCHHHHHHHHHHcC-CceeEEEcCchhHHHhcCcCccCeEEEEcCCCcEEEEE
Confidence 7889999999887 78999888889999999999999999999999998863
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=166.36 Aligned_cols=119 Identities=21% Similarity=0.369 Sum_probs=108.0
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC-
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD- 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~- 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|++. +++|++|++|.+
T Consensus 36 ~g~~~p~f~l~~~~G~-~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~v~~d~~~ 105 (186)
T 1jfu_A 36 APLKLPDLAFEDADGK-PKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP---------NFEVVAINIDTRD 105 (186)
T ss_dssp SCCBCCCCEEECTTSC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT---------TEEEEEEECCCSC
T ss_pred CCCcCCCcEeEcCCCC-EeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccC---------CcEEEEEECCCCC
Confidence 5888999999 99999 99999999999999999999999999999999999999754 799999999864
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhcCcC----ceeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ----GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~----~~P~~~lid~~G~i~~~~ 340 (438)
.+.+++++++++.-.+|+..|....+.+.|++. ++|+++|||++|+++.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~ 160 (186)
T 1jfu_A 106 PEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATI 160 (186)
T ss_dssp TTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEEE
Confidence 578889999888556888888888999999986 999999999999999874
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-21 Score=165.06 Aligned_cols=121 Identities=12% Similarity=0.037 Sum_probs=100.2
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
.+|..+|+|+ + +.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++.+ +++++|++|.+
T Consensus 8 ~~G~~~P~f~--------l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~vv~vs~d~~ 76 (143)
T 4fo5_A 8 NPGDLAPRIE--------F-LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSISMDEK 76 (143)
T ss_dssp STTSBCCCCC--------C------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTT--EEEEEEECCSC
T ss_pred CCcccCCceE--------E-cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCC--EEEEEEEccCC
Confidence 4799999999 8 89999999999999999999999999999999999999999998765 99999999999
Q ss_pred HHHHHHhHhcCC--c-ccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 118 LNAFNNYRACMP--W-LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 118 ~~~~~~~~~~~~--~-~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.+.+++++++.+ | ..+.. .......+.+.|++.++|+++|||+ +|+++.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 131 (143)
T 4fo5_A 77 ESIFTETVKIDKLDLSTQFHE-GLGKESELYKKYDLRKGFKNFLIND---EGVIIAANV 131 (143)
T ss_dssp HHHHHHHHHHHTCCGGGEEEC-TTGGGSHHHHHTTGGGCCCEEEECT---TSBEEEESC
T ss_pred HHHHHHHHHHhCCCCceeeec-ccccchHHHHHcCCCCCCcEEEECC---CCEEEEccC
Confidence 999999998654 4 22222 2222368899999999999999999 999987754
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.7e-21 Score=164.98 Aligned_cols=137 Identities=12% Similarity=0.163 Sum_probs=116.8
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCC-EEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.+|..+|+|++ +.+|+ .+++++++|| +++|+|| ++||++|+.++|.|.+++++|+++ +++|++|++|
T Consensus 10 ~~G~~~p~f~l~~~~G~-~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~---------~~~vv~is~d 79 (160)
T 1xvw_A 10 NVGATAPDFTLRDQNQQ-LVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND---------DSAALAISVG 79 (160)
T ss_dssp CTTSBCCCCEEECTTSC-EEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS---------SEEEEEEESC
T ss_pred CCCCCCCCeEeEcCCCC-EEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---------CcEEEEEeCC
Confidence 46889999999 99999 9999999998 9999998 999999999999999999998754 7999999998
Q ss_pred CCHHHHHHHHhcCCCcccccCCch--hHHHHHhcCcC----cee--eEEEECCCCcEEEcccchhhhhccccCCCCCHHH
Q 013684 288 RDQTSFESYFGTMPWLALPFGDPT--IKELTKYFDVQ----GIP--CLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAK 359 (438)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~d~--~~~l~~~~~v~----~~P--~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~ 359 (438)
+.+.+++|+++++ +.+|+..|. ...+.+.|++. ++| +++|||++|+++++.. |. ...+..
T Consensus 80 -~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~-------g~---~~~~~~ 147 (160)
T 1xvw_A 80 -PPPTHKIWATQSG-FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEM-------KQ---PGEVRD 147 (160)
T ss_dssp -CHHHHHHHHHHHT-CCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEE-------CC---TTCCCC
T ss_pred -CHHHHHHHHHhcC-CCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEe-------cC---CCCCCC
Confidence 5678999999888 588888885 78999999998 999 9999999999998742 32 112335
Q ss_pred HHHHHHHHHH
Q 013684 360 LEFLEKQMEE 369 (438)
Q Consensus 360 ~~~L~~~i~~ 369 (438)
++++.+.|++
T Consensus 148 ~~~l~~~l~~ 157 (160)
T 1xvw_A 148 QRLWTDALAA 157 (160)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6667776654
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=165.98 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=104.4
Q ss_pred hhhhcCCCCCcc-CCCC--CceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 210 NLLTNHDRGYLL-GHPP--DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 210 ~~~g~~~~~f~l-~~~g--~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
..+|..+|+|++ +.+| + .+++++++||+++|+||++||++|+.++|.|.+++++ ++.|++|++
T Consensus 30 ~~~G~~~P~f~l~~~~g~~~-~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-------------~v~vv~vs~ 95 (176)
T 3kh7_A 30 ALIGKPFPAFDLPSVQDPAR-RLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ-------------GVVIYGINY 95 (176)
T ss_dssp TTTTSBCCCCEEEBSSCTTS-EEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-------------TCEEEEEEE
T ss_pred cccCCcCCCcEecccCCCCc-eecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC-------------CCEEEEEeC
Confidence 357999999999 9998 7 8999999999999999999999999999999988764 379999999
Q ss_pred CCCHHHHHHHHhcCCCcccc-cCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 287 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~p-~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
|.+.+.+++|+++++ +.++ +..|....+.+.|++.++|+++|||++|+++++.
T Consensus 96 ~d~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 149 (176)
T 3kh7_A 96 KDDNAAAIKWLNELH-NPYLLSISDADGTLGLDLGVYGAPETYLIDKQGIIRHKI 149 (176)
T ss_dssp SCCHHHHHHHHHHTT-CCCSEEEEETTCHHHHHHTCCSSCEEEEECTTCBEEEEE
T ss_pred CCCHHHHHHHHHHcC-CCCceEEECCcchHHHHcCCCCCCeEEEECCCCeEEEEE
Confidence 989999999999988 4454 4677888999999999999999999999999873
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=169.80 Aligned_cols=140 Identities=12% Similarity=0.158 Sum_probs=117.4
Q ss_pred hhcCCCCCcc-CCC-------------C--CceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCC
Q 013684 212 LTNHDRGYLL-GHP-------------P--DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGD 274 (438)
Q Consensus 212 ~g~~~~~f~l-~~~-------------g--~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~ 274 (438)
+|..+|+|++ +.+ | + .+++++++||+++|+|| ++||++|+.++|.|.+++++|+++
T Consensus 6 ~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~-~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~------ 78 (195)
T 2bmx_A 6 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFT-TITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR------ 78 (195)
T ss_dssp TTCBCCCCEEEEECSSCGGGSCCSSGGGGEE-EEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT------
T ss_pred CCCcCCCcCcccccccccccccccccCCCcc-EeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHC------
Confidence 6889999999 777 6 7 99999999999999999 999999999999999999999865
Q ss_pred CCCCEEEEEEecCCCHHHHHHHHhcCC---CcccccCCchhHHHHHhcCcC-----ceeeEEEECCCCcEEEcccchhhh
Q 013684 275 ALEDFEVVFVSTDRDQTSFESYFGTMP---WLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQGRNLIN 346 (438)
Q Consensus 275 ~~~~~~vv~is~d~~~~~~~~~~~~~~---~~~~p~~~d~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~ 346 (438)
+++||+|++|. .+..++|.++++ .+.+|+..|....+.+.|++. ++|+++|||++|+++++.
T Consensus 79 ---~v~vv~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~------ 148 (195)
T 2bmx_A 79 ---DAQILGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVS------ 148 (195)
T ss_dssp ---TEEEEEEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEE------
T ss_pred ---CCEEEEEECCC-HHHHHHHHHHhccccCCceeEEeCCchHHHHHhCCcccCCCccceEEEEcCCCeEEEEE------
Confidence 79999999985 678888888772 267888888889999999999 999999999999999874
Q ss_pred hccccCCCCCHHHHHHHHHHHHHHhc
Q 013684 347 LYQENAYPFTEAKLEFLEKQMEEEAK 372 (438)
Q Consensus 347 ~~g~~~~~~~~~~~~~L~~~i~~~~~ 372 (438)
.|..... ...++|.+.|+++..
T Consensus 149 -~g~~~~~---~~~~~l~~~l~~l~~ 170 (195)
T 2bmx_A 149 -ATAGSVG---RNVDEVLRVLDALQS 170 (195)
T ss_dssp -EECTTCC---CCHHHHHHHHHHHHC
T ss_pred -ecCCCCC---CCHHHHHHHHHHHhh
Confidence 2322111 134677777777655
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=168.23 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=107.3
Q ss_pred hhhcCCCCCcc-CC--CC--CceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 013684 211 LLTNHDRGYLL-GH--PP--DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284 (438)
Q Consensus 211 ~~g~~~~~f~l-~~--~g--~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~i 284 (438)
.+|..+|+|++ +. +| + .+++++++||+++|+|| ++||++|..++|.|.+++++|+++ +++||+|
T Consensus 7 ~~G~~aP~f~l~~~~~~g~~~-~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~---------~v~vi~I 76 (202)
T 1uul_A 7 EDLHPAPDFNETALMPNGTFK-KVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI---------GCEVLAC 76 (202)
T ss_dssp CTTSBCCCCEEEEECTTSCEE-EEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT---------TEEEEEE
T ss_pred cCCCcCCCcEeeeeecCCCcc-EEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEE
Confidence 36899999999 76 78 7 99999999999999999 999999999999999999999865 7999999
Q ss_pred ecCCCHHHHHHHHhcC----C--CcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 285 STDRDQTSFESYFGTM----P--WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 285 s~d~~~~~~~~~~~~~----~--~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
++| +.+..++|++++ + .+++|+..|...++.+.|++. ++|+++|||++|+++++.
T Consensus 77 s~D-~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~ 143 (202)
T 1uul_A 77 SMD-SEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQIT 143 (202)
T ss_dssp ESS-CHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred eCC-CHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEE
Confidence 998 556788888876 1 378999999889999999999 999999999999999884
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-20 Score=167.94 Aligned_cols=147 Identities=13% Similarity=0.165 Sum_probs=120.3
Q ss_pred hhcCCCCCcc--CCCCCceeeccccCCC-EEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-
Q 013684 212 LTNHDRGYLL--GHPPDEKVPVSSLVGK-TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 287 (438)
Q Consensus 212 ~g~~~~~f~l--~~~g~~~~~l~~~~gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d- 287 (438)
+|..+|+|++ +.+|+ .+++++++|| +++|+||++||++|+.++|.|.+++++|+++ +++|++|++|
T Consensus 20 ~g~~~p~f~l~~~~~G~-~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~v~vv~v~~d~ 89 (196)
T 2ywi_A 20 LGKQAPPFALTNVIDGN-VVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPK---------GVSFVAINSND 89 (196)
T ss_dssp TTCBCCCCEEEETTTCC-EEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGG---------TCEEEEEECSC
T ss_pred cCCcCCceeeeecCCCC-EEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhC---------CcEEEEEECCc
Confidence 5888999998 69999 9999999998 5999999999999999999999999999875 7999999997
Q ss_pred ------CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhh--hccccCCCCCHHH
Q 013684 288 ------RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLIN--LYQENAYPFTEAK 359 (438)
Q Consensus 288 ------~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~--~~g~~~~~~~~~~ 359 (438)
.+.+.+++|+++++ +.+|+..|....+.+.|++.++|+++|||++|+++++...+... ..| +.+
T Consensus 90 ~~~~~~d~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g----~~~--- 161 (196)
T 2ywi_A 90 AEQYPEDSPENMKKVAEELG-YPFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGI----PVT--- 161 (196)
T ss_dssp TTTCGGGSHHHHHHHHHHHT-CCSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCC----CCC---
T ss_pred cccccccCHHHHHHHHHHcC-CCceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEccccCcccccccC----ccC---
Confidence 46788999999887 68898888888999999999999999999999999874321100 011 112
Q ss_pred HHHHHHHHHHHhccCCC
Q 013684 360 LEFLEKQMEEEAKNLPR 376 (438)
Q Consensus 360 ~~~L~~~i~~~~~~~~~ 376 (438)
.++|.+.|++++++.+.
T Consensus 162 ~~~l~~~i~~ll~~~~~ 178 (196)
T 2ywi_A 162 GESIRAALDALLEGRPV 178 (196)
T ss_dssp CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 25666777776665443
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-20 Score=159.24 Aligned_cols=136 Identities=21% Similarity=0.289 Sum_probs=116.1
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec--C
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST--D 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~--d 287 (438)
.+|..+|+|.+ +.+|+ .+++++++ |+++|+||++||++|+.+.|.|.++++++ . +.+++|++ +
T Consensus 6 ~~g~~~p~f~l~~~~g~-~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~----------v~~v~v~~d~~ 71 (154)
T 3ia1_A 6 KPGEPLPDFLLLDPKGQ-PVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET--G----------VPFYVISREPR 71 (154)
T ss_dssp CSBEECCCCCEECTTSC-EECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH--C----------CCEEEEECCTT
T ss_pred CCCCcCCceEEECCCCC-EechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc--C----------CeEEEEeCCCc
Confidence 36889999999 99999 99999999 99999999999999999999999999998 3 68999999 5
Q ss_pred CCHHHHHHHHhcCCCcccccCCc---hhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHH
Q 013684 288 RDQTSFESYFGTMPWLALPFGDP---TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLE 364 (438)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~d---~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~ 364 (438)
.+.+.+++++++++ +.+|+..| ....+.+.|++.++|+++|||++|+++.+. .|. .+ .++|.
T Consensus 72 ~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-------~g~----~~---~~~l~ 136 (154)
T 3ia1_A 72 DTREVVLEYMKTYP-RFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALF-------AGR----AG---REALL 136 (154)
T ss_dssp CCHHHHHHHHTTCT-TEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEE-------ESB----CC---HHHHH
T ss_pred ccHHHHHHHHHHcC-CCcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEE-------cCC----CC---HHHHH
Confidence 67889999999998 68888777 889999999999999999999999999874 232 12 35677
Q ss_pred HHHHHHhccCC
Q 013684 365 KQMEEEAKNLP 375 (438)
Q Consensus 365 ~~i~~~~~~~~ 375 (438)
+.|+++....+
T Consensus 137 ~~l~~~~~~~~ 147 (154)
T 3ia1_A 137 DALLLAGADLE 147 (154)
T ss_dssp HHHHHTTCCC-
T ss_pred HHHHhccCccc
Confidence 77776655443
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=159.18 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=106.6
Q ss_pred hhcCCCCCcc---CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 212 LTNHDRGYLL---GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 212 ~g~~~~~f~l---~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
+|..+|+|.+ +.+|+ .+++++++||+++|+||++||++|+.+.|.|.+++++++++ +.+++|++|.
T Consensus 3 ~g~~~P~f~~~~~~~~g~-~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~----------~~~~~v~~~~ 71 (148)
T 2b5x_A 3 LRQPMPELTGEKAWLNGE-VTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ----------LNVVAVHMPR 71 (148)
T ss_dssp TTCBCCCCCCCSEEESCC-CCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------SEEEEEECCC
T ss_pred CCCCCCCCccccccccCc-ccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC----------cEEEEEEcCC
Confidence 5888999987 57899 99999999999999999999999999999999999998743 8999999875
Q ss_pred -----CHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 289 -----DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 -----~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+.+.+++++++++ +.+|+..|....+.+.|++.++|+++++|++|+++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 127 (148)
T 2b5x_A 72 SEDDLDPGKIKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQ 127 (148)
T ss_dssp STTTSSHHHHHHHHHHTT-CCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEE
T ss_pred CccccCHHHHHHHHHHcC-CCcceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEe
Confidence 6788999999988 68898888888999999999999999999999999863
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-20 Score=155.56 Aligned_cols=115 Identities=24% Similarity=0.409 Sum_probs=104.3
Q ss_pred CCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe-----cCC
Q 013684 215 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS-----TDR 288 (438)
Q Consensus 215 ~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is-----~d~ 288 (438)
++|+|.+ +.+|+ .+++++++||+++|+||++||++|+.+.|.+.++++++++ ++.+++|. .+.
T Consensus 1 ~~p~f~l~~~~g~-~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~v~i~~~~~~~~~ 69 (138)
T 4evm_A 1 EVADFELMGVDGK-TYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD----------DYVVLTVVSPGHKGEQ 69 (138)
T ss_dssp CCCCCEEEBTTSC-EEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT----------TEEEEEEECTTSTTCC
T ss_pred CCCcceeECCCCC-EEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC----------CcEEEEEEcCCCCchh
Confidence 4799999 99999 9999999999999999999999999999999999988543 58999994 456
Q ss_pred CHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 289 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+.+.++++++++++..+|+..|....+.+.|++.++|+++|+|++|+++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 121 (138)
T 4evm_A 70 SEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTH 121 (138)
T ss_dssp CHHHHHHHHTTCCCTTCCEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred hHHHHHHHHhhcCCCCeeEEECcchHHHHHcCcccCCeEEEECCCCcEEEee
Confidence 7889999999999769999999889999999999999999999999999874
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-20 Score=156.34 Aligned_cols=113 Identities=18% Similarity=0.248 Sum_probs=104.7
Q ss_pred hcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHH
Q 013684 213 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 291 (438)
Q Consensus 213 g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~ 291 (438)
|..+|+|.+ +.+|+ .+++++++||+++|+||++||++|+.+.|.|.+++++++ ++.+++|++|.+.+
T Consensus 2 ~~~~p~~~~~~~~g~-~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-----------~~~~~~v~~~~~~~ 69 (136)
T 1zzo_A 2 VPAQLQFSAKTLDGH-DFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-----------EVTFVGVAGLDQVP 69 (136)
T ss_dssp CCGGGCCEEEBTTSC-EEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSSCHH
T ss_pred CCCCCCcccccCCCC-EeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-----------CeEEEEEeCCCCHH
Confidence 456899999 99999 999999999999999999999999999999999998875 48999999999999
Q ss_pred HHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 292 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 292 ~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
.+++++++++.-.+|+..|....+.+.|++.++|+++++|++|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~ 115 (136)
T 1zzo_A 70 AMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD 115 (136)
T ss_dssp HHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEE
T ss_pred HHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCceEEEECCCCCEE
Confidence 9999999988448888888889999999999999999999999998
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.6e-20 Score=158.98 Aligned_cols=119 Identities=18% Similarity=0.370 Sum_probs=102.9
Q ss_pred CCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChh-hhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---C
Q 013684 215 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---D 289 (438)
Q Consensus 215 ~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~ 289 (438)
.+|+|++ +.+|+ .+++++++||+++|+||++||++ |+.++|.|.++++++++. ...++++||+|++|. +
T Consensus 2 ~ap~f~l~~~~G~-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~-----~~~~~~~vv~vs~d~~~d~ 75 (164)
T 2ggt_A 2 LGGPFSLTTHTGE-RKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSI-----TTLPDLTPLFISIDPERDT 75 (164)
T ss_dssp CCCCCEEEETTSC-EEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHS-----SSSCCEEEEEEESCTTTCC
T ss_pred CCCCeEEEeCCCC-EEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhc-----cCCCcEEEEEEEeCCCCCC
Confidence 4799999 99999 99999999999999999999998 999999999999999861 001379999999986 3
Q ss_pred HHHHHHHHhcCCCcccccC---CchhHHHHHhcCcCcee---------------eEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFG---DPTIKELTKYFDVQGIP---------------CLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~---~d~~~~l~~~~~v~~~P---------------~~~lid~~G~i~~~~ 340 (438)
.+.+++|+++++ +.+++. .|....+.+.||+..+| +++|||++|+++.+.
T Consensus 76 ~~~~~~~~~~~~-~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 143 (164)
T 2ggt_A 76 KEAIANYVKEFS-PKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYF 143 (164)
T ss_dssp HHHHHHHHHTTC-SSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHHcC-CCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEe
Confidence 678999999877 566665 45667899999999999 899999999999874
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=170.00 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=107.3
Q ss_pred hhhcCCCCCcc-CC--CC--Cceeecccc-CCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 013684 211 LLTNHDRGYLL-GH--PP--DEKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 283 (438)
Q Consensus 211 ~~g~~~~~f~l-~~--~g--~~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~ 283 (438)
.+|..+|+|++ +. +| + .++++++ +||++||+|| ++|||+|..++|.|.+++++|+++ +++||+
T Consensus 26 ~~G~~aP~F~l~~~~~~G~~~-~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~---------~v~vv~ 95 (221)
T 2c0d_A 26 LVTKKAYNFTAQGLNKNNEII-NVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENK---------NVELLG 95 (221)
T ss_dssp CTTSBCCCCEEEEECTTSCEE-EEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHT---------TEEEEE
T ss_pred CCCCCCCCeEEeccccCCCcc-EEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEE
Confidence 47899999999 87 89 8 9999999 9999999999 999999999999999999999876 799999
Q ss_pred EecCCCHHHHHHHHhcCC------CcccccCCchhHHHHHhcCc-----CceeeEEEECCCCcEEEcc
Q 013684 284 VSTDRDQTSFESYFGTMP------WLALPFGDPTIKELTKYFDV-----QGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 284 is~d~~~~~~~~~~~~~~------~~~~p~~~d~~~~l~~~~~v-----~~~P~~~lid~~G~i~~~~ 340 (438)
|++| +.+..++|++++. .+.||+..|....+++.||+ ..+|++||||++|+|+++.
T Consensus 96 Is~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~ 162 (221)
T 2c0d_A 96 ISVD-SVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQT 162 (221)
T ss_dssp EESS-CHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred EeCC-CHHHHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCcccCCCccceEEEECCCCeEEEEE
Confidence 9997 5567888888761 47889988988999999999 4799999999999999984
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-20 Score=167.07 Aligned_cols=139 Identities=15% Similarity=0.179 Sum_probs=117.3
Q ss_pred hhcCCCCCcc-CC--CC--Cceeecccc-CCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 013684 212 LTNHDRGYLL-GH--PP--DEKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284 (438)
Q Consensus 212 ~g~~~~~f~l-~~--~g--~~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~i 284 (438)
+|..+|+|++ +. +| + .++++++ +||+++|+|| ++||++|..++|.|.+++++|+++ +++||+|
T Consensus 2 ~G~~aP~f~l~~~~~~G~~~-~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~---------~v~vv~I 71 (192)
T 2h01_A 2 FQGQAPSFKAEAVFGDNTFG-EVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER---------NVELLGC 71 (192)
T ss_dssp CSSBCCCCEEEEECTTSCEE-EEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT---------TEEEEEE
T ss_pred CCCcCCCcEeEeeecCCcee-EEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEE
Confidence 5889999999 87 89 8 9999999 9999999999 999999999999999999999865 7999999
Q ss_pred ecCCCHHHHHHHHhcCC------CcccccCCchhHHHHHhcCcC-----ceeeEEEECCCCcEEEcccchhhhhccccCC
Q 013684 285 STDRDQTSFESYFGTMP------WLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQGRNLINLYQENAY 353 (438)
Q Consensus 285 s~d~~~~~~~~~~~~~~------~~~~p~~~d~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~ 353 (438)
++| +.+..++|.+.+. .+.+|+..|...++.+.||+. .+|+++|||++|+++++.. |...
T Consensus 72 s~d-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~~-------g~~~- 142 (192)
T 2h01_A 72 SVD-SKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLV-------NNLA- 142 (192)
T ss_dssp ESS-CHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEE-------GGGS-
T ss_pred EeC-CHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEEe-------CCCC-
Confidence 998 5678888888772 478899999889999999999 8999999999999998742 2111
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 013684 354 PFTEAKLEFLEKQMEEEA 371 (438)
Q Consensus 354 ~~~~~~~~~L~~~i~~~~ 371 (438)
.....+++.+.|+++.
T Consensus 143 --~~~~~~~l~~~l~~l~ 158 (192)
T 2h01_A 143 --LGRSVDEILRLIDALQ 158 (192)
T ss_dssp --SGGGHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHh
Confidence 2234566666666544
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-20 Score=172.00 Aligned_cols=119 Identities=8% Similarity=0.100 Sum_probs=100.1
Q ss_pred HhhccchhHHHHHhhcccccCC-CCC--EEeccc-cCCCEEEEEEe-ccCCccch-hhHHHHHHHHHHHhcCCCCE-EEE
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKE-IGE--EVKVSD-LEGKVTALYFS-ANWYPPCG-NFTGVLVDVYEELRNNGSDF-EVV 110 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~-~g~--~v~l~~-~~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~-~iv 110 (438)
.+|..+|+|+ +.+. +|+ .++|++ ++||+++|+|| ++|||+|+ .++|.|+++++++++.| + +|+
T Consensus 4 ~~G~~aP~f~--------l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~--~~~vv 73 (241)
T 1nm3_A 4 MEGKKVPQVT--------FRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYG--VDDIL 73 (241)
T ss_dssp CTTSBCCCCE--------EEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTT--CCEEE
T ss_pred cCCCCCCCeE--------EEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEE
Confidence 4799999999 8886 777 899999 89999999999 99999999 99999999999999876 9 999
Q ss_pred EEecCCCHHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcC-----------ccceEEEecCCCCCCCcccccc
Q 013684 111 FVSSDEDLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 111 ~vs~D~~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~-----------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+||.|. .+..++|.++.++..++ ..|.+ ..+++.|++. ..|+++|| + +|++++...
T Consensus 74 ~is~d~-~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~---~G~i~~~~~ 141 (241)
T 1nm3_A 74 VVSVND-TFVMNAWKEDEKSENISFIPDGN--GEFTEGMGMLVGKEDLGFGKRSWRYSMLV-K---NGVVEKMFI 141 (241)
T ss_dssp EEESSC-HHHHHHHHHHTTCTTSEEEECTT--SHHHHHTTCEEECTTTTCCEEECCEEEEE-E---TTEEEEEEE
T ss_pred EEEcCC-HHHHHHHHHhcCCCceEEEECCC--cHHHHHhCceeecccccCcccceeEEEEE-E---CCEEEEEEE
Confidence 999984 67788888877654223 23443 6889999986 45899999 9 999987754
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-20 Score=163.89 Aligned_cols=141 Identities=16% Similarity=0.258 Sum_probs=113.0
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCCh-hhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d- 287 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+||++||+ +|..++|.|.+++++|+++ +.+++||+|++|
T Consensus 8 ~~g~~~p~f~l~~~~G~-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~-------~~~~~vv~is~d~ 79 (174)
T 1xzo_A 8 PLNYEVEPFTFQNQDGK-NVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAE-------NIDVRIISFSVDP 79 (174)
T ss_dssp CCCEECCCCEEECTTSC-EEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHT-------TCCCEEEEEESCT
T ss_pred ccccccCCcEEEcCCCC-EEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhc-------CCcEEEEEEEeCC
Confidence 36889999999 99999 9999999999999999999999 9999999999999999876 235999999998
Q ss_pred --CCHHHHHHHHhcCCCccc---ccCCchhHHHHHhc----------------CcCceeeEEEECCCCcEEEcccchhhh
Q 013684 288 --RDQTSFESYFGTMPWLAL---PFGDPTIKELTKYF----------------DVQGIPCLVIIGPEGKTVTKQGRNLIN 346 (438)
Q Consensus 288 --~~~~~~~~~~~~~~~~~~---p~~~d~~~~l~~~~----------------~v~~~P~~~lid~~G~i~~~~~~~~~~ 346 (438)
.+.+.+++|+++++ +.+ ++..|.+..+.+.| ++..+|+++|||++|+++.+.
T Consensus 80 ~~d~~~~~~~~~~~~~-~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~------ 152 (174)
T 1xzo_A 80 ENDKPKQLKKFAANYP-LSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDY------ 152 (174)
T ss_dssp TTCCHHHHHHHHTTSC-CCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEE------
T ss_pred CCCCHHHHHHHHHHcC-CCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEE------
Confidence 46788999999887 556 66666555544443 567899999999999999874
Q ss_pred hccccCCCCCHHHHHHHHHHHHHHhc
Q 013684 347 LYQENAYPFTEAKLEFLEKQMEEEAK 372 (438)
Q Consensus 347 ~~g~~~~~~~~~~~~~L~~~i~~~~~ 372 (438)
.|... ...++|.+.|+++++
T Consensus 153 -~g~~~-----~~~~~l~~~l~~ll~ 172 (174)
T 1xzo_A 153 -NGVEN-----TPYDDIISDVKSAST 172 (174)
T ss_dssp -ESSSS-----CCHHHHHHHHHHHTC
T ss_pred -cCCCC-----CCHHHHHHHHHHHHh
Confidence 23211 123566666766654
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=168.82 Aligned_cols=138 Identities=13% Similarity=0.135 Sum_probs=107.9
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC---
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--- 287 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d--- 287 (438)
.+..+|+|++ +.+|+ .+++++++||++||+||++|||+|+.++|.|.+++++|+++ +++||+|++|
T Consensus 22 ~~~~~p~f~l~d~~G~-~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~---------~~~vi~is~d~~~ 91 (187)
T 3dwv_A 22 AASSIFDFEVLDADHK-PYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ---------GFTVLAFPSNQFG 91 (187)
T ss_dssp TCCSGGGSCCBBTTSC-BCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG---------TCEEEEEEBCCCS
T ss_pred CCCccCCeEEEcCCCC-EeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC---------CeEEEEEECcccC
Confidence 3668899999 99999 99999999999999999999999999999999999999876 7999999998
Q ss_pred ----CCHHHHHHHHhcCCCcccccCC--chhHH----HH--------HhcCcCcee---eEEEECCCCcEEEcccchhhh
Q 013684 288 ----RDQTSFESYFGTMPWLALPFGD--PTIKE----LT--------KYFDVQGIP---CLVIIGPEGKTVTKQGRNLIN 346 (438)
Q Consensus 288 ----~~~~~~~~~~~~~~~~~~p~~~--d~~~~----l~--------~~~~v~~~P---~~~lid~~G~i~~~~~~~~~~ 346 (438)
.+.+.+++|+++.-.+.+|+.. |.... +. ..|++..+| ++||||++|+++.+..
T Consensus 92 ~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~----- 166 (187)
T 3dwv_A 92 GQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFS----- 166 (187)
T ss_dssp SCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEEC-----
T ss_pred CCCCCCHHHHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEEC-----
Confidence 3567899999854237777764 22221 22 445777888 9999999999998742
Q ss_pred hccccCCCCCHHHHHHHHHHHHHHhcc
Q 013684 347 LYQENAYPFTEAKLEFLEKQMEEEAKN 373 (438)
Q Consensus 347 ~~g~~~~~~~~~~~~~L~~~i~~~~~~ 373 (438)
|. .++ ++|.+.|++++++
T Consensus 167 --g~----~~~---~~l~~~i~~lL~~ 184 (187)
T 3dwv_A 167 --PG----ASV---KDIEEKLIPLLGS 184 (187)
T ss_dssp --TT----CCH---HHHHHHHHHHC--
T ss_pred --CC----CCH---HHHHHHHHHHHhc
Confidence 21 122 4566667666553
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-20 Score=164.43 Aligned_cols=119 Identities=19% Similarity=0.252 Sum_probs=106.5
Q ss_pred hhcCCCCCcc-CCCCC---ceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 212 LTNHDRGYLL-GHPPD---EKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~---~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
+|..+|+|++ +.+|+ +.+++++++||+++|+|| ++||++|+.++|.|.+++++|+++ +++|++|++
T Consensus 3 ~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~---------~v~vv~vs~ 73 (187)
T 1we0_A 3 IGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL---------GVEVYSVST 73 (187)
T ss_dssp TTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT---------TEEEEEEES
T ss_pred CCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc---------CCEEEEEEC
Confidence 5889999999 77765 279999999999999999 999999999999999999999875 799999999
Q ss_pred CCCHHHHHHHHhcCC---CcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 287 DRDQTSFESYFGTMP---WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 287 d~~~~~~~~~~~~~~---~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
|. .+..++|.++++ .+.+|+..|....+++.|++. ++|+++|||++|+++++.
T Consensus 74 d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~ 135 (187)
T 1we0_A 74 DT-HFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIE 135 (187)
T ss_dssp SC-HHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred CC-HHHHHHHHHHhccccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEE
Confidence 85 677888888872 378888888889999999998 999999999999999884
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-20 Score=156.59 Aligned_cols=110 Identities=18% Similarity=0.257 Sum_probs=103.0
Q ss_pred CCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHH
Q 013684 215 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 293 (438)
Q Consensus 215 ~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~ 293 (438)
.+|+|++ +.+|+ .+++++++||+++|+||++||++|+.+.|.+.+++++++ ++.+++|++|.+.+.+
T Consensus 3 ~~p~~~l~~~~g~-~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-----------~~~~~~v~~~~~~~~~ 70 (136)
T 1lu4_A 3 ERLQFTATTLSGA-PFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-----------AVTFVGIATRADVGAM 70 (136)
T ss_dssp GGGCCEEEBTTSC-EEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSSCHHHH
T ss_pred CCCCeEeecCCCC-eecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-----------CcEEEEEEcCCCHHHH
Confidence 5789999 99999 999999999999999999999999999999999998875 4899999999889999
Q ss_pred HHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 294 ESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 294 ~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
++++++++ +.+|+..|....+.+.|++.++|+++++|++|+++
T Consensus 71 ~~~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~ 113 (136)
T 1lu4_A 71 QSFVSKYN-LNFTNLNDADGVIWARYNVPWQPAFVFYRADGTST 113 (136)
T ss_dssp HHHHHHHT-CCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEE
T ss_pred HHHHHHcC-CCceEEECCchhHHHhcCCCCCCEEEEECCCCcEE
Confidence 99999888 58888888889999999999999999999999998
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-20 Score=167.97 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=105.8
Q ss_pred hhhcCCCCCcc-CC---CCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 211 LLTNHDRGYLL-GH---PPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 211 ~~g~~~~~f~l-~~---~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
.+|..+|+|++ +. +|+ .+++++++||+++|+|| ++||++|..++|.|.+++++|+++ +++||+|+
T Consensus 20 ~~G~~aP~f~l~~~~~~~g~-~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~---------~v~vv~Is 89 (211)
T 2pn8_A 20 FQSMPAPYWEGTAVIDGEFK-ELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI---------NTEVVACS 89 (211)
T ss_dssp CSSCBCCCCEEEEEETTEEE-EEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT---------TEEEEEEE
T ss_pred CCCCcCCCeEeecccCCCCc-EEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEE
Confidence 46889999999 64 467 99999999999999999 999999999999999999999865 89999999
Q ss_pred cCCCHHHHHHHHhcC----C--CcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFGTM----P--WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~----~--~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
+| +.+..++|++.+ + .+.||+..|....+++.||+. .+|++||||++|+|++..
T Consensus 90 ~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~ 155 (211)
T 2pn8_A 90 VD-SQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQIT 155 (211)
T ss_dssp SS-CHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred CC-CHHHHHHHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEE
Confidence 98 566788888876 1 478999889889999999994 699999999999999874
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-20 Score=163.28 Aligned_cols=115 Identities=10% Similarity=0.068 Sum_probs=103.6
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEec-CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+||+ +||++|..++|.|++++++| + +++||+|+.| +
T Consensus 18 ~G~~~P~f~l~~~~G~-~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~---------~v~vv~is~d-~ 84 (163)
T 1psq_A 18 VGDKALDFSLTTTDLS-KKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--D---------NTVVLTVSMD-L 84 (163)
T ss_dssp TTSBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T---------TEEEEEEESS-C
T ss_pred CCCCCCCEEEEcCCCc-EeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--C---------CcEEEEEECC-C
Confidence 6889999999 99999 999999999999999995 99999999999999999888 3 6999999998 4
Q ss_pred HHHHHHHHhcCCCc-ccccCCc-hhHHHHHhcCcC----c--eeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWL-ALPFGDP-TIKELTKYFDVQ----G--IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~-~~p~~~d-~~~~l~~~~~v~----~--~P~~~lid~~G~i~~~~ 340 (438)
.+..++|.++++ + .+|+..| ....+.+.||+. + .|+++|||++|+|+++.
T Consensus 85 ~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~ 142 (163)
T 1psq_A 85 PFAQKRWCGAEG-LDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVE 142 (163)
T ss_dssp HHHHHHHHHHHT-CTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEE
T ss_pred HHHHHHHHHhcC-CCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEE
Confidence 677888888877 5 7898888 788999999997 4 49999999999999884
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=165.94 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=116.2
Q ss_pred cCCCEEEEEE----eccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHH
Q 013684 69 LEGKVTALYF----SANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 144 (438)
Q Consensus 69 ~~gk~vll~F----~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 144 (438)
.++.+++++| |++||++|+.+.|.+.++++++.+.+ ++.++.|+.|.. .++
T Consensus 19 ~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~-~v~~~~vd~~~~------------------------~~l 73 (229)
T 2ywm_A 19 FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQD-KIKLDIYSPFTH------------------------KEE 73 (229)
T ss_dssp CCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTT-TEEEEEECTTTC------------------------HHH
T ss_pred ccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCC-ceEEEEecCccc------------------------HHH
Confidence 4445666666 58999999999999999999886532 488877765543 789
Q ss_pred hhhcCcCccceEEEecCCCCCCCcccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCCCccCCC
Q 013684 145 NRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHP 224 (438)
Q Consensus 145 ~~~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~f~l~~~ 224 (438)
++.|+|+++||+++++ +|....+.. |. +...+....+...... +.... ..+
T Consensus 74 ~~~~~v~~~Ptl~~~~----~~~~~~~~~-------G~---~~~~~l~~~~~~~~~~-----------~~~~~----~l~ 124 (229)
T 2ywm_A 74 TEKYGVDRVPTIVIEG----DKDYGIRYI-------GL---PAGLEFTTLINGIFHV-----------SQRKP----QLS 124 (229)
T ss_dssp HHHTTCCBSSEEEEES----SSCCCEEEE-------SC---CCTTHHHHHHHHHHHH-----------HTTCC----SCC
T ss_pred HHHcCCCcCcEEEEEC----CCcccceec-------CC---ccHHHHHHHHHHHHhc-----------cCCcc----CCC
Confidence 9999999999999996 333222111 11 1111111111111100 00111 111
Q ss_pred CCceee-ccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCc
Q 013684 225 PDEKVP-VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWL 303 (438)
Q Consensus 225 g~~~~~-l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~ 303 (438)
.. .+. +....+++++++||++||++|+.+.|.+.++++++. ++.++.|+++..
T Consensus 125 ~~-~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~-----------~v~~~~vd~~~~-------------- 178 (229)
T 2ywm_A 125 EK-TLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND-----------YITSKVIDASEN-------------- 178 (229)
T ss_dssp HH-HHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT-----------TEEEEEEEGGGC--------------
T ss_pred HH-HHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC-----------CeEEEEEECCCC--------------
Confidence 11 111 112335567899999999999999999999988762 488888888754
Q ss_pred ccccCCchhHHHHHhcCcCceeeEEEECCCCcE
Q 013684 304 ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 304 ~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i 336 (438)
.++++.|+|.++||+++ +|++
T Consensus 179 ---------~~l~~~~~v~~~Pt~~~---~G~~ 199 (229)
T 2ywm_A 179 ---------QDLAEQFQVVGVPKIVI---NKGV 199 (229)
T ss_dssp ---------HHHHHHTTCCSSSEEEE---GGGT
T ss_pred ---------HHHHHHcCCcccCEEEE---CCEE
Confidence 67899999999999988 6774
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-20 Score=161.50 Aligned_cols=116 Identities=17% Similarity=0.347 Sum_probs=105.4
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
.+|..+|+|.+ +.+|+ .+++++++||+++|+||++||++|+.+.|.|.++++++++. ++.+++|++|.
T Consensus 16 ~~G~~~p~f~l~~~~g~-~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~v~v~~d~- 84 (158)
T 3hdc_A 16 RTGALAPNFKLPTLSGE-NKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKG---------DLVVLAVNVEK- 84 (158)
T ss_dssp CTTSBCCCCEEECTTSC-EEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTT---------SEEEEEEECSS-
T ss_pred CCCCcCCCceeEcCCCC-EEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccC---------CeEEEEEeCCH-
Confidence 36889999999 99999 99999999999999999999999999999999999999754 79999999986
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+++++++++ +.+|+..|....+.+.|++.++|+++|||++|+++.+.
T Consensus 85 --~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 132 (158)
T 3hdc_A 85 --RFPEKYRRAP-VSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRV 132 (158)
T ss_dssp --SCCGGGGGCC-CSCEEEECTTSHHHHHTTCCSSSEEEEECTTSBEEEEE
T ss_pred --HHHHHHHHcC-CCceEEECchHHHHHHhCCCCcceEEEEcCCCCEEEEE
Confidence 3566777776 67888888889999999999999999999999999874
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-20 Score=168.14 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=108.6
Q ss_pred hhhcCCCCCcc-CC--CC--Cceeecccc-CCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 013684 211 LLTNHDRGYLL-GH--PP--DEKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 283 (438)
Q Consensus 211 ~~g~~~~~f~l-~~--~g--~~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~ 283 (438)
.+|..+|+|++ +. +| + .++++++ +||+++|+|| ++||++|+.++|.|.+++++|+++ +++||+
T Consensus 22 ~~G~~aP~f~l~~~~~~G~~~-~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~---------~v~vv~ 91 (213)
T 2i81_A 22 YVGKEAPFFKAEAVFGDNSFG-EVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHER---------NVELLG 91 (213)
T ss_dssp CBTSBCCCCEEEEECTTSCEE-EEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHT---------TEEEEE
T ss_pred cCCCcCCCeEeeccccCCcee-EEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEE
Confidence 47899999999 87 89 8 9999999 9999999999 999999999999999999999865 799999
Q ss_pred EecCCCHHHHHHHHhcCC------CcccccCCchhHHHHHhcCcC-----ceeeEEEECCCCcEEEcc
Q 013684 284 VSTDRDQTSFESYFGTMP------WLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 284 is~d~~~~~~~~~~~~~~------~~~~p~~~d~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~~ 340 (438)
|++| +.+..++|++++. .+.||+..|...++++.||+. .+|++||||++|+|+++.
T Consensus 92 Is~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~ 158 (213)
T 2i81_A 92 CSVD-SKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLL 158 (213)
T ss_dssp EESS-CHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred EeCC-CHHHHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEEECCCCEEEEEE
Confidence 9998 5677888888761 478999999889999999999 999999999999999884
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-20 Score=202.98 Aligned_cols=175 Identities=15% Similarity=0.221 Sum_probs=123.7
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
.++.|++++|+|||+||++|+.+.|.|.++++++++ ++.++.|+.+.. ..+++
T Consensus 451 ~~~~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~---~v~~~~vd~~~~------------------------~~~~~ 503 (780)
T 3apo_A 451 PASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYG---QLKVGTLDCTIH------------------------EGLCN 503 (780)
T ss_dssp CTTCCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TCEEEEEETTTC------------------------HHHHH
T ss_pred HHcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CeEEEEEeCCCC------------------------HHHHH
Confidence 344789999999999999999999999999999864 388888876643 56889
Q ss_pred hcCcCccceEEEecCCCCCCCcccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCCCccCCCCC
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPD 226 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~f~l~~~g~ 226 (438)
.|+|.++|++++++ +|.+. ... |. .+.+.+..+...... |... ..+++
T Consensus 504 ~~~v~~~Pt~~~~~----~g~~~-~~~-------g~----~~~~~l~~fi~~~~~---------------~~v~-~l~~~ 551 (780)
T 3apo_A 504 MYNIQAYPTTVVFN----QSSIH-EYE-------GH----HSAEQILEFIEDLRN---------------PSVV-SLTPS 551 (780)
T ss_dssp HTTCCSSSEEEEEE----TTEEE-EEC-------SC----SCHHHHHHHHHHHHS---------------CSEE-ECCHH
T ss_pred HcCCCcCCeEEEEc----CCcee-eec-------Cc----ccHHHHHHHHHhhcc---------------ccee-ecCcc
Confidence 99999999999995 66542 110 11 222333322221111 1111 11111
Q ss_pred cee---eccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCc
Q 013684 227 EKV---PVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWL 303 (438)
Q Consensus 227 ~~~---~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~ 303 (438)
.+ -...-+++.++|.||++||++|+.+.|.+.++++.++++ +.++.|+++..
T Consensus 552 -~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~----------v~~~~vd~~~~-------------- 606 (780)
T 3apo_A 552 -TFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL----------INVGSVDCGQY-------------- 606 (780)
T ss_dssp -HHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------SEEEEEETTTT--------------
T ss_pred -cHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCC----------eEEEEEECcch--------------
Confidence 11 111122467999999999999999999999999999754 67777776643
Q ss_pred ccccCCchhHHHHHhcCcCceeeEEEECCCC
Q 013684 304 ALPFGDPTIKELTKYFDVQGIPCLVIIGPEG 334 (438)
Q Consensus 304 ~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G 334 (438)
..+++.|+|+++|+++++..++
T Consensus 607 ---------~~l~~~~~v~~~Pti~~~~~~~ 628 (780)
T 3apo_A 607 ---------HSFCTQENVQRYPEIRFYPQKS 628 (780)
T ss_dssp ---------HHHHHHTTCCSSSEEEEECCCS
T ss_pred ---------HHHHHHcCCCCCCeEEEEcCCC
Confidence 5688999999999999996544
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-20 Score=159.59 Aligned_cols=122 Identities=16% Similarity=0.240 Sum_probs=106.6
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEecc--ccCCCEEEEEEeccCCcc--chhhHHHHHHHHHHH-hcCCCCEEEEE
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVS--DLEGKVTALYFSANWYPP--CGNFTGVLVDVYEEL-RNNGSDFEVVF 111 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~--~~~gk~vll~F~a~wC~~--C~~~~p~l~~l~~~~-~~~~~~~~iv~ 111 (438)
+.+|.++|+|+ +.+.+|+.++++ +++||+++|+||++||++ |+.++|.|.++++++ ++.+ +++++
T Consensus 5 l~~G~~~p~f~--------l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~--~~~v~ 74 (150)
T 3fw2_A 5 SEIGKYAPFFS--------LPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKY--IGMLG 74 (150)
T ss_dssp TSTTSBCCCCC--------EEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSS--EEEEE
T ss_pred ccCCCcCCccE--------eECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCC--eEEEE
Confidence 35799999999 999999999999 999999999999999999 999999999999999 6654 99999
Q ss_pred EecCCCHHHHHHhHhcCC--cccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 112 VSSDEDLNAFNNYRACMP--WLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 112 vs~D~~~~~~~~~~~~~~--~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|++|.+.+.+++++++++ |..+... ......+.+.|++.++|+++|||+ +|+++.+.
T Consensus 75 v~~d~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~ 133 (150)
T 3fw2_A 75 ISLDVDKQQWKDAIKRDTLDWEQVCDF-GGLNSEVAKQYSIYKIPANILLSS---DGKILAKN 133 (150)
T ss_dssp EECCSCHHHHHHHHHHTTCCSEEECCS-CGGGCHHHHHTTCCSSSEEEEECT---TSBEEEES
T ss_pred EEcCCCHHHHHHHHHHhCCCceEEEcC-cccchHHHHHcCCCccCeEEEECC---CCEEEEcc
Confidence 999999999999998665 4443321 111268999999999999999999 99998775
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-20 Score=166.51 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=98.9
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 288 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~- 288 (438)
.+|..+|+|++ +.+|+ .+++++++||++||+||++|||+|+.++|.|.+++++|+++ +++||+|++|.
T Consensus 24 ~~g~~~p~f~l~~~~G~-~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~---------~v~vv~vs~d~~ 93 (181)
T 2p31_A 24 QQEQDFYDFKAVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPH---------HFNVLAFPCNQF 93 (181)
T ss_dssp ---CCGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCCS
T ss_pred CcCCccCceEeecCCCC-EecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcC---------CEEEEEEECcCC
Confidence 36889999999 99999 99999999999999999999999999999999999999876 79999999974
Q ss_pred ------CHHHHHHHHhc-CCCcccccCC--chhHHHHH---hcCcCcee-------eEEEECCCCcEEEcc
Q 013684 289 ------DQTSFESYFGT-MPWLALPFGD--PTIKELTK---YFDVQGIP-------CLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ------~~~~~~~~~~~-~~~~~~p~~~--d~~~~l~~---~~~v~~~P-------~~~lid~~G~i~~~~ 340 (438)
+.+.+++|+++ ++ +.+|+.. |.+..... .|++.++| ++||||++|+++.+.
T Consensus 94 ~~~e~~~~~~~~~~~~~~~~-~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~ 163 (181)
T 2p31_A 94 GQQEPDSNKEIESFARRTYS-VSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAW 163 (181)
T ss_dssp TTCCCSCHHHHHHHHHHHHC-CCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEE
T ss_pred CCCCCCCHHHHHHHHHhhcC-CCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEe
Confidence 67788999987 66 6788764 22222111 35678889 999999999999874
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-20 Score=170.10 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=105.7
Q ss_pred hhhhcCCCCCcc-CC-CC--CceeeccccCCCEEEEEEec-CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 013684 210 NLLTNHDRGYLL-GH-PP--DEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284 (438)
Q Consensus 210 ~~~g~~~~~f~l-~~-~g--~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~i 284 (438)
-.+|..+|+|++ +. +| + .+++++++||++||+||+ +||++|..++|.|++++++|+++ +++||+|
T Consensus 40 l~~G~~aP~f~l~~~~d~~G~-~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~---------~v~vv~I 109 (222)
T 3ztl_A 40 LLPNRPAPEFKGQAVINGEFK-EICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR---------NCQVIAC 109 (222)
T ss_dssp CCSSEECCCCEEEEEETTEEE-EEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTT---------TEEEEEE
T ss_pred ccCCCCCCCeEEecccCCCCc-EEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEE
Confidence 457999999999 65 55 8 999999999999999996 99999999999999999999865 7999999
Q ss_pred ecCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 285 STDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 285 s~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
++|. .+..+++.+.+ ..+.||+..|....+.+.|++. .+|++||||++|+|+++.
T Consensus 110 s~D~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~ 176 (222)
T 3ztl_A 110 STDS-QYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQIT 176 (222)
T ss_dssp ESSC-HHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEE
T ss_pred ECCC-HHHHHHHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEE
Confidence 9984 55566676654 2488999999889999999998 899999999999999884
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-20 Score=160.96 Aligned_cols=121 Identities=16% Similarity=0.270 Sum_probs=106.7
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCH
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 118 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~ 118 (438)
.|..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++.+ +++++|++|...
T Consensus 11 ~g~~~p~f~--------l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~vv~i~~d~~~ 80 (152)
T 2lrt_A 11 KEASIIDIQ--------LKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDE 80 (152)
T ss_dssp CTTCSCCCC--------EEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEECSCCH
T ss_pred cCCCCCCeE--------EEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCC--eEEEEEEccCCH
Confidence 578899999 8999999999999999999999999999999999999999999999875 999999999999
Q ss_pred HHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 119 NAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.++++...++|..+...+.. ...+.+.|++.++|+++|||+ +|+++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 131 (152)
T 2lrt_A 81 HFWKTSADNLPWVCVRDANGA-YSSYISLYNVTNLPSVFLVNR---NNELSARGE 131 (152)
T ss_dssp HHHHHHHTTCSSEEEECSSGG-GCHHHHHHTCCSCSEEEEEET---TTEEEEETT
T ss_pred HHHHHHHhCCCceEEECCCCc-chHHHHHcCcccCceEEEECC---CCeEEEecC
Confidence 889999888887765432221 135889999999999999999 999987654
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-20 Score=161.04 Aligned_cols=119 Identities=13% Similarity=0.214 Sum_probs=98.3
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC--
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-- 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-- 287 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|++++++|+++ +++||+|++|
T Consensus 7 ~~g~~~p~f~l~~~~g~-~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~vs~d~~ 76 (170)
T 2p5q_A 7 KNPESVHDFTVKDAKEN-DVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ---------GLEILAFPCNQF 76 (170)
T ss_dssp ---CCGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCTT
T ss_pred CCCccccceEEEcCCCC-EecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC---------CEEEEEEECCCC
Confidence 36888999999 99999 99999999999999999999999999999999999999876 7999999997
Q ss_pred -----CCHHHHHHHHh-cCCCcccccC--CchhHH----HH-----HhcCc--Ccee---eEEEECCCCcEEEcc
Q 013684 288 -----RDQTSFESYFG-TMPWLALPFG--DPTIKE----LT-----KYFDV--QGIP---CLVIIGPEGKTVTKQ 340 (438)
Q Consensus 288 -----~~~~~~~~~~~-~~~~~~~p~~--~d~~~~----l~-----~~~~v--~~~P---~~~lid~~G~i~~~~ 340 (438)
.+.+.+++|++ +++ +.+|+. .|.... +. +.+++ .++| +++|||++|+++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~ 150 (170)
T 2p5q_A 77 GEEEPGTNDQITDFVCTRFK-SEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRY 150 (170)
T ss_dssp TTCCCSCHHHHHHHHHHHTC-CCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEE
T ss_pred CCCCCCCHHHHHHHHHHhcC-CCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEee
Confidence 36778899988 555 677776 343322 22 23467 7888 999999999999874
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=166.25 Aligned_cols=141 Identities=16% Similarity=0.203 Sum_probs=116.0
Q ss_pred hhhcCCCCCcc-C---CCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 211 LLTNHDRGYLL-G---HPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 211 ~~g~~~~~f~l-~---~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
.+|..+|+|++ + .+|+ .+++++++||+++|+|| ++|||+|+.++|.|.+++++|+++ +++||+|+
T Consensus 28 ~~G~~aP~f~l~~~~~~~g~-~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~---------~v~vv~Is 97 (220)
T 1zye_A 28 AVTQHAPYFKGTAVVSGEFK-EISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV---------NCEVVAVS 97 (220)
T ss_dssp CTTSBCCCCEEEEECSSSEE-EEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT---------TEEEEEEE
T ss_pred cCCCCCCCcEEEeeeCCCCc-EEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEE
Confidence 47899999998 3 4678 99999999999999999 999999999999999999999876 79999999
Q ss_pred cCCCHHHHHHHHhcC----C--CcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcccchhhhhccccCC
Q 013684 286 TDRDQTSFESYFGTM----P--WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAY 353 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~----~--~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~ 353 (438)
+| +.+..++|++.+ + .+.||+..|...++.+.||+. ++|++||||++|+++++. .|....
T Consensus 98 ~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~-------~g~~~~ 169 (220)
T 1zye_A 98 VD-SHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLS-------VNDLPV 169 (220)
T ss_dssp SS-CHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE-------EECTTC
T ss_pred CC-CHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEE-------ecCCCC
Confidence 98 556778888765 1 378899999889999999999 999999999999999874 232111
Q ss_pred CCCHHHHHHHHHHHHHHhc
Q 013684 354 PFTEAKLEFLEKQMEEEAK 372 (438)
Q Consensus 354 ~~~~~~~~~L~~~i~~~~~ 372 (438)
....+++.+.|+++..
T Consensus 170 ---~~~~~ell~~l~~l~~ 185 (220)
T 1zye_A 170 ---GRSVEETLRLVKAFQF 185 (220)
T ss_dssp ---CCCHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHhhh
Confidence 1234566666665543
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.8e-20 Score=178.52 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=110.0
Q ss_pred hhhcCCCCCc-----c-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 013684 211 LLTNHDRGYL-----L-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284 (438)
Q Consensus 211 ~~g~~~~~f~-----l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~i 284 (438)
.+|..+|+|+ + +.+|+ .+++++++||++||+||++||++|+.++|.|.+++++|+++ +++||+|
T Consensus 52 ~vG~~aPdF~~~~~wL~d~dG~-~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~---------~v~vi~V 121 (352)
T 2hyx_A 52 ESCGTAPDLKGITGWLNTPGNK-PIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDS---------GLAVIGV 121 (352)
T ss_dssp CCCCBCCCCCSCCEEESSGGGC-CCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---------TEEEEEE
T ss_pred CCCCcCCCccccccccCCCCCC-EEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcC---------CeEEEEE
Confidence 4688999999 8 99999 99999999999999999999999999999999999999875 7999999
Q ss_pred ecC-----CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 285 STD-----RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 285 s~d-----~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
++| .+.+.+++++++++ +.+|+..|....+++.|+|.++|+++|||++|+++.+.
T Consensus 122 s~d~~~~~d~~~~~~~~~~~~~-l~fpv~~D~~~~l~~~ygV~~~Pt~~lID~~G~Iv~~~ 181 (352)
T 2hyx_A 122 HTPEYAFEKVPGNVAKGAANLG-ISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIK 181 (352)
T ss_dssp ECCSSGGGGCHHHHHHHHHHHT-CCSCEEECTTSHHHHHTTCCEESEEEEECTTSBEEEEE
T ss_pred ECCcccccCCHHHHHHHHHHcC-CCccEEeCCcHHHHHHcCCCccCEEEEEeCCCeEEEEE
Confidence 986 46788999999888 78999889889999999999999999999999999873
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-20 Score=163.28 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=105.5
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCC--EEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGK--TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk--~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
.+|..+|+|++ +.+|+ .+++++++|| +++|+|| ++|||+|..++|.|.+++++|+++ + +||+|++
T Consensus 8 ~~G~~~P~f~l~~~~G~-~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~-~vv~is~ 76 (159)
T 2a4v_A 8 EIGDPIPDLSLLNEDND-SISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY---------A-AVFGLSA 76 (159)
T ss_dssp CTTCBCCSCEEECTTSC-EEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT---------C-EEEEEES
T ss_pred CCCCCCCCeEEECCCCC-EEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhC---------C-cEEEEeC
Confidence 36889999999 99999 9999999987 8999997 899999999999999999999866 6 9999999
Q ss_pred CCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCcee------eEEEECCCCcEEEcc
Q 013684 287 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIP------CLVIIGPEGKTVTKQ 340 (438)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P------~~~lid~~G~i~~~~ 340 (438)
| +.+..++|+++++ +.+|+..|....+.+.||+..+| ++||| ++|+|+++.
T Consensus 77 d-~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~ 133 (159)
T 2a4v_A 77 D-SVTSQKKFQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKR 133 (159)
T ss_dssp C-CHHHHHHHHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEE
T ss_pred C-CHHHHHHHHHHhC-CCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEE
Confidence 8 5678889998887 68999889889999999999988 89999 999999874
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-21 Score=170.39 Aligned_cols=118 Identities=27% Similarity=0.409 Sum_probs=107.6
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHH-HHHHHH-hhhhhcCCCCCCEEEEEEecCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLS-IYQKIK-QNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~-l~~~~~-~~~~~~~~~~~~~~vv~is~d~ 288 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+ ++++++ +. ++.|++|++|.
T Consensus 9 ~g~~~p~f~l~~~~g~-~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~---------~~~vv~v~~d~ 78 (159)
T 2ls5_A 9 IGEMAPDFTITLTDGK-QVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNA---------DFALIGIDRDE 78 (159)
Confidence 5888999999 99999 999999999999999999999999999999998 998887 43 79999999998
Q ss_pred CHHHHHHHHhcCCCcccccCCchhHHHHHhcC--cCceeeEEEECCCCcEEEcc
Q 013684 289 DQTSFESYFGTMPWLALPFGDPTIKELTKYFD--VQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~--v~~~P~~~lid~~G~i~~~~ 340 (438)
+.+.+++|.++++ +.+|+..|....+.+.|+ +.++|+++|||++|+++.+.
T Consensus 79 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~ 131 (159)
T 2ls5_A 79 PLEKVLAFAKSTG-VTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKLT 131 (159)
Confidence 7778889988887 689999999999999999 56799999999999999874
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-20 Score=162.97 Aligned_cols=116 Identities=13% Similarity=0.172 Sum_probs=88.7
Q ss_pred hcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC----
Q 013684 213 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD---- 287 (438)
Q Consensus 213 g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d---- 287 (438)
+..+|+|++ +.+|+ .+++++++||+++|+||++||++|+ ++|.|.+++++|+++ +++||+|++|
T Consensus 9 ~~~~~~f~l~d~~G~-~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~---------~v~vv~vs~d~~~~ 77 (171)
T 3cmi_A 9 MSEFYKLAPVDKKGQ-PFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDE---------GFTIIGFPCNQFGH 77 (171)
T ss_dssp -CGGGGCCCBBTTSC-BCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGG---------TEEEEEEEECSCC-
T ss_pred hhheeeeEEEcCCCC-EecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccC---------CeEEEEEECcccCC
Confidence 567899999 99999 9999999999999999999999999 999999999999876 7999999986
Q ss_pred ---CCHHHHHHHH-hcCCCcccccCCchh--HH----H-----HHhcCcCcee------eEEEECCCCcEEEcc
Q 013684 288 ---RDQTSFESYF-GTMPWLALPFGDPTI--KE----L-----TKYFDVQGIP------CLVIIGPEGKTVTKQ 340 (438)
Q Consensus 288 ---~~~~~~~~~~-~~~~~~~~p~~~d~~--~~----l-----~~~~~v~~~P------~~~lid~~G~i~~~~ 340 (438)
.+.+.+++|+ ++++ +.+|+..|.+ .. + .+.|++.++| +++|||++|+++.+.
T Consensus 78 ~~~d~~~~~~~~~~~~~~-~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~ 150 (171)
T 3cmi_A 78 QEPGSDEEIAQFCQLNYG-VTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERY 150 (171)
T ss_dssp -----------------C-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEE
T ss_pred CCCCCHHHHHHHHHhccC-CCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEe
Confidence 3556788888 7666 6788765421 11 1 2468999999 999999999999874
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-20 Score=163.45 Aligned_cols=115 Identities=12% Similarity=0.079 Sum_probs=104.1
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+|| ++||++|..++|.|++++++ + +++||+|+.| +
T Consensus 22 ~G~~aP~f~l~~~~G~-~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~---------~~~vv~is~d-~ 87 (166)
T 3p7x_A 22 EGDFAPDFTVLDNDLN-QVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---E---------EGIVLTISAD-L 87 (166)
T ss_dssp TTSBCCCCEEECTTSC-EEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---T---------TSEEEEEESS-C
T ss_pred CCCCCCCeEEEcCCCC-EEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---C---------CCEEEEEECC-C
Confidence 6889999999 99999 99999999999999999 78999999999999999877 3 6899999998 5
Q ss_pred HHHHHHHHhcCCCcccccCCch-hHHHHHhcCcCc------eeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDPT-IKELTKYFDVQG------IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~-~~~l~~~~~v~~------~P~~~lid~~G~i~~~~ 340 (438)
.+.+++|+++++.-.||+..|. ...+.+.||+.. +|++||||++|+|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~ 145 (166)
T 3p7x_A 88 PFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKE 145 (166)
T ss_dssp HHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEE
T ss_pred HHHHHHHHHHcCCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 7788999998873279998888 889999999985 89999999999999874
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-20 Score=163.65 Aligned_cols=116 Identities=12% Similarity=0.130 Sum_probs=104.7
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCC-ChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+||++| |++|+.++|.|.+++++| . +++||+|++| +
T Consensus 20 ~G~~~p~f~l~~~~G~-~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~---------~~~vv~is~d-~ 86 (167)
T 2jsy_A 20 VGDQAPDFTVLTNSLE-EKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--G---------DVNVYTISAD-L 86 (167)
T ss_dssp TTSCCCCCEEEBTTCC-EEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--S---------SCEEEEEECS-S
T ss_pred CCCcCCceEEECCCCC-EeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--C---------CCEEEEEECC-C
Confidence 6889999999 99999 99999999999999999999 999999999999999999 3 5899999998 4
Q ss_pred HHHHHHHHhcCCCcccccCCc-hhHHHHHhcCcCc------eeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQG------IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d-~~~~l~~~~~v~~------~P~~~lid~~G~i~~~~ 340 (438)
.+.+++|.+++++..+|+..| ....+.+.|++.. +|+++|||++|+|+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~ 144 (167)
T 2jsy_A 87 PFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAE 144 (167)
T ss_dssp GGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEE
Confidence 566788888887438898888 7889999999987 49999999999999884
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-20 Score=159.55 Aligned_cols=121 Identities=19% Similarity=0.299 Sum_probs=105.8
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
.+|..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++.+ +++++|++|.+
T Consensus 4 ~~g~~~p~f~--------l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~ 73 (152)
T 2lrn_A 4 ATGSVAPAIT--------GIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGVSTDRR 73 (152)
T ss_dssp CTTEECCCCE--------EECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTT--EEEEEEECCSC
T ss_pred cCCCcCCCce--------eEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCC--eEEEEEEccCC
Confidence 4789999999 8999999999999999999999999999999999999999999998765 99999999999
Q ss_pred HHHHHHhHhcCC--cccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 118 LNAFNNYRACMP--WLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 118 ~~~~~~~~~~~~--~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.+.+.++.++.+ |..+.. .......+.+.|++.++|+++|||+ +|+++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~ 126 (152)
T 2lrn_A 74 EEDWKKAIEEDKSYWNQVLL-QKDDVKDVLESYCIVGFPHIILVDP---EGKIVAKE 126 (152)
T ss_dssp HHHHHHHHHHHTCCSEEEEE-CHHHHHHHHHHTTCCSSCEEEEECT---TSEEEEEC
T ss_pred HHHHHHHHHHhCCCCeEEec-ccchhHHHHHHhCCCcCCeEEEECC---CCeEEEee
Confidence 999999998654 443332 2222478999999999999999999 99998774
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-20 Score=163.94 Aligned_cols=118 Identities=13% Similarity=0.154 Sum_probs=100.6
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 288 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-- 288 (438)
.+..+|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|.+++++|+++ +++||+|++|.
T Consensus 24 ~~~~~p~f~l~~~~G~-~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~---------~v~vv~vs~d~~~ 93 (190)
T 2vup_A 24 AASSIFDFEVLDADHK-PYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ---------GFTVLAFPCNQFG 93 (190)
T ss_dssp CCCSGGGSCCBBTTSS-BCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TCEEEEEECCCST
T ss_pred CCCcccCeEEEcCCCC-EEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC---------CeEEEEEEcCccC
Confidence 4678899999 99999 99999999999999999999999999999999999999876 79999999983
Q ss_pred -----CHHHHHHHH-hcCCCcccccCC--chhHH----HH-----HhcCcCcee------eEEEECCCCcEEEcc
Q 013684 289 -----DQTSFESYF-GTMPWLALPFGD--PTIKE----LT-----KYFDVQGIP------CLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 -----~~~~~~~~~-~~~~~~~~p~~~--d~~~~----l~-----~~~~v~~~P------~~~lid~~G~i~~~~ 340 (438)
+.+.+++|+ ++++ +.+|+.. |.... +. +.|++.++| ++||||++|+++.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~ 167 (190)
T 2vup_A 94 GQEPGNEEEIKEFVCTKFK-AEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERF 167 (190)
T ss_dssp TCCCSCHHHHHHHHHHHHC-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEE
T ss_pred CCCCCCHHHHHHHHHHhcC-CCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEE
Confidence 677889998 6766 6777764 32222 22 347999999 999999999999874
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-21 Score=166.43 Aligned_cols=122 Identities=33% Similarity=0.689 Sum_probs=108.4
Q ss_pred CCCCCcc-CCCCCceeeccc-cCCC-EEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHH
Q 013684 215 HDRGYLL-GHPPDEKVPVSS-LVGK-TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 291 (438)
Q Consensus 215 ~~~~f~l-~~~g~~~~~l~~-~~gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~ 291 (438)
..|+|++ +.+|+ .+++++ ++|| +++|+||++||++|+.+.|.|.++++++++. +.++.+++|++|.+.+
T Consensus 3 ~~p~~~l~~~~g~-~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~-------~~~~~v~~v~~d~~~~ 74 (143)
T 2lus_A 3 FIQGIKLVKKNRC-EVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDD-------SAPFEIIFVSSDRSED 74 (143)
Confidence 4689999 99999 999999 9999 9999999999999999999999999999643 2479999999998888
Q ss_pred HHHHHHhcCC--CcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchh
Q 013684 292 SFESYFGTMP--WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNL 344 (438)
Q Consensus 292 ~~~~~~~~~~--~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 344 (438)
.+++++++++ |..+++..+....+++.|+|.++|+++|||++|+++++++...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 129 (143)
T 2lus_A 75 DMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGE 129 (143)
Confidence 8999998764 6677777787789999999999999999999999999876544
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-19 Score=155.83 Aligned_cols=117 Identities=17% Similarity=0.291 Sum_probs=100.7
Q ss_pred CCCcc-CCCCCceeeccccCCCEEEEEEecCCChh-hhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---CHH
Q 013684 217 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQT 291 (438)
Q Consensus 217 ~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~~~ 291 (438)
|+|++ +.+|+ .+++++++||+++|+||++||++ |+.++|.|.+++++|++. ...++++||+|++|. +.+
T Consensus 7 p~f~l~~~~G~-~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~-----~~~~~v~vv~is~d~~~d~~~ 80 (171)
T 2rli_A 7 GDFHLLDHRGR-ARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAE-----PGLPPVQPVFITVDPERDDVE 80 (171)
T ss_dssp SCCEEEETTSC-EEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHS-----TTSCCEEEEEEESCSTTCCHH
T ss_pred CCeEEEeCCCC-EEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhc-----cCCCceEEEEEEECCCCCCHH
Confidence 89999 99999 99999999999999999999998 999999999999999751 001379999999984 577
Q ss_pred HHHHHHhcCCCcccccCCc---hhHHHHHhcCcCcee---------------eEEEECCCCcEEEcc
Q 013684 292 SFESYFGTMPWLALPFGDP---TIKELTKYFDVQGIP---------------CLVIIGPEGKTVTKQ 340 (438)
Q Consensus 292 ~~~~~~~~~~~~~~p~~~d---~~~~l~~~~~v~~~P---------------~~~lid~~G~i~~~~ 340 (438)
.+++|+++++ +.++++.+ ....+++.||+..+| +++|||++|+++.+.
T Consensus 81 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 146 (171)
T 2rli_A 81 AMARYVQDFH-PRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYY 146 (171)
T ss_dssp HHHHHHHTTC-TTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEE
T ss_pred HHHHHHHHcC-CCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEE
Confidence 8999999877 56666543 446899999999998 999999999999874
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-18 Score=161.40 Aligned_cols=181 Identities=15% Similarity=0.148 Sum_probs=118.0
Q ss_pred CCEEEEEEeccC--CccchhhHHHHHHHHHHHhc-CCC-CEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 71 GKVTALYFSANW--YPPCGNFTGVLVDVYEELRN-NGS-DFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 71 gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~-~~~-~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
+++|+|.||++| |++|+.+.|.+.++++.... +|+ .+.++.++.|.. ..+++
T Consensus 25 ~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~------------------------~~~~~ 80 (243)
T 2hls_A 25 VNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESD------------------------SDKFS 80 (243)
T ss_dssp CSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTT------------------------HHHHH
T ss_pred CCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcC------------------------HHHHH
Confidence 468999999999 99999999999999887421 121 166666655533 67899
Q ss_pred hcCcCccceEEEecCCCCCCCcccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCCCccCCCCC
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPD 226 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~f~l~~~g~ 226 (438)
.|+|.++|++.+++ . ...+.++ + ..+.+..+...... . +...+ .+ +..
T Consensus 81 ~~gv~~~Pt~~i~~----g-~~~~~G~------------~-~~~~l~~fv~~~l~---------~-~~~~~--~l--~~~ 128 (243)
T 2hls_A 81 EFKVERVPTVAFLG----G-EVRWTGI------------P-AGEEIRALVEVIMR---------L-SEDES--GL--EDA 128 (243)
T ss_dssp HTTCCSSSEEEETT----T-TEEEESC------------C-CTTHHHHHHHHHHH---------H-HTTCC--CC--CHH
T ss_pred hcCCCcCCEEEEEC----C-ceeEcCC------------C-cHHHHHHHHHHHHh---------c-cCCCC--CC--CHH
Confidence 99999999999983 3 1111111 0 11112111111000 0 00000 11 000
Q ss_pred ceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccc
Q 013684 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALP 306 (438)
Q Consensus 227 ~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p 306 (438)
..-.+.++.|+++++.||++|||+|+.+.|.|.++++.++.. ..+++.+..|+++..
T Consensus 129 ~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~------~~~~v~~~~vd~~~~----------------- 185 (243)
T 2hls_A 129 TKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQ------GNPVILSEAVEAYEN----------------- 185 (243)
T ss_dssp HHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHT------TCCCEEEEEEETTTC-----------------
T ss_pred HHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccc------cCCcEEEEEEECccC-----------------
Confidence 001123456889999999999999999999999999998521 013688888887754
Q ss_pred cCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 307 FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 307 ~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.++++.|+|.++||+++ +|++++.
T Consensus 186 ------~~~~~~~~V~~vPt~~i---~G~~~~~ 209 (243)
T 2hls_A 186 ------PDIADKYGVMSVPSIAI---NGYLVFV 209 (243)
T ss_dssp ------HHHHHHTTCCSSSEEEE---TTEEEEE
T ss_pred ------HHHHHHcCCeeeCeEEE---CCEEEEe
Confidence 56788999999999988 7887644
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-20 Score=162.10 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=103.6
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+|| ++||++|..++|.|++++++| + +++||+|+.| +
T Consensus 19 ~G~~~P~f~l~~~~G~-~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~---------~v~vv~Is~d-~ 85 (165)
T 1q98_A 19 VGEIVENFILVGNDLA-DVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--S---------NTIVLCISAD-L 85 (165)
T ss_dssp TTCBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--T---------TEEEEEEESS-C
T ss_pred CCCCCCCeEEECCCCC-EEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--C---------CCEEEEEeCC-C
Confidence 6889999999 99999 99999999999999999 799999999999999999998 3 6999999998 5
Q ss_pred HHHHHHHHhcCCCc-ccccCCch-hHHHHHhcCcCc---------eeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWL-ALPFGDPT-IKELTKYFDVQG---------IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~-~~p~~~d~-~~~l~~~~~v~~---------~P~~~lid~~G~i~~~~ 340 (438)
.+.+++|+++++ + ++|+..|. ...+.+.||+.. +|++||||++|+|+++.
T Consensus 86 ~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~ 146 (165)
T 1q98_A 86 PFAQARFCGAEG-IENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQ 146 (165)
T ss_dssp HHHHTTCTTTTT-CTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHHcC-CCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEE
Confidence 677888888877 5 68988886 789999999964 59999999999999885
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9e-20 Score=162.41 Aligned_cols=122 Identities=14% Similarity=0.182 Sum_probs=99.4
Q ss_pred HHhhhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 208 LINLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 208 ~~~~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
..+..|...|+|++ +.+|+ .+++++++||++||+||++|||+|+.++|.|.+++++|+++ +++||+|++
T Consensus 10 ~~~~~~~~~p~f~l~d~~G~-~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~---------~~~vi~is~ 79 (180)
T 3kij_A 10 FLKPKINSFYAFEVKDAKGR-TVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPS---------HFSVLAFPC 79 (180)
T ss_dssp CCCCCCCCGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTT---------SEEEEEEEC
T ss_pred hhcCCcCcccceEEecCCCC-EecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccC---------CeEEEEEEC
Confidence 34556888999999 99999 99999999999999999999999999999999999999865 799999998
Q ss_pred CC-------CHHHHHHHHhc-CCCcccccCC-----chhH-HHHHhc--CcCceee----EEEECCCCcEEEcc
Q 013684 287 DR-------DQTSFESYFGT-MPWLALPFGD-----PTIK-ELTKYF--DVQGIPC----LVIIGPEGKTVTKQ 340 (438)
Q Consensus 287 d~-------~~~~~~~~~~~-~~~~~~p~~~-----d~~~-~l~~~~--~v~~~P~----~~lid~~G~i~~~~ 340 (438)
|. +.+.+++|+++ ++ +.+|+.. +... .+...+ .+.++|+ +||||++|+++.+.
T Consensus 80 d~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~ 152 (180)
T 3kij_A 80 NQFGESEPRPSKEVESFARKNYG-VTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFW 152 (180)
T ss_dssp CCSTTCCCSCHHHHHHHHHHHHC-CCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEE
T ss_pred CccccCCCCCHHHHHHHHHHhcC-CCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEE
Confidence 75 77889999988 66 6677632 1111 122211 1246888 99999999999874
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=156.56 Aligned_cols=115 Identities=20% Similarity=0.336 Sum_probs=102.6
Q ss_pred hhhcCCCCCcc-CCCC--------CceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEE
Q 013684 211 LLTNHDRGYLL-GHPP--------DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEV 281 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g--------~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~v 281 (438)
.+|..+|+|.+ +.+| + .+++++++||+++|+||++||++|+.+.|.|.+++++ + ++.+
T Consensus 9 ~~g~~~p~f~l~~~~g~~~~~~~~~-~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~----------~v~~ 75 (156)
T 1kng_A 9 LIGRPAPQTALPPLEGLQADNVQVP-GLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD--K----------RFQL 75 (156)
T ss_dssp ---CBCCCCCBCCCTTCEETTEECC-CBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC--T----------TSEE
T ss_pred HhCCCCCCceeeeccCcccccccCc-eechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc--C----------CeEE
Confidence 57889999999 9998 8 9999999999999999999999999999999988765 2 4899
Q ss_pred EEEecCCCHHHHHHHHhcCCCcccc-cCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 282 VFVSTDRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 282 v~is~d~~~~~~~~~~~~~~~~~~p-~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++|++|.+.+.+++++++++ +.+| +..|....+++.|++.++|+++++|++|+++.+
T Consensus 76 v~v~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~~~P~~~~id~~G~i~~~ 133 (156)
T 1kng_A 76 VGINYKDAADNARRFLGRYG-NPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYK 133 (156)
T ss_dssp EEEEESCCHHHHHHHHHHHC-CCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEE
T ss_pred EEEECCCCHHHHHHHHHHcC-CCCceeeeCchhHHHHhcCcCccCeEEEEcCCCCEEEE
Confidence 99999999999999999887 6677 667778899999999999999999999999986
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-19 Score=165.15 Aligned_cols=119 Identities=16% Similarity=0.189 Sum_probs=105.4
Q ss_pred hhhcCCCCCcc----CCCCCceeeccccCCCEEEEEEec-CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 211 LLTNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 211 ~~g~~~~~f~l----~~~g~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+||+ +||++|..++|.|.+++++|+++ +++||+|+
T Consensus 49 ~vG~~aPdF~l~~~~d~~G~-~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~---------gv~vv~Is 118 (240)
T 3qpm_A 49 KISKPAPQWEGTAVINGEFK-ELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAI---------NTEVVACS 118 (240)
T ss_dssp CTTSBCCCCEEEEEETTEEE-EEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTT---------TEEEEEEE
T ss_pred CCCCCCCCcEeeeeeCCCCc-EEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEE
Confidence 47999999996 44577 999999999999999998 99999999999999999999866 89999999
Q ss_pred cCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
+|. .+..++|++.. ..+.||+..|....+.+.||+. .+|++||||++|+|+++.
T Consensus 119 ~D~-~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~ 184 (240)
T 3qpm_A 119 VDS-QFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQIT 184 (240)
T ss_dssp SSC-HHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred CCC-HHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEE
Confidence 984 56677777765 2488999999899999999997 789999999999999874
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-20 Score=159.86 Aligned_cols=111 Identities=15% Similarity=0.266 Sum_probs=99.8
Q ss_pred cc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-----CCHHHH
Q 013684 220 LL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-----RDQTSF 293 (438)
Q Consensus 220 ~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-----~~~~~~ 293 (438)
++ +.+|+ .+++++++||+++|+||++||++|+.+.|.|.+++++|+.. +++||+|++| .+.+.+
T Consensus 22 ~l~~~~g~-~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~v~~~~~~~~~~~~~~ 91 (164)
T 2h30_A 22 TMKTADNR-PASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS---------SANLITVASPGFLHEKKDGEF 91 (164)
T ss_dssp TCEETTSS-BGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGT---------TSEEEEEECTTSTTCCCTTHH
T ss_pred ccCCCCCC-EeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC---------CcEEEEEEcCCCccccCHHHH
Confidence 66 99999 99999999999999999999999999999999999998765 7999999985 345688
Q ss_pred HHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 294 ESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 294 ~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++++.+++..+++..|....+++.|+|.++|+++|||++|+++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 138 (164)
T 2h30_A 92 QKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIV 138 (164)
T ss_dssp HHHHTTSCCTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEE
T ss_pred HHHHHhCCCCcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEE
Confidence 99998887555888888889999999999999999999999999873
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.80 E-value=8e-20 Score=160.01 Aligned_cols=117 Identities=16% Similarity=0.250 Sum_probs=105.8
Q ss_pred hhhcCCCCCcc---CCCC--Cceeeccc-cCCCEEEEEEe-cCCChhhh-hhhHHHHHHHHHHHhhhhhcCCCCCCEE-E
Q 013684 211 LLTNHDRGYLL---GHPP--DEKVPVSS-LVGKTVGLYFS-ARWCIPCE-KFMPKLLSIYQKIKQNLVEKGDALEDFE-V 281 (438)
Q Consensus 211 ~~g~~~~~f~l---~~~g--~~~~~l~~-~~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~~~~~~~~-v 281 (438)
.+|..+|+|++ +.+| + .+++++ ++||+++|+|| ++|||+|. .++|.|++++++|+++ +++ |
T Consensus 5 ~~G~~aP~f~l~~~~~~G~~~-~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~---------~v~~v 74 (162)
T 1tp9_A 5 AVGDVLPDGKLAYFDEQDQLQ-EVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK---------GVTEI 74 (162)
T ss_dssp CTTCBCCCCEEEEECTTSCEE-EEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT---------TCCCE
T ss_pred CCCCCCCCeEEEeecCCCCce-eEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCEE
Confidence 36889999986 7899 8 999999 99999999999 89999999 9999999999999876 799 9
Q ss_pred EEEecCCCHHHHHHHHhcCCCc--ccccCCchhHHHHHhcCcC------c-----eeeEEEECCCCcEEEcc
Q 013684 282 VFVSTDRDQTSFESYFGTMPWL--ALPFGDPTIKELTKYFDVQ------G-----IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 282 v~is~d~~~~~~~~~~~~~~~~--~~p~~~d~~~~l~~~~~v~------~-----~P~~~lid~~G~i~~~~ 340 (438)
++||.| +.+..++|.++++ + .||+..|.+.++++.||+. + +|++|||| +|+|++..
T Consensus 75 v~Is~d-~~~~~~~~~~~~~-~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~ 143 (162)
T 1tp9_A 75 LCISVN-DPFVMKAWAKSYP-ENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAAN 143 (162)
T ss_dssp EEEESS-CHHHHHHHHHTCT-TCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEE
T ss_pred EEEECC-CHHHHHHHHHhcC-CCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEE
Confidence 999998 5678899999888 5 6899999899999999996 2 89999999 99999874
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=159.11 Aligned_cols=119 Identities=9% Similarity=0.086 Sum_probs=97.3
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 288 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~- 288 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|++++++|+++ +++||+|++|.
T Consensus 6 ~~g~~~p~f~l~~~~G~-~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~v~~d~~ 75 (169)
T 2v1m_A 6 KSWNSIYEFTVKDINGV-DVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGK---------GLRILAFPCNQF 75 (169)
T ss_dssp -CCCSGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCCS
T ss_pred cCCcccccceeecCCCC-CccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcC---------CeEEEEEECCcc
Confidence 36888999999 99999 99999999999999999999999999999999999999876 79999999973
Q ss_pred ------CHHHHHHH-HhcCCCcccccCC--chhHH----HHH-----hcC-----cCceeeEEEECCCCcEEEcc
Q 013684 289 ------DQTSFESY-FGTMPWLALPFGD--PTIKE----LTK-----YFD-----VQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ------~~~~~~~~-~~~~~~~~~p~~~--d~~~~----l~~-----~~~-----v~~~P~~~lid~~G~i~~~~ 340 (438)
+.+.+++| .++++ +.+|+.. |.... +.+ .+| +..+|+++|||++|+++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 149 (169)
T 2v1m_A 76 GGQEPWAEAEIKKFVTEKYG-VQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRY 149 (169)
T ss_dssp TTCCCSCHHHHHHHHHHHHC-CCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEE
T ss_pred CCCCCCCHHHHHHHHHHhcC-CCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEc
Confidence 46788888 47666 5677663 32222 111 125 55679999999999999874
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.2e-20 Score=161.60 Aligned_cols=114 Identities=14% Similarity=0.141 Sum_probs=102.8
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+|| ++|||+|..++|.|++++++| + +++||+|++| +
T Consensus 23 ~g~~~P~f~l~~~~G~-~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~---------~v~vv~Is~d-~ 89 (171)
T 2yzh_A 23 VGDRAPEAVVVTKDLQ-EKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--E---------GVDVTVVSMD-L 89 (171)
T ss_dssp TTSBCCCEEEEETTSC-EEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T---------TEEEEEEESS-C
T ss_pred CCCcCCceEEECCCCC-EeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--C---------CceEEEEeCC-C
Confidence 5888999999 99999 99999999999999999 899999999999999999888 3 6999999998 5
Q ss_pred HHHHHHHHhcCCCc-ccccCCc-hhHHHHHhcCcCc---------eeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWL-ALPFGDP-TIKELTKYFDVQG---------IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~-~~p~~~d-~~~~l~~~~~v~~---------~P~~~lid~~G~i~~~~ 340 (438)
.+..++|.++++ + .+|+..| ....+ +.||+.. +|++||||++|+|+++.
T Consensus 90 ~~~~~~~~~~~~-~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~ 149 (171)
T 2yzh_A 90 PFAQKRFCESFN-IQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQ 149 (171)
T ss_dssp HHHHHHHHHHTT-CCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHHcC-CCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEE
Confidence 677888999887 5 7898888 77888 9999862 69999999999999885
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=163.19 Aligned_cols=118 Identities=11% Similarity=0.077 Sum_probs=95.6
Q ss_pred hhcCCCCCcc-CCC-CCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-
Q 013684 212 LTNHDRGYLL-GHP-PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 288 (438)
Q Consensus 212 ~g~~~~~f~l-~~~-g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~- 288 (438)
.+..+|+|++ +.+ |+ .+++++++||+|||+|||+|||+|+.++|.|++++++|+++ +++||+|++|.
T Consensus 22 ~~~~~p~f~l~~~~~G~-~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~---------g~~vv~v~~d~~ 91 (208)
T 2f8a_A 22 SMQSVYAFSARPLAGGE-PVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR---------GLVVLGFPCNQF 91 (208)
T ss_dssp CCCCGGGCEECBTTCSS-CEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCCS
T ss_pred hcCccCceEeeeCCCCC-CccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCC---------CeEEEEEECCcc
Confidence 3567899999 999 99 99999999999999999999999999999999999999876 79999999871
Q ss_pred ------CHHHHHHHHh------cCCCcccccCCch------h----HHHHHhc-------------------------Cc
Q 013684 289 ------DQTSFESYFG------TMPWLALPFGDPT------I----KELTKYF-------------------------DV 321 (438)
Q Consensus 289 ------~~~~~~~~~~------~~~~~~~p~~~d~------~----~~l~~~~-------------------------~v 321 (438)
+.+++++|++ +++ +.||+..+. . ..+...+ ++
T Consensus 92 ~~~e~d~~~~i~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 170 (208)
T 2f8a_A 92 GHQENAKNEEILNSLKYVRPGGGFE-PNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDV 170 (208)
T ss_dssp TTTTCSCHHHHHHHHHHTSSCTTCC-CSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCC
T ss_pred cccCCCCHHHHHHHHHhcccccccc-cceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCcc
Confidence 4577888887 555 677775321 1 1111122 36
Q ss_pred CceeeEEEECCCCcEEEcc
Q 013684 322 QGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 322 ~~~P~~~lid~~G~i~~~~ 340 (438)
...|++||||++|+|+.+.
T Consensus 171 ~~~p~tflID~~G~i~~~~ 189 (208)
T 2f8a_A 171 AWNFEKFLVGPDGVPLRRY 189 (208)
T ss_dssp CSTTCEEEECTTSCEEEEE
T ss_pred ccCceEEEEcCCCcEEEEe
Confidence 6679999999999999874
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=162.49 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=106.3
Q ss_pred hhcCCCCCcc-CC--CCC--ceeecccc-CCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 013684 212 LTNHDRGYLL-GH--PPD--EKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284 (438)
Q Consensus 212 ~g~~~~~f~l-~~--~g~--~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~i 284 (438)
+|..+|+|++ +. +|+ +.++++++ +||+++|+|| ++||++|+.++|.|.+++++|+++ +++||+|
T Consensus 3 ~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~---------~v~vv~I 73 (198)
T 1zof_A 3 VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK---------GFNVIGV 73 (198)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT---------TEEEEEE
T ss_pred CCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHc---------CCEEEEE
Confidence 6889999999 87 784 26999999 9999999999 999999999999999999999876 7999999
Q ss_pred ecCCCHHHHHHHHhc-------CCCcccccCCchhHHHHHhcCcC-----ceeeEEEECCCCcEEEcc
Q 013684 285 STDRDQTSFESYFGT-------MPWLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 285 s~d~~~~~~~~~~~~-------~~~~~~p~~~d~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~~ 340 (438)
++|. .+..++|.++ ++ +.+|+..|....+.+.|++. ++|+++|||++|+++.+.
T Consensus 74 s~d~-~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~ 139 (198)
T 1zof_A 74 SIDS-EQVHFAWKNTPVEKGGIGQ-VSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAV 139 (198)
T ss_dssp ESSC-HHHHHHHHTSCGGGTCCCC-CSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEE
T ss_pred ECCC-HHHHHHHHHhhhhcccccC-ceeEEEECCchHHHHHhCCcccCCcccceEEEECCCCEEEEEE
Confidence 9984 6788888887 44 78899888889999999999 999999999999999874
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.9e-20 Score=155.75 Aligned_cols=125 Identities=18% Similarity=0.259 Sum_probs=106.7
Q ss_pred HHHhhccchhHHHHHhhcccccCCCCCEEecc--ccCCCEEEEEEeccCCccchhhHHHHHHHHHHH-hcCCCCEEEEEE
Q 013684 36 RFLIMSLSQWYVQQLRRRMTSTKEIGEEVKVS--DLEGKVTALYFSANWYPPCGNFTGVLVDVYEEL-RNNGSDFEVVFV 112 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~--~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~-~~~~~~~~iv~v 112 (438)
.+.+|.++|+|+ +.+.+|+.++++ +++||+++|+||++||++|+.++|.|.++++++ ++.+ +.++.|
T Consensus 4 ~~~~g~~~p~~~--------l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~--~~~v~v 73 (148)
T 3fkf_A 4 KVTVGKSAPYFS--------LPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKN--FAMLGI 73 (148)
T ss_dssp -CCTTSBCCCCC--------EEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTT--EEEEEE
T ss_pred cccCCCcCCCeE--------eeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCC--eEEEEE
Confidence 345899999999 899999999999 999999999999999999999999999999999 6654 999999
Q ss_pred ecCCCHHHHHHhHhcCCcccccCCCh-HHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 113 SSDEDLNAFNNYRACMPWLAVPYSDL-ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 113 s~D~~~~~~~~~~~~~~~~~~~~~d~-~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++|.+.+.++++.+.+++....+.+. +....+++.|++.++|++++||+ +|+++.+..
T Consensus 74 ~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 132 (148)
T 3fkf_A 74 SLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSP---TGKILARDI 132 (148)
T ss_dssp ECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECT---TSBEEEESC
T ss_pred ECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCCcCEEEEECC---CCeEEEecC
Confidence 99999999999998765432222232 11368999999999999999999 999987653
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=158.62 Aligned_cols=120 Identities=21% Similarity=0.271 Sum_probs=105.7
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCE-EEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKV-TALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~-vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
.+|..+|+|+ +.+.+|+.+++++++||+ ++|+|| ++||++|+.++|.|.++++++++.| +++++|+.|
T Consensus 3 ~~G~~~P~f~--------l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~vs~d 72 (161)
T 3drn_A 3 KVGDKAPLFE--------GIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYD--VVVIGVSSD 72 (161)
T ss_dssp CTTSBCCCCE--------EEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTC--EEEEEEESC
T ss_pred CCCCcCCCeE--------eecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEeCC
Confidence 4799999999 999999999999999997 999999 9999999999999999999999876 999999998
Q ss_pred CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCc----cceEEEecCCCCCCCcccccc
Q 013684 116 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG----IPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~----~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+.++++.+++++....+.|.+ ..+.+.|++.+ +|+++|||+ +|+++....
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~~~~~P~~~lid~---~G~i~~~~~ 128 (161)
T 3drn_A 73 -DINSHKRFKEKYKLPFILVSDPD--KKIRELYGAKGFILPARITFVIDK---KGIIRHIYN 128 (161)
T ss_dssp -CHHHHHHHHHHTTCCSEEEECTT--SHHHHHTTCCCSSSCCCEEEEECT---TSBEEEEEE
T ss_pred -CHHHHHHHHHHhCCCceEEECCc--HHHHHHcCCCCcCcccceEEEECC---CCEEEEEEe
Confidence 57889999998765433333433 68899999999 999999999 999987654
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=161.77 Aligned_cols=119 Identities=9% Similarity=0.071 Sum_probs=99.9
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC--
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-- 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-- 287 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|+++ +++||+|++|
T Consensus 22 ~~g~~~p~f~l~~~~G~-~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~---------~v~vv~vs~d~~ 91 (183)
T 2obi_A 22 RCARSMHEFSAKDIDGH-MVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAEC---------GLRILAFPCNQF 91 (183)
T ss_dssp GGCCSGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCCS
T ss_pred cccCcccceEEEcCCCC-EeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcC---------CeEEEEEECCCC
Confidence 46889999999 99999 99999999999999999999999999999999999999876 7999999987
Q ss_pred -----CCHHHHHHHHhcCCCcccccCC--chhHH----HHHhc-------C-----cCceeeEEEECCCCcEEEcc
Q 013684 288 -----RDQTSFESYFGTMPWLALPFGD--PTIKE----LTKYF-------D-----VQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 288 -----~~~~~~~~~~~~~~~~~~p~~~--d~~~~----l~~~~-------~-----v~~~P~~~lid~~G~i~~~~ 340 (438)
.+.+.+++|+++++ +.+|+.. |.... +.+.+ + +..+|+++|||++|+++.+.
T Consensus 92 ~~~e~~~~~~~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~ 166 (183)
T 2obi_A 92 GKQEPGSNEEIKEFAAGYN-VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRY 166 (183)
T ss_dssp TTCCCSCHHHHHHHHHTTT-CCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEE
T ss_pred CCCCCCCHHHHHHHHHHcC-CCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEe
Confidence 36788999998887 6778764 32222 22222 4 44569999999999999874
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-20 Score=165.66 Aligned_cols=115 Identities=14% Similarity=0.187 Sum_probs=104.8
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+|| ++||++|..++|.|++++++| + +++||+|+.| +
T Consensus 54 ~G~~aPdf~l~d~~G~-~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~---------~v~vv~Is~D-~ 120 (200)
T 3zrd_A 54 IGDKAKDFTLVAKDLS-DVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--E---------NTVVLCISSD-L 120 (200)
T ss_dssp TTCBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--T---------TEEEEEEESS-C
T ss_pred CCCCCCCeEEECCCCC-EEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--C---------CCEEEEEECC-C
Confidence 5889999999 99999 99999999999999999 689999999999999999988 3 6999999998 5
Q ss_pred HHHHHHHHhcCCCc-ccccCCch-hHHHHHhcCcC---------ceeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWL-ALPFGDPT-IKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~-~~p~~~d~-~~~l~~~~~v~---------~~P~~~lid~~G~i~~~~ 340 (438)
.+.+++|+++++ + .||+..|. ...+.+.||+. .+|++||||++|+|+++.
T Consensus 121 ~~~~~~~~~~~~-~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~ 181 (200)
T 3zrd_A 121 PFAQSRFCGAEG-LSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSE 181 (200)
T ss_dssp HHHHTTCTTTTT-CTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHHcC-CCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEE
Confidence 678888888887 6 89999888 89999999996 369999999999999875
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-20 Score=158.19 Aligned_cols=123 Identities=18% Similarity=0.162 Sum_probs=106.0
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
.+|.++|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++.+ +.++.|++|.+
T Consensus 6 ~~G~~~p~~~--------l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~ 75 (148)
T 3hcz_A 6 LLGKKAPNLY--------MTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERK 75 (148)
T ss_dssp CTTSBCCCCC--------CBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGT--EEEEEEECCSS
T ss_pred CCCCcCCceE--------EecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC--EEEEEEEecCC
Confidence 4799999999 9999999999999999999999999999999999999999999998875 99999999988
Q ss_pred HHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 118 LNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 118 ~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.+.++++.+.+++...+ ..|......+.+.|++.++|+++|+|+ +|+++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~---~G~i~~~~~ 129 (148)
T 3hcz_A 76 DEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDK---NKVIIAKRI 129 (148)
T ss_dssp SHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECT---TCBEEEESC
T ss_pred HHHHHHHHHHcCCCCceEEeccccchhHHHhcCcCCCCEEEEECC---CCcEEEecC
Confidence 89999999977643121 223332123889999999999999999 999987643
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-19 Score=157.13 Aligned_cols=116 Identities=15% Similarity=0.162 Sum_probs=105.0
Q ss_pred hhcCCCCCcc--CCCCCceeecccc-CCCEEEEEEe-cCCChhhhh-hhHHHHHHHHHHHhhhhhcCCCCCCE-EEEEEe
Q 013684 212 LTNHDRGYLL--GHPPDEKVPVSSL-VGKTVGLYFS-ARWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDF-EVVFVS 285 (438)
Q Consensus 212 ~g~~~~~f~l--~~~g~~~~~l~~~-~gk~vll~F~-a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~~~~~~~-~vv~is 285 (438)
+|..+|+|++ +.+|+ .++++++ +||+++|+|| ++|||+|.. ++|.|++++++|+++ ++ +||+||
T Consensus 5 ~G~~aP~f~l~~~~~G~-~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~---------gv~~vv~Is 74 (167)
T 2wfc_A 5 EGDKLPAVTVFGATPND-KVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGK---------GVDIIACMA 74 (167)
T ss_dssp TTCBCCCCEEESSSTTC-EEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHT---------TCCEEEEEE
T ss_pred CCCcCCCcEeecCCCCc-EEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCEEEEEe
Confidence 6889999998 78899 9999998 9999999886 999999999 999999999999876 79 999999
Q ss_pred cCCCHHHHHHHHhcCCCcc--cccCCchhHHHHHhcCcCce-----------eeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFGTMPWLA--LPFGDPTIKELTKYFDVQGI-----------PCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~~~~~--~p~~~d~~~~l~~~~~v~~~-----------P~~~lid~~G~i~~~~ 340 (438)
.| +.+..++|.++++ +. ||++.|...++.+.||+... |++||| ++|+|++..
T Consensus 75 ~d-~~~~~~~~~~~~~-~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~ 139 (167)
T 2wfc_A 75 VN-DSFVMDAWGKAHG-ADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVN 139 (167)
T ss_dssp SS-CHHHHHHHHHHTT-CTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEE
T ss_pred CC-CHHHHHHHHHhcC-CCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEE
Confidence 98 5678899999887 56 99999999999999999754 999999 999999874
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-19 Score=159.86 Aligned_cols=118 Identities=8% Similarity=0.037 Sum_probs=98.2
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 288 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-- 288 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+||++|||+|+.++|.|++++++|+++ +++||+|++|.
T Consensus 25 ~g~~~p~f~l~~~~G~-~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~---------~v~vv~is~d~~~ 94 (185)
T 2gs3_A 25 CARSMHEFSAKDIDGH-MVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC---------GLRILAFPCNQFG 94 (185)
T ss_dssp GCCCGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCTTT
T ss_pred CCCCcCCceeEcCCCC-EeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcC---------CeEEEEEECcccC
Confidence 6888999999 99999 99999999999999999999999999999999999999876 79999999873
Q ss_pred -----CHHHHHHHHhcCCCcccccCC--chhH----HHHHhc-------Cc-----CceeeEEEECCCCcEEEcc
Q 013684 289 -----DQTSFESYFGTMPWLALPFGD--PTIK----ELTKYF-------DV-----QGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 -----~~~~~~~~~~~~~~~~~p~~~--d~~~----~l~~~~-------~v-----~~~P~~~lid~~G~i~~~~ 340 (438)
+.+.+++++++++ +.+|+.. |... .+.+.+ |+ ..+|++||||++|+++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~ 168 (185)
T 2gs3_A 95 KQEPGSNEEIKEFAAGYN-VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRY 168 (185)
T ss_dssp TCCCSCHHHHHHHHHHTT-CCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEE
T ss_pred CCCCCCHHHHHHHHHHcC-CCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEee
Confidence 4678899998877 6677764 3222 122222 43 3469999999999999874
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-19 Score=158.63 Aligned_cols=115 Identities=20% Similarity=0.185 Sum_probs=101.7
Q ss_pred hhhcCCCCCcc-CC--CCCceeecccc-CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 211 LLTNHDRGYLL-GH--PPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 211 ~~g~~~~~f~l-~~--~g~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
.+|..+|+|++ +. +|+ .+.++++ +||+++|+||++|||+|+.+.|.|.+++++ ++.|++|++
T Consensus 23 ~~G~~~P~f~l~~~~~~g~-~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-------------~v~vv~v~~ 88 (168)
T 2b1k_A 23 LIGKPVPKFRLESLDNPGQ-FYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-------------GIRVVGMNY 88 (168)
T ss_dssp TTTSBCCCCEEEESSSTTC-EEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-------------TCCEEEEEE
T ss_pred ccCCcCCCeEeecccCCCc-EeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-------------CCEEEEEEC
Confidence 47999999999 88 899 9998885 899999999999999999999999888764 378999999
Q ss_pred CCCHHHHHHHHhcCCCcccc-cCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 287 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~p-~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
|.+.+.+++|+++++ +.+| +..|....+++.|+|.++|++++||++|+++.+.
T Consensus 89 ~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 142 (168)
T 2b1k_A 89 KDDRQKAISWLKELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 142 (168)
T ss_dssp SCCHHHHHHHHHHHC-CCCSEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEEE
T ss_pred CCChHHHHHHHHHcC-CCCceeeECcchHHHHHcCccccCEEEEECCCCeEEEEE
Confidence 989999999999877 5566 4567778899999999999999999999999773
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.1e-19 Score=156.17 Aligned_cols=139 Identities=16% Similarity=0.164 Sum_probs=110.7
Q ss_pred hhcCCC-CCcc-CCCCCceeeccccCCCEEEEEEecCCCh-hhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-
Q 013684 212 LTNHDR-GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 287 (438)
Q Consensus 212 ~g~~~~-~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d- 287 (438)
+|..+| +|++ +.+|+ .+++++++||+++|+||++||+ +|..+++.|.+++++++.. +.+++||+|++|
T Consensus 3 ~G~~~P~~f~l~d~~G~-~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~-------~~~~~vv~is~d~ 74 (170)
T 3me7_A 3 LGTYVPGDITLVDSYGN-EFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTP-------GKDFWVITFTFDP 74 (170)
T ss_dssp TTCBCCTTCEEEETTCC-EEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCB-------TTTBEEEEEECCT
T ss_pred CCCcCCCCeEEEcCCcC-EEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhc-------CCceEEEEEECCC
Confidence 688999 9999 99999 9999999999999999999998 6999999999999999753 347999999998
Q ss_pred -CCHHHHHHHHhcCCCcccc---c----CCchhHHHHHhcCc---------CceeeEEEECCCCcEEEcccchhhhhccc
Q 013684 288 -RDQTSFESYFGTMPWLALP---F----GDPTIKELTKYFDV---------QGIPCLVIIGPEGKTVTKQGRNLINLYQE 350 (438)
Q Consensus 288 -~~~~~~~~~~~~~~~~~~p---~----~~d~~~~l~~~~~v---------~~~P~~~lid~~G~i~~~~~~~~~~~~g~ 350 (438)
++.+.+++|+++++ +.++ + ..+....+++.||+ ...|++||||++|+|+... +|.
T Consensus 75 ~d~~~~~~~~~~~~~-~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~-------~g~ 146 (170)
T 3me7_A 75 KDTLEDIKRFQKEYG-IDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYI-------YGV 146 (170)
T ss_dssp TCCHHHHHHHHHHTT-CCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEE-------ESS
T ss_pred CCCHHHHHHHHHHcC-CCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEE-------eCC
Confidence 46788999998877 3333 1 12466789998774 4568999999999999762 332
Q ss_pred cCCCCCHHHHHHHHHHHHHHhc
Q 013684 351 NAYPFTEAKLEFLEKQMEEEAK 372 (438)
Q Consensus 351 ~~~~~~~~~~~~L~~~i~~~~~ 372 (438)
. .. .+++.++|+++..
T Consensus 147 ~---~~---~~~i~~~l~~~~~ 162 (170)
T 3me7_A 147 N---YN---YLEFVNALRLARG 162 (170)
T ss_dssp S---CC---HHHHHHHHHHHTT
T ss_pred C---CC---HHHHHHHHHHhhc
Confidence 1 12 4666777766554
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-19 Score=155.63 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=105.3
Q ss_pred HhhhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCCh-hhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 209 INLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 209 ~~~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
...+|.++|+|+| |.+|+ .+++++++||+++|+||++||| +|...++.|.++++.+++. +.++++|+||+
T Consensus 5 ~~P~~~~~PdF~L~d~~G~-~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~-------~~~v~~v~isv 76 (170)
T 4hde_A 5 RKPLNWDLETFQFTNQDGK-PFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEE-------KLDVQFVSFSV 76 (170)
T ss_dssp CSCCCBCCCCCEEECTTSC-EEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHT-------TCCCEEEEEES
T ss_pred ccCCCCcCCCcEEECCCCC-EEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcc-------cccceeEeeec
Confidence 4457889999999 99999 9999999999999999999998 8999999999999999876 56799999999
Q ss_pred CC---CHHHHHHHHhcCCC--cccccCCc-h----hHHHHHhc----------CcCceeeEEEECCCCcEEEcccchhhh
Q 013684 287 DR---DQTSFESYFGTMPW--LALPFGDP-T----IKELTKYF----------DVQGIPCLVIIGPEGKTVTKQGRNLIN 346 (438)
Q Consensus 287 d~---~~~~~~~~~~~~~~--~~~p~~~d-~----~~~l~~~~----------~v~~~P~~~lid~~G~i~~~~~~~~~~ 346 (438)
|. +.+.+++|+++++. ..+.++.+ . .......| .+...|++||||++|+++....
T Consensus 77 Dp~~Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~----- 151 (170)
T 4hde_A 77 DPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYS----- 151 (170)
T ss_dssp CTTTCCHHHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEE-----
T ss_pred CcccccHHHHHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEEC-----
Confidence 84 56788999987651 11222111 1 11222233 3345689999999999997631
Q ss_pred hccccCCCCCHHHHHHHHHHHHHHh
Q 013684 347 LYQENAYPFTEAKLEFLEKQMEEEA 371 (438)
Q Consensus 347 ~~g~~~~~~~~~~~~~L~~~i~~~~ 371 (438)
|. .....++|.+.|+.++
T Consensus 152 --g~-----~~~~~~~l~~~ik~Ll 169 (170)
T 4hde_A 152 --GI-----SNTPYEDIIRDMKRLA 169 (170)
T ss_dssp --SS-----SSCCHHHHHHHHHHHH
T ss_pred --CC-----CCCCHHHHHHHHHHHh
Confidence 21 1122456666666654
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-19 Score=174.18 Aligned_cols=192 Identities=16% Similarity=0.206 Sum_probs=125.4
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
.++++|.|+++||++|+.+.|.|.+++++++++ +.++.|+.|.... ..+++.|+|
T Consensus 135 ~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~---i~f~~vd~~~~~~----------------------~~~~~~fgi 189 (361)
T 3uem_A 135 IKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK---ILFIFIDSDHTDN----------------------QRILEFFGL 189 (361)
T ss_dssp CCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT---CEEEEECTTSGGG----------------------HHHHHHTTC
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHHHHHHccCc---eEEEEecCChHHH----------------------HHHHHHcCC
Confidence 357899999999999999999999999999754 6666665442112 788899999
Q ss_pred Cc--cceEEEecCCCCCCCcccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCC----Ccc-CC
Q 013684 151 EG--IPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRG----YLL-GH 223 (438)
Q Consensus 151 ~~--~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~----f~l-~~ 223 (438)
.. +|++++++. ++..... ....-..+.+.+..+............+ .....|. -.+ ..
T Consensus 190 ~~~~~P~~~~~~~---~~~~~ky---------~~~~~~~~~~~l~~fi~~~l~g~~~~~~---~s~~~p~~~~~~~v~~l 254 (361)
T 3uem_A 190 KKEECPAVRLITL---EEEMTKY---------KPESEELTAERITEFCHRFLEGKIKPHL---MSQELPEDWDKQPVKVL 254 (361)
T ss_dssp CTTTCSEEEEEEC---C--CCEE---------CCSSCCCCHHHHHHHHHHHHTTCSCCCC---BCCCCCTTTTTSSSEEE
T ss_pred CccCCccEEEEEc---CCccccc---------CCCccccCHHHHHHHHHHHhcCCCcccc---cCCCCCcccccCCcEEe
Confidence 87 999999985 4332111 1011234455555544433221110000 0111121 112 34
Q ss_pred CCCceeeccc-cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCC
Q 013684 224 PPDEKVPVSS-LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 302 (438)
Q Consensus 224 ~g~~~~~l~~-~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 302 (438)
+++ .+.... ..+|+++|+|||+||++|+.+.|.|.++++.++++ .++.++.|+++.+
T Consensus 255 ~~~-~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~--------~~v~~~~vd~~~~------------- 312 (361)
T 3uem_A 255 VGK-NFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDH--------ENIVIAKMDSTAN------------- 312 (361)
T ss_dssp CTT-THHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTC--------SSEEEEEEETTTC-------------
T ss_pred ecC-chhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccC--------CcEEEEEEECCcc-------------
Confidence 444 333222 25799999999999999999999999999999753 3577777766543
Q ss_pred cccccCCchhHHHHHhcCcCceeeEEEECCC-CcE
Q 013684 303 LALPFGDPTIKELTKYFDVQGIPCLVIIGPE-GKT 336 (438)
Q Consensus 303 ~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~-G~i 336 (438)
. ++.|+|.++||+++++++ |+.
T Consensus 313 ----------~--~~~~~v~~~Pt~~~~~~~~~~~ 335 (361)
T 3uem_A 313 ----------E--VEAVKVHSFPTLKFFPASADRT 335 (361)
T ss_dssp ----------B--CSSCCCCSSSEEEEECSSSSCC
T ss_pred ----------c--hhhcCCcccCeEEEEECCCCcc
Confidence 1 467999999999999655 443
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-19 Score=157.32 Aligned_cols=120 Identities=14% Similarity=0.141 Sum_probs=103.9
Q ss_pred HhhhhcCCCCCcc--CCCCCceeeccc-cCCCEEEEEE-ecCCChhhh-hhhHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 013684 209 INLLTNHDRGYLL--GHPPDEKVPVSS-LVGKTVGLYF-SARWCIPCE-KFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 283 (438)
Q Consensus 209 ~~~~g~~~~~f~l--~~~g~~~~~l~~-~~gk~vll~F-~a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~ 283 (438)
...+|..+|+|++ +.+|+ .+++++ ++||+++|+| |++|||+|. .++|.|.+++++|+++ +++||+
T Consensus 14 ~~~vG~~aPdf~l~~~~~g~-~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~---------gv~vv~ 83 (173)
T 3mng_A 14 PIKVGDAIPAVEVFEGEPGN-KVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK---------GVQVVA 83 (173)
T ss_dssp CCCTTCBCCCCEEECSSTTC-EEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT---------TCCEEE
T ss_pred CCCCCCCCCCeEeeeCCCCC-EEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC---------CCEEEE
Confidence 3467999999999 68999 999999 5999666555 599999999 5999999999999876 899997
Q ss_pred -EecCCCHHHHHHHHhcCCCc-ccccCCchhHHHHHhcCcC-------------ceeeEEEECCCCcEEEcc
Q 013684 284 -VSTDRDQTSFESYFGTMPWL-ALPFGDPTIKELTKYFDVQ-------------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 284 -is~d~~~~~~~~~~~~~~~~-~~p~~~d~~~~l~~~~~v~-------------~~P~~~lid~~G~i~~~~ 340 (438)
||.| +.+..++|.++++.- .||++.|...++++.||+. ..|++|||| +|+|++..
T Consensus 84 ~iS~D-~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~ 153 (173)
T 3mng_A 84 CLSVN-DAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALN 153 (173)
T ss_dssp EEESS-CHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred EEcCC-CHHHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEE
Confidence 9998 567889999988832 3999999999999999985 359999999 99999985
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-19 Score=161.91 Aligned_cols=136 Identities=12% Similarity=0.112 Sum_probs=111.2
Q ss_pred hhhcCCCCCcc-CC--CC-Cceeeccc-cCCCEE-EEEEecCCChhhhh-hhHHHHHHHHHHHhhhhhcCCCCCCEE-EE
Q 013684 211 LLTNHDRGYLL-GH--PP-DEKVPVSS-LVGKTV-GLYFSARWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDFE-VV 282 (438)
Q Consensus 211 ~~g~~~~~f~l-~~--~g-~~~~~l~~-~~gk~v-ll~F~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~~~~~~~~-vv 282 (438)
.+|..+|+|++ +. +| + .+++++ ++||++ |++||++|||+|.. ++|.|++++++|+++ +++ |+
T Consensus 27 ~vG~~aPdf~l~~~~~~G~~-~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~---------gv~~vv 96 (184)
T 3uma_A 27 AVGDKLPNATFKEKTADGPV-EVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILAR---------GVDDIA 96 (184)
T ss_dssp CTTCBCCCCEEEEEETTEEE-EEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT---------TCCEEE
T ss_pred CCCCCCCCcEeecccCCCce-EEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHc---------CCCEEE
Confidence 47899999999 87 88 8 999999 899955 55566999999999 799999999999876 788 99
Q ss_pred EEecCCCHHHHHHHHhcCCCcc--cccCCchhHHHHHhcCcC-----------ceeeEEEECCCCcEEEcccchhhhhcc
Q 013684 283 FVSTDRDQTSFESYFGTMPWLA--LPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQGRNLINLYQ 349 (438)
Q Consensus 283 ~is~d~~~~~~~~~~~~~~~~~--~p~~~d~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~~~~~~~~~~g 349 (438)
+||.| +.+..++|.++++ +. ||++.|.+.++++.||+. ..|++|||| +|+|++.. .|
T Consensus 97 ~Is~d-~~~~~~~f~~~~~-~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~-------~~ 166 (184)
T 3uma_A 97 VVAVN-DLHVMGAWATHSG-GMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALN-------IE 166 (184)
T ss_dssp EEESS-CHHHHHHHHHHHT-CTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEE-------EC
T ss_pred EEECC-CHHHHHHHHHHhC-CCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEE-------Ee
Confidence 99998 5678889998887 55 999999999999999995 357899996 99999984 34
Q ss_pred ccCCCCCHHHHHHHHHH
Q 013684 350 ENAYPFTEAKLEFLEKQ 366 (438)
Q Consensus 350 ~~~~~~~~~~~~~L~~~ 366 (438)
.++-+++....+++.++
T Consensus 167 ~~~g~~~~~~~~~vL~~ 183 (184)
T 3uma_A 167 ESPGQATASGAAAMLEL 183 (184)
T ss_dssp SSTTCCSTTSHHHHHHH
T ss_pred CCCCCCcCCCHHHHHhh
Confidence 43334455555555543
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-19 Score=159.29 Aligned_cols=115 Identities=15% Similarity=0.150 Sum_probs=99.5
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCC-ChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+||++| |++|+.++|.|.+++++ . +++||+|++| +
T Consensus 20 ~G~~~P~f~l~~~~G~-~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~---------~v~vv~Is~D-~ 85 (175)
T 1xvq_A 20 VGSPAPAFTLTGGDLG-VISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---S---------GATVLCVSKD-L 85 (175)
T ss_dssp TTSBCCCCEEECTTSC-EEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---T---------TCEEEEEESS-C
T ss_pred cCCcCCCeEEECCCCC-EEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---c---------CCEEEEEECC-C
Confidence 6889999999 99999 99999999999999999999 99999999999999988 3 5899999998 4
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhcCcCce---------eeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGI---------PCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~---------P~~~lid~~G~i~~~~ 340 (438)
.+..++|++++++-.+|+..|....+.+.|++... |+++|||++|+|+++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~ 145 (175)
T 1xvq_A 86 PFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTE 145 (175)
T ss_dssp HHHHTTCC------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEE
Confidence 56678888887733789988888899999999887 9999999999999874
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=159.87 Aligned_cols=134 Identities=13% Similarity=0.135 Sum_probs=102.0
Q ss_pred hcCCCCCcc-CCC-CCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--
Q 013684 213 TNHDRGYLL-GHP-PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 288 (438)
Q Consensus 213 g~~~~~f~l-~~~-g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-- 288 (438)
+..+|+|++ +.+ |+ .+++++++||+|||+|||+|||+|+ ++|.|++++++|+++ +++||+|++|.
T Consensus 32 ~~~~pdF~l~d~~~G~-~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~---------g~~Vlgvs~d~f~ 100 (215)
T 2i3y_A 32 KGTIYDYEAIALNKNE-YVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPY---------GLVVLGFPCNQFG 100 (215)
T ss_dssp CCCGGGCEEEBSSSSC-EEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGG---------TEEEEEEECCCST
T ss_pred cCCcCCcEeeeCCCCC-EEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccC---------CeEEEEEEccccC
Confidence 456899999 999 99 9999999999999999999999999 999999999999876 79999999762
Q ss_pred -----CHHHHHHHHh------cCCCcccccCCch--hH----HHHH----h-------cC--------------cCceee
Q 013684 289 -----DQTSFESYFG------TMPWLALPFGDPT--IK----ELTK----Y-------FD--------------VQGIPC 326 (438)
Q Consensus 289 -----~~~~~~~~~~------~~~~~~~p~~~d~--~~----~l~~----~-------~~--------------v~~~P~ 326 (438)
+.+++++|++ +++ ++||+..+. +. .+.. . ++ |...|+
T Consensus 101 ~~e~~~~~~i~~f~~~~~~~~~~~-~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npt 179 (215)
T 2i3y_A 101 KQEPGDNKEILPGLKYVRPGGGFV-PSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFE 179 (215)
T ss_dssp TCCCSCHHHHHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTC
T ss_pred cCCCCCHHHHHHHHHhccchhccC-ccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCce
Confidence 4577888998 666 788876531 11 1111 1 11 222389
Q ss_pred EEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhc
Q 013684 327 LVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK 372 (438)
Q Consensus 327 ~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~ 372 (438)
+||||++|+++.+.. | ..++ ++|.+.|+++++
T Consensus 180 tfLID~~G~vv~~~~-------g----~~~~---~~l~~~I~~ll~ 211 (215)
T 2i3y_A 180 KFLVGPDGIPVMRWS-------H----RATV---SSVKTDILAYLK 211 (215)
T ss_dssp EEEECTTSCEEEEEC-------T----TSCH---HHHHHHHHHHGG
T ss_pred EEEECCCCeEEEEeC-------C----CCCH---HHHHHHHHHHHH
Confidence 999999999998742 1 1122 456677776664
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-19 Score=155.54 Aligned_cols=119 Identities=21% Similarity=0.336 Sum_probs=104.0
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCH
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 118 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~ 118 (438)
+|..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++.+ +.++.|++|.+.
T Consensus 2 ~G~~~p~~~--------l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~v~~d~~~ 71 (151)
T 2f9s_A 2 EGSDAPNFV--------LEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESK 71 (151)
T ss_dssp CCEECCCCE--------EECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCH
T ss_pred CCCcCCcce--------eEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCCCH
Confidence 588899999 8999999999999999999999999999999999999999999998765 999999999999
Q ss_pred HHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 119 NAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.++++.+++++....+.+.. ..+.+.|++.++|++++||+ +|+++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~~ 120 (151)
T 2f9s_A 72 IAVHNFMKSYGVNFPVVLDTD--RQVLDAYDVSPLPTTFLINP---EGKVVKVV 120 (151)
T ss_dssp HHHHHHHHHHTCCSCEEEETT--SHHHHHTTCCSSCEEEEECT---TSEEEEEE
T ss_pred HHHHHHHHHcCCCceEEECCc--hHHHHhcCCCCCCeEEEECC---CCcEEEEE
Confidence 999999987664322222332 67899999999999999999 99988764
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-19 Score=153.35 Aligned_cols=120 Identities=21% Similarity=0.251 Sum_probs=106.4
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
.+|..+|+|+ +.+ +|+.+++++++||+++|+||++||++|+.+.|.|.++++++++.+ +.+++|++|.+
T Consensus 4 ~~G~~~P~f~--------l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~ 72 (152)
T 3gl3_A 4 DKGDKAPDFA--------LPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAK 72 (152)
T ss_dssp CTTSBCCCCE--------EEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGT--EEEEEEECCSS
T ss_pred CCCCcCCceE--------eeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEECCCC
Confidence 4799999999 889 999999999999999999999999999999999999999999876 99999999999
Q ss_pred HHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 118 LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.+.+.++.+++++....+.|.. ..+.+.|++.++|+++|||+ +|+++.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 123 (152)
T 3gl3_A 73 TGDAMKFLAQVPAEFTVAFDPK--GQTPRLYGVKGMPTSFLIDR---NGKVLLQHV 123 (152)
T ss_dssp HHHHHHHHHHSCCCSEEEECTT--CHHHHHTTCCSSSEEEEECT---TSBEEEEEE
T ss_pred HHHHHHHHHHcCCCCceeECCc--chhHHHcCCCCCCeEEEECC---CCCEEEEEc
Confidence 9999999998775433333443 57899999999999999999 999987654
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-19 Score=157.43 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=101.7
Q ss_pred hhhcCCCCCcc-CC----CC-----Cceeecccc-CCC-EEEEEEecCCChhhhhh-hHHHHHHHHHHHhhhhhcCCCCC
Q 013684 211 LLTNHDRGYLL-GH----PP-----DEKVPVSSL-VGK-TVGLYFSARWCIPCEKF-MPKLLSIYQKIKQNLVEKGDALE 277 (438)
Q Consensus 211 ~~g~~~~~f~l-~~----~g-----~~~~~l~~~-~gk-~vll~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~~~~~ 277 (438)
.+|..+|+|++ +. +| + .++++++ +|| +||++||++|||+|..+ +|.|.+++++|+++
T Consensus 8 ~~g~~aP~f~l~~~~~~~~G~~~~~~-~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~--------- 77 (171)
T 2pwj_A 8 DILSAASNVSLQKARTWDEGVESKFS-TTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAK--------- 77 (171)
T ss_dssp --CCCSSSBCCCSCEECCCSSCTTCC-CEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHT---------
T ss_pred cccCcCCCeEEecccccccCCccCcc-eEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHC---------
Confidence 46779999999 76 57 8 9999996 996 67778999999999999 99999999999876
Q ss_pred CEE-EEEEecCCCHHHHHHHHhcCCC-cccccCCchhHHHHHhcCcCc-----------eeeEEEECCCCcEEEcc
Q 013684 278 DFE-VVFVSTDRDQTSFESYFGTMPW-LALPFGDPTIKELTKYFDVQG-----------IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 278 ~~~-vv~is~d~~~~~~~~~~~~~~~-~~~p~~~d~~~~l~~~~~v~~-----------~P~~~lid~~G~i~~~~ 340 (438)
+++ |++||.| +.+..++|.++++. ++||++.|...++++.||+.. .|+.++|| +|+|++..
T Consensus 78 g~~~vv~Is~d-~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~ 151 (171)
T 2pwj_A 78 GVDSVICVAIN-DPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALN 151 (171)
T ss_dssp TCSEEEEEESS-CHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEE
T ss_pred CCCEEEEEeCC-CHHHHHHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEE
Confidence 789 9999998 56788999998885 479999999999999999853 56788888 99999874
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=163.54 Aligned_cols=119 Identities=15% Similarity=0.186 Sum_probs=105.4
Q ss_pred hhhcCCCCCcc----CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 211 LLTNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 211 ~~g~~~~~f~l----~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+|| ++||++|..++|.|.+++++|+++ +++||+|+
T Consensus 63 ~vG~~aPdF~l~~l~d~~G~-~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~---------gv~vv~IS 132 (254)
T 3tjj_A 63 KISKPAPYWEGTAVIDGEFK-ELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI---------NTEVVACS 132 (254)
T ss_dssp CTTSBCCCCEEEEEETTEEE-EEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTT---------TEEEEEEE
T ss_pred CCCCCCCCcEeeeecCCCCc-EEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHc---------CCEEEEEc
Confidence 47999999995 45678 99999999999999999 999999999999999999999866 89999999
Q ss_pred cCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
+| +.+..++|++.. ..+.||+..|....+++.||+. .+|++||||++|+|++..
T Consensus 133 ~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~ 198 (254)
T 3tjj_A 133 VD-SQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQIT 198 (254)
T ss_dssp SS-CHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred CC-CHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEE
Confidence 98 456777887765 1378999999889999999995 589999999999999874
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-19 Score=165.08 Aligned_cols=122 Identities=12% Similarity=0.162 Sum_probs=106.3
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCC-EEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
+.+|..+|+|+ +.+.+|+.+++++++|| ++||+||++||++|+.++|.|.++++++++.+ ++||+|++|
T Consensus 32 l~~G~~aP~f~--------l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Vs~d 101 (218)
T 3u5r_E 32 ITLGTRAADFV--------LPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQG--LAVVAINSN 101 (218)
T ss_dssp CCTTCBCCCCC--------EECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTT--EEEEEEECS
T ss_pred CCCCCcCCCcE--------eECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCC--cEEEEEECC
Confidence 45799999999 99999999999999999 59999999999999999999999999998876 999999997
Q ss_pred -------CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 116 -------EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 -------~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++.+.++++.+++++....+.|.. ..+.+.|++..+|+++|||+ +|+++++..
T Consensus 102 ~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~~v~~~P~~~liD~---~G~i~~~g~ 161 (218)
T 3u5r_E 102 DAQAFPEETLERVGAEVKAYGYGFPYLKDAS--QSVAKAYGAACTPDFFLYDR---ERRLVYHGQ 161 (218)
T ss_dssp CTTTCGGGSHHHHHHHHHHHTCCSCEEECTT--CHHHHHHTCCEESEEEEECT---TCBEEEEEC
T ss_pred cccccccCCHHHHHHHHHHhCCCccEEECCc--cHHHHHcCCCCCCeEEEECC---CCcEEEecc
Confidence 788889999987664322222433 68899999999999999999 999987654
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=155.88 Aligned_cols=124 Identities=19% Similarity=0.278 Sum_probs=99.7
Q ss_pred hhhhcCC--CCCcc-CCCCCceeeccccCCCEEEEEEecCCChh-hhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 210 NLLTNHD--RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 210 ~~~g~~~--~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
..+|..+ |+|++ +.+|+ .+++++++||++||+||++||++ |..++|.|.++++++.++. +.+++||+|+
T Consensus 13 ~~~g~~~~~p~f~l~d~~G~-~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~------~~~v~vv~Is 85 (200)
T 2b7k_A 13 RGYGKPSLGGPFHLEDMYGN-EFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKY------GITLQPLFIT 85 (200)
T ss_dssp ---CCCCCCCCCEEEETTSC-EEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH------CCCCEEEEEE
T ss_pred hccCCCCcCCCEEEEcCCCC-EEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhh------CCceEEEEEE
Confidence 3467775 99999 99999 99999999999999999999997 9999999999999997531 2379999999
Q ss_pred cCC---CHHHHHHHHhcCC--CcccccCCchhHHHHHhcCcC-cee---------------eEEEECCCCcEEEcc
Q 013684 286 TDR---DQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQ-GIP---------------CLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~---~~~~~~~~~~~~~--~~~~p~~~d~~~~l~~~~~v~-~~P---------------~~~lid~~G~i~~~~ 340 (438)
+|. +.+.+++|+++++ |..++...+....+++.|||. +.| ++||||++|+++.+.
T Consensus 86 ~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~ 161 (200)
T 2b7k_A 86 CDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDAL 161 (200)
T ss_dssp SCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEE
T ss_pred CCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEe
Confidence 985 6788999998876 333344445677899999997 444 789999999999874
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-20 Score=160.35 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=96.6
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|+++|+|+ +.+.+|+.++|++++||+++|+|| ++|||+|+.++|.|+++++++++.+ +++++||.|
T Consensus 5 ~vG~~aPdF~--------l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~--~~~v~vs~d- 73 (157)
T 4g2e_A 5 EIGELAPDFE--------LPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVN--AVVLGISVD- 73 (157)
T ss_dssp CTTSBCCCCE--------EEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCS--SEEEEEESS-
T ss_pred CCCCCCcCeE--------eECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccC--ceEeeeccc-
Confidence 4799999999 999999999999999999999999 9999999999999999999998876 999999998
Q ss_pred CHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC-----------ccceEEEecCCCCCCCcccccc
Q 013684 117 DLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~-----------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+..+++.+++++......|.+ .++++.||+. ..|++||||+ +|+|++...
T Consensus 74 ~~~~~~~~~~~~~~~~p~l~D~~--~~v~~~ygv~~~~~~~~~~~~~~p~tflID~---~G~I~~~~~ 136 (157)
T 4g2e_A 74 PPFSNKAFKEHNKLNFTILSDYN--REVVKKYNVAWEFPALPGYVLAKRAVFVIDK---EGKVRYKWV 136 (157)
T ss_dssp CHHHHHHHHHHTTCCSEEEECTT--SHHHHHTTCEEECTTSTTCEEECEEEEEECT---TSBEEEEEE
T ss_pred chhHHHHHHHHcCCcEEEEEcCC--cHHHHHcCCccccccCCCcceeeeeEEEECC---CCEEEEEEE
Confidence 56778888887664332233544 6889999884 4789999999 999987654
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-20 Score=159.31 Aligned_cols=125 Identities=34% Similarity=0.627 Sum_probs=107.3
Q ss_pred cchhHHHHHhhcccccCCCCCEEeccc-cCCC-EEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHH
Q 013684 42 LSQWYVQQLRRRMTSTKEIGEEVKVSD-LEGK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN 119 (438)
Q Consensus 42 ~~p~f~~~~~~~~~~~~~~g~~v~l~~-~~gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~ 119 (438)
.+|+|+ +.+.+|+.+++++ ++|| +++|+||++||++|+.++|.|.++++++++.+.++.+++|++|.+.+
T Consensus 3 ~~p~~~--------l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~ 74 (143)
T 2lus_A 3 FIQGIK--------LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSED 74 (143)
Confidence 468888 8999999999999 9999 99999999999999999999999999996544469999999998888
Q ss_pred HHHHhHhcC--CcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccchhHHh
Q 013684 120 AFNNYRACM--PWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIY 178 (438)
Q Consensus 120 ~~~~~~~~~--~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~ 178 (438)
.+.++++++ +|..+++. .+....+++.|++.++|++++||+ +|+++.+.+...+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~~~~~~ 131 (143)
T 2lus_A 75 DMFQYMMESHGDWLAIPYR-SGPASNVTAKYGITGIPALVIVKK---DGTLISMNGRGEVQ 131 (143)
Confidence 899999876 46666653 333368999999999999999999 99999887755544
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-19 Score=153.48 Aligned_cols=120 Identities=19% Similarity=0.283 Sum_probs=104.7
Q ss_pred Hhhccch-hHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQ-WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p-~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|.++| +|+ +.+.+|+.+++++++||+++|+||++||++|+.+.|.|.++++++++.+ +.++.|+.|.
T Consensus 4 ~~G~~~p~~f~--------l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~ 73 (152)
T 2lja_A 4 RSGNPSAASFS--------YPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCDK 73 (152)
T ss_dssp TTTCCCSSSCE--------EEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSS--EEEEEEECCS
T ss_pred ccCCCCCcccE--------eecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCC--eEEEEEEccC
Confidence 4789999 999 8999999999999999999999999999999999999999999987754 9999999999
Q ss_pred CHHHHHHhHhcCCcccccC-CChHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 117 DLNAFNNYRACMPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.+.+++++++.++...++ .+.. ..+.+.|++.++|+++++|+ +|+++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~~ 125 (152)
T 2lja_A 74 NKKAWENMVTKDQLKGIQLHMGTD--RTFMDAYLINGIPRFILLDR---DGKIISAN 125 (152)
T ss_dssp CHHHHHHHHHHHTCCSEEEECSSC--THHHHHTTCCSSCCEEEECT---TSCEEESS
T ss_pred cHHHHHHHHHhcCCCCceeecCcc--hhHHHHcCcCCCCEEEEECC---CCeEEEcc
Confidence 9889999998765433222 1332 68899999999999999999 99998764
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-19 Score=156.26 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=101.6
Q ss_pred hhccchhHHHHHhhcccccC--CCCCEEeccccCCCEEEEEEeccCCccchhh-HHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 39 IMSLSQWYVQQLRRRMTSTK--EIGEEVKVSDLEGKVTALYFSANWYPPCGNF-TGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~--~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
.|..+|+|+ +.+ .+|+.+++++++||+++|+||++||++|+.+ +|.|.++++++++.+ +.+++|++|
T Consensus 2 ~g~~aP~f~--------l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~--v~~v~v~~~ 71 (158)
T 3eyt_A 2 NAMKAPELQ--------IQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTV 71 (158)
T ss_dssp CCEECCCCC--------EEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT--EEEEEEECC
T ss_pred CCCcCCCce--------ehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCC--EEEEEEEec
Confidence 478899999 888 3889999999999999999999999999997 999999999998765 999999984
Q ss_pred ------CCHHHHHHhHhcCCcccccCCChHHH---HHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 116 ------EDLNAFNNYRACMPWLAVPYSDLETK---KALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ------~~~~~~~~~~~~~~~~~~~~~d~~~~---~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++.+.++++++++++....+.+.... ..+++.|++.++|+++|||+ +|+++.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 135 (158)
T 3eyt_A 72 FEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDK---AGDLRAHHF 135 (158)
T ss_dssp CSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECT---TSEEEEEEE
T ss_pred ccccccCCHHHHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCCCCCEEEEECC---CCCEEEEEe
Confidence 58889999999776432222233210 16899999999999999999 999987654
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-19 Score=157.36 Aligned_cols=124 Identities=15% Similarity=0.092 Sum_probs=102.8
Q ss_pred HHhhccchhHHHHHhhcccccC-CCCCEEeccccCCCEEEEEEeccCCccchhh-HHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTK-EIGEEVKVSDLEGKVTALYFSANWYPPCGNF-TGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~-~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
.+.|.++|+|+ +.+ .+|+.+++++++||+++|+||++||++|+.+ +|.|.++++++++++ +.+++|++
T Consensus 3 ~~~g~~~p~~~--------~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~--v~~v~v~~ 72 (160)
T 3lor_A 3 SLDNAPLLELD--------VQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHS 72 (160)
T ss_dssp -CTTCCBCCCC--------EEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT--EEEEEEEC
T ss_pred ccCCCcCCCcc--------cccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCC--cEEEEEec
Confidence 34689999999 888 8999999999999999999999999999995 999999999998765 99999998
Q ss_pred C------CCHHHHHHhHhcCCcccccCCChHH----HHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 115 D------EDLNAFNNYRACMPWLAVPYSDLET----KKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 115 D------~~~~~~~~~~~~~~~~~~~~~d~~~----~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
| ++.+.++++.+.+++......+... ...+.+.|++.++|+++|||+ +|+++.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 138 (160)
T 3lor_A 73 VFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADR---KGRIRQVQF 138 (160)
T ss_dssp CCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECT---TSBEEEEEE
T ss_pred cccccccCCHHHHHHHHHHcCCCCcEEECCccccchhhhHHHhcccCccceEEEECC---CCcEEEEec
Confidence 4 6889999999977643222222221 012889999999999999999 999987644
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.1e-19 Score=152.69 Aligned_cols=121 Identities=22% Similarity=0.318 Sum_probs=104.8
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
.+|.++|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++.+ +.+++|++|.+
T Consensus 3 ~~G~~~p~~~--------l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~ 72 (154)
T 3kcm_A 3 LEENPAPDFT--------LNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSIDEG 72 (154)
T ss_dssp CTTSBCCCCE--------EECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSS--EEEEEEECCTT
T ss_pred CCCCCCCCeE--------EEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEEcCCc
Confidence 5799999999 9999999999999999999999999999999999999999999998765 99999999987
Q ss_pred -HHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 118 -LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 118 -~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.+.++++.+.+++....+.+.. ..+.+.|++.++|+++|||+ +|+++.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 124 (154)
T 3kcm_A 73 GKVAVEEFFRKTGFTLPVLLDAD--KRVGKLYGTTGVPETFVIDR---HGVILKKVV 124 (154)
T ss_dssp HHHHHHHHHHHHCCCCCEEECTT--CHHHHHHTCCSBCEEEEECT---TSBEEEEEE
T ss_pred chHHHHHHHHHcCCCeeEEecCc--hHHHHHhCCCCCCeEEEECC---CCcEEEEEc
Confidence 7888888886654322222333 67899999999999999999 999987643
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.1e-18 Score=175.29 Aligned_cols=66 Identities=21% Similarity=0.388 Sum_probs=58.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+|||+||++|+.+.|.+.++++++++.+ +.++.|+.+.. ..+++.|+
T Consensus 30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~--v~~~~vd~~~~------------------------~~l~~~~~ 83 (504)
T 2b5e_A 30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQIDCTEN------------------------QDLCMEHN 83 (504)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTT--CEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCC--eEEEEEECCCC------------------------HHHHHhcC
Confidence 57999999999999999999999999999997653 88888876644 67899999
Q ss_pred cCccceEEEecC
Q 013684 150 IEGIPCLVVLQP 161 (438)
Q Consensus 150 v~~~P~~~lvd~ 161 (438)
|.++||++++..
T Consensus 84 v~~~Pt~~~~~~ 95 (504)
T 2b5e_A 84 IPGFPSLKIFKN 95 (504)
T ss_dssp CCSSSEEEEEET
T ss_pred CCcCCEEEEEeC
Confidence 999999999973
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=156.19 Aligned_cols=116 Identities=9% Similarity=0.065 Sum_probs=92.3
Q ss_pred hcCCCCCcc-CCC-CCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC---
Q 013684 213 TNHDRGYLL-GHP-PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--- 287 (438)
Q Consensus 213 g~~~~~f~l-~~~-g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d--- 287 (438)
...+|+|++ +.+ |+ .+++++++||+|||+|||+|||+| .++|.|++++++|+++ +++||+|++|
T Consensus 14 ~~~~pdF~l~d~~~G~-~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~---------g~~vlgvs~d~f~ 82 (207)
T 2r37_A 14 SGTIYEYGALTIDGEE-YIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPF---------GLVILGFPCNQFG 82 (207)
T ss_dssp -CCGGGCEEEBTTSSC-EEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGG---------TEEEEEEECCCBT
T ss_pred cCccCCeEeeeCCCCC-EEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccC---------CEEEEEEECcccC
Confidence 457899999 999 99 999999999999999999999999 7999999999999876 7999999976
Q ss_pred ----CCHHHHHHHHh------cCCCcccccCCch--h----HHHH----Hhc-------C--------------cCceee
Q 013684 288 ----RDQTSFESYFG------TMPWLALPFGDPT--I----KELT----KYF-------D--------------VQGIPC 326 (438)
Q Consensus 288 ----~~~~~~~~~~~------~~~~~~~p~~~d~--~----~~l~----~~~-------~--------------v~~~P~ 326 (438)
.+.+++++|++ +++ +.||+..+. + ..+. ... + |...|+
T Consensus 83 ~~e~~~~~~i~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~t 161 (207)
T 2r37_A 83 KQEPGENSEILPTLKYVRPGGGFV-PNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFE 161 (207)
T ss_dssp TCCCSCHHHHHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTC
T ss_pred cCCCCCHHHHHHHHHhcchhhccC-ccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccce
Confidence 24577888998 666 788876431 1 1111 111 1 222389
Q ss_pred EEEECCCCcEEEcc
Q 013684 327 LVIIGPEGKTVTKQ 340 (438)
Q Consensus 327 ~~lid~~G~i~~~~ 340 (438)
+||||++|+++.+.
T Consensus 162 tflID~~G~i~~~~ 175 (207)
T 2r37_A 162 KFLVGPDGIPIMRW 175 (207)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEECCCCcEEEEE
Confidence 99999999999874
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-19 Score=164.78 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=104.2
Q ss_pred hhhcCCCCCcc-CC-CCC-ceeeccc-cCCCEEEEEEe-cCCChhhh-hhhHHHHHHHHHHHhhhhhcCCCCCCE-EEEE
Q 013684 211 LLTNHDRGYLL-GH-PPD-EKVPVSS-LVGKTVGLYFS-ARWCIPCE-KFMPKLLSIYQKIKQNLVEKGDALEDF-EVVF 283 (438)
Q Consensus 211 ~~g~~~~~f~l-~~-~g~-~~~~l~~-~~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~~~~~~~-~vv~ 283 (438)
.+|..+|+|++ +. +|+ +.+++++ ++||+++|+|| ++|||+|. .++|.|++++++|+++ ++ +|++
T Consensus 4 ~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~---------~~~~vv~ 74 (241)
T 1nm3_A 4 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY---------GVDDILV 74 (241)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT---------TCCEEEE
T ss_pred cCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCEEEE
Confidence 36889999999 75 452 1589999 89999999999 99999999 9999999999999876 89 9999
Q ss_pred EecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcC-----------ceeeEEEECCCCcEEEcc
Q 013684 284 VSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 284 is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~~ 340 (438)
||.| +.+..++|.++++...||+..|.+.++++.||+. ..|+++|| ++|+|++..
T Consensus 75 is~d-~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~ 140 (241)
T 1nm3_A 75 VSVN-DTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMF 140 (241)
T ss_dssp EESS-CHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEE
T ss_pred EEcC-CHHHHHHHHHhcCCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEE
Confidence 9998 4678899999888445999999999999999986 45899999 999999874
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=187.14 Aligned_cols=181 Identities=12% Similarity=0.120 Sum_probs=124.8
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|.||++||++|+.+.|.+.++++.+++. +.++.|+.+.. ..+++.|+|
T Consensus 563 ~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~v 615 (780)
T 3apo_A 563 DEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL---INVGSVDCGQY------------------------HSFCTQENV 615 (780)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTT------------------------HHHHHHTTC
T ss_pred CCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCC---eEEEEEECcch------------------------HHHHHHcCC
Confidence 578999999999999999999999999999753 66665554422 678899999
Q ss_pred CccceEEEecCCCCCCCcccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCCCccCCCCCceee
Q 013684 151 EGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVP 230 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~f~l~~~g~~~~~ 230 (438)
.++|+++++.. ++..... .. .+ .+...+.+.+..+... ..+......++. .+.
T Consensus 616 ~~~Pti~~~~~---~~~~~~~-~~----~y--~g~~~~~~~l~~fi~~----------------~~~~~v~~l~~~-~~~ 668 (780)
T 3apo_A 616 QRYPEIRFYPQ---KSSKAYQ-YH----SY--NGWNRDAYSLRSWGLG----------------FLPQASIDLTPQ-TFN 668 (780)
T ss_dssp CSSSEEEEECC---CSSSCCS-CE----EC--CCSCCSHHHHHHHHHT----------------TSCCCSEEECHH-HHH
T ss_pred CCCCeEEEEcC---CCcCccc-hh----hc--CCCCCCHHHHHHHHhh----------------hcccccccCCHH-HHH
Confidence 99999999985 3321000 00 00 0011222222222211 111111133333 331
Q ss_pred -ccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC
Q 013684 231 -VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 309 (438)
Q Consensus 231 -l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~ 309 (438)
.-.-.|++++|+|||+||++|+.+.|.+.++++++++ ++.++.|+++..
T Consensus 669 ~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~----------~~~~~~vd~~~~-------------------- 718 (780)
T 3apo_A 669 EKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKG----------KVRAGKVDCQAY-------------------- 718 (780)
T ss_dssp HHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT----------TCEEEEEETTTC--------------------
T ss_pred HHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CceEEEEECCCC--------------------
Confidence 1112478999999999999999999999999999864 378888888755
Q ss_pred chhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 310 PTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 310 d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..+++.|+|.++||++++ ++|+++.+
T Consensus 719 ---~~~~~~~~v~~~Pt~~~~-~~g~~~~~ 744 (780)
T 3apo_A 719 ---PQTCQKAGIKAYPSVKLY-QYERAKKS 744 (780)
T ss_dssp ---HHHHHHTTCCSSSEEEEE-EEETTTTE
T ss_pred ---HHHHHhcCCCcCCEEEEE-cCCCcccc
Confidence 568899999999999999 88876543
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=151.96 Aligned_cols=118 Identities=19% Similarity=0.319 Sum_probs=104.3
Q ss_pred HHHHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 35 LRFLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 35 ~~~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
....+|..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|.+++++++ + +.++.|++
T Consensus 9 ~~~~~g~~~p~~~--------l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~--v~vv~i~~ 76 (165)
T 3ha9_A 9 HSEEVLEREASFS--------LTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--E--ISVIAIDF 76 (165)
T ss_dssp HHHHHHHHHHCCC--------EEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--T--EEEEEEEC
T ss_pred ccccccCcCCCCE--------eecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--C--cEEEEEEe
Confidence 4556899999999 9999999999999999999999999999999999999999999986 3 99999999
Q ss_pred C------------------CCHHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcCccceEEEecCCCCCCCccc
Q 013684 115 D------------------EDLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 115 D------------------~~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~ 170 (438)
| .+.+.++++.+++++..++ +.+ ...+.+.|++.++|+++|||+ +|+++.
T Consensus 77 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~v~~~P~~~lid~---~G~i~~ 145 (165)
T 3ha9_A 77 WTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMD---DGSLVEKFNVRSIDYIVIMDK---SSNVLY 145 (165)
T ss_dssp CSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC---CSHHHHHTTCCSSSEEEEEET---TCCEEE
T ss_pred cccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeEEeC---hHHHHHHhCCCCceEEEEEcC---CCcEEE
Confidence 9 7999999999977652222 223 278999999999999999999 999987
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=152.01 Aligned_cols=120 Identities=23% Similarity=0.310 Sum_probs=102.9
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
..+|.++|+|+ +.+.+|+.+++++++||+++|+||++||++|+.+.|.|.++++++++.+ +.++.|++|.
T Consensus 8 ~~~g~~~p~~~--------l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--v~~v~v~~d~ 77 (165)
T 3or5_A 8 DARPTPAPSFS--------GVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVNE 77 (165)
T ss_dssp CCCCCBCCCCE--------EECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTT--EEEEEEECSC
T ss_pred hcCCCCCCCce--------eeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCC
Confidence 34789999999 8999999999999999999999999999999999999999999998765 9999999999
Q ss_pred CHHHHHHhHhcCCcccccCCChHHHHHHhhhc------CcCccceEEEecCCCCCCCccccc
Q 013684 117 DLNAFNNYRACMPWLAVPYSDLETKKALNRKF------DIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~------~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.+.++++.+++++....+.+. ..+.+.| ++.++|+++|||+ +|+++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~P~~~lid~---~G~i~~~~ 133 (165)
T 3or5_A 78 QLPNVKNYMKTQGIIYPVMMAT---PELIRAFNGYIDGGITGIPTSFVIDA---SGNVSGVI 133 (165)
T ss_dssp CHHHHHHHHHHHTCCSCEEECC---HHHHHHHHTTSTTCSCSSSEEEEECT---TSBEEEEE
T ss_pred CHHHHHHHHHHcCCCCceEecC---HHHHHHHhhhhccCCCCCCeEEEECC---CCcEEEEE
Confidence 9999999998665332222232 3566666 8999999999999 99998664
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.5e-19 Score=153.85 Aligned_cols=119 Identities=24% Similarity=0.331 Sum_probs=102.3
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChh-hhhhhHHHHHHHHHHHhhhhhcCCCC-CCEEEEEEecC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDAL-EDFEVVFVSTD 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~~~-~~~~vv~is~d 287 (438)
+.|..+|+|++ +.+| .+++++++||+++|+||++||++ |+.++|.|.+++++|+++ + .+++||+|++|
T Consensus 11 ~~G~~~p~f~l~~~~g--~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~-------~~~~v~vv~is~d 81 (172)
T 2k6v_A 11 LLNPKPVDFALEGPQG--PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPK-------AQERVQVIFVSVD 81 (172)
T ss_dssp EEEEEECCCEEECSSS--EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHH-------HHTTEEEEEEESC
T ss_pred ccCCCCCCeEEEcCCC--CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhh-------ccCCEEEEEEEEC
Confidence 46788999999 9988 79999999999999999999997 999999999999988753 1 26999999998
Q ss_pred C---CHHHHHHHHhcCCCcccccCCchh---HHHHHhcCc---------------CceeeEEEECCCCcEEEcc
Q 013684 288 R---DQTSFESYFGTMPWLALPFGDPTI---KELTKYFDV---------------QGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 288 ~---~~~~~~~~~~~~~~~~~p~~~d~~---~~l~~~~~v---------------~~~P~~~lid~~G~i~~~~ 340 (438)
. +.+.+++|+++++ +.+|+..|.. ..+++.|++ .++|+++||| +|+++.+.
T Consensus 82 ~~~d~~~~~~~~~~~~~-~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~ 153 (172)
T 2k6v_A 82 PERDPPEVADRYAKAFH-PSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLY 153 (172)
T ss_dssp TTTCCHHHHHHHHHHHC-TTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEE
T ss_pred CCCCCHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEE
Confidence 4 4678899999887 6788877765 578888774 5789999999 99999874
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-19 Score=156.95 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=103.6
Q ss_pred HHHhhccchhHHHHHhhcccccCCCC--CEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 36 RFLIMSLSQWYVQQLRRRMTSTKEIG--EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~~~~g--~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
.+.+|.++|+|+ +.+.+| +.+++++++||+++|+||++||++|+.++|.|++++++ + +++++|+
T Consensus 29 ~~~~G~~~P~f~--------l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~--v~vv~vs 94 (176)
T 3kh7_A 29 SALIGKPFPAFD--------LPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ----G--VVIYGIN 94 (176)
T ss_dssp TTTTTSBCCCCE--------EEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T--CEEEEEE
T ss_pred ccccCCcCCCcE--------ecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC----C--CEEEEEe
Confidence 346899999999 899999 88999999999999999999999999999999998876 3 9999999
Q ss_pred cCCCHHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 114 SDEDLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+|++.+.+.++++++++.... +.|.. ..+.+.|++.++|+++|||+ +|+++.+..
T Consensus 95 ~~d~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 150 (176)
T 3kh7_A 95 YKDDNAAAIKWLNELHNPYLLSISDAD--GTLGLDLGVYGAPETYLIDK---QGIIRHKIV 150 (176)
T ss_dssp ESCCHHHHHHHHHHTTCCCSEEEEETT--CHHHHHHTCCSSCEEEEECT---TCBEEEEEE
T ss_pred CCCCHHHHHHHHHHcCCCCceEEECCc--chHHHHcCCCCCCeEEEECC---CCeEEEEEc
Confidence 999999999999988754332 22333 68899999999999999999 999987643
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.2e-19 Score=149.00 Aligned_cols=121 Identities=17% Similarity=0.284 Sum_probs=102.1
Q ss_pred HHHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 36 RFLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
...+|..+|+|+ +.+.+|+.+++++ +||+++|+||++||++|+.++|.|.++++++++.+ +.++.|++|
T Consensus 8 ~~~~g~~~p~~~--------l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d 76 (145)
T 3erw_A 8 EEKQPAVPAVFL--------MKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS--VKLVTVNLV 76 (145)
T ss_dssp ----CCSCCEEE--------EECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSS--EEEEEEECG
T ss_pred cccCCCcCCCce--------eecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCC--EEEEEEEcc
Confidence 456899999999 9999999999999 99999999999999999999999999999997654 999999998
Q ss_pred C---CHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 116 E---DLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 116 ~---~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
. +.+.++++.+.+++....+.+.. ..+++.|++.++|+++++|+ +|+++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~~ 131 (145)
T 3erw_A 77 NSEQNQQVVEDFIKANKLTFPIVLDSK--GELMKEYHIITIPTSFLLNE---KGEIEKTK 131 (145)
T ss_dssp GGSSCHHHHHHHHHHTTCCSCEEECSS--SHHHHHTTCCEESEEEEECT---TCCEEEEE
T ss_pred CCcCCHHHHHHHHHHcCCceeEEEcCc--hhHHHhcCcCccCeEEEEcC---CCcEEEEE
Confidence 5 88999999987764322222333 68899999999999999999 99998654
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5e-18 Score=157.21 Aligned_cols=118 Identities=13% Similarity=0.154 Sum_probs=103.4
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCC-EEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.+|..+|+|++ +.+| .+++++++|| +++|+|| ++|||+|..+++.|.+++++|+++ +++||+||+|
T Consensus 4 ~iG~~aPdF~l~~~~G--~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~---------~v~vigIS~D 72 (233)
T 2v2g_A 4 TLGEVFPNFEADSTIG--KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKR---------GVKLIALSCD 72 (233)
T ss_dssp CTTCBCCCCEEEETTC--CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHT---------TEEEEEEESS
T ss_pred CCCCCCCCcEEecCCC--CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHc---------CCEEEEEcCC
Confidence 46899999999 8888 5999999998 9999998 899999999999999999999876 8999999998
Q ss_pred CCHHHHHHHHh------cCC-CcccccCCchhHHHHHhcCcC------------ceeeEEEECCCCcEEEcc
Q 013684 288 RDQTSFESYFG------TMP-WLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 288 ~~~~~~~~~~~------~~~-~~~~p~~~d~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~~ 340 (438)
. .+..++|++ ..+ .+.||+..|...++++.||+. .+|++||||++|+|+...
T Consensus 73 ~-~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~ 143 (233)
T 2v2g_A 73 N-VADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSI 143 (233)
T ss_dssp C-HHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEE
T ss_pred C-HHHHHHHHHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEE
Confidence 4 455666666 442 478999999999999999985 589999999999999874
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-18 Score=153.68 Aligned_cols=122 Identities=19% Similarity=0.241 Sum_probs=104.6
Q ss_pred HHhhhhcCCCCCcc----CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEE
Q 013684 208 LINLLTNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 282 (438)
Q Consensus 208 ~~~~~g~~~~~f~l----~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv 282 (438)
+...+|.++|||++ +.+++ +++|++++||+++|+|| +.|||.|..+++.+++.+++|++. +++|+
T Consensus 21 M~~~VG~~APdF~l~a~~d~~~~-~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~---------g~~vi 90 (216)
T 3sbc_A 21 MVAQVQKQAPTFKKTAVVDGVFD-EVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQ---------GAQVL 90 (216)
T ss_dssp -CCCTTSBCCCCCEEEEETTEEE-EECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHT---------TEEEE
T ss_pred chhhcCCcCCCCCCcceECCCCc-EEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccC---------CceEE
Confidence 44568999999986 55667 99999999999999999 899999999999999999999977 89999
Q ss_pred EEecCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 283 FVSTDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 283 ~is~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
+||+| +....++|.... ..+.||++.|.+.++++.|||- ..+.+||||++|+|++..
T Consensus 91 giS~D-s~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~ 159 (216)
T 3sbc_A 91 FASTD-SEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHIT 159 (216)
T ss_dssp EEESS-CHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred EeecC-chhhHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEE
Confidence 99998 555666666533 2478999999999999999982 468999999999998864
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=151.97 Aligned_cols=124 Identities=21% Similarity=0.217 Sum_probs=104.2
Q ss_pred Hhhccch-hHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCc-cchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 38 LIMSLSQ-WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 38 ~~g~~~p-~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
.+|.++| +|+ +.+.+|+.+++++++||+++|+||++||+ +|..++|.|+++++++++.+.++++|+|++|
T Consensus 2 ~~G~~~P~~f~--------l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d 73 (170)
T 3me7_A 2 SLGTYVPGDIT--------LVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFD 73 (170)
T ss_dssp CTTCBCCTTCE--------EEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECC
T ss_pred CCCCcCCCCeE--------EEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECC
Confidence 3799999 999 99999999999999999999999999998 6999999999999999875567999999998
Q ss_pred --CCHHHHHHhHhcCC-----cccccCCChHHHHHHhhhcC---------cCccceEEEecCCCCCCCccccc
Q 013684 116 --EDLNAFNNYRACMP-----WLAVPYSDLETKKALNRKFD---------IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 116 --~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~l~~~~~---------v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
++.+.+++|.++++ |..+...+.+....+++.|+ +...|+++|||+ +|+++...
T Consensus 74 ~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~---~G~i~~~~ 143 (170)
T 3me7_A 74 PKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSP---ELQIKDYI 143 (170)
T ss_dssp TTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECT---TSBEEEEE
T ss_pred CCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECC---CCeEEEEE
Confidence 57788899988765 33322235455578888866 456789999999 99998653
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-18 Score=148.96 Aligned_cols=121 Identities=20% Similarity=0.249 Sum_probs=102.6
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD- 115 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D- 115 (438)
.++|..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.+.|.|.++++++++.+ +.+++|+.|
T Consensus 2 ~~~G~~~p~~~--------l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~~ 71 (153)
T 2l5o_A 2 SLDSKTAPAFS--------LPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPI 71 (153)
T ss_dssp --CCTTCCSCE--------EECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTT--EEEEEEECTT
T ss_pred CCCCCCCCCcE--------eecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC--eEEEEEecCC
Confidence 35799999999 9999999999999999999999999999999999999999999998865 999999985
Q ss_pred CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 116 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
++.+.++++.+.+++......+.. ..+.+.|++.++|++++||+ +|+++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~i~~~P~~~lid~---~G~i~~~~ 123 (153)
T 2l5o_A 72 DPIESVRQYVKDYGLPFTVMYDAD--KAVGQAFGTQVYPTSVLIGK---KGEILKTY 123 (153)
T ss_dssp SCHHHHHHHHHHTTCCSEEEECSS--CHHHHHHTCCSSSEEEEECS---SSCCCEEE
T ss_pred CCHHHHHHHHHHcCCCceEEcCch--HHHHHHcCCCccCeEEEECC---CCcEEEEE
Confidence 567788889887764322222332 57899999999999999999 99987654
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-19 Score=157.76 Aligned_cols=120 Identities=14% Similarity=0.190 Sum_probs=102.6
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEecccc--CCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDL--EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~--~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
.+|+++|+|+ +.+.+|+.++|+++ +||+++|+|| ++|||+|+.++|.|+++++++++.| +++++||.
T Consensus 6 ~vG~~aPdF~--------l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~--v~vv~is~ 75 (164)
T 4gqc_A 6 ELGEKAPDFT--------LPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISV 75 (164)
T ss_dssp CTTSBCCCCE--------EEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSS--SEEEEEES
T ss_pred cCCCCCcCcE--------eECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccC--ceEEEecC
Confidence 4899999999 99999999999998 8999999888 9999999999999999999999876 99999999
Q ss_pred CCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC----------ccceEEEecCCCCCCCcccccc
Q 013684 115 DEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE----------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 115 D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~----------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
| +.+..+++.++++.......|.+ .++++.||+. ..|++||||+ +|+|++...
T Consensus 76 d-~~~~~~~~~~~~~~~fp~l~D~~--~~v~~~ygv~~~~~~~~~~~~~p~tflID~---~G~I~~~~~ 138 (164)
T 4gqc_A 76 D-SPWCLKKFKDENRLAFNLLSDYN--REVIKLYNVYHEDLKGLKMVAKRAVFIVKP---DGTVAYKWV 138 (164)
T ss_dssp S-CHHHHHHHHHHTTCCSEEEECTT--SHHHHHTTCEEEEETTEEEEECCEEEEECT---TSBEEEEEE
T ss_pred C-CHHHHHHHHHhcCcccceeecCc--hHHHHHcCCcccccccCcCCeeeEEEEECC---CCEEEEEEE
Confidence 7 66778888887664332233554 6899999984 4789999999 999987654
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-18 Score=153.48 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=101.5
Q ss_pred HhhccchhHHHHHhhcccccCC--CCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCE------EE
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKE--IGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDF------EV 109 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~--~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~------~i 109 (438)
..|.++|+|+ +.+. +|+.+++++++||++||+||++||++|+.++|.|.++++++++++ + ++
T Consensus 32 ~~g~~~p~f~--------l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~~~~~v~~ 101 (183)
T 3lwa_A 32 ADRQQLPDIG--------GDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAG--NGDTPGGTV 101 (183)
T ss_dssp GGCCCCCCCE--------EEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC-----CCSEEE
T ss_pred ccCCCCCcee--------ccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcC--CCccCCcEE
Confidence 4688899999 8999 999999999999999999999999999999999999999999876 6 99
Q ss_pred EEEecCC-CHHHHHHhHhcCCcccccCCChHHHHHHhhhc---CcCccceEEEecCCCCCCCcccccc
Q 013684 110 VFVSSDE-DLNAFNNYRACMPWLAVPYSDLETKKALNRKF---DIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 110 v~vs~D~-~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~---~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.|++|. +.+.++++.+++++....+.+.. ..+.+.| ++..+|+++|||+ +|+++.+..
T Consensus 102 v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 164 (183)
T 3lwa_A 102 LGINVRDYSRDIAQDFVTDNGLDYPSIYDPP--FMTAASLGGVPASVIPTTIVLDK---QHRPAAVFL 164 (183)
T ss_dssp EEEECSCCCHHHHHHHHHHTTCCSCEEECTT--CGGGGGTTTCCTTCCSEEEEECT---TSCEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHcCCCccEEECCc--chHHHHhccCCCCCCCeEEEECC---CCcEEEEEc
Confidence 9999998 88999999987654322222333 4555555 6899999999999 999987643
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-18 Score=148.37 Aligned_cols=108 Identities=16% Similarity=0.250 Sum_probs=91.2
Q ss_pred CCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCc--ccccCC
Q 013684 59 EIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPW--LAVPYS 136 (438)
Q Consensus 59 ~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~--~~~~~~ 136 (438)
.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++.+ +++++|++| +.+.+.++++.++. ..+..
T Consensus 12 ~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~--v~vv~v~~d-~~~~~~~~~~~~~~~~~~~~~- 87 (151)
T 3raz_A 12 KDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIALD-TSDNIGNFLKQTPVSYPIWRY- 87 (151)
T ss_dssp TTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTT--EEEEEEESS-CHHHHHHHHHHSCCSSCEEEE-
T ss_pred cCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC--eEEEEEECC-ChHHHHHHHHHcCCCCceEec-
Confidence 7999999999999999999999999999999999999999996654 999999997 56778899987653 33322
Q ss_pred ChHHHHHHhhhcC--cCccceEEEecCCCCCCCcccccc
Q 013684 137 DLETKKALNRKFD--IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 137 d~~~~~~l~~~~~--v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.......+.+.|+ +.++|+++|||+ +|+++.+..
T Consensus 88 ~~~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 123 (151)
T 3raz_A 88 TGANSRNFMKTYGNTVGVLPFTVVEAP---KCGYRQTIT 123 (151)
T ss_dssp CCSCHHHHHHTTTCCSCCSSEEEEEET---TTTEEEECC
T ss_pred CccchHHHHHHhCCccCCCCEEEEECC---CCcEEEEEC
Confidence 2222378999999 999999999999 999987643
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-18 Score=151.62 Aligned_cols=125 Identities=13% Similarity=0.156 Sum_probs=101.2
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCc-cchhhHHHHHHHHHHHhcCCCCEEEEEEecC-
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSD- 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D- 115 (438)
.+|..+|+|+ +.+.+|+.+++++++||+++|+||++||+ +|+.++|.|.++++++++.+.+++||+|++|
T Consensus 8 ~~g~~~p~f~--------l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~ 79 (174)
T 1xzo_A 8 PLNYEVEPFT--------FQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDP 79 (174)
T ss_dssp CCCEECCCCE--------EECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred ccccccCCcE--------EEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCC
Confidence 4789999999 99999999999999999999999999999 9999999999999999987656999999998
Q ss_pred --CCHHHHHHhHhcCCccc---ccCCC--hHHHHHHhh------------hcCcCccceEEEecCCCCCCCcccccc
Q 013684 116 --EDLNAFNNYRACMPWLA---VPYSD--LETKKALNR------------KFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 --~~~~~~~~~~~~~~~~~---~~~~d--~~~~~~l~~------------~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++.+.+++|.++++... ....+ ......+.. .|++..+|+++|||+ +|+++.+..
T Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~---~G~i~~~~~ 153 (174)
T 1xzo_A 80 ENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGP---DGKVLKDYN 153 (174)
T ss_dssp TTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECT---TSEEEEEEE
T ss_pred CCCCHHHHHHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECC---CCeEEEEEc
Confidence 57788999998776432 11123 221122221 146788999999999 999987643
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-18 Score=150.11 Aligned_cols=122 Identities=17% Similarity=0.165 Sum_probs=102.6
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEec-cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
+.+|.++|+|+ .+ +.+.+|+.+++++++||+++|+||+ +||++|+.++|.|+++++++++.| ++|++|+.|
T Consensus 7 l~~G~~~P~f~----~~--l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d 78 (163)
T 3gkn_A 7 AVLELPAATFD----LP--LSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAG--AKILGVSRD 78 (163)
T ss_dssp CCCCCCGGGGG----CC--EECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred cccCCcCCCcc----cc--ccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCC--CEEEEEeCC
Confidence 45789999887 11 5689999999999999999999998 999999999999999999999876 999999998
Q ss_pred CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCc------------cceEEEecCCCCCCCccccc
Q 013684 116 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG------------IPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~------------~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.+.+++|.++++.....+.|.+ ..+.+.|++.. +|+++|||+ +|+++...
T Consensus 79 -~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~---~G~i~~~~ 141 (163)
T 3gkn_A 79 -SVKSHDNFCAKQGFAFPLVSDGD--EALCRAFDVIKEKNMYGKQVLGIERSTFLLSP---EGQVVQAW 141 (163)
T ss_dssp -CHHHHHHHHHHHCCSSCEEECTT--CHHHHHTTCEEEEEETTEEEEEECCEEEEECT---TSCEEEEE
T ss_pred -CHHHHHHHHHHhCCCceEEECCc--HHHHHHhCCccccccccccccCcceEEEEECC---CCeEEEEE
Confidence 78888889886653322222433 68889999977 999999999 99998654
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-18 Score=155.80 Aligned_cols=125 Identities=9% Similarity=0.009 Sum_probs=95.1
Q ss_pred HHHHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 35 LRFLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 35 ~~~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
....+|..+|+|+ +.+.+|+.+++++++||+++|+||++|||+|+.++|.|+++++++++++ ++|++|++
T Consensus 21 ~~~~~g~~~p~f~--------l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--v~vv~vs~ 90 (181)
T 2p31_A 21 QSMQQEQDFYDFK--------AVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHH--FNVLAFPC 90 (181)
T ss_dssp ------CCGGGCE--------EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEEC
T ss_pred CcCCcCCccCceE--------eecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCC--EEEEEEEC
Confidence 3456899999999 9999999999999999999999999999999999999999999999876 99999998
Q ss_pred CC-------CHHHHHHhHhc-CCc--ccccCCChH--HHHHHhhhcCcCccc-------eEEEecCCCCCCCcccccc
Q 013684 115 DE-------DLNAFNNYRAC-MPW--LAVPYSDLE--TKKALNRKFDIEGIP-------CLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 115 D~-------~~~~~~~~~~~-~~~--~~~~~~d~~--~~~~l~~~~~v~~~P-------~~~lvd~~~~~G~v~~~~~ 173 (438)
|. +.+.++++.++ ++. ..+...+.. ....+ -.|.+..+| +++|||+ +|+++.+..
T Consensus 91 d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~~~~~~-~~~~~~~~P~~~~~~~~~~lid~---~G~i~~~~~ 164 (181)
T 2p31_A 91 NQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPA-FKYLAQTSGKEPTWNFWKYLVAP---DGKVVGAWD 164 (181)
T ss_dssp CCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTTSCHH-HHHHHHHHSCCCCSTTCEEEECT---TSCEEEEEC
T ss_pred cCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCccchhh-hhhhhhcCCCccccceeEEEEcC---CCCEEEEeC
Confidence 74 67788888876 443 222111211 00111 135577889 9999999 999987643
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-18 Score=157.43 Aligned_cols=115 Identities=7% Similarity=0.046 Sum_probs=101.3
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCC-Chhhh-----hhhHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCE-----KFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 283 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~w-C~~C~-----~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~ 283 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+||+.| ||+|. .+++.|.++ | . +++||+
T Consensus 23 ~vG~~APdFtL~d~~G~-~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~---------gv~Vvg 87 (224)
T 3keb_A 23 RKGDYLPSFMLVDDQKH-DAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--P---------HLKLIV 87 (224)
T ss_dssp CTTCBCCCCEEEETTSC-EEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--T---------TSEEEE
T ss_pred CCCCCCCCeEEECCCCC-EEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--C---------CCEEEE
Confidence 36889999999 99999 99999999999999999988 99999 888888776 4 3 689999
Q ss_pred EecCCCHHHHHHHHhcCCCcccccCCch-hHHHHHhcCcCc---------eeeEEEECCCCcEEEccc
Q 013684 284 VSTDRDQTSFESYFGTMPWLALPFGDPT-IKELTKYFDVQG---------IPCLVIIGPEGKTVTKQG 341 (438)
Q Consensus 284 is~d~~~~~~~~~~~~~~~~~~p~~~d~-~~~l~~~~~v~~---------~P~~~lid~~G~i~~~~~ 341 (438)
||.| +....++|.++++.-.||++.|. ...+++.||+.. +|++||||++|+|++...
T Consensus 88 IS~D-s~~~~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~ 154 (224)
T 3keb_A 88 ITVD-SPSSLARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSER 154 (224)
T ss_dssp EESS-CHHHHHHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEE
T ss_pred EECC-CHHHHHHHHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEe
Confidence 9998 56788899998884379999997 699999999964 799999999999998853
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-18 Score=156.49 Aligned_cols=123 Identities=9% Similarity=0.072 Sum_probs=97.1
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC--
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-- 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-- 115 (438)
..+.++|+|+ +.+.+|+.+++++++||+|||+||++||++|+.++|.|+++++++++++ ++||+|++|
T Consensus 21 ~~~~~~p~f~--------l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d~~ 90 (187)
T 3dwv_A 21 SAASSIFDFE--------VLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPSNQF 90 (187)
T ss_dssp TTCCSGGGSC--------CBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGT--CEEEEEEBCCC
T ss_pred cCCCccCCeE--------EEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCC--eEEEEEECccc
Confidence 3578899999 9999999999999999999999999999999999999999999999876 999999998
Q ss_pred -----CCHHHHHHhHhc-CC--cccccCCChH--HHHHH--------hhhcCcCccc---eEEEecCCCCCCCcccccc
Q 013684 116 -----EDLNAFNNYRAC-MP--WLAVPYSDLE--TKKAL--------NRKFDIEGIP---CLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 -----~~~~~~~~~~~~-~~--~~~~~~~d~~--~~~~l--------~~~~~v~~~P---~~~lvd~~~~~G~v~~~~~ 173 (438)
.+.+++++++++ ++ |..+...|.. ....+ ...|++..+| +++|||+ +|+++.+..
T Consensus 91 ~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~---~G~i~~~~~ 166 (187)
T 3dwv_A 91 GGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDR---DGVPVERFS 166 (187)
T ss_dssp SSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECT---TSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECC---CCCEEEEEC
Confidence 467888888883 34 3322100111 00111 1445777888 9999999 999987743
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-18 Score=153.80 Aligned_cols=118 Identities=15% Similarity=0.055 Sum_probs=99.0
Q ss_pred hhcc----chhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 39 IMSL----SQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 39 ~g~~----~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
+|+. +|+|+ +.+.+|+.++|++++||+++|+|| ++||++|+.++|.|+++++++++.| ++|++|+
T Consensus 23 ~Gd~ig~~aP~f~--------l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~--~~vv~Vs 92 (179)
T 3ixr_A 23 IGDTLNHSLLNHP--------LMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQIN--ATVLGVS 92 (179)
T ss_dssp TTCBCCHHHHHCC--------EEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEE
T ss_pred cCcccCCcCCCee--------EECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEc
Confidence 5555 99999 999999999999999999999998 9999999999999999999999876 9999999
Q ss_pred cCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCc------------cceEEEecCCCCCCCccccc
Q 013684 114 SDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG------------IPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 114 ~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~------------~P~~~lvd~~~~~G~v~~~~ 172 (438)
.| +.+..++|.++++.....+.|.+ ..+++.|++.. .|+++|||+ +|+++...
T Consensus 93 ~D-~~~~~~~~~~~~~~~f~~l~D~~--~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~---~G~I~~~~ 157 (179)
T 3ixr_A 93 RD-SVKSHDSFCAKQGFTFPLVSDSD--AILCKAFDVIKEKTMYGRQVIGIERSTFLIGP---THRIVEAW 157 (179)
T ss_dssp SC-CHHHHHHHHHHHTCCSCEEECTT--CHHHHHTTCEEEECCC--CEEEECCEEEEECT---TSBEEEEE
T ss_pred CC-CHHHHHHHHHHcCCceEEEECCc--hHHHHHcCCcccccccCcccCCcceEEEEECC---CCEEEEEE
Confidence 98 56678888876553322222433 68889999853 689999999 99998764
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-18 Score=149.66 Aligned_cols=125 Identities=9% Similarity=0.055 Sum_probs=94.7
Q ss_pred HHHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 36 RFLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
...+|..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++++ +++++|++|
T Consensus 4 ~~~~g~~~p~f~--------l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d 73 (169)
T 2v1m_A 4 SHKSWNSIYEFT--------VKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKG--LRILAFPCN 73 (169)
T ss_dssp ---CCCSGGGCE--------EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECC
T ss_pred cccCCcccccce--------eecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCC--eEEEEEECC
Confidence 345799999999 9999999999999999999999999999999999999999999998875 999999987
Q ss_pred C-------CHHHHHHh-HhcCC--cccccCCChH--HHHHHh-----hhcC-----cCccceEEEecCCCCCCCcccccc
Q 013684 116 E-------DLNAFNNY-RACMP--WLAVPYSDLE--TKKALN-----RKFD-----IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ~-------~~~~~~~~-~~~~~--~~~~~~~d~~--~~~~l~-----~~~~-----v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
. +.+.+.++ .++++ |..+...|.. ....+. ..++ +.++|+++|||+ +|+++.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~---~G~i~~~~~ 150 (169)
T 2v1m_A 74 QFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDR---QGQPVKRYS 150 (169)
T ss_dssp CSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECT---TSCEEEEEC
T ss_pred ccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECC---CCCEEEEcC
Confidence 3 56778888 36443 3322101211 001111 1124 566799999999 999987743
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-18 Score=151.36 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=86.1
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC---
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD--- 115 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D--- 115 (438)
-|+.+|+|+ +++.+|+.+++++++||+++|+|||+||++|+ ++|.|+++++++++.+ ++|++|++|
T Consensus 8 ~~~~~~~f~--------l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~--v~vv~vs~d~~~ 76 (171)
T 3cmi_A 8 HMSEFYKLA--------PVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEG--FTIIGFPCNQFG 76 (171)
T ss_dssp --CGGGGCC--------CBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGT--EEEEEEEECSCC
T ss_pred chhheeeeE--------EEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCC--eEEEEEECcccC
Confidence 367789999 99999999999999999999999999999999 9999999999999875 999999986
Q ss_pred ----CCHHHHHHhH-hcCC--cccccCCChH-------HHHHHhhhcCcCccc------eEEEecCCCCCCCcccccc
Q 013684 116 ----EDLNAFNNYR-ACMP--WLAVPYSDLE-------TKKALNRKFDIEGIP------CLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ----~~~~~~~~~~-~~~~--~~~~~~~d~~-------~~~~l~~~~~v~~~P------~~~lvd~~~~~G~v~~~~~ 173 (438)
++.+.++++. ++++ |..+...+.. ...-..+.|++.++| +++|||+ +|+++.+..
T Consensus 77 ~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~---~G~i~~~~~ 151 (171)
T 3cmi_A 77 HQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDK---KGKVYERYS 151 (171)
T ss_dssp ------------------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECS---SSCEEEEEC
T ss_pred CCCCCCHHHHHHHHHhccCCCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECC---CCCEEEEeC
Confidence 4566778888 6544 3332211111 101112468999999 9999999 999987743
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-18 Score=151.26 Aligned_cols=122 Identities=11% Similarity=0.052 Sum_probs=95.2
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC-
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE- 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~- 116 (438)
..|..+|+|+ +.+.+|+.+++++++||+|||+||++|||+|+.++|.|+++++++++++ ++|++|++|.
T Consensus 13 ~~~~~~p~f~--------l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d~~ 82 (180)
T 3kij_A 13 PKINSFYAFE--------VKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSH--FSVLAFPCNQF 82 (180)
T ss_dssp CCCCCGGGCE--------EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTS--EEEEEEECCCS
T ss_pred CCcCcccceE--------EecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCC--eEEEEEECCcc
Confidence 3578899999 9999999999999999999999999999999999999999999998876 9999999874
Q ss_pred ------CHHHHHHhHhc-CCcccccCC-----ChHHHHHHhhhc--CcCccce----EEEecCCCCCCCcccccc
Q 013684 117 ------DLNAFNNYRAC-MPWLAVPYS-----DLETKKALNRKF--DIEGIPC----LVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ------~~~~~~~~~~~-~~~~~~~~~-----d~~~~~~l~~~~--~v~~~P~----~~lvd~~~~~G~v~~~~~ 173 (438)
+.+.++++.++ ++.....+. .... ..+...+ .+.++|+ ++|||+ +|+++.+..
T Consensus 83 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~~~p~~~~~~~lid~---~G~i~~~~~ 153 (180)
T 3kij_A 83 GESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEG-EPAFRFLVDSSKKEPRWNFWKYLVNP---EGQVVKFWR 153 (180)
T ss_dssp TTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTTC-CHHHHHHHHHHTCCCSSTTCEEEECT---TSCEEEEEC
T ss_pred ccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCccc-cHHHHHHHhcCCCCccccceEEEECC---CCCEEEEEC
Confidence 88889999887 553221111 1110 0111111 1236888 999999 999987754
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=153.63 Aligned_cols=117 Identities=12% Similarity=0.215 Sum_probs=100.0
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCC--EEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGK--TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk--~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.+|..+|+|++ +.+| .+++++++|| +||++||++|||+|..+++.|.+++++|+++ +++||+||+|
T Consensus 6 ~~G~~aP~F~l~~~~G--~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~---------~v~vi~IS~D 74 (224)
T 1prx_A 6 LLGDVAPNFEANTTVG--RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR---------NVKLIALSID 74 (224)
T ss_dssp CTTCBCCCCEEEETTE--EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT---------TEEEEEEESS
T ss_pred CCcCCCCCcEEecCCC--CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHC---------CCEEEEEcCC
Confidence 46899999999 8888 6999999997 5666678999999999999999999999865 8999999998
Q ss_pred CCHHHHHHHHhc----------CCCcccccCCchhHHHHHhcCcC------------ceeeEEEECCCCcEEEcc
Q 013684 288 RDQTSFESYFGT----------MPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 288 ~~~~~~~~~~~~----------~~~~~~p~~~d~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~~ 340 (438)
. .+..++|.+. .+ +.||+..|...++++.||+. .+|++||||++|+|+...
T Consensus 75 ~-~~~~~~~~~~i~~~~~~~~~~~-~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~ 147 (224)
T 1prx_A 75 S-VEDHLAWSKDINAYNSEEPTEK-LPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSI 147 (224)
T ss_dssp C-HHHHHHHHHHHHHHTTSCCCSC-CSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEE
T ss_pred C-HHHHHHHHHHHHHhhCcccccC-cCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEE
Confidence 5 4455555553 33 78999999889999999984 479999999999999874
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-18 Score=149.83 Aligned_cols=118 Identities=15% Similarity=0.221 Sum_probs=99.6
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
.+|..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++.+ +.++.|+.|..
T Consensus 16 ~~G~~~p~f~--------l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~ 85 (158)
T 3hdc_A 16 RTGALAPNFK--------LPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVEKR 85 (158)
T ss_dssp CTTSBCCCCE--------EECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTS--EEEEEEECSSS
T ss_pred CCCCcCCCce--------eEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCC--eEEEEEeCCHH
Confidence 4799999999 9999999999999999999999999999999999999999999998654 99999999873
Q ss_pred HHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 118 LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.++.+.+++....+.+.. ..+.+.|++.++|+++|||+ +|+++.+..
T Consensus 86 ---~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 133 (158)
T 3hdc_A 86 ---FPEKYRRAPVSFNFLSDAT--GQVQQRYGANRLPDTFIVDR---KGIIRQRVT 133 (158)
T ss_dssp ---CCGGGGGCCCSCEEEECTT--SHHHHHTTCCSSSEEEEECT---TSBEEEEEE
T ss_pred ---HHHHHHHcCCCceEEECch--HHHHHHhCCCCcceEEEEcC---CCCEEEEEe
Confidence 5566665553322222333 68899999999999999999 999987654
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=145.22 Aligned_cols=120 Identities=20% Similarity=0.284 Sum_probs=100.7
Q ss_pred cchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCcc-chhhHHHHHHHHHHHhcC--CCCEEEEEEecCC--
Q 013684 42 LSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNN--GSDFEVVFVSSDE-- 116 (438)
Q Consensus 42 ~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~--~~~~~iv~vs~D~-- 116 (438)
.+|+|+ +.+.+|+.+++++++||+++|+||++||++ |+.++|.|+++++++++. ..++++++|++|.
T Consensus 2 ~ap~f~--------l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~ 73 (164)
T 2ggt_A 2 LGGPFS--------LTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPER 73 (164)
T ss_dssp CCCCCE--------EEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTT
T ss_pred CCCCeE--------EEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCC
Confidence 356777 899999999999999999999999999998 999999999999999872 1259999999985
Q ss_pred -CHHHHHHhHhcCC--cccccCCChHHHHHHhhhcCcCccc---------------eEEEecCCCCCCCcccccc
Q 013684 117 -DLNAFNNYRACMP--WLAVPYSDLETKKALNRKFDIEGIP---------------CLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 -~~~~~~~~~~~~~--~~~~~~~d~~~~~~l~~~~~v~~~P---------------~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+.+++|.+.++ |..+.. +.+....+.+.|++..+| +++|||+ +|+++.+..
T Consensus 74 d~~~~~~~~~~~~~~~~~~l~~-~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~---~G~i~~~~~ 144 (164)
T 2ggt_A 74 DTKEAIANYVKEFSPKLVGLTG-TREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGP---DGEFLDYFG 144 (164)
T ss_dssp CCHHHHHHHHHTTCSSCEEEEC-CHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECT---TSCEEEEEE
T ss_pred CCHHHHHHHHHHcCCCeEEEeC-CHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECC---CCeEEEEeC
Confidence 4778889988765 444432 345557899999999999 8999999 999987643
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-18 Score=152.78 Aligned_cols=121 Identities=18% Similarity=0.232 Sum_probs=101.4
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
.+|..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++.+ +++++|++|.+
T Consensus 35 ~~g~~~p~f~--------l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~ 104 (186)
T 1jfu_A 35 SAPLKLPDLA--------FEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTR 104 (186)
T ss_dssp CSCCBCCCCE--------EECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCS
T ss_pred cCCCcCCCcE--------eEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCC--cEEEEEECCCC
Confidence 3578889999 8999999999999999999999999999999999999999999998654 99999999864
Q ss_pred -HHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcC----ccceEEEecCCCCCCCcccccc
Q 013684 118 -LNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIE----GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 118 -~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~----~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.+.++++.++++...++ +.|.. ..+.+.|++. ++|+++|||+ +|+++.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~P~~~lid~---~G~i~~~~~ 161 (186)
T 1jfu_A 105 DPEKPKTFLKEANLTRLGYFNDQK--AKVFQDLKAIGRALGMPTSVLVDP---QGCEIATIA 161 (186)
T ss_dssp CTTHHHHHHHHTTCCTTCCEECTT--CHHHHHHHTTTCCSSSSEEEEECT---TSBEEEEEE
T ss_pred CHHHHHHHHHHcCCCCCceEECCc--chHHHHhccccccCCCCEEEEECC---CCCEEEEEe
Confidence 56788888877653232 22333 5777888875 8999999999 999987643
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-18 Score=152.83 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=102.2
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC--
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-- 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-- 115 (438)
.+|..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|.+++++++++ +++++|+.|
T Consensus 8 ~~g~~~p~f~--------l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---~~~v~v~~d~~ 76 (188)
T 2cvb_A 8 PLESPLIDAE--------LPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDY 76 (188)
T ss_dssp CTTCBCCCCE--------EECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCT
T ss_pred CCCCCCCCce--------eecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC---eEEEEEEcCcc
Confidence 4789999999 899999999999999999999999999999999999999999998753 999999996
Q ss_pred -----CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 116 -----EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 116 -----~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
++.+.++++.+++++....+.|.. ..+.+.|++.++|+++|||+ +|+++.++
T Consensus 77 ~~~~~d~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~g 133 (188)
T 2cvb_A 77 EKYPEDAPEKMAAFAEEHGIFFPYLLDET--QEVAKAYRALRTPEVFLFDE---RRLLRYHG 133 (188)
T ss_dssp TTCGGGSHHHHHHHHHHHTCCSCEEECSS--SHHHHHTTCCEESEEEEECT---TCBEEEEE
T ss_pred ccccccCHHHHHHHHHHhCCCceEEECCc--chHHHHcCCCCCCeEEEECC---CCcEEEEE
Confidence 577888888887654322222333 67889999999999999999 99998773
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=147.53 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=98.6
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCc-cchhhHHHHHHHHHHHhcCCCCEEEEEEecC--
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-- 115 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-- 115 (438)
+|.++|+|+ ++|.+|+.+++++++||+|+|+||++||+ +|...++.|.++++.+++.+.++++|+||+|
T Consensus 8 ~~~~~PdF~--------L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 8 LNWDLETFQ--------FTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp CCBCCCCCE--------EECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CCCcCCCcE--------EECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 688899999 99999999999999999999999999997 8999999999999999988778999999998
Q ss_pred -CCHHHHHHhHhcCC-----cccccCCChHHHHH-Hhhhc----------CcCccceEEEecCCCCCCCccccc
Q 013684 116 -EDLNAFNNYRACMP-----WLAVPYSDLETKKA-LNRKF----------DIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 116 -~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~-l~~~~----------~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
++++.+++|.+.++ |..+...+...... ....| .+.+.|+++|||+ +|+++...
T Consensus 80 ~Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~---~G~i~~~~ 150 (170)
T 4hde_A 80 LDKPENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQ---NGKVMKKY 150 (170)
T ss_dssp TCCHHHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECT---TSCEEEEE
T ss_pred cccHHHHHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcC---CCeEEEEE
Confidence 46788888888653 54444323221122 22223 3456789999999 99998653
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=152.54 Aligned_cols=117 Identities=12% Similarity=0.175 Sum_probs=98.5
Q ss_pred hhhcCCCCCcc-CC--CCCceeeccccCCC-E-EEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 211 LLTNHDRGYLL-GH--PPDEKVPVSSLVGK-T-VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 211 ~~g~~~~~f~l-~~--~g~~~~~l~~~~gk-~-vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
.+|..+|+|++ +. +| .+++++++|| + ||++||++|||+|..+++.|.+++++|+++ +++||+||
T Consensus 4 ~iG~~aP~F~l~~~~~~G--~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~---------~v~vi~vS 72 (220)
T 1xcc_A 4 HLGATFPNFTAKASGIDG--DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL---------NCKLIGFS 72 (220)
T ss_dssp CTTCBCCCCEECBTTCSS--CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT---------TEEEEEEE
T ss_pred CCCCCCCCcEeecccCCC--cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHc---------CCEEEEEe
Confidence 46899999999 77 67 5999999998 4 555568999999999999999999999865 89999999
Q ss_pred cCCCHHHHHHHHh-------cCCCcccccCCchhHHHHHhcCcC------------ceeeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFG-------TMPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~-------~~~~~~~p~~~d~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~~ 340 (438)
+|. .+..++|.+ ..+ +.||+..|...++++.||+. .+|++||||++|+|+...
T Consensus 73 ~D~-~~~~~~~~~~i~~~~~~~~-~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~ 144 (220)
T 1xcc_A 73 CNS-KESHDKWIEDIKYYGKLNK-WEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATV 144 (220)
T ss_dssp SSC-HHHHHHHHHHHHHHHTCSC-CCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEE
T ss_pred CCC-HHHHHHHHHHHHHHhcCCC-CcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEE
Confidence 985 444455554 333 78999999999999999983 479999999999999874
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-18 Score=149.42 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=103.2
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCC-EEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGK-VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
.+|..+|+|+ +.+.+|+.+++++++|| +++|+|| ++||++|+.++|.|.++++++++.+ +++++|++|
T Consensus 10 ~~G~~~p~f~--------l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vv~is~d 79 (160)
T 1xvw_A 10 NVGATAPDFT--------LRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD--SAALAISVG 79 (160)
T ss_dssp CTTSBCCCCE--------EECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS--EEEEEEESC
T ss_pred CCCCCCCCeE--------eEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--cEEEEEeCC
Confidence 4799999999 89999999999999998 9999998 9999999999999999999998754 999999998
Q ss_pred CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC----ccc--eEEEecCCCCCCCcccccc
Q 013684 116 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE----GIP--CLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~----~~P--~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+.++++.+++++....+.|......+.+.|++. ++| +++|||+ +|+++.+..
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~---~G~i~~~~~ 139 (160)
T 1xvw_A 80 -PPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDR---SGIIRFAEM 139 (160)
T ss_dssp -CHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECT---TSBEEEEEE
T ss_pred -CHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECC---CCeEEEEEe
Confidence 56788888887665322222420126789999998 999 9999999 999987754
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-18 Score=151.26 Aligned_cols=120 Identities=22% Similarity=0.230 Sum_probs=102.0
Q ss_pred HhhccchhHHHHHhhcccccCCCCC----EEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEE
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGE----EVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 112 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~----~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~v 112 (438)
.+|..+|+|+ +.+.+|+ .+++++++||+++|+|| ++||++|+.++|.|.++++++++.+ +++++|
T Consensus 2 ~~G~~~P~f~--------l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~v 71 (187)
T 1we0_A 2 LIGTEVQPFR--------AQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSV 71 (187)
T ss_dssp CTTCBCCCCE--------EEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CCCCcCCCeE--------EeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcC--CEEEEE
Confidence 3789999999 8999999 99999999999999999 9999999999999999999998865 999999
Q ss_pred ecCCCHHHHHHhHhcC----CcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 113 SSDEDLNAFNNYRACM----PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 113 s~D~~~~~~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++|. .+..++|.+.+ ++....+.|.. ..+.+.|++. .+|+++|||+ +|+++.+..
T Consensus 72 s~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~~~g~~~P~~~lid~---~G~i~~~~~ 136 (187)
T 1we0_A 72 STDT-HFVHKAWHENSPAVGSIEYIMIGDPS--QTISRQFDVLNEETGLADRGTFIIDP---DGVIQAIEI 136 (187)
T ss_dssp ESSC-HHHHHHHHHSCHHHHTCCSEEEECTT--CHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEEE
T ss_pred ECCC-HHHHHHHHHHhccccCCCceEEECCc--hHHHHHhCCCcCCCCceeeEEEEECC---CCeEEEEEe
Confidence 9985 56677777766 33222222433 6888999998 9999999999 999987754
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-19 Score=155.12 Aligned_cols=122 Identities=20% Similarity=0.262 Sum_probs=103.3
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHH-HHHHHh-cCCCCEEEEEEec
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVD-VYEELR-NNGSDFEVVFVSS 114 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~-l~~~~~-~~~~~~~iv~vs~ 114 (438)
+.+|..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|.+ ++++++ .. ++.++.|++
T Consensus 7 l~~g~~~p~f~--------l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~--~~~vv~v~~ 76 (159)
T 2ls5_A 7 VRIGEMAPDFT--------ITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNA--DFALIGIDR 76 (159)
Confidence 45799999999 8999999999999999999999999999999999999998 999987 43 499999999
Q ss_pred CCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC--cCccceEEEecCCCCCCCcccccc
Q 013684 115 DEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD--IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 115 D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.+.+.++++.+++++....+.|.. ..+.+.|+ +.++|+++|||+ +|+++.+..
T Consensus 77 d~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~P~~~lid~---~G~i~~~~~ 132 (159)
T 2ls5_A 77 DEPLEKVLAFAKSTGVTYPLGLDPG--ADIFAKYALRDAGITRNVLIDR---EGKIVKLTR 132 (159)
Confidence 9887788888887765322232433 78899999 456999999999 999987643
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=146.42 Aligned_cols=124 Identities=12% Similarity=0.142 Sum_probs=95.3
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD- 115 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D- 115 (438)
..+|..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++++ ++|++|++|
T Consensus 6 ~~~g~~~p~f~--------l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~vs~d~ 75 (170)
T 2p5q_A 6 SKNPESVHDFT--------VKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQG--LEILAFPCNQ 75 (170)
T ss_dssp ----CCGGGCE--------EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCT
T ss_pred CCCCccccceE--------EEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCC--EEEEEEECCC
Confidence 35799999999 9999999999999999999999999999999999999999999998875 999999997
Q ss_pred ------CCHHHHHHhHh-cCC--cccccCCChHH--HHHHh-----hhcCc--Cccc---eEEEecCCCCCCCcccccc
Q 013684 116 ------EDLNAFNNYRA-CMP--WLAVPYSDLET--KKALN-----RKFDI--EGIP---CLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ------~~~~~~~~~~~-~~~--~~~~~~~d~~~--~~~l~-----~~~~v--~~~P---~~~lvd~~~~~G~v~~~~~ 173 (438)
++.+.++++.+ .++ |..+...|... ...+. ..+++ ..+| +++|||+ +|+++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~---~G~i~~~~~ 151 (170)
T 2p5q_A 76 FGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNK---DGQVVDRYY 151 (170)
T ss_dssp TTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECT---TSCEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECC---CCCEEEeeC
Confidence 36778888887 444 33221112210 01111 23466 7788 9999999 999987743
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=152.63 Aligned_cols=123 Identities=13% Similarity=0.027 Sum_probs=94.3
Q ss_pred HhhccchhHHHHHhhcccccCCC-CCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEI-GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD- 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~-g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D- 115 (438)
..+..+|+|+ +.+.+ |+.+++++++||+|||+|||+|||+|+.++|.|+++++++++.| ++||+|++|
T Consensus 21 ~~~~~~p~f~--------l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g--~~vv~v~~d~ 90 (208)
T 2f8a_A 21 QSMQSVYAFS--------ARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQ 90 (208)
T ss_dssp -CCCCGGGCE--------ECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCC
T ss_pred hhcCccCceE--------eeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCC--eEEEEEECCc
Confidence 3567899999 89999 99999999999999999999999999999999999999999876 999999987
Q ss_pred ------CCHHHHHHhHh------cCCcccccCC--Ch--H----HHHHHhhhc-------------------------Cc
Q 013684 116 ------EDLNAFNNYRA------CMPWLAVPYS--DL--E----TKKALNRKF-------------------------DI 150 (438)
Q Consensus 116 ------~~~~~~~~~~~------~~~~~~~~~~--d~--~----~~~~l~~~~-------------------------~v 150 (438)
.+.+++++|++ +++..+..+. +. . .-..+...+ ++
T Consensus 91 ~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 170 (208)
T 2f8a_A 91 FGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDV 170 (208)
T ss_dssp STTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCC
T ss_pred ccccCCCCHHHHHHHHHhcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCcc
Confidence 24577888886 5543221111 10 0 001122122 36
Q ss_pred CccceEEEecCCCCCCCcccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.+.|+++|||+ +|+++.+..
T Consensus 171 ~~~p~tflID~---~G~i~~~~~ 190 (208)
T 2f8a_A 171 AWNFEKFLVGP---DGVPLRRYS 190 (208)
T ss_dssp CSTTCEEEECT---TSCEEEEEC
T ss_pred ccCceEEEEcC---CCcEEEEeC
Confidence 67799999999 999987754
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.1e-18 Score=156.14 Aligned_cols=121 Identities=13% Similarity=0.155 Sum_probs=101.1
Q ss_pred HHhhccchhHHHHHhhcccccCC--CC--CEEecccc-CCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEE
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKE--IG--EEVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVV 110 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~--~g--~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv 110 (438)
+.+|..+|+|+ +.+. +| +.++++++ +||++||+|| ++||++|+.++|.|++++++|++.+ ++||
T Consensus 25 l~~G~~aP~F~--------l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~--v~vv 94 (221)
T 2c0d_A 25 SLVTKKAYNFT--------AQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKN--VELL 94 (221)
T ss_dssp -CTTSBCCCCE--------EEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTT--EEEE
T ss_pred CCCCCCCCCeE--------EeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEE
Confidence 56899999999 8888 89 99999999 9999999999 9999999999999999999998865 9999
Q ss_pred EEecCCCHHHHHHhHhcC-------CcccccCCChHHHHHHhhhcCc-----CccceEEEecCCCCCCCcccccc
Q 013684 111 FVSSDEDLNAFNNYRACM-------PWLAVPYSDLETKKALNRKFDI-----EGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 111 ~vs~D~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~v-----~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+|++| +.+..++|.+.. ++....+.|.. ..+.+.|++ ..+|+++|||+ +|+|+....
T Consensus 95 ~Is~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~--~~~~~~ygv~~~~g~~~P~~~lID~---~G~I~~~~~ 163 (221)
T 2c0d_A 95 GISVD-SVYSHLAWKNMPIEKGGIGNVEFTLVSDIN--KDISKNYNVLYDNSFALRGLFIIDK---NGCVRHQTV 163 (221)
T ss_dssp EEESS-CHHHHHHHHHSCGGGTCCCSCSSEEEECTT--SHHHHHTTCEETTTEECEEEEEECT---TSBEEEEEE
T ss_pred EEeCC-CHHHHHHHHHHhhhhcCccCCceEEEECCc--hHHHHHcCCcccCCCccceEEEECC---CCeEEEEEe
Confidence 99997 456677777765 22111122433 688999999 47999999999 999998754
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.4e-18 Score=150.32 Aligned_cols=125 Identities=11% Similarity=0.042 Sum_probs=98.3
Q ss_pred HHHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 36 RFLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
...+|..+|+|+ +++.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++++ ++|++|++|
T Consensus 20 ~~~~g~~~p~f~--------l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d 89 (183)
T 2obi_A 20 DWRCARSMHEFS--------AKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECG--LRILAFPCN 89 (183)
T ss_dssp CGGGCCSGGGCE--------EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECC
T ss_pred CCcccCcccceE--------EEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCC--eEEEEEECC
Confidence 345899999999 9999999999999999999999999999999999999999999999875 999999987
Q ss_pred -------CCHHHHHHhHhcCCcccccCC--ChH--HHHHHhhhc-------C-----cCccceEEEecCCCCCCCccccc
Q 013684 116 -------EDLNAFNNYRACMPWLAVPYS--DLE--TKKALNRKF-------D-----IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 116 -------~~~~~~~~~~~~~~~~~~~~~--d~~--~~~~l~~~~-------~-----v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
++.+.++++.+++++....+. |.. ....+.+.+ + +..+|+++|||+ +|+++.+.
T Consensus 90 ~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~---~G~i~~~~ 166 (183)
T 2obi_A 90 QFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK---NGCVVKRY 166 (183)
T ss_dssp CSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECT---TSCEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECC---CCCEEEEe
Confidence 367889999887754322221 211 001122111 3 455799999999 99998764
Q ss_pred c
Q 013684 173 G 173 (438)
Q Consensus 173 ~ 173 (438)
.
T Consensus 167 ~ 167 (183)
T 2obi_A 167 G 167 (183)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=154.23 Aligned_cols=117 Identities=12% Similarity=0.129 Sum_probs=99.8
Q ss_pred hhhcCCCCCcc-CCCCCceeec-ccc--CCCE-EEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPV-SSL--VGKT-VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l-~~~--~gk~-vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
.+|..+|+|++ +.+| .+++ +++ +||+ ||++||++||++|..+++.|.+++++|+++ +++||+||
T Consensus 6 ~iG~~aPdF~l~~~~G--~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~---------gv~VI~VS 74 (249)
T 3a2v_A 6 LIGERFPEMEVTTDHG--VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL---------GVDLIGLS 74 (249)
T ss_dssp CTTSBCCCEEEEETTE--EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHT---------TEEEEEEE
T ss_pred CCCCCCCCeEEEcCCC--CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhC---------CcEEEEEE
Confidence 47899999999 8887 5999 999 9996 556789999999999999999999999876 89999999
Q ss_pred cCCCHHHHHHHHhc------CCCcccccCCchhHHHHHhcCcC-------ceeeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFGT------MPWLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~~------~~~~~~p~~~d~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~ 340 (438)
+|.. ....+|.+. . .+.||+..|...++++.||+. ++|++||||++|+|+...
T Consensus 75 ~Ds~-~~~~~w~~~~~~~~~~-~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~ 140 (249)
T 3a2v_A 75 VDSV-FSHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTML 140 (249)
T ss_dssp SSCH-HHHHHHHHHHHHHTCC-CCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEE
T ss_pred CCCH-HHHHHHHHHHHHhcCC-CCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEE
Confidence 9853 333334332 3 378999999999999999997 899999999999999874
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-18 Score=154.39 Aligned_cols=121 Identities=13% Similarity=0.182 Sum_probs=103.5
Q ss_pred HhhccchhHHHHHhhccccc-CCCCCEEeccccCCC-EEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 38 LIMSLSQWYVQQLRRRMTST-KEIGEEVKVSDLEGK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~-~~~g~~v~l~~~~gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
.+|..+|+|+ +. +.+|+.+++++++|| +++|+||++||++|+.++|.|+++++++++++ +++++|++|
T Consensus 19 ~~g~~~p~f~--------l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~v~~d 88 (196)
T 2ywi_A 19 PLGKQAPPFA--------LTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKG--VSFVAINSN 88 (196)
T ss_dssp CTTCBCCCCE--------EEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGT--CEEEEEECS
T ss_pred CcCCcCCcee--------eeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCC--cEEEEEECC
Confidence 4789999999 99 999999999999998 59999999999999999999999999998865 999999997
Q ss_pred -------CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 116 -------EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 -------~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++.+.++++.+++++....+.|.. ..+.+.|++..+|+++|||+ +|+++.+..
T Consensus 89 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 148 (196)
T 2ywi_A 89 DAEQYPEDSPENMKKVAEELGYPFPYLYDET--QEVAKAYDAACTPDFYIFDR---DLKCVYRGQ 148 (196)
T ss_dssp CTTTCGGGSHHHHHHHHHHHTCCSCEEECSS--CHHHHHHTCCEESEEEEEET---TCBEEEEEC
T ss_pred ccccccccCHHHHHHHHHHcCCCceEEECCc--hHHHHHhCCCCCCeEEEEcC---CCeEEEccc
Confidence 577888999887654322222332 67889999999999999999 999987743
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.2e-18 Score=141.30 Aligned_cols=113 Identities=18% Similarity=0.312 Sum_probs=98.4
Q ss_pred hccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHH
Q 013684 40 MSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN 119 (438)
Q Consensus 40 g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~ 119 (438)
|.++|+|+ +.+.+|+.+++++++||+++|+||++||++|+.+.|.|.+++++++ ++.++.|+.|.+.+
T Consensus 2 ~~~~p~~~--------~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~~ 69 (136)
T 1zzo_A 2 VPAQLQFS--------AKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP----EVTFVGVAGLDQVP 69 (136)
T ss_dssp CCGGGCCE--------EEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHH
T ss_pred CCCCCCcc--------cccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC----CeEEEEEeCCCCHH
Confidence 45678888 8999999999999999999999999999999999999999999985 39999999999999
Q ss_pred HHHHhHhcCCccccc-CCChHHHHHHhhhcCcCccceEEEecCCCCCCCcc
Q 013684 120 AFNNYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 120 ~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
.++++.+++++..++ +.+.. ..+.+.|++.++|+++++|+ +|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~i~~~P~~~~id~---~g~i~ 115 (136)
T 1zzo_A 70 AMQEFVNKYPVKTFTQLADTD--GSVWANFGVTQQPAYAFVDP---HGNVD 115 (136)
T ss_dssp HHHHHHHHTTCTTSEEEECTT--CHHHHHTTCCSSSEEEEECT---TCCEE
T ss_pred HHHHHHHHcCCCceEEEEcCC--cHHHHHcCCCCCceEEEECC---CCCEE
Confidence 999999987652222 21322 67889999999999999999 99987
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.4e-18 Score=150.31 Aligned_cols=124 Identities=11% Similarity=0.020 Sum_probs=96.3
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
..+|..+|+|+ +.+.+|+.+++++++||+++|+||++|||+|+.++|.|+++++++++++ ++|++|++|.
T Consensus 23 ~~~g~~~p~f~--------l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~is~d~ 92 (185)
T 2gs3_A 23 MRCARSMHEFS--------AKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECG--LRILAFPCNQ 92 (185)
T ss_dssp GGGCCCGGGCE--------EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCT
T ss_pred ccCCCCcCCce--------eEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCC--eEEEEEECcc
Confidence 45799999999 9999999999999999999999999999999999999999999999876 9999999873
Q ss_pred -------CHHHHHHhHhcCCcccccCC--ChH--HHHHHh----hhc---C-----cCccceEEEecCCCCCCCcccccc
Q 013684 117 -------DLNAFNNYRACMPWLAVPYS--DLE--TKKALN----RKF---D-----IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 -------~~~~~~~~~~~~~~~~~~~~--d~~--~~~~l~----~~~---~-----v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+.++++.++++.....+. |.. ....+. ..+ + +..+|+++|||+ +|+++.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~---~G~i~~~~~ 169 (185)
T 2gs3_A 93 FGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK---NGCVVKRYG 169 (185)
T ss_dssp TTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECT---TSCEEEEEC
T ss_pred cCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECC---CCCEEEeeC
Confidence 56778888887653321111 111 001111 111 3 445799999999 999987753
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.5e-18 Score=141.81 Aligned_cols=111 Identities=17% Similarity=0.279 Sum_probs=96.7
Q ss_pred cchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHH
Q 013684 42 LSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 121 (438)
Q Consensus 42 ~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~ 121 (438)
.+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.+.|.|.+++++++ ++.++.|+.|.+.+.+
T Consensus 3 ~~p~~~--------l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~~~~ 70 (136)
T 1lu4_A 3 ERLQFT--------ATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP----AVTFVGIATRADVGAM 70 (136)
T ss_dssp GGGCCE--------EEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHHHH
T ss_pred CCCCeE--------eecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC----CcEEEEEEcCCCHHHH
Confidence 467777 8999999999999999999999999999999999999999999986 3999999999999999
Q ss_pred HHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcc
Q 013684 122 NNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 122 ~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
+++.+++++....+.+.. ..+.+.|++.++|+++++|+ +|+++
T Consensus 71 ~~~~~~~~~~~~~~~d~~--~~~~~~~~i~~~P~~~lid~---~G~i~ 113 (136)
T 1lu4_A 71 QSFVSKYNLNFTNLNDAD--GVIWARYNVPWQPAFVFYRA---DGTST 113 (136)
T ss_dssp HHHHHHHTCCSEEEECTT--SHHHHHTTCCSSSEEEEECT---TSCEE
T ss_pred HHHHHHcCCCceEEECCc--hhHHHhcCCCCCCEEEEECC---CCcEE
Confidence 999987664322222333 68899999999999999999 99987
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=144.09 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=103.7
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec--
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS-- 114 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~-- 114 (438)
+.+|..+|+|+ +.+.+|+.+++++++ |+++|+||++||++|+.++|.|.++++++ + +.+++|++
T Consensus 5 l~~g~~~p~f~--------l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~--v~~v~v~~d~ 70 (154)
T 3ia1_A 5 VKPGEPLPDFL--------LLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---G--VPFYVISREP 70 (154)
T ss_dssp CCSBEECCCCC--------EECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---C--CCEEEEECCT
T ss_pred CCCCCcCCceE--------EECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---C--CeEEEEeCCC
Confidence 45799999999 999999999999999 99999999999999999999999999999 3 88999999
Q ss_pred CCCHHHHHHhHhcCCcccccCCC-hHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 115 DEDLNAFNNYRACMPWLAVPYSD-LETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 115 D~~~~~~~~~~~~~~~~~~~~~d-~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+++.+.++++.+++++....+.+ .+....+.+.|++.++|+++|||+ +|+++.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 127 (154)
T 3ia1_A 71 RDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDR---EGKVVALFA 127 (154)
T ss_dssp TCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCSSCEEEEECT---TSEEEEEEE
T ss_pred cccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCcccEEEEECC---CCCEEEEEc
Confidence 67899999999988754333333 123379999999999999999999 999887643
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-17 Score=143.63 Aligned_cols=114 Identities=19% Similarity=0.263 Sum_probs=96.2
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCcc-chhhHHHHHHHHHHHhcC--CCCEEEEEEecCC---CHHHHHHhHhcCC
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNN--GSDFEVVFVSSDE---DLNAFNNYRACMP 129 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~--~~~~~iv~vs~D~---~~~~~~~~~~~~~ 129 (438)
+.+.+|+.+++++++||+++|+||++||++ |+.++|.|+++++++++. +.++++++|++|. +.+.+++|.++++
T Consensus 11 l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~ 90 (171)
T 2rli_A 11 LLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFH 90 (171)
T ss_dssp EEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTC
T ss_pred EEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcC
Confidence 899999999999999999999999999998 999999999999999762 1359999999983 6788999998765
Q ss_pred --cccccCCChHHHHHHhhhcCcCccc---------------eEEEecCCCCCCCcccccc
Q 013684 130 --WLAVPYSDLETKKALNRKFDIEGIP---------------CLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 130 --~~~~~~~d~~~~~~l~~~~~v~~~P---------------~~~lvd~~~~~G~v~~~~~ 173 (438)
|..+.. +.+....+.+.|++..+| +++|||+ +|+++.+..
T Consensus 91 ~~~~~l~~-~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~---~G~i~~~~~ 147 (171)
T 2rli_A 91 PRLLGLTG-STKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNP---DGLFTDYYG 147 (171)
T ss_dssp TTCCEEEC-CHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECT---TSCEEEEEE
T ss_pred CCeEEEeC-CHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECC---CCeEEEEEC
Confidence 444332 334446899999999888 9999999 999987643
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.6e-18 Score=149.05 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=100.7
Q ss_pred HhhccchhHHHHHhhccccc-CCCCCEEecccc-CCCEEEEEEe-ccCCccchh-hHHHHHHHHHHHhcCCCCE-EEEEE
Q 013684 38 LIMSLSQWYVQQLRRRMTST-KEIGEEVKVSDL-EGKVTALYFS-ANWYPPCGN-FTGVLVDVYEELRNNGSDF-EVVFV 112 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~-~~~g~~v~l~~~-~gk~vll~F~-a~wC~~C~~-~~p~l~~l~~~~~~~~~~~-~iv~v 112 (438)
.+|+.+|+|+ +. +.+|+.++|+++ +||+++|+|| ++|||+|+. ++|.|+++++++++.| + +|++|
T Consensus 4 ~~G~~aP~f~--------l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~I 73 (167)
T 2wfc_A 4 KEGDKLPAVT--------VFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKG--VDIIACM 73 (167)
T ss_dssp CTTCBCCCCE--------EESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTT--CCEEEEE
T ss_pred CCCCcCCCcE--------eecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEE
Confidence 4799999999 88 999999999998 9999988886 999999999 9999999999999876 9 99999
Q ss_pred ecCCCHHHHHHhHhcCCcc--cccCCChHHHHHHhhhcCcCcc-----------ceEEEecCCCCCCCcccccc
Q 013684 113 SSDEDLNAFNNYRACMPWL--AVPYSDLETKKALNRKFDIEGI-----------PCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 113 s~D~~~~~~~~~~~~~~~~--~~~~~d~~~~~~l~~~~~v~~~-----------P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.| +.+..++|.++.+.. .....|.+ .++.+.|++... |+++|| + +|+|++...
T Consensus 74 s~d-~~~~~~~~~~~~~~~~~fp~l~D~~--~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~---~G~I~~~~~ 140 (167)
T 2wfc_A 74 AVN-DSFVMDAWGKAHGADDKVQMLADPG--GAFTKAVDMELDLSAVLGNVRSKRYSLVI-E---DGVVTKVNV 140 (167)
T ss_dssp ESS-CHHHHHHHHHHTTCTTTSEEEECTT--SHHHHHTTCEECCHHHHSSCEECCEEEEE-E---TTEEEEEEE
T ss_pred eCC-CHHHHHHHHHhcCCCcceEEEECCC--CcHHHHcCCccccccccCcccceEEEEEE-e---CCEEEEEEe
Confidence 998 567788888877643 22223443 788999998754 999999 9 999998754
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-18 Score=145.25 Aligned_cols=120 Identities=15% Similarity=0.115 Sum_probs=101.4
Q ss_pred HhhccchhHHHHHhhcccc--cCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 38 LIMSLSQWYVQQLRRRMTS--TKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~--~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
.+|.++|+|+ + .+.+|+.+++++++||+++|+||++||++|+.+.|.|.++++++++. +.++.|++|
T Consensus 2 ~~g~~~P~f~--------~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~~~ 70 (148)
T 2b5x_A 2 KLRQPMPELT--------GEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMP 70 (148)
T ss_dssp CTTCBCCCCC--------CCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECC
T ss_pred CCCCCCCCCc--------cccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEEcC
Confidence 3689999999 7 68899999999999999999999999999999999999999999653 899999987
Q ss_pred C-----CHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 116 E-----DLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ~-----~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
. +.+.+.++.+++++....+.+.. ..+++.|++.++|+++++|+ +|+++.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 128 (148)
T 2b5x_A 71 RSEDDLDPGKIKETAAEHDITQPIFVDSD--HALTDAFENEYVPAYYVFDK---TGQLRHFQA 128 (148)
T ss_dssp CSTTTSSHHHHHHHHHHTTCCSCEEECSS--CHHHHHTCCCCSSEEEEECT---TCBEEEEEE
T ss_pred CCccccCHHHHHHHHHHcCCCcceEECCc--hhHHHHhCCCCCCEEEEECC---CCcEEEEec
Confidence 5 78889999987764322222332 67899999999999999999 999887643
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-18 Score=148.84 Aligned_cols=111 Identities=15% Similarity=0.210 Sum_probs=94.3
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-----CCHHHHHHhHhcCCc
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----EDLNAFNNYRACMPW 130 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-----~~~~~~~~~~~~~~~ 130 (438)
+.+.+|+.+++++++||+++|+||++||++|+.++|.|.+++++++..+ +.+++|++| .+.+.+.+++..+++
T Consensus 23 l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~ 100 (164)
T 2h30_A 23 MKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLHEKKDGEFQKWYAGLNY 100 (164)
T ss_dssp CEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTT--SEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred cCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--cEEEEEEcCCCccccCHHHHHHHHHhCCC
Confidence 6699999999999999999999999999999999999999999998865 999999985 456778888887776
Q ss_pred ccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 131 LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 131 ~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..++. +.+....+++.|++.++|+++|||+ +|+++.+.
T Consensus 101 ~~~~~-~~d~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~ 138 (164)
T 2h30_A 101 PKLPV-VTDNGGTIAQNLNISVYPSWALIGK---DGDVQRIV 138 (164)
T ss_dssp TTSCE-EECTTCHHHHHTTCCSSSEEEEECT---TSCEEEEE
T ss_pred CcceE-EEcCchHHHHHcCCCccceEEEECC---CCcEEEEE
Confidence 53332 1222268999999999999999999 99988664
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-18 Score=151.96 Aligned_cols=126 Identities=9% Similarity=0.057 Sum_probs=97.8
Q ss_pred HHHHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 35 LRFLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 35 ~~~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
..+..|..+|+|+ +.+.+|+.+++++++||++||+||++||++|+.++|.|+++++++++++ ++|++|++
T Consensus 20 s~~~~~~~~p~f~--------l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~ 89 (190)
T 2vup_A 20 SHMSAASSIFDFE--------VLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPC 89 (190)
T ss_dssp ----CCCSGGGSC--------CBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--CEEEEEEC
T ss_pred ccCCCCCcccCeE--------EEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCC--eEEEEEEc
Confidence 3455688999999 9999999999999999999999999999999999999999999999875 99999999
Q ss_pred CC-------CHHHHHHhH-hcCC--cccccCCChH--HHHHH-----hhhcCcCccc------eEEEecCCCCCCCcccc
Q 013684 115 DE-------DLNAFNNYR-ACMP--WLAVPYSDLE--TKKAL-----NRKFDIEGIP------CLVVLQPYDDKDDATLH 171 (438)
Q Consensus 115 D~-------~~~~~~~~~-~~~~--~~~~~~~d~~--~~~~l-----~~~~~v~~~P------~~~lvd~~~~~G~v~~~ 171 (438)
|. +.+.++++. ++++ |..+...|.. ....+ .+.|++.++| +++|||+ +|+++.+
T Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~---~G~i~~~ 166 (190)
T 2vup_A 90 NQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDR---DGVPVER 166 (190)
T ss_dssp CCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECT---TSCEEEE
T ss_pred CccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECC---CCcEEEE
Confidence 83 678888888 5543 3322211211 00011 2347899999 9999999 9999876
Q ss_pred cc
Q 013684 172 DG 173 (438)
Q Consensus 172 ~~ 173 (438)
..
T Consensus 167 ~~ 168 (190)
T 2vup_A 167 FS 168 (190)
T ss_dssp EC
T ss_pred EC
Confidence 43
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.3e-18 Score=141.23 Aligned_cols=116 Identities=17% Similarity=0.247 Sum_probs=97.2
Q ss_pred cchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe-----cCC
Q 013684 42 LSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS-----SDE 116 (438)
Q Consensus 42 ~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs-----~D~ 116 (438)
++|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|.++++++. .++.++.|. .+.
T Consensus 1 ~~p~f~--------l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~v~i~~~~~~~~~ 69 (138)
T 4evm_A 1 EVADFE--------LMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAG---DDYVVLTVVSPGHKGEQ 69 (138)
T ss_dssp CCCCCE--------EEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCT---TTEEEEEEECTTSTTCC
T ss_pred CCCcce--------eECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhC---CCcEEEEEEcCCCCchh
Confidence 367777 8999999999999999999999999999999999999999999843 249999994 457
Q ss_pred CHHHHHHhHhcCCcccccC-CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 117 DLNAFNNYRACMPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+.+.++.+.+++..++. .+.. ..+.+.|++.++|+++++|+ +|+++.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 122 (138)
T 4evm_A 70 SEADFKNWYKGLDYKNLPVLVDPS--GKLLETYGVRSYPTQAFIDK---EGKLVKTHP 122 (138)
T ss_dssp CHHHHHHHHTTCCCTTCCEEECTT--CHHHHHTTCCSSSEEEEECT---TCCEEEEEE
T ss_pred hHHHHHHHHhhcCCCCeeEEECcc--hHHHHHcCcccCCeEEEECC---CCcEEEeec
Confidence 8889999999887633332 1332 68999999999999999999 999986643
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-18 Score=151.32 Aligned_cols=120 Identities=23% Similarity=0.243 Sum_probs=99.9
Q ss_pred HhhccchhHHHHHhhcccccCC-CC--CEEeccccCCCEEEEEEec-cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKE-IG--EEVKVSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~-~g--~~v~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
.+|..+|+|+ +.+. +| +.+++++++||+++|+||+ +|||+|+.++|.|+++++++++.+ ++|++|+
T Consensus 2 ~~G~~aP~f~--------l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~--v~vv~Is 71 (186)
T 1n8j_A 2 LINTKIKPFK--------NQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVS 71 (186)
T ss_dssp CTTCBCCCCE--------EEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEE
T ss_pred CCCCcCCCcE--------eecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCC--CEEEEEE
Confidence 3789999999 8888 59 8999999999999999995 999999999999999999999866 9999999
Q ss_pred cCCCHHHHHHhHhcC----CcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 114 SDEDLNAFNNYRACM----PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~~~~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.| +.+..++|.+++ ++....+.|.. ..+.+.|++. .+|+++|||+ +|+++....
T Consensus 72 ~d-~~~~~~~~~~~~~~~~~~~fp~l~D~~--~~~~~~ygv~~~~~g~~~p~~~lID~---~G~i~~~~~ 135 (186)
T 1n8j_A 72 TD-THFTHKAWHSSSETIAKIKYAMIGDPT--GALTRNFDNMREDEGLADRATFVVDP---QGIIQAIEV 135 (186)
T ss_dssp SS-CHHHHHHHHHHCTTGGGCCSEEEECTT--SHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEEE
T ss_pred CC-CHHHHHHHHHHcCcccCCceeEEECCc--hHHHHHhCCccCCCCceeeEEEEECC---CCeEEEEEe
Confidence 98 456677888766 33221222433 6788999997 4799999999 999997754
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-17 Score=146.95 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=99.5
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|..+|+|+ +.+.+|+.+++++++||+++|+|| ++||++|+.++|.|+++++++ . +++|++|+.|
T Consensus 18 ~~G~~~P~f~--------l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~--~v~vv~Is~d- 84 (165)
T 1q98_A 18 QVGEIVENFI--------LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--S--NTIVLCISAD- 84 (165)
T ss_dssp CTTCBCCCCE--------EECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--T--TEEEEEEESS-
T ss_pred CCCCCCCCeE--------EECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--C--CCEEEEEeCC-
Confidence 4789999999 899999999999999999999999 899999999999999999998 4 3999999997
Q ss_pred CHHHHHHhHhcCCc-ccccCCChHHHHHHhhhcCcCc---------cceEEEecCCCCCCCcccccc
Q 013684 117 DLNAFNNYRACMPW-LAVPYSDLETKKALNRKFDIEG---------IPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~~~~~~~~~~~~-~~~~~~d~~~~~~l~~~~~v~~---------~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+.+++|.+++++ ....+.|.. ...+.+.|++.. .|+++|||+ +|+++....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~D~~-~~~~~~~~gv~~~~~~~~g~~~p~~~liD~---~G~i~~~~~ 147 (165)
T 1q98_A 85 LPFAQARFCGAEGIENAKTVSTFR-NHALHSQLGVDIQTGPLAGLTSRAVIVLDE---QNNVLHSQL 147 (165)
T ss_dssp CHHHHTTCTTTTTCTTEEEEECTT-CTHHHHHTTCEECSSTTTTSBCCEEEEECT---TSBEEEEEE
T ss_pred CHHHHHHHHHHcCCCceEEeeccc-cchHHHHhCceecccccCCccceeEEEEcC---CCEEEEEEe
Confidence 56678888887665 222223431 267889999863 599999999 999987764
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.71 E-value=9.5e-18 Score=150.83 Aligned_cols=119 Identities=16% Similarity=0.186 Sum_probs=100.6
Q ss_pred hhccchhHHHHHhhcccccCC--CC--CEEecccc-CCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEE
Q 013684 39 IMSLSQWYVQQLRRRMTSTKE--IG--EEVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 112 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~--~g--~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~v 112 (438)
+|.++|+|+ +.+. +| +.++++++ +||+++|+|| ++||++|+.++|.|.++++++++.+ ++|++|
T Consensus 2 ~G~~aP~f~--------l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~I 71 (192)
T 2h01_A 2 FQGQAPSFK--------AEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGC 71 (192)
T ss_dssp CSSBCCCCE--------EEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEE
T ss_pred CCCcCCCcE--------eEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEE
Confidence 688999999 8888 89 89999999 9999999999 9999999999999999999998865 999999
Q ss_pred ecCCCHHHHHHhHhcC-------CcccccCCChHHHHHHhhhcCcC-----ccceEEEecCCCCCCCcccccc
Q 013684 113 SSDEDLNAFNNYRACM-------PWLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 113 s~D~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++| +.+...+|.+.+ ++....+.|.. ..+.+.|++. .+|+++|||+ +|+++....
T Consensus 72 s~d-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~g~~~P~~~liD~---~G~i~~~~~ 138 (192)
T 2h01_A 72 SVD-SKFTHLAWKKTPLSQGGIGNIKHTLISDIS--KSIARSYDVLFNESVALRAFVLIDK---QGVVQHLLV 138 (192)
T ss_dssp ESS-CHHHHHHHHTSCGGGTCCCSCSSEEEECTT--SHHHHHTTCEETTTEECCEEEEECT---TSBEEEEEE
T ss_pred EeC-CHHHHHHHHHhHHhhCCccCCCcCeEECCc--HHHHHHhCCcCcCCceeeEEEEEcC---CCEEEEEEe
Confidence 998 466777777765 22211122333 6889999999 8999999999 999987754
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.71 E-value=9.7e-18 Score=151.54 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=101.5
Q ss_pred HhhccchhHHHHHhhcccccCC--CCC---EEecccc-CCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEE
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKE--IGE---EVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVV 110 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~--~g~---~v~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv 110 (438)
.+|..+|+|+ +.+. +|+ .++++++ +||+++|+|| ++||++|+.++|.|.++++++++.+ ++++
T Consensus 2 ~~G~~~P~f~--------l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv 71 (198)
T 1zof_A 2 VVTKLAPDFK--------APAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVI 71 (198)
T ss_dssp CTTSBCCCCE--------EEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEE
T ss_pred CCCCcCCceE--------eecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEE
Confidence 4789999999 8898 898 9999999 9999999999 9999999999999999999998875 9999
Q ss_pred EEecCCCHHHHHHhHhc-------CCcccccCCChHHHHHHhhhcCcC-----ccceEEEecCCCCCCCcccccc
Q 013684 111 FVSSDEDLNAFNNYRAC-------MPWLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 111 ~vs~D~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+|++|. .+..++|.+. .++....+.|.. ..+.+.|++. .+|+++|||+ +|+++.+..
T Consensus 72 ~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~~g~~~P~~~lid~---~G~i~~~~~ 140 (198)
T 1zof_A 72 GVSIDS-EQVHFAWKNTPVEKGGIGQVSFPMVADIT--KSISRDYDVLFEEAIALRGAFLIDK---NMKVRHAVI 140 (198)
T ss_dssp EEESSC-HHHHHHHHTSCGGGTCCCCCSSCEEECTT--SHHHHHTTCEETTTEECEEEEEEET---TTEEEEEEE
T ss_pred EEECCC-HHHHHHHHHhhhhcccccCceeEEEECCc--hHHHHHhCCcccCCcccceEEEECC---CCEEEEEEe
Confidence 999985 6677777776 333221122333 6888999999 9999999999 999987754
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-17 Score=149.03 Aligned_cols=127 Identities=17% Similarity=0.242 Sum_probs=100.3
Q ss_pred HHHHhhccc--hhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCcc-chhhHHHHHHHHHHHhcC-CCCEEEE
Q 013684 35 LRFLIMSLS--QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNN-GSDFEVV 110 (438)
Q Consensus 35 ~~~~~g~~~--p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~-~~~~~iv 110 (438)
....+|.++ |+|+ +.+.+|+.+++++++||++||+||++||++ |+.++|.|+++++++++. +.+++|+
T Consensus 11 ~~~~~g~~~~~p~f~--------l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv 82 (200)
T 2b7k_A 11 ANRGYGKPSLGGPFH--------LEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPL 82 (200)
T ss_dssp -----CCCCCCCCCE--------EEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_pred hHhccCCCCcCCCEE--------EEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEE
Confidence 345678886 9999 899999999999999999999999999997 999999999999999864 3359999
Q ss_pred EEecCC---CHHHHHHhHhcCC--cccccCCChHHHHHHhhhcCcC-ccc---------------eEEEecCCCCCCCcc
Q 013684 111 FVSSDE---DLNAFNNYRACMP--WLAVPYSDLETKKALNRKFDIE-GIP---------------CLVVLQPYDDKDDAT 169 (438)
Q Consensus 111 ~vs~D~---~~~~~~~~~~~~~--~~~~~~~d~~~~~~l~~~~~v~-~~P---------------~~~lvd~~~~~G~v~ 169 (438)
+|++|. +.+.+++|.++++ |..++. +.+....+++.|++. ..| +++|||+ +|+++
T Consensus 83 ~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~-~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~---~G~i~ 158 (200)
T 2b7k_A 83 FITCDPARDSPAVLKEYLSDFHPSILGLTG-TFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDP---EGQFV 158 (200)
T ss_dssp EEESCTTTCCHHHHHHHHTTSCTTCEEEEC-CHHHHHHHHHHTTC--------------CTTTCCCEEEECT---TSCEE
T ss_pred EEECCCCCCCHHHHHHHHHHcCCCceEEeC-CHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECC---CCcEE
Confidence 999984 7888999998764 554543 344447888999987 344 8899999 99998
Q ss_pred cccc
Q 013684 170 LHDG 173 (438)
Q Consensus 170 ~~~~ 173 (438)
....
T Consensus 159 ~~~~ 162 (200)
T 2b7k_A 159 DALG 162 (200)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7643
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-18 Score=151.14 Aligned_cols=120 Identities=16% Similarity=0.193 Sum_probs=101.1
Q ss_pred HhhccchhHHHHHhhcccccCCC-------------C--CEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHh
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEI-------------G--EEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELR 101 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~-------------g--~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~ 101 (438)
.+|..+|+|+ +.+.+ | +.+++++++||+++|+|| ++||++|+.++|.|.+++++++
T Consensus 5 ~~G~~~P~f~--------l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~ 76 (195)
T 2bmx_A 5 TIGDQFPAYQ--------LTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFE 76 (195)
T ss_dssp CTTCBCCCCE--------EEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHH
T ss_pred CCCCcCCCcC--------cccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHH
Confidence 4799999999 88887 7 899999999999999999 9999999999999999999998
Q ss_pred cCCCCEEEEEEecCCCHHHHHHhHhcC----CcccccCCChHHHHHHhhhcCcC-----ccceEEEecCCCCCCCccccc
Q 013684 102 NNGSDFEVVFVSSDEDLNAFNNYRACM----PWLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 102 ~~~~~~~iv~vs~D~~~~~~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.+ +++++|++|. .+..++|.+.+ ++....+.|.. ..+.+.|++. .+|+++|||+ +|+++.+.
T Consensus 77 ~~~--v~vv~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~~g~~~P~~~lid~---~G~i~~~~ 148 (195)
T 2bmx_A 77 DRD--AQILGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIK--RELSQAAGVLNADGVADRVTFIVDP---NNEIQFVS 148 (195)
T ss_dssp TTT--EEEEEEESSC-HHHHHHHHHHCTTGGGCCSCEEECTT--SHHHHHHTCBCTTSSBCEEEEEECT---TSBEEEEE
T ss_pred HCC--CEEEEEECCC-HHHHHHHHHHhccccCCceeEEeCCc--hHHHHHhCCcccCCCccceEEEEcC---CCeEEEEE
Confidence 765 9999999985 66777887765 32211122333 6889999999 9999999999 99998875
Q ss_pred c
Q 013684 173 G 173 (438)
Q Consensus 173 ~ 173 (438)
.
T Consensus 149 ~ 149 (195)
T 2bmx_A 149 A 149 (195)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-17 Score=148.17 Aligned_cols=119 Identities=19% Similarity=0.259 Sum_probs=103.6
Q ss_pred hhhcCCCCCc----c-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 013684 211 LLTNHDRGYL----L-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284 (438)
Q Consensus 211 ~~g~~~~~f~----l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~i 284 (438)
.+|..+|||+ + +.+|+ +++|++++||+++|+|| +.|||.|..++..+++++++|++. +++|++|
T Consensus 27 ~vG~~APdF~~~a~l~d~~g~-~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~---------g~~vigi 96 (219)
T 3tue_A 27 KINSPAPSFEEVALMPNGSFK-KISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNEL---------NCEVLAC 96 (219)
T ss_dssp CTTSBCCCCEEEEECTTSCEE-EEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTT---------TEEEEEE
T ss_pred ccCCcCCCCcccccccCCCCc-EEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccC---------CcEEEEe
Confidence 5899999998 6 88888 99999999999999999 789999999999999999999976 8999999
Q ss_pred ecCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhcCcC----c--eeeEEEECCCCcEEEcc
Q 013684 285 STDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ----G--IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 285 s~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~l~~~~~v~----~--~P~~~lid~~G~i~~~~ 340 (438)
|+| +....++|..+. ..+.||++.|.+.+++++|||- + ...+||||++|+|+...
T Consensus 97 S~D-s~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~ 163 (219)
T 3tue_A 97 SID-SEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQIT 163 (219)
T ss_dssp ESS-CHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred eCC-chhhHHHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEE
Confidence 999 555666666542 2478999999999999999982 3 35899999999998764
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-17 Score=152.92 Aligned_cols=122 Identities=12% Similarity=0.159 Sum_probs=102.5
Q ss_pred HHHhhccchhHHHHHhhcccccCC--CC--CEEecccc-CCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEE
Q 013684 36 RFLIMSLSQWYVQQLRRRMTSTKE--IG--EEVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEV 109 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~~~--~g--~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~i 109 (438)
.+.+|..+|+|+ +.+. +| +.++++++ +||+++|+|| ++||++|+.++|.|++++++|++.+ ++|
T Consensus 20 ~l~~G~~aP~f~--------l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~--v~v 89 (213)
T 2i81_A 20 PTYVGKEAPFFK--------AEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERN--VEL 89 (213)
T ss_dssp CCCBTSBCCCCE--------EEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTT--EEE
T ss_pred cccCCCcCCCeE--------eeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEE
Confidence 345899999999 8888 89 89999999 9999999999 9999999999999999999998865 999
Q ss_pred EEEecCCCHHHHHHhHhcC-------CcccccCCChHHHHHHhhhcCcC-----ccceEEEecCCCCCCCcccccc
Q 013684 110 VFVSSDEDLNAFNNYRACM-------PWLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 110 v~vs~D~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|+|++| +.+..++|.+.. ++....+.|.. ..+.+.|++. .+|+++|||+ +|+++....
T Consensus 90 v~Is~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~--~~~~~~ygv~~~~g~~~p~~~lID~---~G~i~~~~~ 159 (213)
T 2i81_A 90 LGCSVD-SKYTHLAWKKTPLAKGGIGNIKHTLLSDIT--KSISKDYNVLFDDSVSLRAFVLIDM---NGIVQHLLV 159 (213)
T ss_dssp EEEESS-CHHHHHHHHSSCGGGTCCCSCSSEEEECTT--SHHHHHTTCEETTTEECEEEEEECT---TSBEEEEEE
T ss_pred EEEeCC-CHHHHHHHHHHHHhhCCccCCCceEEECCc--hHHHHHhCCccccCCcccEEEEECC---CCEEEEEEe
Confidence 999998 566777787755 22211122433 6899999999 8999999999 999988753
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-17 Score=145.76 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=100.0
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccC-CccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|..+|+|+ +.+.+|+.+++++++||+++|+||++| |++|+.++|.|+++++++ . ++++++|+.|
T Consensus 19 ~~G~~~p~f~--------l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~--~~~vv~is~d- 85 (167)
T 2jsy_A 19 KVGDQAPDFT--------VLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--G--DVNVYTISAD- 85 (167)
T ss_dssp CTTSCCCCCE--------EEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--S--SCEEEEEECS-
T ss_pred CCCCcCCceE--------EECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--C--CCEEEEEECC-
Confidence 4789999999 899999999999999999999999999 999999999999999999 3 4999999998
Q ss_pred CHHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcCc------cceEEEecCCCCCCCcccccc
Q 013684 117 DLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~------~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+.++++.+++++..++ +.|. ....+.+.|++.. +|+++|||+ +|+++.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~v~~~~~g~~~p~~~lid~---~G~i~~~~~ 145 (167)
T 2jsy_A 86 LPFAQARWCGANGIDKVETLSDH-RDMSFGEAFGVYIKELRLLARSVFVLDE---NGKVVYAEY 145 (167)
T ss_dssp SGGGTSCCGGGSSCTTEEEEEGG-GTCHHHHHTTCBBTTTCSBCCEEEEECT---TSCEEEEEE
T ss_pred CHHHHHHHHHhcCCCCceEeeCC-chhHHHHHhCCccccCCceeeEEEEEcC---CCcEEEEEe
Confidence 456677888877652233 2231 2267889999987 499999999 999998764
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=151.12 Aligned_cols=119 Identities=17% Similarity=0.144 Sum_probs=100.8
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|..+|+|+ +.+.+|+.++|++++||+++|+|| ++||++|+.++|.|+++++++ .+ ++|++||.|
T Consensus 53 ~~G~~aPdf~--------l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~--v~vv~Is~D- 119 (200)
T 3zrd_A 53 QIGDKAKDFT--------LVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--EN--TVVLCISSD- 119 (200)
T ss_dssp CTTCBCCCCE--------EECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TT--EEEEEEESS-
T ss_pred CCCCCCCCeE--------EECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CC--CEEEEEECC-
Confidence 4799999999 999999999999999999999999 789999999999999999998 43 999999998
Q ss_pred CHHHHHHhHhcCCc-ccccCCChHHHHHHhhhcCcC---------ccceEEEecCCCCCCCcccccc
Q 013684 117 DLNAFNNYRACMPW-LAVPYSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~~~~~~~~~~~~-~~~~~~d~~~~~~l~~~~~v~---------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+.+++|.+++++ ....+.|.. ...+.+.|++. ..|+++|||+ +|+++....
T Consensus 120 ~~~~~~~~~~~~~~~~f~~l~D~~-~~~~~~~ygv~~~~~~~~g~~~p~~~lID~---~G~I~~~~~ 182 (200)
T 3zrd_A 120 LPFAQSRFCGAEGLSNVITLSTLR-GADFKQAYGVAITEGPLAGLTARAVVVLDG---QDNVIYSEL 182 (200)
T ss_dssp CHHHHTTCTTTTTCTTEEEEETTS-CTHHHHHTTCEECSSTTTTSBCCEEEEECT---TSBEEEEEE
T ss_pred CHHHHHHHHHHcCCCCceEEecCc-hHHHHHHhCceeecccCCCccccEEEEECC---CCeEEEEEe
Confidence 56778888887765 332333441 26889999986 3699999999 999997754
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-17 Score=153.83 Aligned_cols=121 Identities=14% Similarity=0.178 Sum_probs=98.4
Q ss_pred HHHHhhccchhHHHHHhhcccccC---CCCCEEeccccCCCEEEEEEec-cCCccchhhHHHHHHHHHHHhcCCCCEEEE
Q 013684 35 LRFLIMSLSQWYVQQLRRRMTSTK---EIGEEVKVSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVV 110 (438)
Q Consensus 35 ~~~~~g~~~p~f~~~~~~~~~~~~---~~g~~v~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv 110 (438)
..+.+|..+|+|+ +.+ .+|+.+++++++||++||+||+ +||++|+.++|.|++++++|++++ ++||
T Consensus 38 ~~l~~G~~aP~f~--------l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~--v~vv 107 (222)
T 3ztl_A 38 MVLLPNRPAPEFK--------GQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRN--CQVI 107 (222)
T ss_dssp --CCSSEECCCCE--------EEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTT--EEEE
T ss_pred ccccCCCCCCCeE--------EecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEE
Confidence 3456899999999 874 4569999999999999999996 999999999999999999999876 9999
Q ss_pred EEecCCCHHHHHHhHhcC---------CcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 111 FVSSDEDLNAFNNYRACM---------PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 111 ~vs~D~~~~~~~~~~~~~---------~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+|++|. .++..++.+.+ +|..+. |.+ ..+.+.|++. .+|+++|||+ +|+++....
T Consensus 108 ~Is~D~-~~~~~~~~~~~~~~~~~~~~~~~~l~--D~~--~~~~~~ygv~~~~~g~~~P~~~lID~---~G~I~~~~~ 177 (222)
T 3ztl_A 108 ACSTDS-QYSHLAWDNLDRKSGGLGHMKIPLLA--DRK--QEISKAYGVFDEEDGNAFRGLFIIDP---NGILRQITI 177 (222)
T ss_dssp EEESSC-HHHHHHHHHSCGGGTSCCSCSSCEEE--CSS--SHHHHHTTCBCTTTSSBCEEEEEECT---TSEEEEEEE
T ss_pred EEECCC-HHHHHHHHHHhhhhccccccceeEEe--CCc--hHHHHHcCCeecCCCCccceEEEECC---CCeEEEEEe
Confidence 999985 44455555543 333222 333 6889999998 8999999999 999987754
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-17 Score=152.53 Aligned_cols=122 Identities=19% Similarity=0.200 Sum_probs=99.6
Q ss_pred HHHhhccchhHHHHHhhcccccCC---CCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEE
Q 013684 36 RFLIMSLSQWYVQQLRRRMTSTKE---IGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVF 111 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~~~---~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~ 111 (438)
.+.+|..+|+|+ +.+. +|+.+++++++||+++|+|| ++||++|+.++|.|++++++|++.+ ++||+
T Consensus 18 ~~~~G~~aP~f~--------l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~--v~vv~ 87 (211)
T 2pn8_A 18 LYFQSMPAPYWE--------GTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVA 87 (211)
T ss_dssp -CCSSCBCCCCE--------EEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEE
T ss_pred cCCCCCcCCCeE--------eecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEE
Confidence 345799999999 7764 56899999999999999999 9999999999999999999998865 99999
Q ss_pred EecCCCHHHHHHhHhcC-------CcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 112 VSSDEDLNAFNNYRACM-------PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 112 vs~D~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|++| +.+..++|.+.. ++....+.|.. ..+++.|++. .+|+++|||+ +|+++....
T Consensus 88 Is~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~--~~~~~~ygv~~~~~g~~~p~~~lID~---~G~I~~~~~ 156 (211)
T 2pn8_A 88 CSVD-SQFTHLAWINTPRRQGGLGPIRIPLLSDLT--HQISKDYGVYLEDSGHTLRGLFIIDD---KGILRQITL 156 (211)
T ss_dssp EESS-CHHHHHHHHTSCGGGTCCCSCSSCEEECTT--SHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEEE
T ss_pred EECC-CHHHHHHHHHHhhhccCccCCceEEEECCc--hHHHHHcCCcccCCCcccceEEEECC---CCEEEEEEe
Confidence 9997 456677777755 22211122433 6889999995 6999999999 999997753
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-17 Score=146.23 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=98.0
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEec-cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|..+|+|+ +.+.+|+.+++++++||+++|+||+ +||++|+.++|.|+++++++ . ++++++|+.|
T Consensus 17 ~~G~~~P~f~--------l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~--~v~vv~is~d- 83 (163)
T 1psq_A 17 QVGDKALDFS--------LTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--D--NTVVLTVSMD- 83 (163)
T ss_dssp CTTSBCCCCE--------EECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T--TEEEEEEESS-
T ss_pred CCCCCCCCEE--------EEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--C--CcEEEEEECC-
Confidence 4789999999 8999999999999999999999995 99999999999999999998 3 4999999998
Q ss_pred CHHHHHHhHhcCCc-ccccCCC-hHHHHHHhhhcCcC----c--cceEEEecCCCCCCCcccccc
Q 013684 117 DLNAFNNYRACMPW-LAVPYSD-LETKKALNRKFDIE----G--IPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~~~~~~~~~~~~-~~~~~~d-~~~~~~l~~~~~v~----~--~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+..++|.+++++ ....+.| .+ ..+.+.|++. + .|+++|||+ +|+++....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~D~~~--~~~~~~~gv~~~~~g~~~p~~~liD~---~G~i~~~~~ 143 (163)
T 1psq_A 84 LPFAQKRWCGAEGLDNAIMLSDYFD--HSFGRDYALLINEWHLLARAVFVLDT---DNTIRYVEY 143 (163)
T ss_dssp CHHHHHHHHHHHTCTTSEEEECTTT--CHHHHHHTCBCTTTCSBCCEEEEECT---TCBEEEEEE
T ss_pred CHHHHHHHHHhcCCCCcEEecCCch--hHHHHHhCCccccCCceEEEEEEEcC---CCeEEEEEe
Confidence 45667778876554 2222224 32 6788999987 3 499999999 999988764
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-17 Score=150.37 Aligned_cols=120 Identities=17% Similarity=0.192 Sum_probs=100.2
Q ss_pred HhhccchhHHHHHhhcccccCC--CC--CEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEE
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKE--IG--EEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 112 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~--~g--~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~v 112 (438)
.+|..+|+|+ +.+. +| +.+++++++||+++|+|| ++||++|+.++|.|+++++++++.+ +++++|
T Consensus 7 ~~G~~aP~f~--------l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~--v~vi~I 76 (202)
T 1uul_A 7 EDLHPAPDFN--------ETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLAC 76 (202)
T ss_dssp CTTSBCCCCE--------EEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEE
T ss_pred cCCCcCCCcE--------eeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEE
Confidence 4799999999 8877 78 899999999999999999 9999999999999999999998865 999999
Q ss_pred ecCCCHHHHHHhHhcC-------CcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 113 SSDEDLNAFNNYRACM-------PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 113 s~D~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++| +.+...++.+.+ +.....+.|.. ..+.+.|++. .+|+++|||+ +|+++.+..
T Consensus 77 s~D-~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~--~~~~~~ygv~~~~~g~~~P~~~lid~---~G~i~~~~~ 144 (202)
T 1uul_A 77 SMD-SEYSHLAWTSIERKRGGLGQMNIPILADKT--KCIMKSYGVLKEEDGVAYRGLFIIDP---KQNLRQITV 144 (202)
T ss_dssp ESS-CHHHHHHHHHSCGGGTCCCSCSSCEEECTT--CHHHHHHTCEETTTTEECEEEEEECT---TSBEEEEEE
T ss_pred eCC-CHHHHHHHHHHHHhhCCCCCCceeEEECCc--hHHHHHcCCccCCCCceeeEEEEECC---CCEEEEEEe
Confidence 998 456677777755 22111122332 6889999999 9999999999 999987753
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.8e-18 Score=147.04 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=99.4
Q ss_pred HHhhccchhHHHHHhhcccccCC--CCCEEecccc-CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKE--IGEEVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~--~g~~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
+.+|..+|+|+ +.+. +|+.+.++++ +||+++|+||++||++|+.+.|.|.+++++ + +.+++|+
T Consensus 22 ~~~G~~~P~f~--------l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~--v~vv~v~ 87 (168)
T 2b1k_A 22 ALIGKPVPKFR--------LESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----G--IRVVGMN 87 (168)
T ss_dssp TTTTSBCCCCE--------EEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T--CCEEEEE
T ss_pred cccCCcCCCeE--------eecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC----C--CEEEEEE
Confidence 35899999999 8898 9999999985 899999999999999999999999988775 3 8899999
Q ss_pred cCCCHHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 114 SDEDLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+|.+.+.+.++.+++++.... ..+.. ..+++.|++.++|++++||+ +|+++.+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~~~ 143 (168)
T 2b1k_A 88 YKDDRQKAISWLKELGNPYALSLFDGD--GMLGLDLGVYGAPETFLIDG---NGIIRYRHA 143 (168)
T ss_dssp ESCCHHHHHHHHHHHCCCCSEEEEETT--CHHHHHHTCCSSSEEEEECT---TSBEEEEEE
T ss_pred CCCChHHHHHHHHHcCCCCceeeECcc--hHHHHHcCccccCEEEEECC---CCeEEEEEe
Confidence 999999999999876543221 11332 67899999999999999999 999986643
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.68 E-value=4e-17 Score=150.14 Aligned_cols=122 Identities=19% Similarity=0.229 Sum_probs=100.1
Q ss_pred HHHhhccchhHHHHHhhccccc---CCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEE
Q 013684 36 RFLIMSLSQWYVQQLRRRMTST---KEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVF 111 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~---~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~ 111 (438)
.+.+|.++|+|+ +. +.+|+.+++++++||+++|+|| ++||++|+.++|.|+++++++++.+ ++||+
T Consensus 26 ~l~~G~~aP~f~--------l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~--v~vv~ 95 (220)
T 1zye_A 26 APAVTQHAPYFK--------GTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVA 95 (220)
T ss_dssp -CCTTSBCCCCE--------EEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEE
T ss_pred cccCCCCCCCcE--------EEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEE
Confidence 346899999999 65 4678999999999999999999 9999999999999999999998865 99999
Q ss_pred EecCCCHHHHHHhHhcC-------CcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 112 VSSDEDLNAFNNYRACM-------PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 112 vs~D~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|++| +.+...++.+.+ ++....+.|.. ..+.+.|++. .+|+++|||+ +|+++.+..
T Consensus 96 Is~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~--~~i~~~ygv~~~~~g~~~P~~~liD~---~G~I~~~~~ 164 (220)
T 1zye_A 96 VSVD-SHFSHLAWINTPRKNGGLGHMNIALLSDLT--KQISRDYGVLLEGPGLALRGLFIIDP---NGVIKHLSV 164 (220)
T ss_dssp EESS-CHHHHHHHHTSCGGGTCCCSCSSEEEECTT--SHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEEE
T ss_pred EECC-CHHHHHHHHHHHHHhCCCcCCceEEEECCc--HHHHHHhCCeecCCCcccceEEEECC---CCEEEEEEe
Confidence 9998 456667777654 22211122333 6889999999 9999999999 999987754
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-16 Score=142.76 Aligned_cols=122 Identities=12% Similarity=-0.062 Sum_probs=90.6
Q ss_pred HhhccchhHHHHHhhcccccCCC-CCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEI-GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD- 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~-g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D- 115 (438)
.....+|+|+ +.+.+ |+.++|++++||+|||+|||+|||+| .++|.|+++++++++.| ++||+|+.|
T Consensus 12 ~~~~~~pdF~--------l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g--~~vlgvs~d~ 80 (207)
T 2r37_A 12 GISGTIYEYG--------ALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFG--LVILGFPCNQ 80 (207)
T ss_dssp ---CCGGGCE--------EEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGT--EEEEEEECCC
T ss_pred cccCccCCeE--------eeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCC--EEEEEEECcc
Confidence 4556789999 89999 99999999999999999999999999 78999999999999876 999999975
Q ss_pred ------CCHHHHHHhHh------cCCcccccCCChH--------HHHHHhhhc---------------------CcCccc
Q 013684 116 ------EDLNAFNNYRA------CMPWLAVPYSDLE--------TKKALNRKF---------------------DIEGIP 154 (438)
Q Consensus 116 ------~~~~~~~~~~~------~~~~~~~~~~d~~--------~~~~l~~~~---------------------~v~~~P 154 (438)
.+.++.++|++ +++.....+.+.+ .-..+.... .+...|
T Consensus 81 f~~~e~~~~~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ 160 (207)
T 2r37_A 81 FGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNF 160 (207)
T ss_dssp BTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTT
T ss_pred cCcCCCCCHHHHHHHHHhcchhhccCccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccc
Confidence 24577888887 6654322222111 001122211 133448
Q ss_pred eEEEecCCCCCCCcccccc
Q 013684 155 CLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 155 ~~~lvd~~~~~G~v~~~~~ 173 (438)
++||||+ +|+++.+..
T Consensus 161 ttflID~---~G~i~~~~~ 176 (207)
T 2r37_A 161 EKFLVGP---DGIPIMRWH 176 (207)
T ss_dssp CEEEECT---TSCEEEEEC
T ss_pred eEEEECC---CCcEEEEEC
Confidence 9999999 999987753
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-17 Score=146.47 Aligned_cols=117 Identities=13% Similarity=0.080 Sum_probs=98.8
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|.++|+|+ +.+.+|+.+++++++||+++|+|| ++||++|+.++|.|++++++ . +++|++|+.|
T Consensus 21 ~~G~~aP~f~--------l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~--~~~vv~is~d- 86 (166)
T 3p7x_A 21 NEGDFAPDFT--------VLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---E--EGIVLTISAD- 86 (166)
T ss_dssp CTTSBCCCCE--------EECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---T--TSEEEEEESS-
T ss_pred CCCCCCCCeE--------EEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---C--CCEEEEEECC-
Confidence 4799999999 999999999999999999999999 78999999999999999887 3 4999999988
Q ss_pred CHHHHHHhHhcCCc-ccccCCCh-HHHHHHhhhcCcCc------cceEEEecCCCCCCCcccccc
Q 013684 117 DLNAFNNYRACMPW-LAVPYSDL-ETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~~~~~~~~~~~~-~~~~~~d~-~~~~~l~~~~~v~~------~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+.+++|.+++++ ....+.|. + ..+.+.|++.. +|+++|||+ +|++++...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~l~D~~~--~~~~~~~gv~~~~~g~~~p~~~liD~---~G~i~~~~~ 146 (166)
T 3p7x_A 87 LPFAQKRWCASAGLDNVITLSDHRD--LSFGENYGVVMEELRLLARAVFVLDA---DNKVVYKEI 146 (166)
T ss_dssp CHHHHHHHHHHHTCSSCEEEECTTT--CHHHHHHTCEETTTTEECCEEEEECT---TCBEEEEEE
T ss_pred CHHHHHHHHHHcCCCceEEccCCch--hHHHHHhCCccccCCceeeEEEEECC---CCeEEEEEE
Confidence 56778888886654 22222244 3 58899999985 899999999 999998754
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-17 Score=152.35 Aligned_cols=120 Identities=20% Similarity=0.192 Sum_probs=98.3
Q ss_pred HhhccchhHHHHHhhcccccC---CCCCEEeccccCCCEEEEEEec-cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 38 LIMSLSQWYVQQLRRRMTSTK---EIGEEVKVSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~---~~g~~v~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
.+|.++|+|+ +.+ .+|+.++|++++||+++|+||+ +||++|+.++|.|++++++|++.| ++|++||
T Consensus 49 ~vG~~aPdF~--------l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~g--v~vv~Is 118 (240)
T 3qpm_A 49 KISKPAPQWE--------GTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAIN--TEVVACS 118 (240)
T ss_dssp CTTSBCCCCE--------EEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTT--EEEEEEE
T ss_pred CCCCCCCCcE--------eeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEE
Confidence 4899999999 664 4567999999999999999999 999999999999999999999876 9999999
Q ss_pred cCCCHHHHHHhHhcC-------CcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 114 SDEDLNAFNNYRACM-------PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.|. .+...++.+.. ++....+.|.+ ..+.+.|++. .+|++||||+ +|+++....
T Consensus 119 ~D~-~~~~~~~~~~~~~~~~~~~~~fp~l~D~~--~~v~~~ygv~~~~~g~~~p~~flID~---~G~I~~~~~ 185 (240)
T 3qpm_A 119 VDS-QFTHLAWIITPRKQGGLGPMKIPLLSDLT--HQISKDYGVYLEDQGHTLRGLFIIDE---KGVLRQITM 185 (240)
T ss_dssp SSC-HHHHHHHHHSCGGGTCCCSCSSCEEECTT--SHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEEE
T ss_pred CCC-HHHHHHHHHHHHhhcCCCCCceeEEeCch--HHHHHHhCCccccCCCccceEEEEcC---CCeEEEEEe
Confidence 985 45566666653 22221222443 6899999997 7899999999 999987754
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-17 Score=143.32 Aligned_cols=119 Identities=14% Similarity=0.173 Sum_probs=97.8
Q ss_pred HHHhhccchhHHHHHhhcccccCCCC--------CEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCE
Q 013684 36 RFLIMSLSQWYVQQLRRRMTSTKEIG--------EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDF 107 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~~~~g--------~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~ 107 (438)
...+|..+|+|+ +.+.+| +.+++++++||+++|+||++||++|+.+.|.|.+++++ .++
T Consensus 7 ~~~~g~~~p~f~--------l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-----~~v 73 (156)
T 1kng_A 7 SALIGRPAPQTA--------LPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD-----KRF 73 (156)
T ss_dssp -----CBCCCCC--------BCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC-----TTS
T ss_pred hHHhCCCCCCce--------eeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc-----CCe
Confidence 456899999999 899999 89999999999999999999999999999999988775 249
Q ss_pred EEEEEecCCCHHHHHHhHhcCCcccc-cCCChHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 108 EVVFVSSDEDLNAFNNYRACMPWLAV-PYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 108 ~iv~vs~D~~~~~~~~~~~~~~~~~~-~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.++.|++|.+.+.++++.+++++... ...+.. ..+++.|++.++|++++||+ +|+++.+.
T Consensus 74 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~~id~---~G~i~~~~ 134 (156)
T 1kng_A 74 QLVGINYKDAADNARRFLGRYGNPFGRVGVDAN--GRASIEWGVYGVPETFVVGR---EGTIVYKL 134 (156)
T ss_dssp EEEEEEESCCHHHHHHHHHHHCCCCSEEEEETT--SHHHHHTTCCSSCEEEEECT---TSBEEEEE
T ss_pred EEEEEECCCCHHHHHHHHHHcCCCCceeeeCch--hHHHHhcCcCccCeEEEEcC---CCCEEEEE
Confidence 99999999999999999987654322 111322 68899999999999999999 99988654
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-17 Score=143.05 Aligned_cols=119 Identities=14% Similarity=0.193 Sum_probs=100.3
Q ss_pred HhhccchhHHHHHhhccccc--CCCC--CEEeccc-cCCCEEEEEEe-ccCCccch-hhHHHHHHHHHHHhcCCCCEE-E
Q 013684 38 LIMSLSQWYVQQLRRRMTST--KEIG--EEVKVSD-LEGKVTALYFS-ANWYPPCG-NFTGVLVDVYEELRNNGSDFE-V 109 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~--~~~g--~~v~l~~-~~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~-i 109 (438)
.+|+.+|+|+ +. +.+| +.+++++ ++||+++|+|| ++||++|+ .++|.|+++++++++.| ++ |
T Consensus 5 ~~G~~aP~f~--------l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~--v~~v 74 (162)
T 1tp9_A 5 AVGDVLPDGK--------LAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG--VTEI 74 (162)
T ss_dssp CTTCBCCCCE--------EEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCCE
T ss_pred CCCCCCCCeE--------EEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEE
Confidence 4799999999 75 8899 9999999 89999999999 89999999 99999999999999876 99 9
Q ss_pred EEEecCCCHHHHHHhHhcCCc--ccccCCChHHHHHHhhhcCcC-----------ccceEEEecCCCCCCCcccccc
Q 013684 110 VFVSSDEDLNAFNNYRACMPW--LAVPYSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 110 v~vs~D~~~~~~~~~~~~~~~--~~~~~~d~~~~~~l~~~~~v~-----------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++||.| +.+..++|.++++. ......|.+ ..+.+.|++. .+|+++||| +|++++...
T Consensus 75 v~Is~d-~~~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~g~~~~~~p~~~vid----~G~i~~~~~ 144 (162)
T 1tp9_A 75 LCISVN-DPFVMKAWAKSYPENKHVKFLADGS--ATYTHALGLELDLQEKGLGTRSRRFALLVD----DLKVKAANI 144 (162)
T ss_dssp EEEESS-CHHHHHHHHHTCTTCSSEEEEECTT--SHHHHHTTCEEEETTTTSEEEECCEEEEEE----TTEEEEEEE
T ss_pred EEEECC-CHHHHHHHHHhcCCCCCeEEEECCC--chHHHHcCcccccccCCCCccceeEEEEEE----CCEEEEEEe
Confidence 999998 56778888887765 222233544 7889999986 389999997 899987754
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-16 Score=143.79 Aligned_cols=121 Identities=14% Similarity=-0.016 Sum_probs=91.3
Q ss_pred hhccchhHHHHHhhcccccCCC-CCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC--
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEI-GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-- 115 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~-g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-- 115 (438)
.+..+|+|+ +++.+ |+.++|++++||+|||+|||+|||+|+ ++|.|++++++|++.| ++||+|+.|
T Consensus 31 ~~~~~pdF~--------l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g--~~Vlgvs~d~f 99 (215)
T 2i3y_A 31 EKGTIYDYE--------AIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYG--LVVLGFPCNQF 99 (215)
T ss_dssp CCCCGGGCE--------EEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGT--EEEEEEECCCS
T ss_pred ccCCcCCcE--------eeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCC--eEEEEEEcccc
Confidence 355789999 89999 999999999999999999999999999 9999999999999876 999999975
Q ss_pred -----CCHHHHHHhHh------cCCcccccCCChH----H----HHHHhhh-------c--------------CcCccce
Q 013684 116 -----EDLNAFNNYRA------CMPWLAVPYSDLE----T----KKALNRK-------F--------------DIEGIPC 155 (438)
Q Consensus 116 -----~~~~~~~~~~~------~~~~~~~~~~d~~----~----~~~l~~~-------~--------------~v~~~P~ 155 (438)
.+.++.++|++ +++..+..+.+.+ . -..+... + .|...|+
T Consensus 100 ~~~e~~~~~~i~~f~~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npt 179 (215)
T 2i3y_A 100 GKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFE 179 (215)
T ss_dssp TTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTC
T ss_pred CcCCCCCHHHHHHHHHhccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCce
Confidence 24577888887 6654322222111 0 0112211 1 1233489
Q ss_pred EEEecCCCCCCCcccccc
Q 013684 156 LVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 156 ~~lvd~~~~~G~v~~~~~ 173 (438)
.||||+ +|+++.+..
T Consensus 180 tfLID~---~G~vv~~~~ 194 (215)
T 2i3y_A 180 KFLVGP---DGIPVMRWS 194 (215)
T ss_dssp EEEECT---TSCEEEEEC
T ss_pred EEEECC---CCeEEEEeC
Confidence 999999 999987753
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-17 Score=144.43 Aligned_cols=118 Identities=12% Similarity=0.115 Sum_probs=99.0
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCC--EEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGK--VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk--~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
.+|..+|+|+ +.+.+|+.+++++++|| +++|+|| ++||++|+.++|.|+++++++++++ +|++|+.
T Consensus 8 ~~G~~~P~f~--------l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~---~vv~is~ 76 (159)
T 2a4v_A 8 EIGDPIPDLS--------LLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA---AVFGLSA 76 (159)
T ss_dssp CTTCBCCSCE--------EECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC---EEEEEES
T ss_pred CCCCCCCCeE--------EECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC---cEEEEeC
Confidence 4799999999 89999999999999887 8999997 9999999999999999999998763 8999999
Q ss_pred CCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc------eEEEecCCCCCCCcccccc
Q 013684 115 DEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP------CLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 115 D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P------~~~lvd~~~~~G~v~~~~~ 173 (438)
| +.+..++|.+++++....+.|.+ ..+.+.|++...| +++|| + +|+++....
T Consensus 77 d-~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~p~~g~~~~~~li-~---~G~i~~~~~ 134 (159)
T 2a4v_A 77 D-SVTSQKKFQSKQNLPYHLLSDPK--REFIGLLGAKKTPLSGSIRSHFIF-V---DGKLKFKRV 134 (159)
T ss_dssp C-CHHHHHHHHHHHTCSSEEEECTT--CHHHHHHTCBSSSSSCBCCEEEEE-E---TTEEEEEEE
T ss_pred C-CHHHHHHHHHHhCCCceEEECCc--cHHHHHhCCcccccCCccceEEEE-c---CCEEEEEEc
Confidence 8 56778888886654322222433 6789999999888 88999 9 999987753
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-17 Score=144.58 Aligned_cols=117 Identities=14% Similarity=0.099 Sum_probs=94.9
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccC-CccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|..+|+|+ +.+.+|+.+++++++||+++|+||++| |++|+.++|.|++++++ . ++++++|++|
T Consensus 19 ~~G~~~P~f~--------l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~--~v~vv~Is~D- 84 (175)
T 1xvq_A 19 AVGSPAPAFT--------LTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---S--GATVLCVSKD- 84 (175)
T ss_dssp CTTSBCCCCE--------EECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---T--TCEEEEEESS-
T ss_pred CcCCcCCCeE--------EECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---c--CCEEEEEECC-
Confidence 4799999999 899999999999999999999999999 99999999999999988 3 3999999997
Q ss_pred CHHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcCcc---------ceEEEecCCCCCCCcccccc
Q 013684 117 DLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEGI---------PCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~---------P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+..++|.+++++..++ +.|.. ..+.+.|++... |+++|||+ +|+++....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~g~~~p~~~lid~---~G~I~~~~~ 146 (175)
T 1xvq_A 85 LPFAQKRFCGAEGTENVMPASAFR--DSFGEDYGVTIADGPMAGLLARAIVVIGA---DGNVAYTEL 146 (175)
T ss_dssp CHHHHTTCC------CEEEEECTT--SSHHHHTTCBBCSSTTTTSBCSEEEEECT---TSBEEEEEE
T ss_pred CHHHHHHHHHHcCCCCceEeeCCH--HHHHHHhCCcccccccCCcccceEEEECC---CCeEEEEEE
Confidence 456677888776652222 22433 678899999877 99999999 999997753
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-17 Score=144.32 Aligned_cols=117 Identities=13% Similarity=0.064 Sum_probs=97.9
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|..+|+|+ +.+.+|+.+++++++||+++|+|| ++||++|+.++|.|+++++++ . ++++++|+.|
T Consensus 22 ~~g~~~P~f~--------l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~--~v~vv~Is~d- 88 (171)
T 2yzh_A 22 KVGDRAPEAV--------VVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--E--GVDVTVVSMD- 88 (171)
T ss_dssp CTTSBCCCEE--------EEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T--TEEEEEEESS-
T ss_pred CCCCcCCceE--------EECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--C--CceEEEEeCC-
Confidence 4789999999 899999999999999999999999 899999999999999999998 3 4999999998
Q ss_pred CHHHHHHhHhcCCc-ccccCCC-hHHHHHHhhhcCcC---------ccceEEEecCCCCCCCcccccc
Q 013684 117 DLNAFNNYRACMPW-LAVPYSD-LETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~~~~~~~~~~~~-~~~~~~d-~~~~~~l~~~~~v~---------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+..++|.+++++ ....+.| .+ ..+ +.|++. .+|+++|||+ +|+++....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~l~D~~~--~~~-~~~gv~~~~~~~~g~~~p~~~liD~---~G~i~~~~~ 150 (171)
T 2yzh_A 89 LPFAQKRFCESFNIQNVTVASDFRY--RDM-EKYGVLIGEGALKGILARAVFIIDK---EGKVAYVQL 150 (171)
T ss_dssp CHHHHHHHHHHTTCCSSEEEECTTT--CGG-GGGTCBBCSSTTTTSBCCEEEEECT---TSBEEEEEE
T ss_pred CHHHHHHHHHHcCCCCeEEeecCcc--CcH-HHhCCEecccccCCceeeEEEEEcC---CCeEEEEEe
Confidence 46678888887655 2222224 33 567 899986 2699999999 999987754
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-17 Score=159.10 Aligned_cols=127 Identities=13% Similarity=0.020 Sum_probs=103.5
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD- 115 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D- 115 (438)
+.+|..+|+|+ ....+ +.+.+|+.+++++++||++||+||++||++|+.++|.|.++++++++.+ ++|++|++|
T Consensus 51 l~vG~~aPdF~--~~~~w-L~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~--v~vi~Vs~d~ 125 (352)
T 2hyx_A 51 LESCGTAPDLK--GITGW-LNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG--LAVIGVHTPE 125 (352)
T ss_dssp CCCCCBCCCCC--SCCEE-ESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEECCS
T ss_pred cCCCCcCCCcc--ccccc-cCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCC--eEEEEEECCc
Confidence 35788899887 00001 4588999999999999999999999999999999999999999998865 999999975
Q ss_pred ----CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 116 ----EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ----~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++.+.++++++++++......|.. ..+.+.|+|..+|+++|||+ +|+++.+..
T Consensus 126 ~~~~d~~~~~~~~~~~~~l~fpv~~D~~--~~l~~~ygV~~~Pt~~lID~---~G~Iv~~~~ 182 (352)
T 2hyx_A 126 YAFEKVPGNVAKGAANLGISYPIALDNN--YATWTNYRNRYWPAEYLIDA---TGTVRHIKF 182 (352)
T ss_dssp SGGGGCHHHHHHHHHHHTCCSCEEECTT--SHHHHHTTCCEESEEEEECT---TSBEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCCccEEeCCc--HHHHHHcCCCccCEEEEEeC---CCeEEEEEc
Confidence 578889999987654322222333 67899999999999999999 999987643
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=99.65 E-value=9.4e-17 Score=150.63 Aligned_cols=121 Identities=20% Similarity=0.202 Sum_probs=98.3
Q ss_pred HHhhccchhHHHHHhhccccc---CCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEE
Q 013684 37 FLIMSLSQWYVQQLRRRMTST---KEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 112 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~---~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~v 112 (438)
+.+|.++|+|+ +. +.+|+.++|++++||+++|+|| ++||++|+.++|.|++++++|++.| ++||+|
T Consensus 62 l~vG~~aPdF~--------l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~g--v~vv~I 131 (254)
T 3tjj_A 62 AKISKPAPYWE--------GTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVAC 131 (254)
T ss_dssp CCTTSBCCCCE--------EEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTT--EEEEEE
T ss_pred cCCCCCCCCcE--------eeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEE
Confidence 34799999999 66 4467899999999999999999 9999999999999999999999876 999999
Q ss_pred ecCCCHHHHHHhHhcC-------CcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 113 SSDEDLNAFNNYRACM-------PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 113 s~D~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++|. .+...++.+.. ++....+.|.+ ..+++.|++. .+|++||||+ +|+|+....
T Consensus 132 S~D~-~~~~~~~~~~~~~~~g~~~~~fp~l~D~~--~~va~~ygv~~~~~g~~~p~tflID~---~G~I~~~~~ 199 (254)
T 3tjj_A 132 SVDS-QFTHLAWINTPRRQGGLGPIRIPLLSDLT--HQISKDYGVYLEDSGHTLRGLFIIDD---KGILRQITL 199 (254)
T ss_dssp ESSC-HHHHHHHHTSCGGGTSCCSCSSCEEECTT--SHHHHHHTCEETTTTEECEEEEEECT---TSBEEEEEE
T ss_pred cCCC-HHHHHHHHHHHHHhcCCcccccceeeCcH--HHHHHHcCCccccCCCccceEEEECC---CCeEEEEEe
Confidence 9984 45566666643 22211122443 6899999996 5899999999 999987754
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.6e-16 Score=150.33 Aligned_cols=110 Identities=16% Similarity=0.154 Sum_probs=96.4
Q ss_pred CCCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHH
Q 013684 215 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 292 (438)
Q Consensus 215 ~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~ 292 (438)
.+|+|+| +.+|+ ++++++++||+|+|+|| +.|||.|..+++.+.+. . .++++|++||.| +.+.
T Consensus 3 k~p~F~l~~~~G~-~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~~------~-------~~~~~v~gis~D-~~~~ 67 (322)
T 4eo3_A 3 RVKHFELLTDEGK-TFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSRE------N-------FEKAQVVGISRD-SVEA 67 (322)
T ss_dssp BCCCCEEEETTSC-EEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHHS------C-------CTTEEEEEEESC-CHHH
T ss_pred CCCCcEEECCCcC-EEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHH------h-------hCCCEEEEEeCC-CHHH
Confidence 5899999 99999 99999999999999999 57999999988876531 1 247999999998 6678
Q ss_pred HHHHHhcCCCcccccCCchhHHHHHhcCc----CceeeEEEECCCCcEEEcc
Q 013684 293 FESYFGTMPWLALPFGDPTIKELTKYFDV----QGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 293 ~~~~~~~~~~~~~p~~~d~~~~l~~~~~v----~~~P~~~lid~~G~i~~~~ 340 (438)
.++|.++++ ++||++.|.++++++.||| ..+|++||||++|+|++..
T Consensus 68 ~~~f~~~~~-l~fp~l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~~ 118 (322)
T 4eo3_A 68 LKRFKEKND-LKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEW 118 (322)
T ss_dssp HHHHHHHHT-CCSEEEECTTCHHHHHTTCEETTEECCEEEEECTTSBEEEEE
T ss_pred HHHHHHhhC-CceEEEEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEEEE
Confidence 888998887 8999999999999999999 4588999999999998763
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-16 Score=141.59 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=98.6
Q ss_pred HHHhhccchhHHHHHhhccccc-CCCCCEEeccc-cCCCEEEE-EEeccCCccch-hhHHHHHHHHHHHhcCCCCEEEEE
Q 013684 36 RFLIMSLSQWYVQQLRRRMTST-KEIGEEVKVSD-LEGKVTAL-YFSANWYPPCG-NFTGVLVDVYEELRNNGSDFEVVF 111 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~-~~~g~~v~l~~-~~gk~vll-~F~a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~iv~ 111 (438)
...+|.++|+|+ +. +.+|+.++|++ ++||+++| +||++|||+|+ .++|.|++++++|++.| +++|+
T Consensus 14 ~~~vG~~aPdf~--------l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~g--v~vv~ 83 (173)
T 3mng_A 14 PIKVGDAIPAVE--------VFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG--VQVVA 83 (173)
T ss_dssp CCCTTCBCCCCE--------EECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEE
T ss_pred CCCCCCCCCCeE--------eeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC--CEEEE
Confidence 345899999999 88 99999999999 59996655 55599999999 69999999999999877 99997
Q ss_pred -EecCCCHHHHHHhHhcCCcc--cccCCChHHHHHHhhhcCcC-------------ccceEEEecCCCCCCCcccccc
Q 013684 112 -VSSDEDLNAFNNYRACMPWL--AVPYSDLETKKALNRKFDIE-------------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 112 -vs~D~~~~~~~~~~~~~~~~--~~~~~d~~~~~~l~~~~~v~-------------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
||.| +.+..++|.++.+.. .....|.+ .++++.||+. ..|+++||| +|+|++...
T Consensus 84 ~iS~D-~~~~~~~f~~~~~~~~~fp~l~D~~--~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID----dG~I~~~~v 154 (173)
T 3mng_A 84 CLSVN-DAFVTGEWGRAHKAEGKVRLLADPT--GAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ----DGIVKALNV 154 (173)
T ss_dssp EEESS-CHHHHHHHHHHTTCTTTCEEEECTT--CHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE----TTEEEEEEE
T ss_pred EEcCC-CHHHHHHHHHHhCCCCceEEEECCC--hHHHHHhCCCcccccccccCCcceEEEEEEEE----CCEEEEEEE
Confidence 9988 567788888877654 22233544 7889999885 359999998 899987765
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.8e-17 Score=144.69 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=98.3
Q ss_pred HHhhccchhHHHHHhhcccccCC--CC-CEEeccc-cCCCE-EEEEEeccCCccchh-hHHHHHHHHHHHhcCCCCEE-E
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKE--IG-EEVKVSD-LEGKV-TALYFSANWYPPCGN-FTGVLVDVYEELRNNGSDFE-V 109 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~--~g-~~v~l~~-~~gk~-vll~F~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~-i 109 (438)
+.+|.++|+|+ +.+. +| +.++|++ ++||+ ||++||++|||+|+. ++|.|++++++|++.| ++ |
T Consensus 26 l~vG~~aPdf~--------l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~v 95 (184)
T 3uma_A 26 IAVGDKLPNAT--------FKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARG--VDDI 95 (184)
T ss_dssp CCTTCBCCCCE--------EEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEE
T ss_pred CCCCCCCCCcE--------eecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcC--CCEE
Confidence 35899999999 8888 99 9999999 89995 555667999999999 7999999999999877 88 9
Q ss_pred EEEecCCCHHHHHHhHhcCCcc--cccCCChHHHHHHhhhcCcC-----------ccceEEEecCCCCCCCcccccc
Q 013684 110 VFVSSDEDLNAFNNYRACMPWL--AVPYSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 110 v~vs~D~~~~~~~~~~~~~~~~--~~~~~d~~~~~~l~~~~~v~-----------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++||.| +.+..++|.++.+.. .....|.+ ..+++.||+. ..|+++|| . +|+|++...
T Consensus 96 v~Is~d-~~~~~~~f~~~~~~~~~fp~l~D~~--~~va~~yGv~~~~~~~g~g~~~~r~tfiI-d---dG~I~~~~~ 165 (184)
T 3uma_A 96 AVVAVN-DLHVMGAWATHSGGMGKIHFLSDWN--AAFTKAIGMEIDLSAGTLGIRSKRYSMLV-E---DGVVKALNI 165 (184)
T ss_dssp EEEESS-CHHHHHHHHHHHTCTTTSEEEECTT--CHHHHHTTCEEEEGGGTCEEEECCEEEEE-E---TTEEEEEEE
T ss_pred EEEECC-CHHHHHHHHHHhCCCCceEEEEcCc--hHHHHHcCCceeccccCCcccceeEEEEE-C---CCEEEEEEE
Confidence 999998 567788888876654 22233544 7899999985 35889999 5 999987765
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-16 Score=139.87 Aligned_cols=122 Identities=20% Similarity=0.324 Sum_probs=97.7
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCcc-chhhHHHHHHHHHHHhcCC-CCEEEEEEecC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNNG-SDFEVVFVSSD 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~~~iv~vs~D 115 (438)
++|..+|+|+ +.+.+| .+++++++||+++|+||++||++ |+.++|.|.++++++++.+ .++++++|++|
T Consensus 11 ~~G~~~p~f~--------l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d 81 (172)
T 2k6v_A 11 LLNPKPVDFA--------LEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVD 81 (172)
T ss_dssp EEEEEECCCE--------EECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESC
T ss_pred ccCCCCCCeE--------EEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEEC
Confidence 3688899999 899999 99999999999999999999997 9999999999999987641 24999999998
Q ss_pred C---CHHHHHHhHhcCC--cccccCCChHHHHHHhhhcC---------------cCccceEEEecCCCCCCCcccccc
Q 013684 116 E---DLNAFNNYRACMP--WLAVPYSDLETKKALNRKFD---------------IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ~---~~~~~~~~~~~~~--~~~~~~~d~~~~~~l~~~~~---------------v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
. +.+.+++|.++++ |..+.. +......+.+.|+ +.++|+++||| +|+++.+..
T Consensus 82 ~~~d~~~~~~~~~~~~~~~~~~l~d-~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid----~G~i~~~~~ 154 (172)
T 2k6v_A 82 PERDPPEVADRYAKAFHPSFLGLSG-SPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK----EGRLVLLYS 154 (172)
T ss_dssp TTTCCHHHHHHHHHHHCTTEEEECC-CHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE----TTEEEEEEC
T ss_pred CCCCCHHHHHHHHHHhCCCcEEEeC-CHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE----CCEEEEEEC
Confidence 4 5678888888655 443332 2222256766665 46889999999 898887654
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-16 Score=146.12 Aligned_cols=119 Identities=13% Similarity=0.232 Sum_probs=97.3
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCC-EEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGK-VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
.+|+.+|+|+ +.+.+| .+++++++|| +++|+|| ++|||+|+.+++.|++++++|+++| ++||+||+|
T Consensus 4 ~iG~~aPdF~--------l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~--v~vigIS~D 72 (233)
T 2v2g_A 4 TLGEVFPNFE--------ADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRG--VKLIALSCD 72 (233)
T ss_dssp CTTCBCCCCE--------EEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESS
T ss_pred CCCCCCCCcE--------EecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcC--CEEEEEcCC
Confidence 5799999999 899999 8999999998 9999998 9999999999999999999999876 999999998
Q ss_pred CCHHHHHHhHh------cC--CcccccCCChHHHHHHhhhcCcC------------ccceEEEecCCCCCCCcccccc
Q 013684 116 EDLNAFNNYRA------CM--PWLAVPYSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ~~~~~~~~~~~------~~--~~~~~~~~d~~~~~~l~~~~~v~------------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
. .+...+|.+ +. ++......|.+ .++++.|++. .+|++||||+ +|+++....
T Consensus 73 ~-~~~~~~~~~~i~~~~~~~~~~~fpil~D~~--~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~---~G~I~~~~~ 144 (233)
T 2v2g_A 73 N-VADHKEWSEDVKCLSGVKGDMPYPIIADET--RELAVKLGMVDPDERTSTGMPLTCRAVFIIGP---DKKLKLSIL 144 (233)
T ss_dssp C-HHHHHHHHHHHHHHHTCCSSCSSCEEECTT--CHHHHHTTCEEEEEECTTCCEEECEEEEEECT---TSBEEEEEE
T ss_pred C-HHHHHHHHHHHHHhhCcccCCceEEEECCh--HHHHHHhCCcCcccccCCCcccccceEEEECC---CCEEEEEEe
Confidence 5 455556665 33 32211122433 6789999985 5899999999 999987754
|
| >1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-16 Score=122.91 Aligned_cols=81 Identities=33% Similarity=0.673 Sum_probs=73.5
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhccCCCccccccc-ccccccccccCCCCCcccCccCCCCCceeEEcCCCCCCccCccc
Q 013684 349 QENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGH-RHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCV 427 (438)
Q Consensus 349 g~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~c~~C~~~~~~w~~~c~~c~~~~~~~c~ 427 (438)
|+++||||++.+.+|.+.+.+.-+.+|..+.+..| +|+|.+.. ...++|+.|++.+.+|.|+|..|+|+||+.||
T Consensus 1 ~~~a~pfte~~~~~~~~~lhe~Ca~lP~~i~Hp~Hp~H~L~L~~----~~~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca 76 (89)
T 1v5n_A 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTR----VQVYTCDKCEEEGTIWSYHCDECDFDLHAKCA 76 (89)
T ss_dssp CCCCCCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEEC----CSSCCCTTTSCCCCSCEEECTTTCCCCCHHHH
T ss_pred CCcccccCHHHHHHHHHHHhHHHHcCCceecCCCCCCCccEEee----CCCeEeCCCCCcCCCcEEEcCCCCCeEcHHhc
Confidence 67899999999999999999999999999999999 69999843 34799999999999999999999999999999
Q ss_pred cccCCC
Q 013684 428 RAVDRG 433 (438)
Q Consensus 428 ~~~~~~ 433 (438)
+.++.+
T Consensus 77 ~~p~~~ 82 (89)
T 1v5n_A 77 LNEDTK 82 (89)
T ss_dssp HCSSCS
T ss_pred CCCCcc
Confidence 866543
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=122.26 Aligned_cols=73 Identities=23% Similarity=0.467 Sum_probs=63.2
Q ss_pred ccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 233 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 233 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
+..+|+|+|+|||+||++|+.+.|.+.++++.++ ++.++.|++|..
T Consensus 17 ~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-----------~~~~~~vd~d~~----------------------- 62 (105)
T 3zzx_A 17 EAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-----------DVVFLKVDVDEC----------------------- 62 (105)
T ss_dssp HTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TEEEEEEETTTC-----------------------
T ss_pred hcCCCEEEEEEECCCCCCccCCCcchhhhhhccC-----------CeEEEEEecccC-----------------------
Confidence 3457899999999999999999999999987765 467888887755
Q ss_pred HHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 313 KELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 313 ~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.++++.|+|.++||++++ ++|+++.+.
T Consensus 63 ~~l~~~~~V~~~PT~~~~-~~G~~v~~~ 89 (105)
T 3zzx_A 63 EDIAQDNQIACMPTFLFM-KNGQKLDSL 89 (105)
T ss_dssp HHHHHHTTCCBSSEEEEE-ETTEEEEEE
T ss_pred HHHHHHcCCCeecEEEEE-ECCEEEEEE
Confidence 678999999999999999 899999873
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-15 Score=125.38 Aligned_cols=113 Identities=12% Similarity=0.153 Sum_probs=84.7
Q ss_pred CCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 013684 216 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 294 (438)
Q Consensus 216 ~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 294 (438)
.++++. +.+|. .......+||+++|+||++||++|+.+.|.+.++++++++ ++.++.|+++.+.
T Consensus 6 ~~~l~~~~~~~~-~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~----------~v~~~~v~~~~d~---- 70 (126)
T 2l57_A 6 IKQINFQSINVV-ENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG----------KFNIYYARLEEEK---- 70 (126)
T ss_dssp SSCTTTTCCSEE-SSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS----------SCEEEEEETTSSH----
T ss_pred cCCCCccccchh-HHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC----------CeEEEEEeCCCCc----
Confidence 455555 66665 4445566789999999999999999999999999988763 5899999944222
Q ss_pred HHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccC
Q 013684 295 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL 374 (438)
Q Consensus 295 ~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~ 374 (438)
..++++.|+|.++|+++++|++|+++.+. .|. .+ .++|.+.|++.+...
T Consensus 71 -----------------~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~-------~G~----~~---~~~l~~~l~~~~~~~ 119 (126)
T 2l57_A 71 -----------------NIDLAYKYDANIVPTTVFLDKEGNKFYVH-------QGL----MR---KNNIETILNSLGVKE 119 (126)
T ss_dssp -----------------HHHHHHHTTCCSSSEEEEECTTCCEEEEE-------ESC----CC---HHHHHHHHHHHCCCC
T ss_pred -----------------hHHHHHHcCCcceeEEEEECCCCCEEEEe-------cCC----CC---HHHHHHHHHHHhccc
Confidence 36789999999999999999999998763 231 22 245666666655443
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-16 Score=143.93 Aligned_cols=120 Identities=13% Similarity=0.191 Sum_probs=94.6
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCC--EEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGK--VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk--~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
+.+|+.+|+|+ +.+.+| .+++++++|| +||++||++|||+|..+++.|++++++|+++| ++||+||+
T Consensus 5 l~~G~~aP~F~--------l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~IS~ 73 (224)
T 1prx_A 5 LLLGDVAPNFE--------ANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSI 73 (224)
T ss_dssp CCTTCBCCCCE--------EEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEES
T ss_pred CCCcCCCCCcE--------EecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCC--CEEEEEcC
Confidence 45899999999 899999 8999999988 56666789999999999999999999999876 99999999
Q ss_pred CCCHHHHHHhHhc----------CCcccccCCChHHHHHHhhhcCcC------------ccceEEEecCCCCCCCccccc
Q 013684 115 DEDLNAFNNYRAC----------MPWLAVPYSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 115 D~~~~~~~~~~~~----------~~~~~~~~~d~~~~~~l~~~~~v~------------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|. .+...++.+. .++......|.+ ..+++.|++. .+|+++|||+ +|+++...
T Consensus 74 D~-~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~--~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~---~G~I~~~~ 147 (224)
T 1prx_A 74 DS-VEDHLAWSKDINAYNSEEPTEKLPFPIIDDRN--RELAILLGMLDPAEKDEKGMPVTARVVFVFGP---DKKLKLSI 147 (224)
T ss_dssp SC-HHHHHHHHHHHHHHTTSCCCSCCSSCEEECTT--CHHHHHTTSSCSCTTCSSSCCTTCCEEEEECT---TSBEEEEE
T ss_pred CC-HHHHHHHHHHHHHhhCcccccCcCcceeecCc--hHHHHHhCCCCcccccCCCccccceEEEEECC---CCEEEEEE
Confidence 85 3444444442 332211122433 6788999884 4799999999 99998775
Q ss_pred c
Q 013684 173 G 173 (438)
Q Consensus 173 ~ 173 (438)
.
T Consensus 148 ~ 148 (224)
T 1prx_A 148 L 148 (224)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-15 Score=127.02 Aligned_cols=84 Identities=23% Similarity=0.385 Sum_probs=75.3
Q ss_pred CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCC
Q 013684 222 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP 301 (438)
Q Consensus 222 ~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 301 (438)
+.+|. ...++.++|++++|+||++||++|+.+.|.+.++++++++ ++.++.|++|.+
T Consensus 38 ~~~~~-~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~------------ 94 (141)
T 3hxs_A 38 DYENH-SKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG----------KIYIYKVNVDKE------------ 94 (141)
T ss_dssp CCSSC-CCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC------------
T ss_pred ccccc-hhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------ceEEEEEECCCC------------
Confidence 77788 8889999999999999999999999999999999998875 388999988865
Q ss_pred CcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 302 WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 302 ~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..+++.|+|.++|+++++|++|+++..
T Consensus 95 -----------~~~~~~~~v~~~Pt~~~~~~~g~~~~~ 121 (141)
T 3hxs_A 95 -----------PELARDFGIQSIPTIWFVPMKGEPQVN 121 (141)
T ss_dssp -----------HHHHHHTTCCSSSEEEEECSSSCCEEE
T ss_pred -----------HHHHHHcCCCCcCEEEEEeCCCCEEEE
Confidence 578999999999999999999998743
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.2e-16 Score=140.43 Aligned_cols=116 Identities=6% Similarity=0.093 Sum_probs=96.2
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccC-Cccch-----hhHHHHHHHHHHHhcCCCCEEEEE
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANW-YPPCG-----NFTGVLVDVYEELRNNGSDFEVVF 111 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~w-C~~C~-----~~~p~l~~l~~~~~~~~~~~~iv~ 111 (438)
.+|.++|+|+ +.+.+|+.++|++++||+++|+||+.| ||+|. .+++.|.++ + .| ++|++
T Consensus 23 ~vG~~APdFt--------L~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~g--v~Vvg 87 (224)
T 3keb_A 23 RKGDYLPSFM--------LVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PH--LKLIV 87 (224)
T ss_dssp CTTCBCCCCE--------EEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TT--SEEEE
T ss_pred CCCCCCCCeE--------EECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CC--CEEEE
Confidence 4799999999 899999999999999999999999988 99999 888888877 3 33 99999
Q ss_pred EecCCCHHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcCc---------cceEEEecCCCCCCCcccccc
Q 013684 112 VSSDEDLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEG---------IPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 112 vs~D~~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~---------~P~~~lvd~~~~~G~v~~~~~ 173 (438)
||.| +....++|.++++...++ .+|.. ...+++.||+.. .|++||||+ +|+|++...
T Consensus 88 IS~D-s~~~~~~f~~~~gl~~fplLsD~~-~~~vak~yGv~~~~~~~~G~~~p~tfvID~---dG~I~~~~~ 154 (224)
T 3keb_A 88 ITVD-SPSSLARARHEHGLPNIALLSTLR-GRDFHKRYGVLITEYPLSGYTSPAIILADA---ANVVHYSER 154 (224)
T ss_dssp EESS-CHHHHHHHHHHHCCTTCEEEESTT-CTTHHHHTTCBCCSTTSTTCBCCEEEEECT---TCBEEEEEE
T ss_pred EECC-CHHHHHHHHHHcCCCCceEEEcCC-chHHHHHhCCccccccccCCccCEEEEEcC---CCEEEEEEe
Confidence 9998 567788888877653222 33431 168899999864 799999999 999998765
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-14 Score=130.98 Aligned_cols=70 Identities=21% Similarity=0.385 Sum_probs=61.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+|||+||++|+.+.|.+.++++++++.+.++.++.|+++.+.. ..+++.|+
T Consensus 29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~----------------------~~l~~~~~ 86 (244)
T 3q6o_A 29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETN----------------------SAVCRDFN 86 (244)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTT----------------------HHHHHHTT
T ss_pred CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhh----------------------HHHHHHcC
Confidence 35999999999999999999999999999998743459999998864432 78999999
Q ss_pred cCccceEEEecC
Q 013684 150 IEGIPCLVVLQP 161 (438)
Q Consensus 150 v~~~P~~~lvd~ 161 (438)
|.++|++++++.
T Consensus 87 v~~~Pt~~~~~~ 98 (244)
T 3q6o_A 87 IPGFPTVRFFXA 98 (244)
T ss_dssp CCSSSEEEEECT
T ss_pred CCccCEEEEEeC
Confidence 999999999995
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-16 Score=136.80 Aligned_cols=121 Identities=14% Similarity=0.209 Sum_probs=95.0
Q ss_pred HHHhhccchhHHHHHhhcccccCC----CC-----CEEecccc-CCC-EEEEEEeccCCccchhh-HHHHHHHHHHHhcC
Q 013684 36 RFLIMSLSQWYVQQLRRRMTSTKE----IG-----EEVKVSDL-EGK-VTALYFSANWYPPCGNF-TGVLVDVYEELRNN 103 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~~~----~g-----~~v~l~~~-~gk-~vll~F~a~wC~~C~~~-~p~l~~l~~~~~~~ 103 (438)
...+|.++|+|+ +.+. +| +.++++++ +|| +||++||++|||+|+.+ +|.|+++++++++.
T Consensus 6 g~~~g~~aP~f~--------l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~ 77 (171)
T 2pwj_A 6 GTDILSAASNVS--------LQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAK 77 (171)
T ss_dssp ----CCCSSSBC--------CCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHT
T ss_pred cccccCcCCCeE--------EecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 345677999999 8887 57 89999996 996 77789999999999999 99999999999987
Q ss_pred CCCEE-EEEEecCCCHHHHHHhHhcCCc-cccc-CCChHHHHHHhhhcCcCc-----------cceEEEecCCCCCCCcc
Q 013684 104 GSDFE-VVFVSSDEDLNAFNNYRACMPW-LAVP-YSDLETKKALNRKFDIEG-----------IPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 104 ~~~~~-iv~vs~D~~~~~~~~~~~~~~~-~~~~-~~d~~~~~~l~~~~~v~~-----------~P~~~lvd~~~~~G~v~ 169 (438)
| ++ |++||.| +.+..+++.+++++ ..+| +.|.+ ..+++.|++.. .|+.++|+ +|+|+
T Consensus 78 g--~~~vv~Is~d-~~~~~~~~~~~~~~~~~fp~l~D~~--~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~----~G~I~ 148 (171)
T 2pwj_A 78 G--VDSVICVAIN-DPYTVNAWAEKIQAKDAIEFYGDFD--GSFHKSLELTTDLSAGLLGIRSERWSAYVV----DGKVK 148 (171)
T ss_dssp T--CSEEEEEESS-CHHHHHHHHHHTTCTTTSEEEECTT--CHHHHHHTCEEECTTTTCCEEECCEEEEEE----TTEEE
T ss_pred C--CCEEEEEeCC-CHHHHHHHHHHhCCCCceEEEECCc--cHHHHHhCCccccccccCCcccceeEEEEE----CCEEE
Confidence 6 88 9999998 45678888887774 1233 23443 68889998853 56788887 89988
Q ss_pred cccc
Q 013684 170 LHDG 173 (438)
Q Consensus 170 ~~~~ 173 (438)
+...
T Consensus 149 ~~~~ 152 (171)
T 2pwj_A 149 ALNV 152 (171)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7654
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-16 Score=141.61 Aligned_cols=119 Identities=12% Similarity=0.173 Sum_probs=93.1
Q ss_pred HhhccchhHHHHHhhcccccCC--CCCEEeccccCCC--EEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKE--IGEEVKVSDLEGK--VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~--~g~~v~l~~~~gk--~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
.+|+.+|+|+ +.+. +| .+++++++|| +||++||++|||+|..+++.|++++++|+++| ++||+||
T Consensus 4 ~iG~~aP~F~--------l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~vS 72 (220)
T 1xcc_A 4 HLGATFPNFT--------AKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFS 72 (220)
T ss_dssp CTTCBCCCCE--------ECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEE
T ss_pred CCCCCCCCcE--------eecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEe
Confidence 5799999999 8898 99 8999999998 45555689999999999999999999999875 9999999
Q ss_pred cCCCHHHHHHhHh-------cCCcccccCCChHHHHHHhhhcCcC------------ccceEEEecCCCCCCCcccccc
Q 013684 114 SDEDLNAFNNYRA-------CMPWLAVPYSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~l~~~~~v~------------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+|. .+..+++.+ +.++......|.+ ..+++.|++. .+|+++|||+ +|+++....
T Consensus 73 ~D~-~~~~~~~~~~i~~~~~~~~~~fpil~D~~--~~va~~ygv~~~~~~~~~g~~~~~p~~flID~---~G~I~~~~~ 145 (220)
T 1xcc_A 73 CNS-KESHDKWIEDIKYYGKLNKWEIPIVCDES--RELANKLKIMDEQEKDITGLPLTCRCLFFISP---EKKIKATVL 145 (220)
T ss_dssp SSC-HHHHHHHHHHHHHHHTCSCCCCCEEECTT--SHHHHHHTCEEEEEECTTSCEEECEEEEEECT---TSBEEEEEE
T ss_pred CCC-HHHHHHHHHHHHHHhcCCCCcceeEECch--hHHHHHhCCCCcccccCCCCCcccceEEEECC---CCEEEEEEe
Confidence 985 333444443 2332211122433 6788999983 4799999999 999987754
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=121.69 Aligned_cols=90 Identities=14% Similarity=0.380 Sum_probs=75.1
Q ss_pred CCCCCccCCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 013684 215 HDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 294 (438)
Q Consensus 215 ~~~~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 294 (438)
..|++. ..+++ .++....+||+++|+||++||++|+.+.|.+.+++++++++ +.++.|++|..
T Consensus 23 ~~~~~~-~~~~~-~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~----------v~~~~vd~d~~----- 85 (128)
T 3ul3_B 23 KVPRLQ-QNGSN-IINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR----------IYLLKVDLDKN----- 85 (128)
T ss_dssp ---CCC-CCCCS-SSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG----------EEEEEEEGGGC-----
T ss_pred cCCccc-cCCcc-HHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC----------eEEEEEECCCC-----
Confidence 455555 55566 67777788999999999999999999999999999999754 88999988755
Q ss_pred HHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 295 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 295 ~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
..+++.|+|.++||++++ ++|+++.+.
T Consensus 86 ------------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~~ 112 (128)
T 3ul3_B 86 ------------------ESLARKFSVKSLPTIILL-KNKTMLARK 112 (128)
T ss_dssp ------------------HHHHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred ------------------HHHHHHcCCCCcCEEEEE-ECCEEEEEe
Confidence 578999999999999999 799988763
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-15 Score=128.31 Aligned_cols=96 Identities=18% Similarity=0.326 Sum_probs=76.1
Q ss_pred hhhcCCCCCc-c-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 211 LLTNHDRGYL-L-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 211 ~~g~~~~~f~-l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
..+..+|+|. + +.++. ...+++.+||+++|+||++||++|+.+.|.+ .++.+.++ ++.++.|+
T Consensus 5 ~~~~~~~~f~~~~~~~~~-~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-----------~~~~~~vd 72 (134)
T 2fwh_A 5 AQTQTHLNFTQIKTVDEL-NQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-----------DTVLLQAN 72 (134)
T ss_dssp -----CCCCEECCSHHHH-HHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-----------TSEEEEEE
T ss_pred cccccCCCcEEecCHHHH-HHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-----------CcEEEEEe
Confidence 3466788887 4 55565 6667778899999999999999999999988 77877764 47899998
Q ss_pred cCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 286 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
++... +....+++.|+|.++|+++++|++|+++
T Consensus 73 ~~~~~-------------------~~~~~l~~~~~v~~~Pt~~~~d~~G~~v 105 (134)
T 2fwh_A 73 VTAND-------------------AQDVALLKHLNVLGLPTILFFDGQGQEH 105 (134)
T ss_dssp CTTCC-------------------HHHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred CCCCc-------------------chHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence 87532 2357899999999999999999999997
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-15 Score=130.27 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=98.4
Q ss_pred hhhcCCCCCcc-CCCC----------Cceeecccc-CCCEE-EEEEecCCChhhhh-hhHHHHHHHHHHHhhhhhcCCCC
Q 013684 211 LLTNHDRGYLL-GHPP----------DEKVPVSSL-VGKTV-GLYFSARWCIPCEK-FMPKLLSIYQKIKQNLVEKGDAL 276 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g----------~~~~~l~~~-~gk~v-ll~F~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~~~~ 276 (438)
.+|+..|+.++ ...+ + .++++++ +||++ |++||+.|||.|.. ++|.+.+.+++|+++
T Consensus 11 ~~~~~~p~~~~~~~~~~~~~~~~~~~~-~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~-------- 81 (176)
T 4f82_A 11 QVGDALPDAQLFEFIDDAREGCTLGPN-ACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAA-------- 81 (176)
T ss_dssp CTTCBCCCCEEEEEECSCCTTCCSEEE-EEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT--------
T ss_pred hcCCcCCceEEEEecccccccccCCce-EEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhC--------
Confidence 36889999877 2222 4 8999997 99865 55666999999999 999999999999976
Q ss_pred CCE-EEEEEecCCCHHHHHHHHhcCCCcc--cccCCchhHHHHHhcCcC------c-----eeeEEEECCCCcEEEcc
Q 013684 277 EDF-EVVFVSTDRDQTSFESYFGTMPWLA--LPFGDPTIKELTKYFDVQ------G-----IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 277 ~~~-~vv~is~d~~~~~~~~~~~~~~~~~--~p~~~d~~~~l~~~~~v~------~-----~P~~~lid~~G~i~~~~ 340 (438)
++ +|++||+| +....++|.++.+ +. ||++.|.+.++++.||+. + .|++||| ++|+|++..
T Consensus 82 -g~d~VigIS~D-~~~~~~~f~~~~~-l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~ 155 (176)
T 4f82_A 82 -GIDEIWCVSVN-DAFVMGAWGRDLH-TAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLA 155 (176)
T ss_dssp -TCCEEEEEESS-CHHHHHHHHHHTT-CTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEE
T ss_pred -CCCEEEEEeCC-CHHHHHHHHHHhC-CCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEE
Confidence 89 99999999 5778889998887 55 999999999999999983 2 4889999 999999875
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-15 Score=141.34 Aligned_cols=118 Identities=15% Similarity=0.230 Sum_probs=93.7
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEec-ccc--CCCEE-EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKV-SDL--EGKVT-ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l-~~~--~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
.+|+.+|+|+ +.+.+| .+++ +++ +||++ |++||++||++|..+++.|++++++|+++| ++||+||
T Consensus 6 ~iG~~aPdF~--------l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~g--v~VI~VS 74 (249)
T 3a2v_A 6 LIGERFPEME--------VTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLS 74 (249)
T ss_dssp CTTSBCCCEE--------EEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTT--EEEEEEE
T ss_pred CCCCCCCCeE--------EEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCC--cEEEEEE
Confidence 4799999999 889999 7999 999 99964 567899999999999999999999999876 9999999
Q ss_pred cCCCH--HHHHHhHh-----cCCcccccCCChHHHHHHhhhcCcC-------ccceEEEecCCCCCCCcccccc
Q 013684 114 SDEDL--NAFNNYRA-----CMPWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~--~~~~~~~~-----~~~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+|... .+|.+... .++|+. ..|.+ ..+++.|++. .+|+++|||+ +|+++....
T Consensus 75 ~Ds~~~~~~w~~~~~~~~~~~i~fPi--l~D~~--~~ia~~ygv~~~~~g~~~~p~~fIID~---dG~I~~~~~ 141 (249)
T 3a2v_A 75 VDSVFSHIKWKEWIERHIGVRIPFPI--IADPQ--GTVARRLGLLHAESATHTVRGVFIVDA---RGVIRTMLY 141 (249)
T ss_dssp SSCHHHHHHHHHHHHHHTCCCCCSCE--EECTT--SHHHHHHTCCCTTCSSSCCEEEEEECT---TSBEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceeE--EECCc--hHHHHHhCCccccCCCcccceEEEECC---CCeEEEEEe
Confidence 98532 22333222 223322 22433 6889999997 8999999999 999987654
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.9e-15 Score=135.00 Aligned_cols=121 Identities=16% Similarity=0.245 Sum_probs=96.2
Q ss_pred HHHhhccchhHHHHHhhccccc---CCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEE
Q 013684 36 RFLIMSLSQWYVQQLRRRMTST---KEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVF 111 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~---~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~ 111 (438)
.+.||.++|+|+ ++ +.++++++|++++||+++|+|| +.|||.|..+++.|++.+++|++.| ++|++
T Consensus 22 ~~~VG~~APdF~--------l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g--~~vig 91 (216)
T 3sbc_A 22 VAQVQKQAPTFK--------KTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQG--AQVLF 91 (216)
T ss_dssp CCCTTSBCCCCC--------EEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTT--EEEEE
T ss_pred hhhcCCcCCCCC--------CcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCC--ceEEE
Confidence 356899999999 54 6777899999999999999999 9999999999999999999999986 99999
Q ss_pred EecCCCHHHHHHhHhcC----Cc--cccc-CCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCccccc
Q 013684 112 VSSDEDLNAFNNYRACM----PW--LAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 112 vs~D~~~~~~~~~~~~~----~~--~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
||.|. ......+.+.. +. ..+| ..|.+ .++++.||+. ..+.+||||+ +|.|.+..
T Consensus 92 iS~Ds-~~sh~aw~~~~~~~~~~~~l~fpllsD~~--~~vak~YGv~~~~~g~~~R~tFiID~---~G~Ir~~~ 159 (216)
T 3sbc_A 92 ASTDS-EYSLLAWTNIPRKEGGLGPINIPLLADTN--HSLSRDYGVLIEEEGVALRGLFIIDP---KGVIRHIT 159 (216)
T ss_dssp EESSC-HHHHHHHHTSCGGGTCCCSCSSCEEECTT--SHHHHHHTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred eecCc-hhhHHHHHHHHHHhCCccCcccceEeCCC--CHHHHHcCCeeccCCceeeEEEEECC---CCeEEEEE
Confidence 99994 34444444322 11 1222 22443 7999999983 5689999999 99987654
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-15 Score=138.58 Aligned_cols=140 Identities=21% Similarity=0.297 Sum_probs=95.1
Q ss_pred CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCC
Q 013684 222 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP 301 (438)
Q Consensus 222 ~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 301 (438)
..+++ .+.....+|++++|+|||+||++|+.+.|.|.++++++++. +.++.++.|+++.+
T Consensus 19 ~l~~~-~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~~~~~~vd~~~~------------ 78 (241)
T 3idv_A 19 VLNDA-NFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDK-------DPPIPVAKIDATSA------------ 78 (241)
T ss_dssp EECTT-THHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTS-------SSCCCEEEEETTTC------------
T ss_pred Eeccc-CHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhc-------CCceEEEEEeccCC------------
Confidence 44555 45444457899999999999999999999999999999865 34588888888755
Q ss_pred CcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccC----CCc
Q 013684 302 WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL----PRS 377 (438)
Q Consensus 302 ~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~----~~~ 377 (438)
..+++.|+|.++||++++ ++|+.+...| ..+. ++|.+.+++..... +..
T Consensus 79 -----------~~l~~~~~v~~~Pt~~~~-~~g~~~~~~g------------~~~~---~~l~~~i~~~~~~~~~~~~~~ 131 (241)
T 3idv_A 79 -----------SVLASRFDVSGYPTIKIL-KKGQAVDYEG------------SRTQ---EEIVAKVREVSQPDWTPPPEV 131 (241)
T ss_dssp -----------HHHHHHTTCCSSSEEEEE-ETTEEEECCS------------CSCH---HHHHHHHHHHHSTTCCCCCCS
T ss_pred -----------HHHHHhcCCCcCCEEEEE-cCCCcccccC------------cccH---HHHHHHHhhccCccccccccc
Confidence 678999999999999999 5677664332 1222 44555555554432 111
Q ss_pred ccccc--------cccccccccccCCCCCcccCccCCCCCcee
Q 013684 378 EFHIG--------HRHELNLVSEGTGGGPFICCDCDEQGSGWA 412 (438)
Q Consensus 378 ~~~~~--------~~~~~~~~~~~~~~~~~~c~~C~~~~~~w~ 412 (438)
..... ..+... +..+.++||++|+.+.+.|.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~----~v~f~a~wC~~C~~~~p~~~ 170 (241)
T 3idv_A 132 TLVLTKENFDEVVNDADII----LVEFYAPWCGHCKKLAPEYE 170 (241)
T ss_dssp SEECCTTTHHHHHHHCSEE----EEEEECTTCTGGGGTHHHHH
T ss_pred ceeccHHHHHHhhccCCeE----EEEEECCCCHHHHHhHHHHH
Confidence 11111 112222 24566899999998766553
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-15 Score=127.90 Aligned_cols=93 Identities=24% Similarity=0.410 Sum_probs=73.1
Q ss_pred CCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhc
Q 013684 224 PPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT 299 (438)
Q Consensus 224 ~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 299 (438)
.++ .+.++..+||+++|+|| ++||++|+.+.|.+ .++.+.+.. ++.++.|+++....
T Consensus 36 ~~~-~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~----------~~~~v~vd~~~~~~-------- 96 (154)
T 2ju5_A 36 YAE-ALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV----------HLHMVEVDFPQKNH-------- 96 (154)
T ss_dssp HHH-HHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH----------HCEEEEEECCSSCC--------
T ss_pred HHH-HHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC----------cEEEEEecCccccC--------
Confidence 344 66777788999999999 99999999999999 677655543 47888888775420
Q ss_pred CCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 300 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 300 ~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+.+++ .+....+++.|+|.++||++|+|++|+++.+
T Consensus 97 ---~~~~~-~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~ 132 (154)
T 2ju5_A 97 ---QPEEQ-RQKNQELKAQYKVTGFPELVFIDAEGKQLAR 132 (154)
T ss_dssp ---CCHHH-HHHHHHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred ---CChhh-HhhHHHHHHHcCCCCCCEEEEEcCCCCEEEE
Confidence 22222 3456789999999999999999999999987
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-14 Score=122.11 Aligned_cols=114 Identities=17% Similarity=0.276 Sum_probs=86.5
Q ss_pred hcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHH
Q 013684 213 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 291 (438)
Q Consensus 213 g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~ 291 (438)
+...++..+ +.++. .+......+++++|+||++||++|+.+.|.|.++++++++ ++.++.|++|.+
T Consensus 32 ~~~~~~~~v~~l~~~-~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~----------~~~~~~vd~~~~-- 98 (148)
T 3p2a_A 32 GHSLFDGEVINATAE-TLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG----------KVRFVKVNTEAE-- 98 (148)
T ss_dssp CCBTTCCCCEECCTT-THHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC--
T ss_pred CCccccCCceecCHH-HHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCC----------ceEEEEEECcCC--
Confidence 334455566 77777 6654446789999999999999999999999999998864 488999988765
Q ss_pred HHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHh
Q 013684 292 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA 371 (438)
Q Consensus 292 ~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~ 371 (438)
..+++.|+|.++||++++ ++|+++.+. .|. .+ .++|.+.|++.+
T Consensus 99 ---------------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~~-------~G~----~~---~~~l~~~l~~~l 142 (148)
T 3p2a_A 99 ---------------------PALSTRFRIRSIPTIMLY-RNGKMIDML-------NGA----VP---KAPFDNWLDEQL 142 (148)
T ss_dssp ---------------------HHHHHHTTCCSSSEEEEE-ETTEEEEEE-------SSC----CC---HHHHHHHHHHHH
T ss_pred ---------------------HHHHHHCCCCccCEEEEE-ECCeEEEEE-------eCC----CC---HHHHHHHHHHHh
Confidence 578999999999999999 799988763 232 22 355666666666
Q ss_pred ccCC
Q 013684 372 KNLP 375 (438)
Q Consensus 372 ~~~~ 375 (438)
...|
T Consensus 143 ~~~~ 146 (148)
T 3p2a_A 143 SRDP 146 (148)
T ss_dssp HSCC
T ss_pred cccC
Confidence 5544
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=142.08 Aligned_cols=190 Identities=14% Similarity=0.191 Sum_probs=114.6
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+|||+||++|+.+.|.|.++++++++.+.++.++.|++|.+.. .++++.|+
T Consensus 29 ~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~----------------------~~l~~~~~ 86 (519)
T 3t58_A 29 SSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETN----------------------SAVCREFN 86 (519)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGG----------------------HHHHHHTT
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCcccc----------------------HHHHHHcC
Confidence 35899999999999999999999999999998743458999998875432 78999999
Q ss_pred cCccceEEEecCCCCCCCcccccchhHHhhhCCCCccCChhHHHH-HHHHHHhhhhHHHHHhhhhcCCCCCccCCCCCce
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEE-LQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEK 228 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l~~-L~~~~~~~~~~~~~~~~~g~~~~~f~l~~~g~~~ 228 (438)
|.++|+++++++...+|+.+.... +. ...+.+.. +......... ......|.+.. .+.. .
T Consensus 87 V~~~PTl~~f~~g~~~G~~~~~~~-------g~----~~~~~L~~~l~~~l~~~~~------~~P~~~p~l~~-it~~-~ 147 (519)
T 3t58_A 87 IAGFPTVRFFQAFTKNGSGATLPG-------AG----ANVQTLRMRLIDALESHRD------TWPPACPPLEP-AKLN-D 147 (519)
T ss_dssp CCSBSEEEEECTTCCSCCCEEECC-------SS----CCHHHHHHHHHHHHTTCCS------CCCTTCCCCSB-CCHH-H
T ss_pred CcccCEEEEEcCcccCCCceeEec-------CC----CCHHHHHHHHHHHHhhccc------cCCCCCCccCc-CCHH-H
Confidence 999999999995333444332211 11 11222222 2221111100 00001111211 1111 1
Q ss_pred ee--ccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccc
Q 013684 229 VP--VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALP 306 (438)
Q Consensus 229 ~~--l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p 306 (438)
+. ++.-..++++|.|.... .+...++...+... .++.|..+ .+.+
T Consensus 148 l~~~l~~~~~~~vallF~~~~-------s~~~~~~~ldl~~~--------~~v~v~~v-~~~~----------------- 194 (519)
T 3t58_A 148 IDGFFTRNKADYLALVFERED-------SYLGREVTLDLSQY--------HAVAVRRV-LNTE----------------- 194 (519)
T ss_dssp HTTGGGSCCCSEEEEEEECTT-------CCHHHHHHHHTTTC--------TTEEEEEE-ETTC-----------------
T ss_pred HHHHhccCCCCeEEEEecCCc-------hHHHHHHHHHhhcc--------CCeeEEEe-cCch-----------------
Confidence 10 12223568888887543 22334444444432 34554333 2323
Q ss_pred cCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 307 FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 307 ~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..+.++|||+.+|++++++++|++...
T Consensus 195 ------~~l~~kfgV~~~Pslvl~~~nGk~~~~ 221 (519)
T 3t58_A 195 ------SDLVNKFGVTDFPSCYLLLRNGSVSRV 221 (519)
T ss_dssp ------HHHHHHHTCCCSSEEEEEETTSCEEEC
T ss_pred ------HHHHHHcCCCCCCeEEEEeCCCceeec
Confidence 678999999999999999999987543
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-14 Score=118.42 Aligned_cols=78 Identities=27% Similarity=0.436 Sum_probs=66.9
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHH--HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLL--SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~--~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
..||+++|+||++||++|+.+.|.|. ++.+.++++ +.++.|+++.. +.
T Consensus 27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~----------~~~~~vd~~~~--------------------~~ 76 (133)
T 3fk8_A 27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH----------FEVVKIDVGNF--------------------DR 76 (133)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH----------CEEEEEECTTT--------------------TS
T ss_pred hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC----------EEEEEEeCCcc--------------------cc
Confidence 45889999999999999999999999 999988754 88999988421 11
Q ss_pred hHHHHHhcCc---CceeeEEEECCCCcEEEccc
Q 013684 312 IKELTKYFDV---QGIPCLVIIGPEGKTVTKQG 341 (438)
Q Consensus 312 ~~~l~~~~~v---~~~P~~~lid~~G~i~~~~~ 341 (438)
..++++.|+| .++||++++|++|+++.+..
T Consensus 77 ~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~ 109 (133)
T 3fk8_A 77 NLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTK 109 (133)
T ss_dssp SHHHHHHTTCGGGGCSSEEEEECTTSCEEEECC
T ss_pred hHHHHHHhCCccCCccceEEEECCCCCEEEEec
Confidence 3779999999 99999999999999998754
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-14 Score=121.03 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=62.0
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++|+|.|||+||+||+.+.|.|.+++++++++ +.|+.|++|.. .+
T Consensus 40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~----------v~f~kVDVDe~-----------------------~e 86 (160)
T 2av4_A 40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF----------CVIYLVDITEV-----------------------PD 86 (160)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT----------EEEEEEETTTC-----------------------CT
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC----------cEEEEEECCCC-----------------------HH
Confidence 4589999999999999999999999999999754 78888888865 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEE
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
++.+|+|.++||++++ ++|+.+
T Consensus 87 ~a~~y~V~siPT~~fF-k~G~~v 108 (160)
T 2av4_A 87 FNTMYELYDPVSVMFF-YRNKHM 108 (160)
T ss_dssp TTTTTTCCSSEEEEEE-ETTEEE
T ss_pred HHHHcCCCCCCEEEEE-ECCEEE
Confidence 8999999999999999 788887
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-14 Score=115.98 Aligned_cols=71 Identities=24% Similarity=0.455 Sum_probs=62.7
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
.+||+++|+||++||++|+.+.|.+.+++++++ ++.++.|++|.. .
T Consensus 22 ~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~-----------~~~~~~vd~~~~-----------------------~ 67 (109)
T 3f3q_A 22 AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-----------QADFYKLDVDEL-----------------------G 67 (109)
T ss_dssp TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------H
T ss_pred hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-----------CCEEEEEECCCC-----------------------H
Confidence 458999999999999999999999999988875 468888888755 6
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+++.|+|.++||+++++ +|+++.+
T Consensus 68 ~l~~~~~v~~~Pt~~~~~-~G~~~~~ 92 (109)
T 3f3q_A 68 DVAQKNEVSAMPTLLLFK-NGKEVAK 92 (109)
T ss_dssp HHHHHTTCCSSSEEEEEE-TTEEEEE
T ss_pred HHHHHcCCCccCEEEEEE-CCEEEEE
Confidence 789999999999999996 9998876
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-14 Score=129.53 Aligned_cols=124 Identities=15% Similarity=0.146 Sum_probs=96.0
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
+.||++||+|+ +..+ +.+.+|++++|++++||+|||+|| +.|||.|..++..|++.+++|++.| ++|++||.|
T Consensus 26 ~~vG~~APdF~---~~a~-l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g--~~vigiS~D 99 (219)
T 3tue_A 26 AKINSPAPSFE---EVAL-MPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELN--CEVLACSID 99 (219)
T ss_dssp CCTTSBCCCCE---EEEE-CTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTT--EEEEEEESS
T ss_pred cccCCcCCCCc---cccc-ccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCC--cEEEEeeCC
Confidence 46899999998 1111 347889999999999999999999 9999999999999999999999976 999999999
Q ss_pred CCHHHHHHhHhcC----CcccccC---CChHHHHHHhhhcCcC------ccceEEEecCCCCCCCccccc
Q 013684 116 EDLNAFNNYRACM----PWLAVPY---SDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 116 ~~~~~~~~~~~~~----~~~~~~~---~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
. .....++..+. ....++| .|.+ .++++.||+- ....+||||+ +|+|....
T Consensus 100 s-~~sh~~w~~~~~~~~~~~~l~fpllsD~~--~~va~~yGv~~~~~g~~~R~tFiIDp---~g~Ir~~~ 163 (219)
T 3tue_A 100 S-EYAHLQWTLQDRKKGGLGTMAIPILADKT--KNIARSYGVLEESQGVAYRGLFIIDP---HGMLRQIT 163 (219)
T ss_dssp C-HHHHHHHHHSCGGGTCCCSCSSCEEECTT--SHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred c-hhhHHHHhhhhHHhcCccccccccccCcc--cHHHHHcCCcccCCCeeEEEEEEECC---CCeEEEEE
Confidence 4 34444444321 2222222 2444 7899999983 3468999999 99887653
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-14 Score=124.10 Aligned_cols=118 Identities=14% Similarity=0.254 Sum_probs=99.7
Q ss_pred hhhcCCCCCcc-CCCC-Cceeeccc-cCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEE-EEEEe
Q 013684 211 LLTNHDRGYLL-GHPP-DEKVPVSS-LVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFE-VVFVS 285 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g-~~~~~l~~-~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~-vv~is 285 (438)
.+|..+|+|++ +.++ + .+++++ ++||+++|+|| ..|||.|..+++.+.+.+++|++. +++ |++||
T Consensus 15 ~vGd~aPdf~l~~~g~~~-~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~---------gv~~VigIS 84 (171)
T 2xhf_A 15 KVGDIIPDVLVYEDVPSK-SFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEE---------GYHTIACIA 84 (171)
T ss_dssp CTTCBCCCCEEECSSTTC-EEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHT---------TCCEEEEEE
T ss_pred cCcCCCCCeEEecCCCCc-EEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC---------CCCEEEEEe
Confidence 47899999999 5442 7 999999 59999999998 579999999999999999999976 785 99999
Q ss_pred cCCCHHHHHHHHhcCCC-cccccCCchhHHHHHhcCcC-----------ceeeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFGTMPW-LALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~~~-~~~p~~~d~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~~ 340 (438)
+| +....++|.++.+. ..||++.|.+.++++.||+. ....+|||| +|+|++..
T Consensus 85 ~D-~~~~~~~w~~~~~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~ 149 (171)
T 2xhf_A 85 VN-DPFVMAAWGKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVS 149 (171)
T ss_dssp SS-CHHHHHHHHHHHCTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred CC-CHHHHHHHHHhcCCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEE
Confidence 99 66777777776662 27999999999999999983 245789998 99999875
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=115.89 Aligned_cols=71 Identities=28% Similarity=0.513 Sum_probs=63.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+|+++|+||++||++|+.+.|.|.++++++++ ++.++.|++|.+ .+
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~----------~v~~~~vd~~~~-----------------------~~ 83 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDG----------QIVIYKVDTEKE-----------------------QE 83 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC-----------------------HH
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC----------CEEEEEEeCCCC-----------------------HH
Confidence 468999999999999999999999999988864 388999988765 57
Q ss_pred HHHhcCcCceeeEEEECCCCcEEE
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
+++.|+|.++||++++|++|+++.
T Consensus 84 l~~~~~v~~~Pt~~~~~~~G~~~~ 107 (136)
T 2l5l_A 84 LAGAFGIRSIPSILFIPMEGKPEM 107 (136)
T ss_dssp HHHHTTCCSSCEEEEECSSSCCEE
T ss_pred HHHHcCCCCCCEEEEECCCCcEEE
Confidence 889999999999999999999874
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.9e-14 Score=115.74 Aligned_cols=72 Identities=24% Similarity=0.406 Sum_probs=63.1
Q ss_pred ccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 233 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 233 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
+.++|+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|..
T Consensus 28 ~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----------~v~~~~vd~d~~----------------------- 73 (116)
T 3qfa_C 28 AAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS-----------NVIFLEVDVDDC----------------------- 73 (116)
T ss_dssp HHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCT-----------TSEEEEEETTTT-----------------------
T ss_pred hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCC-----------------------
Confidence 3478999999999999999999999999887764 478888888754
Q ss_pred HHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 313 KELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 313 ~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.++++.|+|.++||++++ ++|+++.+
T Consensus 74 ~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 99 (116)
T 3qfa_C 74 QDVASECEVKSMPTFQFF-KKGQKVGE 99 (116)
T ss_dssp HHHHHHTTCCSSSEEEEE-SSSSEEEE
T ss_pred HHHHHHcCCccccEEEEE-eCCeEEEE
Confidence 678999999999999999 89998876
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-14 Score=119.05 Aligned_cols=93 Identities=22% Similarity=0.443 Sum_probs=74.9
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
.+||+++|+||++||++|+.+.|.+.+++++++ ++.++.|++|.. .
T Consensus 44 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-----------~v~~~~v~~~~~-----------------------~ 89 (139)
T 3d22_A 44 RDGKIVLANFSARWCGPSRQIAPYYIELSENYP-----------SLMFLVIDVDEL-----------------------S 89 (139)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTS-----------------------H
T ss_pred hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----------CCEEEEEeCccc-----------------------H
Confidence 468999999999999999999999999988774 478999998754 6
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccCCC
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPR 376 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~~~ 376 (438)
++++.|+|.++||++++ ++|+++.+. .|. +. ++|.+.|++++...|.
T Consensus 90 ~~~~~~~v~~~Pt~~~~-~~G~~~~~~-------~G~-----~~---~~l~~~l~~~~~~~~~ 136 (139)
T 3d22_A 90 DFSASWEIKATPTFFFL-RDGQQVDKL-------VGA-----NK---PELHKKITAILDSLPP 136 (139)
T ss_dssp HHHHHTTCCEESEEEEE-ETTEEEEEE-------ESC-----CH---HHHHHHHHHHHHTSCT
T ss_pred HHHHHcCCCcccEEEEE-cCCeEEEEE-------eCC-----CH---HHHHHHHHHHhccCCC
Confidence 78999999999999999 999998763 332 22 5566667776665544
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=111.41 Aligned_cols=71 Identities=25% Similarity=0.484 Sum_probs=64.2
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.|++++|+||++||++|+.+.|.+.++++++++ ++.++.|++|.+ .+
T Consensus 16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~----------~v~~~~vd~~~~-----------------------~~ 62 (112)
T 2voc_A 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD----------KLKIVKIDVDEN-----------------------QE 62 (112)
T ss_dssp SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT----------TCEEEEEETTTC-----------------------CS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC----------CcEEEEEECCCC-----------------------HH
Confidence 789999999999999999999999999998864 488999998865 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|+++++ ++|+++.+
T Consensus 63 l~~~~~v~~~Pt~~~~-~~G~~~~~ 86 (112)
T 2voc_A 63 TAGKYGVMSIPTLLVL-KDGEVVET 86 (112)
T ss_dssp HHHHTTCCSBSEEEEE-ETTEEEEE
T ss_pred HHHHcCCCcccEEEEE-eCCEEEEE
Confidence 8899999999999999 99999876
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.47 E-value=4e-14 Score=124.61 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=67.2
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHH--HHhcCCC
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES--YFGTMPW 302 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~--~~~~~~~ 302 (438)
.+..+..+||+|+|+|||+||++|+.+.+.+ .++.+.++++ +.++.|++|...+.... +.....+
T Consensus 39 ~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~----------~~~v~v~~d~~~~~~~~~~~~~~~~~ 108 (172)
T 3f9u_A 39 GMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINND----------YVLITLYVDNKTPLTEPVKIMENGTE 108 (172)
T ss_dssp HHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHH----------CEEEEEETTCCCEEEEEEEEEETTEE
T ss_pred HHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCC----------EEEEEEecCcccccchhhhhhhcchh
Confidence 4555567899999999999999999975444 5555555543 88999998865310000 0000011
Q ss_pred cccccCCchhHHH-HHhcCcCceeeEEEECCCCcEEEcc
Q 013684 303 LALPFGDPTIKEL-TKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 303 ~~~p~~~d~~~~l-~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
..+....+....+ .+.|+|.++||++|+|++|+++.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~ 147 (172)
T 3f9u_A 109 RTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKS 147 (172)
T ss_dssp EEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCC
T ss_pred hhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeec
Confidence 1111222222333 6899999999999999999998773
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=134.18 Aligned_cols=197 Identities=16% Similarity=0.267 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC----ccceEEEecCCCC
Q 013684 89 FTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE----GIPCLVVLQPYDD 164 (438)
Q Consensus 89 ~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~----~~P~~~lvd~~~~ 164 (438)
....+.++++++++++.++.++.++.+.- ..+.+.||+. ..|.+++++.
T Consensus 255 ~~~~~~~vA~~~~~k~~~i~F~~~D~~~~------------------------~~~l~~~gl~~~~~~~P~~~i~~~--- 307 (481)
T 3f8u_A 255 WRNRVMMVAKKFLDAGHKLNFAVASRKTF------------------------SHELSDFGLESTAGEIPVVAIRTA--- 307 (481)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEETTTT------------------------HHHHGGGTCCCCTTCSCEEEEECS---
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEcHHHH------------------------HHHHHHcCCCcccCCCcEEEEEcC---
Confidence 35667888888887654466665543321 4556778886 6899999886
Q ss_pred CCCcccccchhHHhhhCCCCccCChh--HHHHHHHHHHhhhhHHHHHhhhhcCCCC---Ccc-CCCCCceeecccc-CCC
Q 013684 165 KDDATLHDGVELIYKYGIRAFPFTKE--KLEELQKEEKEKHERQTLINLLTNHDRG---YLL-GHPPDEKVPVSSL-VGK 237 (438)
Q Consensus 165 ~G~v~~~~~~~~i~~~~~~a~p~~~e--~l~~L~~~~~~~~~~~~~~~~~g~~~~~---f~l-~~~g~~~~~l~~~-~gk 237 (438)
++...... . .++.+ .+..+............+ ...+.|. -.+ ..+|+ .+..... .||
T Consensus 308 ~~~ky~~~----------~--~~t~e~~~l~~f~~~~~~g~~~~~~---~s~~~p~~~~~~v~~~~~~-~~~~~~~~~~k 371 (481)
T 3f8u_A 308 KGEKFVMQ----------E--EFSRDGKALERFLQDYFDGNLKRYL---KSEPIPESNDGPVKVVVAE-NFDEIVNNENK 371 (481)
T ss_dssp SSCEEECC----------S--CCCTTSHHHHHHHHHHHHTCCCCCC---CCCCCCSCCCSSSEEECTT-THHHHHTCTTC
T ss_pred CCcccCCC----------c--ccCccHHHHHHHHHHHhcCCccccc---ccCCCCCCCCCCeEEeccc-CHHHHhhcCCC
Confidence 55332111 0 12333 555544433322111111 1112221 122 44555 4432222 489
Q ss_pred EEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 013684 238 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 317 (438)
Q Consensus 238 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 317 (438)
+|+|+|||+||++|+.+.|.+.++++.+++. .++.++.|+++.+ ++.+
T Consensus 372 ~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~--------~~v~~~~id~~~~------------------------~~~~ 419 (481)
T 3f8u_A 372 DVLIEFYAPWCGHCKNLEPKYKELGEKLSKD--------PNIVIAKMDATAN------------------------DVPS 419 (481)
T ss_dssp EEEEEEECTTBHHHHHHHHHHHHHHHHTTTC--------SSEEEEEEETTSS------------------------CCCT
T ss_pred cEEEEEecCcChhHHHhhHHHHHHHHHhccC--------CCEEEEEEECCch------------------------hhHh
Confidence 9999999999999999999999999998753 3577777776542 3457
Q ss_pred hcCcCceeeEEEECCCCc--EEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccCC
Q 013684 318 YFDVQGIPCLVIIGPEGK--TVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLP 375 (438)
Q Consensus 318 ~~~v~~~P~~~lid~~G~--i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~~ 375 (438)
.|+|.++||+++++++|+ ++... |. ...+.|.+.|++.+...+
T Consensus 420 ~~~v~~~Pt~~~~~~~~~~~~~~~~--------G~-------~~~~~l~~~l~~~~~~~~ 464 (481)
T 3f8u_A 420 PYEVRGFPTIYFSPANKKLNPKKYE--------GG-------RELSDFISYLQREATNPP 464 (481)
T ss_dssp TCCCCSSSEEEEECTTCTTSCEECC--------SC-------CSHHHHHHHHHHHCSSCC
T ss_pred hCCCcccCEEEEEeCCCeEeeeEeC--------CC-------CCHHHHHHHHHHhcCCcc
Confidence 899999999999988876 33322 21 124667777777655443
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=117.19 Aligned_cols=84 Identities=21% Similarity=0.357 Sum_probs=75.0
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccC
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY 135 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~ 135 (438)
+.+.+|..+.++.++||+++|+||++||++|+.+.|.|.++++++++ ++.++.|++|..
T Consensus 36 l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~~------------------ 94 (141)
T 3hxs_A 36 IADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG---KIYIYKVNVDKE------------------ 94 (141)
T ss_dssp TCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT---TCEEEEEETTTC------------------
T ss_pred hhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC---ceEEEEEECCCC------------------
Confidence 45888999999999999999999999999999999999999999864 388888887754
Q ss_pred CChHHHHHHhhhcCcCccceEEEecCCCCCCCcc
Q 013684 136 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 136 ~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
..+++.|+|.++|+++++++ +|+++
T Consensus 95 ------~~~~~~~~v~~~Pt~~~~~~---~g~~~ 119 (141)
T 3hxs_A 95 ------PELARDFGIQSIPTIWFVPM---KGEPQ 119 (141)
T ss_dssp ------HHHHHHTTCCSSSEEEEECS---SSCCE
T ss_pred ------HHHHHHcCCCCcCEEEEEeC---CCCEE
Confidence 67889999999999999998 88876
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=115.21 Aligned_cols=81 Identities=19% Similarity=0.378 Sum_probs=65.6
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcc
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA 304 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~ 304 (438)
.+.++..+||+++|+||++||++|+.+.|.+ ..+.+.+... +.++.|+++.+.
T Consensus 19 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~----------~~~~~vd~~~~~-------------- 74 (130)
T 2kuc_A 19 ALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH----------FVNLKMDMEKGE-------------- 74 (130)
T ss_dssp HHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH----------SEEEEECSSSTT--------------
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC----------eEEEEEecCCcc--------------
Confidence 4555556799999999999999999999998 6666666544 667777666421
Q ss_pred cccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 305 LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 305 ~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
...+++.|+|.++|+++++|++|+++.+
T Consensus 75 -------~~~~~~~~~v~~~Pt~~~~d~~G~~~~~ 102 (130)
T 2kuc_A 75 -------GVELRKKYGVHAYPTLLFINSSGEVVYR 102 (130)
T ss_dssp -------HHHHHHHTTCCSSCEEEEECTTSCEEEE
T ss_pred -------hHHHHHHcCCCCCCEEEEECCCCcEEEE
Confidence 4788999999999999999999999876
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-13 Score=108.96 Aligned_cols=71 Identities=23% Similarity=0.508 Sum_probs=63.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++++++++ ++.++.|+++.+ .+
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 65 (108)
T 2trx_A 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG----------KLTVAKLNIDQN-----------------------PG 65 (108)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TEEEEEEETTTC-----------------------TT
T ss_pred cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC----------CcEEEEEECCCC-----------------------HH
Confidence 578999999999999999999999999988864 488999988755 46
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|++.++|+++++ ++|+++.+
T Consensus 66 ~~~~~~v~~~Pt~~~~-~~G~~~~~ 89 (108)
T 2trx_A 66 TAPKYGIRGIPTLLLF-KNGEVAAT 89 (108)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHHcCCcccCEEEEE-eCCEEEEE
Confidence 8899999999999999 89999876
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=111.06 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=68.6
Q ss_pred CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCC
Q 013684 222 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP 301 (438)
Q Consensus 222 ~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 301 (438)
..+++ .+...-.++++++|+||++||++|+.+.|.+.+++++++++ +.++.|++|..
T Consensus 8 ~l~~~-~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~------------ 64 (109)
T 3tco_A 8 VLTEE-NFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK----------AVFGRLNVDEN------------ 64 (109)
T ss_dssp ECCTT-THHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------SEEEEEETTTC------------
T ss_pred EecHH-HHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC----------ceEEEEccccC------------
Confidence 33444 44433335899999999999999999999999999988753 78888888765
Q ss_pred CcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 302 WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 302 ~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..+++.|+|.++|+++++ ++|+++.+
T Consensus 65 -----------~~~~~~~~i~~~Pt~~~~-~~g~~~~~ 90 (109)
T 3tco_A 65 -----------QKIADKYSVLNIPTTLIF-VNGQLVDS 90 (109)
T ss_dssp -----------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred -----------HHHHHhcCcccCCEEEEE-cCCcEEEe
Confidence 678999999999999999 99999876
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=115.86 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=63.6
Q ss_pred CEEEEEEecCCC--hhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 237 KTVGLYFSARWC--IPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 237 k~vll~F~a~wC--~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++|||+|||+|| ++|+.+.|.|.++.++|.++ +.|+.|++|.+ .+
T Consensus 34 ~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~----------v~~~KVdvDe~-----------------------~~ 80 (137)
T 2qsi_A 34 KIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR----------LVAAEVAAEAE-----------------------RG 80 (137)
T ss_dssp SEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT----------EEEEEECGGGH-----------------------HH
T ss_pred CcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC----------cEEEEEECCCC-----------------------HH
Confidence 499999999999 99999999999999999754 88888888754 78
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
++.+|||+++||+++| ++|+++.+.
T Consensus 81 la~~ygV~siPTlilF-kdG~~v~~~ 105 (137)
T 2qsi_A 81 LMARFGVAVCPSLAVV-QPERTLGVI 105 (137)
T ss_dssp HHHHHTCCSSSEEEEE-ECCEEEEEE
T ss_pred HHHHcCCccCCEEEEE-ECCEEEEEE
Confidence 9999999999999999 999999883
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=110.50 Aligned_cols=70 Identities=16% Similarity=0.281 Sum_probs=54.7
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++++++. ++.++.|++|.+ .+
T Consensus 17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-----------~~~~~~vd~~~~-----------------------~~ 62 (105)
T 4euy_A 17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-----------YVEKIEILLQDM-----------------------QE 62 (105)
T ss_dssp CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-----------TEEEEEEEECCC-------------------------
T ss_pred cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-----------CceEEEEECCCC-----------------------HH
Confidence 57999999999999999999999999988773 588999998865 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++||++++ ++|+++.+
T Consensus 63 l~~~~~v~~~Pt~~~~-~~G~~~~~ 86 (105)
T 4euy_A 63 IAGRYAVFTGPTVLLF-YNGKEILR 86 (105)
T ss_dssp -------CCCCEEEEE-ETTEEEEE
T ss_pred HHHhcCCCCCCEEEEE-eCCeEEEE
Confidence 8899999999999999 69998876
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=110.79 Aligned_cols=73 Identities=22% Similarity=0.350 Sum_probs=61.4
Q ss_pred ccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 233 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 233 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
+.+|++++|+||++||++|+.+.|.+.+++++++ ++.++.|+++.. .
T Consensus 21 ~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~-----------~v~~~~vd~~~~----------------------~ 67 (111)
T 2pu9_C 21 AAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL-----------DVIFLKLDCNQE----------------------N 67 (111)
T ss_dssp TCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSST----------------------T
T ss_pred hcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC-----------CeEEEEEecCcc----------------------h
Confidence 3468999999999999999999999999988765 478888888732 2
Q ss_pred HHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 313 KELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 313 ~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..+++.|+|.++||+++ +++|+++.+
T Consensus 68 ~~~~~~~~v~~~Pt~~~-~~~G~~~~~ 93 (111)
T 2pu9_C 68 KTLAKELGIRVVPTFKI-LKENSVVGE 93 (111)
T ss_dssp HHHHHHHCCSBSSEEEE-ESSSSEEEE
T ss_pred HHHHHHcCCCeeeEEEE-EeCCcEEEE
Confidence 67899999999999555 499999876
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-13 Score=111.91 Aligned_cols=72 Identities=21% Similarity=0.556 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.|++++|+||++||++|+.+.|.+.+++++++.. ++.++.|+++.+ .+
T Consensus 20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~---------~~~~~~vd~~~~-----------------------~~ 67 (112)
T 3d6i_A 20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNS---------NVSFLSIDADEN-----------------------SE 67 (112)
T ss_dssp TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGT---------TSEEEEEETTTC-----------------------HH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCC---------CEEEEEEecccC-----------------------HH
Confidence 4789999999999999999999999999887533 588999988765 57
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++||++++ ++|+++.+
T Consensus 68 ~~~~~~v~~~Pt~~~~-~~G~~~~~ 91 (112)
T 3d6i_A 68 ISELFEISAVPYFIII-HKGTILKE 91 (112)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHHcCCCcccEEEEE-ECCEEEEE
Confidence 8899999999999999 79999876
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=115.72 Aligned_cols=84 Identities=18% Similarity=0.383 Sum_probs=72.4
Q ss_pred CCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCC
Q 013684 58 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD 137 (438)
Q Consensus 58 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d 137 (438)
..+++.+.....+||+++|+||++||++|+.+.|.|.++++++++ ++.++.|++|..
T Consensus 29 ~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~---~v~~~~vd~d~~-------------------- 85 (128)
T 3ul3_B 29 QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK---RIYLLKVDLDKN-------------------- 85 (128)
T ss_dssp CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GEEEEEEEGGGC--------------------
T ss_pred cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CeEEEEEECCCC--------------------
Confidence 667777778888999999999999999999999999999999974 388888887754
Q ss_pred hHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 138 LETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 138 ~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..+++.|+|.++|+++++ + +|+++.+.
T Consensus 86 ----~~l~~~~~v~~~Pt~~~~-~---~G~~~~~~ 112 (128)
T 3ul3_B 86 ----ESLARKFSVKSLPTIILL-K---NKTMLARK 112 (128)
T ss_dssp ----HHHHHHTTCCSSSEEEEE-E---TTEEEEEE
T ss_pred ----HHHHHHcCCCCcCEEEEE-E---CCEEEEEe
Confidence 578899999999999999 5 88877543
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-14 Score=119.25 Aligned_cols=95 Identities=8% Similarity=0.042 Sum_probs=72.2
Q ss_pred CCCEEEEEEecCC--ChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 235 VGKTVGLYFSARW--CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 235 ~gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
.+++|||+|||+| |++|+.+.|.|.+++++|.++ .+.|+.|++|.+
T Consensus 33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~---------~v~~~KVdvDe~----------------------- 80 (140)
T 2qgv_A 33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDY---------TWQVAIADLEQS----------------------- 80 (140)
T ss_dssp TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTS---------CCEEEECCHHHH-----------------------
T ss_pred CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCC---------eEEEEEEECCCC-----------------------
Confidence 4567899999999 999999999999999998642 278888887743
Q ss_pred HHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccCCC
Q 013684 313 KELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPR 376 (438)
Q Consensus 313 ~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~~~ 376 (438)
.+++.+|||.++||+++| ++|+++.+ ..|... . ++|.+.|++.++..+.
T Consensus 81 ~~lA~~ygV~sIPTlilF-k~G~~v~~-------~~G~~~----k---~~l~~~i~~~l~~~~~ 129 (140)
T 2qgv_A 81 EAIGDRFGAFRFPATLVF-TGGNYRGV-------LNGIHP----W---AELINLMRGLVEPQQE 129 (140)
T ss_dssp HHHHHHHTCCSSSEEEEE-ETTEEEEE-------EESCCC----H---HHHHHHHHHHHC----
T ss_pred HHHHHHcCCccCCEEEEE-ECCEEEEE-------EecCCC----H---HHHHHHHHHHhcCCCC
Confidence 789999999999999999 99999988 344322 2 3455566666644443
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-13 Score=109.41 Aligned_cols=71 Identities=27% Similarity=0.483 Sum_probs=62.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.||+++|+||++||++|+.+.|.+.++++++++ ++.++.|++|.+ .+
T Consensus 22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 68 (112)
T 1t00_A 22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD----------KIEIVKLNIDEN-----------------------PG 68 (112)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC-----------------------HH
T ss_pred CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC----------CeEEEEEEcCCC-----------------------HH
Confidence 478999999999999999999999999988864 388999998865 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++||++++ ++|+++.+
T Consensus 69 ~~~~~~v~~~Pt~~~~-~~G~~~~~ 92 (112)
T 1t00_A 69 TAAKYGVMSIPTLNVY-QGGEVAKT 92 (112)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHhCCCCcccEEEEE-eCCEEEEE
Confidence 8899999999999888 89999876
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=113.49 Aligned_cols=83 Identities=19% Similarity=0.377 Sum_probs=67.8
Q ss_pred CCCCCceeecc-ccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC
Q 013684 222 GHPPDEKVPVS-SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 300 (438)
Q Consensus 222 ~~~g~~~~~l~-~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 300 (438)
..+++ .+... .-.+++++|+||++||++|+.+.|.+.++++++++ ++.++.|++|.+
T Consensus 26 ~l~~~-~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----------~v~~~~vd~~~~----------- 83 (128)
T 2o8v_B 26 HLTDD-SFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG----------KLTVAKLNIDQN----------- 83 (128)
T ss_dssp EECTT-THHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT----------TEEEEEEETTTC-----------
T ss_pred ecChh-hHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC----------CeEEEEEECCCC-----------
Confidence 44444 44322 23579999999999999999999999999988864 488999998765
Q ss_pred CCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 301 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 301 ~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.++++.|+|.++||++++ ++|+++.+
T Consensus 84 ------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 109 (128)
T 2o8v_B 84 ------------PGTAPKYGIRGIPTLLLF-KNGEVAAT 109 (128)
T ss_dssp ------------CTTSGGGTCCSSSEEEEE-ETTEEEEE
T ss_pred ------------HHHHHHcCCCccCEEEEE-eCCEEEEE
Confidence 457889999999999999 99999876
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-13 Score=112.14 Aligned_cols=71 Identities=27% Similarity=0.503 Sum_probs=62.5
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
.+|++++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.. .
T Consensus 36 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-----------~v~~~~vd~d~~-----------------------~ 81 (124)
T 1xfl_A 36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-----------NVLFLKVDTDEL-----------------------K 81 (124)
T ss_dssp HTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-----------SEEEEEEETTTS-----------------------H
T ss_pred hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----------CcEEEEEECccC-----------------------H
Confidence 368999999999999999999999999888764 488898888754 6
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++++.|+|.++||++++ ++|+++.+
T Consensus 82 ~l~~~~~v~~~Pt~~~~-~~G~~~~~ 106 (124)
T 1xfl_A 82 SVASDWAIQAMPTFMFL-KEGKILDK 106 (124)
T ss_dssp HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHHHcCCCccCEEEEE-ECCEEEEE
Confidence 78999999999998888 89999876
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=118.00 Aligned_cols=69 Identities=22% Similarity=0.297 Sum_probs=61.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++|+|+|||+||++|+.+.|.|.+++++++++ +.++.|++|.. .+
T Consensus 22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~----------~~~~~vd~d~~-----------------------~~ 68 (149)
T 3gix_A 22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM----------AAIYLVDVDQT-----------------------AV 68 (149)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT----------EEEEEEETTTC-----------------------CH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc----------eEEEEEECCcC-----------------------HH
Confidence 4799999999999999999999999999888643 88999988755 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEE
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
+++.|+|.++||++++ ++|+++
T Consensus 69 l~~~~~v~~~Pt~~~~-~~G~~v 90 (149)
T 3gix_A 69 YTQYFDISYIPSTVFF-FNGQHM 90 (149)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEE
T ss_pred HHHHcCCCccCeEEEE-ECCeEE
Confidence 8999999999999955 899988
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-13 Score=108.17 Aligned_cols=71 Identities=21% Similarity=0.402 Sum_probs=63.8
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.+ .+
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~-----------------------~~ 64 (106)
T 3die_A 18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK----------ADILKLDVDEN-----------------------PS 64 (106)
T ss_dssp CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT----------CEEEEEETTTC-----------------------HH
T ss_pred cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC----------cEEEEEECCcC-----------------------HH
Confidence 7899999999999999999999999999988753 88999998865 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|++.++|+++++ ++|+++.+
T Consensus 65 ~~~~~~v~~~Pt~~~~-~~G~~~~~ 88 (106)
T 3die_A 65 TAAKYEVMSIPTLIVF-KDGQPVDK 88 (106)
T ss_dssp HHHHTTCCSBSEEEEE-ETTEEEEE
T ss_pred HHHhCCCcccCEEEEE-eCCeEEEE
Confidence 8899999999999999 59998876
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-13 Score=107.77 Aligned_cols=71 Identities=24% Similarity=0.481 Sum_probs=62.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.|++++|+||++||++|+.+.|.+.++++++++ ++.++.|++|.+ .+
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 64 (107)
T 1dby_A 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD----------KLKCVKLNTDES-----------------------PN 64 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC-----------------------HH
T ss_pred CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCC----------ceEEEEEECCCC-----------------------HH
Confidence 478999999999999999999999999988864 388999988765 57
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|+++++ ++|+++.+
T Consensus 65 ~~~~~~v~~~Pt~~~~-~~G~~~~~ 88 (107)
T 1dby_A 65 VASEYGIRSIPTIMVF-KGGKKCET 88 (107)
T ss_dssp HHHHHTCCSSCEEEEE-SSSSEEEE
T ss_pred HHHHCCCCcCCEEEEE-eCCEEEEE
Confidence 8899999999999888 79999876
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=109.20 Aligned_cols=71 Identities=27% Similarity=0.485 Sum_probs=63.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.|++++|+||++||++|+.+.|.+.++++++++ ++.++.|++|.+ .+
T Consensus 16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~----------~v~~~~v~~~~~-----------------------~~ 62 (105)
T 1nsw_A 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD----------KVTVAKLNVDEN-----------------------PE 62 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT----------TCEEEEEETTTC-----------------------HH
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CcEEEEEECcCC-----------------------HH
Confidence 578999999999999999999999999988764 388999998765 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|+++++ ++|+++.+
T Consensus 63 ~~~~~~v~~~Pt~~~~-~~G~~~~~ 86 (105)
T 1nsw_A 63 TTSQFGIMSIPTLILF-KGGRPVKQ 86 (105)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHHcCCccccEEEEE-eCCeEEEE
Confidence 8899999999999999 89998876
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=115.12 Aligned_cols=88 Identities=22% Similarity=0.241 Sum_probs=72.1
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccC
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY 135 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~ 135 (438)
..+.+|........+||+++|+||++||++|+.+.|.|.+++++++ . ++.++.|++|.+..
T Consensus 11 ~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~-~--~v~~~~v~~~~d~~---------------- 71 (126)
T 2l57_A 11 FQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE-G--KFNIYYARLEEEKN---------------- 71 (126)
T ss_dssp TTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS-S--SCEEEEEETTSSHH----------------
T ss_pred ccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc-C--CeEEEEEeCCCCch----------------
Confidence 5556655544666689999999999999999999999999999986 2 48899998542222
Q ss_pred CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 136 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 136 ~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
..+++.|+|.++|+++++++ +|+++.+
T Consensus 72 ------~~~~~~~~v~~~Pt~~~~~~---~G~~~~~ 98 (126)
T 2l57_A 72 ------IDLAYKYDANIVPTTVFLDK---EGNKFYV 98 (126)
T ss_dssp ------HHHHHHTTCCSSSEEEEECT---TCCEEEE
T ss_pred ------HHHHHHcCCcceeEEEEECC---CCCEEEE
Confidence 68899999999999999999 9998765
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-13 Score=121.41 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=63.5
Q ss_pred eccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC
Q 013684 230 PVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 309 (438)
Q Consensus 230 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~ 309 (438)
.+++++|++++|+|||+|||+|+.+.|.|.+++++++ ++.++.|+.|.+
T Consensus 48 ~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-----------~v~~~~v~~d~~-------------------- 96 (167)
T 1z6n_A 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-----------NIELAIISKGRA-------------------- 96 (167)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-----------TEEEEEECHHHH--------------------
T ss_pred HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-----------CcEEEEEECCCC--------------------
Confidence 3566789999999999999999999999999987653 578888877643
Q ss_pred chhHHHHHhcC---cCceeeEEEECCCCcEEEcc
Q 013684 310 PTIKELTKYFD---VQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 310 d~~~~l~~~~~---v~~~P~~~lid~~G~i~~~~ 340 (438)
.++.+.|+ +.++||++++|++|+++.+.
T Consensus 97 ---~~~~~~~~~~~v~~iPt~i~~~~~G~~~~~~ 127 (167)
T 1z6n_A 97 ---EDDLRQRLALERIAIPLVLVLDEEFNLLGRF 127 (167)
T ss_dssp ---HHHTTTTTTCSSCCSSEEEEECTTCCEEEEE
T ss_pred ---HHHHHHHHHcCCCCcCeEEEECCCCCEEEEE
Confidence 34555565 99999999999999998764
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-13 Score=108.39 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=62.0
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|+||++||++|+.+.|.+.+++++++ ++.++.|++|.+ .+
T Consensus 20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~-----------~~~~~~vd~~~~-----------------------~~ 65 (107)
T 1gh2_A 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-----------QAVFLEVDVHQC-----------------------QG 65 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTS-----------------------HH
T ss_pred CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC-----------CcEEEEEECccC-----------------------HH
Confidence 57899999999999999999999999988873 478999988755 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++||++++ ++|+++.+
T Consensus 66 ~~~~~~v~~~Pt~~~~-~~G~~~~~ 89 (107)
T 1gh2_A 66 TAATNNISATPTFQFF-RNKVRIDQ 89 (107)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHhcCCCcccEEEEE-ECCeEEEE
Confidence 8899999999999999 89998876
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=110.59 Aligned_cols=74 Identities=18% Similarity=0.339 Sum_probs=61.6
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
.+..+|+|+|+|||+||++|+.+.|.+.++++.++ ++.++.|++|.. .++++
T Consensus 16 ~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~d~~------------------------~~l~~ 67 (105)
T 3zzx_A 16 NEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS----DVVFLKVDVDEC------------------------EDIAQ 67 (105)
T ss_dssp HHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TEEEEEEETTTC------------------------HHHHH
T ss_pred HhcCCCEEEEEEECCCCCCccCCCcchhhhhhccC----CeEEEEEecccC------------------------HHHHH
Confidence 34457999999999999999999999999988763 477777776644 67899
Q ss_pred hcCcCccceEEEecCCCCCCCccccc
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.|+|.++||++++. +|+.+.+.
T Consensus 68 ~~~V~~~PT~~~~~----~G~~v~~~ 89 (105)
T 3zzx_A 68 DNQIACMPTFLFMK----NGQKLDSL 89 (105)
T ss_dssp HTTCCBSSEEEEEE----TTEEEEEE
T ss_pred HcCCCeecEEEEEE----CCEEEEEE
Confidence 99999999998885 89887654
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-13 Score=120.72 Aligned_cols=116 Identities=14% Similarity=0.223 Sum_probs=98.1
Q ss_pred hhcCCCCCcc-C--C---------CC----Cceeeccc-cCCCEEEEEEe-cCCChhhh-hhhHHHHHHHHHH-Hhhhhh
Q 013684 212 LTNHDRGYLL-G--H---------PP----DEKVPVSS-LVGKTVGLYFS-ARWCIPCE-KFMPKLLSIYQKI-KQNLVE 271 (438)
Q Consensus 212 ~g~~~~~f~l-~--~---------~g----~~~~~l~~-~~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~-~~~~~~ 271 (438)
+|..+|+|++ + . +| + .+++++ ++||+++|+|| +.|||.|. .+++.+++.+++| +..
T Consensus 3 vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~-~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~--- 78 (182)
T 1xiy_A 3 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFT-SIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKEN--- 78 (182)
T ss_dssp TTCBCCCCEEEEEHHHHTC--------CCEE-EEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTS---
T ss_pred CCCCCCCeEEEcccccccccccccCCCccce-eEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhC---
Confidence 5889999999 6 3 67 7 899998 69999999888 67999999 8999999999999 765
Q ss_pred cCCCCCCEE-EEEEecCCCHHHHHHHHhcCCCc-ccccCCchhHHHHHhcCcC-----------ceeeEEEECCCCcEEE
Q 013684 272 KGDALEDFE-VVFVSTDRDQTSFESYFGTMPWL-ALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVT 338 (438)
Q Consensus 272 ~~~~~~~~~-vv~is~d~~~~~~~~~~~~~~~~-~~p~~~d~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~ 338 (438)
+++ |++||+| +....++|.++.+ + .||++.|.+.+++++||+. ..+.+|||| +|+|++
T Consensus 79 ------g~~~V~gvS~D-~~~~~~~~~~~~~-~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~ 149 (182)
T 1xiy_A 79 ------NFDDIYCITNN-DIYVLKSWFKSMD-IKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVK 149 (182)
T ss_dssp ------CCSEEEEEESS-CHHHHHHHHHHTT-CCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEE
T ss_pred ------CCcEEEEEeCC-CHHHHHHHHHHcC-CCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEE
Confidence 784 9999998 6677788888777 5 6999999999999999973 256789998 999998
Q ss_pred cc
Q 013684 339 KQ 340 (438)
Q Consensus 339 ~~ 340 (438)
..
T Consensus 150 ~~ 151 (182)
T 1xiy_A 150 MF 151 (182)
T ss_dssp EE
T ss_pred EE
Confidence 75
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-13 Score=132.44 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=90.3
Q ss_pred ccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHH
Q 013684 41 SLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN 119 (438)
Q Consensus 41 ~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~ 119 (438)
+.+|+|+ +.+.+|++++|++++||+|+|+|| +.|||.|..+++.|++ ... .+++|++||.| +.+
T Consensus 2 ak~p~F~--------l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~~--~~~~v~gis~D-~~~ 66 (322)
T 4eo3_A 2 ARVKHFE--------LLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR----ENF--EKAQVVGISRD-SVE 66 (322)
T ss_dssp CBCCCCE--------EEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH----SCC--TTEEEEEEESC-CHH
T ss_pred CCCCCcE--------EECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH----Hhh--CCCEEEEEeCC-CHH
Confidence 4688999 999999999999999999999999 6899999999888754 122 35999999998 567
Q ss_pred HHHHhHhcCCcccccCCChHHHHHHhhhcCc----CccceEEEecCCCCCCCcccc
Q 013684 120 AFNNYRACMPWLAVPYSDLETKKALNRKFDI----EGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 120 ~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v----~~~P~~~lvd~~~~~G~v~~~ 171 (438)
..++|.++++..+....|.+ ..+++.||| ..+|++||||+ +|+|++.
T Consensus 67 ~~~~f~~~~~l~fp~l~D~~--~~v~~~ygv~~~~~~~r~tfiId~---~G~i~~~ 117 (322)
T 4eo3_A 67 ALKRFKEKNDLKVTLLSDPE--GILHEFFNVLENGKTVRSTFLIDR---WGFVRKE 117 (322)
T ss_dssp HHHHHHHHHTCCSEEEECTT--CHHHHHTTCEETTEECCEEEEECT---TSBEEEE
T ss_pred HHHHHHHhhCCceEEEEcCc--hHHHHhcCCCCCCcCccEEEEECC---CCEEEEE
Confidence 77888887664433334554 789999999 45899999999 9999754
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=109.20 Aligned_cols=86 Identities=12% Similarity=0.111 Sum_probs=67.5
Q ss_pred CCCCCceeecccc-CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC
Q 013684 222 GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 300 (438)
Q Consensus 222 ~~~g~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 300 (438)
.+++. .+...-. .+++++|+|||+||++|+.+.|.+.++++++..+ ...+++.++.|+++..
T Consensus 19 ~l~~~-~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~-----~~~~~v~~~~vd~~~~----------- 81 (127)
T 3h79_A 19 ELTDE-TFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQK-----RNHLTFVAARIDGEKY----------- 81 (127)
T ss_dssp ECCTT-THHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTS-----TTTTTEEEEEEETTTC-----------
T ss_pred ECChh-hHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhc-----ccCCCeEEEEEEcccc-----------
Confidence 55555 4443222 4799999999999999999999999999988632 0124688888888755
Q ss_pred CCcccccCCchhHHHHHhcCcCceeeEEEECCCCcE
Q 013684 301 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 301 ~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i 336 (438)
.++++.|+|.++||++++++++++
T Consensus 82 ------------~~l~~~~~v~~~Pt~~~~~~g~~~ 105 (127)
T 3h79_A 82 ------------PDVIERMRVSGFPTMRYYTRIDKQ 105 (127)
T ss_dssp ------------HHHHHHTTCCSSSEEEEECSSCSS
T ss_pred ------------HhHHHhcCCccCCEEEEEeCCCCC
Confidence 678999999999999999766653
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-13 Score=112.35 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=64.6
Q ss_pred CCCCCceeecccc-CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC
Q 013684 222 GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 300 (438)
Q Consensus 222 ~~~g~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 300 (438)
.+++. .+..... .+++++|+||++||++|+.+.|.|.++++++++. .++.++.|+++..
T Consensus 11 ~l~~~-~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~--------~~~~~~~vd~~~~----------- 70 (133)
T 2dj3_A 11 VVVGK-TFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQ--------KDLVIAKMDATAN----------- 70 (133)
T ss_dssp ECCTT-TCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTS--------SSEEEEEECTTTS-----------
T ss_pred EEcCC-CHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCC--------CCEEEEEecCCcC-----------
Confidence 55566 5554333 4899999999999999999999999999998742 2577777776543
Q ss_pred CCcccccCCchhHHHHHhcCcCceeeEEEECCCCcE
Q 013684 301 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 301 ~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i 336 (438)
..+++.|+|.++||+++++++|++
T Consensus 71 ------------~~~~~~~~v~~~Pt~~~~~~g~~~ 94 (133)
T 2dj3_A 71 ------------DITNDQYKVEGFPTIYFAPSGDKK 94 (133)
T ss_dssp ------------CCCCSSCCCSSSSEEEEECTTCTT
T ss_pred ------------HHHHhhcCCCcCCEEEEEeCCCcc
Confidence 345678999999999999877653
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-13 Score=112.58 Aligned_cols=85 Identities=27% Similarity=0.397 Sum_probs=67.3
Q ss_pred CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCC
Q 013684 222 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP 301 (438)
Q Consensus 222 ~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 301 (438)
.+++. .+...-..+|+++|+||++||++|+.+.|.|.+++++++++ +.++.++.|+++.+
T Consensus 21 ~l~~~-~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~v~~~~vd~~~~------------ 80 (140)
T 2dj1_A 21 VLNDG-NFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDN-------DPPIAVAKIDATSA------------ 80 (140)
T ss_dssp ECCTT-THHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSS-------SSCCEEEEECTTTC------------
T ss_pred EcChH-hHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhcc-------CCceEEEEEeCccc------------
Confidence 44555 44433345899999999999999999999999999999864 23477777776644
Q ss_pred CcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEE
Q 013684 302 WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 302 ~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
..+++.|+|.++|+++++ ++|++..
T Consensus 81 -----------~~~~~~~~v~~~Pt~~~~-~~G~~~~ 105 (140)
T 2dj1_A 81 -----------SMLASKFDVSGYPTIKIL-KKGQAVD 105 (140)
T ss_dssp -----------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred -----------HHHHHHCCCCccCeEEEE-ECCcEEE
Confidence 678999999999999999 8898443
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.4e-13 Score=109.89 Aligned_cols=71 Identities=25% Similarity=0.512 Sum_probs=63.0
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.|++++|+||++||++|+.+.|.|.++++++.+ ++.++.|++|.+ .+
T Consensus 30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~----------~v~~~~vd~d~~-----------------------~~ 76 (119)
T 1w4v_A 30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG----------KVVMAKVDIDDH-----------------------TD 76 (119)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------SSEEEEEETTTT-----------------------HH
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CeEEEEEeCCCC-----------------------HH
Confidence 478999999999999999999999999988754 488999988754 57
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|+++++ ++|+++.+
T Consensus 77 l~~~~~v~~~Pt~~~~-~~G~~~~~ 100 (119)
T 1w4v_A 77 LAIEYEVSAVPTVLAM-KNGDVVDK 100 (119)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHHcCCCcccEEEEE-eCCcEEEE
Confidence 8899999999999999 89999876
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-13 Score=112.48 Aligned_cols=71 Identities=24% Similarity=0.431 Sum_probs=61.7
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++++++++. +.++.|++|.+ ..
T Consensus 34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~----------~~~~~vd~~~~-----------------------~~ 80 (130)
T 2dml_A 34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV----------VKVGAVNADKH-----------------------QS 80 (130)
T ss_dssp CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT----------SEEEEEETTTC-----------------------HH
T ss_pred CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc----------eEEEEEeCCCC-----------------------HH
Confidence 4789999999999999999999999999888643 78888888755 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEE
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
+++.|+|.++||+++++++|+++.
T Consensus 81 l~~~~~v~~~Pt~~~~~~~~~~~~ 104 (130)
T 2dml_A 81 LGGQYGVQGFPTIKIFGANKNKPE 104 (130)
T ss_dssp HHHHHTCCSSSEEEEESSCTTSCE
T ss_pred HHHHcCCCccCEEEEEeCCCCeEE
Confidence 899999999999999998887333
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.8e-13 Score=107.92 Aligned_cols=71 Identities=24% Similarity=0.502 Sum_probs=63.7
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++++.+++ ++.++.|++|.+ .+
T Consensus 24 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~v~~~~v~~~~~-----------------------~~ 70 (115)
T 1thx_A 24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSD----------RLKVVKLEIDPN-----------------------PT 70 (115)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT----------TCEEEEEESTTC-----------------------HH
T ss_pred CCceEEEEEECCCCHHHHHhHHHHHHHHHHhCC----------cEEEEEEEcCCC-----------------------HH
Confidence 578999999999999999999999999988864 388999998865 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|+++++ ++|+++.+
T Consensus 71 ~~~~~~v~~~Pt~~~~-~~G~~~~~ 94 (115)
T 1thx_A 71 TVKKYKVEGVPALRLV-KGEQILDS 94 (115)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHHcCCCceeEEEEE-cCCEEEEE
Confidence 8899999999999999 99999876
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-13 Score=115.25 Aligned_cols=74 Identities=19% Similarity=0.365 Sum_probs=58.9
Q ss_pred ccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 013684 231 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 310 (438)
Q Consensus 231 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 310 (438)
+++.+||+++|+||++||++|+.+.|.+.++++++ ++.++.|++|..
T Consensus 35 l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~------------~v~~~~vd~~~~--------------------- 81 (133)
T 3cxg_A 35 FSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY------------YVTLVDIDVDIH--------------------- 81 (133)
T ss_dssp HTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE------------ECEEEEEETTTC---------------------
T ss_pred HHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc------------CEEEEEEeccch---------------------
Confidence 45667899999999999999999999988776543 256777776643
Q ss_pred hhHHHHHhcCcCceeeEEEE-CCCCc--EEEc
Q 013684 311 TIKELTKYFDVQGIPCLVII-GPEGK--TVTK 339 (438)
Q Consensus 311 ~~~~l~~~~~v~~~P~~~li-d~~G~--i~~~ 339 (438)
.++++.|+|.++||++++ +++|+ ++.+
T Consensus 82 --~~l~~~~~v~~~Pt~~~~~~~~g~g~~~~~ 111 (133)
T 3cxg_A 82 --PKLNDQHNIKALPTFEFYFNLNNEWVLVHT 111 (133)
T ss_dssp --HHHHHHTTCCSSSEEEEEEEETTEEEEEEE
T ss_pred --HHHHHhcCCCCCCEEEEEEecCCCeEEEEE
Confidence 678899999999999999 44666 7766
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-13 Score=119.04 Aligned_cols=106 Identities=13% Similarity=0.198 Sum_probs=78.0
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHH--HHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIY--QKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 309 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~--~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~ 309 (438)
+...||+|+|+|||+||++|+.+.|.+.+.. .++.+. .++.|++|.+.
T Consensus 40 A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~-----------~fv~V~vD~e~------------------- 89 (151)
T 3ph9_A 40 AQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQN-----------KFIMLNLMHET------------------- 89 (151)
T ss_dssp HHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHH-----------TCEEEEESSCC-------------------
T ss_pred HHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhc-----------CeEEEEecCCc-------------------
Confidence 3346899999999999999999999988642 222221 36777776331
Q ss_pred chhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccC
Q 013684 310 PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL 374 (438)
Q Consensus 310 d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~ 374 (438)
..+...|++.++||++++|++|+++.+.. ..++...|.......+++.+.+++.++..
T Consensus 90 ---~~~~~~~~v~~~PT~~f~~~~G~~v~~~~----G~~~~~~~~~~~~~~~~ll~~~~~al~~~ 147 (151)
T 3ph9_A 90 ---TDKNLSPDGQYVPRIMFVDPSLTVRADIA----GRYSNRLYTYEPRDLPLLIENMKKALRLI 147 (151)
T ss_dssp ---SCGGGCTTCCCSSEEEEECTTSCBCTTCC----CSCTTSTTCCCGGGHHHHHHHHHHHHSCC
T ss_pred ---hhhHhhcCCCCCCEEEEECCCCCEEEEEe----CCcCCcccccchhhHHHHHHHHHHHHHHH
Confidence 22356789999999999999999988632 13344667788888899999988876644
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-13 Score=107.46 Aligned_cols=71 Identities=25% Similarity=0.451 Sum_probs=62.6
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
.++++++|+||++||++|+.+.|.+.+++++++ ++.++.|++|.. .
T Consensus 18 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----------~~~~~~vd~~~~-----------------------~ 63 (105)
T 3m9j_A 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-----------NVIFLEVDVDDC-----------------------Q 63 (105)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHST-----------TSEEEEEETTTC-----------------------H
T ss_pred cCCCeEEEEEECCCChhhHHHHHHHHHHHHHcc-----------CeEEEEEEhhhh-----------------------H
Confidence 468899999999999999999999999988775 478888888755 5
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+++.|++.++||++++ ++|+++.+
T Consensus 64 ~~~~~~~v~~~Pt~~~~-~~g~~~~~ 88 (105)
T 3m9j_A 64 DVASESEVKSMPTFQFF-KKGQKVGE 88 (105)
T ss_dssp HHHHHTTCCBSSEEEEE-ETTEEEEE
T ss_pred HHHHHcCCCcCcEEEEE-ECCeEEEE
Confidence 78899999999999999 88988876
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.6e-13 Score=109.64 Aligned_cols=69 Identities=17% Similarity=0.331 Sum_probs=60.4
Q ss_pred CEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 013684 237 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 316 (438)
Q Consensus 237 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 316 (438)
+.++|+||++||++|+.+.|.+.++++++++. ++.++.|+++.+ ..++
T Consensus 23 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~---------~v~~~~vd~~~~-----------------------~~~~ 70 (126)
T 1x5e_A 23 GDWMIEFYAPWCPACQNLQPEWESFAEWGEDL---------EVNIAKVDVTEQ-----------------------PGLS 70 (126)
T ss_dssp SEEEEEEECSSCHHHHHHHHHHHHHHHHHGGG---------TCEEEEEETTTC-----------------------HHHH
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccC---------CeEEEEEECcCC-----------------------HHHH
Confidence 34999999999999999999999999998754 588999988755 5688
Q ss_pred HhcCcCceeeEEEECCCCcEEE
Q 013684 317 KYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 317 ~~~~v~~~P~~~lid~~G~i~~ 338 (438)
+.|+|.++||++++ ++|++..
T Consensus 71 ~~~~v~~~Pt~~~~-~~G~~~~ 91 (126)
T 1x5e_A 71 GRFIINALPTIYHC-KDGEFRR 91 (126)
T ss_dssp HHTTCCSSSEEEEE-ETTEEEE
T ss_pred HHcCCcccCEEEEE-eCCeEEE
Confidence 99999999999999 8999643
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.9e-13 Score=114.85 Aligned_cols=71 Identities=18% Similarity=0.478 Sum_probs=63.7
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.|+++++++.++ +.++.|++|.+ ..
T Consensus 63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~----------v~~~~vd~~~~-----------------------~~ 109 (155)
T 2ppt_A 63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ----------VRLAKIDTQAH-----------------------PA 109 (155)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------CEEEEEETTTS-----------------------TH
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC----------EEEEEEeCCcc-----------------------HH
Confidence 5789999999999999999999999999998743 88999988755 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++||++++ ++|+++.+
T Consensus 110 l~~~~~i~~~Pt~~~~-~~G~~~~~ 133 (155)
T 2ppt_A 110 VAGRHRIQGIPAFILF-HKGRELAR 133 (155)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHHcCCCcCCEEEEE-eCCeEEEE
Confidence 8999999999999999 89999876
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.1e-13 Score=107.19 Aligned_cols=71 Identities=25% Similarity=0.520 Sum_probs=63.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++++++++ ++.++.|++|.. ..
T Consensus 21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~----------~v~~~~vd~~~~-----------------------~~ 67 (111)
T 3gnj_A 21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE----------SFGFYYVDVEEE-----------------------KT 67 (111)
T ss_dssp SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTT----------TSEEEEEETTTC-----------------------HH
T ss_pred cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCC----------ceEEEEEECCcC-----------------------hh
Confidence 468999999999999999999999999998864 388999998865 57
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++||++++ ++|+++.+
T Consensus 68 l~~~~~v~~~Pt~~~~-~~g~~~~~ 91 (111)
T 3gnj_A 68 LFQRFSLKGVPQILYF-KDGEYKGK 91 (111)
T ss_dssp HHHHTTCCSSCEEEEE-ETTEEEEE
T ss_pred HHHhcCCCcCCEEEEE-ECCEEEEE
Confidence 8999999999999999 89988765
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.7e-13 Score=105.54 Aligned_cols=71 Identities=30% Similarity=0.530 Sum_probs=63.7
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++++++++ ++.++.|+++.+ ..
T Consensus 19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 65 (107)
T 2i4a_A 19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG----------KVTVAKVNIDDN-----------------------PE 65 (107)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT----------SEEEEEEETTTC-----------------------CH
T ss_pred CCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC----------cEEEEEEECCCC-----------------------HH
Confidence 578999999999999999999999999998864 488999998755 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|+++++ ++|+++.+
T Consensus 66 ~~~~~~v~~~Pt~~~~-~~G~~~~~ 89 (107)
T 2i4a_A 66 TPNAYQVRSIPTLMLV-RDGKVIDK 89 (107)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHhcCCCccCEEEEE-eCCEEEEE
Confidence 8899999999999999 99999876
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.42 E-value=5.5e-13 Score=108.12 Aligned_cols=70 Identities=17% Similarity=0.390 Sum_probs=61.8
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|+.+.|.|.++++++++ ++.++.|++|.. .++
T Consensus 24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~ 70 (112)
T 1ep7_A 24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAG----------KVIFLKVDVDAV-----------------------AAV 70 (112)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TSEEEEEETTTT-----------------------HHH
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC----------CeEEEEEECCch-----------------------HHH
Confidence 78999999999999999999999999988763 478999988754 678
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++.|+|.++||++++ ++|+++.+
T Consensus 71 ~~~~~v~~~Pt~~~~-~~G~~~~~ 93 (112)
T 1ep7_A 71 AEAAGITAMPTFHVY-KDGVKADD 93 (112)
T ss_dssp HHHHTCCBSSEEEEE-ETTEEEEE
T ss_pred HHHcCCCcccEEEEE-ECCeEEEE
Confidence 899999999998887 89999876
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=108.68 Aligned_cols=75 Identities=17% Similarity=0.394 Sum_probs=62.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++++++++.. ..++.++.|+++.+ ..
T Consensus 24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~------~~~~~~~~vd~~~~-----------------------~~ 74 (133)
T 1x5d_A 24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQT------KGKVKLAAVDATVN-----------------------QV 74 (133)
T ss_dssp SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHT------TTSEEEEEEETTTC-----------------------CH
T ss_pred CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhc------CCcEEEEEEECCCC-----------------------HH
Confidence 47899999999999999999999999999997420 12588888888754 57
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|+++++++ |+++.+
T Consensus 75 l~~~~~v~~~Pt~~~~~~-g~~~~~ 98 (133)
T 1x5d_A 75 LASRYGIRGFPTIKIFQK-GESPVD 98 (133)
T ss_dssp HHHHHTCCSSSEEEEEET-TEEEEE
T ss_pred HHHhCCCCeeCeEEEEeC-CCceEE
Confidence 889999999999999976 876655
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6e-13 Score=114.85 Aligned_cols=89 Identities=11% Similarity=0.300 Sum_probs=71.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|+||++||++|+.+.|.+.+++++++ ++.++.|+++.. ..
T Consensus 31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----------~v~~~~vd~~~~-----------------------~~ 76 (153)
T 2wz9_A 31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-----------QVSFVKLEAEGV-----------------------PE 76 (153)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTS-----------------------HH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-----------CeEEEEEECCCC-----------------------HH
Confidence 48899999999999999999999999988863 578999988765 57
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN 373 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~ 373 (438)
+++.|+|.++|++++++ +|+++.+. .|. .. ++|.+.|++.+..
T Consensus 77 l~~~~~v~~~Pt~~~~~-~G~~~~~~-------~G~-----~~---~~l~~~i~~~l~~ 119 (153)
T 2wz9_A 77 VSEKYEISSVPTFLFFK-NSQKIDRL-------DGA-----HA---PELTKKVQRHASS 119 (153)
T ss_dssp HHHHTTCCSSSEEEEEE-TTEEEEEE-------ESS-----CH---HHHHHHHHHHSCT
T ss_pred HHHHcCCCCCCEEEEEE-CCEEEEEE-------eCC-----CH---HHHHHHHHHHhcc
Confidence 88999999999999997 99998763 231 22 4566667766554
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=111.90 Aligned_cols=71 Identities=18% Similarity=0.269 Sum_probs=62.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+|||+||++|+.+.|.+.++++++++ ++.++.|++|.+ .+
T Consensus 22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----------~v~~~~vd~d~~-----------------------~~ 68 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN----------FAVIYLVDITEV-----------------------PD 68 (142)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT----------TEEEEEEETTTC-----------------------CT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC----------CeEEEEEccccC-----------------------HH
Confidence 479999999999999999999999999999864 488999998855 45
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++||++++ ++|+++.+
T Consensus 69 ~~~~~~i~~~Pt~~~~-~~G~~v~~ 92 (142)
T 1qgv_A 69 FNKMYELYDPCTVMFF-FRNKHIMI 92 (142)
T ss_dssp TTTSSCSCSSCEEEEE-ETTEEEEE
T ss_pred HHHHcCCCCCCEEEEE-ECCcEEEE
Confidence 7889999999999999 68888764
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=111.56 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=63.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.. ..
T Consensus 23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~----------v~~~~vd~~~~-----------------------~~ 69 (140)
T 3hz4_A 23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS----------AVFGRINIATN-----------------------PW 69 (140)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------SEEEEEETTTC-----------------------HH
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc----------eEEEEEECCcC-----------------------Hh
Confidence 4789999999999999999999999999998753 78999998765 57
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++||++++ ++|+++.+
T Consensus 70 l~~~~~v~~~Pt~~~~-~~G~~~~~ 93 (140)
T 3hz4_A 70 TAEKYGVQGTPTFKFF-CHGRPVWE 93 (140)
T ss_dssp HHHHHTCCEESEEEEE-ETTEEEEE
T ss_pred HHHHCCCCcCCEEEEE-eCCcEEEE
Confidence 8899999999999999 89998865
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-13 Score=110.30 Aligned_cols=71 Identities=21% Similarity=0.396 Sum_probs=62.5
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
..+++++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.+ .
T Consensus 35 ~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----------~v~~~~vd~d~~-----------------------~ 80 (125)
T 1r26_A 35 SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-----------TVKFAKVDADNN-----------------------S 80 (125)
T ss_dssp HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------H
T ss_pred ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-----------CCEEEEEECCCC-----------------------H
Confidence 367899999999999999999999999988873 478999998765 5
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++++.|+|.++||++++ ++|+++.+
T Consensus 81 ~l~~~~~v~~~Pt~~i~-~~G~~~~~ 105 (125)
T 1r26_A 81 EIVSKCRVLQLPTFIIA-RSGKMLGH 105 (125)
T ss_dssp HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHHHcCCCcccEEEEE-eCCeEEEE
Confidence 78999999999998888 89998876
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=104.70 Aligned_cols=72 Identities=28% Similarity=0.581 Sum_probs=63.1
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
.++++++|+||++||++|+.+.|.+.++++++++ ++.++.|++|.+ .
T Consensus 18 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~v~~~~~-----------------------~ 64 (106)
T 1xwb_A 18 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD----------NVVVLKVDVDEC-----------------------E 64 (106)
T ss_dssp HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TEEEEEEETTTC-----------------------H
T ss_pred cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC----------CeEEEEEeccch-----------------------H
Confidence 4689999999999999999999999999888753 588999988754 5
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+++.|++.++|+++++ ++|+++.+
T Consensus 65 ~~~~~~~v~~~Pt~~~~-~~G~~~~~ 89 (106)
T 1xwb_A 65 DIAMEYNISSMPTFVFL-KNGVKVEE 89 (106)
T ss_dssp HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHHHcCCCcccEEEEE-cCCcEEEE
Confidence 68899999999998888 79998876
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-14 Score=125.64 Aligned_cols=80 Identities=18% Similarity=0.368 Sum_probs=63.6
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
.+.....+||+++|+|||+||++|+.+.|.|.++.+.+... +.++.|++|.+.
T Consensus 38 ~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~----------~~~~~v~~d~~~----------------- 90 (164)
T 1sen_A 38 GKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS----------HNFVMVNLEDEE----------------- 90 (164)
T ss_dssp HHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH----------TTSEEEEEEGGG-----------------
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcC----------CeEEEEEecCCc-----------------
Confidence 56666678999999999999999999999999987665543 567888887542
Q ss_pred CCchhHHHHHhcCc--CceeeEEEECCCCcEEEc
Q 013684 308 GDPTIKELTKYFDV--QGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 308 ~~d~~~~l~~~~~v--~~~P~~~lid~~G~i~~~ 339 (438)
..+...|++ .++||++++|++|+++.+
T Consensus 91 -----~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~ 119 (164)
T 1sen_A 91 -----EPKDEDFSPDGGYIPRILFLDPSGKVHPE 119 (164)
T ss_dssp -----SCSCGGGCTTCSCSSEEEEECTTSCBCTT
T ss_pred -----hHHHHHhcccCCcCCeEEEECCCCCEEEE
Confidence 114556777 669999999999999876
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-14 Score=119.03 Aligned_cols=97 Identities=14% Similarity=0.234 Sum_probs=74.1
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecC
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D 115 (438)
+|..+|+|+ .+.+.++....+++.+||+++|+||++||++|+.+.|.+ .++++.++ ++.++.|+++
T Consensus 6 ~~~~~~~f~-------~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~----~~~~~~vd~~ 74 (134)
T 2fwh_A 6 QTQTHLNFT-------QIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA----DTVLLQANVT 74 (134)
T ss_dssp ----CCCCE-------ECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT----TSEEEEEECT
T ss_pred ccccCCCcE-------EecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc----CcEEEEEeCC
Confidence 455556655 234555555667777899999999999999999999998 88888874 3888888876
Q ss_pred CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcc
Q 013684 116 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
... +....+++.|+|.++|+++++|+ +|+++
T Consensus 75 ~~~--------------------~~~~~l~~~~~v~~~Pt~~~~d~---~G~~v 105 (134)
T 2fwh_A 75 AND--------------------AQDVALLKHLNVLGLPTILFFDG---QGQEH 105 (134)
T ss_dssp TCC--------------------HHHHHHHHHTTCCSSSEEEEECT---TSCBC
T ss_pred CCc--------------------chHHHHHHHcCCCCCCEEEEECC---CCCEe
Confidence 431 12278999999999999999999 99987
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=108.07 Aligned_cols=70 Identities=26% Similarity=0.536 Sum_probs=61.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.+ .+
T Consensus 33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----------~~~~~~vd~~~~-----------------------~~ 78 (122)
T 2vlu_A 33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFP-----------NAVFLKVDVDEL-----------------------KP 78 (122)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HH
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----------CcEEEEEECCCC-----------------------HH
Confidence 57899999999999999999999999888765 478898988765 57
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++||++++ ++|+++.+
T Consensus 79 ~~~~~~v~~~Pt~~~~-~~G~~~~~ 102 (122)
T 2vlu_A 79 IAEQFSVEAMPTFLFM-KEGDVKDR 102 (122)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHHcCCCcccEEEEE-eCCEEEEE
Confidence 8899999999998888 89999876
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.2e-13 Score=109.48 Aligned_cols=71 Identities=28% Similarity=0.464 Sum_probs=62.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.|++++|+||++||++|+.+.|.|.++++++ . ++.++.|+++.+ .+
T Consensus 22 ~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~----------~v~~~~vd~~~~-----------------------~~ 67 (118)
T 2f51_A 22 APGLVLVDFFATWCGPCQRLGQILPSIAEAN-K----------DVTFIKVDVDKN-----------------------GN 67 (118)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-T----------TSEEEEEETTTC-----------------------HH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-C----------CeEEEEEECCCC-----------------------HH
Confidence 4789999999999999999999999999887 2 578999998865 56
Q ss_pred HHHhcCcCceeeEEEECC---CCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGP---EGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~---~G~i~~~ 339 (438)
+++.|+|.++|++++++. +|+++.+
T Consensus 68 ~~~~~~i~~~Pt~~~~~~~~~~G~~~~~ 95 (118)
T 2f51_A 68 AADAYGVSSIPALFFVKKEGNEIKTLDQ 95 (118)
T ss_dssp HHHHTTCCSSSEEEEEEEETTEEEEEEE
T ss_pred HHHhcCCCCCCEEEEEeCCCCcceEEEe
Confidence 889999999999999965 3888876
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-13 Score=120.09 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=93.7
Q ss_pred HhhccchhHHHHHhhcccccCCCC----------CEEecccc-CCCEE-EEEEeccCCccchh-hHHHHHHHHHHHhcCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIG----------EEVKVSDL-EGKVT-ALYFSANWYPPCGN-FTGVLVDVYEELRNNG 104 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g----------~~v~l~~~-~gk~v-ll~F~a~wC~~C~~-~~p~l~~l~~~~~~~~ 104 (438)
.+|+.+|+.+ +....+ +.++|+++ +||++ |++||+.|||+|.. ++|.|++.+++|++.|
T Consensus 11 ~~~~~~p~~~--------~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g 82 (176)
T 4f82_A 11 QVGDALPDAQ--------LFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAG 82 (176)
T ss_dssp CTTCBCCCCE--------EEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT
T ss_pred hcCCcCCceE--------EEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 4789999977 444433 67899997 99855 55777999999999 9999999999999987
Q ss_pred CCE-EEEEEecCCCHHHHHHhHhcCCcc--cccCCChHHHHHHhhhcCcC-----------ccceEEEecCCCCCCCccc
Q 013684 105 SDF-EVVFVSSDEDLNAFNNYRACMPWL--AVPYSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 105 ~~~-~iv~vs~D~~~~~~~~~~~~~~~~--~~~~~d~~~~~~l~~~~~v~-----------~~P~~~lvd~~~~~G~v~~ 170 (438)
+ +|++||+| +....++|.++.+.. ....+|.+ .++++.||+. ..|+++|| + +|+|++
T Consensus 83 --~d~VigIS~D-~~~~~~~f~~~~~l~~~f~lLsD~~--~~va~ayGv~~~~~~~G~g~~s~R~tfII-~---dG~I~~ 153 (176)
T 4f82_A 83 --IDEIWCVSVN-DAFVMGAWGRDLHTAGKVRMMADGS--AAFTHALGLTQDLSARGMGIRSLRYAMVI-D---GGVVKT 153 (176)
T ss_dssp --CCEEEEEESS-CHHHHHHHHHHTTCTTTSEEEECTT--CHHHHHHTCEEECGGGTCCEEECCEEEEE-E---TTEEEE
T ss_pred --CCEEEEEeCC-CHHHHHHHHHHhCCCCCceEEEcCc--hHHHHHhCCCccccccCCCcccccEEEEE-c---CCEEEE
Confidence 8 99999999 567788888877654 22233544 6888988873 25889999 8 999987
Q ss_pred ccc
Q 013684 171 HDG 173 (438)
Q Consensus 171 ~~~ 173 (438)
...
T Consensus 154 ~~~ 156 (176)
T 4f82_A 154 LAV 156 (176)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=108.72 Aligned_cols=73 Identities=23% Similarity=0.435 Sum_probs=61.7
Q ss_pred ccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 233 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 233 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
+.+||+++|+||++||++|+.+.|.+.+++++++ ++.++.|+++.+ .
T Consensus 34 ~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-----------~~~~~~vd~~~~----------------------~ 80 (124)
T 1faa_A 34 AAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-----------DVIFLKLDCNQE----------------------N 80 (124)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSST----------------------T
T ss_pred hcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC-----------CCEEEEEecCcc----------------------h
Confidence 3468999999999999999999999999988765 468888888732 2
Q ss_pred HHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 313 KELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 313 ~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.++++.|+|.++||++++ ++|+++.+
T Consensus 81 ~~~~~~~~v~~~Pt~~~~-~~G~~~~~ 106 (124)
T 1faa_A 81 KTLAKELGIRVVPTFKIL-KENSVVGE 106 (124)
T ss_dssp HHHHHHHCCSSSSEEEEE-ETTEEEEE
T ss_pred HHHHHHcCCCeeeEEEEE-eCCcEEEE
Confidence 678899999999997666 89999876
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=103.55 Aligned_cols=71 Identities=20% Similarity=0.438 Sum_probs=62.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++++++++ ++.++.|+++.+ ..
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 63 (105)
T 1fb6_A 17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG----------KIAVYKLNTDEA-----------------------PG 63 (105)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC-----------------------HH
T ss_pred CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcC----------ceEEEEEcCcch-----------------------HH
Confidence 478999999999999999999999999988864 378888888755 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|++.++|+++++ ++|+++.+
T Consensus 64 ~~~~~~v~~~Pt~~~~-~~g~~~~~ 87 (105)
T 1fb6_A 64 IATQYNIRSIPTVLFF-KNGERKES 87 (105)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHhCCCCcccEEEEE-eCCeEEEE
Confidence 8899999999999888 79998876
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=104.45 Aligned_cols=71 Identities=24% Similarity=0.468 Sum_probs=63.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++.+++++ ++.++.|+++.+ .+
T Consensus 17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 63 (109)
T 2yzu_A 17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG----------KLLVAKLDVDEN-----------------------PK 63 (109)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT----------TBEEEEEETTTC-----------------------HH
T ss_pred CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC----------ceEEEEEECCCC-----------------------Hh
Confidence 478999999999999999999999999988864 488999988765 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|++.++|+++++ ++|+++.+
T Consensus 64 ~~~~~~v~~~Pt~~~~-~~g~~~~~ 87 (109)
T 2yzu_A 64 TAMRYRVMSIPTVILF-KDGQPVEV 87 (109)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHhCCCCcCCEEEEE-eCCcEeee
Confidence 8899999999999999 89998875
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.5e-13 Score=109.39 Aligned_cols=72 Identities=21% Similarity=0.434 Sum_probs=63.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.+++++++++ ++.++.|++|.. .+
T Consensus 32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~---------~v~~~~vd~d~~-----------------------~~ 79 (121)
T 2j23_A 32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD---------KVGFYKVDVDEQ-----------------------SQ 79 (121)
T ss_dssp SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH---------HSEEEEEETTTC-----------------------HH
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC---------cEEEEEEECcCC-----------------------HH
Confidence 5789999999999999999999999999888764 588999998865 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++||++++ ++|+++.+
T Consensus 80 ~~~~~~v~~~Pt~~~~-~~G~~~~~ 103 (121)
T 2j23_A 80 IAQEVGIRAMPTFVFF-KNGQKIDT 103 (121)
T ss_dssp HHHHHTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHHcCCCcccEEEEE-ECCeEEee
Confidence 8899999999999999 69998876
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.38 E-value=6.8e-13 Score=108.73 Aligned_cols=72 Identities=26% Similarity=0.506 Sum_probs=61.5
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
++.+|++++|+||++||++|+.+.|.+.++++++ ++.++.|++|..
T Consensus 29 ~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~------------~~~~~~vd~~~~---------------------- 74 (117)
T 2xc2_A 29 EQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY------------DAIFVKVDVDKL---------------------- 74 (117)
T ss_dssp HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS------------SSEEEEEETTTS----------------------
T ss_pred HhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc------------CcEEEEEECCcc----------------------
Confidence 3447899999999999999999999999887765 267888888754
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.++++.|+|.++||++++ ++|+++.+
T Consensus 75 -~~~~~~~~v~~~Pt~~~~-~~G~~~~~ 100 (117)
T 2xc2_A 75 -EETARKYNISAMPTFIAI-KNGEKVGD 100 (117)
T ss_dssp -HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred -HHHHHHcCCCccceEEEE-eCCcEEEE
Confidence 678899999999998888 89999876
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.9e-14 Score=118.50 Aligned_cols=83 Identities=25% Similarity=0.497 Sum_probs=67.7
Q ss_pred CCceeeccccCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCC
Q 013684 225 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP 301 (438)
Q Consensus 225 g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 301 (438)
.+ .+.++..+||+++|+||++||++|+.+.|.+ .++.+.+++ ++.++.|+++.+.
T Consensus 9 ~~-~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~----------~~~~~~vd~~~~~----------- 66 (130)
T 2lst_A 9 PE-ALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA----------RFVVASVSVDTPE----------- 66 (130)
Confidence 44 6777788899999999999999999999999 888877764 3677777775332
Q ss_pred CcccccCCchhHHHHHhcCcCceeeEEEECC-CCcE--EEc
Q 013684 302 WLALPFGDPTIKELTKYFDVQGIPCLVIIGP-EGKT--VTK 339 (438)
Q Consensus 302 ~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~-~G~i--~~~ 339 (438)
...+++.|+|.++||++++|+ +|++ +.+
T Consensus 67 ----------~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~ 97 (130)
T 2lst_A 67 ----------GQELARRYRVPGTPTFVFLVPKAGAWEEVGR 97 (130)
Confidence 367889999999999999996 5888 655
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.4e-13 Score=109.63 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=60.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++++++++ ++.++.|+++.. .+
T Consensus 20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~ 66 (122)
T 3aps_A 20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG----------KVRAGKVDCQAY-----------------------PQ 66 (122)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT----------TCEEEEEETTTC-----------------------HH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CeEEEEEeCcCC-----------------------HH
Confidence 468999999999999999999999999998874 488999988765 56
Q ss_pred HHHhcCcCceeeEEEECCCCcE
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i 336 (438)
+++.|+|.++||+++++++|++
T Consensus 67 ~~~~~~v~~~Pt~~~~~~~~~~ 88 (122)
T 3aps_A 67 TCQKAGIKAYPSVKLYQYERAK 88 (122)
T ss_dssp HHHHTTCCSSSEEEEEEEEGGG
T ss_pred HHHHcCCCccceEEEEeCCCcc
Confidence 8899999999999999877763
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.7e-13 Score=121.24 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=72.9
Q ss_pred CCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 013684 216 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 294 (438)
Q Consensus 216 ~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 294 (438)
.++..+ +.++. .+......|++++|+||++||++|+.+.|.+.++++++++ ++.++.|+++..
T Consensus 94 ~~~~~v~~l~~~-~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~----------~v~~~~vd~~~~----- 157 (210)
T 3apq_A 94 DDDPEIITLERR-EFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDG----------LLRIGAVNCGDD----- 157 (210)
T ss_dssp TTCTTSEECCHH-HHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBT----------TBEEEEEETTTC-----
T ss_pred CCCCceEEecHH-HHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcC----------ceEEEEEECCcc-----
Confidence 344455 66666 5554446789999999999999999999999999998864 388999988765
Q ss_pred HHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 295 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 295 ~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..+++.|+|.++||++++ ++|+++.+
T Consensus 158 ------------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 183 (210)
T 3apq_A 158 ------------------RMLCRMKGVNSYPSLFIF-RSGMAAVK 183 (210)
T ss_dssp ------------------HHHHHHTTCCSSSEEEEE-CTTSCCEE
T ss_pred ------------------HHHHHHcCCCcCCeEEEE-ECCCceeE
Confidence 578899999999999999 89988665
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=106.52 Aligned_cols=70 Identities=26% Similarity=0.528 Sum_probs=61.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+||+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.+ .+
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~-----------~v~~~~vd~~~~-----------------------~~ 74 (114)
T 2oe3_A 29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP-----------DVRFVKCDVDES-----------------------PD 74 (114)
T ss_dssp HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCC-----------------------HH
Confidence 57899999999999999999999999888764 378899988755 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|+++++ ++|+++.+
T Consensus 75 l~~~~~v~~~Pt~~~~-~~G~~~~~ 98 (114)
T 2oe3_A 75 IAKECEVTAMPTFVLG-KDGQLIGK 98 (114)
T ss_dssp HHHHTTCCSBSEEEEE-ETTEEEEE
T ss_pred HHHHCCCCcccEEEEE-eCCeEEEE
Confidence 8899999999999888 89999876
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-12 Score=101.75 Aligned_cols=70 Identities=17% Similarity=0.458 Sum_probs=61.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|+||++||++|+.+.|.+.+++++++ ++.++.|++|.+ .+
T Consensus 15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~-----------------------~~ 60 (104)
T 2e0q_A 15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-----------QVGFGKLNSDEN-----------------------PD 60 (104)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HH
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHHcC-----------CceEEEEECCCC-----------------------HH
Confidence 57899999999999999999999999887764 378999988765 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|++.++|+++++ ++|+++.+
T Consensus 61 ~~~~~~v~~~Pt~~~~-~~g~~~~~ 84 (104)
T 2e0q_A 61 IAARYGVMSLPTVIFF-KDGEPVDE 84 (104)
T ss_dssp HHHHTTCCSSCEEEEE-ETTEEEEE
T ss_pred HHHhCCccccCEEEEE-ECCeEhhh
Confidence 8899999999999999 89998875
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-11 Score=126.96 Aligned_cols=67 Identities=13% Similarity=0.263 Sum_probs=57.2
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|+|||+||++|+.+.|.|.++++++++. +.++.|+.+.. ..+++.|+|
T Consensus 21 ~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~v 73 (481)
T 3f8u_A 21 AGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI---VPLAKVDCTAN------------------------TNTCNKYGV 73 (481)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CCEEEEETTTC------------------------HHHHHHTTC
T ss_pred CCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCc---eEEEEEECCCC------------------------HHHHHhcCC
Confidence 489999999999999999999999999998754 66777766543 688999999
Q ss_pred CccceEEEecCCCCCCCc
Q 013684 151 EGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v 168 (438)
.++||++++. +|+.
T Consensus 74 ~~~Ptl~~~~----~g~~ 87 (481)
T 3f8u_A 74 SGYPTLKIFR----DGEE 87 (481)
T ss_dssp CEESEEEEEE----TTEE
T ss_pred CCCCEEEEEe----CCce
Confidence 9999999996 6643
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=103.68 Aligned_cols=71 Identities=30% Similarity=0.631 Sum_probs=61.8
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
..|++++|+||++||++|+.+.|.+.+++++++ ++.++.|+++.. .
T Consensus 17 ~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-----------~~~~~~v~~~~~-----------------------~ 62 (104)
T 2vim_A 17 NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-----------EVEFAKVDVDQN-----------------------E 62 (104)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------H
T ss_pred cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-----------CCEEEEEeccCC-----------------------H
Confidence 468899999999999999999999999888764 478999988754 5
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+++.|++.++|+++++ ++|+++.+
T Consensus 63 ~~~~~~~v~~~Pt~~~~-~~g~~~~~ 87 (104)
T 2vim_A 63 EAAAKYSVTAMPTFVFI-KDGKEVDR 87 (104)
T ss_dssp HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHHHcCCccccEEEEE-eCCcEEEE
Confidence 68899999999998888 59998876
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=105.52 Aligned_cols=70 Identities=21% Similarity=0.417 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.|++++|+||++||++|+.+.|.+.+++++++ ++.++.|+++.. ..
T Consensus 25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-----------~v~~~~vd~~~~-----------------------~~ 70 (112)
T 1syr_A 25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-----------KMVFIKVDVDEV-----------------------SE 70 (112)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTT-----------------------HH
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-----------CCEEEEEECCCC-----------------------HH
Confidence 57999999999999999999999999988764 478999988755 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|+++++ ++|+++.+
T Consensus 71 ~~~~~~v~~~Pt~~~~-~~G~~~~~ 94 (112)
T 1syr_A 71 VTEKENITSMPTFKVY-KNGSSVDT 94 (112)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHHcCCCcccEEEEE-ECCcEEEE
Confidence 8899999999998888 79998876
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-12 Score=104.76 Aligned_cols=71 Identities=25% Similarity=0.548 Sum_probs=62.2
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
..|++++|+||++||++|+.+.|.+.++.++++ ++.++.|++|.. .
T Consensus 24 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----------~v~~~~v~~~~~-----------------------~ 69 (113)
T 1ti3_A 24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-----------NVTFLKVDVDEL-----------------------K 69 (113)
T ss_dssp TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-----------SEEEEEEETTTC-----------------------H
T ss_pred hcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-----------CcEEEEEEcccc-----------------------H
Confidence 358899999999999999999999999887764 588999988755 5
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+++.|++.++|+++++ ++|+++.+
T Consensus 70 ~~~~~~~v~~~Pt~~~~-~~G~~~~~ 94 (113)
T 1ti3_A 70 AVAEEWNVEAMPTFIFL-KDGKLVDK 94 (113)
T ss_dssp HHHHHHHCSSTTEEEEE-ETTEEEEE
T ss_pred HHHHhCCCCcccEEEEE-eCCEEEEE
Confidence 68899999999999999 79999876
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.9e-12 Score=107.14 Aligned_cols=83 Identities=23% Similarity=0.368 Sum_probs=61.6
Q ss_pred CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCC
Q 013684 222 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP 301 (438)
Q Consensus 222 ~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 301 (438)
..+++ .+...-..++.++|+||++||++|+.+.|.|.++++++++ ++.++.|+++.+
T Consensus 37 ~l~~~-~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~----------~v~~~~vd~~~~------------ 93 (140)
T 1v98_A 37 EADEK-GFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAG----------RLKVVKVNVDEH------------ 93 (140)
T ss_dssp -------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TEEEEEEETTTC------------
T ss_pred cCCHH-HHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccC----------ceEEEEEECCCC------------
Confidence 44444 4443323343499999999999999999999999988864 488999998865
Q ss_pred CcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 302 WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 302 ~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..+++.|+|.++||++++ ++|+++.+
T Consensus 94 -----------~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 119 (140)
T 1v98_A 94 -----------PGLAARYGVRSVPTLVLF-RRGAPVAT 119 (140)
T ss_dssp -----------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred -----------HHHHHHCCCCccCEEEEE-eCCcEEEE
Confidence 568899999999999999 89998875
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=107.23 Aligned_cols=71 Identities=31% Similarity=0.572 Sum_probs=62.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++++++++ ++.++.|+++.+ ..
T Consensus 29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 75 (121)
T 2i1u_A 29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERAT----------DLTVAKLDVDTN-----------------------PE 75 (121)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC-----------------------HH
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CeEEEEEECCCC-----------------------HH
Confidence 478999999999999999999999999988764 488999998765 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|+++++ ++|+++.+
T Consensus 76 ~~~~~~i~~~Pt~~~~-~~g~~~~~ 99 (121)
T 2i1u_A 76 TARNFQVVSIPTLILF-KDGQPVKR 99 (121)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHhcCCCcCCEEEEE-ECCEEEEE
Confidence 8899999999999998 69998876
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=104.07 Aligned_cols=73 Identities=22% Similarity=0.455 Sum_probs=62.4
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|+.+.|.+.++++++... ..++.++.|+++.+ .++
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-------~~~~~~~~vd~~~~-----------------------~~l 70 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPG-------LAGVKIAEVDCTAE-----------------------RNI 70 (111)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC--------CCEEEEEEETTTC-----------------------HHH
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHHhhcc-------CCceEEEEEecccc-----------------------HhH
Confidence 789999999999999999999999998876532 24688888888755 568
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++.|+|.++||++++ ++|+++.+
T Consensus 71 ~~~~~v~~~Pt~~~~-~~g~~~~~ 93 (111)
T 3uvt_A 71 CSKYSVRGYPTLLLF-RGGKKVSE 93 (111)
T ss_dssp HHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHhcCCCcccEEEEE-eCCcEEEe
Confidence 999999999999999 88988765
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7.9e-12 Score=122.78 Aligned_cols=164 Identities=16% Similarity=0.156 Sum_probs=104.1
Q ss_pred CCCEEEEEEeccCCccchhhHHH-------HHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHH
Q 013684 70 EGKVTALYFSANWYPPCGNFTGV-------LVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK 142 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~-------l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~ 142 (438)
.+++++|+|||+||+ |+.+.|. +.++++.+++.+ +.++.|+.+.. .
T Consensus 27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~--v~~~~Vd~~~~------------------------~ 79 (350)
T 1sji_A 27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKD--IGFVMVDAKKE------------------------A 79 (350)
T ss_dssp TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSS--EEEEEEETTTT------------------------H
T ss_pred hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcC--cEEEEEeCCCC------------------------H
Confidence 478999999999999 9999999 888888887654 88887776643 6
Q ss_pred HHhhhcCcCccceEEEecCCCCCCCcccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCCCccC
Q 013684 143 ALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLG 222 (438)
Q Consensus 143 ~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~f~l~ 222 (438)
.+++.|+|.++||++++. +|++.... |. ...+.+..... . ..+ |... .
T Consensus 80 ~l~~~~~v~~~Pt~~~~~----~g~~~~~~--------G~----~~~~~l~~~i~---~---------~~~---~~~~-~ 127 (350)
T 1sji_A 80 KLAKKLGFDEEGSLYVLK----GDRTIEFD--------GE----FAADVLVEFLL---D---------LIE---DPVE-I 127 (350)
T ss_dssp HHHHHHTCCSTTEEEEEE----TTEEEEEC--------SC----CCHHHHHHHHH---T---------TSS---CSEE-E
T ss_pred HHHHhcCCCccceEEEEE----CCcEEEec--------CC----CCHHHHHHHHH---H---------hcC---Ccce-e
Confidence 789999999999999995 77633111 11 12222221111 0 111 1111 1
Q ss_pred CCCCceee-ccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCC
Q 013684 223 HPPDEKVP-VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP 301 (438)
Q Consensus 223 ~~g~~~~~-l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 301 (438)
.+..+.+. +-+...+.++|.|+++||. ...+.+.++++.+++. +.+..++ +
T Consensus 128 l~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~~~~~A~~~~~~----------~~f~~~~---~------------ 179 (350)
T 1sji_A 128 INSKLEVQAFERIEDQIKLIGFFKSEES---EYYKAFEEAAEHFQPY----------IKFFATF---D------------ 179 (350)
T ss_dssp CCSHHHHHHHHHCCSSCEEEEECSCTTS---HHHHHHHHHHHHTTTT----------SEEEEEC---C------------
T ss_pred ccchHHHHHHhccCCCcEEEEEECCCCc---HHHHHHHHHHHhhccC----------cEEEEEC---C------------
Confidence 11100110 0001234678889988864 4457788888887654 4444431 2
Q ss_pred CcccccCCchhHHHHHhcCcCceeeEEEECC
Q 013684 302 WLALPFGDPTIKELTKYFDVQGIPCLVIIGP 332 (438)
Q Consensus 302 ~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~ 332 (438)
..+++.|++. .|+++++.+
T Consensus 180 -----------~~~~~~~~v~-~p~i~~~~~ 198 (350)
T 1sji_A 180 -----------KGVAKKLSLK-MNEVDFYEP 198 (350)
T ss_dssp -----------HHHHHHHTCC-TTCEEEECT
T ss_pred -----------HHHHHHcCCC-CCcEEEEeC
Confidence 4588899999 999999966
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.8e-12 Score=122.23 Aligned_cols=67 Identities=28% Similarity=0.520 Sum_probs=59.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+|||+||++|+.+.|.|.++++++++. +.++.|++|.+.. ..+++.|+
T Consensus 34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~---~~~~~v~~d~~~~----------------------~~l~~~~~ 88 (298)
T 3ed3_A 34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV---VQVAAVNCDLNKN----------------------KALCAKYD 88 (298)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTSTTT----------------------HHHHHHTT
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC---cEEEEEEccCccC----------------------HHHHHhCC
Confidence 4789999999999999999999999999998653 8889998885432 78999999
Q ss_pred cCccceEEEecC
Q 013684 150 IEGIPCLVVLQP 161 (438)
Q Consensus 150 v~~~P~~~lvd~ 161 (438)
|.++|++++++.
T Consensus 89 I~~~Pt~~~~~~ 100 (298)
T 3ed3_A 89 VNGFPTLMVFRP 100 (298)
T ss_dssp CCBSSEEEEEEC
T ss_pred CCccceEEEEEC
Confidence 999999999984
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-12 Score=104.76 Aligned_cols=70 Identities=27% Similarity=0.559 Sum_probs=61.5
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.|++++|+||++||++|+.+.|.+.++.++++ ++.++.|++|.. ..
T Consensus 27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----------~~~~~~v~~~~~-----------------------~~ 72 (118)
T 2vm1_A 27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-----------GAIFLKVDVDEL-----------------------KD 72 (118)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTS-----------------------HH
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-----------CcEEEEEEcccC-----------------------HH
Confidence 47899999999999999999999999988765 478888888754 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|++.++|+++++ ++|+++.+
T Consensus 73 ~~~~~~v~~~Pt~~~~-~~g~~~~~ 96 (118)
T 2vm1_A 73 VAEAYNVEAMPTFLFI-KDGEKVDS 96 (118)
T ss_dssp HHHHTTCCSBSEEEEE-ETTEEEEE
T ss_pred HHHHcCCCcCcEEEEE-eCCeEEEE
Confidence 8899999999999998 89998876
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.34 E-value=7.2e-13 Score=116.06 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=62.8
Q ss_pred eccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHH
Q 013684 65 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 144 (438)
Q Consensus 65 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 144 (438)
.+++++||+++|+|||+|||+|+.+.|.|.++++++. ++.++.|++|.. .++
T Consensus 48 ~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~----~v~~~~v~~d~~------------------------~~~ 99 (167)
T 1z6n_A 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP----NIELAIISKGRA------------------------EDD 99 (167)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT----TEEEEEECHHHH------------------------HHH
T ss_pred HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC----CcEEEEEECCCC------------------------HHH
Confidence 4667789999999999999999999999999998752 488888876633 455
Q ss_pred hhhcC---cCccceEEEecCCCCCCCccccc
Q 013684 145 NRKFD---IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 145 ~~~~~---v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
...|. +.++||+++++. +|+++.+.
T Consensus 100 ~~~~~~~~v~~iPt~i~~~~---~G~~~~~~ 127 (167)
T 1z6n_A 100 LRQRLALERIAIPLVLVLDE---EFNLLGRF 127 (167)
T ss_dssp TTTTTTCSSCCSSEEEEECT---TCCEEEEE
T ss_pred HHHHHHcCCCCcCeEEEECC---CCCEEEEE
Confidence 56665 999999999998 88876543
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-12 Score=109.73 Aligned_cols=78 Identities=26% Similarity=0.398 Sum_probs=65.9
Q ss_pred cCCCEEEEEEeccCCccchhhHHHHH--HHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVLV--DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l~--~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
.+||+++|+||++||++|+.+.|.|. ++.+.+++. +.++.|+++.. +. ...+++
T Consensus 27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~---~~~~~vd~~~~-------------------~~--~~~l~~ 82 (133)
T 3fk8_A 27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH---FEVVKIDVGNF-------------------DR--NLELSQ 82 (133)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH---CEEEEEECTTT-------------------TS--SHHHHH
T ss_pred hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC---EEEEEEeCCcc-------------------cc--hHHHHH
Confidence 46899999999999999999999999 999988653 88888888421 11 168899
Q ss_pred hcCc---CccceEEEecCCCCCCCcccccc
Q 013684 147 KFDI---EGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 147 ~~~v---~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.|+| .++|+++++|+ +|+++.+..
T Consensus 83 ~~~v~~~~~~Pt~~~~d~---~G~~~~~~~ 109 (133)
T 3fk8_A 83 AYGDPIQDGIPAVVVVNS---DGKVRYTTK 109 (133)
T ss_dssp HTTCGGGGCSSEEEEECT---TSCEEEECC
T ss_pred HhCCccCCccceEEEECC---CCCEEEEec
Confidence 9999 99999999999 999987654
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-12 Score=111.91 Aligned_cols=69 Identities=13% Similarity=0.346 Sum_probs=59.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++|+|.|||+||+||+.+.|.|.++++++.+. +.++.|++|+. .+++..|+
T Consensus 40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~---v~f~kVDVDe~------------------------~e~a~~y~ 92 (160)
T 2av4_A 40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF---CVIYLVDITEV------------------------PDFNTMYE 92 (160)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTC------------------------CTTTTTTT
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC---cEEEEEECCCC------------------------HHHHHHcC
Confidence 3589999999999999999999999999998653 88888888855 56789999
Q ss_pred cCccceEEEecCCCCCCCcc
Q 013684 150 IEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~ 169 (438)
|..+||++++. +|+.+
T Consensus 93 V~siPT~~fFk----~G~~v 108 (160)
T 2av4_A 93 LYDPVSVMFFY----RNKHM 108 (160)
T ss_dssp CCSSEEEEEEE----TTEEE
T ss_pred CCCCCEEEEEE----CCEEE
Confidence 99999999887 66665
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-12 Score=123.18 Aligned_cols=72 Identities=19% Similarity=0.374 Sum_probs=64.5
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
-+||+|+|+||++||++|+.+.|.+.++++++++ ++.++.|++|.+ .
T Consensus 24 ~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~----------~~~~~~vd~~~~-----------------------~ 70 (287)
T 3qou_A 24 SMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG----------QFILAKLDCDAE-----------------------Q 70 (287)
T ss_dssp TTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTS----------SSEEEEEETTTC-----------------------H
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCC----------CeEEEEEeCccC-----------------------H
Confidence 3589999999999999999999999999999874 388999998865 5
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+++.|+|.++||++++ ++|+++.+
T Consensus 71 ~~~~~~~v~~~Pt~~~~-~~G~~~~~ 95 (287)
T 3qou_A 71 MIAAQFGLRAIPTVYLF-QNGQPVDG 95 (287)
T ss_dssp HHHHTTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHHHcCCCCCCeEEEE-ECCEEEEE
Confidence 78999999999999999 89998875
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-13 Score=117.32 Aligned_cols=93 Identities=16% Similarity=0.312 Sum_probs=71.4
Q ss_pred CCCEEeccccCCCEEEEEEe-ccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccC
Q 013684 60 IGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY 135 (438)
Q Consensus 60 ~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~ 135 (438)
.|+.+.++..+||+++|+|| ++||++|+.+.|.| .++.+.+.. ++.++.|+.+.... +++
T Consensus 36 ~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~---~~~~v~vd~~~~~~-------------~~~ 99 (154)
T 2ju5_A 36 YAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV---HLHMVEVDFPQKNH-------------QPE 99 (154)
T ss_dssp HHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH---HCEEEEEECCSSCC-------------CCH
T ss_pred HHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC---cEEEEEecCccccC-------------CCh
Confidence 34556677778999999999 99999999999999 677655533 38888888775531 111
Q ss_pred CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 136 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 136 ~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
...+....+++.|+|.++|+++++|+ +|+++.+
T Consensus 100 ~~~~~~~~l~~~~~v~~~Pt~~~~d~---~G~~~~~ 132 (154)
T 2ju5_A 100 EQRQKNQELKAQYKVTGFPELVFIDA---EGKQLAR 132 (154)
T ss_dssp HHHHHHHHHHHHTTCCSSSEEEEECT---TCCEEEE
T ss_pred hhHhhHHHHHHHcCCCCCCEEEEEcC---CCCEEEE
Confidence 12233478999999999999999999 9998865
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-12 Score=106.37 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=62.7
Q ss_pred CCCCCceeecc-ccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC
Q 013684 222 GHPPDEKVPVS-SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 300 (438)
Q Consensus 222 ~~~g~~~~~l~-~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 300 (438)
+++++ .+... ..++++++|+||++||++|+.+.|.|.++++++++. ....++.++.|+++...
T Consensus 11 ~l~~~-~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-----~~~~~v~~~~vd~~~~~---------- 74 (121)
T 2djj_A 11 VVVAK-NYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKS-----EFKDRVVIAKVDATAND---------- 74 (121)
T ss_dssp ECCTT-TTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTS-----SCTTSSEEEEEETTTSC----------
T ss_pred Eeccc-CHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhc-----ccCCceEEEEEECcccc----------
Confidence 55666 55443 246899999999999999999999999999999751 00025788888877431
Q ss_pred CCcccccCCchhHHHHHhcCcCceeeEEEECCCCcE
Q 013684 301 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 301 ~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i 336 (438)
+++ +|.++||+++++++|++
T Consensus 75 --------------~~~--~v~~~Pt~~~~~~~~~~ 94 (121)
T 2djj_A 75 --------------VPD--EIQGFPTIKLYPAGAKG 94 (121)
T ss_dssp --------------CSS--CCSSSSEEEEECSSCTT
T ss_pred --------------ccc--ccCcCCeEEEEeCcCCC
Confidence 222 99999999999888773
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-12 Score=117.10 Aligned_cols=104 Identities=17% Similarity=0.351 Sum_probs=78.0
Q ss_pred CCCCCceeecc-ccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC
Q 013684 222 GHPPDEKVPVS-SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 300 (438)
Q Consensus 222 ~~~g~~~~~l~-~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 300 (438)
.++.+ .+.-. .-++|+++|+||++||++|+.+.|.|.+++++++++ +.++.|++|..
T Consensus 16 ~lt~~-~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~----------v~~~~vd~d~~----------- 73 (222)
T 3dxb_A 16 HLTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK----------LTVAKLNIDQN----------- 73 (222)
T ss_dssp ECCTT-THHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------CEEEEEETTTC-----------
T ss_pred eCCHH-HHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC----------cEEEEEECCCC-----------
Confidence 44555 44321 225799999999999999999999999999998753 88999998865
Q ss_pred CCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccC
Q 013684 301 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL 374 (438)
Q Consensus 301 ~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~ 374 (438)
..+++.|+|.++||++++ ++|+++.+. .|. .+ .++|.+.|++.++..
T Consensus 74 ------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~~-------~G~----~~---~~~l~~~l~~~l~~~ 120 (222)
T 3dxb_A 74 ------------PGTAPKYGIRGIPTLLLF-KNGEVAATK-------VGA----LS---KGQLKEFLDANLAGS 120 (222)
T ss_dssp ------------TTTGGGGTCCSBSEEEEE-ETTEEEEEE-------ESC----CC---HHHHHHHHHHHSCCS
T ss_pred ------------HHHHHHcCCCcCCEEEEE-ECCeEEEEe-------ccc----cC---hHHHHHHHHhhcccc
Confidence 457889999999999999 689888763 232 12 355666676666543
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-12 Score=103.67 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=61.0
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++.+++. ++.++.|+++.. .+
T Consensus 18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-----------~v~~~~vd~~~~-----------------------~~ 63 (110)
T 2l6c_A 18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-----------QVAISSVDSEAR-----------------------PE 63 (110)
T ss_dssp TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-----------TSCEEEEEGGGC-----------------------HH
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-----------CcEEEEEcCcCC-----------------------HH
Confidence 46899999999999999999999998877654 467888887654 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++||++++ ++|+++.+
T Consensus 64 l~~~~~v~~~Pt~~~~-~~G~~v~~ 87 (110)
T 2l6c_A 64 LMKELGFERVPTLVFI-RDGKVAKV 87 (110)
T ss_dssp HHHHTTCCSSCEEEEE-ESSSEEEE
T ss_pred HHHHcCCcccCEEEEE-ECCEEEEE
Confidence 8899999999999999 99999876
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-12 Score=105.70 Aligned_cols=67 Identities=12% Similarity=0.082 Sum_probs=57.7
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++|+|+|||+||++|+.+.|.|.+++++|. ++.++.|++|..
T Consensus 23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-----------~v~f~kvd~d~~-------------------------- 65 (118)
T 3evi_A 23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-----------ETKFVKAIVNSC-------------------------- 65 (118)
T ss_dssp TCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-----------TSEEEEEEGGGT--------------------------
T ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-----------CCEEEEEEhHHh--------------------------
Confidence 4599999999999999999999999998875 467888877632
Q ss_pred HHhcCcCceeeEEEECCCCcEEEcc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+.|+|.++||++++ ++|+.+.+.
T Consensus 66 ~~~~~v~~~PT~~~f-k~G~~v~~~ 89 (118)
T 3evi_A 66 IQHYHDNCLPTIFVY-KNGQIEAKF 89 (118)
T ss_dssp STTCCGGGCSEEEEE-ETTEEEEEE
T ss_pred HHHCCCCCCCEEEEE-ECCEEEEEE
Confidence 367999999999999 899999873
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-12 Score=108.62 Aligned_cols=71 Identities=23% Similarity=0.509 Sum_probs=58.2
Q ss_pred CCCEEEEEEecCCCh--------------hhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC
Q 013684 235 VGKTVGLYFSARWCI--------------PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 300 (438)
Q Consensus 235 ~gk~vll~F~a~wC~--------------~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 300 (438)
.||+++|+||++||+ +|+.+.|.+.+++++++++ +.++.|++|.+
T Consensus 20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~----------~~~~~vd~d~~----------- 78 (123)
T 1oaz_A 20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK----------LTVAKLNIDQN----------- 78 (123)
T ss_dssp CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-----------------CEEEEEETTSC-----------
T ss_pred CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC----------eEEEEEECCCC-----------
Confidence 579999999999999 9999999999999888753 78888888765
Q ss_pred CCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 301 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 301 ~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.++++.|+|.++||++++ ++|+++.+
T Consensus 79 ------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 104 (123)
T 1oaz_A 79 ------------PGTAPKYGIRGIPTLLLF-KNGEVAAT 104 (123)
T ss_dssp ------------TTTGGGGTCCBSSEEEEE-ESSSEEEE
T ss_pred ------------HHHHHHcCCCccCEEEEE-ECCEEEEE
Confidence 567899999999999999 99999876
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-12 Score=109.00 Aligned_cols=83 Identities=14% Similarity=0.339 Sum_probs=64.4
Q ss_pred CCCCCEEecccc-CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCC
Q 013684 58 KEIGEEVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYS 136 (438)
Q Consensus 58 ~~~g~~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~ 136 (438)
+++++.+..... .+++++|+||++||++|+.+.|.|.+++++++..+ ++.++.|+.+..
T Consensus 11 ~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~-~~~~~~vd~~~~------------------- 70 (133)
T 2dj3_A 11 VVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQK-DLVIAKMDATAN------------------- 70 (133)
T ss_dssp ECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSS-SEEEEEECTTTS-------------------
T ss_pred EEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCC-CEEEEEecCCcC-------------------
Confidence 566665554443 48999999999999999999999999999997642 477777765533
Q ss_pred ChHHHHHHhhhcCcCccceEEEecCCCCCCCc
Q 013684 137 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 137 d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v 168 (438)
..+++.|+|.++|++++++. +|.+
T Consensus 71 -----~~~~~~~~v~~~Pt~~~~~~---g~~~ 94 (133)
T 2dj3_A 71 -----DITNDQYKVEGFPTIYFAPS---GDKK 94 (133)
T ss_dssp -----CCCCSSCCCSSSSEEEEECT---TCTT
T ss_pred -----HHHHhhcCCCcCCEEEEEeC---CCcc
Confidence 23456799999999999986 5543
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.7e-12 Score=103.41 Aligned_cols=75 Identities=16% Similarity=0.397 Sum_probs=60.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.|++++|+||++|||+|+.+.|.+.+++++++ ..++.++++...+ .+....
T Consensus 28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~------------~~v~~~~~~~~~~-----------------~~~~~~ 78 (118)
T 1zma_A 28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETK------------AHIYFINSEEPSQ-----------------LNDLQA 78 (118)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC------------CCCEEEETTCGGG-----------------HHHHHH
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHhcC------------CeEEEEECCCcCc-----------------HHHHHH
Confidence 47899999999999999999999999988764 2467777764321 012367
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++||++++ ++|+++.+
T Consensus 79 ~~~~~~i~~~Pt~~~~-~~G~~~~~ 102 (118)
T 1zma_A 79 FRSRYGIPTVPGFVHI-TDGQINVR 102 (118)
T ss_dssp HHHHHTCCSSCEEEEE-ETTEEEEE
T ss_pred HHHHcCCCCCCeEEEE-ECCEEEEE
Confidence 8899999999999999 68988866
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.30 E-value=5.3e-12 Score=107.55 Aligned_cols=71 Identities=18% Similarity=0.390 Sum_probs=60.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++|+|+|||+||++|+.+.|.|.++++++++ ++.++.|++|.. .++++.|+
T Consensus 22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~------------------------~~~~~~~~ 74 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN---FAVIYLVDITEV------------------------PDFNKMYE 74 (142)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT---TEEEEEEETTTC------------------------CTTTTSSC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEccccC------------------------HHHHHHcC
Confidence 479999999999999999999999999999854 388888888754 34678899
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|++++++ +|+++..
T Consensus 75 i~~~Pt~~~~~----~G~~v~~ 92 (142)
T 1qgv_A 75 LYDPCTVMFFF----RNKHIMI 92 (142)
T ss_dssp SCSSCEEEEEE----TTEEEEE
T ss_pred CCCCCEEEEEE----CCcEEEE
Confidence 99999999996 7877654
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.7e-12 Score=109.78 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=61.8
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHH---HHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcc
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPK---LLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA 304 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~---l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~ 304 (438)
.+..+..+||+|+|+|||+||++|+.+.|. ..++.+.+.++ +.++.|+.|...+..+.|.
T Consensus 31 a~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~----------fv~ikVD~de~~~l~~~y~------- 93 (173)
T 3ira_A 31 AFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEA----------FVSIKVDREERPDIDNIYM------- 93 (173)
T ss_dssp HHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHH----------CEEEEEETTTCHHHHHHHH-------
T ss_pred HHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhc----------CceeeeCCcccCcHHHHHH-------
Confidence 455555679999999999999999999883 24566666654 6667776665433222221
Q ss_pred cccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 305 LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 305 ~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..+...+|+.++|++++++++|+++..
T Consensus 94 --------~~~q~~~gv~g~Pt~v~l~~dG~~v~~ 120 (173)
T 3ira_A 94 --------TVCQIILGRGGWPLNIIMTPGKKPFFA 120 (173)
T ss_dssp --------HHHHHHHSCCCSSEEEEECTTSCEEEE
T ss_pred --------HHHHHHcCCCCCcceeeECCCCCceee
Confidence 112223599999999999999999986
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-12 Score=109.39 Aligned_cols=75 Identities=20% Similarity=0.337 Sum_probs=63.3
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
..-++++++|+||++||++|+.+.|.+.++++++++. ++.++.|+++..
T Consensus 22 ~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~---------~v~~~~vd~~~~---------------------- 70 (137)
T 2dj0_A 22 ERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCT---------GLNFGKVDVGRY---------------------- 70 (137)
T ss_dssp HHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSS---------SCEEEECCTTTC----------------------
T ss_pred hcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---------CeEEEEEeCccC----------------------
Confidence 3345679999999999999999999999999998742 578888877654
Q ss_pred hHHHHHhcCcC------ceeeEEEECCCCcEEEc
Q 013684 312 IKELTKYFDVQ------GIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 312 ~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 339 (438)
.++++.|+|. ++||++++ ++|+++.+
T Consensus 71 -~~~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~ 102 (137)
T 2dj0_A 71 -TDVSTRYKVSTSPLTKQLPTLILF-QGGKEAMR 102 (137)
T ss_dssp -HHHHHHTTCCCCSSSSCSSEEEEE-SSSSEEEE
T ss_pred -HHHHHHccCcccCCcCCCCEEEEE-ECCEEEEE
Confidence 5678889998 99999999 79998875
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-11 Score=118.51 Aligned_cols=165 Identities=12% Similarity=0.098 Sum_probs=102.8
Q ss_pred CCCEEEEEEeccCCccchhhH------HHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHH
Q 013684 70 EGKVTALYFSANWYPPCGNFT------GVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 143 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 143 (438)
.+++++|+|||+||++|+... |.+.++++.++..+ +.++.|+.+.. ..
T Consensus 29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~--v~~~~Vd~~~~------------------------~~ 82 (367)
T 3us3_A 29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKG--VGFGLVDSEKD------------------------AA 82 (367)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTT--EEEEEEETTTT------------------------HH
T ss_pred hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCC--ceEEEEeCccc------------------------HH
Confidence 468999999999999974332 68888888887543 77777766643 68
Q ss_pred HhhhcCcCccceEEEecCCCCCCCcccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCCCccCC
Q 013684 144 LNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGH 223 (438)
Q Consensus 144 l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~f~l~~ 223 (438)
+++.|+|.++||++++. +|+.+... | +...+.+........ + |... ..
T Consensus 83 l~~~~~V~~~PTl~~f~----~G~~~~y~--------G----~~~~~~i~~~i~~~~------------~---~~v~-~i 130 (367)
T 3us3_A 83 VAKKLGLTEEDSIYVFK----EDEVIEYD--------G----EFSADTLVEFLLDVL------------E---DPVE-LI 130 (367)
T ss_dssp HHHHHTCCSTTEEEEEE----TTEEEECC--------S----CCSHHHHHHHHHHHH------------S---CSEE-EC
T ss_pred HHHHcCCCcCceEEEEE----CCcEEEeC--------C----CCCHHHHHHHHHHhc------------C---CCcE-Ec
Confidence 99999999999999997 66543211 1 122233322221111 1 1111 11
Q ss_pred CCCceee-ccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCC
Q 013684 224 PPDEKVP-VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 302 (438)
Q Consensus 224 ~g~~~~~-l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 302 (438)
...+.+. +-....++++|.|+.+||. ...+.+.++++.+.+. +.+..++ +
T Consensus 131 ~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~A~~~~~~----------~~F~~~~---~------------- 181 (367)
T 3us3_A 131 EGERELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHPY----------IPFFATF---D------------- 181 (367)
T ss_dssp CSHHHHHHHHHCCSSCEEEEECSCTTC---HHHHHHHHHHHHHTTT----------SCEEEEC---C-------------
T ss_pred CCHHHHHHHhccCCCcEEEEEECCCCc---hHHHHHHHHHHhhcCC----------cEEEEEC---C-------------
Confidence 1100010 0011236788899998865 5567788888888654 3444332 2
Q ss_pred cccccCCchhHHHHHhcCcCceeeEEEECC
Q 013684 303 LALPFGDPTIKELTKYFDVQGIPCLVIIGP 332 (438)
Q Consensus 303 ~~~p~~~d~~~~l~~~~~v~~~P~~~lid~ 332 (438)
..+++.|++.. |+++++.+
T Consensus 182 ----------~~~~~~~~v~~-p~i~lf~~ 200 (367)
T 3us3_A 182 ----------SKVAKKLTLKL-NEIDFYEA 200 (367)
T ss_dssp ----------HHHHHHHTCCT-TCEEEECT
T ss_pred ----------HHHHHHcCCCC-CeEEEEcC
Confidence 45788899986 99999965
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.7e-12 Score=102.92 Aligned_cols=72 Identities=24% Similarity=0.409 Sum_probs=62.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+++|+||++||++|+.+.|.|.++++++++ ++.++.|++|.+ .++++.|+
T Consensus 16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~---~v~~~~vd~~~~------------------------~~l~~~~~ 68 (112)
T 2voc_A 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD---KLKIVKIDVDEN------------------------QETAGKYG 68 (112)
T ss_dssp SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT---TCEEEEEETTTC------------------------CSHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CcEEEEEECCCC------------------------HHHHHHcC
Confidence 789999999999999999999999999999864 388888888754 45778899
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|.++|+++++ + +|+++.+.
T Consensus 69 v~~~Pt~~~~-~---~G~~~~~~ 87 (112)
T 2voc_A 69 VMSIPTLLVL-K---DGEVVETS 87 (112)
T ss_dssp CCSBSEEEEE-E---TTEEEEEE
T ss_pred CCcccEEEEE-e---CCEEEEEE
Confidence 9999999999 7 99887553
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-12 Score=111.14 Aligned_cols=85 Identities=19% Similarity=0.353 Sum_probs=69.3
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccC
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY 135 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~ 135 (438)
..+.+++.+.....++|+++|+||++||++|+.+.|.|.++++++++ ++.++.|+.|..
T Consensus 40 v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~---~~~~~~vd~~~~------------------ 98 (148)
T 3p2a_A 40 VINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG---KVRFVKVNTEAE------------------ 98 (148)
T ss_dssp CEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT---TCEEEEEETTTC------------------
T ss_pred ceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCC---ceEEEEEECcCC------------------
Confidence 44666665554445789999999999999999999999999999864 388888877644
Q ss_pred CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 136 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 136 ~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
..+++.|+|.++|++++++ +|+++.+
T Consensus 99 ------~~l~~~~~v~~~Pt~~~~~----~G~~~~~ 124 (148)
T 3p2a_A 99 ------PALSTRFRIRSIPTIMLYR----NGKMIDM 124 (148)
T ss_dssp ------HHHHHHTTCCSSSEEEEEE----TTEEEEE
T ss_pred ------HHHHHHCCCCccCEEEEEE----CCeEEEE
Confidence 6788999999999999995 8877654
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-12 Score=105.33 Aligned_cols=74 Identities=15% Similarity=0.261 Sum_probs=62.0
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
.+.++|+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.. ..+++
T Consensus 27 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~------------------------~~l~~ 78 (116)
T 3qfa_C 27 DAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS----NVIFLEVDVDDC------------------------QDVAS 78 (116)
T ss_dssp HHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCT----TSEEEEEETTTT------------------------HHHHH
T ss_pred HhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CCEEEEEECCCC------------------------HHHHH
Confidence 33478999999999999999999999999988873 377888877644 67889
Q ss_pred hcCcCccceEEEecCCCCCCCccccc
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.|+|.++|+++++ + +|+++.+.
T Consensus 79 ~~~v~~~Pt~~~~-~---~G~~~~~~ 100 (116)
T 3qfa_C 79 ECEVKSMPTFQFF-K---KGQKVGEF 100 (116)
T ss_dssp HTTCCSSSEEEEE-S---SSSEEEEE
T ss_pred HcCCccccEEEEE-e---CCeEEEEE
Confidence 9999999999999 5 88877553
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.28 E-value=6.7e-12 Score=104.43 Aligned_cols=80 Identities=9% Similarity=0.113 Sum_probs=63.5
Q ss_pred CCCCCEEecccc-CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcC--CCCEEEEEEecCCCHHHHHHhHhcCCccccc
Q 013684 58 KEIGEEVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN--GSDFEVVFVSSDEDLNAFNNYRACMPWLAVP 134 (438)
Q Consensus 58 ~~~g~~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~--~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~ 134 (438)
.++++.+..... .+++++|+|||+||++|+.+.|.|.++++++... ..++.++.|+.|..
T Consensus 19 ~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~----------------- 81 (127)
T 3h79_A 19 ELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKY----------------- 81 (127)
T ss_dssp ECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTC-----------------
T ss_pred ECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcccc-----------------
Confidence 555555543332 4799999999999999999999999999988632 23577777776643
Q ss_pred CCChHHHHHHhhhcCcCccceEEEecC
Q 013684 135 YSDLETKKALNRKFDIEGIPCLVVLQP 161 (438)
Q Consensus 135 ~~d~~~~~~l~~~~~v~~~P~~~lvd~ 161 (438)
..+++.|+|.++|++++++.
T Consensus 82 -------~~l~~~~~v~~~Pt~~~~~~ 101 (127)
T 3h79_A 82 -------PDVIERMRVSGFPTMRYYTR 101 (127)
T ss_dssp -------HHHHHHTTCCSSSEEEEECS
T ss_pred -------HhHHHhcCCccCCEEEEEeC
Confidence 67899999999999999986
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=113.97 Aligned_cols=70 Identities=16% Similarity=0.368 Sum_probs=60.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+|||+||++|+.+.|.+.++++++++. ..++.++.|+++.+. ...
T Consensus 29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~-------~~~v~~~~vd~~~~~---------------------~~~ 80 (244)
T 3q6o_A 29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAW-------RPALYLAALDCAEET---------------------NSA 80 (244)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGG-------TTTEEEEEEETTSTT---------------------THH
T ss_pred CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhc-------cCcEEEEEEeCCchh---------------------hHH
Confidence 3589999999999999999999999999999863 236999999986432 378
Q ss_pred HHHhcCcCceeeEEEECC
Q 013684 315 LTKYFDVQGIPCLVIIGP 332 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~ 332 (438)
+++.|+|.++||++++++
T Consensus 81 l~~~~~v~~~Pt~~~~~~ 98 (244)
T 3q6o_A 81 VCRDFNIPGFPTVRFFXA 98 (244)
T ss_dssp HHHHTTCCSSSEEEEECT
T ss_pred HHHHcCCCccCEEEEEeC
Confidence 999999999999999975
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-12 Score=107.45 Aligned_cols=83 Identities=22% Similarity=0.345 Sum_probs=65.9
Q ss_pred CCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCC
Q 013684 58 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD 137 (438)
Q Consensus 58 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d 137 (438)
+++++.+......+|+++|+||++||++|+.+.|.|.++++++++.+.++.++.|+.+..
T Consensus 21 ~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-------------------- 80 (140)
T 2dj1_A 21 VLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA-------------------- 80 (140)
T ss_dssp ECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTC--------------------
T ss_pred EcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCccc--------------------
Confidence 445554443333589999999999999999999999999999988654577776665533
Q ss_pred hHHHHHHhhhcCcCccceEEEecCCCCCCCc
Q 013684 138 LETKKALNRKFDIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 138 ~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v 168 (438)
..+++.|+|.++|+++++ + +|++
T Consensus 81 ----~~~~~~~~v~~~Pt~~~~-~---~G~~ 103 (140)
T 2dj1_A 81 ----SMLASKFDVSGYPTIKIL-K---KGQA 103 (140)
T ss_dssp ----HHHHHHTTCCSSSEEEEE-E---TTEE
T ss_pred ----HHHHHHCCCCccCeEEEE-E---CCcE
Confidence 678899999999999999 5 7773
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-12 Score=104.35 Aligned_cols=71 Identities=17% Similarity=0.362 Sum_probs=60.6
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++|+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.. ..+++.|+
T Consensus 23 ~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~----~~~~~~vd~~~~------------------------~~l~~~~~ 74 (109)
T 3f3q_A 23 QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP----QADFYKLDVDEL------------------------GDVAQKNE 74 (109)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC----CCEEEEEECCCC------------------------HHHHHHcC
Confidence 58999999999999999999999999999873 377888877644 67889999
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|.++|++++++ +|+++.+.
T Consensus 75 v~~~Pt~~~~~----~G~~~~~~ 93 (109)
T 3f3q_A 75 VSAMPTLLLFK----NGKEVAKV 93 (109)
T ss_dssp CCSSSEEEEEE----TTEEEEEE
T ss_pred CCccCEEEEEE----CCEEEEEE
Confidence 99999999997 78776553
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.6e-11 Score=119.46 Aligned_cols=85 Identities=12% Similarity=0.191 Sum_probs=65.7
Q ss_pred CCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCC---CCEEEEEEecCCCHHHHHHhHhcCCccccc
Q 013684 58 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNG---SDFEVVFVSSDEDLNAFNNYRACMPWLAVP 134 (438)
Q Consensus 58 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~---~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~ 134 (438)
+++++.+...--.+++++|+|||+||++|+.+.|.+.++++++++.. .++.++.|+.+..
T Consensus 9 ~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~----------------- 71 (382)
T 2r2j_A 9 SLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQH----------------- 71 (382)
T ss_dssp BCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTC-----------------
T ss_pred ECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCcc-----------------
Confidence 55555444322257899999999999999999999999999996431 2377777766533
Q ss_pred CCChHHHHHHhhhcCcCccceEEEecCCCCCCCccc
Q 013684 135 YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 135 ~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~ 170 (438)
..+++.|+|.++||++++. +|+++.
T Consensus 72 -------~~l~~~~~v~~~Pt~~~f~----~G~~~~ 96 (382)
T 2r2j_A 72 -------SDIAQRYRISKYPTLKLFR----NGMMMK 96 (382)
T ss_dssp -------HHHHHHTTCCEESEEEEEE----TTEEEE
T ss_pred -------HHHHHhcCCCcCCEEEEEe----CCcEee
Confidence 6889999999999999886 777654
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.7e-12 Score=101.62 Aligned_cols=70 Identities=11% Similarity=0.198 Sum_probs=53.3
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|+||++||++|+.+.|.|.++++++. ++.++.|++|.. ..+++.|+
T Consensus 17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~~~~------------------------~~l~~~~~ 68 (105)
T 4euy_A 17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN----YVEKIEILLQDM------------------------QEIAGRYA 68 (105)
T ss_dssp CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT----TEEEEEEEECCC--------------------------------
T ss_pred cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC----CceEEEEECCCC------------------------HHHHHhcC
Confidence 57999999999999999999999999999872 488888888755 56788999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|++++++ +|+++.+
T Consensus 69 v~~~Pt~~~~~----~G~~~~~ 86 (105)
T 4euy_A 69 VFTGPTVLLFY----NGKEILR 86 (105)
T ss_dssp -CCCCEEEEEE----TTEEEEE
T ss_pred CCCCCEEEEEe----CCeEEEE
Confidence 99999999995 8877654
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.1e-12 Score=109.16 Aligned_cols=69 Identities=23% Similarity=0.337 Sum_probs=59.3
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+|+|+|||+||++|+.+.|.|.++++++++. +.++.|++|.. .++++.|+
T Consensus 22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~---~~~~~vd~d~~------------------------~~l~~~~~ 74 (149)
T 3gix_A 22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM---AAIYLVDVDQT------------------------AVYTQYFD 74 (149)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT---EEEEEEETTTC------------------------CHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCcC------------------------HHHHHHcC
Confidence 5799999999999999999999999999887543 88888887654 56889999
Q ss_pred cCccceEEEecCCCCCCCcc
Q 013684 150 IEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~ 169 (438)
|.++|+++++ + +|+++
T Consensus 75 v~~~Pt~~~~-~---~G~~v 90 (149)
T 3gix_A 75 ISYIPSTVFF-F---NGQHM 90 (149)
T ss_dssp CCSSSEEEEE-E---TTEEE
T ss_pred CCccCeEEEE-E---CCeEE
Confidence 9999999954 5 88777
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=7e-12 Score=96.13 Aligned_cols=64 Identities=16% Similarity=0.335 Sum_probs=55.7
Q ss_pred CEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 013684 237 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 316 (438)
Q Consensus 237 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 316 (438)
.++++.||++|||+|+.+.|.+.++++++++ ++.++.|++|.+ .+++
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~~ 49 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD----------AVEVEYINVMEN-----------------------PQKA 49 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS----------SEEEEEEESSSS-----------------------CCTT
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC----------ceEEEEEECCCC-----------------------HHHH
Confidence 5789999999999999999999999888763 589999998754 4567
Q ss_pred HhcCcCceeeEEEECCCCcE
Q 013684 317 KYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 317 ~~~~v~~~P~~~lid~~G~i 336 (438)
+.||+.++|++++ +|++
T Consensus 50 ~~~~v~~~Pt~~~---~G~~ 66 (85)
T 1fo5_A 50 MEYGIMAVPTIVI---NGDV 66 (85)
T ss_dssp TSTTTCCSSEEEE---TTEE
T ss_pred HHCCCcccCEEEE---CCEE
Confidence 8899999999988 8887
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-12 Score=108.18 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=59.8
Q ss_pred EEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 013684 238 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 317 (438)
Q Consensus 238 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 317 (438)
+++|+||++||++|+.+.|.+.+++++++ +.++.|+++...+. ...+...++++
T Consensus 33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~------------v~~~~vd~~~~~~~--------------~~~d~~~~l~~ 86 (135)
T 3emx_A 33 DAILAVYSKTCPHCHRDWPQLIQASKEVD------------VPIVMFIWGSLIGE--------------RELSAARLEMN 86 (135)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHTTCC------------SCEEEEEECTTCCH--------------HHHHHHHHHHH
T ss_pred cEEEEEECCcCHhhhHhChhHHHHHHHCC------------CEEEEEECCCchhh--------------hhhhhhHHHHH
Confidence 89999999999999999999998887653 57888888643211 01123578899
Q ss_pred hcCcCceeeEEEECCCCcEEEc
Q 013684 318 YFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 318 ~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.|+|.++||+++++ +|+++.+
T Consensus 87 ~~~v~~~Pt~~~~~-~G~~v~~ 107 (135)
T 3emx_A 87 KAGVEGTPTLVFYK-EGRIVDK 107 (135)
T ss_dssp HHTCCSSSEEEEEE-TTEEEEE
T ss_pred HcCCceeCeEEEEc-CCEEEEE
Confidence 99999999999885 9999887
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=104.49 Aligned_cols=70 Identities=20% Similarity=0.442 Sum_probs=61.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+++|+||++||++|+.+.|.|.++++++++ ++.++.|++|.. ..+++.|+
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~~------------------------~~l~~~~~ 89 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDG---QIVIYKVDTEKE------------------------QELAGAFG 89 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTT---TCEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC---CEEEEEEeCCCC------------------------HHHHHHcC
Confidence 478999999999999999999999999999864 388888877744 57889999
Q ss_pred cCccceEEEecCCCCCCCcc
Q 013684 150 IEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~ 169 (438)
|.++|+++++++ +|+++
T Consensus 90 v~~~Pt~~~~~~---~G~~~ 106 (136)
T 2l5l_A 90 IRSIPSILFIPM---EGKPE 106 (136)
T ss_dssp CCSSCEEEEECS---SSCCE
T ss_pred CCCCCEEEEECC---CCcEE
Confidence 999999999998 99876
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.9e-12 Score=101.34 Aligned_cols=73 Identities=22% Similarity=0.514 Sum_probs=59.9
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++|+++|+||++||++|+.+.|.|.+++++++..+ +.++.|+.|.. ..+++.|+
T Consensus 20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~vd~~~~------------------------~~~~~~~~ 73 (112)
T 3d6i_A 20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSN--VSFLSIDADEN------------------------SEISELFE 73 (112)
T ss_dssp TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTT--SEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCC--EEEEEEecccC------------------------HHHHHHcC
Confidence 47999999999999999999999999998875543 88888887754 57889999
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.++|+++++ + +|+++.+.
T Consensus 74 v~~~Pt~~~~-~---~G~~~~~~ 92 (112)
T 3d6i_A 74 ISAVPYFIII-H---KGTILKEL 92 (112)
T ss_dssp CCSSSEEEEE-E---TTEEEEEE
T ss_pred CCcccEEEEE-E---CCEEEEEe
Confidence 9999999988 5 88877653
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-12 Score=104.68 Aligned_cols=72 Identities=22% Similarity=0.462 Sum_probs=59.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|+||++||++|+.+.|.+.++++++++. +.++.++.|+++.+ ..
T Consensus 23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-------~~~v~~~~vd~~~~-----------------------~~ 72 (120)
T 1mek_A 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAE-------GSEIRLAKVDATEE-----------------------SD 72 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTT-------CCCCBCEEEETTTC-----------------------CS
T ss_pred cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhcc-------CCcEEEEEEcCCCC-----------------------HH
Confidence 5799999999999999999999999999888754 23567777776643 46
Q ss_pred HHHhcCcCceeeEEEECCCCcEE
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
+++.|+|.++|+++++ ++|+++
T Consensus 73 ~~~~~~v~~~Pt~~~~-~~g~~~ 94 (120)
T 1mek_A 73 LAQQYGVRGYPTIKFF-RNGDTA 94 (120)
T ss_dssp SHHHHTCCSSSEEEEE-ESSCSS
T ss_pred HHHHCCCCcccEEEEE-eCCCcC
Confidence 7889999999999999 788754
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=103.62 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=56.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+|++++|+||++||++|+.+.|.|.++++++. ++.++.|+++..
T Consensus 29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-----------~v~~~~vd~~~~------------------------- 72 (135)
T 2dbc_A 29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-----------ETKFVKAIVNSC------------------------- 72 (135)
T ss_dssp SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-----------SEEEEEECCSSS-------------------------
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-----------CcEEEEEEhhcC-------------------------
Confidence 35899999999999999999999999988763 477777777643
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+.|+|.++||++++ ++|+++.+
T Consensus 73 -~~~~~i~~~Pt~~~~-~~G~~v~~ 95 (135)
T 2dbc_A 73 -IEHYHDNCLPTIFVY-KNGQIEGK 95 (135)
T ss_dssp -CSSCCSSCCSEEEEE-SSSSCSEE
T ss_pred -cccCCCCCCCEEEEE-ECCEEEEE
Confidence 157999999999999 59988776
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=7.1e-12 Score=96.11 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=54.6
Q ss_pred EEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 013684 238 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 317 (438)
Q Consensus 238 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 317 (438)
++++.||++||++|+.+.|.+.++++++++ ++.++.|++|.+ .++++
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~~~ 49 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD----------KIDVEKIDIMVD-----------------------REKAI 49 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCS----------SCCEEEECTTTC-----------------------GGGGG
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcC----------CeEEEEEECCCC-----------------------HHHHH
Confidence 468999999999999999999999988864 478888888755 46788
Q ss_pred hcCcCceeeEEEECCCCcE
Q 013684 318 YFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 318 ~~~v~~~P~~~lid~~G~i 336 (438)
.||+.++|++++ +|++
T Consensus 50 ~~~v~~~Pt~~~---~G~~ 65 (85)
T 1nho_A 50 EYGLMAVPAIAI---NGVV 65 (85)
T ss_dssp GTCSSCSSEEEE---TTTE
T ss_pred hCCceeeCEEEE---CCEE
Confidence 999999999988 8887
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-12 Score=113.98 Aligned_cols=104 Identities=12% Similarity=0.070 Sum_probs=65.6
Q ss_pred EeccccCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecCCCHHHHHH--hHhcCCcccccCCCh
Q 013684 64 VKVSDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNN--YRACMPWLAVPYSDL 138 (438)
Q Consensus 64 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~--~~~~~~~~~~~~~d~ 138 (438)
+.++..+||+|+|+|||+||++|+.+.+.+ .++.+.+++ ++.++.|++|+..+.... .........+.....
T Consensus 40 ~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~---~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (172)
T 3f9u_A 40 MEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN---DYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGD 116 (172)
T ss_dssp HHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH---HCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC---CEEEEEEecCcccccchhhhhhhcchhhhhhhhhh
Confidence 344556799999999999999999974444 455555544 389999998865421000 000111111111011
Q ss_pred HHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 139 ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 139 ~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.......+.|+|.++|++++||+ +|+++.+..
T Consensus 117 ~~~~~~~~~~~v~~~Pt~~lid~---~G~~~~~~~ 148 (172)
T 3f9u_A 117 KWSYLQRVKFGANAQPFYVLIDN---EGNPLNKSY 148 (172)
T ss_dssp HHHHHHHHHHSCCCSSEEEEECT---TSCBSSCCB
T ss_pred hhhHHHHHHcCCCCcceEEEECC---CCCEEeecc
Confidence 11122368899999999999999 999987643
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-12 Score=101.98 Aligned_cols=84 Identities=15% Similarity=0.235 Sum_probs=67.1
Q ss_pred CCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCC
Q 013684 58 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD 137 (438)
Q Consensus 58 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d 137 (438)
..+++.+.....++++++|+||++||++|+.+.|.|.++++++++ ++.++.|+.|..
T Consensus 8 ~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~~-------------------- 64 (109)
T 3tco_A 8 VLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG---KAVFGRLNVDEN-------------------- 64 (109)
T ss_dssp ECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTC--------------------
T ss_pred EecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC---CceEEEEccccC--------------------
Confidence 344444433333589999999999999999999999999999865 378888877644
Q ss_pred hHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 138 LETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 138 ~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..+++.|++.++|+++++ + +|+++.+.
T Consensus 65 ----~~~~~~~~i~~~Pt~~~~-~---~g~~~~~~ 91 (109)
T 3tco_A 65 ----QKIADKYSVLNIPTTLIF-V---NGQLVDSL 91 (109)
T ss_dssp ----HHHHHHTTCCSSSEEEEE-E---TTEEEEEE
T ss_pred ----HHHHHhcCcccCCEEEEE-c---CCcEEEee
Confidence 678899999999999999 6 89877653
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.25 E-value=9.7e-12 Score=99.41 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=61.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+++|+||++||++|+.+.|.|.++++++++ ++.++.|+.|.+ .++++.|+
T Consensus 16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~v~~~~v~~~~~------------------------~~~~~~~~ 68 (105)
T 1nsw_A 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD---KVTVAKLNVDEN------------------------PETTSQFG 68 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT---TCEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEECcCC------------------------HHHHHHcC
Confidence 578999999999999999999999999998754 388888887754 57888999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.++|+++++ + +|+++.+
T Consensus 69 v~~~Pt~~~~-~---~G~~~~~ 86 (105)
T 1nsw_A 69 IMSIPTLILF-K---GGRPVKQ 86 (105)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CccccEEEEE-e---CCeEEEE
Confidence 9999999999 6 8887654
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=98.68 Aligned_cols=71 Identities=21% Similarity=0.382 Sum_probs=62.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|+||++||++|+.+.|.+.+++++++++ +.++.|+.|.. ..+++.|+
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~ 70 (106)
T 3die_A 18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLDVDEN------------------------PSTAAKYE 70 (106)
T ss_dssp CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEECCcC------------------------HHHHHhCC
Confidence 7899999999999999999999999999998653 88888887754 57889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.++|++++++ +|+++.+
T Consensus 71 v~~~Pt~~~~~----~G~~~~~ 88 (106)
T 3die_A 71 VMSIPTLIVFK----DGQPVDK 88 (106)
T ss_dssp CCSBSEEEEEE----TTEEEEE
T ss_pred CcccCEEEEEe----CCeEEEE
Confidence 99999999995 8877654
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-12 Score=107.40 Aligned_cols=71 Identities=18% Similarity=0.346 Sum_probs=62.5
Q ss_pred CEEEEEEeccCC--ccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 72 KVTALYFSANWY--PPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 72 k~vll~F~a~wC--~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++|+|+|||+|| ++|+.+.|.|.++.+++.++ +.++.|++|.. .+++.+|+
T Consensus 34 ~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~---v~~~KVdvDe~------------------------~~la~~yg 86 (137)
T 2qsi_A 34 KIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR---LVAAEVAAEAE------------------------RGLMARFG 86 (137)
T ss_dssp SEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT---EEEEEECGGGH------------------------HHHHHHHT
T ss_pred CcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC---cEEEEEECCCC------------------------HHHHHHcC
Confidence 499999999999 99999999999999998653 88888876643 78999999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.++||++++. +|+.+.+..
T Consensus 87 V~siPTlilFk----dG~~v~~~v 106 (137)
T 2qsi_A 87 VAVCPSLAVVQ----PERTLGVIA 106 (137)
T ss_dssp CCSSSEEEEEE----CCEEEEEEE
T ss_pred CccCCEEEEEE----CCEEEEEEe
Confidence 99999999997 898887754
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-11 Score=101.89 Aligned_cols=70 Identities=17% Similarity=0.378 Sum_probs=60.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+++|+||++||++|+.+.|.|.++++++++. +.++.|+.|.. ..+++.|+
T Consensus 34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~------------------------~~l~~~~~ 86 (130)
T 2dml_A 34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV---VKVGAVNADKH------------------------QSLGGQYG 86 (130)
T ss_dssp CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT---SEEEEEETTTC------------------------HHHHHHHT
T ss_pred CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc---eEEEEEeCCCC------------------------HHHHHHcC
Confidence 4789999999999999999999999999998642 77888877643 67889999
Q ss_pred cCccceEEEecCCCCCCCcc
Q 013684 150 IEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~ 169 (438)
|.++|+++++++ +|.++
T Consensus 87 v~~~Pt~~~~~~---~~~~~ 103 (130)
T 2dml_A 87 VQGFPTIKIFGA---NKNKP 103 (130)
T ss_dssp CCSSSEEEEESS---CTTSC
T ss_pred CCccCEEEEEeC---CCCeE
Confidence 999999999997 77633
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.6e-12 Score=105.63 Aligned_cols=81 Identities=16% Similarity=0.353 Sum_probs=63.9
Q ss_pred EeccccCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHH
Q 013684 64 VKVSDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLET 140 (438)
Q Consensus 64 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~ 140 (438)
+.+++.+||+++|+||++||++|+.+.|.+ .++.+.++.. +.++.|+.|.+..
T Consensus 20 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~--------------------- 75 (130)
T 2kuc_A 20 LKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH---FVNLKMDMEKGEG--------------------- 75 (130)
T ss_dssp HHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH---SEEEEECSSSTTH---------------------
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC---eEEEEEecCCcch---------------------
Confidence 444556789999999999999999999998 6666665432 6666666654222
Q ss_pred HHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 141 KKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 141 ~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..+++.|+|.++|+++++|+ +|+++.+.
T Consensus 76 -~~~~~~~~v~~~Pt~~~~d~---~G~~~~~~ 103 (130)
T 2kuc_A 76 -VELRKKYGVHAYPTLLFINS---SGEVVYRL 103 (130)
T ss_dssp -HHHHHHTTCCSSCEEEEECT---TSCEEEEE
T ss_pred -HHHHHHcCCCCCCEEEEECC---CCcEEEEe
Confidence 68899999999999999998 99887653
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=102.96 Aligned_cols=78 Identities=22% Similarity=0.451 Sum_probs=61.5
Q ss_pred CCCEEEEEEecC-------CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 235 VGKTVGLYFSAR-------WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 235 ~gk~vll~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
.|++++|+||++ ||++|+.+.|.+.++++++++ ++.++.|+++.. ..|.
T Consensus 23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~----------~~~~~~vd~~~~-~~~~------------- 78 (123)
T 1wou_A 23 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE----------GCVFIYCQVGEK-PYWK------------- 78 (123)
T ss_dssp TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT----------TEEEEEEECCCH-HHHH-------------
T ss_pred CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC----------CcEEEEEECCCc-hhhh-------------
Confidence 589999999999 999999999999998887653 588999988632 1110
Q ss_pred CCchhHHHHHhcCcCceeeEEEECCCCcEEE
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
+....+++.|+|.++||+++++..+++..
T Consensus 79 --d~~~~~~~~~~i~~~Pt~~~~~~~~~~~g 107 (123)
T 1wou_A 79 --DPNNDFRKNLKVTAVPTLLKYGTPQKLVE 107 (123)
T ss_dssp --CTTCHHHHHHCCCSSSEEEETTSSCEEEG
T ss_pred --chhHHHHHHCCCCeeCEEEEEcCCceEec
Confidence 22367888999999999999977555553
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=99.74 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=60.2
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
.+.+||+++|+||++||++|+.+.|.|.+++++++ ++.++.|+.+.. ...+++
T Consensus 20 ~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~-----------------------~~~~~~ 72 (111)
T 2pu9_C 20 KAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL----DVIFLKLDCNQE-----------------------NKTLAK 72 (111)
T ss_dssp TTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSST-----------------------THHHHH
T ss_pred HhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC----CeEEEEEecCcc-----------------------hHHHHH
Confidence 33468999999999999999999999999998874 377888877621 167889
Q ss_pred hcCcCccceEEEecCCCCCCCccccc
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.|++.++|+++ +.+ +|+++.+.
T Consensus 73 ~~~v~~~Pt~~-~~~---~G~~~~~~ 94 (111)
T 2pu9_C 73 ELGIRVVPTFK-ILK---ENSVVGEV 94 (111)
T ss_dssp HHCCSBSSEEE-EES---SSSEEEEE
T ss_pred HcCCCeeeEEE-EEe---CCcEEEEE
Confidence 99999999954 556 89887543
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-11 Score=99.58 Aligned_cols=71 Identities=24% Similarity=0.409 Sum_probs=61.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+++|+||++||++|+.+.|.|.++++++++ ++.++.|+.|.+ ..+++.|+
T Consensus 22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~~------------------------~~~~~~~~ 74 (112)
T 1t00_A 22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD---KIEIVKLNIDEN------------------------PGTAAKYG 74 (112)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TCEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC---CeEEEEEEcCCC------------------------HHHHHhCC
Confidence 478999999999999999999999999998854 388888887754 57888999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.++|+++++ + +|+++.+
T Consensus 75 v~~~Pt~~~~-~---~G~~~~~ 92 (112)
T 1t00_A 75 VMSIPTLNVY-Q---GGEVAKT 92 (112)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCcccEEEEE-e---CCEEEEE
Confidence 9999998888 5 8887654
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-11 Score=98.95 Aligned_cols=71 Identities=21% Similarity=0.466 Sum_probs=61.1
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+++|+||++||++|+.+.|.|.++++++++ ++.++.|+.|.. ..+++.|+
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~~------------------------~~~~~~~~ 71 (108)
T 2trx_A 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQN------------------------PGTAPKYG 71 (108)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TEEEEEEETTTC------------------------TTHHHHTT
T ss_pred cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC---CcEEEEEECCCC------------------------HHHHHHcC
Confidence 579999999999999999999999999998864 388888887754 45778899
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.++|+++++ + +|+++.+
T Consensus 72 v~~~Pt~~~~-~---~G~~~~~ 89 (108)
T 2trx_A 72 IRGIPTLLLF-K---NGEVAAT 89 (108)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CcccCEEEEE-e---CCEEEEE
Confidence 9999999999 6 8987754
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=101.50 Aligned_cols=71 Identities=20% Similarity=0.398 Sum_probs=60.9
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++|+++|+||++||++|+.+.|.|.+++++++ ++.++.|+.|.. .++++.|+
T Consensus 37 ~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~v~~~~vd~d~~------------------------~~l~~~~~ 88 (124)
T 1xfl_A 37 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP----NVLFLKVDTDEL------------------------KSVASDWA 88 (124)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTS------------------------HHHHHHTT
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CcEEEEEECccC------------------------HHHHHHcC
Confidence 58999999999999999999999999998874 388888877643 67889999
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|.++|+++++ + +|+++.+.
T Consensus 89 v~~~Pt~~~~-~---~G~~~~~~ 107 (124)
T 1xfl_A 89 IQAMPTFMFL-K---EGKILDKV 107 (124)
T ss_dssp CCSSSEEEEE-E---TTEEEEEE
T ss_pred CCccCEEEEE-E---CCEEEEEE
Confidence 9999998888 5 89887553
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-11 Score=97.70 Aligned_cols=71 Identities=20% Similarity=0.402 Sum_probs=60.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+++|+||++||++|+.+.|.|.++++++++ ++.++.|+.|.+ .++++.|+
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~~------------------------~~~~~~~~ 70 (107)
T 1dby_A 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD---KLKCVKLNTDES------------------------PNVASEYG 70 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TCEEEEEETTTC------------------------HHHHHHHT
T ss_pred CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCC---ceEEEEEECCCC------------------------HHHHHHCC
Confidence 478999999999999999999999999998864 388888877754 57888999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.++|+++++ + +|+++.+
T Consensus 71 v~~~Pt~~~~-~---~G~~~~~ 88 (107)
T 1dby_A 71 IRSIPTIMVF-K---GGKKCET 88 (107)
T ss_dssp CCSSCEEEEE-S---SSSEEEE
T ss_pred CCcCCEEEEE-e---CCEEEEE
Confidence 9999998888 5 8887654
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=98.45 Aligned_cols=70 Identities=9% Similarity=0.130 Sum_probs=60.2
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++|+++|+||++||++|+.+.|.|.++++++. ++.++.|+.|.. ..+++.|+
T Consensus 20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~vd~~~~------------------------~~~~~~~~ 71 (107)
T 1gh2_A 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP----QAVFLEVDVHQC------------------------QGTAATNN 71 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTS------------------------HHHHHHTT
T ss_pred CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC----CcEEEEEECccC------------------------HHHHHhcC
Confidence 57999999999999999999999999999872 388888877744 56888999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.++|+++++ + +|+++.+
T Consensus 72 v~~~Pt~~~~-~---~G~~~~~ 89 (107)
T 1gh2_A 72 ISATPTFQFF-R---NKVRIDQ 89 (107)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCcccEEEEE-E---CCeEEEE
Confidence 9999999999 5 8877654
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-11 Score=100.56 Aligned_cols=71 Identities=15% Similarity=0.350 Sum_probs=61.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+++|+||++||++|+.+.|.|.++++++++ ++.++.|++|.. ..+++.|+
T Consensus 30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~---~v~~~~vd~d~~------------------------~~l~~~~~ 82 (119)
T 1w4v_A 30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG---KVVMAKVDIDDH------------------------TDLAIEYE 82 (119)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---SSEEEEEETTTT------------------------HHHHHHTT
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEeCCCC------------------------HHHHHHcC
Confidence 478999999999999999999999999998754 388888877643 57889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|+++++ + +|+++.+
T Consensus 83 v~~~Pt~~~~-~---~G~~~~~ 100 (119)
T 1w4v_A 83 VSAVPTVLAM-K---NGDVVDK 100 (119)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCcccEEEEE-e---CCcEEEE
Confidence 9999999999 6 8987754
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=103.26 Aligned_cols=71 Identities=20% Similarity=0.414 Sum_probs=61.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++||++|+.+.|.|.++++++++ ++.++.|++|.. .++++.|+
T Consensus 39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~~~~------------------------~~l~~~~~ 91 (128)
T 2o8v_B 39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQG---KLTVAKLNIDQN------------------------PGTAPKYG 91 (128)
T ss_dssp CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT---TEEEEEEETTTC------------------------CTTSGGGT
T ss_pred cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CeEEEEEECCCC------------------------HHHHHHcC
Confidence 579999999999999999999999999998864 388888887754 35678899
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|+++++ + +|+++.+
T Consensus 92 v~~~Pt~~~~-~---~G~~~~~ 109 (128)
T 2o8v_B 92 IRGIPTLLLF-K---NGEVAAT 109 (128)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCccCEEEEE-e---CCEEEEE
Confidence 9999999999 6 9987754
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-11 Score=102.50 Aligned_cols=75 Identities=15% Similarity=0.310 Sum_probs=61.4
Q ss_pred ccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhh
Q 013684 68 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 147 (438)
Q Consensus 68 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 147 (438)
.-++++++|+|||+||++|+.+.|.|.++++++++. ++.++.|++|.. ..+++.
T Consensus 23 ~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~~~~------------------------~~~~~~ 76 (137)
T 2dj0_A 23 RDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCT--GLNFGKVDVGRY------------------------TDVSTR 76 (137)
T ss_dssp HSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSS--SCEEEECCTTTC------------------------HHHHHH
T ss_pred cCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--CeEEEEEeCccC------------------------HHHHHH
Confidence 335679999999999999999999999999999753 377777766543 567888
Q ss_pred cCcC------ccceEEEecCCCCCCCccccc
Q 013684 148 FDIE------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 148 ~~v~------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|+|. ++|+++++. +|+++.+.
T Consensus 77 ~~v~~~~~~~~~Pt~~~~~----~G~~~~~~ 103 (137)
T 2dj0_A 77 YKVSTSPLTKQLPTLILFQ----GGKEAMRR 103 (137)
T ss_dssp TTCCCCSSSSCSSEEEEES----SSSEEEEE
T ss_pred ccCcccCCcCCCCEEEEEE----CCEEEEEe
Confidence 9998 999999994 88877543
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-11 Score=98.28 Aligned_cols=71 Identities=24% Similarity=0.462 Sum_probs=61.2
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++||++|+.+.|.+.++++++++ ++.++.|++|.. ..+++.|+
T Consensus 21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~------------------------~~l~~~~~ 73 (111)
T 3gnj_A 21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE---SFGFYYVDVEEE------------------------KTLFQRFS 73 (111)
T ss_dssp SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCC---ceEEEEEECCcC------------------------hhHHHhcC
Confidence 578999999999999999999999999999864 388888887754 67889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|+++++. +|+.+.+
T Consensus 74 v~~~Pt~~~~~----~g~~~~~ 91 (111)
T 3gnj_A 74 LKGVPQILYFK----DGEYKGK 91 (111)
T ss_dssp CCSSCEEEEEE----TTEEEEE
T ss_pred CCcCCEEEEEE----CCEEEEE
Confidence 99999999994 8877644
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-11 Score=96.57 Aligned_cols=71 Identities=18% Similarity=0.366 Sum_probs=61.9
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++||++|+.+.|.|.++++++++ ++.++.|+.|.. ..+++.|+
T Consensus 19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~~------------------------~~~~~~~~ 71 (107)
T 2i4a_A 19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG---KVTVAKVNIDDN------------------------PETPNAYQ 71 (107)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT---SEEEEEEETTTC------------------------CHHHHHTT
T ss_pred CCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC---cEEEEEEECCCC------------------------HHHHHhcC
Confidence 579999999999999999999999999999864 388888887754 46788999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.++|+++++ + +|+++.+
T Consensus 72 v~~~Pt~~~~-~---~G~~~~~ 89 (107)
T 2i4a_A 72 VRSIPTLMLV-R---DGKVIDK 89 (107)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCccCEEEEE-e---CCEEEEE
Confidence 9999999999 6 9987754
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.5e-11 Score=101.94 Aligned_cols=71 Identities=11% Similarity=0.170 Sum_probs=61.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.. ..+++.|+
T Consensus 23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~ 75 (140)
T 3hz4_A 23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS---AVFGRINIATN------------------------PWTAEKYG 75 (140)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTC------------------------HHHHHHHT
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCcC------------------------HhHHHHCC
Confidence 4799999999999999999999999999998653 88888877654 67889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|+++++ + +|+++.+
T Consensus 76 v~~~Pt~~~~-~---~G~~~~~ 93 (140)
T 3hz4_A 76 VQGTPTFKFF-C---HGRPVWE 93 (140)
T ss_dssp CCEESEEEEE-E---TTEEEEE
T ss_pred CCcCCEEEEE-e---CCcEEEE
Confidence 9999999998 5 8877654
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-12 Score=108.65 Aligned_cols=81 Identities=25% Similarity=0.455 Sum_probs=65.6
Q ss_pred CCEEeccccCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCC
Q 013684 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD 137 (438)
Q Consensus 61 g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d 137 (438)
.+.+.+...+||+++|+||++||++|+.+.|.+ .++.+.++. ++.++.|++|.+..
T Consensus 9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~------------------ 67 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA---RFVVASVSVDTPEG------------------ 67 (130)
Confidence 667788888999999999999999999999999 888877654 37777776653321
Q ss_pred hHHHHHHhhhcCcCccceEEEecCCCCCCCc
Q 013684 138 LETKKALNRKFDIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 138 ~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v 168 (438)
..+++.|+|.++|+++++|+ .+|++
T Consensus 68 ----~~~~~~~~v~~~Pt~~~~d~--~~G~~ 92 (130)
T 2lst_A 68 ----QELARRYRVPGTPTFVFLVP--KAGAW 92 (130)
Confidence 67889999999999999985 15776
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-11 Score=98.06 Aligned_cols=83 Identities=18% Similarity=0.342 Sum_probs=66.7
Q ss_pred CCCCCEEeccc-cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCC
Q 013684 58 KEIGEEVKVSD-LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYS 136 (438)
Q Consensus 58 ~~~g~~v~l~~-~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~ 136 (438)
+.+++.+.... -.+++++|+||++||++|+.+.|.|.++++++++ ++.++.|+.|..
T Consensus 11 ~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~v~~~~v~~~~~------------------- 68 (115)
T 1thx_A 11 TITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD---RLKVVKLEIDPN------------------- 68 (115)
T ss_dssp ECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT---TCEEEEEESTTC-------------------
T ss_pred EeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCC---cEEEEEEEcCCC-------------------
Confidence 44444443222 2579999999999999999999999999998864 388888887754
Q ss_pred ChHHHHHHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 137 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 137 d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
..+++.|++.++|+++++ + +|+++.+
T Consensus 69 -----~~~~~~~~v~~~Pt~~~~-~---~G~~~~~ 94 (115)
T 1thx_A 69 -----PTTVKKYKVEGVPALRLV-K---GEQILDS 94 (115)
T ss_dssp -----HHHHHHTTCCSSSEEEEE-E---TTEEEEE
T ss_pred -----HHHHHHcCCCceeEEEEE-c---CCEEEEE
Confidence 578899999999999999 7 9988754
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-11 Score=97.38 Aligned_cols=73 Identities=16% Similarity=0.327 Sum_probs=61.4
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
++.++|+++|+||++||++|+.+.|.+.+++++++ ++.++.|+.|.. ..+++
T Consensus 16 ~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~vd~~~~------------------------~~~~~ 67 (105)
T 3m9j_A 16 DAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS----NVIFLEVDVDDC------------------------QDVAS 67 (105)
T ss_dssp HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHST----TSEEEEEETTTC------------------------HHHHH
T ss_pred HhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHcc----CeEEEEEEhhhh------------------------HHHHH
Confidence 33468999999999999999999999999998873 377888877644 67889
Q ss_pred hcCcCccceEEEecCCCCCCCcccc
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
.|++.++|+++++ + +|+.+.+
T Consensus 68 ~~~v~~~Pt~~~~-~---~g~~~~~ 88 (105)
T 3m9j_A 68 ESEVKSMPTFQFF-K---KGQKVGE 88 (105)
T ss_dssp HTTCCBSSEEEEE-E---TTEEEEE
T ss_pred HcCCCcCcEEEEE-E---CCeEEEE
Confidence 9999999999999 4 7877654
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-12 Score=103.66 Aligned_cols=71 Identities=25% Similarity=0.535 Sum_probs=60.8
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++.++++++ +.++.|++|.+ ..
T Consensus 18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~-----------------------~~ 64 (106)
T 2yj7_A 18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK----------VKVVKVNVDEN-----------------------PN 64 (106)
Confidence 4789999999999999999999999999888643 67777776643 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|++.++|+++++ ++|+++.+
T Consensus 65 ~~~~~~v~~~Pt~~~~-~~g~~~~~ 88 (106)
T 2yj7_A 65 TAAQYGIRSIPTLLLF-KNGQVVDR 88 (106)
Confidence 7889999999999999 89988765
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-11 Score=108.07 Aligned_cols=119 Identities=9% Similarity=0.228 Sum_probs=91.2
Q ss_pred HhhccchhHHHHHhhcccccCCCC-CEEeccc-cCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEE-EEEEe
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIG-EEVKVSD-LEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFE-VVFVS 113 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g-~~v~l~~-~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~-iv~vs 113 (438)
.+|+.+|+|+ +.+..+ +.++|++ ++||+++|+|| ..|||.|..+++.+++.+++|++.| ++ |++||
T Consensus 15 ~vGd~aPdf~--------l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~g--v~~VigIS 84 (171)
T 2xhf_A 15 KVGDIIPDVL--------VYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEG--YHTIACIA 84 (171)
T ss_dssp CTTCBCCCCE--------EECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTT--CCEEEEEE
T ss_pred cCcCCCCCeE--------EecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CCEEEEEe
Confidence 4799999999 764332 8999999 49999988888 7899999999999999999999987 85 99999
Q ss_pred cCCCHHHHHHhHhcCCc--ccccCCChHHHHHHhhhcCcC-----------ccceEEEecCCCCCCCcccccc
Q 013684 114 SDEDLNAFNNYRACMPW--LAVPYSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~~~~~~~~~~~~~--~~~~~~d~~~~~~l~~~~~v~-----------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.| +....++|.++.+. .....+|.+ .++++.||+. ....++||| +|+|++...
T Consensus 85 ~D-~~~~~~~w~~~~~~~~~f~lLSD~~--~~~a~ayGv~~~~~~~g~g~~~~R~tfvId----dG~V~~~~v 150 (171)
T 2xhf_A 85 VN-DPFVMAAWGKTVDPEHKIRMLADMH--GEFTRALGTELDSSKMLGNNRSRRYAMLID----DNKIRSVST 150 (171)
T ss_dssp SS-CHHHHHHHHHHHCTTCCSEEEECTT--SHHHHHHTCBCCCHHHHSSCCBCCEEEEEE----TTEEEEEEE
T ss_pred CC-CHHHHHHHHHhcCCCCCeEEEEeCC--chHHHHhCCceeccccCCCcceEEEEEEEe----CCEEEEEEE
Confidence 99 44555666654443 122233544 7889999873 346788886 898887654
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-11 Score=121.27 Aligned_cols=89 Identities=17% Similarity=0.305 Sum_probs=69.8
Q ss_pred CCCCCceeecccc-CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC
Q 013684 222 GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 300 (438)
Q Consensus 222 ~~~g~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 300 (438)
..+++ .+...-. .+++++|+|||+||++|+.+.|.+.++++++++. ..++.|+.|+++.+.
T Consensus 16 ~Lt~~-~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~-------~~~v~~~~VD~d~d~---------- 77 (519)
T 3t58_A 16 LLDAD-SVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDW-------RPALNLAVLDCAEET---------- 77 (519)
T ss_dssp EECTT-THHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGG-------TTTEEEEEEETTSGG----------
T ss_pred ECChH-HHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCc-------CCcEEEEEEECCccc----------
Confidence 44555 4433222 3689999999999999999999999999999863 236899999987532
Q ss_pred CCcccccCCchhHHHHHhcCcCceeeEEEECC---CCcEEEc
Q 013684 301 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGP---EGKTVTK 339 (438)
Q Consensus 301 ~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~---~G~i~~~ 339 (438)
..++++.|+|.++||++++++ +|+.+..
T Consensus 78 -----------~~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~ 108 (519)
T 3t58_A 78 -----------NSAVCREFNIAGFPTVRFFQAFTKNGSGATL 108 (519)
T ss_dssp -----------GHHHHHHTTCCSBSEEEEECTTCCSCCCEEE
T ss_pred -----------cHHHHHHcCCcccCEEEEEcCcccCCCceeE
Confidence 478999999999999999986 6654443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-11 Score=115.50 Aligned_cols=71 Identities=14% Similarity=0.301 Sum_probs=62.1
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+||+|+|+||++||++|+.+.|.|.++++++++ ++.++.|++|.. ..+++.|+
T Consensus 25 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~ 77 (287)
T 3qou_A 25 MTTPVLFYFWSERSQHCLQLTPILESLAAQYNG---QFILAKLDCDAE------------------------QMIAAQFG 77 (287)
T ss_dssp TTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTS---SSEEEEEETTTC------------------------HHHHHTTT
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHcCC---CeEEEEEeCccC------------------------HHHHHHcC
Confidence 489999999999999999999999999999975 388888887754 67889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++||++++ + +|+++.+
T Consensus 78 v~~~Pt~~~~-~---~G~~~~~ 95 (287)
T 3qou_A 78 LRAIPTVYLF-Q---NGQPVDG 95 (287)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCCCCeEEEE-E---CCEEEEE
Confidence 9999999999 4 8877653
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.7e-12 Score=104.58 Aligned_cols=75 Identities=16% Similarity=0.313 Sum_probs=57.8
Q ss_pred eccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHH
Q 013684 65 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 144 (438)
Q Consensus 65 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 144 (438)
.+++.+||+++|+||++||++|+.+.|.|.++++++ ++.++.|+.|.. ..+
T Consensus 34 ~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-----~v~~~~vd~~~~------------------------~~l 84 (133)
T 3cxg_A 34 VFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-----YVTLVDIDVDIH------------------------PKL 84 (133)
T ss_dssp HHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-----ECEEEEEETTTC------------------------HHH
T ss_pred HHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-----CEEEEEEeccch------------------------HHH
Confidence 355667899999999999999999999998877654 256666655532 678
Q ss_pred hhhcCcCccceEEEe-cCCCCCCC--cccc
Q 013684 145 NRKFDIEGIPCLVVL-QPYDDKDD--ATLH 171 (438)
Q Consensus 145 ~~~~~v~~~P~~~lv-d~~~~~G~--v~~~ 171 (438)
++.|+|.++|+++++ ++ +|+ ++.+
T Consensus 85 ~~~~~v~~~Pt~~~~~~~---~g~g~~~~~ 111 (133)
T 3cxg_A 85 NDQHNIKALPTFEFYFNL---NNEWVLVHT 111 (133)
T ss_dssp HHHTTCCSSSEEEEEEEE---TTEEEEEEE
T ss_pred HHhcCCCCCCEEEEEEec---CCCeEEEEE
Confidence 899999999999999 44 554 5544
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.4e-11 Score=98.33 Aligned_cols=70 Identities=17% Similarity=0.346 Sum_probs=59.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+||+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.. .++++.|+
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~----~v~~~~vd~~~~------------------------~~l~~~~~ 80 (114)
T 2oe3_A 29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP----DVRFVKCDVDES------------------------PDIAKECE 80 (114)
T ss_dssp HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CCEEEEEECCCC------------------------HHHHHHCC
Confidence 57999999999999999999999999998874 277888877644 57889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.++|+++++ + +|+++.+
T Consensus 81 v~~~Pt~~~~-~---~G~~~~~ 98 (114)
T 2oe3_A 81 VTAMPTFVLG-K---DGQLIGK 98 (114)
T ss_dssp CCSBSEEEEE-E---TTEEEEE
T ss_pred CCcccEEEEE-e---CCeEEEE
Confidence 9999998887 5 8887654
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-12 Score=107.10 Aligned_cols=71 Identities=28% Similarity=0.536 Sum_probs=60.6
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
..|++++|+||++||++|+.+.|.|.++.++++ ++.++.|++|.. .
T Consensus 34 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----------~v~~~~v~~~~~-----------------------~ 79 (130)
T 1wmj_A 34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-----------GAVFLKVDVDEL-----------------------K 79 (130)
T ss_dssp TTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-----------TBCCEECCTTTS-----------------------G
T ss_pred hcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-----------CCEEEEEeccch-----------------------H
Confidence 358999999999999999999999999988764 367888877644 5
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+++.|+|.++|+++++ ++|+++.+
T Consensus 80 ~~~~~~~v~~~Pt~~~~-~~g~~~~~ 104 (130)
T 1wmj_A 80 EVAEKYNVEAMPTFLFI-KDGAEADK 104 (130)
T ss_dssp GGHHHHTCCSSCCCCBC-TTTTCCBC
T ss_pred HHHHHcCCCccceEEEE-eCCeEEEE
Confidence 68899999999998888 89998766
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5e-12 Score=103.03 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=55.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+...+||+|||+||++|+.+.+.+...++..... ..+.++.|+++.+. ...
T Consensus 17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~--------~~~~l~~vdv~~~~---------------------~~~ 67 (116)
T 3dml_A 17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEG--------RAAPVQRLQMRDPL---------------------PPG 67 (116)
T ss_dssp --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHH--------HHSCEEEEETTSCC---------------------CTT
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhc--------ccceEEEEECCCCC---------------------chh
Confidence 4568999999999999999987655443321110 13578888888652 145
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++..|+|.++||+++++ +|+.+.+
T Consensus 68 la~~~~V~g~PT~i~f~-~G~ev~R 91 (116)
T 3dml_A 68 LELARPVTFTPTFVLMA-GDVESGR 91 (116)
T ss_dssp CBCSSCCCSSSEEEEEE-TTEEEEE
T ss_pred HHHHCCCCCCCEEEEEE-CCEEEee
Confidence 67889999999999996 9999987
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-11 Score=104.45 Aligned_cols=71 Identities=17% Similarity=0.360 Sum_probs=61.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++||++|+.+.|.|.+++++++++ +.++.|+.|.. ..+++.|+
T Consensus 63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~ 115 (155)
T 2ppt_A 63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKIDTQAH------------------------PAVAGRHR 115 (155)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTS------------------------THHHHHTT
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC---EEEEEEeCCcc------------------------HHHHHHcC
Confidence 5789999999999999999999999999998643 88888887744 56889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|+++++ + +|+++.+
T Consensus 116 i~~~Pt~~~~-~---~G~~~~~ 133 (155)
T 2ppt_A 116 IQGIPAFILF-H---KGRELAR 133 (155)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCcCCEEEEE-e---CCeEEEE
Confidence 9999999999 5 8887754
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.6e-11 Score=97.70 Aligned_cols=73 Identities=14% Similarity=0.315 Sum_probs=60.4
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|+||++||++|+.+.|.|.++++++.....++.++.|+.|.. ..+++.|+|
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~------------------------~~l~~~~~v 76 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE------------------------RNICSKYSV 76 (111)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTC------------------------HHHHHHTTC
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEecccc------------------------HhHHHhcCC
Confidence 78999999999999999999999999988765433578887776644 578899999
Q ss_pred CccceEEEecCCCCCCCcccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~ 171 (438)
.++|+++++. +|+++.+
T Consensus 77 ~~~Pt~~~~~----~g~~~~~ 93 (111)
T 3uvt_A 77 RGYPTLLLFR----GGKKVSE 93 (111)
T ss_dssp CSSSEEEEEE----TTEEEEE
T ss_pred CcccEEEEEe----CCcEEEe
Confidence 9999999984 7876544
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.3e-11 Score=99.17 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=59.6
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++||++|+.+.|.|.++++++++ ++.++.|++|.. ..+++.|+
T Consensus 20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~ 72 (122)
T 3aps_A 20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG---KVRAGKVDCQAY------------------------PQTCQKAG 72 (122)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT---TCEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEeCcCC------------------------HHHHHHcC
Confidence 478999999999999999999999999999865 388888877754 56888999
Q ss_pred cCccceEEEecCCCCCCCc
Q 013684 150 IEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v 168 (438)
|.++|++++++. +|.+
T Consensus 73 v~~~Pt~~~~~~---~~~~ 88 (122)
T 3aps_A 73 IKAYPSVKLYQY---ERAK 88 (122)
T ss_dssp CCSSSEEEEEEE---EGGG
T ss_pred CCccceEEEEeC---CCcc
Confidence 999999999986 6653
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-11 Score=104.63 Aligned_cols=90 Identities=11% Similarity=0.101 Sum_probs=59.8
Q ss_pred CCEEEEEEecCC--ChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEE--EEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 236 GKTVGLYFSARW--CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFE--VVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 236 gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~--vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
++.++|+|+++| |++|+.+.|.|.+++++| ++ +. ++.|++|.
T Consensus 34 ~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~----------v~~~~~~Vd~d~----------------------- 79 (142)
T 2es7_A 34 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQ----------FDWQVAVADLEQ----------------------- 79 (142)
T ss_dssp CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TT----------SCCEEEEECHHH-----------------------
T ss_pred CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cc----------cceeEEEEECCC-----------------------
Confidence 345788899877 999999999999999988 43 66 77777653
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccC
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL 374 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~ 374 (438)
..++++.|+|.++||++++ ++|+++.+. .|.. +. ++|.+.|++.+...
T Consensus 80 ~~~la~~~~V~~iPT~~~f-k~G~~v~~~-------~G~~----~~---~~l~~~i~~~l~~~ 127 (142)
T 2es7_A 80 SEAIGDRFNVRRFPATLVF-TDGKLRGAL-------SGIH----PW---AELLTLMRSIVDTP 127 (142)
T ss_dssp HHHHHHTTTCCSSSEEEEE-SCC----CE-------ESCC----CH---HHHHHHHHHHHC--
T ss_pred CHHHHHhcCCCcCCeEEEE-eCCEEEEEE-------eCCC----CH---HHHHHHHHHHhccc
Confidence 2678999999999999999 999998763 3421 22 45666666655443
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-11 Score=99.95 Aligned_cols=72 Identities=19% Similarity=0.416 Sum_probs=59.3
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcC-CCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhc
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN-GSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 148 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 148 (438)
.+++++|+||++||++|+.+.|.|.++++++++. +.++.++.|+.|.. ..+++.|
T Consensus 24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~------------------------~~l~~~~ 79 (133)
T 1x5d_A 24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVN------------------------QVLASRY 79 (133)
T ss_dssp SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTC------------------------CHHHHHH
T ss_pred CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCC------------------------HHHHHhC
Confidence 4789999999999999999999999999999731 11388888877643 5788899
Q ss_pred CcCccceEEEecCCCCCCCcc
Q 013684 149 DIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 149 ~v~~~P~~~lvd~~~~~G~v~ 169 (438)
+|.++|++++++ +|+.+
T Consensus 80 ~v~~~Pt~~~~~----~g~~~ 96 (133)
T 1x5d_A 80 GIRGFPTIKIFQ----KGESP 96 (133)
T ss_dssp TCCSSSEEEEEE----TTEEE
T ss_pred CCCeeCeEEEEe----CCCce
Confidence 999999999998 45544
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.2e-11 Score=97.52 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=60.2
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+|+++|+||++||++|+.+.|.|.++++++++ ++.++.|+.|.. ..+++.|++
T Consensus 24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~v 76 (112)
T 1ep7_A 24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAG---KVIFLKVDVDAV------------------------AAVAEAAGI 76 (112)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTT------------------------HHHHHHHTC
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC---CeEEEEEECCch------------------------HHHHHHcCC
Confidence 79999999999999999999999999998854 388888877643 678899999
Q ss_pred CccceEEEecCCCCCCCcccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~ 171 (438)
.++|+++++ + +|+++.+
T Consensus 77 ~~~Pt~~~~-~---~G~~~~~ 93 (112)
T 1ep7_A 77 TAMPTFHVY-K---DGVKADD 93 (112)
T ss_dssp CBSSEEEEE-E---TTEEEEE
T ss_pred CcccEEEEE-E---CCeEEEE
Confidence 999998777 5 8887754
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.8e-11 Score=102.19 Aligned_cols=72 Identities=18% Similarity=0.365 Sum_probs=62.0
Q ss_pred cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhc
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 148 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 148 (438)
.+||+++|+||++||++|+.+.|.|.++++++. ++.++.|++|.. .++++.|
T Consensus 44 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~v~~~~v~~~~~------------------------~~~~~~~ 95 (139)
T 3d22_A 44 RDGKIVLANFSARWCGPSRQIAPYYIELSENYP----SLMFLVIDVDEL------------------------SDFSASW 95 (139)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTS------------------------HHHHHHT
T ss_pred hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CCEEEEEeCccc------------------------HHHHHHc
Confidence 468999999999999999999999999998873 388888887744 6788999
Q ss_pred CcCccceEEEecCCCCCCCccccc
Q 013684 149 DIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 149 ~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+|.++|+++++ + +|+++.+.
T Consensus 96 ~v~~~Pt~~~~-~---~G~~~~~~ 115 (139)
T 3d22_A 96 EIKATPTFFFL-R---DGQQVDKL 115 (139)
T ss_dssp TCCEESEEEEE-E---TTEEEEEE
T ss_pred CCCcccEEEEE-c---CCeEEEEE
Confidence 99999999988 6 99887553
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.9e-11 Score=95.49 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=62.4
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+|+|+|||+|+...|.++++.+. + ++.++.|.+|...+ ...++
T Consensus 24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~--~----------~v~~~~vdVde~r~-------------------~Sn~I 72 (112)
T 3iv4_A 24 NKYVFVLKHSETCPISANAYDQFNKFLYE--R----------DMDGYYLIVQQERD-------------------LSDYI 72 (112)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHH--H----------TCCEEEEEGGGGHH-------------------HHHHH
T ss_pred CCCEEEEEECCcCHhHHHHHHHHHHHhcc--C----------CceEEEEEeecCch-------------------hhHHH
Confidence 78999999999999999999999999874 2 47899999886531 12568
Q ss_pred HHhcCcC-ceeeEEEECCCCcEEEcc
Q 013684 316 TKYFDVQ-GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 316 ~~~~~v~-~~P~~~lid~~G~i~~~~ 340 (438)
++.|||+ ..|+++++ ++|+++.+.
T Consensus 73 A~~~~V~h~sPq~il~-k~G~~v~~~ 97 (112)
T 3iv4_A 73 AKKTNVKHESPQAFYF-VNGEMVWNR 97 (112)
T ss_dssp HHHHTCCCCSSEEEEE-ETTEEEEEE
T ss_pred HHHhCCccCCCeEEEE-ECCEEEEEe
Confidence 9999999 59999999 999999875
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-11 Score=99.65 Aligned_cols=87 Identities=16% Similarity=0.280 Sum_probs=66.2
Q ss_pred CCCCCEEecc-cc--CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCccccc
Q 013684 58 KEIGEEVKVS-DL--EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVP 134 (438)
Q Consensus 58 ~~~g~~v~l~-~~--~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~ 134 (438)
+.+|+...+. .+ .+++++|+||++||++|+.+.|.|.++++++ . ++.++.|++|..
T Consensus 7 ~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~--~--~v~~~~vd~~~~----------------- 65 (118)
T 2f51_A 7 HFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN--K--DVTFIKVDVDKN----------------- 65 (118)
T ss_dssp EECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC--T--TSEEEEEETTTC-----------------
T ss_pred EecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC--C--CeEEEEEECCCC-----------------
Confidence 4455444444 22 4899999999999999999999999999987 2 388888887754
Q ss_pred CCChHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 135 YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 135 ~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..+++.|+|.++|++++++....+|+++.+.
T Consensus 66 -------~~~~~~~~i~~~Pt~~~~~~~~~~G~~~~~~ 96 (118)
T 2f51_A 66 -------GNAADAYGVSSIPALFFVKKEGNEIKTLDQF 96 (118)
T ss_dssp -------HHHHHHTTCCSSSEEEEEEEETTEEEEEEEE
T ss_pred -------HHHHHhcCCCCCCEEEEEeCCCCcceEEEee
Confidence 5788999999999999997300116666543
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.2e-11 Score=98.73 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=57.9
Q ss_pred CEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC
Q 013684 72 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 151 (438)
Q Consensus 72 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 151 (438)
+.++|+||++||++|+.+.|.|.++++++++.+ +.++.|++|.. ..+++.|+|.
T Consensus 23 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~--v~~~~vd~~~~------------------------~~~~~~~~v~ 76 (126)
T 1x5e_A 23 GDWMIEFYAPWCPACQNLQPEWESFAEWGEDLE--VNIAKVDVTEQ------------------------PGLSGRFIIN 76 (126)
T ss_dssp SEEEEEEECSSCHHHHHHHHHHHHHHHHHGGGT--CEEEEEETTTC------------------------HHHHHHTTCC
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECcCC------------------------HHHHHHcCCc
Confidence 349999999999999999999999999987643 88888877644 5688999999
Q ss_pred ccceEEEecCCCCCCCc
Q 013684 152 GIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 152 ~~P~~~lvd~~~~~G~v 168 (438)
++|+++++ + +|++
T Consensus 77 ~~Pt~~~~-~---~G~~ 89 (126)
T 1x5e_A 77 ALPTIYHC-K---DGEF 89 (126)
T ss_dssp SSSEEEEE-E---TTEE
T ss_pred ccCEEEEE-e---CCeE
Confidence 99999999 6 8875
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.9e-11 Score=99.76 Aligned_cols=70 Identities=19% Similarity=0.381 Sum_probs=60.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|+||++||++|+.+.|.|.++++++. ++.++.|++|.. .++++.|+
T Consensus 36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~------------------------~~l~~~~~ 87 (125)
T 1r26_A 36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP----TVKFAKVDADNN------------------------SEIVSKCR 87 (125)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC----CCEEEEEECCCC------------------------HHHHHHcC
Confidence 67999999999999999999999999999872 388888887754 57889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|+++++ + +|+++.+
T Consensus 88 v~~~Pt~~i~-~---~G~~~~~ 105 (125)
T 1r26_A 88 VLQLPTFIIA-R---SGKMLGH 105 (125)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCcccEEEEE-e---CCeEEEE
Confidence 9999998887 5 8887654
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.16 E-value=7.2e-11 Score=94.26 Aligned_cols=73 Identities=25% Similarity=0.460 Sum_probs=61.4
Q ss_pred ccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhh
Q 013684 68 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 147 (438)
Q Consensus 68 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 147 (438)
+.++++++|+||++||++|+.+.|.|.+++++++. ++.++.|+.|.. ..+++.
T Consensus 17 ~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~~------------------------~~~~~~ 69 (106)
T 1xwb_A 17 KASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD---NVVVLKVDVDEC------------------------EDIAME 69 (106)
T ss_dssp HHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TEEEEEEETTTC------------------------HHHHHH
T ss_pred hcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC---CeEEEEEeccch------------------------HHHHHH
Confidence 34689999999999999999999999999998752 488888887644 578899
Q ss_pred cCcCccceEEEecCCCCCCCcccc
Q 013684 148 FDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 148 ~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|++.++|+++++ + +|+++.+
T Consensus 70 ~~v~~~Pt~~~~-~---~G~~~~~ 89 (106)
T 1xwb_A 70 YNISSMPTFVFL-K---NGVKVEE 89 (106)
T ss_dssp TTCCSSSEEEEE-E---TTEEEEE
T ss_pred cCCCcccEEEEE-c---CCcEEEE
Confidence 999999998777 4 8877654
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-11 Score=99.33 Aligned_cols=73 Identities=21% Similarity=0.410 Sum_probs=60.4
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
.+.+||+++|+||++||++|+.+.|.|.++++++ ++.++.|+.|.. ..+++
T Consensus 29 ~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-----~~~~~~vd~~~~------------------------~~~~~ 79 (117)
T 2xc2_A 29 EQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-----DAIFVKVDVDKL------------------------EETAR 79 (117)
T ss_dssp HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-----SSEEEEEETTTS------------------------HHHHH
T ss_pred HhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-----CcEEEEEECCcc------------------------HHHHH
Confidence 3347899999999999999999999999988876 377888877643 67889
Q ss_pred hcCcCccceEEEecCCCCCCCccccc
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.|+|.++|+++++ + +|+++.+.
T Consensus 80 ~~~v~~~Pt~~~~-~---~G~~~~~~ 101 (117)
T 2xc2_A 80 KYNISAMPTFIAI-K---NGEKVGDV 101 (117)
T ss_dssp HTTCCSSSEEEEE-E---TTEEEEEE
T ss_pred HcCCCccceEEEE-e---CCcEEEEE
Confidence 9999999998887 5 88876543
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-11 Score=108.39 Aligned_cols=91 Identities=15% Similarity=0.095 Sum_probs=62.9
Q ss_pred CCCCEEeccccCCCEEEEEEeccCCccchhhHHH---HHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccC
Q 013684 59 EIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGV---LVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY 135 (438)
Q Consensus 59 ~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~---l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~ 135 (438)
...+.+.....+||+|||+|||+||++|+.+.|. ..++.+.+++. +.++.|+.|+.++-...|.
T Consensus 27 ~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~---fv~ikVD~de~~~l~~~y~---------- 93 (173)
T 3ira_A 27 WGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEA---FVSIKVDREERPDIDNIYM---------- 93 (173)
T ss_dssp SSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHH---CEEEEEETTTCHHHHHHHH----------
T ss_pred cCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhc---CceeeeCCcccCcHHHHHH----------
Confidence 3344455555679999999999999999999883 24566666542 7777777665543211111
Q ss_pred CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 136 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 136 ~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
..+...+++.++|+++++++ +|+++..
T Consensus 94 ------~~~q~~~gv~g~Pt~v~l~~---dG~~v~~ 120 (173)
T 3ira_A 94 ------TVCQIILGRGGWPLNIIMTP---GKKPFFA 120 (173)
T ss_dssp ------HHHHHHHSCCCSSEEEEECT---TSCEEEE
T ss_pred ------HHHHHHcCCCCCcceeeECC---CCCceee
Confidence 11222359999999999999 9998865
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.9e-11 Score=98.14 Aligned_cols=70 Identities=23% Similarity=0.487 Sum_probs=59.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++|+++|+||++||++|+.+.|.|.+++++++ ++.++.|+.|.. ..+++.|+
T Consensus 33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~vd~~~~------------------------~~~~~~~~ 84 (122)
T 2vlu_A 33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFP----NAVFLKVDVDEL------------------------KPIAEQFS 84 (122)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CcEEEEEECCCC------------------------HHHHHHcC
Confidence 58999999999999999999999999998874 377888877754 67889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.++|+++++ + +|+++.+
T Consensus 85 v~~~Pt~~~~-~---~G~~~~~ 102 (122)
T 2vlu_A 85 VEAMPTFLFM-K---EGDVKDR 102 (122)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCcccEEEEE-e---CCEEEEE
Confidence 9999998887 5 8887754
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-11 Score=108.79 Aligned_cols=119 Identities=10% Similarity=0.162 Sum_probs=91.0
Q ss_pred HhhccchhHHHHHhhcccccC--C---------CC----CEEeccc-cCCCEEEEEEe-ccCCccch-hhHHHHHHHHHH
Q 013684 38 LIMSLSQWYVQQLRRRMTSTK--E---------IG----EEVKVSD-LEGKVTALYFS-ANWYPPCG-NFTGVLVDVYEE 99 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~--~---------~g----~~v~l~~-~~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~ 99 (438)
.+|+.+|+|+ +.+ . +| +.+++++ ++||+++|+|| +.|||.|. .+++.+++.+++
T Consensus 2 ~vGd~aPdf~--------l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~ 73 (182)
T 1xiy_A 2 KENDLIPNVK--------VMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDY 73 (182)
T ss_dssp CTTCBCCCCE--------EEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHH
T ss_pred CCCCCCCCeE--------EEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 3799999999 766 3 67 7899998 69998888777 89999999 999999999999
Q ss_pred H-hcCCCCE-EEEEEecCCCHHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcC-----------ccceEEEecCCCCC
Q 013684 100 L-RNNGSDF-EVVFVSSDEDLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDK 165 (438)
Q Consensus 100 ~-~~~~~~~-~iv~vs~D~~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~-----------~~P~~~lvd~~~~~ 165 (438)
| +..| + .|++||.| +....++|.++.+...++ .+|.+ .++++.||+. ..+.++||+ +
T Consensus 74 f~~~~g--~~~V~gvS~D-~~~~~~~~~~~~~~~~f~lLsD~~--~~~a~~yGv~~~~~~~G~g~~~~R~tfvId----d 144 (182)
T 1xiy_A 74 FIKENN--FDDIYCITNN-DIYVLKSWFKSMDIKKIKYISDGN--SSFTDSMNMLVDKSNFFMGMRPWRFVAIVE----N 144 (182)
T ss_dssp HHTTSC--CSEEEEEESS-CHHHHHHHHHHTTCCSSEEEECTT--SHHHHHTTCEEECGGGTCCEEECCEEEEEE----T
T ss_pred HHHhCC--CcEEEEEeCC-CHHHHHHHHHHcCCCCceEEEeCc--hHHHHHhCCceeccccCCCCceEEEEEEEc----C
Confidence 9 8876 8 49999999 555566666655532122 33544 7889999873 256788996 8
Q ss_pred CCcccccc
Q 013684 166 DDATLHDG 173 (438)
Q Consensus 166 G~v~~~~~ 173 (438)
|+|++...
T Consensus 145 G~V~~~~v 152 (182)
T 1xiy_A 145 NILVKMFQ 152 (182)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEEE
Confidence 99887654
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.15 E-value=6.7e-11 Score=94.78 Aligned_cols=71 Identities=17% Similarity=0.392 Sum_probs=61.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++||++|+.+.|.|.++++++++ ++.++.|+.|.+ ..+++.|+
T Consensus 17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~~------------------------~~~~~~~~ 69 (109)
T 2yzu_A 17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG---KLLVAKLDVDEN------------------------PKTAMRYR 69 (109)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT---TBEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC---ceEEEEEECCCC------------------------HhHHHhCC
Confidence 478999999999999999999999999998864 388888887754 57888999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.++|+++++ + +|+++.+
T Consensus 70 v~~~Pt~~~~-~---~g~~~~~ 87 (109)
T 2yzu_A 70 VMSIPTVILF-K---DGQPVEV 87 (109)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCcCCEEEEE-e---CCcEeee
Confidence 9999999999 6 8887654
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-11 Score=97.08 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=59.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|+||++||++|+.+.|.|.++.+++. ++.++.|+.|.. .++++.|+
T Consensus 18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~------------------------~~l~~~~~ 69 (110)
T 2l6c_A 18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP----QVAISSVDSEAR------------------------PELMKELG 69 (110)
T ss_dssp TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT----TSCEEEEEGGGC------------------------HHHHHHTT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC----CcEEEEEcCcCC------------------------HHHHHHcC
Confidence 57899999999999999999999999887763 377887776643 67889999
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.++|+++++ + +|+++.+.
T Consensus 70 v~~~Pt~~~~-~---~G~~v~~~ 88 (110)
T 2l6c_A 70 FERVPTLVFI-R---DGKVAKVF 88 (110)
T ss_dssp CCSSCEEEEE-E---SSSEEEEE
T ss_pred CcccCEEEEE-E---CCEEEEEE
Confidence 9999999999 6 89887653
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-12 Score=111.59 Aligned_cols=82 Identities=15% Similarity=0.253 Sum_probs=61.7
Q ss_pred CEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHH
Q 013684 62 EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 141 (438)
Q Consensus 62 ~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 141 (438)
+.+.....+||+|+|+|||+||++|+.+.|.|.++.+..... +.++.|++|.+.+
T Consensus 37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~---~~~~~v~~d~~~~---------------------- 91 (164)
T 1sen_A 37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS---HNFVMVNLEDEEE---------------------- 91 (164)
T ss_dssp HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH---TTSEEEEEEGGGS----------------------
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcC---CeEEEEEecCCch----------------------
Confidence 345556667999999999999999999999999977665432 5567777764422
Q ss_pred HHHhhhcCc--CccceEEEecCCCCCCCccccc
Q 013684 142 KALNRKFDI--EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 142 ~~l~~~~~v--~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.+...|++ ..+|+++++|+ +|+++.+.
T Consensus 92 -~~~~~~~~~~~~~Pt~~~~d~---~G~~~~~~ 120 (164)
T 1sen_A 92 -PKDEDFSPDGGYIPRILFLDP---SGKVHPEI 120 (164)
T ss_dssp -CSCGGGCTTCSCSSEEEEECT---TSCBCTTC
T ss_pred -HHHHHhcccCCcCCeEEEECC---CCCEEEEE
Confidence 13455666 66999999999 99988653
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.15 E-value=6.3e-11 Score=94.43 Aligned_cols=83 Identities=17% Similarity=0.276 Sum_probs=64.9
Q ss_pred CCCCCEEeccc-cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCC
Q 013684 58 KEIGEEVKVSD-LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYS 136 (438)
Q Consensus 58 ~~~g~~v~l~~-~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~ 136 (438)
+.+++.+.... -.+++++|+||++||++|+.+.|.|.++++++++ ++.++.|+.|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~~------------------- 61 (105)
T 1fb6_A 4 DVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG---KIAVYKLNTDEA------------------- 61 (105)
T ss_dssp ECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TCEEEEEETTTC-------------------
T ss_pred echhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcC---ceEEEEEcCcch-------------------
Confidence 44444443322 2478999999999999999999999999998864 388888877644
Q ss_pred ChHHHHHHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 137 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 137 d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
..+++.|++.++|+++++ + +|+++.+
T Consensus 62 -----~~~~~~~~v~~~Pt~~~~-~---~g~~~~~ 87 (105)
T 1fb6_A 62 -----PGIATQYNIRSIPTVLFF-K---NGERKES 87 (105)
T ss_dssp -----HHHHHHTTCCSSSEEEEE-E---TTEEEEE
T ss_pred -----HHHHHhCCCCcccEEEEE-e---CCeEEEE
Confidence 578899999999998888 5 8887654
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.14 E-value=5e-11 Score=102.65 Aligned_cols=70 Identities=17% Similarity=0.436 Sum_probs=60.6
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++|+++|+||++||++|+.+.|.|.++++++. ++.++.|++|.. ..+++.|+
T Consensus 31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~~~~------------------------~~l~~~~~ 82 (153)
T 2wz9_A 31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP----QVSFVKLEAEGV------------------------PEVSEKYE 82 (153)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTS------------------------HHHHHHTT
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC----CeEEEEEECCCC------------------------HHHHHHcC
Confidence 48999999999999999999999999998862 488888877754 57889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|++++++ +|+++.+
T Consensus 83 v~~~Pt~~~~~----~G~~~~~ 100 (153)
T 2wz9_A 83 ISSVPTFLFFK----NSQKIDR 100 (153)
T ss_dssp CCSSSEEEEEE----TTEEEEE
T ss_pred CCCCCEEEEEE----CCEEEEE
Confidence 99999999998 7877654
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.6e-11 Score=97.37 Aligned_cols=75 Identities=20% Similarity=0.458 Sum_probs=59.2
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.|++++|+||++|||+|+.+.|.|.+++++++ ..+++++++... +.+....+++.|+
T Consensus 28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~-----~~v~~~~~~~~~------------------~~~~~~~~~~~~~ 84 (118)
T 1zma_A 28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETK-----AHIYFINSEEPS------------------QLNDLQAFRSRYG 84 (118)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC-----CCCEEEETTCGG------------------GHHHHHHHHHHHT
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHhcC-----CeEEEEECCCcC------------------cHHHHHHHHHHcC
Confidence 57899999999999999999999999998874 336667666432 1222368889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|++++++ +|+++.+
T Consensus 85 i~~~Pt~~~~~----~G~~~~~ 102 (118)
T 1zma_A 85 IPTVPGFVHIT----DGQINVR 102 (118)
T ss_dssp CCSSCEEEEEE----TTEEEEE
T ss_pred CCCCCeEEEEE----CCEEEEE
Confidence 99999999995 7876644
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-11 Score=101.31 Aligned_cols=72 Identities=19% Similarity=0.420 Sum_probs=59.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++|+++|+||++||++|+.+.|.|.++++++++.+.++.++.|+.+.. ..+++.|+
T Consensus 23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~~~~~~~ 78 (120)
T 1mek_A 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE------------------------SDLAQQYG 78 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC------------------------CSSHHHHT
T ss_pred cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCC------------------------HHHHHHCC
Confidence 579999999999999999999999999999877544566666655532 35678899
Q ss_pred cCccceEEEecCCCCCCCcc
Q 013684 150 IEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~ 169 (438)
+.++|+++++ + +|+.+
T Consensus 79 v~~~Pt~~~~-~---~g~~~ 94 (120)
T 1mek_A 79 VRGYPTIKFF-R---NGDTA 94 (120)
T ss_dssp CCSSSEEEEE-E---SSCSS
T ss_pred CCcccEEEEE-e---CCCcC
Confidence 9999999999 4 77654
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-11 Score=111.75 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=61.9
Q ss_pred cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhc
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 148 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 148 (438)
..|++++|+||++||++|+.+.|.|.++++++++ ++.++.|++|.. ..+++.|
T Consensus 112 ~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~---~v~~~~vd~~~~------------------------~~l~~~~ 164 (210)
T 3apq_A 112 NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDG---LLRIGAVNCGDD------------------------RMLCRMK 164 (210)
T ss_dssp HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBT---TBEEEEEETTTC------------------------HHHHHHT
T ss_pred ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcC---ceEEEEEECCcc------------------------HHHHHHc
Confidence 4689999999999999999999999999999854 388888877644 5788999
Q ss_pred CcCccceEEEecCCCCCCCcccc
Q 013684 149 DIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 149 ~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+|.++|+++++ + +|+++.+
T Consensus 165 ~v~~~Pt~~~~-~---~G~~~~~ 183 (210)
T 3apq_A 165 GVNSYPSLFIF-R---SGMAAVK 183 (210)
T ss_dssp TCCSSSEEEEE-C---TTSCCEE
T ss_pred CCCcCCeEEEE-E---CCCceeE
Confidence 99999999999 6 8887654
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.7e-11 Score=113.04 Aligned_cols=69 Identities=28% Similarity=0.485 Sum_probs=60.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+|||+||++|+.+.|.+.++++++++. +.++.|++|.+. ...
T Consensus 34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~----------~~~~~v~~d~~~---------------------~~~ 82 (298)
T 3ed3_A 34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV----------VQVAAVNCDLNK---------------------NKA 82 (298)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------SEEEEEETTSTT---------------------THH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC----------cEEEEEEccCcc---------------------CHH
Confidence 4789999999999999999999999999998753 789999998542 378
Q ss_pred HHHhcCcCceeeEEEECCCCc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGK 335 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~ 335 (438)
+++.|+|.++||+++++. |+
T Consensus 83 l~~~~~I~~~Pt~~~~~~-g~ 102 (298)
T 3ed3_A 83 LCAKYDVNGFPTLMVFRP-PK 102 (298)
T ss_dssp HHHHTTCCBSSEEEEEEC-CC
T ss_pred HHHhCCCCccceEEEEEC-Cc
Confidence 999999999999999954 54
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.1e-11 Score=94.35 Aligned_cols=73 Identities=19% Similarity=0.434 Sum_probs=61.0
Q ss_pred ccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhh
Q 013684 68 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 147 (438)
Q Consensus 68 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 147 (438)
+.++++++|+||++||++|+.+.|.|.++++++. ++.++.|+.|.. ..+++.
T Consensus 16 ~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~------------------------~~~~~~ 67 (104)
T 2vim_A 16 ENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP----EVEFAKVDVDQN------------------------EEAAAK 67 (104)
T ss_dssp TTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTC------------------------HHHHHH
T ss_pred hcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC----CCEEEEEeccCC------------------------HHHHHH
Confidence 3468999999999999999999999999998874 388888877644 578889
Q ss_pred cCcCccceEEEecCCCCCCCccccc
Q 013684 148 FDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 148 ~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|++.++|++++++ +|+++.+.
T Consensus 68 ~~v~~~Pt~~~~~----~g~~~~~~ 88 (104)
T 2vim_A 68 YSVTAMPTFVFIK----DGKEVDRF 88 (104)
T ss_dssp TTCCSSSEEEEEE----TTEEEEEE
T ss_pred cCCccccEEEEEe----CCcEEEEE
Confidence 9999999988875 78776543
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.4e-11 Score=109.58 Aligned_cols=69 Identities=20% Similarity=0.382 Sum_probs=56.3
Q ss_pred cCCCEEEEEEecC-CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 234 LVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 234 ~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
.++++++++||++ ||++|+.+.|.+.++++. . +++.++.|+++... .
T Consensus 20 ~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~----------~~v~~~~vd~~~~~---------------------~ 67 (226)
T 1a8l_A 20 MVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-T----------DKLSYEIVDFDTPE---------------------G 67 (226)
T ss_dssp CCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-C----------TTEEEEEEETTSHH---------------------H
T ss_pred cCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-C----------CceEEEEEeCCCcc---------------------c
Confidence 4567889999999 999999999999998753 2 25889999887421 2
Q ss_pred HHHHHhcCcCceeeEEEECCCCc
Q 013684 313 KELTKYFDVQGIPCLVIIGPEGK 335 (438)
Q Consensus 313 ~~l~~~~~v~~~P~~~lid~~G~ 335 (438)
.++++.|||.++||++++ ++|+
T Consensus 68 ~~~~~~~~v~~~Pt~~~~-~~g~ 89 (226)
T 1a8l_A 68 KELAKRYRIDRAPATTIT-QDGK 89 (226)
T ss_dssp HHHHHHTTCCSSSEEEEE-ETTB
T ss_pred HHHHHHcCCCcCceEEEE-cCCc
Confidence 678999999999999999 5664
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=6.4e-11 Score=97.80 Aligned_cols=74 Identities=18% Similarity=0.324 Sum_probs=59.8
Q ss_pred ccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhh
Q 013684 68 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 147 (438)
Q Consensus 68 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 147 (438)
+.+||+++|+||++||++|+.+.|.+.+++++++ ++.++.|+.+.. ..++++.
T Consensus 34 ~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~----~~~~~~vd~~~~-----------------------~~~~~~~ 86 (124)
T 1faa_A 34 AAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL----DVIFLKLDCNQE-----------------------NKTLAKE 86 (124)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSST-----------------------THHHHHH
T ss_pred hcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC----CCEEEEEecCcc-----------------------hHHHHHH
Confidence 3468999999999999999999999999998874 377777776621 0678899
Q ss_pred cCcCccceEEEecCCCCCCCccccc
Q 013684 148 FDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 148 ~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|++.++|+++++ + +|+++.+.
T Consensus 87 ~~v~~~Pt~~~~-~---~G~~~~~~ 107 (124)
T 1faa_A 87 LGIRVVPTFKIL-K---ENSVVGEV 107 (124)
T ss_dssp HCCSSSSEEEEE-E---TTEEEEEE
T ss_pred cCCCeeeEEEEE-e---CCcEEEEE
Confidence 999999996665 5 88877553
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-11 Score=99.47 Aligned_cols=72 Identities=19% Similarity=0.361 Sum_probs=61.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++|+++|+||++||++|+.+.|.|.++++++++.+ +.++.|+.|.. ..+++.|+
T Consensus 32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~--v~~~~vd~d~~------------------------~~~~~~~~ 85 (121)
T 2j23_A 32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDK--VGFYKVDVDEQ------------------------SQIAQEVG 85 (121)
T ss_dssp SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHH--SEEEEEETTTC------------------------HHHHHHHT
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCc--EEEEEEECcCC------------------------HHHHHHcC
Confidence 57899999999999999999999999998887653 88888887754 57889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.++|++++++ +|+++.+
T Consensus 86 v~~~Pt~~~~~----~G~~~~~ 103 (121)
T 2j23_A 86 IRAMPTFVFFK----NGQKIDT 103 (121)
T ss_dssp CCSSSEEEEEE----TTEEEEE
T ss_pred CCcccEEEEEE----CCeEEee
Confidence 99999999885 8877655
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=99.13 E-value=3.7e-11 Score=111.52 Aligned_cols=70 Identities=10% Similarity=0.151 Sum_probs=59.0
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+|++|+|+|||+||++|+.+.|.|.+++++|. ++.|+.|+++. ..
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~-----------~v~f~kVd~d~------------------------~~ 176 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP-----------MVKFCKIKASN------------------------TG 176 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT-----------TSEEEEEEHHH------------------------HC
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-----------CCEEEEEeCCc------------------------HH
Confidence 48999999999999999999999999998875 46788887642 23
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.|+|.++||++++ ++|+++.+.
T Consensus 177 l~~~~~I~~~PTll~~-~~G~~v~~~ 201 (245)
T 1a0r_P 177 AGDRFSSDVLPTLLVY-KGGELLSNF 201 (245)
T ss_dssp CTTSSCTTTCSEEEEE-ETTEEEEEE
T ss_pred HHHHCCCCCCCEEEEE-ECCEEEEEE
Confidence 5678999999999999 699998763
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.2e-10 Score=110.73 Aligned_cols=67 Identities=16% Similarity=0.301 Sum_probs=55.1
Q ss_pred CEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 013684 237 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 316 (438)
Q Consensus 237 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 316 (438)
+.++|+|+++||++|+.+.|.+.+++++|+++ +.++.|+++... ...++
T Consensus 136 ~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~----------i~f~~vd~~~~~---------------------~~~~~ 184 (361)
T 3uem_A 136 KTHILLFLPKSVSDYDGKLSNFKTAAESFKGK----------ILFIFIDSDHTD---------------------NQRIL 184 (361)
T ss_dssp CEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT----------CEEEEECTTSGG---------------------GHHHH
T ss_pred CcEEEEEEeCCchhHHHHHHHHHHHHHHccCc----------eEEEEecCChHH---------------------HHHHH
Confidence 57899999999999999999999999999864 667777665322 37789
Q ss_pred HhcCcCc--eeeEEEECCCC
Q 013684 317 KYFDVQG--IPCLVIIGPEG 334 (438)
Q Consensus 317 ~~~~v~~--~P~~~lid~~G 334 (438)
+.|||.+ +|++++++.++
T Consensus 185 ~~fgi~~~~~P~~~~~~~~~ 204 (361)
T 3uem_A 185 EFFGLKKEECPAVRLITLEE 204 (361)
T ss_dssp HHTTCCTTTCSEEEEEECC-
T ss_pred HHcCCCccCCccEEEEEcCC
Confidence 9999988 99999997644
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=9.5e-11 Score=95.03 Aligned_cols=70 Identities=17% Similarity=0.330 Sum_probs=59.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+||+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.. ..+++.|+
T Consensus 25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~----~v~~~~vd~~~~------------------------~~~~~~~~ 76 (112)
T 1syr_A 25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT----KMVFIKVDVDEV------------------------SEVTEKEN 76 (112)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTT------------------------HHHHHHTT
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC----CCEEEEEECCCC------------------------HHHHHHcC
Confidence 58999999999999999999999999998863 388888877644 57888999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|+++++ + +|+++.+
T Consensus 77 v~~~Pt~~~~-~---~G~~~~~ 94 (112)
T 1syr_A 77 ITSMPTFKVY-K---NGSSVDT 94 (112)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCcccEEEEE-E---CCcEEEE
Confidence 9999998777 4 8877654
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-11 Score=102.60 Aligned_cols=74 Identities=11% Similarity=0.189 Sum_probs=61.9
Q ss_pred CCCEEEEEEeccC--CccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhh
Q 013684 70 EGKVTALYFSANW--YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 147 (438)
Q Consensus 70 ~gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 147 (438)
.+++|||+|||+| |++|+.+.|.|.++++++.++. +.++.|++|.. .+++.+
T Consensus 33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~--v~~~KVdvDe~------------------------~~lA~~ 86 (140)
T 2qgv_A 33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYT--WQVAIADLEQS------------------------EAIGDR 86 (140)
T ss_dssp TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSC--CEEEECCHHHH------------------------HHHHHH
T ss_pred CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCe--EEEEEEECCCC------------------------HHHHHH
Confidence 4578999999999 9999999999999999985431 77777755522 789999
Q ss_pred cCcCccceEEEecCCCCCCCcccccc
Q 013684 148 FDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 148 ~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|+|.++||++++. +|+++.+..
T Consensus 87 ygV~sIPTlilFk----~G~~v~~~~ 108 (140)
T 2qgv_A 87 FGAFRFPATLVFT----GGNYRGVLN 108 (140)
T ss_dssp HTCCSSSEEEEEE----TTEEEEEEE
T ss_pred cCCccCCEEEEEE----CCEEEEEEe
Confidence 9999999999997 898887644
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=95.96 Aligned_cols=71 Identities=24% Similarity=0.448 Sum_probs=60.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++||++|+.+.|.|.++++++++ ++.++.|++|.. ..+++.|+
T Consensus 29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~~------------------------~~~~~~~~ 81 (121)
T 2i1u_A 29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERAT---DLTVAKLDVDTN------------------------PETARNFQ 81 (121)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TCEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEECCCC------------------------HHHHHhcC
Confidence 478999999999999999999999999998754 388888887754 57889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|+++++. +|+++.+
T Consensus 82 i~~~Pt~~~~~----~g~~~~~ 99 (121)
T 2i1u_A 82 VVSIPTLILFK----DGQPVKR 99 (121)
T ss_dssp CCSSSEEEEEE----TTEEEEE
T ss_pred CCcCCEEEEEE----CCEEEEE
Confidence 99999998885 8877654
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-10 Score=92.70 Aligned_cols=70 Identities=14% Similarity=0.401 Sum_probs=60.3
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|+||++||++|+.+.|.|.++++++++ +.++.|+.|.. ..+++.|+
T Consensus 15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~v~~~~~------------------------~~~~~~~~ 66 (104)
T 2e0q_A 15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLNSDEN------------------------PDIAARYG 66 (104)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC----ceEEEEECCCC------------------------HHHHHhCC
Confidence 579999999999999999999999999888742 77888877644 57889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.++|+++++ + +|+++.+
T Consensus 67 v~~~Pt~~~~-~---~g~~~~~ 84 (104)
T 2e0q_A 67 VMSLPTVIFF-K---DGEPVDE 84 (104)
T ss_dssp CCSSCEEEEE-E---TTEEEEE
T ss_pred ccccCEEEEE-E---CCeEhhh
Confidence 9999999999 6 8887654
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=9.6e-11 Score=94.75 Aligned_cols=71 Identities=21% Similarity=0.503 Sum_probs=60.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.|++++|+||++||++|+.+.|.|.++.+++. ++.++.|+.|.. ..+++.|+
T Consensus 25 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~------------------------~~~~~~~~ 76 (113)
T 1ti3_A 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP----NVTFLKVDVDEL------------------------KAVAEEWN 76 (113)
T ss_dssp SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTC------------------------HHHHHHHH
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC----CcEEEEEEcccc------------------------HHHHHhCC
Confidence 58999999999999999999999999988874 388888877644 57788999
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.++|+++++ + +|+++.+.
T Consensus 77 v~~~Pt~~~~-~---~G~~~~~~ 95 (113)
T 1ti3_A 77 VEAMPTFIFL-K---DGKLVDKT 95 (113)
T ss_dssp CSSTTEEEEE-E---TTEEEEEE
T ss_pred CCcccEEEEE-e---CCEEEEEE
Confidence 9999999998 5 88877553
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-10 Score=114.50 Aligned_cols=88 Identities=14% Similarity=0.251 Sum_probs=67.2
Q ss_pred CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCC
Q 013684 222 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP 301 (438)
Q Consensus 222 ~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 301 (438)
.++++ .+...-..+++++|.|||+||++|+.+.|.+.++++++++.. ....++.++.|+++.+
T Consensus 9 ~l~~~-~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~----~~~~~v~~~~Vd~~~~------------ 71 (382)
T 2r2j_A 9 SLDTE-NIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEF----PNENQVVFARVDCDQH------------ 71 (382)
T ss_dssp BCCTT-THHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC-------CCEEEEEEETTTC------------
T ss_pred ECCHH-HHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhc----CCCCceEEEEEECCcc------------
Confidence 44444 443222247899999999999999999999999999996320 0012488888888755
Q ss_pred CcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEE
Q 013684 302 WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 302 ~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
..+++.|+|.++||++++ ++|+++.
T Consensus 72 -----------~~l~~~~~v~~~Pt~~~f-~~G~~~~ 96 (382)
T 2r2j_A 72 -----------SDIAQRYRISKYPTLKLF-RNGMMMK 96 (382)
T ss_dssp -----------HHHHHHTTCCEESEEEEE-ETTEEEE
T ss_pred -----------HHHHHhcCCCcCCEEEEE-eCCcEee
Confidence 678999999999999999 7888775
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-10 Score=98.04 Aligned_cols=83 Identities=19% Similarity=0.358 Sum_probs=59.9
Q ss_pred CCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCC
Q 013684 58 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD 137 (438)
Q Consensus 58 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d 137 (438)
+.+++.+.....+++.++|+||++||++|+.+.|.|.++++++++ ++.++.|++|..
T Consensus 37 ~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~~-------------------- 93 (140)
T 1v98_A 37 EADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAG---RLKVVKVNVDEH-------------------- 93 (140)
T ss_dssp ------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TEEEEEEETTTC--------------------
T ss_pred cCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccC---ceEEEEEECCCC--------------------
Confidence 455555544433443499999999999999999999999999864 388888887754
Q ss_pred hHHHHHHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 138 LETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 138 ~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
..+++.|++.++|+++++ + +|+++.+
T Consensus 94 ----~~l~~~~~v~~~Pt~~~~-~---~G~~~~~ 119 (140)
T 1v98_A 94 ----PGLAARYGVRSVPTLVLF-R---RGAPVAT 119 (140)
T ss_dssp ----HHHHHHTTCCSSSEEEEE-E---TTEEEEE
T ss_pred ----HHHHHHCCCCccCEEEEE-e---CCcEEEE
Confidence 578899999999999999 5 8887654
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=107.17 Aligned_cols=69 Identities=17% Similarity=0.281 Sum_probs=54.9
Q ss_pred CCCEEEEEE----ecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 013684 235 VGKTVGLYF----SARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 310 (438)
Q Consensus 235 ~gk~vll~F----~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 310 (438)
.+.++++.| |++||++|+.+.|.+.++++++.+. +++.++.|+++.+
T Consensus 20 ~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~--------~~v~~~~vd~~~~--------------------- 70 (229)
T 2ywm_A 20 KEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQ--------DKIKLDIYSPFTH--------------------- 70 (229)
T ss_dssp CSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCT--------TTEEEEEECTTTC---------------------
T ss_pred cCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCC--------CceEEEEecCccc---------------------
Confidence 344556666 5899999999999999999888532 2588888887755
Q ss_pred hhHHHHHhcCcCceeeEEEECCCCc
Q 013684 311 TIKELTKYFDVQGIPCLVIIGPEGK 335 (438)
Q Consensus 311 ~~~~l~~~~~v~~~P~~~lid~~G~ 335 (438)
.++++.|+|+++||+++++ +|+
T Consensus 71 --~~l~~~~~v~~~Ptl~~~~-~~~ 92 (229)
T 2ywm_A 71 --KEETEKYGVDRVPTIVIEG-DKD 92 (229)
T ss_dssp --HHHHHHTTCCBSSEEEEES-SSC
T ss_pred --HHHHHHcCCCcCcEEEEEC-CCc
Confidence 7899999999999999995 443
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.09 E-value=4.7e-11 Score=102.56 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=64.0
Q ss_pred cCCCEEEEEEeccCCccchhhHHHHHHHHH--HHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVLVDVYE--ELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~--~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
..||+|+|+|||+||++|+.+.|.+.+..+ ++.+. .++.|++|.+. ..+..
T Consensus 42 ~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~----~fv~V~vD~e~-----------------------~~~~~ 94 (151)
T 3ph9_A 42 KSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQN----KFIMLNLMHET-----------------------TDKNL 94 (151)
T ss_dssp HHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHH----TCEEEEESSCC-----------------------SCGGG
T ss_pred HcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhc----CeEEEEecCCc-----------------------hhhHh
Confidence 368999999999999999999999886422 22221 24555665321 11245
Q ss_pred hcCcCccceEEEecCCCCCCCcccccchhHHhhhCCCCccCChhHHHHHHHHH
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEE 199 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~ 199 (438)
.|++.++||++++++ +|+++.+... .++...|++.......+.+..
T Consensus 95 ~~~v~~~PT~~f~~~---~G~~v~~~~G----~~~~~~~~~~~~~~~~ll~~~ 140 (151)
T 3ph9_A 95 SPDGQYVPRIMFVDP---SLTVRADIAG----RYSNRLYTYEPRDLPLLIENM 140 (151)
T ss_dssp CTTCCCSSEEEEECT---TSCBCTTCCC----SCTTSTTCCCGGGHHHHHHHH
T ss_pred hcCCCCCCEEEEECC---CCCEEEEEeC----CcCCcccccchhhHHHHHHHH
Confidence 689999999999999 9998876431 122333556555555544433
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-10 Score=94.92 Aligned_cols=71 Identities=20% Similarity=0.425 Sum_probs=60.3
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++||++|+.+.|.|.+++++++ ++.++.|+.|.. ..+++.|+
T Consensus 27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~------------------------~~~~~~~~ 78 (118)
T 2vm1_A 27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP----GAIFLKVDVDEL------------------------KDVAEAYN 78 (118)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTS------------------------HHHHHHTT
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC----CcEEEEEEcccC------------------------HHHHHHcC
Confidence 47999999999999999999999999999874 378888877643 67889999
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.++|+++++ + +|+++.+.
T Consensus 79 v~~~Pt~~~~-~---~g~~~~~~ 97 (118)
T 2vm1_A 79 VEAMPTFLFI-K---DGEKVDSV 97 (118)
T ss_dssp CCSBSEEEEE-E---TTEEEEEE
T ss_pred CCcCcEEEEE-e---CCeEEEEe
Confidence 9999999888 5 88876543
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.4e-10 Score=99.40 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=58.4
Q ss_pred CCCEEEEEEec-------CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 235 VGKTVGLYFSA-------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 235 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
++.+|+|+||| .||++|+.+.|.+++++++|.... ++.++.|+.|++|.+
T Consensus 36 ~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~-----~~~~v~f~kvD~d~~------------------ 92 (178)
T 3ga4_A 36 PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQA-----PQSLNLFFTVDVNEV------------------ 92 (178)
T ss_dssp TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHC-----TTCCEEEEEEETTTC------------------
T ss_pred CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhcc-----CCCCEEEEEEECccC------------------
Confidence 35689999999 499999999999999999997320 013578888888765
Q ss_pred CCchhHHHHHhcCcCceeeEEEECCCC
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGPEG 334 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~~G 334 (438)
++++++|||+++||++++ ++|
T Consensus 93 -----~~la~~~~I~siPtl~~F-~~g 113 (178)
T 3ga4_A 93 -----PQLVKDLKLQNVPHLVVY-PPA 113 (178)
T ss_dssp -----HHHHHHTTCCSSCEEEEE-CCC
T ss_pred -----HHHHHHcCCCCCCEEEEE-cCC
Confidence 789999999999999999 454
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-10 Score=95.72 Aligned_cols=81 Identities=11% Similarity=0.178 Sum_probs=61.9
Q ss_pred CCCCCEEeccc-cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCC--CCEEEEEEecCCCHHHHHHhHhcCCccccc
Q 013684 58 KEIGEEVKVSD-LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNG--SDFEVVFVSSDEDLNAFNNYRACMPWLAVP 134 (438)
Q Consensus 58 ~~~g~~v~l~~-~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~--~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~ 134 (438)
+++++.+.... .++++++|+||++||++|+.+.|.|.++++++++.+ .++.++.|+.+...
T Consensus 11 ~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---------------- 74 (121)
T 2djj_A 11 VVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND---------------- 74 (121)
T ss_dssp ECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC----------------
T ss_pred EecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc----------------
Confidence 56666555442 468999999999999999999999999999997621 14777777766330
Q ss_pred CCChHHHHHHhhhcCcCccceEEEecCCCCCCCc
Q 013684 135 YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 135 ~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v 168 (438)
+++ +|.++|++++++. +|++
T Consensus 75 ---------~~~--~v~~~Pt~~~~~~---~~~~ 94 (121)
T 2djj_A 75 ---------VPD--EIQGFPTIKLYPA---GAKG 94 (121)
T ss_dssp ---------CSS--CCSSSSEEEEECS---SCTT
T ss_pred ---------ccc--ccCcCCeEEEEeC---cCCC
Confidence 222 8999999999997 7663
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.5e-11 Score=98.07 Aligned_cols=71 Identities=21% Similarity=0.466 Sum_probs=56.5
Q ss_pred CCCEEEEEEeccCCc--------------cchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccC
Q 013684 70 EGKVTALYFSANWYP--------------PCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY 135 (438)
Q Consensus 70 ~gk~vll~F~a~wC~--------------~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~ 135 (438)
.||+++|+||++||+ +|+.+.|.+.++++++++ ++.++.|++|..
T Consensus 20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~---~~~~~~vd~d~~------------------ 78 (123)
T 1oaz_A 20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG---KLTVAKLNIDQN------------------ 78 (123)
T ss_dssp CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC----------CEEEEEETTSC------------------
T ss_pred CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC---CeEEEEEECCCC------------------
Confidence 589999999999999 999999999999998864 388888887754
Q ss_pred CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 136 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 136 ~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
..+++.|+|.++|+++++ + +|+++.+
T Consensus 79 ------~~l~~~~~v~~~Pt~~~~-~---~G~~~~~ 104 (123)
T 1oaz_A 79 ------PGTAPKYGIRGIPTLLLF-K---NGEVAAT 104 (123)
T ss_dssp ------TTTGGGGTCCBSSEEEEE-E---SSSEEEE
T ss_pred ------HHHHHHcCCCccCEEEEE-E---CCEEEEE
Confidence 457789999999999999 7 9988754
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.5e-11 Score=107.77 Aligned_cols=72 Identities=21% Similarity=0.473 Sum_probs=61.5
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.. ..+++.|+
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~------------------------~~l~~~~~ 81 (222)
T 3dxb_A 29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN------------------------PGTAPKYG 81 (222)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------TTTGGGGT
T ss_pred cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCCC------------------------HHHHHHcC
Confidence 5799999999999999999999999999998653 88888888754 45678899
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|.++|++++++ +|+++.+.
T Consensus 82 v~~~Pt~~~~~----~G~~~~~~ 100 (222)
T 3dxb_A 82 IRGIPTLLLFK----NGEVAATK 100 (222)
T ss_dssp CCSBSEEEEEE----TTEEEEEE
T ss_pred CCcCCEEEEEE----CCeEEEEe
Confidence 99999999996 78776543
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.8e-11 Score=109.02 Aligned_cols=70 Identities=10% Similarity=0.152 Sum_probs=59.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+|++|+|+||++||++|+.+.|.|.+++++|. ++.|+.|+++ + ..
T Consensus 119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-----------~v~f~~vd~~-~-----------------------~~ 163 (217)
T 2trc_P 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-----------MVKFCKIRAS-N-----------------------TG 163 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-----------TSEEEEEEHH-H-----------------------HT
T ss_pred CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-----------CeEEEEEECC-c-----------------------HH
Confidence 46899999999999999999999999988774 4788888876 2 44
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.|+|.++||++++ ++|+++.+.
T Consensus 164 l~~~~~i~~~PTl~~~-~~G~~v~~~ 188 (217)
T 2trc_P 164 AGDRFSSDVLPTLLVY-KGGELISNF 188 (217)
T ss_dssp CSTTSCGGGCSEEEEE-ETTEEEEEE
T ss_pred HHHHCCCCCCCEEEEE-ECCEEEEEE
Confidence 6778999999999999 699988763
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.2e-12 Score=100.80 Aligned_cols=73 Identities=16% Similarity=0.325 Sum_probs=53.7
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
.+++++..||+++|+|||+|||+|+.+.|.|.++++++ ..|-+..|...
T Consensus 4 ~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~--------------~~v~~~~~~~~----------------- 52 (106)
T 3kp8_A 4 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV--------------PYVECSPNGPG----------------- 52 (106)
T ss_dssp HHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGS--------------CEEESCTTCTT-----------------
T ss_pred hhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhC--------------CEEEEeccccc-----------------
Confidence 45667777888999999999999999999998886432 23333332110
Q ss_pred CCchhHHHHHhcCcCceeeEEEECCCCcE
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~~G~i 336 (438)
+...++++.|+|.++||+++ +|+.
T Consensus 53 --~~~~~l~~~~~V~~~PT~~i---~G~~ 76 (106)
T 3kp8_A 53 --TPQAQECTEAGITSYPTWII---NGRT 76 (106)
T ss_dssp --SCCCHHHHHTTCCSSSEEEE---TTEE
T ss_pred --chhHHHHHHcCCeEeCEEEE---CCEE
Confidence 11367899999999999776 7764
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.6e-10 Score=84.28 Aligned_cols=62 Identities=11% Similarity=0.209 Sum_probs=51.9
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh
Q 013684 239 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 318 (438)
Q Consensus 239 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 318 (438)
..|.||++||++|+.+.|.+.++.++++. ++.++.|+ + .++++.
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~----------~~~~~~v~---~-----------------------~~~~~~ 45 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELGI----------DAEFEKIK---E-----------------------MDQILE 45 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTTC----------CEEEEEEC---S-----------------------HHHHHH
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcCC----------ceEEEEec---C-----------------------HHHHHH
Confidence 45899999999999999999999888753 36676665 2 567889
Q ss_pred cCcCceeeEEEECCCCcEEEc
Q 013684 319 FDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 319 ~~v~~~P~~~lid~~G~i~~~ 339 (438)
|+|.++||+++ +|+++.+
T Consensus 46 ~~v~~~Pt~~~---~G~~~~~ 63 (77)
T 1ilo_A 46 AGLTALPGLAV---DGELKIM 63 (77)
T ss_dssp HTCSSSSCEEE---TTEEEEC
T ss_pred CCCCcCCEEEE---CCEEEEc
Confidence 99999999988 8998876
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-10 Score=96.15 Aligned_cols=69 Identities=9% Similarity=0.033 Sum_probs=56.3
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+||+|+|+|||+||++|+.+.|.|.++++++. ++.++.|+++.. .+.|+
T Consensus 29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~----~v~~~~vd~~~~---------------------------~~~~~ 77 (135)
T 2dbc_A 29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP----ETKFVKAIVNSC---------------------------IEHYH 77 (135)
T ss_dssp SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS----SEEEEEECCSSS---------------------------CSSCC
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC----CcEEEEEEhhcC---------------------------cccCC
Confidence 36899999999999999999999999998862 477777766532 14799
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.++||+++++ +|+++.+..
T Consensus 78 i~~~Pt~~~~~----~G~~v~~~~ 97 (135)
T 2dbc_A 78 DNCLPTIFVYK----NGQIEGKFI 97 (135)
T ss_dssp SSCCSEEEEES----SSSCSEEEE
T ss_pred CCCCCEEEEEE----CCEEEEEEE
Confidence 99999999996 888776543
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-10 Score=95.21 Aligned_cols=77 Identities=16% Similarity=0.416 Sum_probs=59.7
Q ss_pred CCCEEEEEEecc-------CCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHH
Q 013684 70 EGKVTALYFSAN-------WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK 142 (438)
Q Consensus 70 ~gk~vll~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~ 142 (438)
.|++++|+|||+ ||++|+.+.|.|.++++++++ ++.++.|+++.... |. +. ..
T Consensus 23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~---~~~~~~vd~~~~~~-~~--------------d~--~~ 82 (123)
T 1wou_A 23 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE---GCVFIYCQVGEKPY-WK--------------DP--NN 82 (123)
T ss_dssp TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT---TEEEEEEECCCHHH-HH--------------CT--TC
T ss_pred CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC---CcEEEEEECCCchh-hh--------------ch--hH
Confidence 589999999999 999999999999999887753 48888888864211 00 11 15
Q ss_pred HHhhhcCcCccceEEEecCCCCCCCcc
Q 013684 143 ALNRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 143 ~l~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
.+++.|+|.++|++++++. .+++.
T Consensus 83 ~~~~~~~i~~~Pt~~~~~~---~~~~~ 106 (123)
T 1wou_A 83 DFRKNLKVTAVPTLLKYGT---PQKLV 106 (123)
T ss_dssp HHHHHHCCCSSSEEEETTS---SCEEE
T ss_pred HHHHHCCCCeeCEEEEEcC---CceEe
Confidence 6788899999999999985 44444
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.8e-11 Score=99.98 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=59.5
Q ss_pred EEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCc
Q 013684 73 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 152 (438)
Q Consensus 73 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 152 (438)
+++|+|||+||++|+.+.|.|.+++++++ +.++.|+++.+... ...+....+++.|+|.+
T Consensus 33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----v~~~~vd~~~~~~~---------------~~~d~~~~l~~~~~v~~ 92 (135)
T 3emx_A 33 DAILAVYSKTCPHCHRDWPQLIQASKEVD-----VPIVMFIWGSLIGE---------------RELSAARLEMNKAGVEG 92 (135)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHTTCC-----SCEEEEEECTTCCH---------------HHHHHHHHHHHHHTCCS
T ss_pred cEEEEEECCcCHhhhHhChhHHHHHHHCC-----CEEEEEECCCchhh---------------hhhhhhHHHHHHcCCce
Confidence 89999999999999999999999888762 67888887543221 01233478899999999
Q ss_pred cceEEEecCCCCCCCccccc
Q 013684 153 IPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 153 ~P~~~lvd~~~~~G~v~~~~ 172 (438)
+|++++++ +|+++.+.
T Consensus 93 ~Pt~~~~~----~G~~v~~~ 108 (135)
T 3emx_A 93 TPTLVFYK----EGRIVDKL 108 (135)
T ss_dssp SSEEEEEE----TTEEEEEE
T ss_pred eCeEEEEc----CCEEEEEE
Confidence 99888877 88877654
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.2e-10 Score=89.96 Aligned_cols=74 Identities=9% Similarity=0.134 Sum_probs=61.8
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|+|+|+|||+|+...|.+.++.++ + ++.++.|.+|..++ .+..+++.|+|
T Consensus 24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~--~---~v~~~~vdVde~r~--------------------~Sn~IA~~~~V 78 (112)
T 3iv4_A 24 NKYVFVLKHSETCPISANAYDQFNKFLYE--R---DMDGYYLIVQQERD--------------------LSDYIAKKTNV 78 (112)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHH--H---TCCEEEEEGGGGHH--------------------HHHHHHHHHTC
T ss_pred CCCEEEEEECCcCHhHHHHHHHHHHHhcc--C---CceEEEEEeecCch--------------------hhHHHHHHhCC
Confidence 78999999999999999999999998874 2 37788888875533 23679999999
Q ss_pred Cc-cceEEEecCCCCCCCcccccc
Q 013684 151 EG-IPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 151 ~~-~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.+ .|+++++. +|+++.+..
T Consensus 79 ~h~sPq~il~k----~G~~v~~~S 98 (112)
T 3iv4_A 79 KHESPQAFYFV----NGEMVWNRD 98 (112)
T ss_dssp CCCSSEEEEEE----TTEEEEEEE
T ss_pred ccCCCeEEEEE----CCEEEEEee
Confidence 95 99999997 898887643
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-10 Score=93.87 Aligned_cols=68 Identities=9% Similarity=0.039 Sum_probs=56.3
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++|+|+|||+||++|+.+.|.|.++++++. ++.++.|++|.. .+.|+|
T Consensus 23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~----~v~f~kvd~d~~---------------------------~~~~~v 71 (118)
T 3evi_A 23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFP----ETKFVKAIVNSC---------------------------IQHYHD 71 (118)
T ss_dssp TCEEEEEEECTTSHHHHHHHHHHHHHHHHCT----TSEEEEEEGGGT---------------------------STTCCG
T ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CCEEEEEEhHHh---------------------------HHHCCC
Confidence 4599999999999999999999999999873 377887766621 367999
Q ss_pred CccceEEEecCCCCCCCcccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.++||++++. +|+.+.+..
T Consensus 72 ~~~PT~~~fk----~G~~v~~~~ 90 (118)
T 3evi_A 72 NCLPTIFVYK----NGQIEAKFI 90 (118)
T ss_dssp GGCSEEEEEE----TTEEEEEEE
T ss_pred CCCCEEEEEE----CCEEEEEEe
Confidence 9999999997 888776643
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-10 Score=115.46 Aligned_cols=76 Identities=17% Similarity=0.238 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+|+++|+|||+||++|+.+.|.+.++++++++.. +++..+.+.++.|++|.. .+
T Consensus 41 ~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~--g~~~~~~v~f~~VD~d~~-----------------------~~ 95 (470)
T 3qcp_A 41 PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEH--GKDALQIATAAAVNCASE-----------------------VD 95 (470)
T ss_dssp GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSS--CSSGGGGCEEEEEETTTC-----------------------HH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhc--ccccCceEEEEEEECCCC-----------------------HH
Confidence 34899999999999999999999999999886320 000001488999988865 67
Q ss_pred HHHhcCcCceeeEEEECCCCc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGK 335 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~ 335 (438)
+++.|+|.++||+++++++|.
T Consensus 96 la~~y~V~~~PTlilf~~gg~ 116 (470)
T 3qcp_A 96 LCRKYDINFVPRLFFFYPRDS 116 (470)
T ss_dssp HHHHTTCCSSCEEEEEEESSC
T ss_pred HHHHcCCCccCeEEEEECCCc
Confidence 899999999999999976553
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.00 E-value=8.4e-10 Score=113.61 Aligned_cols=68 Identities=18% Similarity=0.421 Sum_probs=60.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|.|||+||++|+.+.|.+.++++.+++. ++.++.|+++.+ ..
T Consensus 30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~---------~v~~~~vd~~~~-----------------------~~ 77 (504)
T 2b5e_A 30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK---------NITLAQIDCTEN-----------------------QD 77 (504)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---------TCEEEEEETTTC-----------------------HH
T ss_pred cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccC---------CeEEEEEECCCC-----------------------HH
Confidence 4789999999999999999999999999998753 588999988765 67
Q ss_pred HHHhcCcCceeeEEEECCCCc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGK 335 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~ 335 (438)
+++.|+|.++||++++ ++|+
T Consensus 78 l~~~~~v~~~Pt~~~~-~~g~ 97 (504)
T 2b5e_A 78 LCMEHNIPGFPSLKIF-KNSD 97 (504)
T ss_dssp HHHHTTCCSSSEEEEE-ETTC
T ss_pred HHHhcCCCcCCEEEEE-eCCc
Confidence 9999999999999999 5566
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=107.40 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=59.7
Q ss_pred CCCEEEEEEecCCChhhhhhhHH-------HHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPK-------LLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~-------l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
.+++++|+|||+||+ |+.++|. +.++++.+++. ++.++.|+++.+
T Consensus 27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~---------~v~~~~Vd~~~~------------------ 78 (350)
T 1sji_A 27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHK---------DIGFVMVDAKKE------------------ 78 (350)
T ss_dssp TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGS---------SEEEEEEETTTT------------------
T ss_pred hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhc---------CcEEEEEeCCCC------------------
Confidence 468999999999999 9999999 78888777643 688999988765
Q ss_pred CCchhHHHHHhcCcCceeeEEEECCCCcEEE
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
..+++.|+|.++||++++ ++|++..
T Consensus 79 -----~~l~~~~~v~~~Pt~~~~-~~g~~~~ 103 (350)
T 1sji_A 79 -----AKLAKKLGFDEEGSLYVL-KGDRTIE 103 (350)
T ss_dssp -----HHHHHHHTCCSTTEEEEE-ETTEEEE
T ss_pred -----HHHHHhcCCCccceEEEE-ECCcEEE
Confidence 678999999999999999 7888553
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.9e-11 Score=94.51 Aligned_cols=71 Identities=23% Similarity=0.427 Sum_probs=58.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+++|+||++||++|+.+.|.+.++++++++ ++.++.|+.|.+ ..+++.|+
T Consensus 18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~~------------------------~~~~~~~~ 70 (106)
T 2yj7_A 18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG---KVKVVKVNVDEN------------------------PNTAAQYG 70 (106)
Confidence 578999999999999999999999999998864 266776665532 56788899
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.++|+++++ + +|+++.+
T Consensus 71 v~~~Pt~~~~-~---~g~~~~~ 88 (106)
T 2yj7_A 71 IRSIPTLLLF-K---NGQVVDR 88 (106)
Confidence 9999999999 6 8877654
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=5.6e-10 Score=85.29 Aligned_cols=60 Identities=23% Similarity=0.436 Sum_probs=51.8
Q ss_pred CEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC
Q 013684 72 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 151 (438)
Q Consensus 72 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 151 (438)
.++++.||++||++|+.+.|.|.++++++++ ++.++.|++|.+ .++++.|++.
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~v~ 55 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD---AVEVEYINVMEN------------------------PQKAMEYGIM 55 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS---SEEEEEEESSSS------------------------CCTTTSTTTC
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC---ceEEEEEECCCC------------------------HHHHHHCCCc
Confidence 5789999999999999999999999988753 488998888754 3456789999
Q ss_pred ccceEEE
Q 013684 152 GIPCLVV 158 (438)
Q Consensus 152 ~~P~~~l 158 (438)
++|++++
T Consensus 56 ~~Pt~~~ 62 (85)
T 1fo5_A 56 AVPTIVI 62 (85)
T ss_dssp CSSEEEE
T ss_pred ccCEEEE
Confidence 9999998
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-09 Score=94.70 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=56.8
Q ss_pred CCCEEEEEEec-------cCCccchhhHHHHHHHHHHHhcCC--CCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHH
Q 013684 70 EGKVTALYFSA-------NWYPPCGNFTGVLVDVYEELRNNG--SDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLET 140 (438)
Q Consensus 70 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~--~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~ 140 (438)
++.+|+|+||| .||++|+.+.|.|.++++++.... .++.+..|++|..
T Consensus 36 ~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~----------------------- 92 (178)
T 3ga4_A 36 PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEV----------------------- 92 (178)
T ss_dssp TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTC-----------------------
T ss_pred CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccC-----------------------
Confidence 35689999999 499999999999999999997220 1377777776654
Q ss_pred HHHHhhhcCcCccceEEEecC
Q 013684 141 KKALNRKFDIEGIPCLVVLQP 161 (438)
Q Consensus 141 ~~~l~~~~~v~~~P~~~lvd~ 161 (438)
.+++.+|+|+++||++++.+
T Consensus 93 -~~la~~~~I~siPtl~~F~~ 112 (178)
T 3ga4_A 93 -PQLVKDLKLQNVPHLVVYPP 112 (178)
T ss_dssp -HHHHHHTTCCSSCEEEEECC
T ss_pred -HHHHHHcCCCCCCEEEEEcC
Confidence 78999999999999999995
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=5.8e-10 Score=85.19 Aligned_cols=59 Identities=15% Similarity=0.285 Sum_probs=50.7
Q ss_pred EEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCc
Q 013684 73 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 152 (438)
Q Consensus 73 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 152 (438)
++++.||++||++|+.+.|.|.++++++++ ++.++.|++|.+ .++++.|++.+
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~v~~ 55 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD---KIDVEKIDIMVD------------------------REKAIEYGLMA 55 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCS---SCCEEEECTTTC------------------------GGGGGGTCSSC
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcC---CeEEEEEECCCC------------------------HHHHHhCCcee
Confidence 468999999999999999999999999864 378888877754 35678899999
Q ss_pred cceEEE
Q 013684 153 IPCLVV 158 (438)
Q Consensus 153 ~P~~~l 158 (438)
+|++++
T Consensus 56 ~Pt~~~ 61 (85)
T 1nho_A 56 VPAIAI 61 (85)
T ss_dssp SSEEEE
T ss_pred eCEEEE
Confidence 999998
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-10 Score=96.51 Aligned_cols=71 Identities=23% Similarity=0.445 Sum_probs=58.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.. ..+++.|+
T Consensus 35 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~------------------------~~~~~~~~ 86 (130)
T 1wmj_A 35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP----GAVFLKVDVDEL------------------------KEVAEKYN 86 (130)
T ss_dssp TTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT----TBCCEECCTTTS------------------------GGGHHHHT
T ss_pred cCCEEEEEEECCCChhHHHHHHHHHHHHHHCC----CCEEEEEeccch------------------------HHHHHHcC
Confidence 58999999999999999999999999999874 377777766543 45778899
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.++|+++++ + +|+++.+.
T Consensus 87 v~~~Pt~~~~-~---~g~~~~~~ 105 (130)
T 1wmj_A 87 VEAMPTFLFI-K---DGAEADKV 105 (130)
T ss_dssp CCSSCCCCBC-T---TTTCCBCC
T ss_pred CCccceEEEE-e---CCeEEEEE
Confidence 9999998887 5 88876553
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-11 Score=99.79 Aligned_cols=69 Identities=12% Similarity=0.297 Sum_probs=50.6
Q ss_pred EEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHH
Q 013684 63 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK 142 (438)
Q Consensus 63 ~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~ 142 (438)
.+++++..+|+++|+|||+|||+|+.+.|.|.+++++++ .|+++.+.. .+...
T Consensus 4 ~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~---------~v~~~~~~~------------------~~~~~ 56 (106)
T 3kp8_A 4 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP---------YVECSPNGP------------------GTPQA 56 (106)
T ss_dssp HHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC---------EEESCTTCT------------------TSCCC
T ss_pred hhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC---------EEEEecccc------------------cchhH
Confidence 456677778899999999999999999999998876542 333331100 00016
Q ss_pred HHhhhcCcCccceEEE
Q 013684 143 ALNRKFDIEGIPCLVV 158 (438)
Q Consensus 143 ~l~~~~~v~~~P~~~l 158 (438)
++++.|+|.++||+++
T Consensus 57 ~l~~~~~V~~~PT~~i 72 (106)
T 3kp8_A 57 QECTEAGITSYPTWII 72 (106)
T ss_dssp HHHHHTTCCSSSEEEE
T ss_pred HHHHHcCCeEeCEEEE
Confidence 7889999999999776
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.8e-09 Score=90.71 Aligned_cols=75 Identities=13% Similarity=0.303 Sum_probs=56.6
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 310 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 310 (438)
-.||+++|+|+++||++|+.+.... .++.+.+.+ ++.++.++.+...
T Consensus 40 ~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~----------~fv~v~~d~~~~~-------------------- 89 (153)
T 2dlx_A 40 MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE----------HFIFWQVYHDSEE-------------------- 89 (153)
T ss_dssp HHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH----------TEEEEEEESSSHH--------------------
T ss_pred HcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc----------CeEEEEEecCCHh--------------------
Confidence 3589999999999999999986554 345555544 3666666664321
Q ss_pred hhHHHHHhcCcCceeeEEEECCC-CcEEEc
Q 013684 311 TIKELTKYFDVQGIPCLVIIGPE-GKTVTK 339 (438)
Q Consensus 311 ~~~~l~~~~~v~~~P~~~lid~~-G~i~~~ 339 (438)
...+.+.|++.++|+++++|++ |+.+..
T Consensus 90 -~~~l~~~y~v~~~P~~~fld~~~G~~l~~ 118 (153)
T 2dlx_A 90 -GQRYIQFYKLGDFPYVSILDPRTGQKLVE 118 (153)
T ss_dssp -HHHHHHHHTCCSSSEEEEECTTTCCCCEE
T ss_pred -HHHHHHHcCCCCCCEEEEEeCCCCcEeee
Confidence 3678899999999999999998 866554
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=98.90 E-value=5.8e-09 Score=102.94 Aligned_cols=72 Identities=10% Similarity=0.059 Sum_probs=58.4
Q ss_pred CCCEEEEEEecCCChhhhhhh------HHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 013684 235 VGKTVGLYFSARWCIPCEKFM------PKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 308 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 308 (438)
.+++++|.|||+||++|.... |.+.++++.+++. ++.++.|+++..
T Consensus 29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~---------~v~~~~Vd~~~~------------------- 80 (367)
T 3us3_A 29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK---------GVGFGLVDSEKD------------------- 80 (367)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTT---------TEEEEEEETTTT-------------------
T ss_pred hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcC---------CceEEEEeCccc-------------------
Confidence 468999999999999973322 6788888888643 688888888765
Q ss_pred CchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 309 DPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 309 ~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..++++|+|+++||++++ ++|+.+..
T Consensus 81 ----~~l~~~~~V~~~PTl~~f-~~G~~~~y 106 (367)
T 3us3_A 81 ----AAVAKKLGLTEEDSIYVF-KEDEVIEY 106 (367)
T ss_dssp ----HHHHHHHTCCSTTEEEEE-ETTEEEEC
T ss_pred ----HHHHHHcCCCcCceEEEE-ECCcEEEe
Confidence 679999999999999999 57887643
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=98.89 E-value=7.5e-10 Score=94.10 Aligned_cols=70 Identities=13% Similarity=0.270 Sum_probs=50.3
Q ss_pred CCEEEEEEeccC--CccchhhHHHHHHHHHHHhcCCCCEE--EEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 71 GKVTALYFSANW--YPPCGNFTGVLVDVYEELRNNGSDFE--VVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 71 gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~--iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
++.++|+|+++| |++|+.+.|.|.++++++ + ++. ++.|++|. ..++++
T Consensus 34 ~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~---~v~~~~~~Vd~d~------------------------~~~la~ 85 (142)
T 2es7_A 34 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P---QFDWQVAVADLEQ------------------------SEAIGD 85 (142)
T ss_dssp CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T---TSCCEEEEECHHH------------------------HHHHHH
T ss_pred CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c---ccceeEEEEECCC------------------------CHHHHH
Confidence 456788999888 999999999999999987 3 266 77775552 268899
Q ss_pred hcCcCccceEEEecCCCCCCCccccc
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.|+|.++||++++ + +|+++.+.
T Consensus 86 ~~~V~~iPT~~~f-k---~G~~v~~~ 107 (142)
T 2es7_A 86 RFNVRRFPATLVF-T---DGKLRGAL 107 (142)
T ss_dssp TTTCCSSSEEEEE-S---CC----CE
T ss_pred hcCCCcCCeEEEE-e---CCEEEEEE
Confidence 9999999999999 6 89877654
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-09 Score=109.72 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=58.1
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCC-----CEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHH
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGS-----DFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 144 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~-----~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 144 (438)
.+|+|+|+|||+||++|+.+.|.|.++++++++... ++.++.|++|.. .++
T Consensus 41 ~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~------------------------~~l 96 (470)
T 3qcp_A 41 PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASE------------------------VDL 96 (470)
T ss_dssp GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTC------------------------HHH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCC------------------------HHH
Confidence 348999999999999999999999999999875421 378888877644 678
Q ss_pred hhhcCcCccceEEEecC
Q 013684 145 NRKFDIEGIPCLVVLQP 161 (438)
Q Consensus 145 ~~~~~v~~~P~~~lvd~ 161 (438)
++.|+|.++||++++++
T Consensus 97 a~~y~V~~~PTlilf~~ 113 (470)
T 3qcp_A 97 CRKYDINFVPRLFFFYP 113 (470)
T ss_dssp HHHTTCCSSCEEEEEEE
T ss_pred HHHcCCCccCeEEEEEC
Confidence 99999999999999986
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-10 Score=93.65 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=54.7
Q ss_pred cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhc
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 148 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 148 (438)
-+...+||+|||+||++|+.+.+.+...++..... ..+.++.|+++.+.. ..++..|
T Consensus 16 ~~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~-~~~~l~~vdv~~~~~----------------------~~la~~~ 72 (116)
T 3dml_A 16 DKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEG-RAAPVQRLQMRDPLP----------------------PGLELAR 72 (116)
T ss_dssp ---CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHH-HHSCEEEEETTSCCC----------------------TTCBCSS
T ss_pred ccCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhc-ccceEEEEECCCCCc----------------------hhHHHHC
Confidence 34578999999999999999988766544331110 126688888876522 3566789
Q ss_pred CcCccceEEEecCCCCCCCccccc
Q 013684 149 DIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 149 ~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+|.++||+++++ +|+.+.+-
T Consensus 73 ~V~g~PT~i~f~----~G~ev~Ri 92 (116)
T 3dml_A 73 PVTFTPTFVLMA----GDVESGRL 92 (116)
T ss_dssp CCCSSSEEEEEE----TTEEEEEE
T ss_pred CCCCCCEEEEEE----CCEEEeee
Confidence 999999999998 88777653
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-09 Score=100.17 Aligned_cols=70 Identities=10% Similarity=0.155 Sum_probs=57.3
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++|||+|||+||++|+.+.|.|.++++++. ++.++.|+++. ..++..|+
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~----~v~f~kVd~d~-------------------------~~l~~~~~ 182 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP----MVKFCKIKASN-------------------------TGAGDRFS 182 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT----TSEEEEEEHHH-------------------------HCCTTSSC
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC----CCEEEEEeCCc-------------------------HHHHHHCC
Confidence 47999999999999999999999999999874 37777776542 23567899
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|.++||++++. +|.++.+.
T Consensus 183 I~~~PTll~~~----~G~~v~~~ 201 (245)
T 1a0r_P 183 SDVLPTLLVYK----GGELLSNF 201 (245)
T ss_dssp TTTCSEEEEEE----TTEEEEEE
T ss_pred CCCCCEEEEEE----CCEEEEEE
Confidence 99999998886 88877543
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-09 Score=99.12 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=57.6
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+|++|+|+||++||++|+.+.|.|.++++++. ++.++.|+++ . ..++..|+
T Consensus 119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~----~v~f~~vd~~---~----------------------~~l~~~~~ 169 (217)
T 2trc_P 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP----MVKFCKIRAS---N----------------------TGAGDRFS 169 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT----TSEEEEEEHH---H----------------------HTCSTTSC
T ss_pred CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC----CeEEEEEECC---c----------------------HHHHHHCC
Confidence 45899999999999999999999999998873 3778877655 1 45677899
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++||++++. +|.++.+
T Consensus 170 i~~~PTl~~~~----~G~~v~~ 187 (217)
T 2trc_P 170 SDVLPTLLVYK----GGELISN 187 (217)
T ss_dssp GGGCSEEEEEE----TTEEEEE
T ss_pred CCCCCEEEEEE----CCEEEEE
Confidence 99999999996 8887654
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.8e-09 Score=96.02 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=55.4
Q ss_pred ccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCC-CCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 68 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNG-SDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 68 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~-~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
++.|+++++.|||+|||+|+.+.|.|.+++.+++..+ .++.+..|+.+.. .++++
T Consensus 135 ~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~------------------------~~~~~ 190 (243)
T 2hls_A 135 SLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYEN------------------------PDIAD 190 (243)
T ss_dssp HCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTC------------------------HHHHH
T ss_pred HcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccC------------------------HHHHH
Confidence 4678899999999999999999999999999985311 2488877766543 56788
Q ss_pred hcCcCccceEEE
Q 013684 147 KFDIEGIPCLVV 158 (438)
Q Consensus 147 ~~~v~~~P~~~l 158 (438)
.|+|.++|++++
T Consensus 191 ~~~V~~vPt~~i 202 (243)
T 2hls_A 191 KYGVMSVPSIAI 202 (243)
T ss_dssp HTTCCSSSEEEE
T ss_pred HcCCeeeCeEEE
Confidence 999999999988
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=76.51 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=46.3
Q ss_pred EEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCcc
Q 013684 74 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI 153 (438)
Q Consensus 74 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~ 153 (438)
+.|+||++||++|+.+.|.+.+++++++. ++.++.|+ + .++++.|+|.++
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~---~~~~~~v~---~------------------------~~~~~~~~v~~~ 51 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELGI---DAEFEKIK---E------------------------MDQILEAGLTAL 51 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTTC---CEEEEEEC---S------------------------HHHHHHHTCSSS
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcCC---ceEEEEec---C------------------------HHHHHHCCCCcC
Confidence 46899999999999999999999988753 37777664 1 577889999999
Q ss_pred ceEEE
Q 013684 154 PCLVV 158 (438)
Q Consensus 154 P~~~l 158 (438)
|++++
T Consensus 52 Pt~~~ 56 (77)
T 1ilo_A 52 PGLAV 56 (77)
T ss_dssp SCEEE
T ss_pred CEEEE
Confidence 99998
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.9e-08 Score=84.15 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=33.4
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHH
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIK 266 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~ 266 (438)
...+.+..++++++.||.+|||+|..+.|.+.++.++++
T Consensus 14 ~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~ 52 (175)
T 3gyk_A 14 APVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP 52 (175)
T ss_dssp SCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT
T ss_pred CCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCC
Confidence 345666778999999999999999999999999887754
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-08 Score=80.88 Aligned_cols=65 Identities=22% Similarity=0.435 Sum_probs=53.8
Q ss_pred EEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 013684 238 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 317 (438)
Q Consensus 238 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 317 (438)
.+++.||++||++|+...+.|.++.+++ ++.+..|++|.+ .++.+
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~------------~i~~~~vDId~d-----------------------~~l~~ 74 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKS------------WFELEVINIDGN-----------------------EHLTR 74 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHS------------CCCCEEEETTTC-----------------------HHHHH
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhc------------CCeEEEEECCCC-----------------------HHHHH
Confidence 5688999999999999999999987764 367888888866 45778
Q ss_pred hcCcCceeeEEEECCCCcEEEc
Q 013684 318 YFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 318 ~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.||+. +|+++++ .+|+.+..
T Consensus 75 ~ygv~-VP~l~~~-~dG~~v~~ 94 (107)
T 2fgx_A 75 LYNDR-VPVLFAV-NEDKELCH 94 (107)
T ss_dssp HSTTS-CSEEEET-TTTEEEEC
T ss_pred HhCCC-CceEEEE-ECCEEEEe
Confidence 89997 9999888 68988743
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-07 Score=86.53 Aligned_cols=93 Identities=19% Similarity=0.266 Sum_probs=61.1
Q ss_pred eeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---CH---------------
Q 013684 229 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQ--------------- 290 (438)
Q Consensus 229 ~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~~--------------- 290 (438)
+.+....||++++.||++|||+|+++.|.+.++.+. ++.|+.+.... ..
T Consensus 79 ~~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~-------------~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~ 145 (216)
T 1eej_A 79 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL-------------GITVRYLAFPRQGLDSDAEKEMKAIWCAKDK 145 (216)
T ss_dssp EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT-------------TEEEEEEECCTTCSSSHHHHHHHHHHTSSSH
T ss_pred eeecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhC-------------CcEEEEEECCccCCCchHHHHHHHHHhccCH
Confidence 444555688999999999999999999998887542 36777765431 11
Q ss_pred -HHHHHHHhcCCCcc---cccCCchhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 291 -TSFESYFGTMPWLA---LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 291 -~~~~~~~~~~~~~~---~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
..|..++...+ +. .....+....+.+.|||.++||+++. +|+.+
T Consensus 146 ~~~~~~~~~~~~-~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~--dG~~~ 193 (216)
T 1eej_A 146 NKAFDDVMAGKS-VAPASCDVDIADHYALGVQLGVSGTPAVVLS--NGTLV 193 (216)
T ss_dssp HHHHHHHHTTCC-CCCCCCSCCHHHHHHHHHHHTCCSSSEEECT--TSCEE
T ss_pred HHHHHHHHhCCC-CChhHHHHHHHHHHHHHHHcCCCccCEEEEc--CCeEe
Confidence 12333333322 11 22334566789999999999998543 56543
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.72 E-value=3.4e-08 Score=84.76 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=56.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
+||+|+|+|+++||..|+.+.... .++.+.+++ ++.++.++++... ...+.+
T Consensus 41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~---~fv~v~~d~~~~~----------------------~~~l~~ 95 (153)
T 2dlx_A 41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE---HFIFWQVYHDSEE----------------------GQRYIQ 95 (153)
T ss_dssp HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH---TEEEEEEESSSHH----------------------HHHHHH
T ss_pred cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc---CeEEEEEecCCHh----------------------HHHHHH
Confidence 589999999999999999986544 344455543 3777777665321 167889
Q ss_pred hcCcCccceEEEecCCCCC-CCcccc
Q 013684 147 KFDIEGIPCLVVLQPYDDK-DDATLH 171 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~-G~v~~~ 171 (438)
.|++.++|+++++|+ + |+.+..
T Consensus 96 ~y~v~~~P~~~fld~---~~G~~l~~ 118 (153)
T 2dlx_A 96 FYKLGDFPYVSILDP---RTGQKLVE 118 (153)
T ss_dssp HHTCCSSSEEEEECT---TTCCCCEE
T ss_pred HcCCCCCCEEEEEeC---CCCcEeee
Confidence 999999999999999 7 766543
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-08 Score=83.93 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=56.9
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++++||++ |++|+.+.|.+.+++++|+++ +.++.|++|.. ..+
T Consensus 23 ~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk----------~~f~~vd~d~~-----------------------~~~ 68 (133)
T 2djk_A 23 GIPLAYIFAET-AEERKELSDKLKPIAEAQRGV----------INFGTIDAKAF-----------------------GAH 68 (133)
T ss_dssp TSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT----------SEEEEECTTTT-----------------------GGG
T ss_pred CCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe----------EEEEEEchHHh-----------------------HHH
Confidence 56899999999 899999999999999998764 77888887754 567
Q ss_pred HHhcCcCc--eeeEEEECC-CCcE
Q 013684 316 TKYFDVQG--IPCLVIIGP-EGKT 336 (438)
Q Consensus 316 ~~~~~v~~--~P~~~lid~-~G~i 336 (438)
++.|||++ +||+++++. +|+.
T Consensus 69 a~~~gi~~~~iPtl~i~~~~~g~~ 92 (133)
T 2djk_A 69 AGNLNLKTDKFPAFAIQEVAKNQK 92 (133)
T ss_dssp TTTTTCCSSSSSEEEEECTTTCCB
T ss_pred HHHcCCCcccCCEEEEEecCcCcc
Confidence 89999999 999999964 4666
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=87.84 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=56.1
Q ss_pred CCCEEEEEEe--cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 235 VGKTVGLYFS--ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 235 ~gk~vll~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
.+++|+|.|| |+||+ +.|.|.++++.+.+. .+++.|+.|++|... ...+
T Consensus 32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~-------~~~v~~akVD~d~~g------------------~~~n 82 (248)
T 2c0g_A 32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKA-------TKDLLIATVGVKDYG------------------ELEN 82 (248)
T ss_dssp TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHH-------CSSEEEEEEEECSST------------------TCTT
T ss_pred cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhcc-------CCCeEEEEEECCccc------------------cccc
Confidence 4689999999 99998 999999999999752 136889999887510 0002
Q ss_pred HHHHHhcCcC--ceeeEEEECCCCc
Q 013684 313 KELTKYFDVQ--GIPCLVIIGPEGK 335 (438)
Q Consensus 313 ~~l~~~~~v~--~~P~~~lid~~G~ 335 (438)
.++++.|+|. ++||++++ + |+
T Consensus 83 ~~la~~~~V~~~~~PTl~~F-~-G~ 105 (248)
T 2c0g_A 83 KALGDRYKVDDKNFPSIFLF-K-GN 105 (248)
T ss_dssp HHHHHHTTCCTTSCCEEEEE-S-SS
T ss_pred HHHHHHhCCCcCCCCeEEEE-e-CC
Confidence 6799999999 99999999 5 76
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-08 Score=76.54 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=48.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.||++|||+|+...+.+.++.+++ ++.+..+.+|.+. ...++.+.|
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~------------~~~~~~~~v~~~~--------------------~~~~~~~~~ 51 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPS------------KYTVEIVHLGTDK--------------------ARIAEAEKA 51 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTT------------TEEEEEEETTTCS--------------------STHHHHHHH
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhc------------CCeEEEEEecCCh--------------------hhHHHHHHc
Confidence 67799999999999999998876543 3455566665321 025677889
Q ss_pred CcCceeeEEEECCCCcEEEc
Q 013684 320 DVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~~~ 339 (438)
|+.++|++++ +|+++..
T Consensus 52 gv~~vPt~~i---~g~~~~~ 68 (80)
T 2k8s_A 52 GVKSVPALVI---DGAAFHI 68 (80)
T ss_dssp TCCEEEEEEE---TTEEEEE
T ss_pred CCCcCCEEEE---CCEEEEe
Confidence 9999999876 7887654
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.8e-08 Score=76.79 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=45.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.||++||++|+...|.|.++..+ . +..|++|.+ .++.+.|
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~--------------~-~~~vdid~~-----------------------~~l~~~~ 44 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAG--------------A-FFSVFIDDD-----------------------AALESAY 44 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCC--------------C-EEEEECTTC-----------------------HHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHHHHHh--------------h-eEEEECCCC-----------------------HHHHHHh
Confidence 6789999999999999988765321 1 466777765 5678889
Q ss_pred CcCceeeEEEECCCCcEEE
Q 013684 320 DVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~~ 338 (438)
|++ +|++++ .+|+.+.
T Consensus 45 g~~-vPtl~~--~~G~~v~ 60 (87)
T 1ttz_A 45 GLR-VPVLRD--PMGRELD 60 (87)
T ss_dssp TTT-CSEEEC--TTCCEEE
T ss_pred CCC-cCeEEE--ECCEEEe
Confidence 998 999887 7898874
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=84.92 Aligned_cols=43 Identities=26% Similarity=0.239 Sum_probs=37.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.++++++.||++|||+|+.+.|.+.++.+++.+ ++.++.+.++
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~----------~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ----------DVVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT----------TEEEEEEECC
T ss_pred CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC----------CeEEEEEecc
Confidence 579999999999999999999999998887764 4788888875
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-07 Score=82.91 Aligned_cols=43 Identities=26% Similarity=0.381 Sum_probs=36.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.++++++.||.+|||+|..+.|.+.++.++++. ++.+..+.+.
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~----------~v~~~~~p~~ 63 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS----------DAYLRTEHVV 63 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT----------TEEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC----------ceEEEEeccc
Confidence 578999999999999999999999998887753 4777777753
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-07 Score=83.25 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=36.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.++++++.||.+|||+|..+.|.+.++.+++.+ ++.+..+.+.
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~----------~v~~~~~p~~ 66 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA----------DVHFVRLPAL 66 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT----------TEEEEEEECC
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC----------CeEEEEEehh
Confidence 578999999999999999999999988887754 4777766653
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.50 E-value=7.5e-08 Score=78.16 Aligned_cols=68 Identities=21% Similarity=0.363 Sum_probs=47.0
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
++.+++ ||++|||+|+.+.|.|.++.. .+.++-|+.+.+.... ...+
T Consensus 19 ~~~vv~-f~a~~C~~C~~~~~~l~~~~~--------------~~~~v~v~~~~~~~~~------------------~~~l 65 (116)
T 2e7p_A 19 SAPVVV-FSKTYCGYCNRVKQLLTQVGA--------------SYKVVELDELSDGSQL------------------QSAL 65 (116)
T ss_dssp SSSEEE-EECTTCHHHHHHHHHHHHHTC--------------CCEEEEGGGSTTHHHH------------------HHHH
T ss_pred CCCEEE-EECCCChhHHHHHHHHHHcCC--------------CeEEEEccCCCChHHH------------------HHHH
Confidence 445655 999999999999998877532 2445555444332111 2568
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+.|++.++|++ ++ +|+++..
T Consensus 66 ~~~~~v~~~Pt~-~~--~g~~v~~ 86 (116)
T 2e7p_A 66 AHWTGRGTVPNV-FI--GGKQIGG 86 (116)
T ss_dssp HHHHSCCSSCEE-EE--TTEEEEC
T ss_pred HHHhCCCCcCEE-EE--CCEEECC
Confidence 889999999999 45 6888764
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=98.48 E-value=3e-07 Score=70.05 Aligned_cols=66 Identities=15% Similarity=0.301 Sum_probs=49.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|+++|||+|+...+.|.++.++++ ++.+..++++.+.+ ...++.+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-----------~i~~~~vdi~~~~~-------------------~~~~l~~~~ 52 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKDLAEKLSNERD-----------DFQYQYVDIRAEGI-------------------TKEDLQQKA 52 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS-----------SCEEEEECHHHHTC-------------------CSHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCC-----------CceEEEEecccChH-------------------HHHHHHHHh
Confidence 677999999999999999999887653 57788887753210 014678888
Q ss_pred C--cCceeeEEEECCCCcEEE
Q 013684 320 D--VQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 320 ~--v~~~P~~~lid~~G~i~~ 338 (438)
| +.++|+++ + +|+.+.
T Consensus 53 ~~~~~~vP~i~-~--~g~~i~ 70 (85)
T 1ego_A 53 GKPVETVPQIF-V--DQQHIG 70 (85)
T ss_dssp CCCSCCSCEEE-E--TTEEEE
T ss_pred CCCCceeCeEE-E--CCEEEE
Confidence 8 99999984 4 677764
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=98.46 E-value=6.8e-07 Score=82.48 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=55.6
Q ss_pred CCCEEEEEEec--CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 235 VGKTVGLYFSA--RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 235 ~gk~vll~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
.+++|+|.||| +||+ +.|.|.++++.+.+. +++.|+.|++|... .+.+
T Consensus 21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~--------~~v~~akVDvd~~g------------------~~~~ 70 (240)
T 2qc7_A 21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASS--------DDLLVAEVGISDYG------------------DKLN 70 (240)
T ss_dssp GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTC--------TTEEEEEECCCCSS------------------SCCS
T ss_pred CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCC--------CCeEEEEEeCCccc------------------chhh
Confidence 36799999999 9999 999999999998642 36888888866300 0013
Q ss_pred HHHHHhcCcC--ceeeEEEECCCCc
Q 013684 313 KELTKYFDVQ--GIPCLVIIGPEGK 335 (438)
Q Consensus 313 ~~l~~~~~v~--~~P~~~lid~~G~ 335 (438)
..+++.|+|. ++||++++ ++|+
T Consensus 71 ~~l~~~~~V~~~~~PTl~~f-~~G~ 94 (240)
T 2qc7_A 71 MELSEKYKLDKESYPVFYLF-RDGD 94 (240)
T ss_dssp HHHHHHTTCCGGGCSEEEEE-ETTC
T ss_pred HHHHHHcCCCCCCCCEEEEE-eCCC
Confidence 7899999999 99999999 6776
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-07 Score=74.91 Aligned_cols=63 Identities=16% Similarity=0.297 Sum_probs=51.0
Q ss_pred EEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCc
Q 013684 73 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 152 (438)
Q Consensus 73 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 152 (438)
.+++.||++||++|+...|.|.++.+++ + +.+..|++|.+ .++..+|+++
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~---~--i~~~~vDId~d------------------------~~l~~~ygv~- 79 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKS---W--FELEVINIDGN------------------------EHLTRLYNDR- 79 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHS---C--CCCEEEETTTC------------------------HHHHHHSTTS-
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhc---C--CeEEEEECCCC------------------------HHHHHHhCCC-
Confidence 5799999999999999999999988874 2 66667777755 4567789997
Q ss_pred cceEEEecCCCCCCCcc
Q 013684 153 IPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 153 ~P~~~lvd~~~~~G~v~ 169 (438)
+|+++++. +|+.+
T Consensus 80 VP~l~~~~----dG~~v 92 (107)
T 2fgx_A 80 VPVLFAVN----EDKEL 92 (107)
T ss_dssp CSEEEETT----TTEEE
T ss_pred CceEEEEE----CCEEE
Confidence 99998876 67655
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.41 E-value=6.2e-07 Score=81.50 Aligned_cols=88 Identities=18% Similarity=0.258 Sum_probs=58.0
Q ss_pred EeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC---CH----------------HHHHHh
Q 013684 64 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---DL----------------NAFNNY 124 (438)
Q Consensus 64 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~---~~----------------~~~~~~ 124 (438)
+.+...++|++++.||++|||+|+++.|.|.++.+ .+ ++++++.+.. .. ..|.++
T Consensus 79 ~~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~----~~--v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~ 152 (216)
T 1eej_A 79 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNA----LG--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDV 152 (216)
T ss_dssp EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHH
T ss_pred eeecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHh----CC--cEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHH
Confidence 44555678999999999999999999999988754 23 7777765421 11 123333
Q ss_pred HhcCCcc--cccCCChHHHHHHhhhcCcCccceEEE
Q 013684 125 RACMPWL--AVPYSDLETKKALNRKFDIEGIPCLVV 158 (438)
Q Consensus 125 ~~~~~~~--~~~~~d~~~~~~l~~~~~v~~~P~~~l 158 (438)
+...+.. ... ...+....+++.|+|.++|++++
T Consensus 153 ~~~~~~~~~~~~-~~v~~~~~l~~~~gV~gtPt~v~ 187 (216)
T 1eej_A 153 MAGKSVAPASCD-VDIADHYALGVQLGVSGTPAVVL 187 (216)
T ss_dssp HTTCCCCCCCCS-CCHHHHHHHHHHHTCCSSSEEEC
T ss_pred HhCCCCChhHHH-HHHHHHHHHHHHcCCCccCEEEE
Confidence 3322211 111 13344578999999999999854
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=6.8e-07 Score=70.80 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=47.5
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
.+++++.|+++|||+|+...+.|.++.+ ++.+..|++|... ..++
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~--------------~i~~~~vdi~~~~---------------------~~el 59 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD--------------RFILQEVDITLPE---------------------NSTW 59 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSS--------------SSEEEEEETTSST---------------------THHH
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhhh--------------CCeEEEEECCCcc---------------------hHHH
Confidence 4568888999999999999998876532 3678888887221 2678
Q ss_pred HHhcCcCceeeEEEECCCCcEE
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~ 337 (438)
.+.|| .++|+++ + +|+.+
T Consensus 60 ~~~~g-~~vP~l~-~--~g~~~ 77 (100)
T 1wjk_A 60 YERYK-FDIPVFH-L--NGQFL 77 (100)
T ss_dssp HHHSS-SSCSEEE-E--SSSEE
T ss_pred HHHHC-CCCCEEE-E--CCEEE
Confidence 88999 9999764 4 57665
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=98.36 E-value=2e-06 Score=76.31 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=35.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
.++++++.||.++||+|..+.+.+.++.+++.+ ++.+..+.+
T Consensus 24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~----------~v~~~~~p~ 65 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK----------DVRFTLVPA 65 (193)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT----------TEEEEEEEC
T ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC----------ceEEEEeCc
Confidence 578899999999999999999999988877653 477777765
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=98.35 E-value=5.7e-06 Score=75.62 Aligned_cols=171 Identities=12% Similarity=0.107 Sum_probs=103.5
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|-|+++| |....+.+.++++.+. ++.+..+ .+ .++++.|+
T Consensus 26 ~~~v~vVgff~~~---~~~~~~~f~~~A~~l~----~~~F~~t-~~--------------------------~~v~~~~~ 71 (227)
T 4f9z_D 26 ATEVAVIGFFQDL---EIPAVPILHSMVQKFP----GVSFGIS-TD--------------------------SEVLTHYN 71 (227)
T ss_dssp TSSEEEEEECSCS---CSTHHHHHHHHTTTCT----TSEEEEE-CC--------------------------HHHHHHTT
T ss_pred cCCeEEEEEecCC---CchhHHHHHHHHHhCC----CceEEEE-CC--------------------------HHHHHHcC
Confidence 3579999999998 4568888888888872 2544432 11 56788899
Q ss_pred cCccceEEEecCCCCCCC--cccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCCCccCCCCCc
Q 013684 150 IEGIPCLVVLQPYDDKDD--ATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDE 227 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~--v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~f~l~~~g~~ 227 (438)
+.. |+++++.+ ... ..+. +. . .+ +.+.+.+..+.... ..|-+. ..+..
T Consensus 72 v~~-p~i~lfk~---~~~~~~~~~-~~-~---~g----~~~~~~l~~fi~~~---------------~~plv~-e~t~~- 121 (227)
T 4f9z_D 72 ITG-NTICLFRL---VDNEQLNLE-DE-D---IE----SIDATKLSRFIEIN---------------SLHMVT-EYNPV- 121 (227)
T ss_dssp CCS-SEEEEEET---TTTEEEEEC-HH-H---HH----TCCHHHHHHHHHHH---------------CCCSEE-ECCHH-
T ss_pred CCC-CeEEEEEe---cCccccccc-cc-c---cC----CCCHHHHHHHHHHh---------------CCCcee-ecCcc-
Confidence 997 99999885 221 1111 00 0 00 12223333222211 112111 11111
Q ss_pred eeeccccCC-CEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccc
Q 013684 228 KVPVSSLVG-KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALP 306 (438)
Q Consensus 228 ~~~l~~~~g-k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p 306 (438)
.+..---.+ +.+++.|..+||+.|....+.+.+++++++++ +.++.+..+...
T Consensus 122 n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~----------i~F~~vd~~~~~---------------- 175 (227)
T 4f9z_D 122 TVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGK----------ILFILVDSGMKE---------------- 175 (227)
T ss_dssp HHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTT----------CEEEEEETTSGG----------------
T ss_pred cHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCC----------EEEEEeCCccHh----------------
Confidence 110000123 35666677889999999999999999999864 677777766321
Q ss_pred cCCchhHHHHHhcCcC--ceeeEEEECCCCc
Q 013684 307 FGDPTIKELTKYFDVQ--GIPCLVIIGPEGK 335 (438)
Q Consensus 307 ~~~d~~~~l~~~~~v~--~~P~~~lid~~G~ 335 (438)
.+.+.+.||+. .+|++.+++..+.
T Consensus 176 -----~~~~l~~fgl~~~~~P~~~i~~~~~~ 201 (227)
T 4f9z_D 176 -----NGKVISFFKLKESQLPALAIYQTLDD 201 (227)
T ss_dssp -----GHHHHHHTTCCGGGCSEEEEEESSSC
T ss_pred -----HHHHHHHcCCCcccCCEEEEEECCCC
Confidence 24567889998 8999999986554
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.8e-07 Score=76.22 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=53.3
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++|+++|||+ |++|+.+.|.|.+++++++++ +.++.|++|.. ..++..||
T Consensus 22 ~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk---~~f~~vd~d~~------------------------~~~a~~~g 73 (133)
T 2djk_A 22 AGIPLAYIFAET-AEERKELSDKLKPIAEAQRGV---INFGTIDAKAF------------------------GAHAGNLN 73 (133)
T ss_dssp TTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT---SEEEEECTTTT------------------------GGGTTTTT
T ss_pred CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe---EEEEEEchHHh------------------------HHHHHHcC
Confidence 357899999999 899999999999999998654 77777776633 45788899
Q ss_pred cCc--cceEEEec
Q 013684 150 IEG--IPCLVVLQ 160 (438)
Q Consensus 150 v~~--~P~~~lvd 160 (438)
|+. +|++++++
T Consensus 74 i~~~~iPtl~i~~ 86 (133)
T 2djk_A 74 LKTDKFPAFAIQE 86 (133)
T ss_dssp CCSSSSSEEEEEC
T ss_pred CCcccCCEEEEEe
Confidence 999 99999998
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.1e-07 Score=71.77 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=43.3
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.||++||++|+...|.|.++..++ +..|++|.+ .++.++|+++ +|
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~--------~~~vdid~~------------------------~~l~~~~g~~-vP 49 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGA--------FFSVFIDDD------------------------AALESAYGLR-VP 49 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCC--------EEEEECTTC------------------------HHHHHHHTTT-CS
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhh--------eEEEECCCC------------------------HHHHHHhCCC-cC
Confidence 78899999999999999887643321 345666654 5677889998 99
Q ss_pred eEEEecCCCCCCCcc
Q 013684 155 CLVVLQPYDDKDDAT 169 (438)
Q Consensus 155 ~~~lvd~~~~~G~v~ 169 (438)
++++ . +|+.+
T Consensus 50 tl~~--~---~G~~v 59 (87)
T 1ttz_A 50 VLRD--P---MGREL 59 (87)
T ss_dssp EEEC--T---TCCEE
T ss_pred eEEE--E---CCEEE
Confidence 9887 5 77766
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.8e-07 Score=68.92 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=43.2
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.||++|||+|+.+.|.|.++.+++ + +.+..+.+|.+.+ + .++.+.|++.++|
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~---~--~~~~~~~v~~~~~-----------------~----~~~~~~~gv~~vP 57 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPS---K--YTVEIVHLGTDKA-----------------R----IAEAEKAGVKSVP 57 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTT---T--EEEEEEETTTCSS-----------------T----HHHHHHHTCCEEE
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhc---C--CeEEEEEecCChh-----------------h----HHHHHHcCCCcCC
Confidence 67899999999999999988876553 2 5555666664311 0 4667889999999
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
++++
T Consensus 58 t~~i 61 (80)
T 2k8s_A 58 ALVI 61 (80)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9876
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.34 E-value=2.4e-07 Score=75.13 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=44.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+++.+++ ||++|||+|+.+.|.|.++.. .+.++.|+.+.... .....+.+.|+
T Consensus 18 ~~~~vv~-f~a~~C~~C~~~~~~l~~~~~-------~~~~v~v~~~~~~~-------------------~~~~~l~~~~~ 70 (116)
T 2e7p_A 18 SSAPVVV-FSKTYCGYCNRVKQLLTQVGA-------SYKVVELDELSDGS-------------------QLQSALAHWTG 70 (116)
T ss_dssp TSSSEEE-EECTTCHHHHHHHHHHHHHTC-------CCEEEEGGGSTTHH-------------------HHHHHHHHHHS
T ss_pred cCCCEEE-EECCCChhHHHHHHHHHHcCC-------CeEEEEccCCCChH-------------------HHHHHHHHHhC
Confidence 3456666 999999999999998877632 24444333332211 11257888999
Q ss_pred cCccceEEEecCCCCCCCccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~ 170 (438)
+.++|++ ++ +|+.+.
T Consensus 71 v~~~Pt~-~~-----~g~~v~ 85 (116)
T 2e7p_A 71 RGTVPNV-FI-----GGKQIG 85 (116)
T ss_dssp CCSSCEE-EE-----TTEEEE
T ss_pred CCCcCEE-EE-----CCEEEC
Confidence 9999999 33 555553
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-06 Score=76.98 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=37.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
.++++++.||++|||+|+.+.|.|.++.+++.+ ++.+..++++
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ---DVVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT---TEEEEEEECC
T ss_pred CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC---CeEEEEEecc
Confidence 579999999999999999999999999888754 3888888875
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-06 Score=76.52 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=39.3
Q ss_pred CCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 61 g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
+....+....++++++.||.+|||+|+.+.|.|.++.+++. ++.++++.+
T Consensus 12 ~~~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~----~v~~~~~~~ 61 (175)
T 3gyk_A 12 PNAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP----NVRLVYREW 61 (175)
T ss_dssp TTSCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TEEEEEEEC
T ss_pred CCCCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCC----CEEEEEEeC
Confidence 33455666778999999999999999999999999888753 256666553
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.31 E-value=3.1e-06 Score=78.21 Aligned_cols=96 Identities=9% Similarity=0.109 Sum_probs=60.7
Q ss_pred eeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC---CCHH-------------H
Q 013684 229 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD---RDQT-------------S 292 (438)
Q Consensus 229 ~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d---~~~~-------------~ 292 (438)
+.+....++++++.|+.+|||+|+++.+.+.++.+. + ++.|+.+.+. .+.. .
T Consensus 90 i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g----------~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~ 157 (241)
T 1v58_A 90 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS--G----------KVQLRTLLVGVIKPESPATAAAILASKDPAK 157 (241)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT--T----------SEEEEEEECCCSSTTHHHHHHHHHHSSSHHH
T ss_pred ceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC--C----------cEEEEEEECCcCCCcHHHHHHHHHHccCHHH
Confidence 444444578999999999999999999998876553 1 4777766652 1111 1
Q ss_pred -HHHHHhcCC--Ccc--------cccCCchhHHHHHhcCcCceeeEEEECCCCcE
Q 013684 293 -FESYFGTMP--WLA--------LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 293 -~~~~~~~~~--~~~--------~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i 336 (438)
|..+...+. .+. .....+.+.++.+.+||+++|++++.|.+|++
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~ 212 (241)
T 1v58_A 158 TWQQYEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL 212 (241)
T ss_dssp HHHHHHHTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred HHHHHHHHhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 111111110 000 00012345678899999999999999888975
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.9e-06 Score=78.06 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=54.5
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---CH----------------HHHHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQ----------------TSFES 295 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~~----------------~~~~~ 295 (438)
.++++++.||++|||+|+++.|.+.++.+ . ++.|..+.... .. ..|..
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~---------~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~ 151 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHLLHQQLKEYND----L---------GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNE 151 (211)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHH----T---------TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHH
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHh----C---------CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHH
Confidence 47899999999999999999999887543 2 36666554421 11 11222
Q ss_pred HHhcCCCcc---cccCCchhHHHHHhcCcCceeeEEEECCCCc
Q 013684 296 YFGTMPWLA---LPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 335 (438)
Q Consensus 296 ~~~~~~~~~---~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~ 335 (438)
++...+ +. .....+.+.++.+.+||+++||+++ .+|+
T Consensus 152 ~~~~~~-~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~ 191 (211)
T 1t3b_A 152 AEKGNL-PKEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGE 191 (211)
T ss_dssp HHTTCC-CSSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSC
T ss_pred HHcCCC-CChHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCE
Confidence 222111 11 1112235678899999999999887 4676
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-06 Score=89.29 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=58.2
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
..++..++.||++|||+|+.+.|.++++...+. ++.+..|+.+.. +
T Consensus 115 ~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-----------~v~~~~vd~~~~-----------------------~ 160 (521)
T 1hyu_A 115 IDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-----------RIKHTAIDGGTF-----------------------Q 160 (521)
T ss_dssp CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-----------TEEEEEEETTTC-----------------------H
T ss_pred cCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-----------ceEEEEEechhh-----------------------H
Confidence 346788999999999999999999999877654 478888887754 6
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++.+.|+|.++|++++ +|+.+..
T Consensus 161 ~~~~~~~i~svPt~~i---~g~~~~~ 183 (521)
T 1hyu_A 161 NEITERNVMGVPAVFV---NGKEFGQ 183 (521)
T ss_dssp HHHHHTTCCSSSEEEE---TTEEEEE
T ss_pred HHHHHhCCCccCEEEE---CCEEEec
Confidence 7899999999999977 8888865
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2.9e-06 Score=78.55 Aligned_cols=65 Identities=12% Similarity=0.311 Sum_probs=53.6
Q ss_pred CCCEEEEEEe--ccCCccchhhHHHHHHHHHHHhc-CCCCEEEEEEecCC--CHHHHHHhHhcCCcccccCCChHHHHHH
Q 013684 70 EGKVTALYFS--ANWYPPCGNFTGVLVDVYEELRN-NGSDFEVVFVSSDE--DLNAFNNYRACMPWLAVPYSDLETKKAL 144 (438)
Q Consensus 70 ~gk~vll~F~--a~wC~~C~~~~p~l~~l~~~~~~-~~~~~~iv~vs~D~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l 144 (438)
.+++|||.|| |+||+ +.|.|.+++++++. . .++.|+.|++|. +.+ ...+
T Consensus 32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~-~~v~~akVD~d~~g~~~---------------------n~~l 85 (248)
T 2c0g_A 32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKAT-KDLLIATVGVKDYGELE---------------------NKAL 85 (248)
T ss_dssp TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHC-SSEEEEEEEECSSTTCT---------------------THHH
T ss_pred cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccC-CCeEEEEEECCcccccc---------------------cHHH
Confidence 4689999999 99998 99999999999976 3 258888887764 100 1689
Q ss_pred hhhcCcC--ccceEEEec
Q 013684 145 NRKFDIE--GIPCLVVLQ 160 (438)
Q Consensus 145 ~~~~~v~--~~P~~~lvd 160 (438)
++.|+|. ++||++++.
T Consensus 86 a~~~~V~~~~~PTl~~F~ 103 (248)
T 2c0g_A 86 GDRYKVDDKNFPSIFLFK 103 (248)
T ss_dssp HHHTTCCTTSCCEEEEES
T ss_pred HHHhCCCcCCCCeEEEEe
Confidence 9999999 999999985
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=98.20 E-value=5.3e-06 Score=73.87 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=36.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.++++++.||..|||+|..+.|.+.++.+++.+ ++.+..+.++
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~----------~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD----------DMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT----------TEEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC----------CeEEEEecCC
Confidence 478999999999999999999999988877654 3777777765
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=70.32 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=42.0
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.+.+.+..++++++.|+..+||+|..+.+.+.++.++|.+. ++++++...+.
T Consensus 19 ~~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~ 70 (175)
T 1z6m_A 19 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKS--------GKVERIIKLFD 70 (175)
T ss_dssp SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHT--------TSEEEEEEECC
T ss_pred CcccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhC--------CcEEEEEEeCC
Confidence 35566667899999999999999999999999998888432 25888887663
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.3e-07 Score=86.74 Aligned_cols=73 Identities=15% Similarity=0.366 Sum_probs=49.6
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
.+.+.+..++..+++|||+|||+|+++.|.++++.+++ . .|.+|....
T Consensus 189 ~~~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~~l--------------~--~Vd~d~~d~---------------- 236 (291)
T 3kp9_A 189 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV--------------P--YVECSPNGP---------------- 236 (291)
T ss_dssp HHHHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGGGS--------------C--EEESCSSCS----------------
T ss_pred HHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHc--------------C--EEEEeecCc----------------
Confidence 44555544445579999999999999999999876432 2 344442100
Q ss_pred CCchhHHHHHhcCcCceeeEEEECCCCcE
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~~G~i 336 (438)
.+...+++++|+|+++||+++ +|+.
T Consensus 237 -~~~~~~la~~~gI~~vPT~~i---~G~~ 261 (291)
T 3kp9_A 237 -GTPQAQECTEAGITSYPTWII---NGRT 261 (291)
T ss_dssp -SSCCCHHHHTTTCCSTTEEEE---TTEE
T ss_pred -hhhHHHHHHHcCCcccCeEEE---CCEE
Confidence 011378899999999999554 6764
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=98.18 E-value=3.3e-06 Score=77.81 Aligned_cols=64 Identities=17% Similarity=0.301 Sum_probs=53.6
Q ss_pred CCCEEEEEEec--cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC---CHHHHHHhHhcCCcccccCCChHHHHHH
Q 013684 70 EGKVTALYFSA--NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---DLNAFNNYRACMPWLAVPYSDLETKKAL 144 (438)
Q Consensus 70 ~gk~vll~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~---~~~~~~~~~~~~~~~~~~~~d~~~~~~l 144 (438)
.+++|+|.||| +||+ +.|.|.++++.+++. .++.++.|++|+ +.. ..+
T Consensus 21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~-~~v~~akVDvd~~g~~~~----------------------~~l 73 (240)
T 2qc7_A 21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASS-DDLLVAEVGISDYGDKLN----------------------MEL 73 (240)
T ss_dssp GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTC-TTEEEEEECCCCSSSCCS----------------------HHH
T ss_pred CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCC-CCeEEEEEeCCcccchhh----------------------HHH
Confidence 46899999999 9999 899999999999763 358888887663 211 789
Q ss_pred hhhcCcC--ccceEEEec
Q 013684 145 NRKFDIE--GIPCLVVLQ 160 (438)
Q Consensus 145 ~~~~~v~--~~P~~~lvd 160 (438)
++.|+|. ++||++++.
T Consensus 74 ~~~~~V~~~~~PTl~~f~ 91 (240)
T 2qc7_A 74 SEKYKLDKESYPVFYLFR 91 (240)
T ss_dssp HHHTTCCGGGCSEEEEEE
T ss_pred HHHcCCCCCCCCEEEEEe
Confidence 9999999 999999997
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.09 E-value=4.6e-06 Score=74.62 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=37.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
.+++++|.||+.|||+|+.+.|.| .++.+++++ ++.+..+.++.
T Consensus 112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~----------~v~~~~~~v~~ 158 (197)
T 1un2_A 112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE----------GVKMTKYHVNF 158 (197)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT----------TCCEEEEECSS
T ss_pred CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCC----------CCEEEEeccCc
Confidence 468999999999999999999998 887777754 47888888864
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=98.08 E-value=2.8e-06 Score=64.49 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=45.0
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC--cCc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD--IEG 152 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--v~~ 152 (438)
++.|+++|||+|+...+.|.++.++++ ++.+..++++.+.. . ..++.+.++ +..
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~vdi~~~~~-----------------~---~~~l~~~~~~~~~~ 58 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKDLAEKLSNERD----DFQYQYVDIRAEGI-----------------T---KEDLQQKAGKPVET 58 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS----SCEEEEECHHHHTC-----------------C---SHHHHHHTCCCSCC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCC----CceEEEEecccChH-----------------H---HHHHHHHhCCCCce
Confidence 678999999999999999999887752 37777777653211 0 046788888 999
Q ss_pred cceEE
Q 013684 153 IPCLV 157 (438)
Q Consensus 153 ~P~~~ 157 (438)
+|+++
T Consensus 59 vP~i~ 63 (85)
T 1ego_A 59 VPQIF 63 (85)
T ss_dssp SCEEE
T ss_pred eCeEE
Confidence 99984
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=9.2e-06 Score=73.44 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=52.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC---CH----------------HHHHHhHhcCCc
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---DL----------------NAFNNYRACMPW 130 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~---~~----------------~~~~~~~~~~~~ 130 (438)
.++++++.|+.+|||+|+++.|.|.++.+ .+ +++.++.+.- .. ..|.+++...+.
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~~--v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~ 158 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHLLHQQLKEYND----LG--ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLP 158 (211)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCC
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHh----CC--cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCC
Confidence 57899999999999999999999888543 23 6666654421 11 112222221111
Q ss_pred cc-ccCCChHHHHHHhhhcCcCccceEEE
Q 013684 131 LA-VPYSDLETKKALNRKFDIEGIPCLVV 158 (438)
Q Consensus 131 ~~-~~~~d~~~~~~l~~~~~v~~~P~~~l 158 (438)
.. -.-...+....+++.++|+++|++++
T Consensus 159 ~~~~~~~~v~~~~~l~~~~gV~gTPt~vi 187 (211)
T 1t3b_A 159 KEVKTPNIVKKHYELGIQFGVRGTPSIVT 187 (211)
T ss_dssp SSCCCSSHHHHHHHHHHHHTCCSSCEEEC
T ss_pred ChHHHHHHHHHHHHHHHHcCCCcCCEEEE
Confidence 00 00112234578899999999999887
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=2.1e-06 Score=67.88 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=43.0
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
.+++++.|+++|||+|+...+.|.++.+ ++.+..|++|.... .++.+.|+
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~-------~i~~~~vdi~~~~~----------------------~el~~~~g- 64 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD-------RFILQEVDITLPEN----------------------STWYERYK- 64 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSS-------SSEEEEEETTSSTT----------------------HHHHHHSS-
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhhh-------CCeEEEEECCCcch----------------------HHHHHHHC-
Confidence 4678999999999999999988775432 26677777762211 67888999
Q ss_pred CccceEE
Q 013684 151 EGIPCLV 157 (438)
Q Consensus 151 ~~~P~~~ 157 (438)
..+|+++
T Consensus 65 ~~vP~l~ 71 (100)
T 1wjk_A 65 FDIPVFH 71 (100)
T ss_dssp SSCSEEE
T ss_pred CCCCEEE
Confidence 9999764
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=71.54 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=36.1
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
.+++++++||..|||+|..+.|.|.++.++++. ++.+..+.+
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~p~ 62 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS---DAYLRTEHV 62 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT---TEEEEEEEC
T ss_pred CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC---ceEEEEecc
Confidence 578999999999999999999999999888743 377777775
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.94 E-value=1.5e-05 Score=70.59 Aligned_cols=42 Identities=24% Similarity=0.300 Sum_probs=36.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
.++++++.||..|||+|+.+.|.|.++.+++.+ ++.+..+.+
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~p~ 65 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA---DVHFVRLPA 65 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT---TEEEEEEEC
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC---CeEEEEEeh
Confidence 689999999999999999999999998888754 377776665
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=97.94 E-value=3.9e-05 Score=70.79 Aligned_cols=97 Identities=10% Similarity=0.084 Sum_probs=61.3
Q ss_pred EeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC---C-------------CHHHHHHhHh-
Q 013684 64 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD---E-------------DLNAFNNYRA- 126 (438)
Q Consensus 64 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D---~-------------~~~~~~~~~~- 126 (438)
+.+-...++++++.|+.+|||+|+++.+.+.++.+. | +++++.+.+- . ++..+.++..
T Consensus 90 i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~----g-~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~ 164 (241)
T 1v58_A 90 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS----G-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA 164 (241)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT----T-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred ceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC----C-cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHH
Confidence 445555689999999999999999999998876654 2 4777776652 1 1111111111
Q ss_pred cCC---cccccCC------ChHHHHHHhhhcCcCccceEEEecCCCCCCCc
Q 013684 127 CMP---WLAVPYS------DLETKKALNRKFDIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 127 ~~~---~~~~~~~------d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v 168 (438)
.+. ....... ..+....+.+.++|.++|++++.+. +|++
T Consensus 165 ~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~---~G~~ 212 (241)
T 1v58_A 165 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSK---ENTL 212 (241)
T ss_dssp TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEET---TTEE
T ss_pred HhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC---CCCE
Confidence 111 0000000 1123467888999999999999987 7854
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=97.92 E-value=1.5e-05 Score=82.21 Aligned_cols=62 Identities=10% Similarity=0.098 Sum_probs=51.9
Q ss_pred cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhc
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 148 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 148 (438)
..++..++.||++|||+|+.+.|.|.++..++. ++.+..|+.|.. .++.+.|
T Consensus 115 ~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~----~v~~~~vd~~~~------------------------~~~~~~~ 166 (521)
T 1hyu_A 115 IDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP----RIKHTAIDGGTF------------------------QNEITER 166 (521)
T ss_dssp CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT----TEEEEEEETTTC------------------------HHHHHHT
T ss_pred cCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC----ceEEEEEechhh------------------------HHHHHHh
Confidence 346788999999999999999999999887753 377777766633 6789999
Q ss_pred CcCccceEEE
Q 013684 149 DIEGIPCLVV 158 (438)
Q Consensus 149 ~v~~~P~~~l 158 (438)
+|.++|++++
T Consensus 167 ~i~svPt~~i 176 (521)
T 1hyu_A 167 NVMGVPAVFV 176 (521)
T ss_dssp TCCSSSEEEE
T ss_pred CCCccCEEEE
Confidence 9999999977
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.9e-06 Score=80.22 Aligned_cols=67 Identities=12% Similarity=0.345 Sum_probs=46.3
Q ss_pred EeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCCh-HHHH
Q 013684 64 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL-ETKK 142 (438)
Q Consensus 64 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~-~~~~ 142 (438)
+.+.+.-++..+++|||+|||+|+++.|.+.++.+++ . .|.+|.+ +. +...
T Consensus 190 ~~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~~l-------~--~Vd~d~~-------------------d~~~~~~ 241 (291)
T 3kp9_A 190 VGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV-------P--YVECSPN-------------------GPGTPQA 241 (291)
T ss_dssp HHHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGGGS-------C--EEESCSS-------------------CSSSCCC
T ss_pred HHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHc-------C--EEEEeec-------------------CchhhHH
Confidence 3444443445579999999999999999999887553 1 3444421 10 1116
Q ss_pred HHhhhcCcCccceEEE
Q 013684 143 ALNRKFDIEGIPCLVV 158 (438)
Q Consensus 143 ~l~~~~~v~~~P~~~l 158 (438)
+++++|+|+++||+++
T Consensus 242 ~la~~~gI~~vPT~~i 257 (291)
T 3kp9_A 242 QECTEAGITSYPTWII 257 (291)
T ss_dssp HHHHTTTCCSTTEEEE
T ss_pred HHHHHcCCcccCeEEE
Confidence 8899999999999655
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=4.9e-05 Score=56.95 Aligned_cols=59 Identities=12% Similarity=0.255 Sum_probs=41.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|+++|||+|+...+.|.++ ++.+..++++.+.+. .+..+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~----------------~i~~~~vdi~~~~~~--------------------~~~~~~~ 46 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENR----------------GFDFEMINVDRVPEA--------------------AEALRAQ 46 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT----------------TCCCEEEETTTCHHH--------------------HHHHHHT
T ss_pred EEEEcCCCChhHHHHHHHHHHC----------------CCCeEEEECCCCHHH--------------------HHHHHHh
Confidence 5679999999999988877642 356777888765421 1223358
Q ss_pred CcCceeeEEEECCCCcEE
Q 013684 320 DVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~ 337 (438)
|+.++|+++ + +|+.+
T Consensus 47 g~~~vP~~~-~--~g~~~ 61 (81)
T 1h75_A 47 GFRQLPVVI-A--GDLSW 61 (81)
T ss_dssp TCCSSCEEE-E--TTEEE
T ss_pred CCCccCEEE-E--CCEEE
Confidence 999999984 4 56554
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=5.7e-05 Score=55.49 Aligned_cols=59 Identities=12% Similarity=0.218 Sum_probs=41.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|+++|||+|+...+.|.++ ++.+..++++.+.+. .+..+.+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~----------------~i~~~~~di~~~~~~--------------------~~~~~~~ 46 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA----------------GLAYNTVDISLDDEA--------------------RDYVMAL 46 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT----------------TCCCEEEETTTCHHH--------------------HHHHHHT
T ss_pred EEEEeCCCChHHHHHHHHHHHc----------------CCCcEEEECCCCHHH--------------------HHHHHHc
Confidence 5678999999999988877643 355677777765321 1122468
Q ss_pred CcCceeeEEEECCCCcEE
Q 013684 320 DVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~ 337 (438)
++.++|+++ + +|+.+
T Consensus 47 ~~~~vP~l~-~--~g~~~ 61 (75)
T 1r7h_A 47 GYVQAPVVE-V--DGEHW 61 (75)
T ss_dssp TCBCCCEEE-E--TTEEE
T ss_pred CCCccCEEE-E--CCeEE
Confidence 999999987 3 56654
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00014 Score=61.65 Aligned_cols=92 Identities=20% Similarity=0.262 Sum_probs=57.3
Q ss_pred eeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-----CCH-------------
Q 013684 229 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-----RDQ------------- 290 (438)
Q Consensus 229 ~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-----~~~------------- 290 (438)
+.+..-.++++++.|+.++||+|+++.+.+.++ . ++.|+.+..- .+.
T Consensus 7 i~~~~~~a~~~vv~f~D~~Cp~C~~~~~~l~~l----~-----------~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~ 71 (147)
T 3gv1_A 7 IKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKM----T-----------DVTVYSFMMPIAGLHPDAARKAQILWCQPDR 71 (147)
T ss_dssp EEEEETTCCEEEEEEECTTCHHHHHHHHHHTTC----C-----------SEEEEEEECCCTTTCTTHHHHHHHHHTSSSH
T ss_pred eeeecCCCCEEEEEEECCCChhHHHHHHHHhhc----C-----------ceEEEEEEccccccChhHHHHHHHHHcCCCH
Confidence 344444678999999999999999999987653 2 3666665431 111
Q ss_pred -HHHHHHHhcCCC----cccccCCchhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 291 -TSFESYFGTMPW----LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 291 -~~~~~~~~~~~~----~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
..|..++..... -...-..+.+..+++.+||+++||+++ .+|+++
T Consensus 72 ~~a~~~~~~~g~~~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi--~nG~~i 121 (147)
T 3gv1_A 72 AKAWTDWMRKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTLVF--PNGRTQ 121 (147)
T ss_dssp HHHHHHHHHHCCCCTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC--TTSCEE
T ss_pred HHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHhCCCccCEEEE--ECCEEe
Confidence 113222221110 001112235778999999999999987 577753
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=3.5e-05 Score=60.97 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=42.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH--HHHHHHHhcCCCcccccCCchhHHHHH
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ--TSFESYFGTMPWLALPFGDPTIKELTK 317 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~--~~~~~~~~~~~~~~~p~~~d~~~~l~~ 317 (438)
++.|+++|||+|+...+.|.++...+ ++ +..++++.+. ... ...+.+
T Consensus 14 v~~f~~~~C~~C~~~~~~L~~~~~~~-----------~~--~~~vdi~~~~~~~~~------------------~~~l~~ 62 (105)
T 1kte_A 14 VVVFIKPTCPFCRKTQELLSQLPFKE-----------GL--LEFVDITATSDTNEI------------------QDYLQQ 62 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCT-----------TS--EEEEEGGGSTTHHHH------------------HHHHHH
T ss_pred EEEEEcCCCHhHHHHHHHHHHcCCCC-----------Cc--cEEEEccCCCCHHHH------------------HHHHHH
Confidence 56699999999999998887543221 12 4445555431 111 145777
Q ss_pred hcCcCceeeEEEECCCCcEEE
Q 013684 318 YFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 318 ~~~v~~~P~~~lid~~G~i~~ 338 (438)
.+|+.++|+++ + +|+.+.
T Consensus 63 ~~g~~~vP~i~-~--~g~~i~ 80 (105)
T 1kte_A 63 LTGARTVPRVF-I--GKECIG 80 (105)
T ss_dssp HHSCCCSCEEE-E--TTEEEE
T ss_pred HhCCCCcCeEE-E--CCEEEe
Confidence 89999999974 4 677765
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00027 Score=61.37 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=42.2
Q ss_pred EeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 64 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 64 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
+.+....++++++.|+..+||+|+.+.|.+.++.+++.+.+ ++.+++..+.
T Consensus 20 ~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 70 (175)
T 1z6m_A 20 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLFD 70 (175)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEECC
T ss_pred cccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCC-cEEEEEEeCC
Confidence 55566678999999999999999999999999998885543 5888887763
|
| >4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00019 Score=62.49 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=29.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhh
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQN 268 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~ 268 (438)
.++++++.|+...||+|..+.+.+.++.+++.+.
T Consensus 20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~ 53 (184)
T 4dvc_A 20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG 53 (184)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT
T ss_pred CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCc
Confidence 3678999999999999999999999888887653
|
| >3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00018 Score=63.34 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=28.3
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKI 265 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~ 265 (438)
+++++|.|+..|||+|.++.|.+.++.+++
T Consensus 22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~ 51 (185)
T 3feu_A 22 GMAPVTEVFALSCGHCRNMENFLPVISQEA 51 (185)
T ss_dssp CCCSEEEEECTTCHHHHHHGGGHHHHHHHH
T ss_pred CCCEEEEEECCCChhHHHhhHHHHHHHHHh
Confidence 688999999999999999999999998887
|
| >3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.64 E-value=7.1e-05 Score=66.25 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=33.2
Q ss_pred CCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.++++++.||+.|||+|..+.|.+ .++.+++.+ +++++.+.+.
T Consensus 13 ~~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~----------~v~~~~~~~~ 58 (189)
T 3l9v_A 13 VDAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ----------GSRMVKYHVS 58 (189)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT----------TCCEEEEECS
T ss_pred CCCCEEEEEECCCChhHHHHhHhccchHHHHHhCCC----------CCEEEEEech
Confidence 457899999999999999999986 456555543 4777777764
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=97.64 E-value=9.9e-05 Score=65.14 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=35.6
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
.++++++.|+..|||+|..+.|.+.++.+++.. ++.+..+.+
T Consensus 24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~p~ 65 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK---DVRFTLVPA 65 (193)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT---TEEEEEEEC
T ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC---ceEEEEeCc
Confidence 578899999999999999999999988887643 477777765
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=8e-05 Score=55.75 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=37.2
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|+++|||+|+...+.|.+ .+ +.+..+++|.+.+. .+..+.+++..+|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~~---------------------~~~~~~~g~~~vP 52 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMEN-------RG--FDFEMINVDRVPEA---------------------AEALRAQGFRQLP 52 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------TT--CCCEEEETTTCHHH---------------------HHHHHHTTCCSSC
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CC--CCeEEEECCCCHHH---------------------HHHHHHhCCCccC
Confidence 577999999999998887764 23 55666777755331 2222358999999
Q ss_pred eEE
Q 013684 155 CLV 157 (438)
Q Consensus 155 ~~~ 157 (438)
+++
T Consensus 53 ~~~ 55 (81)
T 1h75_A 53 VVI 55 (81)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=97.59 E-value=3.6e-05 Score=62.17 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=43.5
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEE---EEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 239 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFE---VVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 239 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~---vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
.++.|+++|||+|+...+.|.++ ++. +..|++|.+.+. ......+
T Consensus 20 ~vv~f~~~~Cp~C~~~~~~L~~~----------------~~~~~~~~~vdi~~~~~~----------------~~~~~~l 67 (114)
T 2hze_A 20 KVTIFVKYTCPFCRNALDILNKF----------------SFKRGAYEIVDIKEFKPE----------------NELRDYF 67 (114)
T ss_dssp CEEEEECTTCHHHHHHHHHHTTS----------------CBCTTSEEEEEGGGSSSH----------------HHHHHHH
T ss_pred CEEEEEeCCChhHHHHHHHHHHc----------------CCCcCceEEEEccCCCCh----------------HHHHHHH
Confidence 46779999999999988877643 233 555666543200 0012467
Q ss_pred HHhcCcCceeeEEEECCCCcEEE
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
.+.+|+.++|+++ + +|+.+.
T Consensus 68 ~~~~g~~~vP~v~-i--~g~~ig 87 (114)
T 2hze_A 68 EQITGGKTVPRIF-F--GKTSIG 87 (114)
T ss_dssp HHHHSCCSSCEEE-E--TTEEEE
T ss_pred HHHhCCCCcCEEE-E--CCEEEe
Confidence 8889999999875 4 688765
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0001 Score=58.29 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=39.4
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|+++|||+|+...+.|.++..++ .+ +..+++|.+.+ .......+.+.+++..+|
T Consensus 14 v~~f~~~~C~~C~~~~~~L~~~~~~~----~~--~~~vdi~~~~~-----------------~~~~~~~l~~~~g~~~vP 70 (105)
T 1kte_A 14 VVVFIKPTCPFCRKTQELLSQLPFKE----GL--LEFVDITATSD-----------------TNEIQDYLQQLTGARTVP 70 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCT----TS--EEEEEGGGSTT-----------------HHHHHHHHHHHHSCCCSC
T ss_pred EEEEEcCCCHhHHHHHHHHHHcCCCC----Cc--cEEEEccCCCC-----------------HHHHHHHHHHHhCCCCcC
Confidence 66799999999999888876532221 11 44456554311 011225678889999999
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
++++
T Consensus 71 ~i~~ 74 (105)
T 1kte_A 71 RVFI 74 (105)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9743
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00024 Score=58.75 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=42.1
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH--HHHHHHHhcCCCcccccCCchhHHHHHh
Q 013684 241 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ--TSFESYFGTMPWLALPFGDPTIKELTKY 318 (438)
Q Consensus 241 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~--~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 318 (438)
+.|+++|||+|+...+.|.++ ++.+..|.+|.+. ..+ ..++.+.
T Consensus 30 vvf~~~~Cp~C~~~~~~L~~~----------------~i~~~~vdid~~~~~~~~------------------~~~l~~~ 75 (130)
T 2cq9_A 30 VIFSKTSCSYCTMAKKLFHDM----------------NVNYKVVELDLLEYGNQF------------------QDALYKM 75 (130)
T ss_dssp EEEECSSCSHHHHHHHHHHHH----------------TCCCEEEETTTSTTHHHH------------------HHHHHHH
T ss_pred EEEEcCCChHHHHHHHHHHHc----------------CCCcEEEECcCCcCcHHH------------------HHHHHHH
Confidence 339999999999998887754 1334556666431 111 2457788
Q ss_pred cCcCceeeEEEECCCCcEEE
Q 013684 319 FDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 319 ~~v~~~P~~~lid~~G~i~~ 338 (438)
+++..+|+++ + +|+.+.
T Consensus 76 ~g~~~vP~l~-i--~G~~ig 92 (130)
T 2cq9_A 76 TGERTVPRIF-V--NGTFIG 92 (130)
T ss_dssp HSSCCSSEEE-E--TTEEEE
T ss_pred hCCCCcCEEE-E--CCEEEc
Confidence 9999999985 4 677765
|
| >2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0019 Score=56.36 Aligned_cols=130 Identities=12% Similarity=0.138 Sum_probs=76.4
Q ss_pred HhhhhcCCCCCccCCCCCceeecc----ccCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEE
Q 013684 209 INLLTNHDRGYLLGHPPDEKVPVS----SLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEV 281 (438)
Q Consensus 209 ~~~~g~~~~~f~l~~~g~~~~~l~----~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~v 281 (438)
....|...|.|--..-.+ .+..+ .-.+|.++|++.++||+.|..+...+ .++.+-++. ++.+
T Consensus 25 ~~~yg~~~p~F~~gs~~~-Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~----------nfV~ 93 (178)
T 2ec4_A 25 SSRYGDCHPVFFIGSLEA-AFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ----------NFIT 93 (178)
T ss_dssp HHHHCSCCCCCCCSCHHH-HHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH----------TEEE
T ss_pred HHHhCCCCCCeeeCCHHH-HHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc----------CEEE
Confidence 334566778876322222 34445 55789999999999999998876433 234444443 4666
Q ss_pred EEEecCCCHH--HHHHHHhc-CCCcccccCCchhHHHH---HhcCcCceeeEEEECCCC---cEEEcccchhhhhccccC
Q 013684 282 VFVSTDRDQT--SFESYFGT-MPWLALPFGDPTIKELT---KYFDVQGIPCLVIIGPEG---KTVTKQGRNLINLYQENA 352 (438)
Q Consensus 282 v~is~d~~~~--~~~~~~~~-~~~~~~p~~~d~~~~l~---~~~~v~~~P~~~lid~~G---~i~~~~~~~~~~~~g~~~ 352 (438)
.+.+++.++. .+..++.. .+ ..++ +.|++.++|++++|++.| +++.+ ..|.
T Consensus 94 w~~dv~~~e~~~~~~~~~~~~~g-----------~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~-------~~G~-- 153 (178)
T 2ec4_A 94 WAWDLTKDSNRARFLTMCNRHFG-----------SVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNV-------IQGN-- 153 (178)
T ss_dssp EEEECCSHHHHHHHHHHHHHHTC-----------HHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEE-------ECSC--
T ss_pred EEEeCCCchhhhhhhhhhhhhhH-----------HHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEE-------EeCC--
Confidence 6666664321 11122211 11 2333 448999999999998764 56665 3442
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 013684 353 YPFTEAKLEFLEKQMEEE 370 (438)
Q Consensus 353 ~~~~~~~~~~L~~~i~~~ 370 (438)
...++.++.|...+++.
T Consensus 154 -~~~~~ll~~L~~~~e~~ 170 (178)
T 2ec4_A 154 -TTVDELMMRLMAAMEIF 170 (178)
T ss_dssp -CCHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHh
Confidence 22445555566666543
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=97.46 E-value=6.6e-05 Score=60.61 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=40.5
Q ss_pred EEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEE---EEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 73 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFE---VVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 73 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~---iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
..++.|+++|||+|+...+.|.+ .+ +. +..+++|.+.+ .......+.+.++
T Consensus 19 ~~vv~f~~~~Cp~C~~~~~~L~~-------~~--~~~~~~~~vdi~~~~~-----------------~~~~~~~l~~~~g 72 (114)
T 2hze_A 19 NKVTIFVKYTCPFCRNALDILNK-------FS--FKRGAYEIVDIKEFKP-----------------ENELRDYFEQITG 72 (114)
T ss_dssp TCEEEEECTTCHHHHHHHHHHTT-------SC--BCTTSEEEEEGGGSSS-----------------HHHHHHHHHHHHS
T ss_pred CCEEEEEeCCChhHHHHHHHHHH-------cC--CCcCceEEEEccCCCC-----------------hHHHHHHHHHHhC
Confidence 34677999999999998887654 22 33 55566664421 1122257888899
Q ss_pred cCccceEEE
Q 013684 150 IEGIPCLVV 158 (438)
Q Consensus 150 v~~~P~~~l 158 (438)
+..+|++++
T Consensus 73 ~~~vP~v~i 81 (114)
T 2hze_A 73 GKTVPRIFF 81 (114)
T ss_dssp CCSSCEEEE
T ss_pred CCCcCEEEE
Confidence 999998754
|
| >4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00046 Score=60.84 Aligned_cols=102 Identities=16% Similarity=0.238 Sum_probs=75.7
Q ss_pred eeecccc--CCCEEEEEEe-cCCChhhhh-hhHHHHHHHHHH-HhhhhhcCCCCCCE-EEEEEecCCCHHHHHHHHhcCC
Q 013684 228 KVPVSSL--VGKTVGLYFS-ARWCIPCEK-FMPKLLSIYQKI-KQNLVEKGDALEDF-EVVFVSTDRDQTSFESYFGTMP 301 (438)
Q Consensus 228 ~~~l~~~--~gk~vll~F~-a~wC~~C~~-~~p~l~~l~~~~-~~~~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~ 301 (438)
++++++. +||.|+|+++ +-+.|.|-. .+|.+.+.++++ +.+ ++ +|+.|++| +.-.+++|.+.++
T Consensus 59 ~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~k---------Gvd~I~ciSVN-D~FVm~AW~k~~~ 128 (199)
T 4h86_A 59 TVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEK---------EVDQVIVVTVD-NPFANQAWAKSLG 128 (199)
T ss_dssp EEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHS---------CCCEEEEEESS-CHHHHHHHHHHTT
T ss_pred eeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhc---------CCcEEEEEEcC-CHHHHHHHHHHhc
Confidence 5777664 6898888777 568999976 799998888775 544 44 69999998 5566666665543
Q ss_pred ---CcccccCCchhHHHHHhcCcC---------ceeeEEEECCCCcEEEcc
Q 013684 302 ---WLALPFGDPTIKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 302 ---~~~~p~~~d~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~~ 340 (438)
-..++++.|.+.++.+.+|+. .....+||| ||+|.+..
T Consensus 129 ~~~~~~i~~laD~~~eftkalGl~~~~~~gg~RS~Rya~IVd-DGvV~~~~ 178 (199)
T 4h86_A 129 VKDTTHIKFASDPGCAFTKSIGFELAVGDGVYWSGRWAMVVE-NGIVTYAA 178 (199)
T ss_dssp CCCCSSEEEEECGGGHHHHHTTCEEEEETTEEEECSEEEEEE-TTEEEEEE
T ss_pred ccccccccccCCcchHHHHhcCceeecCCCcceeeEEEEEEE-CCEEEEEE
Confidence 346888899999999999973 233467886 99988764
|
| >2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00088 Score=51.77 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=42.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh-
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY- 318 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~- 318 (438)
++.|+.+|||+|.+....|.+ + ++.+..++++.+.+..+ .+.+.
T Consensus 6 I~vYs~~~Cp~C~~aK~~L~~-------~---------gi~y~~idi~~d~~~~~-------------------~~~~~~ 50 (92)
T 2lqo_A 6 LTIYTTSWCGYCLRLKTALTA-------N---------RIAYDEVDIEHNRAAAE-------------------FVGSVN 50 (92)
T ss_dssp EEEEECTTCSSHHHHHHHHHH-------T---------TCCCEEEETTTCHHHHH-------------------HHHHHS
T ss_pred EEEEcCCCCHhHHHHHHHHHh-------c---------CCceEEEEcCCCHHHHH-------------------HHHHHc
Confidence 556889999999987766543 2 56777888887754332 22332
Q ss_pred cCcCceeeEEEECCCCcEEE
Q 013684 319 FDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 319 ~~v~~~P~~~lid~~G~i~~ 338 (438)
.|.+.+|++++ .||.++.
T Consensus 51 ~G~~tVP~I~i--~Dg~~l~ 68 (92)
T 2lqo_A 51 GGNRTVPTVKF--ADGSTLT 68 (92)
T ss_dssp SSSSCSCEEEE--TTSCEEE
T ss_pred CCCCEeCEEEE--eCCEEEe
Confidence 37889998664 5777764
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00019 Score=59.34 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=37.6
Q ss_pred EEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceE
Q 013684 77 YFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCL 156 (438)
Q Consensus 77 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~ 156 (438)
.|+++|||+|+...+.|.++ + +.+..+++|.+.+ .......+.+.+++..+|++
T Consensus 31 vf~~~~Cp~C~~~~~~L~~~-------~--i~~~~vdid~~~~-----------------~~~~~~~l~~~~g~~~vP~l 84 (130)
T 2cq9_A 31 IFSKTSCSYCTMAKKLFHDM-------N--VNYKVVELDLLEY-----------------GNQFQDALYKMTGERTVPRI 84 (130)
T ss_dssp EEECSSCSHHHHHHHHHHHH-------T--CCCEEEETTTSTT-----------------HHHHHHHHHHHHSSCCSSEE
T ss_pred EEEcCCChHHHHHHHHHHHc-------C--CCcEEEECcCCcC-----------------cHHHHHHHHHHhCCCCcCEE
Confidence 39999999999998887764 2 2334455554311 11222568888999999998
Q ss_pred EE
Q 013684 157 VV 158 (438)
Q Consensus 157 ~l 158 (438)
++
T Consensus 85 ~i 86 (130)
T 2cq9_A 85 FV 86 (130)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00041 Score=58.66 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=41.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC--HHHHHHHHhcCCCcccccCCchhHHHHHh
Q 013684 241 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD--QTSFESYFGTMPWLALPFGDPTIKELTKY 318 (438)
Q Consensus 241 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~--~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 318 (438)
+.|+++|||+|+...+.|.++. +.+..+.+|.+ ...+ ..++.+.
T Consensus 52 vvf~~~~Cp~C~~~k~~L~~~~----------------i~~~~vdId~~~~~~~~------------------~~~L~~~ 97 (146)
T 2ht9_A 52 VIFSKTSCSYCTMAKKLFHDMN----------------VNYKVVELDLLEYGNQF------------------QDALYKM 97 (146)
T ss_dssp EEEECTTCHHHHHHHHHHHHHT----------------CCCEEEEGGGCTTHHHH------------------HHHHHHH
T ss_pred EEEECCCChhHHHHHHHHHHcC----------------CCeEEEECccCcCCHHH------------------HHHHHHH
Confidence 3399999999999988877541 23444555533 1111 2457888
Q ss_pred cCcCceeeEEEECCCCcEEE
Q 013684 319 FDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 319 ~~v~~~P~~~lid~~G~i~~ 338 (438)
+|+.++|+++ + +|+.+.
T Consensus 98 ~g~~tvP~if-i--~G~~ig 114 (146)
T 2ht9_A 98 TGERTVPRIF-V--NGTFIG 114 (146)
T ss_dssp HSCCCSCEEE-E--TTEEEE
T ss_pred hCCCCcCeEE-E--CCEEEe
Confidence 9999999985 4 687764
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00064 Score=57.48 Aligned_cols=87 Identities=20% Similarity=0.276 Sum_probs=54.0
Q ss_pred EeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-----CC-------------H-HHHHHh
Q 013684 64 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----ED-------------L-NAFNNY 124 (438)
Q Consensus 64 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-----~~-------------~-~~~~~~ 124 (438)
+.+..-.++++++.|+.++||+|+++.+.|.++ + ++.++++.+- .+ + ..|...
T Consensus 7 i~~~~~~a~~~vv~f~D~~Cp~C~~~~~~l~~l-------~-~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~ 78 (147)
T 3gv1_A 7 IKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKM-------T-DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDW 78 (147)
T ss_dssp EEEEETTCCEEEEEEECTTCHHHHHHHHHHTTC-------C-SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHH
T ss_pred eeeecCCCCEEEEEEECCCChhHHHHHHHHhhc-------C-ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHH
Confidence 344444679999999999999999999987653 2 3667666431 11 1 112222
Q ss_pred HhcCCcc---cccCCChHHHHHHhhhcCcCccceEEE
Q 013684 125 RACMPWL---AVPYSDLETKKALNRKFDIEGIPCLVV 158 (438)
Q Consensus 125 ~~~~~~~---~~~~~d~~~~~~l~~~~~v~~~P~~~l 158 (438)
+..-... .-.-...+....+++.+||+++|++++
T Consensus 79 ~~~g~~~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi 115 (147)
T 3gv1_A 79 MRKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTLVF 115 (147)
T ss_dssp HHHCCCCTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC
T ss_pred HhCCCCCCccHHHHHHHHHHHHHHHHhCCCccCEEEE
Confidence 2211110 001112345678999999999999998
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00028 Score=51.65 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=37.0
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|+++||++|+...+.|.++ + +.+..++++.+.+ ....+ +.+++..+|
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-------~--i~~~~~di~~~~~--------------------~~~~~-~~~~~~~vP 52 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA-------G--LAYNTVDISLDDE--------------------ARDYV-MALGYVQAP 52 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEETTTCHH--------------------HHHHH-HHTTCBCCC
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------C--CCcEEEECCCCHH--------------------HHHHH-HHcCCCccC
Confidence 5679999999999988877653 3 4555566665432 11223 468999999
Q ss_pred eEE
Q 013684 155 CLV 157 (438)
Q Consensus 155 ~~~ 157 (438)
+++
T Consensus 53 ~l~ 55 (75)
T 1r7h_A 53 VVE 55 (75)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0012 Score=52.06 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=18.9
Q ss_pred EEEEEecCCChhhhhhhHHHHHH
Q 013684 239 VGLYFSARWCIPCEKFMPKLLSI 261 (438)
Q Consensus 239 vll~F~a~wC~~C~~~~p~l~~l 261 (438)
.++.|+++|||+|++..+.|.++
T Consensus 23 ~v~ly~~~~Cp~C~~ak~~L~~~ 45 (103)
T 3nzn_A 23 KVIMYGLSTCVWCKKTKKLLTDL 45 (103)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCchHHHHHHHHHHc
Confidence 45568999999999999887753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 438 | ||||
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 1e-23 | |
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 7e-22 | |
| d1v5na_ | 89 | g.49.1.3 (A:) Pdi-like hypothetical protein At1g60 | 1e-19 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 4e-16 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 1e-14 | |
| d1o8xa_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula | 2e-09 | |
| d1o8xa_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula | 3e-08 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 1e-08 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 1e-06 | |
| d2b5xa1 | 143 | c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase | 4e-08 | |
| d2b5xa1 | 143 | c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase | 6e-07 | |
| d1sena_ | 135 | c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 | 5e-06 | |
| d1z6na1 | 166 | c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps | 3e-04 | |
| d1jfua_ | 176 | c.47.1.10 (A:) Membrane-anchored thioredoxin-like | 3e-04 | |
| d2hfda1 | 132 | c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H | 6e-04 | |
| d1lu4a_ | 134 | c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc | 0.002 |
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 94.1 bits (233), Expect = 1e-23
Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
+ + SL GKTV YFSA WC P F P+L+ Y+ + ++FEV+ +S
Sbjct: 19 ADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK--------KNFEVMLISW 70
Query: 287 DRDQTSFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLVIIGPE-GKTVTKQGRNL 344
D F+ Y+ MPWLALPF D E LT FDV+ IP LV + + G +T Q R +
Sbjct: 71 DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
Query: 345 I-NLYQENAYPFTE 357
+ + +P+
Sbjct: 131 VVKDPEAKDFPWPN 144
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 89.1 bits (220), Expect = 7e-22
Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 2/127 (1%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
++ + L GK YFSA+W PP FT L+D Y+ +FEV+ +S DE
Sbjct: 18 AADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAED 76
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
F +Y A MPWLA+P+ D + + L FD++ IP LV ++ D + T ++
Sbjct: 77 FKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEA-DSGNIITTQARTMVVKDP 135
Query: 181 GIRAFPF 187
+ FP+
Sbjct: 136 EAKDFPW 142
|
| >d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89 | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: C1-like domain domain: Pdi-like hypothetical protein At1g60420 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 81.1 bits (200), Expect = 1e-19
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 351 NAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGH-RHELNLVSEGTGGGPFICCDCDEQGS 409
+ TE +L+ +E + +E AK+ P+ H+ H HEL L + C C+E+G+
Sbjct: 3 SGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTR----VQVYTCDKCEEEGT 58
Query: 410 GWAYQCLECGYEVHPKC 426
W+Y C EC +++H KC
Sbjct: 59 IWSYHCDECDFDLHAKC 75
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 73.0 bits (178), Expect = 4e-16
Identities = 54/134 (40%), Positives = 72/134 (53%), Gaps = 11/134 (8%)
Query: 226 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285
+V + SLVGKTV LYFSA WC PC F P L Y+K ++FEVV +S
Sbjct: 18 SGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA--------KNFEVVLIS 69
Query: 286 TDRDQTSFESYFGTMPWLALPFG-DPTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRN 343
D +++ F Y+G MPWLALPF T+ EL K F V+ IP L+ I + G + Q R
Sbjct: 70 WDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQART 129
Query: 344 -LINLYQENAYPFT 356
+I +P+
Sbjct: 130 RVIEDPDGANFPWP 143
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 68.8 bits (167), Expect = 1e-14
Identities = 47/134 (35%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 55 TSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114
T+ EV + L GK LYFSA+W PPC FT VL + YE+ +FEVV +S
Sbjct: 12 TNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISW 70
Query: 115 DEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV 174
DE+ + F++Y MPWLA+P+ T L + F +E IP L+ + D
Sbjct: 71 DENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINA-DTGAIIGTQART 129
Query: 175 ELIYKYGIRAFPFT 188
+I FP+
Sbjct: 130 RVIEDPDGANFPWP 143
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Score = 53.9 bits (128), Expect = 2e-09
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 11/136 (8%)
Query: 226 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285
D +V V SL GK V YFSA WC P F P+L+ Y K ++ ++FEVVF +
Sbjct: 16 DGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES--------KNFEVVFCT 67
Query: 286 TDRDQTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGR- 342
D ++ F YF MPWLA+PF +++L+K+F+V+ IP L+ + + G VT + R
Sbjct: 68 WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 127
Query: 343 NLINLYQENAYPFTEA 358
L+ + +P+ +A
Sbjct: 128 TLVKDPEGEQFPWKDA 143
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Score = 50.4 bits (119), Expect = 3e-08
Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 2/128 (1%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
EV+V L GK+ YFSA+W PP FT L++ Y++ + +FEVVF + DE+ +
Sbjct: 16 DGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDK-FHESKNFEVVFCTWDEEEDG 74
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
F Y A MPWLAVP++ E + L++ F++E IP L+ + D D T L+
Sbjct: 75 FAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDA-DSGDVVTTRARATLVKDP 133
Query: 181 GIRAFPFT 188
FP+
Sbjct: 134 EGEQFPWK 141
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 51.1 bits (121), Expect = 1e-08
Identities = 20/145 (13%), Positives = 41/145 (28%), Gaps = 15/145 (10%)
Query: 226 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285
+ V K + F A WC C + +K Q+ L
Sbjct: 13 NRPASVYLKKDKPTLIKFWASWCPLCLSELG----QTEKWAQDAKFSSANLITVASPGFL 68
Query: 286 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLI 345
++ F+ ++ + + LP + + ++ P +IG +G
Sbjct: 69 HEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIV----- 123
Query: 346 NLYQENAYPFTEAKLEFLEKQMEEE 370
EA+ L + +
Sbjct: 124 ------KGSINEAQALALIRDPNAD 142
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 46.0 bits (108), Expect = 1e-06
Identities = 16/140 (11%), Positives = 37/140 (26%), Gaps = 16/140 (11%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDF--EVVFVSSDEDL 118
V + K T + F A+W P C + G ++ + + ++ E
Sbjct: 13 NRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKK 72
Query: 119 NAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIY 178
+ + + + +I P ++ DG
Sbjct: 73 DGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGK----------DGDVQRI 122
Query: 179 KYGIRAFPFTKEKLEELQKE 198
G + + L ++
Sbjct: 123 VKG----SINEAQALALIRD 138
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Score = 49.9 bits (118), Expect = 4e-08
Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 10/135 (7%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
GE + + K T ++F + C + + ++ ++ + V S++DL+
Sbjct: 19 GEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDP 78
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 180
+++ AL F+ E +P V G ++
Sbjct: 79 GKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDK----------TGQLRHFQA 128
Query: 181 GIRAFPFTKEKLEEL 195
G ++++ +
Sbjct: 129 GGSGMKMLEKRVNRV 143
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Score = 46.5 bits (109), Expect = 6e-07
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 6/114 (5%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
E + K ++F + C C++ MP++ K + L + E
Sbjct: 20 EVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPG 79
Query: 287 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340
+T+ E ++ D LT F+ + +P + G+ Q
Sbjct: 80 KIKETAAEHDITQPIFV-----DSD-HALTDAFENEYVPAYYVFDKTGQLRHFQ 127
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 5e-06
Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 8/131 (6%)
Query: 223 HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 282
++ ++ G + + WC C+ PK + + + +F +V
Sbjct: 12 RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS--------HNFVMV 63
Query: 283 FVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 342
+ + + + + F DP+ K + + G P + V + +
Sbjct: 64 NLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMK 123
Query: 343 NLINLYQENAY 353
+A+
Sbjct: 124 EAQERLTGDAF 134
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.8 bits (89), Expect = 3e-04
Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 15/122 (12%)
Query: 231 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 290
+ + + L WC C+ + L + + E+ +S R +
Sbjct: 49 LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-----------NIELAIISKGRAE 97
Query: 291 TSFESYF--GTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLY 348
+ + D V+ ++ GP+ K G L +
Sbjct: 98 DDLRQRLALERIAIPLVLVLDEEFNL--LGRFVERPQAVLDGGPQALAAYKAGDYLEHAI 155
Query: 349 QE 350
+
Sbjct: 156 GD 157
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Score = 39.3 bits (90), Expect = 3e-04
Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 4/113 (3%)
Query: 227 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286
+ +S GKT+ + A WC+PC K MP +++ L + +
Sbjct: 47 KPKKLSDFRGKTLLVNLWATWCVPCRKEMP----ALDELQGKLSGPNFEVVAINIDTRDP 102
Query: 287 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339
++ +T + T ++L G+P V++ P+G +
Sbjct: 103 EKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 155
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Score = 37.7 bits (87), Expect = 6e-04
Identities = 12/96 (12%), Positives = 25/96 (26%), Gaps = 9/96 (9%)
Query: 50 LRRRMTSTKEIGEEVKVSDLEG-------KVTALYFSANWYPPCGNFTGVLVDVYEELRN 102
L +RM + V S L+ V L P + ++ ++ E +
Sbjct: 10 LWQRMLA--RGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD 67
Query: 103 NGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL 138
+ + E + L +
Sbjct: 68 YTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNY 103
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 36.1 bits (82), Expect = 0.002
Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 6/101 (5%)
Query: 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120
G + L+GK L+F W P C L V +
Sbjct: 14 GAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSF 73
Query: 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQP 161
+ Y L + + ++++ P V +
Sbjct: 74 VSKYNLNFTNL------NDADGVIWARYNVPWQPAFVFYRA 108
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 438 | |||
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.92 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.91 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.91 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.9 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.9 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.9 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.89 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.88 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.88 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.88 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.86 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.85 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.85 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.85 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.84 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.83 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.82 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.82 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.82 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 99.8 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.78 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.78 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.78 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 99.78 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.76 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.76 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 99.75 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.75 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.75 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.75 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 99.74 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 99.73 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.72 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.71 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.71 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 99.7 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.7 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.68 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 99.68 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.67 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.66 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.66 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.65 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.65 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 99.64 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 99.64 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.64 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.63 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.62 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.61 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.59 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 99.58 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 99.58 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.57 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.57 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 99.56 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.55 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.55 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.55 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.54 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.53 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.53 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.52 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.52 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.52 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.52 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.51 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 99.51 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 99.51 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.51 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.5 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.5 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.49 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.48 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.47 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.46 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.45 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.45 | |
| d1v5na_ | 89 | Pdi-like hypothetical protein At1g60420 {Thale cre | 99.44 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.42 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 99.41 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.41 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.4 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.39 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.38 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.38 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.38 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.37 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.34 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.34 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.34 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.33 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.32 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.32 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.31 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.31 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.31 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.3 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.3 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.3 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.29 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.29 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.29 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.29 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 99.28 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.28 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.28 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.27 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.26 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.26 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.25 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.23 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.2 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.19 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.19 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 99.19 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.15 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.14 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.14 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 99.13 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.12 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.11 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.1 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 99.1 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 99.09 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 99.09 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.08 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.06 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.05 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 99.02 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 99.01 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 99.0 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 98.91 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 98.87 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 98.84 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 98.83 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 98.82 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 98.78 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 98.75 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 98.75 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.69 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 98.58 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 98.52 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 98.38 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.26 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 98.2 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 98.18 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 98.05 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 98.03 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 98.0 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 97.74 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 97.69 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.67 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 97.33 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 97.28 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 97.27 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.13 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.04 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 97.0 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 96.86 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 96.78 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 96.6 | |
| d1tota1 | 52 | CREB-binding protein, CBP {Mouse (Mus musculus) [T | 96.45 | |
| d2fc7a1 | 69 | Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu | 96.31 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 96.22 | |
| d2dipa1 | 85 | Zinc finger ZZ-type-containing protein 2 {Human (H | 96.15 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 95.82 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 95.59 | |
| d1kbea_ | 49 | Kinase suppressor of Ras, Ksr {Mouse (Mus musculus | 95.54 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 95.45 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 95.43 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 95.4 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 95.28 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 95.18 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 94.99 | |
| d1faqa_ | 52 | RAF-1 {Human (Homo sapiens) [TaxId: 9606]} | 94.91 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 94.77 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 94.29 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 94.02 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 93.95 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 93.66 | |
| d1tbna_ | 66 | Protein kinase c-gamma {Rat (Rattus rattus) [TaxId | 93.41 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 93.32 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 93.03 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 92.11 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 90.68 | |
| d1xa6a3 | 62 | Beta-chimaerin, middle domain {Human (Homo sapiens | 90.43 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 89.71 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 88.36 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 87.35 | |
| d1r79a_ | 84 | Diacylglycerol kinase delta {Human (Homo sapiens) | 86.68 | |
| d1ptqa_ | 50 | Protein kinase C-delta (PKCdelta) {Mouse (Mus musc | 86.03 | |
| d2b5ea3 | 125 | Protein disulfide isomerase, PDI {Baker's yeast (S | 82.67 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 82.14 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 80.74 |
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=2.6e-25 Score=197.38 Aligned_cols=150 Identities=10% Similarity=0.079 Sum_probs=126.9
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC--
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-- 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-- 287 (438)
.+|.++|+|++ |.+|+ .+++++++||+++|+|||+|||+|++++|.|.+++++|++ ++.+++|+.+
T Consensus 7 ~vG~~aPdF~l~d~~G~-~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~----------~v~~v~i~snd~ 75 (187)
T d2cvba1 7 PLESPLIDAELPDPRGG-RYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRG----------KVAFVGINANDY 75 (187)
T ss_dssp CTTCBCCCCEEECTTSC-EEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT----------TEEEEEEECCCT
T ss_pred CCCCccCccEeecCCCC-EEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhccc----------cceeeeeecccc
Confidence 36899999999 99999 9999999999999999999999999999999999999975 4889998753
Q ss_pred -----CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHH
Q 013684 288 -----RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEF 362 (438)
Q Consensus 288 -----~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~ 362 (438)
.+.+.++++.++.+ +.+|+..|..+.+.++|++.++|++||||++|+|++++++++.... . .+..-.+
T Consensus 76 ~~~~~~~~e~~~~~~~~~~-~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~y~G~idd~~~~--~----~~~~~~~ 148 (187)
T d2cvba1 76 EKYPEDAPEKMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKD--P----SKVQSHD 148 (187)
T ss_dssp TTCGGGSHHHHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSCTTC--G----GGCCCCH
T ss_pred ccccccchHHHHHHHHHhC-CcceeeechhhhhcccccccceeeEEEEcCCCeEEEEeeecCCCCC--C----CCCCHHH
Confidence 24577888888887 8899999999999999999999999999999999999876663211 1 1222256
Q ss_pred HHHHHHHHhccCCCcc
Q 013684 363 LEKQMEEEAKNLPRSE 378 (438)
Q Consensus 363 L~~~i~~~~~~~~~~~ 378 (438)
|.++|+.++++.+...
T Consensus 149 L~~Ai~~ll~g~~~~~ 164 (187)
T d2cvba1 149 LEAAIEALLRGEEPPL 164 (187)
T ss_dssp HHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHcCCCCCc
Confidence 8889999888876543
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.91 E-value=1.2e-24 Score=184.98 Aligned_cols=139 Identities=32% Similarity=0.579 Sum_probs=122.0
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
.+|..+|.++ ....+|.+++|++++||+|+|+|||+||++|+.++|.|+++++++... .++++++|+.|.+
T Consensus 3 ~~~k~~P~~~--------~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~-~~~~vi~is~d~~ 73 (144)
T d1o73a_ 3 GLAKYLPGAT--------NLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDEN 73 (144)
T ss_dssp GGGGTSCTTC--------CBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSS
T ss_pred CcccCCCCce--------eeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhc-cCeEEEEEecchh
Confidence 4678899999 667788889999999999999999999999999999999999999655 3699999999999
Q ss_pred HHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCC-CCcccccc-hhHHhhhCCCCccCC
Q 013684 118 LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDK-DDATLHDG-VELIYKYGIRAFPFT 188 (438)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~-G~v~~~~~-~~~i~~~~~~a~p~~ 188 (438)
.+.+.+++.+.+|..+++.+......+.+.|+|.++|+++|||+ + |+++.+++ .+.++++....|||-
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~lID~---~~G~Ii~~~~~~~~~~d~~~~~fpw~ 143 (144)
T d1o73a_ 74 ESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINA---DTGAIIGTQARTRVIEDPDGANFPWP 143 (144)
T ss_dssp HHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEET---TTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred HHHHHHHHHhccccceeeeccchHHHHHHHcCCCcCCEEEEEEC---CCCEEEeecchhhhhhCcccccCCCC
Confidence 99999999999998888866666578999999999999999998 8 89998887 456666666667763
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.91 E-value=4.8e-24 Score=181.29 Aligned_cols=124 Identities=44% Similarity=0.775 Sum_probs=110.9
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
-++..+|+++. ..+|. ++++++++||+|+|+|||+||++|+.++|.|.++++++.++ .++++++|+.|.+
T Consensus 3 ~~~k~~P~~~~~~~~~~-~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~--------~~~~vi~is~d~~ 73 (144)
T d1o73a_ 3 GLAKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA--------KNFEVVLISWDEN 73 (144)
T ss_dssp GGGGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCSS
T ss_pred CcccCCCCceeeccCCC-EEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhc--------cCeEEEEEecchh
Confidence 35788999998 88888 89999999999999999999999999999999999999643 3799999999999
Q ss_pred HHHHHHHHhcCCCcccccCCc-hhHHHHHhcCcCceeeEEEECCC-CcEEEcccch
Q 013684 290 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRN 343 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d-~~~~l~~~~~v~~~P~~~lid~~-G~i~~~~~~~ 343 (438)
.+++++++++++|..+++..+ ...++.+.|+|.++|+++|||++ |+|++++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~~ 129 (144)
T d1o73a_ 74 ESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQART 129 (144)
T ss_dssp HHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHH
T ss_pred HHHHHHHHHhccccceeeeccchHHHHHHHcCCCcCCEEEEEECCCCEEEeecchh
Confidence 999999999999988888654 45679999999999999999997 9999987543
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.90 E-value=5.5e-24 Score=180.78 Aligned_cols=127 Identities=33% Similarity=0.657 Sum_probs=113.0
Q ss_pred cCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCC
Q 013684 57 TKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYS 136 (438)
Q Consensus 57 ~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~ 136 (438)
.+.+|+.+++++++||+|+|+|||+||++|+.++|.|.++++++++++ +++|++|+.|.+.+++.+++++++|..+++.
T Consensus 14 l~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~-~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~ 92 (144)
T d1i5ga_ 14 LKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKK-NFEVMLISWDESAEDFKDYYAKMPWLALPFE 92 (144)
T ss_dssp EETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCSSHHHHHHHHTTCSSEECCTT
T ss_pred ccCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhcc-CcEEEEEeccccHHHHHHHHHhCCCCceeeE
Confidence 477888999999999999999999999999999999999999998863 6999999999999999999999999998887
Q ss_pred ChHHHHHHhhhcCcCccceEEEecCCCCC-CCcccccchhHHhh-hCCCCccC
Q 013684 137 DLETKKALNRKFDIEGIPCLVVLQPYDDK-DDATLHDGVELIYK-YGIRAFPF 187 (438)
Q Consensus 137 d~~~~~~l~~~~~v~~~P~~~lvd~~~~~-G~v~~~~~~~~i~~-~~~~a~p~ 187 (438)
+......+.+.|+|.++|+++|||+ + |+++..+++..+.. .....|||
T Consensus 93 d~~~~~~l~~~y~v~~iPt~~lid~---~~G~vi~~~g~~~v~~d~~~~~fpw 142 (144)
T d1i5ga_ 93 DRKGMEFLTTGFDVKSIPTLVGVEA---DSGNIITTQARTMVVKDPEAKDFPW 142 (144)
T ss_dssp CHHHHHHHHHHTTCCSSSEEEEEET---TTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred ChHHHHHHHHHCCCCCcCEEEEEeC---CCCEEEeehhHHHHhhCcccccCCC
Confidence 7766567899999999999999998 7 89999888766654 45556776
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=9.4e-24 Score=177.85 Aligned_cols=133 Identities=24% Similarity=0.447 Sum_probs=119.1
Q ss_pred hcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHH
Q 013684 213 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 291 (438)
Q Consensus 213 g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~ 291 (438)
|..+|+|++ +.+|+ .+++++++||+++|+||++||++|..+++.++++++++.+. ++.+++|+++.+.+
T Consensus 2 G~~~P~f~l~~~~G~-~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~v~i~~~~~~~ 71 (137)
T d1st9a_ 2 GSDAPNFVLEDTNGK-RIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ---------GVEIVAVNVGESKI 71 (137)
T ss_dssp CEECCCCEEECTTSC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---------TEEEEEEEESCCHH
T ss_pred cCcCCCeEEECCCcC-EEeHHHhCCCEEEEEEeeccccceeeccccccccccccccc---------ccccccccccchhh
Confidence 678999999 99999 99999999999999999999999999999999999999876 89999999998999
Q ss_pred HHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHH
Q 013684 292 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQM 367 (438)
Q Consensus 292 ~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i 367 (438)
.+++++++++ +.+|+..|....+++.|++.++|+++|+|++|+++++. .| +.+++.++++.+.|
T Consensus 72 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~-------~G----~~~~~~~~~~l~~l 135 (137)
T d1st9a_ 72 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVV-------TG----TMTESMIHDYMNLI 135 (137)
T ss_dssp HHHHHHHHTT-CCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEE-------ES----CCCHHHHHHHHHHH
T ss_pred hHHHHHHHcC-CCccccccccchhhhhhhccccceEEEECCCCEEEEEE-------EC----CCCHHHHHHHHHhh
Confidence 9999999988 77999888889999999999999999999999999873 23 34566666665544
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.90 E-value=3.6e-24 Score=179.76 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=105.9
Q ss_pred hcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHH
Q 013684 213 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 291 (438)
Q Consensus 213 g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~ 291 (438)
|++.++|++ +.+|+ .+++++++||+++|+||++|||+|+.++|.|.+++++++ ++.+++|+.+.+.+
T Consensus 1 ~d~~~~f~~~~~~G~-~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~-----------~v~~v~v~~~~~~~ 68 (134)
T d1lu4a_ 1 ADERLQFTATTLSGA-PFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-----------AVTFVGIATRADVG 68 (134)
T ss_dssp CGGGGCCEEEBTTSC-EEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSSCHH
T ss_pred CCCCCcceeECCCCC-EEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc-----------cccccccccccchh
Confidence 467899999 99999 999999999999999999999999999999999887653 67999999999999
Q ss_pred HHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 292 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 292 ~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+++|+++++ +.+|+..|....+++.||+.++|+++|||++|+++...
T Consensus 69 ~~~~~~~~~~-~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~v~ 116 (134)
T d1lu4a_ 69 AMQSFVSKYN-LNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVN 116 (134)
T ss_dssp HHHHHHHHHT-CCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEEEEC
T ss_pred hhhhhhhhhc-cccceeeCchHHHHHHcCCCcCCEEEEEeCCCeEEEEe
Confidence 9999999988 78999999889999999999999999999999987653
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.89 E-value=2.2e-23 Score=177.03 Aligned_cols=116 Identities=40% Similarity=0.786 Sum_probs=104.0
Q ss_pred CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCC
Q 013684 222 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP 301 (438)
Q Consensus 222 ~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 301 (438)
+.+|. .+++++++||+|+|+|||+||++|+.++|.|.+++++++++ .+++||+|+.|.+.+++++++++++
T Consensus 15 ~~~~~-~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~--------~~~~vi~vs~D~~~~~~~~~~~~~~ 85 (144)
T d1i5ga_ 15 KGAAA-DIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK--------KNFEVMLISWDESAEDFKDYYAKMP 85 (144)
T ss_dssp ETTEE-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCSSHHHHHHHHTTCS
T ss_pred cCCCC-EeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhc--------cCcEEEEEeccccHHHHHHHHHhCC
Confidence 77788 89999999999999999999999999999999999999864 4799999999999999999999999
Q ss_pred CcccccCCch-hHHHHHhcCcCceeeEEEECCC-CcEEEcccchhhh
Q 013684 302 WLALPFGDPT-IKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNLIN 346 (438)
Q Consensus 302 ~~~~p~~~d~-~~~l~~~~~v~~~P~~~lid~~-G~i~~~~~~~~~~ 346 (438)
|..+++.... ...+.+.|+|.++|+++|||++ |+|+.++|+..+.
T Consensus 86 ~~~~~~~d~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v~ 132 (144)
T d1i5ga_ 86 WLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVV 132 (144)
T ss_dssp SEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHH
T ss_pred CCceeeEChHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHHh
Confidence 9888876553 3568999999999999999996 9999998766653
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.88 E-value=4.2e-23 Score=175.30 Aligned_cols=139 Identities=32% Similarity=0.612 Sum_probs=121.9
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCH
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 118 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~ 118 (438)
+|..+|+|+ +.+.+|+++++++++||+|+|+||++||++|+.++|.|.+++++++... ++.+++|+.|.+.
T Consensus 2 ~~k~~P~~~--------~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~-~~~~v~is~d~~~ 72 (144)
T d1o8xa_ 2 LDKYLPGIE--------KLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESK-NFEVVFCTWDEEE 72 (144)
T ss_dssp GGGTSTTCC--------EEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCCSH
T ss_pred CCCCCCCcE--------eEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhccccc-ccccccccccccH
Confidence 578899999 8899999999999999999999999999999999999999999997763 6999999999999
Q ss_pred HHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCC-CCcccccchh-HHhhhCCCCccCCh
Q 013684 119 NAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDK-DDATLHDGVE-LIYKYGIRAFPFTK 189 (438)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~-G~v~~~~~~~-~i~~~~~~a~p~~~ 189 (438)
+++..++....|..+++...+....+.+.|+|.++|+++|||+ + |+|+..+++. +..+.....|||.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~---~~G~Vi~~~~~~~~~~d~~~~~~~w~~ 142 (144)
T d1o8xa_ 73 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDA---DSGDVVTTRARATLVKDPEGEQFPWKD 142 (144)
T ss_dssp HHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEET---TTCCEEESCHHHHHTTCTTCTTTTCCC
T ss_pred HHHHHHHhhccccceeeecccchhhHHHHcCCCcCCEEEEEeC---CCCEEEEEechhhhhhCcccccCCCCC
Confidence 9999999998888888755566678999999999999999998 7 7998888754 44555566677754
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.88 E-value=6e-23 Score=172.13 Aligned_cols=113 Identities=18% Similarity=0.250 Sum_probs=104.1
Q ss_pred CCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 013684 216 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 294 (438)
Q Consensus 216 ~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 294 (438)
..+|++ +.+|+ .+++++++||+++|+|||+|||+|+.++|.|.++++++++ +.+++|+.++..+..+
T Consensus 5 ~~df~~~~~~G~-~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~-----------~~~v~v~~~d~~~~~~ 72 (134)
T d1zzoa1 5 QLQFSAKTLDGH-DFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE-----------VTFVGVAGLDQVPAMQ 72 (134)
T ss_dssp GGCCEEEBTTSC-EEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-----------SEEEEEECSSCHHHHH
T ss_pred CcceeEEcCCCC-EEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcc-----------cccccccccccchhHH
Confidence 357999 99999 9999999999999999999999999999999999988763 5788999888889999
Q ss_pred HHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 295 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 295 ~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.++++..+|+..|....+.+.||+.++|+++|||++|+|++..
T Consensus 73 ~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~iiD~~G~i~~~~ 118 (134)
T d1zzoa1 73 EFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDVVR 118 (134)
T ss_dssp HHHHHTTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred HHHHhcCCcceeEEeeccchHHHhcCCCccCeEEEECCCCeEEEEE
Confidence 9999999888999999889999999999999999999999998754
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.88 E-value=5.9e-23 Score=174.35 Aligned_cols=125 Identities=38% Similarity=0.759 Sum_probs=112.6
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 290 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~ 290 (438)
++..+|+|++ +.+|+ ++++++++||+|+|+||++||++|+.++|.|.+++++|..+ .++.+|+|+.|.+.
T Consensus 2 ~~k~~P~~~~~~~~g~-~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~--------~~~~~v~is~d~~~ 72 (144)
T d1o8xa_ 2 LDKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES--------KNFEVVFCTWDEEE 72 (144)
T ss_dssp GGGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCCSH
T ss_pred CCCCCCCcEeEcCCCC-EEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccc--------cccccccccccccH
Confidence 4678999999 99999 99999999999999999999999999999999999999754 37999999999999
Q ss_pred HHHHHHHhcCCCcccccCC-chhHHHHHhcCcCceeeEEEECCC-CcEEEcccchhh
Q 013684 291 TSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNLI 345 (438)
Q Consensus 291 ~~~~~~~~~~~~~~~p~~~-d~~~~l~~~~~v~~~P~~~lid~~-G~i~~~~~~~~~ 345 (438)
+.+..++...+|..+++.. +...++.+.|+|.++|+++|||++ |+|+..+++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~~~ 129 (144)
T d1o8xa_ 73 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 129 (144)
T ss_dssp HHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHH
T ss_pred HHHHHHHhhccccceeeecccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechhhh
Confidence 9999999999999888765 456789999999999999999997 899988765443
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.86 E-value=9.2e-22 Score=166.75 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=104.8
Q ss_pred hhcCCCCCcc-C--CCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 212 LTNHDRGYLL-G--HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 212 ~g~~~~~f~l-~--~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
+|.++|+|++ + .+|+ .++++.+.||+++|+||++|||+|+.++|.+++++++++++ +++|+|+++.
T Consensus 3 ~g~~aP~~~~~~~~~ng~-~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~----------~~~i~v~~~~ 71 (143)
T d2b5xa1 3 LRQPMPELTGEKAWLNGE-VTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ----------LNVVAVHMPR 71 (143)
T ss_dssp TTCBCCCCCCCSEEESCC-CCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------SEEEEEECCC
T ss_pred CCCcCCCCcCCccCcCCe-EecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc----------ccceeEEeec
Confidence 6889999997 4 5888 88999999999999999999999999999999999999754 7899998753
Q ss_pred -----CHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 289 -----DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 -----~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+.+.+++++++++ +.+|+..|....+.+.|++.++|++++||++|+++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~-~~~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~ 127 (143)
T d2b5xa1 72 SEDDLDPGKIKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQ 127 (143)
T ss_dssp STTTSSHHHHHHHHHHTT-CCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEE
T ss_pred cccccchhhhhhHHHhhc-cCccccccCccchHHHcCCCcCCEEEEECCCCEEEEEE
Confidence 4567889999988 68999999899999999999999999999999999873
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.85 E-value=1.7e-21 Score=165.31 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=98.3
Q ss_pred CCCCCcc-CCCC--------CceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 215 HDRGYLL-GHPP--------DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 215 ~~~~f~l-~~~g--------~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
++|+|++ ..+| . .+++++++||+++|+||++||++|+.++|.+.++++.+ ++++++|+
T Consensus 2 paP~~~lp~~~g~~~~~~~~~-~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~------------~~~~~~i~ 68 (144)
T d1knga_ 2 PAPQTALPPLEGLQADNVQVP-GLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK------------RFQLVGIN 68 (144)
T ss_dssp BCCCCCBCCCTTCEETTEECC-CBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT------------TSEEEEEE
T ss_pred CCCCCCCCCCCCccccCCcCC-ccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc------------CceeEEEE
Confidence 5677776 6655 5 68889999999999999999999999999988876543 57899999
Q ss_pred cCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+......+++..++++...++..|....+.+.|++.++|+++|||++|+|+++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~ 123 (144)
T d1knga_ 69 YKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKL 123 (144)
T ss_dssp ESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEEE
T ss_pred eeechHHHHHHHHHcCCccccccccccchhhhhcCccccceEEEEcCCCeEEEEE
Confidence 9999999999999888666667778889999999999999999999999999874
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.85 E-value=9.2e-22 Score=166.65 Aligned_cols=111 Identities=16% Similarity=0.258 Sum_probs=100.5
Q ss_pred cc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-----CHHHH
Q 013684 220 LL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-----DQTSF 293 (438)
Q Consensus 220 ~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-----~~~~~ 293 (438)
+| +.+|+ ++++++++||+++|+|||+|||+|+.++|.|.+++++++.. ++.+++|+.+. .....
T Consensus 7 ~l~~~~~~-~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~---------~~~~i~v~~~~~~~~~~~~~~ 76 (143)
T d2fy6a1 7 TLKTADNR-PASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFS---------SANLITVASPGFLHEKKDGDF 76 (143)
T ss_dssp TCEETTSC-BGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGT---------TSEEEEEECTTSTTCCCTTHH
T ss_pred eeECCCCC-EeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccC---------CcEEEEEeeeecccccchhhh
Confidence 56 89999 99999999999999999999999999999999999998865 78999999752 34567
Q ss_pred HHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 294 ESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 294 ~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+++...++..+|+..|..+.+++.|++.++|+++|||++|+|+++.
T Consensus 77 ~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~ 123 (143)
T d2fy6a1 77 QKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIV 123 (143)
T ss_dssp HHHHTTSCCTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEE
T ss_pred hhhhhhcCCcccccccccchHHHHHcCCCccCEEEEECCCCEEEEEE
Confidence 78888888889999999999999999999999999999999999873
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=3.1e-22 Score=177.24 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=104.7
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec---
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS--- 114 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~--- 114 (438)
.+|+++|+|+ +.+.+|+.++|++++||+|+|+|||+|||+|+.++|.|++++++++++ +.+++|+.
T Consensus 7 ~vG~~aPdF~--------l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~---v~~v~i~snd~ 75 (187)
T d2cvba1 7 PLESPLIDAE--------LPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDY 75 (187)
T ss_dssp CTTCBCCCCE--------EECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCT
T ss_pred CCCCccCccE--------eecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcccc---ceeeeeecccc
Confidence 4799999999 999999999999999999999999999999999999999999999753 78888864
Q ss_pred ----CCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccchhH
Q 013684 115 ----DEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVEL 176 (438)
Q Consensus 115 ----D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~ 176 (438)
+.+.+.++++.+..++......|.+ +.+.+.|++.++|+++|||+ +|++++++.++.
T Consensus 76 ~~~~~~~~e~~~~~~~~~~~~~p~l~D~~--~~~~~~~~v~~~P~~~liD~---~G~i~y~G~idd 136 (187)
T d2cvba1 76 EKYPEDAPEKMAAFAEEHGIFFPYLLDET--QEVAKAYRALRTPEVFLFDE---RRLLRYHGRVND 136 (187)
T ss_dssp TTCGGGSHHHHHHHHHHHTCCSCEEECSS--SHHHHHTTCCEESEEEEECT---TCBEEEEECSSS
T ss_pred ccccccchHHHHHHHHHhCCcceeeechh--hhhcccccccceeeEEEEcC---CCeEEEEeeecC
Confidence 2456778888887665433333544 78999999999999999999 999999877553
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.84 E-value=1.4e-20 Score=165.06 Aligned_cols=118 Identities=23% Similarity=0.381 Sum_probs=101.7
Q ss_pred hcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-CH
Q 013684 213 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-DQ 290 (438)
Q Consensus 213 g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-~~ 290 (438)
+..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.+.+.++++++++.+. ++.|++|++|. +.
T Consensus 33 ~~~~Pdf~l~d~~G~-~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~---------~~~vv~vs~d~~~~ 102 (176)
T d1jfua_ 33 PLKLPDLAFEDADGK-PKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP---------NFEVVAINIDTRDP 102 (176)
T ss_dssp CCBCCCCEEECTTSC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT---------TEEEEEEECCCSCT
T ss_pred CCcCCCeEEECCCcC-EEeHHHhCCCEEEEEeccCcccchHHHHHhhhhcccccccc---------ccccccccccccch
Confidence 446899999 99999 99999999999999999999999999999999999999865 79999999884 57
Q ss_pred HHHHHHHhcCCCcccccCCchhHH----HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 291 TSFESYFGTMPWLALPFGDPTIKE----LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 291 ~~~~~~~~~~~~~~~p~~~d~~~~----l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+.+++|+++.++-.+++..|.... +...|++.++|+++|||++|+|+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~ 156 (176)
T d1jfua_ 103 EKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATI 156 (176)
T ss_dssp THHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEE
T ss_pred hhhhhhHhhhCCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEE
Confidence 789999999886555566554443 44567889999999999999999873
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=2.6e-21 Score=162.51 Aligned_cols=105 Identities=19% Similarity=0.120 Sum_probs=93.8
Q ss_pred CCCCCceeecccc-CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC
Q 013684 222 GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 300 (438)
Q Consensus 222 ~~~g~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 300 (438)
|.+|+ .++.+.+ +||+|+|+|||+||++|+.++|.|+++++ + ++.+++++.+.+......++.+.
T Consensus 6 d~~g~-~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----~---------~~~vi~i~~~~~~~~~~~~~~~~ 71 (136)
T d1z5ye1 6 DNPGQ-FYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----Q---------GIRVVGMNYKDDRQKAISWLKEL 71 (136)
T ss_dssp SSTTC-EECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----T---------TCCEEEEEESCCHHHHHHHHHHH
T ss_pred cCCCc-EecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----h---------hhhhcccccccchhhhHHHHHHc
Confidence 67798 8998888 89999999999999999999999987743 2 57899999999989999999888
Q ss_pred CCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 301 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 301 ~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
++..+++..|.+..+.+.|++.++|+++|||++|+++.+.
T Consensus 72 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~ 111 (136)
T d1z5ye1 72 GNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 111 (136)
T ss_dssp CCCCSEEEEESSCHHHHHHTCCSBSEEEEECTTSCEEEEE
T ss_pred CCccceeecccchhHHHhcccCCcceEEEEcCCCEEEEEE
Confidence 8777777778888999999999999999999999999874
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.82 E-value=1e-20 Score=158.93 Aligned_cols=119 Identities=21% Similarity=0.341 Sum_probs=105.0
Q ss_pred hccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHH
Q 013684 40 MSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN 119 (438)
Q Consensus 40 g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~ 119 (438)
|.++|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.++++++++.+.+ +.+++|+.+++.+
T Consensus 2 G~~~P~f~--------l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~i~~~~~~~ 71 (137)
T d1st9a_ 2 GSDAPNFV--------LEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKI 71 (137)
T ss_dssp CEECCCCE--------EECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCHH
T ss_pred cCcCCCeE--------EECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccccc--cccccccccchhh
Confidence 78899999 9999999999999999999999999999999999999999999998876 9999999999999
Q ss_pred HHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 120 AFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 120 ~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.++++.+++++......|.. ..+++.|++.++|+++|||+ +|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~liD~---~G~i~~~~~ 120 (137)
T d1st9a_ 72 AVHNFMKSYGVNFPVVLDTD--RQVLDAYDVSPLPTTFLINP---EGKVVKVVT 120 (137)
T ss_dssp HHHHHHHHTTCCSCEEEETT--SHHHHHTTCCSSCEEEEECT---TSEEEEEEE
T ss_pred hHHHHHHHcCCCcccccccc--chhhhhhhccccceEEEECC---CCEEEEEEE
Confidence 99999997764322222333 68899999999999999999 999987743
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.82 E-value=6.8e-21 Score=164.37 Aligned_cols=141 Identities=18% Similarity=0.274 Sum_probs=118.0
Q ss_pred hhcCCCCCcc-CCCCCceeecccc--CCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSL--VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~--~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
+|..+|+|++ +.+|+ .++++++ +||+++|+|| ++|||+|..+++.++++++++++. ++.+++|+.|
T Consensus 4 vG~~aPdF~L~~~~G~-~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~---------~~~vv~is~d 73 (160)
T d2cx4a1 4 LGEKAPDFTLPNQDFE-PVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA---------NAEVLAISVD 73 (160)
T ss_dssp TTSBCCCCEECCTTSC-CEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTT---------CCEEEEEESS
T ss_pred CCCCCcCeEeECCCCC-EEehHHHhhCCCEEEEEecccccCCchhhhhhhhhccccccccc---------cccccccccc
Confidence 6899999999 99999 9999997 7999999998 899999999999999999998865 7999999987
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCc----------CceeeEEEECCCCcEEEcccchhhhhccccCCCCCH
Q 013684 288 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV----------QGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE 357 (438)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v----------~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~ 357 (438)
+.+..+++..+.+ +.+++..|.+..+.+.||+ ...|++||||++|+|+++.... .+...
T Consensus 74 -~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~---------~~~~~ 142 (160)
T d2cx4a1 74 -SPWCLKKFKDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTD---------NPLNE 142 (160)
T ss_dssp -CHHHHHHHHHHHT-CSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECS---------STTCC
T ss_pred -chhhhhhhcccce-eeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeC---------CCCCC
Confidence 6677888877766 7888999999999999998 3468999999999999874211 13444
Q ss_pred HHHHHHHHHHHHHhcc
Q 013684 358 AKLEFLEKQMEEEAKN 373 (438)
Q Consensus 358 ~~~~~L~~~i~~~~~~ 373 (438)
..++++.++++++++.
T Consensus 143 ~~~~eil~~l~~l~~e 158 (160)
T d2cx4a1 143 PDYDEVVREANKIAGE 158 (160)
T ss_dssp CCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHccc
Confidence 5567777777776553
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=7e-21 Score=159.40 Aligned_cols=114 Identities=17% Similarity=0.281 Sum_probs=98.0
Q ss_pred hccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHH
Q 013684 40 MSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN 119 (438)
Q Consensus 40 g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~ 119 (438)
|+..++|+ +++.+|+.+++++++||+++|+|||+|||+|+.++|.|.++++++ .++.+++|+.+++.+
T Consensus 1 ~d~~~~f~--------~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~----~~v~~v~v~~~~~~~ 68 (134)
T d1lu4a_ 1 ADERLQFT--------ATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAAN----PAVTFVGIATRADVG 68 (134)
T ss_dssp CGGGGCCE--------EEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC----TTSEEEEEECSSCHH
T ss_pred CCCCCcce--------eECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhh----ccccccccccccchh
Confidence 56778888 999999999999999999999999999999999999999998865 248899999999999
Q ss_pred HHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCccc
Q 013684 120 AFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 120 ~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~ 170 (438)
.++++.++++.....+.|.+ ..+++.|++.++|++++||+ +|+++.
T Consensus 69 ~~~~~~~~~~~~~p~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~ 114 (134)
T d1lu4a_ 69 AMQSFVSKYNLNFTNLNDAD--GVIWARYNVPWQPAFVFYRA---DGTSTF 114 (134)
T ss_dssp HHHHHHHHHTCCSEEEECTT--SHHHHHTTCCSSSEEEEECT---TSCEEE
T ss_pred hhhhhhhhhccccceeeCch--HHHHHHcCCCcCCEEEEEeC---CCeEEE
Confidence 99999987764322222443 67899999999999999999 998764
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=99.80 E-value=1.6e-19 Score=156.46 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=103.0
Q ss_pred hhhhcCCCCCcc-CC----CCCceeeccccCCCEEEEEEecC-CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 013684 210 NLLTNHDRGYLL-GH----PPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 283 (438)
Q Consensus 210 ~~~g~~~~~f~l-~~----~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~ 283 (438)
+++|.++|+|++ +. +++ ++++++++||+++|+||.. |||+|..+++.+.+++++|++. +++|++
T Consensus 1 ~lvG~~aP~F~l~~~~~g~~~~-~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~---------g~~vv~ 70 (166)
T d1we0a1 1 SLIGTEVQPFRAQAFQSGKDFF-EVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL---------GVEVYS 70 (166)
T ss_dssp CCTTCBCCCCEEEEECSSSCCE-EEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT---------TEEEEE
T ss_pred CCCCCcCCCCEEeeecCCccee-EeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhccc---------ceEEEe
Confidence 368999999999 43 334 7999999999999999965 9999999999999999999987 899999
Q ss_pred EecCCCHHHHHHHHhcCC---CcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 284 VSTDRDQTSFESYFGTMP---WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 284 is~d~~~~~~~~~~~~~~---~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
||+| +.+..++|.+++. .+.||++.|...+++++||+. ..|++||||++|+|++..
T Consensus 71 IS~D-~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~ 135 (166)
T d1we0a1 71 VSTD-THFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIE 135 (166)
T ss_dssp EESS-CHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred cccc-cHHHHHHHhhhhhhhcccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEEE
Confidence 9998 5566666666542 378999999999999999983 568899999999998874
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.78 E-value=5.4e-20 Score=153.80 Aligned_cols=107 Identities=19% Similarity=0.315 Sum_probs=93.0
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccC
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY 135 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~ 135 (438)
+.+.+|+.+++++++||+++|+|||+|||+|+.++|.|.++++++++ ..+++|+.+++....++++..+++..++.
T Consensus 10 ~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~----~~~v~v~~~d~~~~~~~~~~~~~~~~~~~ 85 (134)
T d1zzoa1 10 AKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE----VTFVGVAGLDQVPAMQEFVNKYPVKTFTQ 85 (134)
T ss_dssp EEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSCHHHHHHHHHHTTCTTSEE
T ss_pred EEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcc----cccccccccccchhHHHHHHhcCCcceeE
Confidence 88999999999999999999999999999999999999999998743 66888888888999999999887654332
Q ss_pred -CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 136 -SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 136 -~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
.|.+ ..+.+.|++.++|++++||+ +|++...
T Consensus 86 l~D~~--~~~~~~~~v~~~P~~~iiD~---~G~i~~~ 117 (134)
T d1zzoa1 86 LADTD--GSVWANFGVTQQPAYAFVDP---HGNVDVV 117 (134)
T ss_dssp EECTT--CHHHHHTTCCSSSEEEEECT---TCCEEEE
T ss_pred Eeecc--chHHHhcCCCccCeEEEECC---CCeEEEE
Confidence 2433 58999999999999999999 9998654
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.78 E-value=2.9e-19 Score=158.31 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=103.2
Q ss_pred hhcCCCCCc----c-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 212 LTNHDRGYL----L-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 212 ~g~~~~~f~----l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
.+.++|||+ + |.+|+ .+++++++||+++|+|| +.||+.|..+++.+.+++++|++. +++|++||
T Consensus 5 ~~~PAPdFtl~a~l~d~~g~-~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~---------g~~VlgIS 74 (194)
T d1uula_ 5 DLHPAPDFNETALMPNGTFK-KVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI---------GCEVLACS 74 (194)
T ss_dssp TTSBCCCCEEEEECTTSCEE-EEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT---------TEEEEEEE
T ss_pred cCCCCCCCcccccccCCCCc-EEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccC---------ceEEEEEe
Confidence 467899999 6 88899 99999999999999999 899999999999999999999976 89999999
Q ss_pred cCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhcCc------CceeeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDV------QGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~l~~~~~v------~~~P~~~lid~~G~i~~~~ 340 (438)
.| +....+++.+.+ .-+.||++.|..+++++.||+ ...|++||||++|+|++..
T Consensus 75 ~D-s~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~ 140 (194)
T d1uula_ 75 MD-SEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQIT 140 (194)
T ss_dssp SS-CHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred cC-chhhhhhhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEE
Confidence 99 444555665543 247899999999999999999 3578999999999999874
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=99.78 E-value=6.2e-19 Score=153.08 Aligned_cols=119 Identities=21% Similarity=0.258 Sum_probs=101.8
Q ss_pred hhhcCCCCCc----c-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 013684 211 LLTNHDRGYL----L-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284 (438)
Q Consensus 211 ~~g~~~~~f~----l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~i 284 (438)
.+|.++|+|+ + |.+|+ ++++++++||+|+|+|| +.||++|..+++.|.+++++|++. +++|++|
T Consensus 4 kvG~~APdF~~~~~l~d~~g~-~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~---------~~~v~~i 73 (167)
T d1e2ya_ 4 KLNHPAPEFDDMALMPNGTFK-KVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEI---------NTEVISC 73 (167)
T ss_dssp CTTSBCCCCEEEEECSSSCEE-EEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTT---------TEEEEEE
T ss_pred cCCCCCCCCcccccccCCCCc-EEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcC---------ceEEEee
Confidence 4799999998 6 88999 99999999999999999 999999999999999999999976 8999999
Q ss_pred ecCCCHHHHHHHHhcCC------CcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 285 STDRDQTSFESYFGTMP------WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 285 s~d~~~~~~~~~~~~~~------~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
|.|. .....++..... -+.+++..|....+.+.|++. .+|++||||++|+|++..
T Consensus 74 s~d~-~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~ 140 (167)
T d1e2ya_ 74 SCDS-EYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQII 140 (167)
T ss_dssp ESSC-HHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred cCCc-HHhHHHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEE
Confidence 9984 444455544321 267888889999999999982 467999999999998774
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.78 E-value=7.1e-19 Score=153.00 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=102.3
Q ss_pred hhcCCCCCcc-CCCC---------------CceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCC
Q 013684 212 LTNHDRGYLL-GHPP---------------DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGD 274 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g---------------~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~ 274 (438)
+|+.+|+|++ +.+| + .+++++++||+++|+|| +.|||+|..+++.+.+++++|++.
T Consensus 5 vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~-~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~------ 77 (169)
T d2bmxa1 5 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFT-TITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR------ 77 (169)
T ss_dssp TTCBCCCCEEEEECSSCGGGSCCSSGGGGEE-EEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT------
T ss_pred CCCCCCCCEEeeccCCccccccccccccccc-EeeHHHHCCCeEEEEEecCCCCcccccccccccccccccccc------
Confidence 6999999999 7776 5 78899999999999999 899999999999999999999976
Q ss_pred CCCCEEEEEEecCCCHHHHHHHHhcC---CCcccccCCchhHHHHHhcCc-----CceeeEEEECCCCcEEEcc
Q 013684 275 ALEDFEVVFVSTDRDQTSFESYFGTM---PWLALPFGDPTIKELTKYFDV-----QGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 275 ~~~~~~vv~is~d~~~~~~~~~~~~~---~~~~~p~~~d~~~~l~~~~~v-----~~~P~~~lid~~G~i~~~~ 340 (438)
++++++|+.|. ....+++.+.+ ..+.||++.|.+.+++++||| ...|++||||++|+|++..
T Consensus 78 ---g~~vv~is~d~-~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~~ 147 (169)
T d2bmxa1 78 ---DAQILGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVS 147 (169)
T ss_dssp ---TEEEEEEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEE
T ss_pred ---Ccceeeccccc-hhhhhhhcccccccccceEEEEeccHHHHHHHcCCCccCCccceeEEEEcCCCEEEEEE
Confidence 89999999985 44444444433 347899999999999999999 6889999999999998864
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.76 E-value=1.7e-18 Score=151.62 Aligned_cols=121 Identities=21% Similarity=0.240 Sum_probs=101.3
Q ss_pred hccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-CCH
Q 013684 40 MSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-EDL 118 (438)
Q Consensus 40 g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-~~~ 118 (438)
+.++|+|+ +.+.+|+.++|++++||+|+|+||++||++|+.+.+.++++++++...+ +.|++|++| ++.
T Consensus 33 ~~~~Pdf~--------l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d~~~~ 102 (176)
T d1jfua_ 33 PLKLPDLA--------FEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDP 102 (176)
T ss_dssp CCBCCCCE--------EECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCSCT
T ss_pred CCcCCCeE--------EECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccc--cccccccccccch
Confidence 44688999 9999999999999999999999999999999999999999999998865 999999987 467
Q ss_pred HHHHHhHhcCCcccccC-CCh--HHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 119 NAFNNYRACMPWLAVPY-SDL--ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 119 ~~~~~~~~~~~~~~~~~-~d~--~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.++++.++.++...++ .+. .....+...|++.++|+++|||+ +|+++.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~---~G~I~~~~~ 157 (176)
T d1jfua_ 103 EKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDP---QGCEIATIA 157 (176)
T ss_dssp THHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECT---TSBEEEEEE
T ss_pred hhhhhhHhhhCCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcC---CCEEEEEEE
Confidence 78999998877544322 122 23356667788999999999999 999987643
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.76 E-value=1.2e-18 Score=149.00 Aligned_cols=117 Identities=11% Similarity=0.165 Sum_probs=98.0
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCC-EEEEE-EecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLY-FSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk-~vll~-F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
+|.++|+|++ +.+|+ .+++++++|| +++|. |+++|||+|..+++.+.++++++.+. +++|++|+.|
T Consensus 4 vG~~aPdF~l~d~~G~-~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~---------~~~vi~vs~d- 72 (153)
T d1xvwa1 4 VGATAPDFTLRDQNQQ-LVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND---------DSAALAISVG- 72 (153)
T ss_dssp TTSBCCCCEEECTTSC-EEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS---------SEEEEEEESC-
T ss_pred CcCCCcCeEEECCCCC-EEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhccc---------ccccccccch-
Confidence 6899999999 99999 9999999995 55555 45899999999999999999998755 8999999997
Q ss_pred CHHHHHHHHhcCCCcccccCCc--hhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 289 DQTSFESYFGTMPWLALPFGDP--TIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~~~~~~~~~~~~~~~~p~~~d--~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
+.+.+++|.++++ +.+|+..+ ....+.+.||+. ..|++||||++|+|++.+
T Consensus 73 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~ 131 (153)
T d1xvwa1 73 PPPTHKIWATQSG-FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAE 131 (153)
T ss_dssp CHHHHHHHHHHHT-CCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEE
T ss_pred hhhHHHHHhhhhc-cceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEE
Confidence 6778888988877 56666544 467899999983 345799999999998764
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=99.75 E-value=1.8e-18 Score=150.30 Aligned_cols=120 Identities=18% Similarity=0.229 Sum_probs=101.8
Q ss_pred hhhcCCCCCcc-CCCCC----ceeeccccCCC-EEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 013684 211 LLTNHDRGYLL-GHPPD----EKVPVSSLVGK-TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 283 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~----~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~ 283 (438)
++|..+|||++ +.+|. +.++|++++|| +++|+|| +.|||.|..+++.+++.+++|++. +++|++
T Consensus 2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~---------g~~Vvg 72 (170)
T d1zofa1 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK---------GFNVIG 72 (170)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT---------TEEEEE
T ss_pred CCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccC---------CeeEec
Confidence 57999999999 77763 16999999996 8999999 899999999999999999999977 899999
Q ss_pred EecCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhcCcC-----ceeeEEEECCCCcEEEcc
Q 013684 284 VSTDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 284 is~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~~ 340 (438)
||.|. ....++|.+.. ..+.+|+..|...++.+.||+. ..|++||||++|+|++..
T Consensus 73 is~d~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~~ 139 (170)
T d1zofa1 73 VSIDS-EQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAV 139 (170)
T ss_dssp EESSC-HHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEE
T ss_pred ccccc-hhhHHHHHhhhhhcccccCcccccccccccHHHHHcCCCccccceeEEEEEEcCCCeEEEEE
Confidence 99984 44555555443 2478899999999999999993 678999999999998763
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.75 E-value=3.2e-19 Score=150.83 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=98.6
Q ss_pred HhhccchhHHHHHhhcccccC--CCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTK--EIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~--~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
.+|.++|+|+ +.+ .+|+.++++.++||+++|+||++||++|+.++|.|+++++++++. +.+++|+.+
T Consensus 2 k~g~~aP~~~--------~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~---~~~i~v~~~ 70 (143)
T d2b5xa1 2 KLRQPMPELT--------GEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMP 70 (143)
T ss_dssp CTTCBCCCCC--------CCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECC
T ss_pred CCCCcCCCCc--------CCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc---ccceeEEee
Confidence 3789999998 555 488888999999999999999999999999999999999999753 788888874
Q ss_pred -----CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 116 -----EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 -----~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.+.+.++++.+++++....+.|.+ ..+.+.|++.++|++++||+ +|+++++..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~p~~~D~~--~~~~~~~~v~~~P~~~~id~---~G~i~~~~~ 128 (143)
T d2b5xa1 71 RSEDDLDPGKIKETAAEHDITQPIFVDSD--HALTDAFENEYVPAYYVFDK---TGQLRHFQA 128 (143)
T ss_dssp CSTTTSSHHHHHHHHHHTTCCSCEEECSS--CHHHHHTCCCCSSEEEEECT---TCBEEEEEE
T ss_pred ccccccchhhhhhHHHhhccCccccccCc--cchHHHcCCCcCCEEEEECC---CCEEEEEEE
Confidence 345667888887765322222443 68899999999999999999 999987754
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.75 E-value=3.5e-19 Score=150.52 Aligned_cols=111 Identities=16% Similarity=0.207 Sum_probs=93.7
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-----CCHHHHHHhHhcCCc
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----EDLNAFNNYRACMPW 130 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-----~~~~~~~~~~~~~~~ 130 (438)
+++.+|+.+++++++||+++|+|||+|||+|+.++|.|++++++++..+ +.+++|+.+ .....+.++.....+
T Consensus 8 l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 85 (143)
T d2fy6a1 8 LKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWYAGLNY 85 (143)
T ss_dssp CEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTT--SEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred eECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCC--cEEEEEeeeecccccchhhhhhhhhhcCC
Confidence 7799999999999999999999999999999999999999999998875 889999864 244556677777766
Q ss_pred ccccCC-ChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 131 LAVPYS-DLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 131 ~~~~~~-d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
..+++. |.. ..+++.|++.++|++++||+ +|+++.+..
T Consensus 86 ~~~~~~~D~~--~~~~~~~~v~~~P~~~liD~---~G~i~~~~~ 124 (143)
T d2fy6a1 86 PKLPVVTDNG--GTIAQSLNISVYPSWALIGK---DGDVQRIVK 124 (143)
T ss_dssp TTSCEEECTT--CHHHHHTTCCSSSEEEEECT---TSCEEEEEE
T ss_pred cccccccccc--hHHHHHcCCCccCEEEEECC---CCEEEEEEE
Confidence 555432 333 68999999999999999999 999987643
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=6.2e-19 Score=151.21 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=100.4
Q ss_pred hhcCCCCCcc-CCCCCceeecccc--CCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSL--VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~--~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
+|..+|+|+| +.+|+ .++++++ +|++|+++|| +.|||+|..+++.+.+.+++|++. +.+++||.|
T Consensus 7 vG~~aP~f~L~~~~g~-~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~----------~~~~~is~d 75 (156)
T d2a4va1 7 IGDPIPDLSLLNEDND-SISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY----------AAVFGLSAD 75 (156)
T ss_dssp TTCBCCSCEEECTTSC-EEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT----------CEEEEEESC
T ss_pred CCCCCCCeEEECCCCC-EEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc----------cceeeeccc
Confidence 7999999999 99999 9999998 4678888888 889999999999999999999753 678999988
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceee-----EEEECCCCcEEEcc
Q 013684 288 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPC-----LVIIGPEGKTVTKQ 340 (438)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~-----~~lid~~G~i~~~~ 340 (438)
+.+..++|.++++ +.||++.|.+.++.++||+...|. .++|+.+|+++.+.
T Consensus 76 -~~~~~~~f~~~~~-l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~ 131 (156)
T d2a4va1 76 -SVTSQKKFQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKR 131 (156)
T ss_dssp -CHHHHHHHHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEE
T ss_pred -hhhhHHhhhcccC-ccceeccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEE
Confidence 7788899999888 889999999999999999865552 44455799998874
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=99.74 E-value=7e-18 Score=148.07 Aligned_cols=121 Identities=14% Similarity=0.219 Sum_probs=103.0
Q ss_pred hhhhcCCCCCcc-C-CCCC-ceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 210 NLLTNHDRGYLL-G-HPPD-EKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 210 ~~~g~~~~~f~l-~-~~g~-~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
+++|.++|+|++ . .+|+ .++++++++||+++|+|| +.|||.|..+++.+++.+++|.+. +++|++||
T Consensus 1 ~lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~---------~~~v~gIS 71 (186)
T d1n8ja_ 1 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL---------GVDVYSVS 71 (186)
T ss_dssp CCTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT---------TEEEEEEE
T ss_pred CCCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccc---------cEEEEecc
Confidence 368999999997 3 3443 178999999999999999 789999999999999999999976 89999999
Q ss_pred cCCCHHHHHHHHhcCC---CcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFGTMP---WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~~---~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
+| +.+..++|.++.. .+.||++.|.+.++++.||+. ..|++||||++|+|++..
T Consensus 72 ~D-s~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~ 134 (186)
T d1n8ja_ 72 TD-THFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE 134 (186)
T ss_dssp SS-CHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred cc-CHHHHHHHhccccccccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEe
Confidence 98 5566666666543 578999999999999999993 468899999999998864
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.73 E-value=8.9e-18 Score=144.15 Aligned_cols=115 Identities=18% Similarity=0.262 Sum_probs=100.8
Q ss_pred CCCCCcc----CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 215 HDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 215 ~~~~f~l----~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
.+|+|++ +.+|+ .++|++++||+++|+|| +.|||.|..+++.+++++++|.+. +.+|++||.| +
T Consensus 2 ~AP~F~l~~~~~~~~~-~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~---------~~~vigIS~d-~ 70 (158)
T d1zyea1 2 HAPYFKGTAVVSGEFK-EISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV---------NCEVVAVSVD-S 70 (158)
T ss_dssp BCCCCEEEEECSSSEE-EEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT---------TEEEEEEESS-C
T ss_pred CCCCCccceeeCCCcc-EEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcC---------CceEEeccCc-C
Confidence 6899985 55667 89999999999999999 889999999999999999999976 8999999999 5
Q ss_pred HHHHHHHHhcC------CCcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~------~~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
....++|.+.. ..+.||++.|...++.+.||+. +.|++||||++|+|++..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~ 133 (158)
T d1zyea1 71 HFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLS 133 (158)
T ss_dssp HHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHHHhhhHhhccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEE
Confidence 56667777653 3588999999999999999984 567899999999999864
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.2e-18 Score=145.85 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=87.2
Q ss_pred CCCCCEEecccc-CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccC-
Q 013684 58 KEIGEEVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY- 135 (438)
Q Consensus 58 ~~~g~~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~- 135 (438)
|..|+.++++++ +||+|+|+|||+||++|+.++|.|+++++ .+ +.+++++.+.+......+..+.++...+.
T Consensus 6 d~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~ 79 (136)
T d1z5ye1 6 DNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKAISWLKELGNPYALSL 79 (136)
T ss_dssp SSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----TT--CCEEEEEESCCHHHHHHHHHHHCCCCSEEE
T ss_pred cCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----hh--hhhcccccccchhhhHHHHHHcCCccceee
Confidence 667999999998 89999999999999999999999988754 33 88999999999888888888665443321
Q ss_pred CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 136 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 136 ~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.|.. ..+.+.|++.++|+++|||+ +|+++.+..
T Consensus 80 ~d~~--~~~~~~~~v~~~P~~~liD~---~G~i~~~~~ 112 (136)
T d1z5ye1 80 FDGD--GMLGLDLGVYGAPETFLIDG---NGIIRYRHA 112 (136)
T ss_dssp EESS--CHHHHHHTCCSBSEEEEECT---TSCEEEEEE
T ss_pred cccc--hhHHHhcccCCcceEEEEcC---CCEEEEEEE
Confidence 1333 67889999999999999999 999997754
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.71 E-value=1.3e-18 Score=147.11 Aligned_cols=103 Identities=14% Similarity=0.192 Sum_probs=85.9
Q ss_pred CCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCccccc-CCChH
Q 013684 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVP-YSDLE 139 (438)
Q Consensus 61 g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~-~~d~~ 139 (438)
+..+++++++||+++|+||++||++|+.++|.+.++++.+ ++++++|+.+.+....+++...+++...+ ..|..
T Consensus 21 ~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 95 (144)
T d1knga_ 21 VPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK-----RFQLVGINYKDAADNARRFLGRYGNPFGRVGVDAN 95 (144)
T ss_dssp CCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT-----TSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETT
T ss_pred CCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc-----CceeEEEEeeechHHHHHHHHHcCCcccccccccc
Confidence 3678899999999999999999999999999998876553 48899999999999999988876644332 21333
Q ss_pred HHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 140 TKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 140 ~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
..+.+.|++.++|+++|||+ +|+++.+..
T Consensus 96 --~~~~~~~~v~~~P~~~liD~---~G~i~~~~~ 124 (144)
T d1knga_ 96 --GRASIEWGVYGVPETFVVGR---EGTIVYKLV 124 (144)
T ss_dssp --SHHHHHTTCCSSCEEEEECT---TSBEEEEEE
T ss_pred --chhhhhcCccccceEEEEcC---CCeEEEEEe
Confidence 67899999999999999999 999998754
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.5e-17 Score=147.42 Aligned_cols=119 Identities=19% Similarity=0.220 Sum_probs=104.1
Q ss_pred hhhcCCCCCcc----CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 211 LLTNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 211 ~~g~~~~~f~l----~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+|| +.|||.|..++..+.+++++|++. +++|++||
T Consensus 6 ~VG~~AP~F~l~~~~d~~~~-~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~---------g~~vigIS 75 (197)
T d1qmva_ 6 RIGKPAPDFKATAVVDGAFK-EVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKL---------GCEVLGVS 75 (197)
T ss_dssp CTTSBCCCCEEEEEETTEEE-EEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT---------TEEEEEEE
T ss_pred cCCCcCCCCCCcceeCCCCc-EEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccC---------CcEEEEEe
Confidence 47999999976 56777 89999999999999999 889999999999999999999976 89999999
Q ss_pred cCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
.| +....++|.++. .-+.||++.|..++++++||+. ..|++|+||++|+|++..
T Consensus 76 ~D-~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~ 141 (197)
T d1qmva_ 76 VD-SQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQIT 141 (197)
T ss_dssp SS-CHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred cC-CHHHHHhhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEEE
Confidence 99 445667776643 2488999999999999999993 578999999999998864
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=99.70 E-value=3.2e-17 Score=148.72 Aligned_cols=119 Identities=11% Similarity=0.163 Sum_probs=100.3
Q ss_pred hhhcCCCCCcc-CCCCCceeecccc---CCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSL---VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~---~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
++|..+|+|++ +.+|+ +.++++ +||+++|+|| +.|||.|..+++.+.+++++|+++ +++||+||
T Consensus 2 lIGd~aPdF~l~t~~G~--i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~---------g~~vigiS 70 (237)
T d2zcta1 2 LIGERFPEMEVTTDHGV--IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL---------GVDLIGLS 70 (237)
T ss_dssp CTTSBCCCEEEEETTEE--EEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHT---------TEEEEEEE
T ss_pred CCCCCCCCeEEEcCCCC--EEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccC---------Ccceeecc
Confidence 58999999999 88885 666654 8999999999 899999999999999999999987 89999999
Q ss_pred cCCC--HHHHHHHHhc--CCCcccccCCchhHHHHHhcCc-------CceeeEEEECCCCcEEEcc
Q 013684 286 TDRD--QTSFESYFGT--MPWLALPFGDPTIKELTKYFDV-------QGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~--~~~~~~~~~~--~~~~~~p~~~d~~~~l~~~~~v-------~~~P~~~lid~~G~i~~~~ 340 (438)
+|.. ...|.+..+. ..++.||+..|.+.++++.||+ ...|++||||++|+|+...
T Consensus 71 ~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~ 136 (237)
T d2zcta1 71 VDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTML 136 (237)
T ss_dssp SSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEE
T ss_pred CCcHHHHHHHhhhhhhhcccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEE
Confidence 9953 2344444332 3458999999999999999998 4689999999999998763
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.4e-17 Score=143.94 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=97.5
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
.+|..+|+|+| +.+|+ .++|++++||+++|+|| +.|||+|..+++.|++++.++. ++++++||.|
T Consensus 19 ~vG~~APdF~L~~~~g~-~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~-----------~~~vv~Is~d- 85 (164)
T d1qxha_ 19 QAGSKAQTFTLVAKDLS-DVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID-----------NTVVLCISAD- 85 (164)
T ss_dssp CTTSBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST-----------TEEEEEEESS-
T ss_pred CCCCCCCCeEEECCCCC-EEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc-----------cceeeeEEcC-
Confidence 37999999999 99999 99999999999999998 6799999999999988876543 6899999998
Q ss_pred CHHHHHHHHhcCCCcccccC--CchhHHHHHhcCcC---------ceeeEEEECCCCcEEEccc
Q 013684 289 DQTSFESYFGTMPWLALPFG--DPTIKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQG 341 (438)
Q Consensus 289 ~~~~~~~~~~~~~~~~~p~~--~d~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~~~ 341 (438)
+....+++.+.++ +.+++. .|...++.+.||+. ..|++||||++|+|++.+.
T Consensus 86 ~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~ 148 (164)
T d1qxha_ 86 LPFAQSRFCGAEG-LNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQL 148 (164)
T ss_dssp CHHHHTTCCSSTT-CTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred CHHHHHHHHHHhC-CCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEE
Confidence 5666777777666 555554 45678999999973 2478999999999998754
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.68 E-value=2.4e-17 Score=143.60 Aligned_cols=122 Identities=18% Similarity=0.290 Sum_probs=95.5
Q ss_pred HhhhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCCh-hhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 209 INLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 209 ~~~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
...++.++|+|++ +.+|+ .+++++++||++||+||.+||| +|...++.|.++++.+++. +.++.+|+||+
T Consensus 4 ~~p~~~~~p~F~l~d~~G~-~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~-------~~~v~~v~isi 75 (172)
T d1xzoa1 4 KDPLNYEVEPFTFQNQDGK-NVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAE-------NIDVRIISFSV 75 (172)
T ss_dssp CSCCCEECCCCEEECTTSC-EEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHT-------TCCCEEEEEES
T ss_pred cCCCCCcCCCeEEEcCCCC-EEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccc-------ccccccccccc
Confidence 3456778999999 99999 9999999999999999999997 7999999999999999865 56899999999
Q ss_pred CC---CHHHHHHHHhcCCCccc---ccCCchh-----HHHHHhcCc-----------CceeeEEEECCCCcEEEc
Q 013684 287 DR---DQTSFESYFGTMPWLAL---PFGDPTI-----KELTKYFDV-----------QGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 287 d~---~~~~~~~~~~~~~~~~~---p~~~d~~-----~~l~~~~~v-----------~~~P~~~lid~~G~i~~~ 339 (438)
|. +.+.+++|.+.++ +.+ .++.+.. ....+.|++ ...|.+||||++|+++..
T Consensus 76 Dp~~Dtp~~l~~y~~~~~-~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~ 149 (172)
T d1xzoa1 76 DPENDKPKQLKKFAANYP-LSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD 149 (172)
T ss_dssp CTTTCCHHHHHHHHTTSC-CCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred ccccchHHHHHHHHHHhc-cccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEE
Confidence 84 4677889988766 222 2322211 223344443 234689999999999965
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=99.68 E-value=3.5e-17 Score=141.44 Aligned_cols=120 Identities=21% Similarity=0.202 Sum_probs=95.7
Q ss_pred HhhccchhHHHHHhhcccccC----CCCCEEeccccCCCEEEEEEecc-CCccchhhHHHHHHHHHHHhcCCCCEEEEEE
Q 013684 38 LIMSLSQWYVQQLRRRMTSTK----EIGEEVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 112 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~----~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~v 112 (438)
+||.++|+|+ +++ .++++++|++++||+++|+||.. |||+|..+++.|++++++|++.| ++|++|
T Consensus 2 lvG~~aP~F~--------l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g--~~vv~I 71 (166)
T d1we0a1 2 LIGTEVQPFR--------AQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSV 71 (166)
T ss_dssp CTTCBCCCCE--------EEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CCCCcCCCCE--------EeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccc--eEEEec
Confidence 6899999999 664 45568999999999999999955 99999999999999999999987 999999
Q ss_pred ecCCCHHHHHHhHhcC----CcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 113 SSDEDLNAFNNYRACM----PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 113 s~D~~~~~~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.| +.+..+++.+++ ++.+....|.+ .++++.||+. ..|++||||+ +|+|.+...
T Consensus 72 S~D-~~~~~~~~~~~~~~~~~~~fpll~D~~--~~v~~~ygv~~~~~~~~~r~tfvID~---~G~I~~~~i 136 (166)
T d1we0a1 72 STD-THFVHKAWHENSPAVGSIEYIMIGDPS--QTISRQFDVLNEETGLADRGTFIIDP---DGVIQAIEI 136 (166)
T ss_dssp ESS-CHHHHHHHHHSCHHHHTCCSEEEECTT--CHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEEE
T ss_pred ccc-cHHHHHHHhhhhhhhcccccccccCcc--cHHHHHhCCCccccCcccceEEEECC---CCcEEEEEE
Confidence 998 445555555443 22222223544 7899999884 5788999999 999977643
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.67 E-value=8.7e-18 Score=144.54 Aligned_cols=120 Identities=14% Similarity=0.192 Sum_probs=99.3
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEecccc--CCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDL--EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~--~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
.+|+++|+|+ +.+.+|+.++|+++ +||+++|+|| ++|||+|..+++.|+++++++++.+ +.+++|+.
T Consensus 3 ~vG~~aPdF~--------L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~ 72 (160)
T d2cx4a1 3 ELGEKAPDFT--------LPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISV 72 (160)
T ss_dssp CTTSBCCCCE--------ECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTC--CEEEEEES
T ss_pred cCCCCCcCeE--------eECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccc--cccccccc
Confidence 4799999999 99999999999998 7999999998 9999999999999999999998876 89999998
Q ss_pred CCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc----------CccceEEEecCCCCCCCcccccc
Q 013684 115 DEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI----------EGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 115 D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v----------~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
| +.+..+++..+.+.......|.+ ..+.+.|++ ...|+++|||+ +|+|++...
T Consensus 73 d-~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~~~~~flId~---~G~I~~~~~ 135 (160)
T d2cx4a1 73 D-SPWCLKKFKDENRLAFNLLSDYN--REVIKLYNVYHEDLKGLKMVAKRAVFIVKP---DGTVAYKWV 135 (160)
T ss_dssp S-CHHHHHHHHHHHTCSSEEEECTT--SHHHHHTTCEEEEETTEEEEECCEEEEECT---TSBEEEEEE
T ss_pred c-chhhhhhhcccceeeEEEeecCC--cchHHHcCccccccccccccceeeEEEEcC---CCEEEEEEE
Confidence 7 56777777765543222222443 678888987 35789999999 999987754
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.66 E-value=7.6e-17 Score=139.04 Aligned_cols=116 Identities=10% Similarity=0.050 Sum_probs=91.7
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|+| +.+|+ .+++++++||+++|.|| +.|||.|..+++.+.+.+++++ ++.+++|+.| +
T Consensus 18 vG~~aPdF~L~~~~g~-~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~-----------~~~vv~Is~d-~ 84 (163)
T d1psqa_ 18 VGDKALDFSLTTTDLS-KKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD-----------NTVVLTVSMD-L 84 (163)
T ss_dssp TTSBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT-----------TEEEEEEESS-C
T ss_pred CCCCCCCeEEECCCCC-EEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc-----------ccceEEEEec-c
Confidence 6999999999 99999 99999999999999999 6799999999998887766553 5899999988 4
Q ss_pred HHHHHHHHhcCCCccccc-CCchhHHHHHhcCcCc------eeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPF-GDPTIKELTKYFDVQG------IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~-~~d~~~~l~~~~~v~~------~P~~~lid~~G~i~~~~ 340 (438)
....+++....+....+. ..+....+.+.||+.. .+++||||++|+|++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~ 142 (163)
T d1psqa_ 85 PFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVE 142 (163)
T ss_dssp HHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEE
T ss_pred HHHHHHHHHHcCCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEE
Confidence 455556665544233333 3345678999999842 23689999999999875
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=1.9e-17 Score=141.33 Aligned_cols=122 Identities=11% Similarity=0.094 Sum_probs=96.3
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCC-EEEE-EEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGK-VTAL-YFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk-~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
.+|+++|+|+ +.+.+|+.++|++++|| ++++ +|+++|||+|+.+++.|++++++++..| ++|++|+.|
T Consensus 3 ~vG~~aPdF~--------l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~--~~vi~vs~d 72 (153)
T d1xvwa1 3 NVGATAPDFT--------LRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD--SAALAISVG 72 (153)
T ss_dssp CTTSBCCCCE--------EECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS--EEEEEEESC
T ss_pred CCcCCCcCeE--------EECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccc--cccccccch
Confidence 4799999999 99999999999999985 4444 5559999999999999999999998776 999999987
Q ss_pred CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 116 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+..+++.++.++......+.+....+.+.|++. ..|+++|||+ +|+|.+...
T Consensus 73 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~---~G~I~~~~~ 132 (153)
T d1xvwa1 73 -PPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDR---SGIIRFAEM 132 (153)
T ss_dssp -CHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECT---TSBEEEEEE
T ss_pred -hhhHHHHHhhhhccceeEEecccccchhHHHhhhhhhccCceeeeEEEECC---CCEEEEEEE
Confidence 56777888876553322222332236788999874 3568999999 999976543
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=99.65 E-value=8.4e-17 Score=139.38 Aligned_cols=124 Identities=14% Similarity=0.138 Sum_probs=94.5
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|.+||+|+ ... ++.|.+|+.++|++++||+|+|+|| ++||++|..+++.|+++++++++.| ++|++||.|.
T Consensus 4 kvG~~APdF~---~~~-~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~--~~v~~is~d~ 77 (167)
T d1e2ya_ 4 KLNHPAPEFD---DMA-LMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEIN--TEVISCSCDS 77 (167)
T ss_dssp CTTSBCCCCE---EEE-ECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESSC
T ss_pred cCCCCCCCCc---ccc-cccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCc--eEEEeecCCc
Confidence 5899999998 111 1458899999999999999999999 9999999999999999999999987 9999999985
Q ss_pred CHHHHHHhHhcCC----cccccC---CChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 117 DLNAFNNYRACMP----WLAVPY---SDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~~~~~~~~~~~----~~~~~~---~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
. ....++..+.. -..+++ .|.. ..+.+.|++. .+|++||||+ +|+|++...
T Consensus 78 ~-~~~~~~~~~~~~~~~~~~~~~~~l~d~~--~~~~~~y~v~~~~~g~~~r~tfvID~---~G~Ir~~~~ 141 (167)
T d1e2ya_ 78 E-YSHLQWTSVDRKKGGLGPMAIPMLADKT--KAIARAYGVLDEDSGVAYRGVFIIDP---NGKLRQIII 141 (167)
T ss_dssp H-HHHHHHHHSCGGGTCCCCCSSCEEECTT--CHHHHHHTCEETTTTEECEEEEEECT---TSBEEEEEE
T ss_pred H-HhHHHHHhhHHHhcccccccccccccch--hHHHHHcCCCcccCCCceeEEEEECC---CCEEEEEEE
Confidence 3 33334433221 111222 1333 6788888872 4789999999 999976643
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.65 E-value=9.4e-17 Score=138.90 Aligned_cols=116 Identities=15% Similarity=0.137 Sum_probs=88.1
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEec-CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
.+|..+|+|+| +.+|+ .+++++++||+++|+||. .|||.|..+++.|.+. +.+. +++|++|+.|
T Consensus 18 ~iG~~aP~F~L~~~~g~-~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~---~~~~---------g~~vv~Is~d- 83 (166)
T d1xvqa_ 18 AVGSPAPAFTLTGGDLG-VISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDER---AAAS---------GATVLCVSKD- 83 (166)
T ss_dssp CTTSBCCCCEEECTTSC-EEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHH---HHHT---------TCEEEEEESS-
T ss_pred CCcCCCCCeEEECCCCC-EEehHHhCCcEEEEEeeecccccccHHHHHHHhhh---cccc---------cccccccccc-
Confidence 47899999999 99999 999999999999999994 5899999998877554 4443 6899999998
Q ss_pred CHHHHHHHHhcCCCcccccCCchhHHHHHhcCcC---------ceeeEEEECCCCcEEEcc
Q 013684 289 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~~ 340 (438)
+....+++.+.+.........+....+.+.||+. ..|++||||++|+|++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~ 144 (166)
T d1xvqa_ 84 LPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTE 144 (166)
T ss_dssp CHHHHTTCC------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEE
T ss_pred hHHHHHHHHHHhCCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEE
Confidence 4556666766655333333445667788888873 246899999999999875
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=1.1e-16 Score=138.84 Aligned_cols=120 Identities=18% Similarity=0.275 Sum_probs=95.2
Q ss_pred HhhccchhHHHHHhhcccccCCCC---------------CEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHh
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIG---------------EEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELR 101 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g---------------~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~ 101 (438)
.+|+++|+|+ +.+..| +.++|++++||+++|+|| ++|||+|..+++.|.+.+++++
T Consensus 4 ~vGd~aPdF~--------l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~ 75 (169)
T d2bmxa1 4 TIGDQFPAYQ--------LTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFE 75 (169)
T ss_dssp CTTCBCCCCE--------EEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCCE--------EeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCcccccccccccccccccc
Confidence 4899999999 777666 689999999999999999 9999999999999999999999
Q ss_pred cCCCCEEEEEEecCCCHHHHHHhHhcCC---ccccc-CCChHHHHHHhhhcCc-----CccceEEEecCCCCCCCccccc
Q 013684 102 NNGSDFEVVFVSSDEDLNAFNNYRACMP---WLAVP-YSDLETKKALNRKFDI-----EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 102 ~~~~~~~iv~vs~D~~~~~~~~~~~~~~---~~~~~-~~d~~~~~~l~~~~~v-----~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.| +++++||.|.. .+..++.+.+. ...++ ..|.+ .++++.||+ ...|+++|||+ +|+|.+..
T Consensus 76 ~~g--~~vv~is~d~~-~~~~~~~~~~~~~~~~~f~ll~D~~--~~v~~~ygv~~~~~~~~r~~fvID~---~G~I~~~~ 147 (169)
T d2bmxa1 76 DRD--AQILGVSIDSE-FAHFQWRAQHNDLKTLPFPMLSDIK--RELSQAAGVLNADGVADRVTFIVDP---NNEIQFVS 147 (169)
T ss_dssp TTT--EEEEEEESSCH-HHHHHHHHHCTTGGGCCSCEEECTT--SHHHHHHTCBCTTSSBCEEEEEECT---TSBEEEEE
T ss_pred ccC--cceeeccccch-hhhhhhcccccccccceEEEEeccH--HHHHHHcCCCccCCccceeEEEEcC---CCEEEEEE
Confidence 987 99999999853 33333333221 11122 22443 789999998 67899999999 99997654
Q ss_pred c
Q 013684 173 G 173 (438)
Q Consensus 173 ~ 173 (438)
.
T Consensus 148 ~ 148 (169)
T d2bmxa1 148 A 148 (169)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.5e-16 Score=141.69 Aligned_cols=119 Identities=13% Similarity=0.199 Sum_probs=99.9
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCC-CEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVG-KTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
++|..+|+|++ +.+|+ ++++++.| |+++|+|| +.|||.|..++..+++.+++|++. ++++++||+|
T Consensus 2 ~VGd~APdF~l~~~~G~--v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~---------g~~v~giS~D 70 (220)
T d1prxa_ 2 LLGDVAPNFEANTTVGR--IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR---------NVKLIALSID 70 (220)
T ss_dssp CTTCBCCCCEEEETTEE--EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT---------TEEEEEEESS
T ss_pred CCCCCCCCcEeecCCCC--EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcc---------cceeeccccc
Confidence 47999999999 88774 89999988 79999999 689999999999999999999976 8999999999
Q ss_pred CC--HHHHHHHHhc------CCCcccccCCchhHHHHHhcCcC------------ceeeEEEECCCCcEEEcc
Q 013684 288 RD--QTSFESYFGT------MPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 288 ~~--~~~~~~~~~~------~~~~~~p~~~d~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~~ 340 (438)
.. ...|.+.+.. ..-+.||+..|.+.+++++||+- ..+++||||++|+|++..
T Consensus 71 s~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~ 143 (220)
T d1prxa_ 71 SVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSI 143 (220)
T ss_dssp CHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEE
T ss_pred cccchhhhhhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEE
Confidence 53 2334443331 12388999999999999999984 458999999999998864
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.64 E-value=5.1e-16 Score=134.55 Aligned_cols=135 Identities=17% Similarity=0.236 Sum_probs=106.4
Q ss_pred CCCCCcc-C----CCCCceeeccccCC-CEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 215 HDRGYLL-G----HPPDEKVPVSSLVG-KTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 215 ~~~~f~l-~----~~g~~~~~l~~~~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
++|||++ + .+++ ++++++++| |+++|+|| +.|||.|..++..+++.+++|++. +++||+||.|
T Consensus 1 kAPdF~l~~~~gd~~~~-~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~---------g~~vigIS~D 70 (170)
T d2h01a1 1 QAPSFKAEAVFGDNTFG-EVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER---------NVELLGCSVD 70 (170)
T ss_dssp BCCCCEEEEECTTSCEE-EEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT---------TEEEEEEESS
T ss_pred CCCCeEeeeecCCCCcc-EEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcC---------CeeEecccCC
Confidence 4799998 3 4455 799999998 79999999 899999999999999999999986 8999999999
Q ss_pred CCHHHHHHHHhcC------CCcccccCCchhHHHHHhcCcC-----ceeeEEEECCCCcEEEcccchhhhhccccCCCCC
Q 013684 288 RDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 356 (438)
Q Consensus 288 ~~~~~~~~~~~~~------~~~~~p~~~d~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~ 356 (438)
+....+++.++. ..+.||++.|....+.+.||+. ..+++||||++|+|++...... + .
T Consensus 71 -~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~---------~-~ 139 (170)
T d2h01a1 71 -SKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNL---------A-L 139 (170)
T ss_dssp -CHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGG---------S-S
T ss_pred -cHHHHHhHhhhhhhhccccccCCceeEcCccHHHHHhCCccccccceeeeEEEcCCCeEEEEEEecC---------C-C
Confidence 455556666543 2378899999999999999982 4579999999999988642111 1 2
Q ss_pred HHHHHHHHHHHHHH
Q 013684 357 EAKLEFLEKQMEEE 370 (438)
Q Consensus 357 ~~~~~~L~~~i~~~ 370 (438)
.+.+++++++|+.+
T Consensus 140 ~~~~~eil~~l~~l 153 (170)
T d2h01a1 140 GRSVDEILRLIDAL 153 (170)
T ss_dssp GGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 23456666666553
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=8.6e-17 Score=138.82 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=94.9
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|+.+|+|+ +.+.+|+.++|++++||+++|+|| +.|||+|..++|.|++++.++ .++++++||.|
T Consensus 19 ~vG~~APdF~--------L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~----~~~~vv~Is~d- 85 (164)
T d1qxha_ 19 QAGSKAQTFT--------LVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEI----DNTVVLCISAD- 85 (164)
T ss_dssp CTTSBCCCCE--------EECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTS----TTEEEEEEESS-
T ss_pred CCCCCCCCeE--------EECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhh----ccceeeeEEcC-
Confidence 4899999999 899999999999999999999888 789999999999999887765 24999999998
Q ss_pred CHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC---------ccceEEEecCCCCCCCcccccc
Q 013684 117 DLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~---------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+....+++.+.++.......+.+...++.+.||+. ..|+++|||+ +|+|++...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~---~G~I~y~~~ 148 (164)
T d1qxha_ 86 LPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDE---NDNVIFSQL 148 (164)
T ss_dssp CHHHHTTCCSSTTCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECT---TSBEEEEEE
T ss_pred CHHHHHHHHHHhCCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcC---CCEEEEEEE
Confidence 55666777766553222111222227888899873 3478999999 999997755
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.62 E-value=4e-16 Score=134.52 Aligned_cols=117 Identities=14% Similarity=0.142 Sum_probs=95.8
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
.+|..+|+|+| +.+|+ .++|++++||+++|+|| +.|||.|..+++.|++.+++++ +..|++||+|
T Consensus 17 ~vG~~APdF~L~d~~g~-~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~-----------~~~vi~iS~d- 83 (164)
T d1q98a_ 17 QVGEIVENFILVGNDLA-DVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS-----------NTIVLCISAD- 83 (164)
T ss_dssp CTTCBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST-----------TEEEEEEESS-
T ss_pred CCCCCCCCcEEECCCCC-EEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc-----------cceEEeecCC-
Confidence 37999999999 99999 99999999999999999 5588999999999999888875 5799999998
Q ss_pred CHHHHHHHHhcCCCccccc-CCchhHHHHHhcCcC-------c--eeeEEEECCCCcEEEcc
Q 013684 289 DQTSFESYFGTMPWLALPF-GDPTIKELTKYFDVQ-------G--IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~~~~~~~~~~~~~~~~p~-~~d~~~~l~~~~~v~-------~--~P~~~lid~~G~i~~~~ 340 (438)
+.+..++|.+.++...++. ..+....+.+.|++. + .|++||||++|+|++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~ 145 (164)
T d1q98a_ 84 LPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQ 145 (164)
T ss_dssp CHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred cHHHHHHHHHHhCCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEE
Confidence 5566777777766333333 333567788899873 2 37899999999999875
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.61 E-value=2.1e-15 Score=131.03 Aligned_cols=122 Identities=15% Similarity=0.227 Sum_probs=96.0
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCc-cchhhHHHHHHHHHHHhcCCCCEEEEEEecC--
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-- 115 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-- 115 (438)
++.++|+|+ +.+.+|+.+++++++||++||+||++||+ .|...++.|.++++++...+.++.+++||+|
T Consensus 7 ~~~~~p~F~--------l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~ 78 (172)
T d1xzoa1 7 LNYEVEPFT--------FQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPE 78 (172)
T ss_dssp CCEECCCCE--------EECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CCCcCCCeE--------EEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccc
Confidence 567889999 99999999999999999999999999997 7999999999999999887778999999997
Q ss_pred -CCHHHHHHhHhcCC-----cccccCCChH-HHHHHhhhcCc-----------CccceEEEecCCCCCCCcccc
Q 013684 116 -EDLNAFNNYRACMP-----WLAVPYSDLE-TKKALNRKFDI-----------EGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 116 -~~~~~~~~~~~~~~-----~~~~~~~d~~-~~~~l~~~~~v-----------~~~P~~~lvd~~~~~G~v~~~ 171 (438)
++++.+++|...++ |..+...+.. ......+.|++ .+.|.++|||+ +|+++..
T Consensus 79 ~Dtp~~l~~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~---~G~i~~~ 149 (172)
T d1xzoa1 79 NDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGP---DGKVLKD 149 (172)
T ss_dssp TCCHHHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECT---TSEEEEE
T ss_pred cchHHHHHHHHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcC---CCeEEEE
Confidence 46777888887654 4433332222 11222333433 24578999999 9998854
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.59 E-value=1.6e-15 Score=121.88 Aligned_cols=76 Identities=28% Similarity=0.561 Sum_probs=66.2
Q ss_pred ccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 013684 231 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 310 (438)
Q Consensus 231 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 310 (438)
+++..||+++|+|||+||++|+.+.|.++++++++++. +.++.|.+|..
T Consensus 20 l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~----------~~~~~i~~d~~--------------------- 68 (111)
T d1xwaa_ 20 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN----------VVVLKVDVDEC--------------------- 68 (111)
T ss_dssp HHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------EEEEEEETTTC---------------------
T ss_pred HHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccc----------eEEEEEEeecC---------------------
Confidence 44457899999999999999999999999999998754 77888888765
Q ss_pred hhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 311 TIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 311 ~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
..+++.|+|.++||++++ ++|+.+.+.
T Consensus 69 --~~l~~~~~V~~~Pt~~~~-~~G~~v~~~ 95 (111)
T d1xwaa_ 69 --EDIAMEYNISSMPTFVFL-KNGVKVEEF 95 (111)
T ss_dssp --HHHHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred --cchhhcCCCccccEEEEE-ECCEEEEEE
Confidence 568899999999999999 899998873
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=99.58 E-value=7.9e-16 Score=133.39 Aligned_cols=120 Identities=18% Similarity=0.274 Sum_probs=93.4
Q ss_pred HhhccchhHHHHHhhcccccCCCC-----CEEeccccCCC-EEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEE
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIG-----EEVKVSDLEGK-VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVV 110 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g-----~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv 110 (438)
+||.+||+|+ +++.+| +.++|+++.|| +|+|+|| +.|||.|..+++.+++.++++++.| ++|+
T Consensus 2 lVG~~APdF~--------l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~Vv 71 (170)
T d1zofa1 2 VVTKLAPDFK--------APAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVI 71 (170)
T ss_dssp CTTSBCCCCE--------EEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEE
T ss_pred CCCCcCCCcC--------cccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCC--eeEe
Confidence 5899999999 887777 47999999986 8999999 9999999999999999999999987 9999
Q ss_pred EEecCCCH--HHHHHhHhcCC-cccccC---CChHHHHHHhhhcCcC-----ccceEEEecCCCCCCCccccc
Q 013684 111 FVSSDEDL--NAFNNYRACMP-WLAVPY---SDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 111 ~vs~D~~~--~~~~~~~~~~~-~~~~~~---~d~~~~~~l~~~~~v~-----~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+||.|... ..|.+..+... ...++| .|.+ ..+.+.||+. ..|+++|||+ +|+|.+..
T Consensus 72 gis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~--~~v~~~ygv~~~~~~~~r~tfvID~---~G~I~~~~ 139 (170)
T d1zofa1 72 GVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADIT--KSISRDYDVLFEEAIALRGAFLIDK---NMKVRHAV 139 (170)
T ss_dssp EEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTT--SHHHHHTTCEETTTEECEEEEEEET---TTEEEEEE
T ss_pred cccccchhhHHHHHhhhhhcccccCcccccccccc--cHHHHHcCCCccccceeEEEEEEcC---CCeEEEEE
Confidence 99998532 22333332111 111222 2333 7899999984 6789999999 99997654
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.58 E-value=1.8e-15 Score=135.49 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=97.7
Q ss_pred hhcCCCCCcc-CCCCCceeecccc-CCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
+|+.+|+|++ +.++..+++++++ +||+++|+|| +.|||.|..++..+++.+++|.+. +++|++||+|.
T Consensus 4 iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~---------~~~vigiS~Ds 74 (219)
T d1xcca_ 4 LGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL---------NCKLIGFSCNS 74 (219)
T ss_dssp TTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT---------TEEEEEEESSC
T ss_pred CCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhccc---------ceEEEeecCcc
Confidence 7999999999 5543216899886 7899999999 789999999999999999999976 89999999994
Q ss_pred CHHHHHHHHhc------CCCcccccCCchhHHHHHhcCcC------------ceeeEEEECCCCcEEEcc
Q 013684 289 DQTSFESYFGT------MPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~~~~~~~~~~------~~~~~~p~~~d~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~~ 340 (438)
....++|.+. ..-+.||+..|.+.++++.||+- ...++||||++|+|++..
T Consensus 75 -~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~ 143 (219)
T d1xcca_ 75 -KESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATV 143 (219)
T ss_dssp -HHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEE
T ss_pred -HhHHhHHhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEE
Confidence 3444444432 23488999999999999999982 235999999999998763
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=5.8e-15 Score=128.87 Aligned_cols=116 Identities=10% Similarity=0.076 Sum_probs=86.8
Q ss_pred CCCCcc-CCC-CCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-----
Q 013684 216 DRGYLL-GHP-PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR----- 288 (438)
Q Consensus 216 ~~~f~l-~~~-g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~----- 288 (438)
.-||++ +++ |+ .++|++++||++||.|||+||++|.+..+.|++|+++|+++ +++|+++.++.
T Consensus 3 iydf~~~~l~~g~-~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~---------g~~Il~fP~nqF~~qE 72 (184)
T d2f8aa1 3 VYAFSARPLAGGE-PVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR---------GLVVLGFPCNQFGHQE 72 (184)
T ss_dssp GGGCEECBTTCSS-CEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCCSTTTT
T ss_pred eeeeEEEECCCCC-EecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhccc---------ceeEEEeecccccccc
Confidence 357888 876 67 89999999999999999999999999999999999999987 89999999863
Q ss_pred --CHHHHHHHHhcC----C-CcccccCC------chhHHHHH----h--------cCcCcee-----------------e
Q 013684 289 --DQTSFESYFGTM----P-WLALPFGD------PTIKELTK----Y--------FDVQGIP-----------------C 326 (438)
Q Consensus 289 --~~~~~~~~~~~~----~-~~~~p~~~------d~~~~l~~----~--------~~v~~~P-----------------~ 326 (438)
+.++++++++.. . ...||+.. +....+.+ . .++.+.| +
T Consensus 73 ~~~~~ei~~f~~~~~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFt 152 (184)
T d2f8aa1 73 NAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFE 152 (184)
T ss_dssp CSCHHHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTC
T ss_pred ccchhhhhhhhheeccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEE
Confidence 456788887531 1 13455421 22222322 2 1233444 7
Q ss_pred EEEECCCCcEEEccc
Q 013684 327 LVIIGPEGKTVTKQG 341 (438)
Q Consensus 327 ~~lid~~G~i~~~~~ 341 (438)
.||||++|+++.+.+
T Consensus 153 KFLIdr~G~vv~rf~ 167 (184)
T d2f8aa1 153 KFLVGPDGVPLRRYS 167 (184)
T ss_dssp EEEECTTSCEEEEEC
T ss_pred EEEECCCCCEEEEEC
Confidence 899999999998754
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.57 E-value=1.3e-15 Score=134.46 Aligned_cols=122 Identities=15% Similarity=0.196 Sum_probs=94.5
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
.|.+||+|+ .+. ++.|.+|+.++|++++||+|+|+|| ++||+.|..+++.|++++++|+..| ++|++||.|..
T Consensus 5 ~~~PAPdFt---l~a-~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g--~~VlgIS~Ds~ 78 (194)
T d1uula_ 5 DLHPAPDFN---ETA-LMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLACSMDSE 78 (194)
T ss_dssp TTSBCCCCE---EEE-ECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCH
T ss_pred cCCCCCCCc---ccc-cccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCc--eEEEEEecCch
Confidence 577899998 111 1347889999999999999999999 9999999999999999999999876 99999999942
Q ss_pred HHHHHHhHhcC----CcccccC---CChHHHHHHhhhcCc------CccceEEEecCCCCCCCccccc
Q 013684 118 LNAFNNYRACM----PWLAVPY---SDLETKKALNRKFDI------EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 118 ~~~~~~~~~~~----~~~~~~~---~d~~~~~~l~~~~~v------~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
...+.+.+.+ +...++| .|.+ .++++.||+ ..+|++||||+ +|.|.+..
T Consensus 79 -~s~~~~~~~~~~~~~~~~l~fpllsD~~--~~v~~~ygv~~~~~~~~~R~tfvID~---~G~I~~~~ 140 (194)
T d1uula_ 79 -YSHLAWTSIERKRGGLGQMNIPILADKT--KCIMKSYGVLKEEDGVAYRGLFIIDP---KQNLRQIT 140 (194)
T ss_dssp -HHHHHHHHSCGGGTCCCSCSSCEEECTT--CHHHHHHTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred -hhhhhhhhhhhhhccccCCCcceeeCCc--chHHHHcCCeeccCCceEEEEEEECC---CCeEEEEE
Confidence 3334443322 1112222 2444 789999998 35789999999 99998764
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.56 E-value=2.8e-15 Score=128.25 Aligned_cols=115 Identities=20% Similarity=0.266 Sum_probs=91.0
Q ss_pred cchhHHHHHhhccccc---CCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 42 LSQWYVQQLRRRMTST---KEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 42 ~~p~f~~~~~~~~~~~---~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
.||+|+ ++ +.+|+.++|++++||+|+|+|| +.|||+|..+++.++++++++.+.| .+|++||.|..
T Consensus 2 ~AP~F~--------l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~--~~vigIS~d~~ 71 (158)
T d1zyea1 2 HAPYFK--------GTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVDSH 71 (158)
T ss_dssp BCCCCE--------EEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESSCH
T ss_pred CCCCCc--------cceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCC--ceEEeccCcCH
Confidence 578887 54 5677899999999999999999 9999999999999999999999987 99999999953
Q ss_pred HHHHHHhHhcC-------CcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCccccc
Q 013684 118 LNAFNNYRACM-------PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 118 ~~~~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
...+.+.... +.......|.. ..+.+.|++. ..|+++|||+ +|+|.+..
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~f~llsD~~--~~~~~~ygv~~~~~g~~~R~tfvID~---~G~I~~~~ 133 (158)
T d1zyea1 72 -FSHLAWINTPRKNGGLGHMNIALLSDLT--KQISRDYGVLLEGPGLALRGLFIIDP---NGVIKHLS 133 (158)
T ss_dssp -HHHHHHHTSCGGGTCCCSCSSEEEECTT--SHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred -HHHHHHHhhhHhhccccccccccccccc--cHHHHHHHhccccCCccccEEEEECC---CCEEEEEE
Confidence 4445555432 22222223444 6789999885 4678999999 99998654
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.55 E-value=9.7e-15 Score=116.43 Aligned_cols=71 Identities=24% Similarity=0.482 Sum_probs=63.2
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+|+|+|+|||+||++|+.+.|.+.++.+++.++ +.++.|++|.. ..
T Consensus 18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~----------~~~~~vd~d~~-----------------------~~ 64 (107)
T d1dbya_ 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK----------LKCVKLNTDES-----------------------PN 64 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------CEEEEEETTTC-----------------------HH
T ss_pred CCCcEEEEEECCCCCCccccChHHHHHHHhhccc----------ceEEEEecccc-----------------------hh
Confidence 3689999999999999999999999998887654 78899988865 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++++|+|+++||++++ ++|+.+.+
T Consensus 65 l~~~~~V~~~Pt~~~~-~~G~~v~~ 88 (107)
T d1dbya_ 65 VASEYGIRSIPTIMVF-KGGKKCET 88 (107)
T ss_dssp HHHHHTCCSSCEEEEE-SSSSEEEE
T ss_pred HHHHhcccceEEEEEE-ECCeEEEE
Confidence 8999999999999999 68999887
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.55 E-value=6e-15 Score=117.22 Aligned_cols=71 Identities=28% Similarity=0.499 Sum_probs=63.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+|+++|+|||+||++|+.+.|.+.+++++++++ +.++.|++|.. ..
T Consensus 16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~----------~~~~~vd~~~~-----------------------~~ 62 (105)
T d1nw2a_ 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK----------VTVAKLNVDEN-----------------------PE 62 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------CEEEEEETTTC-----------------------HH
T ss_pred CCCcEEEEEECCCCCCcccccchhhhhhhhcCCc----------eEEEEEECCCC-----------------------cc
Confidence 3589999999999999999999999999998754 88999988866 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++||++++ ++|+.+.+
T Consensus 63 ~~~~~~V~~~Pt~~~~-~~G~~~~~ 86 (105)
T d1nw2a_ 63 TTSQFGIMSIPTLILF-KGGEPVKQ 86 (105)
T ss_dssp HHHHTTCCBSSEEEEE-ETTEEEEE
T ss_pred cHHHCCcceeeEEEEE-ECCEEEEE
Confidence 8999999999999999 78998877
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.55 E-value=1.2e-15 Score=130.34 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=95.7
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEecccc--CCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDL--EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~--~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
.+|+++|+|+ +.+.+|+.++|+++ +|++|+++|| ++|||+|..+++.|++.+++|++. ..+++||.
T Consensus 6 ~vG~~aP~f~--------L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~---~~~~~is~ 74 (156)
T d2a4va1 6 EIGDPIPDLS--------LLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY---AAVFGLSA 74 (156)
T ss_dssp CTTCBCCSCE--------EECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT---CEEEEEES
T ss_pred CCCCCCCCeE--------EECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc---cceeeecc
Confidence 4899999999 99999999999998 5678888888 899999999999999999999754 66889998
Q ss_pred CCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccce-----EEEecCCCCCCCcccccc
Q 013684 115 DEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPC-----LVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 115 D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~-----~~lvd~~~~~G~v~~~~~ 173 (438)
| +.+..+++.++++..+....|.+ .++.+.||+...|. .++|+. ||+++.+..
T Consensus 75 d-~~~~~~~f~~~~~l~f~~L~D~~--~~v~~~ygv~~~~~~~~~r~~~i~~---dg~i~~~~~ 132 (156)
T d2a4va1 75 D-SVTSQKKFQSKQNLPYHLLSDPK--REFIGLLGAKKTPLSGSIRSHFIFV---DGKLKFKRV 132 (156)
T ss_dssp C-CHHHHHHHHHHHTCSSEEEECTT--CHHHHHHTCBSSSSSCBCCEEEEEE---TTEEEEEEE
T ss_pred c-hhhhHHhhhcccCccceeccchH--HHHHHHcCCCccccCCeeEEEEEEE---CCeEEEEEE
Confidence 7 67778888887664433333554 78999999866553 455556 888876643
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=1.7e-14 Score=115.12 Aligned_cols=70 Identities=23% Similarity=0.515 Sum_probs=61.9
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++|+|+|||+||++|+.+.|.+.++++++.. ++.++.+++|.+ ..+
T Consensus 20 ~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~----------~~~~~~vd~d~~-----------------------~~l 66 (108)
T d2trxa_ 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG----------KLTVAKLNIDQN-----------------------PGT 66 (108)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TEEEEEEETTTC-----------------------TTH
T ss_pred CCcEEEEEECCCCCCccccCcHHHHHHHHhhc----------ceeeeeccccch-----------------------hhH
Confidence 68999999999999999999999999887764 488888888755 568
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++|+|.++||++++ ++|+.+.+
T Consensus 67 ~~~~~v~~~PT~~~~-~~G~~v~~ 89 (108)
T d2trxa_ 67 APKYGIRGIPTLLLF-KNGEVAAT 89 (108)
T ss_dssp HHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHhCCCcEEEEEEE-ECCEEEEE
Confidence 999999999999999 79998877
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.4e-14 Score=121.09 Aligned_cols=117 Identities=18% Similarity=0.379 Sum_probs=88.9
Q ss_pred CCcc-CCCCCceeeccccCCCEEEEEEecCCCh-hhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---CHHH
Q 013684 218 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQTS 292 (438)
Q Consensus 218 ~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~~~~ 292 (438)
||+| |.+|+ ++++++++||++||+||++||| .|....+.+.++++++... .....+.++.++.+. ....
T Consensus 2 dF~L~d~~G~-~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 75 (160)
T d1wp0a1 2 PFSLTTHTGE-RKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSI-----TTLPDLTPLFISIDPERDTKEA 75 (160)
T ss_dssp CCEEEETTSC-EEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHC-----TTSCCEEEEEEESCTTTCCHHH
T ss_pred CeEEEcCCCC-EEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcc-----cccccccccccccCCCcccHHH
Confidence 6999 99999 9999999999999999999997 6999999999999998764 112456777777753 3445
Q ss_pred HHHHHhcCC--CcccccCCchhHHHHHhcCcCce---------------eeEEEECCCCcEEEcc
Q 013684 293 FESYFGTMP--WLALPFGDPTIKELTKYFDVQGI---------------PCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 293 ~~~~~~~~~--~~~~p~~~d~~~~l~~~~~v~~~---------------P~~~lid~~G~i~~~~ 340 (438)
...+..... |..++........+...|++... +++||||++|+++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~ 140 (160)
T d1wp0a1 76 IANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYF 140 (160)
T ss_dssp HHHHHHTTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEE
T ss_pred HHHHHhhcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEE
Confidence 555555443 44444444455667788876433 5789999999999874
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.53 E-value=1.6e-14 Score=116.45 Aligned_cols=71 Identities=27% Similarity=0.509 Sum_probs=61.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+|||+||++|+.+.|.+.++.+.++ ++.++.|+.|.. ..
T Consensus 27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~-----------~~~~~~vd~~~~-----------------------~~ 72 (114)
T d1xfla_ 27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-----------NVLFLKVDTDEL-----------------------KS 72 (114)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-----------SEEEEEEETTTS-----------------------HH
T ss_pred cCCeEEEEEEcCCCCCccccccchhhhccccc-----------ccceeEEEeeec-----------------------ee
Confidence 46899999999999999999999999988764 467888877755 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
++++|+|+++||++++ ++|+.+.+.
T Consensus 73 l~~~~~V~~~Pt~~~~-~~G~~v~~~ 97 (114)
T d1xfla_ 73 VASDWAIQAMPTFMFL-KEGKILDKV 97 (114)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred eccccceeeeEEEEEE-ECCEEEEEE
Confidence 8999999999999999 899999873
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.52 E-value=1.4e-14 Score=116.55 Aligned_cols=89 Identities=16% Similarity=0.316 Sum_probs=72.5
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+|+++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.. ..
T Consensus 23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~----------v~~~~vd~d~~-----------------------~~ 69 (112)
T d1ep7a_ 23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK----------VIFLKVDVDAV-----------------------AA 69 (112)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------SEEEEEETTTT-----------------------HH
T ss_pred cCCeEEEEEEcCCcCCCcccchhhhhhhhcccce----------EEEEEeecccc-----------------------cc
Confidence 4789999999999999999999999999988753 78888888755 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK 372 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~ 372 (438)
+++.|+|+++||++++ ++|+.+.+. .|. + .++|.+.|++.++
T Consensus 70 l~~~~~v~~~Pt~~~~-~~G~~v~~~-------~G~-----~---~~~l~~~i~k~~a 111 (112)
T d1ep7a_ 70 VAEAAGITAMPTFHVY-KDGVKADDL-------VGA-----S---QDKLKALVAKHAA 111 (112)
T ss_dssp HHHHHTCCBSSEEEEE-ETTEEEEEE-------ESC-----C---HHHHHHHHHHHHC
T ss_pred ccccccccCCCEEEEE-ECCEEEEEE-------eCc-----C---HHHHHHHHHHHhC
Confidence 8999999999999999 799998873 342 2 2566666766543
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.52 E-value=2e-14 Score=113.84 Aligned_cols=70 Identities=20% Similarity=0.450 Sum_probs=62.6
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+|||+||++|+.+.|.+.++.+++.++ +.++.|++|.+ ..+
T Consensus 17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~----------~~~~~v~~d~~-----------------------~~l 63 (104)
T d1fb6a_ 17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK----------IAVYKLNTDEA-----------------------PGI 63 (104)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------CEEEEEETTTC-----------------------HHH
T ss_pred CCcEEEEEEcCccCCccccCchhHHHHHhhcCc----------cceeEEecccc-----------------------hhh
Confidence 578999999999999999999999999998754 67888888865 678
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++|+|+++||++++ ++|+.+.+
T Consensus 64 ~~~~~V~~~Pt~~~~-~~G~~v~~ 86 (104)
T d1fb6a_ 64 ATQYNIRSIPTVLFF-KNGERKES 86 (104)
T ss_dssp HHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred hhhcceeeeeEEEEE-EcCeEEEE
Confidence 999999999999999 79999877
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.52 E-value=4.6e-15 Score=127.76 Aligned_cols=120 Identities=12% Similarity=0.078 Sum_probs=94.0
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|+.+|+|+ +.+.+|+.++|++++||+++|+|| +.|||.|..+++.|++.+++++ +..+++||.|
T Consensus 17 ~vG~~APdF~--------L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~----~~~vi~iS~d- 83 (164)
T d1q98a_ 17 QVGEIVENFI--------LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS----NTIVLCISAD- 83 (164)
T ss_dssp CTTCBCCCCE--------EECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST----TEEEEEEESS-
T ss_pred CCCCCCCCcE--------EECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc----cceEEeecCC-
Confidence 4899999999 899999999999999999999999 6688999999999999999984 3899999998
Q ss_pred CHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC---------ccceEEEecCCCCCCCcccccc
Q 013684 117 DLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~---------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+..+++.+..+.......+......+.+.|++. ..|+++|||+ +|+|++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~---~G~I~y~~~ 146 (164)
T d1q98a_ 84 LPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDE---QNNVLHSQL 146 (164)
T ss_dssp CHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECT---TSBEEEEEE
T ss_pred cHHHHHHHHHHhCCccccccccccchhHHHhhceecccCccccCcccEEEEECC---CCEEEEEEE
Confidence 44566777766654322211211115667777763 2488999999 999987654
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.3e-14 Score=115.21 Aligned_cols=71 Identities=25% Similarity=0.442 Sum_probs=61.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+|+++|+|||+||++|+.+.|.+.++.+++. ++.++.|++|.. ..
T Consensus 19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~-----------~~~~~~vd~d~~-----------------------~~ 64 (105)
T d2ifqa1 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-----------NVIFLEVDVDDC-----------------------QD 64 (105)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HH
T ss_pred CCCEEEEEEEcCCccchhhhhhhhhhhccccc-----------cceeeecccccC-----------------------Hh
Confidence 45889999999999999999999999988775 346777777755 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.|+|+++||++++ ++|+.+.+.
T Consensus 65 ~~~~~~V~~~Pt~~~~-~~G~~v~~~ 89 (105)
T d2ifqa1 65 VASECEVKCMPTFQFF-KKGQKVGEF 89 (105)
T ss_dssp HHHHTTCCBSSEEEEE-ETTEEEEEE
T ss_pred HHHHcCceEEEEEEEE-ECCEEEEEE
Confidence 8899999999999999 899999873
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.52 E-value=5.9e-15 Score=127.37 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=85.3
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|+++|+|+ +.+.+|+.++|++++||++||+|| +.|||.|..+++.|++.+ ++.| ++|++|+.|.
T Consensus 18 ~iG~~aP~F~--------L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~---~~~g--~~vv~Is~d~ 84 (166)
T d1xvqa_ 18 AVGSPAPAFT--------LTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERA---AASG--ATVLCVSKDL 84 (166)
T ss_dssp CTTSBCCCCE--------EECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHH---HHTT--CEEEEEESSC
T ss_pred CCcCCCCCeE--------EECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhc---cccc--ccccccccch
Confidence 4899999999 999999999999999999999999 668899999988876554 4444 8999999884
Q ss_pred CHHHHHHhHhcCCcccccC-CChHHHHHHhhhcCcC---------ccceEEEecCCCCCCCcccccc
Q 013684 117 DLNAFNNYRACMPWLAVPY-SDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~-~d~~~~~~l~~~~~v~---------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
..+..++.+.+....... .+.. ..+.+.|++. ..|++||||+ +|+|++...
T Consensus 85 -~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~g~~~ra~fvID~---~G~I~y~~~ 145 (166)
T d1xvqa_ 85 -PFAQKRFCGAEGTENVMPASAFR--DSFGEDYGVTIADGPMAGLLARAIVVIGA---DGNVAYTEL 145 (166)
T ss_dssp -HHHHTTCC------CEEEEECTT--SSHHHHTTCBBCSSTTTTSBCSEEEEECT---TSBEEEEEE
T ss_pred -HHHHHHHHHHhCCcccccccchh--HHHHHHhCeeeccCcccCceeeEEEEEeC---CCEEEEEEE
Confidence 455666666554332221 1221 4556666653 2478999999 999997654
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.51 E-value=2.9e-14 Score=113.74 Aligned_cols=70 Identities=24% Similarity=0.511 Sum_probs=62.4
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|+.+.|.+.++.+++.+. +.++.|++|.+ ..+
T Consensus 20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~----------~~~~~vd~d~~-----------------------~~l 66 (108)
T d1thxa_ 20 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDR----------LKVVKLEIDPN-----------------------PTT 66 (108)
T ss_dssp SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT----------CEEEEEESTTC-----------------------HHH
T ss_pred CCcEEEEEECCCCCCccccchHHHHHHHhcCCc----------ceeceeccccc-----------------------HHH
Confidence 478999999999999999999999999888754 78899988865 678
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++|+|+++||++++ ++|+.+.+
T Consensus 67 ~~~~~I~~~Pt~~~~-~~g~~v~~ 89 (108)
T d1thxa_ 67 VKKYKVEGVPALRLV-KGEQILDS 89 (108)
T ss_dssp HHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHhcccCCCEEEEE-ECCEEEEE
Confidence 999999999999999 58988876
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=99.51 E-value=3.7e-15 Score=130.43 Aligned_cols=119 Identities=24% Similarity=0.293 Sum_probs=93.4
Q ss_pred HhhccchhHHHHHhhcccccC-CCC--CEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 38 LIMSLSQWYVQQLRRRMTSTK-EIG--EEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~-~~g--~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
+||.++|+|+ +.. .+| ++++|++++||+++|+|| +.|||.|..+++.|++.+++|++.| +++++||
T Consensus 2 lIg~~aP~F~--------~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~--~~v~gIS 71 (186)
T d1n8ja_ 2 LINTKIKPFK--------NQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVS 71 (186)
T ss_dssp CTTCBCCCCE--------EEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEE
T ss_pred CCCCcCCCCE--------eeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhccccc--EEEEecc
Confidence 6899999999 543 244 578999999999999999 8999999999999999999999976 9999999
Q ss_pred cCCCHHHHHHhHhcCC---ccccc-CCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCccccc
Q 013684 114 SDEDLNAFNNYRACMP---WLAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 114 ~D~~~~~~~~~~~~~~---~~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.|. ....+++.++.. ...+| .+|.+ .++++.||+. ..|+++|||+ +|.|.+..
T Consensus 72 ~Ds-~~sh~~f~~~~~~~~~~~fpllsD~~--~~v~~~yGv~~~~~g~~~r~tfiID~---~G~Ir~~~ 134 (186)
T d1n8ja_ 72 TDT-HFTHKAWHSSSETIAKIKYAMIGDPT--GALTRNFDNMREDEGLADRATFVVDP---QGIIQAIE 134 (186)
T ss_dssp SSC-HHHHHHHHHHCTTGGGCCSEEEECTT--SHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred ccC-HHHHHHHhccccccccccccccccHH--HHHHHHhCCCcccCCcceeeEEEECc---hheEEEEe
Confidence 984 444455554332 12222 22444 7999999984 4688999999 99987654
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=99.51 E-value=6.1e-15 Score=133.53 Aligned_cols=119 Identities=17% Similarity=0.260 Sum_probs=94.3
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEecccc---CCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDL---EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~---~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
+||+.+|+|+ +.+.+|+ +.+++. +||+++|+|| ++|||.|..+++.|++++++|+++| ++|++||
T Consensus 2 lIGd~aPdF~--------l~t~~G~-i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g--~~vigiS 70 (237)
T d2zcta1 2 LIGERFPEME--------VTTDHGV-IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLS 70 (237)
T ss_dssp CTTSBCCCEE--------EEETTEE-EEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEE
T ss_pred CCCCCCCCeE--------EEcCCCC-EEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCC--cceeecc
Confidence 4899999999 8999995 777664 7999999999 9999999999999999999999987 9999999
Q ss_pred cCC--CHHHHHHhHhcC--Cccccc-CCChHHHHHHhhhcCc-------CccceEEEecCCCCCCCccccc
Q 013684 114 SDE--DLNAFNNYRACM--PWLAVP-YSDLETKKALNRKFDI-------EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 114 ~D~--~~~~~~~~~~~~--~~~~~~-~~d~~~~~~l~~~~~v-------~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+|. +...|.+..... ....+| ..|.+ .++++.||+ ...|++||||+ +|+|....
T Consensus 71 ~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~--~~vak~yGv~~~~~~~~~~RatFIIDp---dG~Ir~~~ 136 (237)
T d2zcta1 71 VDSVFSHIKWKEWIERHIGVRIPFPIIADPQ--GTVARRLGLLHAESATHTVRGVFIVDA---RGVIRTML 136 (237)
T ss_dssp SSCHHHHHHHHHHHHHHHCCCCCSCEEECGG--GHHHHHTTCC----CCTTCCEEEEECT---TSBEEEEE
T ss_pred CCcHHHHHHHhhhhhhhcccccccccccCcc--hHHHHHcCCccccccccceeeeEEECC---CCEEEEEE
Confidence 995 334555444321 112222 22444 799999998 46899999999 99987653
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.9e-14 Score=114.59 Aligned_cols=87 Identities=14% Similarity=0.213 Sum_probs=70.5
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+|+++|+|||+||++|+.+.|.+.++++++. ++.++.|++|.. ..
T Consensus 20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~-----------~~~f~~vd~d~~-----------------------~~ 65 (107)
T d1gh2a_ 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-----------QAVFLEVDVHQC-----------------------QG 65 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTS-----------------------HH
T ss_pred CCCEEEEEEECCCCCCccccchhhhccccccc-----------cccccccccccc-----------------------hh
Confidence 46889999999999999999999999998775 467888887755 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHh
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA 371 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~ 371 (438)
+++.|+|.++||++++ ++|+.+.+. .|.+ .++|.+.|++.+
T Consensus 66 l~~~~~v~~~Pt~~~~-~~G~~v~~~-------~G~~--------~~~l~~~i~k~l 106 (107)
T d1gh2a_ 66 TAATNNISATPTFQFF-RNKVRIDQY-------QGAD--------AVGLEEKIKQHL 106 (107)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE-------ESSC--------HHHHHHHHHHHH
T ss_pred hhhhcCceeceEEEEE-ECCEEEEEE-------eCCC--------HHHHHHHHHHhh
Confidence 8899999999999999 899999873 3422 255666666654
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.50 E-value=2.6e-14 Score=115.02 Aligned_cols=71 Identities=21% Similarity=0.399 Sum_probs=62.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+|||+||++|+++.|.|.++++++. ++.++.|++|.. .+
T Consensus 25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----------~v~~~~vd~d~~-----------------------~~ 70 (113)
T d1r26a_ 25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-----------TVKFAKVDADNN-----------------------SE 70 (113)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HH
T ss_pred CCCeEEEEEECCCCccchhhceeccccccccc-----------cccccccccccc-----------------------hh
Confidence 45789999999999999999999999998775 578999988765 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.|||.++||++++ ++|+.+.+.
T Consensus 71 l~~~~~V~~~Pt~~~~-~~G~~v~~~ 95 (113)
T d1r26a_ 71 IVSKCRVLQLPTFIIA-RSGKMLGHV 95 (113)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred hHHHccccCCCEEEEE-ECCEEEEEE
Confidence 8999999999999999 899999873
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.50 E-value=2.7e-14 Score=114.95 Aligned_cols=71 Identities=25% Similarity=0.568 Sum_probs=62.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+|+|+|+||++||++|+.+.|.|.++.+++. ++.++.|++|.. ..
T Consensus 25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-----------~~~~~~vd~d~~-----------------------~~ 70 (113)
T d1ti3a_ 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-----------NVTFLKVDVDEL-----------------------KA 70 (113)
T ss_dssp SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-----------SEEEEEEETTTC-----------------------HH
T ss_pred CCCEEEEEEEcCccccchhhhhhhhhhhccCC-----------CceEEeeeeecc-----------------------cc
Confidence 46899999999999999999999999887764 467888888755 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
++++|+|+++||++++ ++|+.+.+.
T Consensus 71 l~~~~~I~~~Pt~~~~-k~G~~v~~~ 95 (113)
T d1ti3a_ 71 VAEEWNVEAMPTFIFL-KDGKLVDKT 95 (113)
T ss_dssp HHHHHHCSSTTEEEEE-ETTEEEEEE
T ss_pred ccccCeecccceEEEE-ECCEEEEEE
Confidence 8999999999999999 799999874
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.4e-14 Score=127.91 Aligned_cols=120 Identities=22% Similarity=0.251 Sum_probs=95.5
Q ss_pred HHhhccchhHHHHHhhccccc---CCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEE
Q 013684 37 FLIMSLSQWYVQQLRRRMTST---KEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 112 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~---~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~v 112 (438)
+.+|+++|+|+ +. +.+|+.++|++++||+++|+|| +.||+.|..++..|++++++|++.| ++|++|
T Consensus 5 ~~VG~~AP~F~--------l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~vigI 74 (197)
T d1qmva_ 5 ARIGKPAPDFK--------ATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLG--CEVLGV 74 (197)
T ss_dssp BCTTSBCCCCE--------EEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEEE
T ss_pred CcCCCcCCCCC--------CcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCC--cEEEEE
Confidence 35899999998 43 6788899999999999999999 9999999999999999999999986 999999
Q ss_pred ecCCCHHHHHHhHhcC----Cc--cccc-CCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCccccc
Q 013684 113 SSDEDLNAFNNYRACM----PW--LAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 113 s~D~~~~~~~~~~~~~----~~--~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|.|.. ...+++.... +. ..+| ..|.. +++++.||+. .+|++|+||+ +|.|....
T Consensus 75 S~D~~-~~~~~~~~~~~~~~~~~~~~fpll~D~~--~~va~~ygv~~~~~g~~~R~tfiID~---~g~Ir~~~ 141 (197)
T d1qmva_ 75 SVDSQ-FTHLAWINTPRKEGGLGPLNIPLLADVT--RRLSEDYGVLKTDEGIAYRGLFIIDG---KGVLRQIT 141 (197)
T ss_dssp ESSCH-HHHHHHHTSCGGGTCCCSCSSCEEECTT--CHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred ecCCH-HHHHhhhcchhhhcCcCCCccceEeccc--hHHHHHhCCCcccCCeeeEEEEEECC---CCcEEEEE
Confidence 99943 3344554432 11 1122 22443 7899999984 5789999999 99987653
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.48 E-value=1.1e-14 Score=125.25 Aligned_cols=120 Identities=13% Similarity=0.030 Sum_probs=89.0
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|+.+|+|+ +.+.+|+.++|++++||+++|.|| +.|||+|..+++.|.+.+.+++ ++.+++|+.|.
T Consensus 17 ~vG~~aPdF~--------L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~----~~~vv~Is~d~ 84 (163)
T d1psqa_ 17 QVGDKALDFS--------LTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD----NTVVLTVSMDL 84 (163)
T ss_dssp CTTSBCCCCE--------EECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT----TEEEEEEESSC
T ss_pred CCCCCCCCeE--------EECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc----ccceEEEEecc
Confidence 4899999999 999999999999999999999998 7899999999999988777763 48899999884
Q ss_pred CHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCc------cceEEEecCCCCCCCcccccc
Q 013684 117 DLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~------~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.....++....+.......+.+....+.+.||+.. .++++|||+ +|+|++...
T Consensus 85 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~---~G~I~y~~~ 143 (163)
T d1psqa_ 85 -PFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDT---DNTIRYVEY 143 (163)
T ss_dssp -HHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECT---TCBEEEEEE
T ss_pred -HHHHHHHHHHcCCcceeeeccccchhHHHhheeecccccceeEEEEEECC---CCEEEEEEE
Confidence 33344444433221111111111156778888742 246899999 999987654
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.47 E-value=5e-14 Score=113.13 Aligned_cols=70 Identities=24% Similarity=0.470 Sum_probs=61.4
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+|+++|+||++||++|+.+.|.+.++.+++. ++.++.|++|.+ ..++
T Consensus 25 ~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~-----------~v~~~~vd~~~~----------------------~~~l 71 (112)
T d1f9ma_ 25 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-----------DVIFLKLDCNQE----------------------NKTL 71 (112)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSST----------------------THHH
T ss_pred CCEEEEEEEcCCCcchHHHHHHHhhhccccc-----------cceeeccccccc----------------------chhh
Confidence 4799999999999999999999999998875 457788877643 3678
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++.|+|+++||++++ ++|+++.+
T Consensus 72 ~~~~~V~~~Pt~~~~-k~G~~v~~ 94 (112)
T d1f9ma_ 72 AKELGIRVVPTFKIL-KENSVVGE 94 (112)
T ss_dssp HHHHCCSSSSEEEEE-ETTEEEEE
T ss_pred HhheeeccCCEEEEE-ECCEEEEE
Confidence 999999999999999 89999987
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.46 E-value=2.3e-13 Score=108.18 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=61.0
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
....+++++++||++|||+|+.+.|.+.+++...... ....+.++.|+.+..
T Consensus 11 ~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~------~~~~v~~~~id~~~~---------------------- 62 (107)
T d1a8la2 11 RNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKA------GKGKILGDMVEAIEY---------------------- 62 (107)
T ss_dssp TTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHT------TCCCEEEEEEEGGGC----------------------
T ss_pred HhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhc------cCCcEEEEEeccccc----------------------
Confidence 3445567788899999999999999999998765532 034567777776643
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+++++|+|.++||++++ ++|+.+.+
T Consensus 63 -~~l~~~~~V~~vPTi~i~-~~G~~~~~ 88 (107)
T d1a8la2 63 -PEWADQYNVMAVPKIVIQ-VNGEDRVE 88 (107)
T ss_dssp -HHHHHHTTCCSSCEEEEE-ETTEEEEE
T ss_pred -cccccccccccceEEEEE-eCCeEEEE
Confidence 678999999999998766 89998877
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=4.2e-14 Score=114.44 Aligned_cols=83 Identities=23% Similarity=0.373 Sum_probs=62.1
Q ss_pred eccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC
Q 013684 230 PVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 309 (438)
Q Consensus 230 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~ 309 (438)
.+++.+||+++|+|||+||++|+.+.|.+.+..+..+.. .++.++.+.++.+.
T Consensus 16 ~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~------------------- 68 (117)
T d2fwha1 16 ALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKAL--------ADTVLLQANVTAND------------------- 68 (117)
T ss_dssp HHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHT--------TTSEEEEEECTTCC-------------------
T ss_pred HHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhc--------cceEEEecccccch-------------------
Confidence 345567999999999999999999999885443333221 24566666665432
Q ss_pred chhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 310 PTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 310 d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+...++++.|+|.++||++++|++|+++..
T Consensus 69 ~~~~~l~~~~~v~~~Pt~~~~~~~G~~~~~ 98 (117)
T d2fwha1 69 AQDVALLKHLNVLGLPTILFFDGQGQEHPQ 98 (117)
T ss_dssp HHHHHHHHHTTCCSSSEEEEECTTSCBCGG
T ss_pred hHHHHHHhhhehhhceEEEEEeCCCcEEec
Confidence 224778999999999999999999998753
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.45 E-value=1.1e-13 Score=109.39 Aligned_cols=71 Identities=21% Similarity=0.403 Sum_probs=61.8
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++.+++. +..++.+++|.. .+
T Consensus 17 ~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~-----------~~~~~~vd~d~~-----------------------~~ 62 (103)
T d1syra_ 17 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-----------KMVFIKVDVDEV-----------------------SE 62 (103)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTT-----------------------HH
T ss_pred CCCcEEEEEeCCcccCcccccccchhhhhccc-----------ceEEEeeccccC-----------------------cc
Confidence 36799999999999999999999999998875 356788887755 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.|+|.++||++++ ++|+.+.+.
T Consensus 63 ~~~~~~V~~~Pt~i~~-k~G~~v~~~ 87 (103)
T d1syra_ 63 VTEKENITSMPTFKVY-KNGSSVDTL 87 (103)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred eeeeeeeecceEEEEE-ECCEEEEEE
Confidence 8999999999999999 799998873
|
| >d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: C1-like domain domain: Pdi-like hypothetical protein At1g60420 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.44 E-value=2.1e-14 Score=108.82 Aligned_cols=80 Identities=35% Similarity=0.694 Sum_probs=73.3
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhccCCCccccccc-ccccccccccCCCCCcccCccCCCCCceeEEcCCCCCCccCccc
Q 013684 349 QENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGH-RHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCV 427 (438)
Q Consensus 349 g~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~c~~C~~~~~~w~~~c~~c~~~~~~~c~ 427 (438)
|+++||+|++...++...+.+.-...|..+.+..| .|.+.+ .....++|+.|++.+.+|.|+|..|+|+||..||
T Consensus 1 ~~~~~~~t~~~~~e~~~~~he~c~~~P~~I~Hp~Hp~H~L~L----~~~~~~~C~~C~~~~~g~~Y~C~~C~f~LH~~CA 76 (89)
T d1v5na_ 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELEL----TRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCA 76 (89)
T ss_dssp CCCCCCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEE----ECCSSCCCTTTSCCCCSCEEECTTTCCCCCHHHH
T ss_pred CCccCCchHHHHHHHHhhhhHHHhcCCCeecCCCCCCCCeEE----ecCCCCEeCCCCCCcCCcEeEeccCCCEecHHHc
Confidence 57789999999999999999999999999999999 599988 4456799999999999999999999999999999
Q ss_pred cccCC
Q 013684 428 RAVDR 432 (438)
Q Consensus 428 ~~~~~ 432 (438)
+.++.
T Consensus 77 ~~P~~ 81 (89)
T d1v5na_ 77 LNEDT 81 (89)
T ss_dssp HCSSC
T ss_pred CCCcc
Confidence 97754
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4e-13 Score=111.44 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=62.8
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+|+|+|.|||+||++|+++.|.|.++++++++. +.++.|++|.. .+
T Consensus 21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~----------v~~~~VDvd~~-----------------------~~ 67 (137)
T d1qgva_ 21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF----------AVIYLVDITEV-----------------------PD 67 (137)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT----------EEEEEEETTTC-----------------------CT
T ss_pred CCCEEEEEEECCCCccchhcChHHHHHHHHhhcc----------ceEEEeecccc-----------------------ch
Confidence 4689999999999999999999999999999754 78888888765 57
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|+++||++++ ++|+.+..
T Consensus 68 la~~~~I~~~PT~~~f-~~g~~i~~ 91 (137)
T d1qgva_ 68 FNKMYELYDPCTVMFF-FRNKHIMI 91 (137)
T ss_dssp TTTSSCSCSSCEEEEE-ETTEEEEE
T ss_pred hhhhcCeeeEEEEEEE-eCCcEEEE
Confidence 8999999999999999 78887754
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=5.7e-14 Score=126.01 Aligned_cols=120 Identities=18% Similarity=0.289 Sum_probs=94.4
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCC-CEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEG-KVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
+||+.+|+|+ +.+.+|+ ++|+++.| |+++|+|| +.|||.|..++..|++.+++|++.| +++++||.|
T Consensus 2 ~VGd~APdF~--------l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g--~~v~giS~D 70 (220)
T d1prxa_ 2 LLGDVAPNFE--------ANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSID 70 (220)
T ss_dssp CTTCBCCCCE--------EEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESS
T ss_pred CCCCCCCCcE--------eecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhccc--ceeeccccc
Confidence 5899999999 8999996 99999977 79999999 8999999999999999999999987 999999999
Q ss_pred C--CHHHHHHhHhcC----Cc--cccc-CCChHHHHHHhhhcCcC------------ccceEEEecCCCCCCCcccccc
Q 013684 116 E--DLNAFNNYRACM----PW--LAVP-YSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ~--~~~~~~~~~~~~----~~--~~~~-~~d~~~~~~l~~~~~v~------------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
. +...|.+..... .- ..+| ..|.+ .++++.||+. ..+++||||+ +|.|.....
T Consensus 71 s~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~--~~va~~ygv~~~~~~~~~~~~~~~RatFIID~---~g~Ir~~~~ 144 (220)
T d1prxa_ 71 SVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRN--RELAILLGMLDPAEKDEKGMPVTARVVFVFGP---DKKLKLSIL 144 (220)
T ss_dssp CHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTT--CHHHHHTTSSCSCTTCSSSCCTTCCEEEEECT---TSBEEEEEE
T ss_pred cccchhhhhhhhhhccccccccCcccccccCcc--cHHHHHhCCccccccccccceeeeEEEEEEcC---ccceeEEEE
Confidence 5 334444433311 11 1122 22443 7999999984 5689999999 999876543
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=1.6e-12 Score=110.96 Aligned_cols=138 Identities=17% Similarity=0.256 Sum_probs=88.5
Q ss_pred CCCcc-CCCCCceeeccccCCCEEEEEEecCCCh-hhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---CHH
Q 013684 217 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQT 291 (438)
Q Consensus 217 ~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~~~ 291 (438)
+||+| |.+|+ ++++++++||++||+||.+||+ .|......+..+.+.+.... ...+.++.++.+. ..+
T Consensus 7 ~dF~l~d~~G~-~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 79 (169)
T d2b7ka1 7 GPFHLEDMYGN-EFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKY------GITLQPLFITCDPARDSPA 79 (169)
T ss_dssp CCCEEEETTSC-EEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH------CCCCEEEEEESCTTTCCHH
T ss_pred CCeEEEeCCCC-EECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccc------cccceeeeeccccccCchh
Confidence 58999 99999 9999999999999999999997 57778888887777766531 2456677776653 233
Q ss_pred HHHHHHhcCC--CcccccCCchhHHHH----------------HhcCcCceeeEEEECCCCcEEEcccchhhhhccccCC
Q 013684 292 SFESYFGTMP--WLALPFGDPTIKELT----------------KYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAY 353 (438)
Q Consensus 292 ~~~~~~~~~~--~~~~p~~~d~~~~l~----------------~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~ 353 (438)
....+..... |.......+....+. ..|.+..+|++||||++|+++.+.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~--------- 150 (169)
T d2b7ka1 80 VLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNY--------- 150 (169)
T ss_dssp HHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTC---------
T ss_pred hhhhhhccccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCC---------
Confidence 3344433222 222222222222233 3345677899999999999998743211
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 013684 354 PFTEAKLEFLEKQMEEEA 371 (438)
Q Consensus 354 ~~~~~~~~~L~~~i~~~~ 371 (438)
..+...++|.+.|++++
T Consensus 151 -~~~~~~~~I~e~ik~ll 167 (169)
T d2b7ka1 151 -DEKTGVDKIVEHVKSYV 167 (169)
T ss_dssp -CTTHHHHHHHHHHHHCC
T ss_pred -CHHHHHHHHHHHHHHHh
Confidence 12333455666666544
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.40 E-value=1.5e-13 Score=110.07 Aligned_cols=77 Identities=25% Similarity=0.449 Sum_probs=64.5
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+.+..||+|+|+|||+||++|+.+.|.+.++++++++. +.++.|+.|.. ..++
T Consensus 20 l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~---~~~~~i~~d~~------------------------~~l~ 72 (111)
T d1xwaa_ 20 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDEC------------------------EDIA 72 (111)
T ss_dssp HHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC------------------------HHHH
T ss_pred HHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccc---eEEEEEEeecC------------------------cchh
Confidence 45557899999999999999999999999999998753 77777776644 5788
Q ss_pred hhcCcCccceEEEecCCCCCCCcccccc
Q 013684 146 RKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.|+|.++||++++. +|+.+.+..
T Consensus 73 ~~~~V~~~Pt~~~~~----~G~~v~~~~ 96 (111)
T d1xwaa_ 73 MEYNISSMPTFVFLK----NGVKVEEFA 96 (111)
T ss_dssp HHTTCCSSSEEEEEE----TTEEEEEEE
T ss_pred hcCCCccccEEEEEE----CCEEEEEEe
Confidence 999999999999995 888776543
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.39 E-value=2.4e-13 Score=117.45 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=89.2
Q ss_pred cchhHHHHHhhccccc----CCCCCEEeccccCC-CEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 42 LSQWYVQQLRRRMTST----KEIGEEVKVSDLEG-KVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 42 ~~p~f~~~~~~~~~~~----~~~g~~v~l~~~~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
.||+|+ +. +.++++++|++++| |+|||+|| +.|||.|..++..|++.+++|++.| ++||+||.|
T Consensus 1 kAPdF~--------l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g--~~vigIS~D 70 (170)
T d2h01a1 1 QAPSFK--------AEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVD 70 (170)
T ss_dssp BCCCCE--------EEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESS
T ss_pred CCCCeE--------eeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCC--eeEecccCC
Confidence 378888 65 56677899999998 78999999 9999999999999999999999987 999999999
Q ss_pred CCHHHHHHhHhcCC-------cccccCCChHHHHHHhhhcCcC-----ccceEEEecCCCCCCCccccc
Q 013684 116 EDLNAFNNYRACMP-------WLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 116 ~~~~~~~~~~~~~~-------~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lvd~~~~~G~v~~~~ 172 (438)
. ....+++.+++. .......|.+ ..+.+.|++. ..++++|||+ +|.|....
T Consensus 71 ~-~~~~~~~~~~~~~~~~~~~~~f~llsD~~--~~~~~~ygv~~~~~~~~R~tfiId~---~G~I~~~~ 133 (170)
T d2h01a1 71 S-KFTHLAWKKTPLSQGGIGNIKHTLISDIS--KSIARSYDVLFNESVALRAFVLIDK---QGVVQHLL 133 (170)
T ss_dssp C-HHHHHHHHTSCGGGTCCCSCSSEEEECTT--SHHHHHTTCEETTTEECCEEEEECT---TSBEEEEE
T ss_pred c-HHHHHhHhhhhhhhccccccCCceeEcCc--cHHHHHhCCccccccceeeeEEEcC---CCeEEEEE
Confidence 4 334455544321 1111122443 7889999883 4689999999 99988654
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.38 E-value=1.1e-13 Score=105.23 Aligned_cols=68 Identities=13% Similarity=0.280 Sum_probs=55.6
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+|+.+++|||+||++|+.+.|.+.++.+.+.+ .+.++.+..|.. .++
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~----------~~~~~~~~~d~~-----------------------~~l 48 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPD----------AVEVEYINVMEN-----------------------PQK 48 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSS----------SEEEEEEESSSS-----------------------CCT
T ss_pred CceEEEEEECCCCcChHhhhhhcccccccccc----------cccccccccccc-----------------------ccc
Confidence 58899999999999999999999999888764 367777777644 567
Q ss_pred HHhcCcCceeeEEEECCCCcEE
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~ 337 (438)
+++|+|.++||++ ++++|+++
T Consensus 49 a~~~~V~~~Pt~~-i~~~g~~~ 69 (85)
T d1fo5a_ 49 AMEYGIMAVPTIV-INGDVEFI 69 (85)
T ss_dssp TTSTTTCCSSEEE-ETTEEECC
T ss_pred cccCCceEeeEEE-EECCcEEE
Confidence 8999999999975 56777643
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1e-13 Score=112.47 Aligned_cols=81 Identities=21% Similarity=0.393 Sum_probs=64.2
Q ss_pred cccCCCEEEEEEecC-------CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcc
Q 013684 232 SSLVGKTVGLYFSAR-------WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA 304 (438)
Q Consensus 232 ~~~~gk~vll~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~ 304 (438)
++.+||+|+|+|||+ ||++|+++.|.+.++++.+++ ++.++.|+++...+
T Consensus 17 ~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~----------~~~~~~vdv~~~~~------------- 73 (119)
T d1woua_ 17 EQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE----------GCVFIYCQVGEKPY------------- 73 (119)
T ss_dssp HTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT----------TEEEEEEECCCHHH-------------
T ss_pred HHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC----------ceEEEEEECCCCcc-------------
Confidence 445789999999995 999999999999999887764 48899999874321
Q ss_pred cccCCchhHHHHHhcCcCceeeEEEECCCCcEEE
Q 013684 305 LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 305 ~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
..|.+..+++.|+|.++||+++++..+++..
T Consensus 74 ---~~d~~~~l~~~~~V~~iPT~i~~~~g~~l~~ 104 (119)
T d1woua_ 74 ---WKDPNNDFRKNLKVTAVPTLLKYGTPQKLVE 104 (119)
T ss_dssp ---HHCTTCHHHHHHCCCSSSEEEETTSSCEEEG
T ss_pred ---cchhhhhHHHhCCeEEEEEEEEEECCeEEee
Confidence 1133467899999999999999965555653
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=6.1e-14 Score=115.75 Aligned_cols=94 Identities=10% Similarity=0.051 Sum_probs=73.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++|+|.|||+|||+|+.+.|.|.++.++|.+. .+.++.|++|. +.+
T Consensus 35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~---------~~~~a~Vd~d~-----------------------~~~ 82 (132)
T d2hfda1 35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY---------TWQVAIADLEQ-----------------------SEA 82 (132)
T ss_dssp SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTS---------CEEEEEECHHH-----------------------HHH
T ss_pred CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCC---------cceeEEEEecC-----------------------CHH
Confidence 3478999999999999999999999999998764 45666666553 378
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccCC
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLP 375 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~~ 375 (438)
+++.|+|.++||++++ ++|+.+.+. .|.. + .++|...|++++....
T Consensus 83 la~~~~V~~~PT~~~~-~~G~~v~~~-------~G~~----~---~~~l~~~i~~ll~~~~ 128 (132)
T d2hfda1 83 IGDRFGVFRFPATLVF-TGGNYRGVL-------NGIH----P---WAELINLMRGLVEPQQ 128 (132)
T ss_dssp HHHHHTCCSCCEEEEE-ETTEEEEEE-------CCCS----C---HHHHHHHHHHHHSCSS
T ss_pred HHHhhccCcceeEEEE-EcCcEeeee-------cCCC----C---HHHHHHHHHHHhCccc
Confidence 9999999999999999 899998873 2322 2 3566666776666544
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.37 E-value=1.5e-13 Score=111.46 Aligned_cols=73 Identities=14% Similarity=0.199 Sum_probs=54.5
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
..++|+|.||++|||+|+.+.|.|.++.++|.+. ++.++.|++|. ..+
T Consensus 29 ~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~---------~~~~~~Vd~d~-----------------------~~~ 76 (119)
T d2es7a1 29 GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQF---------DWQVAVADLEQ-----------------------SEA 76 (119)
T ss_dssp CSEEEEECCCSCC----CCHHHHHHHHHHTCTTS---------CCEEEEECHHH-----------------------HHH
T ss_pred CCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCC---------ceEEEEEECCC-----------------------CHH
Confidence 4578999999999999999999999999998753 46666665543 378
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.|||+++||++++ ++|+.+.+.
T Consensus 77 l~~~~~V~~~Pt~~~~-~~G~~v~~~ 101 (119)
T d2es7a1 77 IGDRFNVRRFPATLVF-TDGKLRGAL 101 (119)
T ss_dssp HHHTTTCCSSSEEEEE-SCC----CE
T ss_pred HHHhcCcCcceEEEEE-EcCeEEEEe
Confidence 9999999999999999 899999873
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.34 E-value=5.5e-13 Score=101.36 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=52.1
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh
Q 013684 239 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 318 (438)
Q Consensus 239 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 318 (438)
.+..||++||++|+++.|.++++.+++.+ ++.++.|++|.+ .+++++
T Consensus 4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~----------~v~~~~vd~d~~-----------------------~~l~~~ 50 (85)
T d1nhoa_ 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD----------KIDVEKIDIMVD-----------------------REKAIE 50 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHHHHHHHHHCS----------SCCEEEECTTTC-----------------------GGGGGG
T ss_pred EEEEEECCCCcchHHHHHHHhhhcccccc----------cccccccccccc-----------------------hhhHHh
Confidence 35669999999999999999999999864 478888888765 678999
Q ss_pred cCcCceeeEEEECCCCc
Q 013684 319 FDVQGIPCLVIIGPEGK 335 (438)
Q Consensus 319 ~~v~~~P~~~lid~~G~ 335 (438)
|||.++||+++ +.+|+
T Consensus 51 ~~V~~~Pt~~~-~~~~~ 66 (85)
T d1nhoa_ 51 YGLMAVPAIAI-NGVVR 66 (85)
T ss_dssp TCSSCSSEEEE-TTTEE
T ss_pred cCceEeCEEEE-CCcEE
Confidence 99999999755 55544
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.34 E-value=9e-13 Score=104.34 Aligned_cols=72 Identities=24% Similarity=0.397 Sum_probs=62.2
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+++|+|||+||++|+.+.|.+.++++++++. +.++.|+.|.. ..+++.|+
T Consensus 16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~ 68 (105)
T d1nw2a_ 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDEN------------------------PETTSQFG 68 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCcEEEEEECCCCCCcccccchhhhhhhhcCCc---eEEEEEECCCC------------------------cccHHHCC
Confidence 4689999999999999999999999999998753 88888877755 67889999
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|.++||++++. +|+.+.+.
T Consensus 69 V~~~Pt~~~~~----~G~~~~~~ 87 (105)
T d1nw2a_ 69 IMSIPTLILFK----GGEPVKQL 87 (105)
T ss_dssp CCBSSEEEEEE----TTEEEEEE
T ss_pred cceeeEEEEEE----CCEEEEEE
Confidence 99999999996 88776553
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.34 E-value=8.9e-13 Score=104.73 Aligned_cols=72 Identities=19% Similarity=0.390 Sum_probs=61.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+|+|+|||+||++|+.+.|.+.++.+++.+. +.++.|++|.. ..++++|+
T Consensus 18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~d~~------------------------~~l~~~~~ 70 (107)
T d1dbya_ 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDES------------------------PNVASEYG 70 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHHT
T ss_pred CCCcEEEEEECCCCCCccccChHHHHHHHhhccc---ceEEEEecccc------------------------hhHHHHhc
Confidence 3689999999999999999999999998887653 78888877754 67889999
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|.++||+++++ +|+.+.+.
T Consensus 71 V~~~Pt~~~~~----~G~~v~~~ 89 (107)
T d1dbya_ 71 IRSIPTIMVFK----GGKKCETI 89 (107)
T ss_dssp CCSSCEEEEES----SSSEEEEE
T ss_pred ccceEEEEEEE----CCeEEEEE
Confidence 99999999996 88877654
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.5e-12 Score=109.16 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=85.1
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCc-cchhhHHHHHHHHHHHhcCC--CCEEEEEEecC---CCHHHHHHhHhcC-
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNG--SDFEVVFVSSD---EDLNAFNNYRACM- 128 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~--~~~~iv~vs~D---~~~~~~~~~~~~~- 128 (438)
+.|.+|+++++++++||++||+||++||+ .|....+.+.++++++...+ ..+.++.++.+ .......++....
T Consensus 5 L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
T d1wp0a1 5 LTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFS 84 (160)
T ss_dssp EEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTC
T ss_pred EEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcC
Confidence 88999999999999999999999999997 79999999999999987764 33566666665 3445555655544
Q ss_pred -CcccccCCChHHHHHHhhhcCcC---------------ccceEEEecCCCCCCCccccc
Q 013684 129 -PWLAVPYSDLETKKALNRKFDIE---------------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 129 -~~~~~~~~d~~~~~~l~~~~~v~---------------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+|..+.. +......+...|++. +.++++|||+ +|+++...
T Consensus 85 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~---~G~i~~~~ 140 (160)
T d1wp0a1 85 PKLVGLTG-TREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGP---DGEFLDYF 140 (160)
T ss_dssp TTCEEEEC-CHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECT---TSCEEEEE
T ss_pred CCcccccC-chHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECC---CCcEEEEE
Confidence 4544443 333335666776653 3468899999 99998664
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=2.7e-13 Score=109.88 Aligned_cols=81 Identities=15% Similarity=0.360 Sum_probs=63.3
Q ss_pred ccccCCCEEEEEEecc-------CCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCCh
Q 013684 66 VSDLEGKVTALYFSAN-------WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL 138 (438)
Q Consensus 66 l~~~~gk~vll~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~ 138 (438)
+++.+||+|+|+|||+ ||++|+.+.|.+.++++.+++ ++.++.|++|+..+ ..
T Consensus 16 l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~---~~~~~~vdv~~~~~-----------------~~ 75 (119)
T d1woua_ 16 VEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE---GCVFIYCQVGEKPY-----------------WK 75 (119)
T ss_dssp HHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT---TEEEEEEECCCHHH-----------------HH
T ss_pred HHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC---ceEEEEEECCCCcc-----------------cc
Confidence 3455789999999995 999999999999999887753 48999998875332 11
Q ss_pred HHHHHHhhhcCcCccceEEEecCCCCCCCcc
Q 013684 139 ETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 139 ~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
+....+++.|+|.++||+++++. .+++.
T Consensus 76 d~~~~l~~~~~V~~iPT~i~~~~---g~~l~ 103 (119)
T d1woua_ 76 DPNNDFRKNLKVTAVPTLLKYGT---PQKLV 103 (119)
T ss_dssp CTTCHHHHHHCCCSSSEEEETTS---SCEEE
T ss_pred hhhhhHHHhCCeEEEEEEEEEEC---CeEEe
Confidence 11257889999999999999985 55554
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=8.6e-13 Score=106.51 Aligned_cols=82 Identities=15% Similarity=0.281 Sum_probs=61.0
Q ss_pred eccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHH
Q 013684 65 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 144 (438)
Q Consensus 65 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 144 (438)
.+++.+||+|+|+|||+||++|+.+.|.+....+..+.. .++.++.+.++.+. +....+
T Consensus 16 ~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~--------------------~~~~~l 74 (117)
T d2fwha1 16 ALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKAL-ADTVLLQANVTAND--------------------AQDVAL 74 (117)
T ss_dssp HHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHT-TTSEEEEEECTTCC--------------------HHHHHH
T ss_pred HHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhc-cceEEEecccccch--------------------hHHHHH
Confidence 345568999999999999999999999884433333322 24666666654331 122788
Q ss_pred hhhcCcCccceEEEecCCCCCCCccc
Q 013684 145 NRKFDIEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 145 ~~~~~v~~~P~~~lvd~~~~~G~v~~ 170 (438)
++.|+|.++|+++++++ +|+++.
T Consensus 75 ~~~~~v~~~Pt~~~~~~---~G~~~~ 97 (117)
T d2fwha1 75 LKHLNVLGLPTILFFDG---QGQEHP 97 (117)
T ss_dssp HHHTTCCSSSEEEEECT---TSCBCG
T ss_pred HhhhehhhceEEEEEeC---CCcEEe
Confidence 99999999999999999 998764
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.31 E-value=2e-12 Score=104.70 Aligned_cols=70 Identities=17% Similarity=0.399 Sum_probs=60.8
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.++.++|.||++||++|+++.|.+.++++.+.+. ++.|+.|+++.. .+
T Consensus 26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~---------~v~~~~vd~~~~-----------------------~~ 73 (119)
T d2b5ea4 26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK---------NITLAQIDCTEN-----------------------QD 73 (119)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---------TCEEEEEETTTC-----------------------HH
T ss_pred cCCeEEEEEECCccCcccccchhhhhhhhhhccc---------ceeeeeeeccch-----------------------HH
Confidence 4689999999999999999999999999988644 688888988755 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEE
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
++++|+|.++||++++ ++|+..
T Consensus 74 l~~~~~v~~~Pti~~f-~~g~~~ 95 (119)
T d2b5ea4 74 LCMEHNIPGFPSLKIF-KNSDVN 95 (119)
T ss_dssp HHHHTTCCSSSEEEEE-ETTCTT
T ss_pred HHHHhccccCCeEEEE-ECCEEe
Confidence 8999999999999999 676443
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.31 E-value=1.7e-12 Score=103.27 Aligned_cols=71 Identities=20% Similarity=0.431 Sum_probs=61.2
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|+|||+||++|+.+.|.|.++++++++. +.++.|++|.. ..+++.|+|
T Consensus 20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~d~~------------------------~~l~~~~~I 72 (108)
T d1thxa_ 20 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPN------------------------PTTVKKYKV 72 (108)
T ss_dssp SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTC------------------------HHHHHHTTC
T ss_pred CCcEEEEEECCCCCCccccchHHHHHHHhcCCc---ceeceeccccc------------------------HHHHHHhcc
Confidence 479999999999999999999999999988654 78888877755 678999999
Q ss_pred CccceEEEecCCCCCCCccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.++||++++. +|+.+.+.
T Consensus 73 ~~~Pt~~~~~----~g~~v~~~ 90 (108)
T d1thxa_ 73 EGVPALRLVK----GEQILDST 90 (108)
T ss_dssp CSSSEEEEEE----TTEEEEEE
T ss_pred cCCCEEEEEE----CCEEEEEE
Confidence 9999999997 78776553
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=1.4e-12 Score=103.78 Aligned_cols=73 Identities=21% Similarity=0.450 Sum_probs=60.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++|+|+|||+||++|+.+.|.+.+++.++.. ++.++.+++|.. ..+++.|+
T Consensus 19 ~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~vd~d~~------------------------~~l~~~~~ 71 (108)
T d2trxa_ 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQN------------------------PGTAPKYG 71 (108)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TEEEEEEETTTC------------------------TTHHHHTT
T ss_pred CCCcEEEEEECCCCCCccccCcHHHHHHHHhhc---ceeeeeccccch------------------------hhHHHHhC
Confidence 368999999999999999999999999887654 488888877644 56889999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.++||++++. +|+.+.+..
T Consensus 72 v~~~PT~~~~~----~G~~v~~~~ 91 (108)
T d2trxa_ 72 IRGIPTLLLFK----NGEVAATKV 91 (108)
T ss_dssp CCSSSEEEEEE----TTEEEEEEE
T ss_pred CCcEEEEEEEE----CCEEEEEEe
Confidence 99999998885 887776543
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.30 E-value=1.6e-12 Score=102.71 Aligned_cols=71 Identities=18% Similarity=0.378 Sum_probs=60.7
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+|+++|+|||+||++|+.+.|.+.++.+++.+. +.++.|+.|.. ..++++|+|
T Consensus 17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~v~~d~~------------------------~~l~~~~~V 69 (104)
T d1fb6a_ 17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEA------------------------PGIATQYNI 69 (104)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHTTC
T ss_pred CCcEEEEEEcCccCCccccCchhHHHHHhhcCc---cceeEEecccc------------------------hhhhhhcce
Confidence 579999999999999999999999999998654 66777777654 678999999
Q ss_pred CccceEEEecCCCCCCCccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.++||++++. +|+.+.+.
T Consensus 70 ~~~Pt~~~~~----~G~~v~~~ 87 (104)
T d1fb6a_ 70 RSIPTVLFFK----NGERKESI 87 (104)
T ss_dssp CSSSEEEEEE----TTEEEEEE
T ss_pred eeeeEEEEEE----cCeEEEEE
Confidence 9999999985 88877654
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.30 E-value=1.6e-12 Score=104.37 Aligned_cols=72 Identities=21% Similarity=0.491 Sum_probs=60.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+|+|+|||+||++|+.+.|.|.++.+++. ++.++.|+.|.. ..++++|+
T Consensus 25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~d~~------------------------~~l~~~~~ 76 (113)
T d1ti3a_ 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP----NVTFLKVDVDEL------------------------KAVAEEWN 76 (113)
T ss_dssp SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTC------------------------HHHHHHHH
T ss_pred CCCEEEEEEEcCccccchhhhhhhhhhhccCC----CceEEeeeeecc------------------------ccccccCe
Confidence 46899999999999999999999999988862 477777776644 67889999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.++||++++. +|+.+.+..
T Consensus 77 I~~~Pt~~~~k----~G~~v~~~~ 96 (113)
T d1ti3a_ 77 VEAMPTFIFLK----DGKLVDKTV 96 (113)
T ss_dssp CSSTTEEEEEE----TTEEEEEEE
T ss_pred ecccceEEEEE----CCEEEEEEc
Confidence 99999999996 888776644
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.30 E-value=3.9e-12 Score=98.81 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=58.4
Q ss_pred ccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 233 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 233 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
++.|.+.++.|+++|||+|+.+.|.++++.+.+. ++.+..|+++..
T Consensus 12 ~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~-----------~i~~~~vd~~~~----------------------- 57 (96)
T d1hyua4 12 DIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-----------RIKHTAIDGGTF----------------------- 57 (96)
T ss_dssp HCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-----------TEEEEEEETTTC-----------------------
T ss_pred hcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC-----------ceEEEEEecccc-----------------------
Confidence 4567788999999999999999999998876532 588888888765
Q ss_pred HHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 313 KELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 313 ~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.++++.|+|+++||+++ +|+.++.
T Consensus 58 ~~l~~~~~I~~vPt~~~---ng~~~~~ 81 (96)
T d1hyua4 58 QNEITERNVMGVPAVFV---NGKEFGQ 81 (96)
T ss_dssp HHHHHHTTCCSSSEEEE---TTEEEEE
T ss_pred hHHHhhcccccccEEEE---CCEEEEe
Confidence 67899999999999755 7888765
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=2.8e-12 Score=106.25 Aligned_cols=71 Identities=18% Similarity=0.396 Sum_probs=60.9
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++|+|+|.|||+||++|+.+.|.|.++++++++. +.++.|++|.. .++++.|+
T Consensus 21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~VDvd~~------------------------~~la~~~~ 73 (137)
T d1qgva_ 21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEV------------------------PDFNKMYE 73 (137)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTC------------------------CTTTTSSC
T ss_pred CCCEEEEEEECCCCccchhcChHHHHHHHHhhcc---ceEEEeecccc------------------------chhhhhcC
Confidence 4689999999999999999999999999999753 88888877755 56789999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++||++++. +|+.+..
T Consensus 74 I~~~PT~~~f~----~g~~i~~ 91 (137)
T d1qgva_ 74 LYDPCTVMFFF----RNKHIMI 91 (137)
T ss_dssp SCSSCEEEEEE----TTEEEEE
T ss_pred eeeEEEEEEEe----CCcEEEE
Confidence 99999999997 6765543
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.29 E-value=3.8e-12 Score=102.41 Aligned_cols=76 Identities=16% Similarity=0.399 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++|||+|+.+.|.|.++.++++. .+.+|+++...+. +..+.
T Consensus 25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~------------~v~~v~~~~~~~~-----------------~~~~~ 75 (115)
T d1zmaa1 25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA------------HIYFINSEEPSQL-----------------NDLQA 75 (115)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC------------CCEEEETTCGGGH-----------------HHHHH
T ss_pred cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh------------hhhhheeeccccc-----------------ccccc
Confidence 467899999999999999999999999888753 3566676643210 12357
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+.++|+|.++||++++ ++|+++.+.
T Consensus 76 ~~~~~~V~~~PTli~~-~~gk~~~~~ 100 (115)
T d1zmaa1 76 FRSRYGIPTVPGFVHI-TDGQINVRC 100 (115)
T ss_dssp HHHHHTCCSSCEEEEE-ETTEEEEEC
T ss_pred cccccccccccEEEEE-ECCEEEEEE
Confidence 8899999999999999 799988774
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.29 E-value=1.7e-12 Score=103.98 Aligned_cols=73 Identities=18% Similarity=0.253 Sum_probs=62.1
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+|+|+||++||++|+.+.|.|.++++++++ ++.++.|++|.. ..++++|+
T Consensus 23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~---~v~~~~vd~d~~------------------------~~l~~~~~ 75 (112)
T d1ep7a_ 23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG---KVIFLKVDVDAV------------------------AAVAEAAG 75 (112)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTT------------------------HHHHHHHT
T ss_pred cCCeEEEEEEcCCcCCCcccchhhhhhhhcccc---eEEEEEeecccc------------------------cccccccc
Confidence 478999999999999999999999999999864 377887877644 67889999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.++||++++. +|+.+.+..
T Consensus 76 v~~~Pt~~~~~----~G~~v~~~~ 95 (112)
T d1ep7a_ 76 ITAMPTFHVYK----DGVKADDLV 95 (112)
T ss_dssp CCBSSEEEEEE----TTEEEEEEE
T ss_pred ccCCCEEEEEE----CCEEEEEEe
Confidence 99999999985 888776643
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.29 E-value=2.7e-12 Score=103.16 Aligned_cols=72 Identities=19% Similarity=0.387 Sum_probs=60.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+|||+||++|+.+.|.|.++.+.++ ++.++.|+.|.. ..++++|+
T Consensus 27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~----~~~~~~vd~~~~------------------------~~l~~~~~ 78 (114)
T d1xfla_ 27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP----NVLFLKVDTDEL------------------------KSVASDWA 78 (114)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTS------------------------HHHHHHTT
T ss_pred cCCeEEEEEEcCCCCCccccccchhhhccccc----ccceeEEEeeec------------------------eeeccccc
Confidence 47899999999999999999999999988873 377777766644 67889999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.++||++++. +|+.+.+..
T Consensus 79 V~~~Pt~~~~~----~G~~v~~~~ 98 (114)
T d1xfla_ 79 IQAMPTFMFLK----EGKILDKVV 98 (114)
T ss_dssp CCSSSEEEEEE----TTEEEEEEE
T ss_pred eeeeEEEEEEE----CCEEEEEEe
Confidence 99999999995 888776543
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.28 E-value=1.1e-12 Score=116.95 Aligned_cols=118 Identities=12% Similarity=0.140 Sum_probs=90.8
Q ss_pred HhhccchhHHHHHhhcccccCCCCC-EEecccc-CCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGE-EVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~-~v~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
.+|+.+|+|+ +.+.++. +++++++ +||+++|+|| +.|||.|..++..+++.+++|++.| ++|++||.
T Consensus 3 ~iGd~aPdF~--------l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~--~~vigiS~ 72 (219)
T d1xcca_ 3 HLGATFPNFT--------AKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSC 72 (219)
T ss_dssp CTTCBCCCCE--------ECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEES
T ss_pred cCCCCCCCcE--------eeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccc--eEEEeecC
Confidence 5899999999 7655432 5899996 8999999999 9999999999999999999999986 99999999
Q ss_pred CC--CHHHHHHhHh------cCCcccccCCChHHHHHHhhhcCcC------------ccceEEEecCCCCCCCccccc
Q 013684 115 DE--DLNAFNNYRA------CMPWLAVPYSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 115 D~--~~~~~~~~~~------~~~~~~~~~~d~~~~~~l~~~~~v~------------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|. ++..|.+..+ +.+++- ..|.+ .++++.||+. ...++||||+ +|+|....
T Consensus 73 Ds~~sh~~w~~~~~~~~~~~~l~fpl--lsD~~--~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp---~g~Ir~~~ 143 (219)
T d1xcca_ 73 NSKESHDKWIEDIKYYGKLNKWEIPI--VCDES--RELANKLKIMDEQEKDITGLPLTCRCLFFISP---EKKIKATV 143 (219)
T ss_dssp SCHHHHHHHHHHHHHHHTCSCCCCCE--EECTT--SHHHHHHTCEEEEEECTTSCEEECEEEEEECT---TSBEEEEE
T ss_pred ccHhHHhHHhhhhHhhcccCCCCccc--ccccc--cHHHHHhCCcccccccCcccceeeeeeEEEcC---cceEEEEE
Confidence 94 2333433332 122222 22444 7899999982 3469999999 99987553
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=5.9e-12 Score=109.46 Aligned_cols=69 Identities=17% Similarity=0.107 Sum_probs=60.9
Q ss_pred ccCCC-CCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC-------CHHHHHHhHh
Q 013684 56 STKEI-GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLNAFNNYRA 126 (438)
Q Consensus 56 ~~~~~-g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~-------~~~~~~~~~~ 126 (438)
+++++ |+.++|++++||+|||.+||+||++|+...+.|++++++++++| ++|++++.+. +.++..++++
T Consensus 8 ~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g--~~Il~fP~nqF~~qE~~~~~ei~~f~~ 84 (184)
T d2f8aa1 8 ARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQFGHQENAKNEEILNSLK 84 (184)
T ss_dssp ECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTTTCSCHHHHHHHHH
T ss_pred EEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccc--eeEEEeeccccccccccchhhhhhhhh
Confidence 78876 67899999999999999999999999999999999999999987 9999999752 4556666664
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=2.1e-12 Score=102.19 Aligned_cols=72 Identities=17% Similarity=0.325 Sum_probs=59.9
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++|+|+|+|||+||++|+.+.|.|.++.+++. ++.++.|+.|.. ..+++.|+
T Consensus 19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~----~~~~~~vd~d~~------------------------~~~~~~~~ 70 (105)
T d2ifqa1 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS----NVIFLEVDVDDC------------------------QDVASECE 70 (105)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCEEEEEEEcCCccchhhhhhhhhhhccccc----cceeeecccccC------------------------HhHHHHcC
Confidence 46899999999999999999999999988874 355666666644 67889999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|+++||++++. +|+.+.+..
T Consensus 71 V~~~Pt~~~~~----~G~~v~~~~ 90 (105)
T d2ifqa1 71 VKCMPTFQFFK----KGQKVGEFS 90 (105)
T ss_dssp CCBSSEEEEEE----TTEEEEEEE
T ss_pred ceEEEEEEEEE----CCEEEEEEe
Confidence 99999999995 898876643
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.27 E-value=2.7e-12 Score=102.92 Aligned_cols=72 Identities=18% Similarity=0.348 Sum_probs=61.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+|||+||++|+.+.|.|.++++++. ++.++.|+.|+. ..+++.|+
T Consensus 25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~------------------------~~l~~~~~ 76 (113)
T d1r26a_ 25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP----TVKFAKVDADNN------------------------SEIVSKCR 76 (113)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCeEEEEEECCCCccchhhceeccccccccc----cccccccccccc------------------------hhhHHHcc
Confidence 46899999999999999999999999999873 488888877754 67899999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.++||++++. +|+.+.+..
T Consensus 77 V~~~Pt~~~~~----~G~~v~~~~ 96 (113)
T d1r26a_ 77 VLQLPTFIIAR----SGKMLGHVI 96 (113)
T ss_dssp CCSSSEEEEEE----TTEEEEEEE
T ss_pred ccCCCEEEEEE----CCEEEEEEe
Confidence 99999999986 888876543
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.6e-12 Score=101.94 Aligned_cols=72 Identities=8% Similarity=0.120 Sum_probs=60.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+++|+|||+||++|+.+.|.|.+++++++ ++.++.|++|.. ..+++.|+
T Consensus 20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~----~~~f~~vd~d~~------------------------~~l~~~~~ 71 (107)
T d1gh2a_ 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP----QAVFLEVDVHQC------------------------QGTAATNN 71 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTS------------------------HHHHHHTT
T ss_pred CCCEEEEEEECCCCCCccccchhhhccccccc----cccccccccccc------------------------hhhhhhcC
Confidence 47899999999999999999999999999874 367777766644 67889999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.++||++++. +|+.+.+..
T Consensus 72 v~~~Pt~~~~~----~G~~v~~~~ 91 (107)
T d1gh2a_ 72 ISATPTFQFFR----NKVRIDQYQ 91 (107)
T ss_dssp CCSSSEEEEEE----TTEEEEEEE
T ss_pred ceeceEEEEEE----CCEEEEEEe
Confidence 99999999995 888876643
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=9.1e-13 Score=106.91 Aligned_cols=71 Identities=23% Similarity=0.468 Sum_probs=58.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+|+++|.||++||++|+.+.|.+.++.+.+.+. +..+.++.|+++.. ..
T Consensus 23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~-------~~~v~~~~vd~~~~-----------------------~~ 72 (120)
T d1meka_ 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAE-------GSEIRLAKVDATEE-----------------------SD 72 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTT-------CCCCBCEEEETTTC-----------------------CS
T ss_pred cCCcEEEEEECCCcCCccccchhhhhhccccccc-------ccceeeeccccccc-----------------------hh
Confidence 4689999999999999999999999999998754 34566777776644 56
Q ss_pred HHHhcCcCceeeEEEECCCCcE
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i 336 (438)
++++|+|.++||++++ ++|+.
T Consensus 73 l~~~~~i~~~Pt~~~~-~~G~~ 93 (120)
T d1meka_ 73 LAQQYGVRGYPTIKFF-RNGDT 93 (120)
T ss_dssp SHHHHTCCSSSEEEEE-ESSCS
T ss_pred HHHHhCCccCCeEEEE-ECCeE
Confidence 7889999999999999 56644
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.25 E-value=2e-12 Score=98.13 Aligned_cols=68 Identities=21% Similarity=0.370 Sum_probs=53.8
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+|+.++.|||+||++|+.+.|.+.++.+++.+. +.++.++.|.. .+++++|+|
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~~~~d~~------------------------~~la~~~~V 54 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMEN------------------------PQKAMEYGI 54 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSS------------------------CCTTTSTTT
T ss_pred CceEEEEEECCCCcChHhhhhhccccccccccc---ccccccccccc------------------------ccccccCCc
Confidence 588999999999999999999999998886543 66666665543 456789999
Q ss_pred CccceEEEecCCCCCCCcc
Q 013684 151 EGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~ 169 (438)
.++||+++ +. +|+.+
T Consensus 55 ~~~Pt~~i-~~---~g~~~ 69 (85)
T d1fo5a_ 55 MAVPTIVI-NG---DVEFI 69 (85)
T ss_dssp CCSSEEEE-TT---EEECC
T ss_pred eEeeEEEE-EC---CcEEE
Confidence 99999765 55 66543
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.23 E-value=1.5e-11 Score=97.33 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=59.0
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcC-CCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHH
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN-GSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 144 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 144 (438)
+....++++++.||++|||+|+.+.|.+.+++.+.... +..+.++.|+.+.. .++
T Consensus 10 ~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~------------------------~~l 65 (107)
T d1a8la2 10 IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY------------------------PEW 65 (107)
T ss_dssp HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGC------------------------HHH
T ss_pred HHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccc------------------------ccc
Confidence 34555677888899999999999999999998775432 23356665655433 678
Q ss_pred hhhcCcCccceEEEecCCCCCCCccccc
Q 013684 145 NRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 145 ~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+++|+|.++||++++ + +|+.+.+.
T Consensus 66 ~~~~~V~~vPTi~i~-~---~G~~~~~~ 89 (107)
T d1a8la2 66 ADQYNVMAVPKIVIQ-V---NGEDRVEF 89 (107)
T ss_dssp HHHTTCCSSCEEEEE-E---TTEEEEEE
T ss_pred ccccccccceEEEEE-e---CCeEEEEE
Confidence 999999999987665 5 88776554
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.20 E-value=1.2e-11 Score=97.26 Aligned_cols=71 Identities=17% Similarity=0.316 Sum_probs=59.5
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++||++|+.+.|.+.++.+++. +..++.++.|.. .++++.|+
T Consensus 17 ~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~----~~~~~~vd~d~~------------------------~~~~~~~~ 68 (103)
T d1syra_ 17 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT----KMVFIKVDVDEV------------------------SEVTEKEN 68 (103)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTT------------------------HHHHHHTT
T ss_pred CCCcEEEEEeCCcccCcccccccchhhhhccc----ceEEEeeccccC------------------------cceeeeee
Confidence 36899999999999999999999999999874 356777766644 67889999
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|.++||++++. +|+.+.+.
T Consensus 69 V~~~Pt~i~~k----~G~~v~~~ 87 (103)
T d1syra_ 69 ITSMPTFKVYK----NGSSVDTL 87 (103)
T ss_dssp CCSSSEEEEEE----TTEEEEEE
T ss_pred eecceEEEEEE----CCEEEEEE
Confidence 99999999886 88877654
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.19 E-value=1.1e-11 Score=99.22 Aligned_cols=73 Identities=18% Similarity=0.340 Sum_probs=60.1
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+++|+||++||++|+.+.|.|.++.+++. ++.++.|+.|.. ..++++.|+
T Consensus 24 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~----~v~~~~vd~~~~-----------------------~~~l~~~~~ 76 (112)
T d1f9ma_ 24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL----DVIFLKLDCNQE-----------------------NKTLAKELG 76 (112)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSST-----------------------THHHHHHHC
T ss_pred CCCEEEEEEEcCCCcchHHHHHHHhhhccccc----cceeeccccccc-----------------------chhhHhhee
Confidence 45899999999999999999999999999874 366776665532 168899999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.++||++++. +|+.+.+..
T Consensus 77 V~~~Pt~~~~k----~G~~v~~~~ 96 (112)
T d1f9ma_ 77 IRVVPTFKILK----ENSVVGEVT 96 (112)
T ss_dssp CSSSSEEEEEE----TTEEEEEEE
T ss_pred eccCCEEEEEE----CCEEEEEEe
Confidence 99999999994 898876644
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.19 E-value=5.7e-12 Score=105.03 Aligned_cols=70 Identities=21% Similarity=0.458 Sum_probs=55.7
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.++.|+|.||++||++|+.+.|.|.++++.|++. ...+..+.+|.+ ..
T Consensus 29 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~---------~~~v~~~~~d~~-----------------------~~ 76 (140)
T d2b5ea1 29 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANA---------TSDVLIAKLDHT-----------------------EN 76 (140)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHH---------CSSCEEEEEEGG-----------------------GC
T ss_pred CCCCEEEEEEeccCcccchhHHHHHHHHHHHhcc---------ccceEEEeeecc-----------------------ch
Confidence 3678999999999999999999999999999875 333455555543 33
Q ss_pred HHHhcCcCceeeEEEECCCCcEE
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
+++.|+|.++||++++ ++|+..
T Consensus 77 ~~~~~~v~~~Ptl~~f-~~g~~~ 98 (140)
T d2b5ea1 77 DVRGVVIEGYPTIVLY-PGGKKS 98 (140)
T ss_dssp CCSSCCCSSSSEEEEE-CCTTSC
T ss_pred hccccccccCCeEEEE-ECCEEc
Confidence 5778999999999999 566544
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.2e-11 Score=102.27 Aligned_cols=77 Identities=18% Similarity=0.352 Sum_probs=53.3
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
+...||+++|+|||+||++|+.+.|.+.+..+..+.. .++.+|.|+.+..
T Consensus 21 A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~--------~~fv~v~vd~~~~---------------------- 70 (135)
T d1sena_ 21 AAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS--------HNFVMVNLEDEEE---------------------- 70 (135)
T ss_dssp HHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH--------TTSEEEEEEGGGS----------------------
T ss_pred HHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhc--------CCcEEEeCCCCcC----------------------
Confidence 3446899999999999999999999988765544432 2444444443322
Q ss_pred hHHHH-HhcCcCceeeEEEECCCCcEEEc
Q 013684 312 IKELT-KYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 312 ~~~l~-~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..+. ..+...++|+++++|++|+++..
T Consensus 71 -~~~~~~~~~~~~~Pt~~~~d~~G~~~~~ 98 (135)
T d1sena_ 71 -PKDEDFSPDGGYIPRILFLDPSGKVHPE 98 (135)
T ss_dssp -CSCGGGCTTCSCSSEEEEECTTSCBCTT
T ss_pred -HHHHHHHhhcccceeEEEECCCCeEEEE
Confidence 1111 22344579999999999998865
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.15 E-value=9.8e-12 Score=100.43 Aligned_cols=76 Identities=12% Similarity=0.223 Sum_probs=54.3
Q ss_pred ccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhh
Q 013684 68 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 147 (438)
Q Consensus 68 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 147 (438)
...+++|++.||++|||+|+.+.|.|.++.+++.+.. +.++.|+.| ...++++.
T Consensus 27 ~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~--~~~~~Vd~d------------------------~~~~l~~~ 80 (119)
T d2es7a1 27 RVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD--WQVAVADLE------------------------QSEAIGDR 80 (119)
T ss_dssp -CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSC--CEEEEECHH------------------------HHHHHHHT
T ss_pred hCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCc--eEEEEEECC------------------------CCHHHHHh
Confidence 3346799999999999999999999999999986643 666666433 22789999
Q ss_pred cCcCccceEEEecCCCCCCCcccccc
Q 013684 148 FDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 148 ~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|+|.++||++++. +|+.+.+..
T Consensus 81 ~~V~~~Pt~~~~~----~G~~v~~~~ 102 (119)
T d2es7a1 81 FNVRRFPATLVFT----DGKLRGALS 102 (119)
T ss_dssp TTCCSSSEEEEES----CC----CEE
T ss_pred cCcCcceEEEEEE----cCeEEEEee
Confidence 9999999999995 888776643
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=1.3e-11 Score=99.92 Aligned_cols=67 Identities=19% Similarity=0.429 Sum_probs=55.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|.++|.|||+||++|+.+.|.+.++.+.++..+.++.++.|+.+.. ..++..|+
T Consensus 23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~ 78 (120)
T d1meka_ 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE------------------------SDLAQQYG 78 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC------------------------CSSHHHHT
T ss_pred cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccc------------------------hhHHHHhC
Confidence 468999999999999999999999999999977654466666655533 46678899
Q ss_pred cCccceEEEec
Q 013684 150 IEGIPCLVVLQ 160 (438)
Q Consensus 150 v~~~P~~~lvd 160 (438)
|.++||++++.
T Consensus 79 i~~~Pt~~~~~ 89 (120)
T d1meka_ 79 VRGYPTIKFFR 89 (120)
T ss_dssp CCSSSEEEEEE
T ss_pred CccCCeEEEEE
Confidence 99999999986
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.14 E-value=4.9e-11 Score=96.35 Aligned_cols=70 Identities=21% Similarity=0.410 Sum_probs=59.5
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.++.++|+||++||++|+.+.|.+.++++.+++. ++.++.|+++.. ..++++|+
T Consensus 26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~--~v~~~~vd~~~~------------------------~~l~~~~~ 79 (119)
T d2b5ea4 26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK--NITLAQIDCTEN------------------------QDLCMEHN 79 (119)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT--TCEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCeEEEEEECCccCcccccchhhhhhhhhhccc--ceeeeeeeccch------------------------HHHHHHhc
Confidence 4689999999999999999999999999998764 378887876643 78899999
Q ss_pred cCccceEEEecCCCCCCCcc
Q 013684 150 IEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~ 169 (438)
|.++|+++++. +|...
T Consensus 80 v~~~Pti~~f~----~g~~~ 95 (119)
T d2b5ea4 80 IPGFPSLKIFK----NSDVN 95 (119)
T ss_dssp CCSSSEEEEEE----TTCTT
T ss_pred cccCCeEEEEE----CCEEe
Confidence 99999999994 66544
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=9.6e-11 Score=99.83 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=89.7
Q ss_pred hhcCCCCCcc-C-CCCCceeecccc-CCCEEEEEEe-cCCChhhh-hhhHHHHHHHHHHHhhhhhcCCCCCCE-EEEEEe
Q 013684 212 LTNHDRGYLL-G-HPPDEKVPVSSL-VGKTVGLYFS-ARWCIPCE-KFMPKLLSIYQKIKQNLVEKGDALEDF-EVVFVS 285 (438)
Q Consensus 212 ~g~~~~~f~l-~-~~g~~~~~l~~~-~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~~~~~~~-~vv~is 285 (438)
+|+.+|+|++ + .+|+ .++++++ +||.++|+|| +.|+|.|. ...+.+.+.++.+.++ +. +|+.++
T Consensus 5 VGd~aP~f~l~~~~~~~-~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~---------g~~~i~~~s 74 (161)
T d1hd2a_ 5 VGDAIPAVEVFEGEPGN-KVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK---------GVQVVACLS 74 (161)
T ss_dssp TTCBCCCCEEECSSTTC-EEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT---------TCCEEEEEE
T ss_pred CCCcCCCeEEEecCCCc-EEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHc---------CCeEEEEEe
Confidence 7999999999 5 5578 9999985 8999999999 67999995 5888899888888865 44 466677
Q ss_pred cCCCHHHHHHHHhcCC-CcccccCCchhHHHHHhcCcC------c------eeeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFGTMP-WLALPFGDPTIKELTKYFDVQ------G------IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~~-~~~~p~~~d~~~~l~~~~~v~------~------~P~~~lid~~G~i~~~~ 340 (438)
+| +....+++..... -..+++..|.+.++++.||+. + .-..++|+.+|+|++..
T Consensus 75 ~~-~~~~~~~~~~~~~~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~ 141 (161)
T d1hd2a_ 75 VN-DAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALN 141 (161)
T ss_dssp SS-CHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEE
T ss_pred cC-chhhhhhhhhhcccccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEE
Confidence 76 4444555554443 246888999999999999972 1 23346666799998764
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.12 E-value=2.2e-11 Score=92.29 Aligned_cols=60 Identities=13% Similarity=0.258 Sum_probs=49.8
Q ss_pred EEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCcc
Q 013684 74 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI 153 (438)
Q Consensus 74 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~ 153 (438)
.+..|||+||++|+.+.|.|.++.+++.++ +.++.|++|.. .+++++|+|.++
T Consensus 4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~------------------------~~l~~~~~V~~~ 56 (85)
T d1nhoa_ 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVD------------------------REKAIEYGLMAV 56 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTC------------------------GGGGGGTCSSCS
T ss_pred EEEEEECCCCcchHHHHHHHhhhccccccc---ccccccccccc------------------------hhhHHhcCceEe
Confidence 456699999999999999999999998643 77887877654 567899999999
Q ss_pred ceEEEecC
Q 013684 154 PCLVVLQP 161 (438)
Q Consensus 154 P~~~lvd~ 161 (438)
||+++ +.
T Consensus 57 Pt~~~-~~ 63 (85)
T d1nhoa_ 57 PAIAI-NG 63 (85)
T ss_dssp SEEEE-TT
T ss_pred CEEEE-CC
Confidence 99765 54
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=5.3e-12 Score=103.86 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=60.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++|+|.|||+|||+|+.+.|.|.++.+++.+.. +.+..|+.| ...++++.|+
T Consensus 35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~--~~~a~Vd~d------------------------~~~~la~~~~ 88 (132)
T d2hfda1 35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT--WQVAIADLE------------------------QSEAIGDRFG 88 (132)
T ss_dssp SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSC--EEEEEECHH------------------------HHHHHHHHHT
T ss_pred CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCc--ceeEEEEec------------------------CCHHHHHhhc
Confidence 45799999999999999999999999999987654 666666433 2289999999
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|.++||++++. +|+.+.+.
T Consensus 89 V~~~PT~~~~~----~G~~v~~~ 107 (132)
T d2hfda1 89 VFRFPATLVFT----GGNYRGVL 107 (132)
T ss_dssp CCSCCEEEEEE----TTEEEEEE
T ss_pred cCcceeEEEEE----cCcEeeee
Confidence 99999999995 88877654
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.10 E-value=4.2e-11 Score=96.11 Aligned_cols=76 Identities=20% Similarity=0.447 Sum_probs=59.5
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++|||+|+.+.|.|.++.++++. .+.+++++... +......+.+.|+
T Consensus 25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~-----~v~~v~~~~~~------------------~~~~~~~~~~~~~ 81 (115)
T d1zmaa1 25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-----HIYFINSEEPS------------------QLNDLQAFRSRYG 81 (115)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-----CCEEEETTCGG------------------GHHHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh-----hhhhheeeccc------------------ccccccccccccc
Confidence 478999999999999999999999999988743 35566666332 2222367899999
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|.++||++++. +|+++.+.
T Consensus 82 V~~~PTli~~~----~gk~~~~~ 100 (115)
T d1zmaa1 82 IPTVPGFVHIT----DGQINVRC 100 (115)
T ss_dssp CCSSCEEEEEE----TTEEEEEC
T ss_pred cccccEEEEEE----CCEEEEEE
Confidence 99999999997 78766543
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.10 E-value=1.7e-10 Score=93.84 Aligned_cols=72 Identities=8% Similarity=0.077 Sum_probs=53.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHH-------HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLL-------SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~-------~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
+++.++|.|||+||++| ...|.+. .+++.+.+. ++.+..|+++.+
T Consensus 27 ~~~~~~V~FyapwC~~~-~~~~~~~~~~~~~~~~a~~~~~~---------~v~~a~Vd~~~~------------------ 78 (124)
T d1a8ya1 27 KYEVLALLYHEPPEDDK-ASQRQFEMEELILELAAQVLEDK---------GVGFGLVDSEKD------------------ 78 (124)
T ss_dssp HCSEEEEEEECCCCSSH-HHHHHHHHHHHHHHHHHHHTGGG---------TEEEEEEETTTS------------------
T ss_pred hCCeEEEEEECCCccch-hhhhHHHHHHHHHHHHHHHhccC---------CeEEEEEEeecc------------------
Confidence 46789999999999965 3444443 334444333 688888888765
Q ss_pred CCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+++++|+|+++||++++ ++|+.+...
T Consensus 79 -----~~l~~~~~I~~yPTi~~f-~~g~~~~y~ 105 (124)
T d1a8ya1 79 -----AAVAKKLGLTEEDSIYVF-KEDEVIEYD 105 (124)
T ss_dssp -----HHHHHTTTCCSTTCEEEE-ESSSEEECC
T ss_pred -----cchhhccccccCCcEEEe-ccCccEEee
Confidence 678999999999999999 677776543
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.09 E-value=5e-13 Score=115.03 Aligned_cols=77 Identities=14% Similarity=0.231 Sum_probs=58.9
Q ss_pred eccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC
Q 013684 230 PVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 309 (438)
Q Consensus 230 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~ 309 (438)
.++++++++++|.||++|||+|++..|.|.++++.++ ++.+..|+.|.+.
T Consensus 48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-----------~~~~~~i~~d~~~------------------- 97 (166)
T d1z6na1 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-----------NIELAIISKGRAE------------------- 97 (166)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-----------TEEEEEECHHHHH-------------------
T ss_pred HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-----------CCcEEEEECccCH-------------------
Confidence 4567788999999999999999999999999988765 4678888776543
Q ss_pred chhHHHHHhc---CcCceeeEEEECCCCcEEEcc
Q 013684 310 PTIKELTKYF---DVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 310 d~~~~l~~~~---~v~~~P~~~lid~~G~i~~~~ 340 (438)
+..+.| +...+|.++++|.++....+.
T Consensus 98 ----~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~ 127 (166)
T d1z6na1 98 ----DDLRQRLALERIAIPLVLVLDEEFNLLGRF 127 (166)
T ss_dssp ----HHTTTTTTCSSCCSSEEEEECTTCCEEEEE
T ss_pred ----HHHHHHHHhccccccceeecCccchhcccc
Confidence 333444 345677888888888777653
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.09 E-value=5.2e-10 Score=90.53 Aligned_cols=74 Identities=9% Similarity=0.080 Sum_probs=58.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+.+.+||.|||+||++|+. |.+.++++.+... ..++.+..|.++... .+.+.+
T Consensus 18 ~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~-------~~~v~ia~Vd~~~~~------------------~~~n~~ 70 (122)
T d2c0ga2 18 RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKA-------TKDLLIATVGVKDYG------------------ELENKA 70 (122)
T ss_dssp TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHH-------CSSEEEEEEEECSST------------------TCTTHH
T ss_pred cCCcEEEEEECCCCCcccC--HHHHHHHHHHHHh-------CCCeEEEeccccccc------------------cccCHH
Confidence 4589999999999999994 9999999998765 457888888875321 112478
Q ss_pred HHHhcCc--CceeeEEEECCCCc
Q 013684 315 LTKYFDV--QGIPCLVIIGPEGK 335 (438)
Q Consensus 315 l~~~~~v--~~~P~~~lid~~G~ 335 (438)
+++.|+| +++||++++..++.
T Consensus 71 l~~~~~i~~~~~PTi~~f~~g~~ 93 (122)
T d2c0ga2 71 LGDRYKVDDKNFPSIFLFKGNAD 93 (122)
T ss_dssp HHHHTTCCTTSCCEEEEESSSSS
T ss_pred HHHHhhcccCCCCcEEEEeCCcc
Confidence 9999998 57999999955443
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.08 E-value=1.1e-10 Score=90.35 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=53.3
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+..++|.+.++.|+++|||+|+.+.|.|.++++.. .++.+..|+.|.. .+++
T Consensus 10 ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~----~~i~~~~vd~~~~------------------------~~l~ 61 (96)
T d1hyua4 10 IRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLN----PRIKHTAIDGGTF------------------------QNEI 61 (96)
T ss_dssp HHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC----TTEEEEEEETTTC------------------------HHHH
T ss_pred HHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhC----CceEEEEEecccc------------------------hHHH
Confidence 34556788899999999999999999999988763 3488877766644 6888
Q ss_pred hhcCcCccceEEE
Q 013684 146 RKFDIEGIPCLVV 158 (438)
Q Consensus 146 ~~~~v~~~P~~~l 158 (438)
+.|+|.++||+++
T Consensus 62 ~~~~I~~vPt~~~ 74 (96)
T d1hyua4 62 TERNVMGVPAVFV 74 (96)
T ss_dssp HHTTCCSSSEEEE
T ss_pred hhcccccccEEEE
Confidence 9999999999755
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.06 E-value=3.1e-10 Score=96.25 Aligned_cols=113 Identities=15% Similarity=0.224 Sum_probs=74.4
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCc-cchhhHHHHHHHHHHHhcCC-CCEEEEEEecCC---CHHHHHHhHhcC--
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNG-SDFEVVFVSSDE---DLNAFNNYRACM-- 128 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~-~~~~iv~vs~D~---~~~~~~~~~~~~-- 128 (438)
+.|.+|+++++++++||++||+||.+||+ .|......+..+...+...+ ..+.+..++.+. ..+....+....
T Consensus 11 l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (169)
T d2b7ka1 11 LEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHP 90 (169)
T ss_dssp EEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCT
T ss_pred EEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhccccc
Confidence 99999999999999999999999999997 67777777777666665532 235666666543 333334443322
Q ss_pred CcccccCCChHHHHHHhh----------------hcCcCccceEEEecCCCCCCCccccc
Q 013684 129 PWLAVPYSDLETKKALNR----------------KFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 129 ~~~~~~~~d~~~~~~l~~----------------~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.|..... .......... .|.+.+.|+++|||+ +|+++.+.
T Consensus 91 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~---~G~vv~~~ 146 (169)
T d2b7ka1 91 SILGLTG-TFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDP---EGQFVDAL 146 (169)
T ss_dssp TCEEEEC-CHHHHHHHHHHTTC--------------CTTTCCCEEEECT---TSCEEEEE
T ss_pred ccccccc-chhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECC---CCeEEEEE
Confidence 2332222 2221122222 345677899999999 99999664
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.05 E-value=2.9e-11 Score=100.64 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=53.3
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.++.|+|.|||+||++|+.+.|.|.++++.+++.+ ..+.++.+|.+ ..++..|+
T Consensus 29 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~--~~v~~~~~d~~------------------------~~~~~~~~ 82 (140)
T d2b5ea1 29 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANAT--SDVLIAKLDHT------------------------ENDVRGVV 82 (140)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHC--SSCEEEEEEGG------------------------GCCCSSCC
T ss_pred CCCCEEEEEEeccCcccchhHHHHHHHHHHHhccc--cceEEEeeecc------------------------chhccccc
Confidence 36899999999999999999999999999998765 33444455533 34567899
Q ss_pred cCccceEEEecC
Q 013684 150 IEGIPCLVVLQP 161 (438)
Q Consensus 150 v~~~P~~~lvd~ 161 (438)
|.++|+++++..
T Consensus 83 v~~~Ptl~~f~~ 94 (140)
T d2b5ea1 83 IEGYPTIVLYPG 94 (140)
T ss_dssp CSSSSEEEEECC
T ss_pred cccCCeEEEEEC
Confidence 999999999973
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=99.02 E-value=3.2e-11 Score=96.81 Aligned_cols=68 Identities=22% Similarity=0.348 Sum_probs=49.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+|++||.||++||++|+++.|.+.++++.+.... ....+.+.....+ .
T Consensus 19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~-----~~~~~~~~~~~~~--------------------------~ 67 (116)
T d2djja1 19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSE-----FKDRVVIAKVDAT--------------------------A 67 (116)
T ss_dssp TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSS-----CTTSSEEEEEETT--------------------------T
T ss_pred CCCCEEEEEEecccccccccchHHHHHHHHHhccc-----ccceeEEEecccc--------------------------h
Confidence 46899999999999999999999999999997540 0001222222222 2
Q ss_pred HHHhcCcCceeeEEEECCCC
Q 013684 315 LTKYFDVQGIPCLVIIGPEG 334 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G 334 (438)
....++|.++||++++ ++|
T Consensus 68 ~~~~~~v~~~Pti~~f-~~g 86 (116)
T d2djja1 68 NDVPDEIQGFPTIKLY-PAG 86 (116)
T ss_dssp SCCSSCCSSSSEEEEE-CSS
T ss_pred hhhcccccCCCEEEEE-ECC
Confidence 2456899999999999 555
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.01 E-value=2.3e-10 Score=92.69 Aligned_cols=71 Identities=10% Similarity=0.133 Sum_probs=57.1
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+.+.+||.|||+||++|+. |.+.++++++++...++.+..|++++. +.....+++..|+
T Consensus 18 ~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~-------------------~~~~n~~l~~~~~ 76 (122)
T d2c0ga2 18 RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDY-------------------GELENKALGDRYK 76 (122)
T ss_dssp TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSS-------------------TTCTTHHHHHHTT
T ss_pred cCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEecccccc-------------------ccccCHHHHHHhh
Confidence 5689999999999999994 999999999887656788888876532 1111278999998
Q ss_pred c--CccceEEEecC
Q 013684 150 I--EGIPCLVVLQP 161 (438)
Q Consensus 150 v--~~~P~~~lvd~ 161 (438)
| .++||++++..
T Consensus 77 i~~~~~PTi~~f~~ 90 (122)
T d2c0ga2 77 VDDKNFPSIFLFKG 90 (122)
T ss_dssp CCTTSCCEEEEESS
T ss_pred cccCCCCcEEEEeC
Confidence 8 57999999985
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=8.4e-10 Score=92.19 Aligned_cols=78 Identities=13% Similarity=0.292 Sum_probs=58.3
Q ss_pred ccccCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 231 VSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 231 l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
.+..++|++||+|+++||++|+.+.... .++.+.+.+ ++.++.|+.+...
T Consensus 37 ~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~----------~fV~~~v~~~~~e----------------- 89 (147)
T d2dlxa1 37 CGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE----------HFIFWQVYHDSEE----------------- 89 (147)
T ss_dssp HHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH----------TEEEEEEESSSHH-----------------
T ss_pred HHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh----------heeEeeecccchh-----------------
Confidence 3445689999999999999999986643 344444443 4667777766432
Q ss_pred CCchhHHHHHhcCcCceeeEEEECC-CCcEEEc
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGP-EGKTVTK 339 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~-~G~i~~~ 339 (438)
...+.+.|+|.++|++++||+ +|+++..
T Consensus 90 ----~~~~~~~y~v~~~Pti~~idp~~ge~v~~ 118 (147)
T d2dlxa1 90 ----GQRYIQFYKLGDFPYVSILDPRTGQKLVE 118 (147)
T ss_dssp ----HHHHHHHHTCCSSSEEEEECTTTCCCCEE
T ss_pred ----hhhhhhheecCceeEEEEEeCCCCeEecc
Confidence 467899999999999999997 5777654
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=7e-10 Score=91.37 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=54.0
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
.+.-.||+|+|+|||+||++|+.+.|.+.+..+..+.. .++.++.|+.+... .+.
T Consensus 20 ~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~-~~fv~v~vd~~~~~------------------------~~~ 74 (135)
T d1sena_ 20 EAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS-HNFVMVNLEDEEEP------------------------KDE 74 (135)
T ss_dssp HHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH-TTSEEEEEEGGGSC------------------------SCG
T ss_pred HHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhc-CCcEEEeCCCCcCH------------------------HHH
Confidence 34446999999999999999999999987765543332 34665555443221 111
Q ss_pred h-hcCcCccceEEEecCCCCCCCcccc
Q 013684 146 R-KFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 146 ~-~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
. .+....+|+++++++ +|+++..
T Consensus 75 ~~~~~~~~~Pt~~~~d~---~G~~~~~ 98 (135)
T d1sena_ 75 DFSPDGGYIPRILFLDP---SGKVHPE 98 (135)
T ss_dssp GGCTTCSCSSEEEEECT---TSCBCTT
T ss_pred HHHhhcccceeEEEECC---CCeEEEE
Confidence 1 234456899999999 9988754
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=98.87 E-value=3e-10 Score=90.96 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=48.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|++||+|||+||++|+.+.|.|.++++.+..... ...+.+..++. ..+...++
T Consensus 19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~-~~~~~~~~~~~------------------------~~~~~~~~ 73 (116)
T d2djja1 19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEF-KDRVVIAKVDA------------------------TANDVPDE 73 (116)
T ss_dssp TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSC-TTSSEEEEEET------------------------TTSCCSSC
T ss_pred CCCCEEEEEEecccccccccchHHHHHHHHHhcccc-cceeEEEeccc------------------------chhhhccc
Confidence 468999999999999999999999999999987641 11111221111 12345689
Q ss_pred cCccceEEEec
Q 013684 150 IEGIPCLVVLQ 160 (438)
Q Consensus 150 v~~~P~~~lvd 160 (438)
|.++||++++.
T Consensus 74 v~~~Pti~~f~ 84 (116)
T d2djja1 74 IQGFPTIKLYP 84 (116)
T ss_dssp CSSSSEEEEEC
T ss_pred ccCCCEEEEEE
Confidence 99999999996
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=98.84 E-value=5.4e-09 Score=88.76 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=91.9
Q ss_pred hhhcCCCCCcc---CCC--CCceeeccc-cCCCEEEEEEe-cCCChhhh-hhhHHHHHHHHHHHhhhhhcCCCCCCEEEE
Q 013684 211 LLTNHDRGYLL---GHP--PDEKVPVSS-LVGKTVGLYFS-ARWCIPCE-KFMPKLLSIYQKIKQNLVEKGDALEDFEVV 282 (438)
Q Consensus 211 ~~g~~~~~f~l---~~~--g~~~~~l~~-~~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv 282 (438)
.+|+.+|+|+| +.+ ++ ++++++ ++||.|+|+|| ..|+|.|. +..+......+.++.+ ...+|+
T Consensus 5 ~vGd~~Pdf~l~~~~~~~~~~-~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~--------g~~~v~ 75 (162)
T d1tp9a1 5 AVGDVLPDGKLAYFDEQDQLQ-EVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK--------GVTEIL 75 (162)
T ss_dssp CTTCBCCCCEEEEECTTSCEE-EEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT--------TCCCEE
T ss_pred CCCCCCCCeEEEeecCCCCce-EEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHc--------CCccee
Confidence 37999999997 223 34 789987 59999999999 68999996 5777777777877765 245788
Q ss_pred EEecCCCHHHHHHHHhcCC-CcccccCCchhHHHHHhcCcC-----------ceeeEEEECCCCcEEEcc
Q 013684 283 FVSTDRDQTSFESYFGTMP-WLALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 283 ~is~d~~~~~~~~~~~~~~-~~~~p~~~d~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~~ 340 (438)
.||+| +....+++....+ ...+++..|...++.++||+. ....++||| +|+|++..
T Consensus 76 ~isvd-~~~~~~~~~~~~~~~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~ 143 (162)
T d1tp9a1 76 CISVN-DPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAAN 143 (162)
T ss_dssp EEESS-CHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEE
T ss_pred eeecc-chhhhhhhhhhcccccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEE
Confidence 99997 5667777777665 356888899999999999973 124678898 89998863
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=98.83 E-value=6.8e-09 Score=88.22 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=87.7
Q ss_pred hhhcCCCCCcc-CCCCC--ceeecccc-CCCEEEEEEe-cCCChhhhhhhHHHHHHHHH-HHhhhhhcCCCCCCEEEEEE
Q 013684 211 LLTNHDRGYLL-GHPPD--EKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQK-IKQNLVEKGDALEDFEVVFV 284 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~--~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~-~~~~~~~~~~~~~~~~vv~i 284 (438)
+.|+.+|+|++ ...|. +.++++++ +||.|+|+|+ +.+.|.|..+...+...+.. +..+ ..-.++.+
T Consensus 2 ~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~--------~~~~vv~~ 73 (163)
T d1nm3a2 2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY--------GVDDILVV 73 (163)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT--------TCCEEEEE
T ss_pred CCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhh--------cccceeee
Confidence 57999999999 55553 16889995 9999999999 68999999987765554433 3332 12245555
Q ss_pred ecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCc-----------CceeeEEEECCCCcEEEcc
Q 013684 285 STDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV-----------QGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 285 s~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v-----------~~~P~~~lid~~G~i~~~~ 340 (438)
+++ +....+++.+.++-..+++..|....+++.||+ .....++|+| +|+|++..
T Consensus 74 ~s~-d~~~~~a~~~~~~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~ 138 (163)
T d1nm3a2 74 SVN-DTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMF 138 (163)
T ss_dssp ESS-CHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEE
T ss_pred ecC-CHHHHHHHhhhhccCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEE
Confidence 555 555566666666667899999999999999987 2445789998 99998763
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.82 E-value=1.4e-09 Score=92.87 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=56.6
Q ss_pred eccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHH
Q 013684 65 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 144 (438)
Q Consensus 65 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 144 (438)
.+.+++++++++.||++|||+|+.++|.|.+++++++ ++.+..|+.|.+. +.
T Consensus 48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~----~~~~~~i~~d~~~------------------------~~ 99 (166)
T d1z6na1 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP----NIELAIISKGRAE------------------------DD 99 (166)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT----TEEEEEECHHHHH------------------------HH
T ss_pred HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC----CCcEEEEECccCH------------------------HH
Confidence 4677889999999999999999999999999988863 4777777766443 33
Q ss_pred hhhc---CcCccceEEEecCCCCCCCcccc
Q 013684 145 NRKF---DIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 145 ~~~~---~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
.+.| +...+|.+++.|. ++.....
T Consensus 100 ~~~~~~~~~~~~p~~~~~d~---~~~~~~~ 126 (166)
T d1z6na1 100 LRQRLALERIAIPLVLVLDE---EFNLLGR 126 (166)
T ss_dssp TTTTTTCSSCCSSEEEEECT---TCCEEEE
T ss_pred HHHHHHhccccccceeecCc---cchhccc
Confidence 3344 3346777777776 6655433
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.78 E-value=3.1e-09 Score=86.04 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=49.7
Q ss_pred CCCEEEEEEeccCCccch------hhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHH
Q 013684 70 EGKVTALYFSANWYPPCG------NFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 143 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~------~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 143 (438)
+++.++|.|||+||++|+ .+.+.+..+++.+.+.+ +.+..|+.+.. ..
T Consensus 27 ~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~--v~~a~Vd~~~~------------------------~~ 80 (124)
T d1a8ya1 27 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKG--VGFGLVDSEKD------------------------AA 80 (124)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGT--EEEEEEETTTS------------------------HH
T ss_pred hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCC--eEEEEEEeecc------------------------cc
Confidence 467899999999999753 23333444444444443 77777766544 78
Q ss_pred HhhhcCcCccceEEEecCCCCCCCcc
Q 013684 144 LNRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 144 l~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
+++.|+|.++||++++. +|+.+
T Consensus 81 l~~~~~I~~yPTi~~f~----~g~~~ 102 (124)
T d1a8ya1 81 VAKKLGLTEEDSIYVFK----EDEVI 102 (124)
T ss_dssp HHHTTTCCSTTCEEEEE----SSSEE
T ss_pred hhhccccccCCcEEEec----cCccE
Confidence 99999999999999997 56555
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=1.8e-08 Score=83.95 Aligned_cols=77 Identities=13% Similarity=0.202 Sum_probs=56.8
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHH
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 143 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 143 (438)
+.-++|++||+|+++||++|+.+.... .++.+.+.+ ++.++.|+.+.... ..
T Consensus 38 Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~---~fV~~~v~~~~~e~----------------------~~ 92 (147)
T d2dlxa1 38 GQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE---HFIFWQVYHDSEEG----------------------QR 92 (147)
T ss_dssp HHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH---TEEEEEEESSSHHH----------------------HH
T ss_pred HHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh---heeEeeecccchhh----------------------hh
Confidence 344689999999999999999986644 334444443 37777777664322 67
Q ss_pred HhhhcCcCccceEEEecCCCCCCCccc
Q 013684 144 LNRKFDIEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 144 l~~~~~v~~~P~~~lvd~~~~~G~v~~ 170 (438)
+++.|++.++|++++||+ ..|+++.
T Consensus 93 ~~~~y~v~~~Pti~~idp--~~ge~v~ 117 (147)
T d2dlxa1 93 YIQFYKLGDFPYVSILDP--RTGQKLV 117 (147)
T ss_dssp HHHHHTCCSSSEEEEECT--TTCCCCE
T ss_pred hhhheecCceeEEEEEeC--CCCeEec
Confidence 899999999999999997 2466653
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=3.1e-09 Score=90.23 Aligned_cols=121 Identities=16% Similarity=0.146 Sum_probs=84.9
Q ss_pred HhhccchhHHHHHhhccccc-CCCCCEEecccc-CCCEEEEEEe-ccCCccc-hhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 38 LIMSLSQWYVQQLRRRMTST-KEIGEEVKVSDL-EGKVTALYFS-ANWYPPC-GNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~-~~~g~~v~l~~~-~gk~vll~F~-a~wC~~C-~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
.+|+.+|+|+ +. +.+|+.++++++ +||+|+|+|| +.|+|.| .++.+.+.+.++.+++.| ..+|+.++
T Consensus 4 kVGd~aP~f~--------l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g-~~~i~~~s 74 (161)
T d1hd2a_ 4 KVGDAIPAVE--------VFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG-VQVVACLS 74 (161)
T ss_dssp CTTCBCCCCE--------EECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT-CCEEEEEE
T ss_pred CCCCcCCCeE--------EEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcC-CeEEEEEe
Confidence 4899999999 65 566899999996 8999999999 8999999 568889999999999986 23566677
Q ss_pred cCCCHHHHHHhHhcCCcc-ccc-CCChHHHHHHhhhcCcCc------------cceEEEecCCCCCCCcccccc
Q 013684 114 SDEDLNAFNNYRACMPWL-AVP-YSDLETKKALNRKFDIEG------------IPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~~~~~~~~~~~~~~-~~~-~~d~~~~~~l~~~~~v~~------------~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+|. ......+....... .++ .+|.. .++++.||+.. .-.+++|+. +|.|.+...
T Consensus 75 ~~~-~~~~~~~~~~~~~~~~~~llsD~~--~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~---~G~I~~~~v 142 (161)
T d1hd2a_ 75 VND-AFVTGEWGRAHKAEGKVRLLADPT--GAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ---DGIVKALNV 142 (161)
T ss_dssp SSC-HHHHHHHHHHTTCTTTCEEEECTT--CHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE---TTEEEEEEE
T ss_pred cCc-hhhhhhhhhhcccccccccccCCc--ceeeeeeeeeeccccCccccccEEeEEEEEEC---CCEEEEEEE
Confidence 764 33344444433211 122 22443 78888888631 234577777 998876543
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.69 E-value=4.6e-09 Score=93.51 Aligned_cols=70 Identities=10% Similarity=0.142 Sum_probs=58.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++.+|+|.||++||++|+.+.|.|.+++.+|. ++.++.|+.+.. .
T Consensus 119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~-----------~vkF~ki~~~~~------------------------~ 163 (217)
T d2trcp_ 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-----------MVKFCKIRASNT------------------------G 163 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-----------TSEEEEEEHHHH------------------------T
T ss_pred CCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc-----------cceEEEEccccc------------------------h
Confidence 45689999999999999999999999998875 467888766421 1
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+...|++.++||++++ ++|+++.+.
T Consensus 164 ~~~~~~i~~lPtl~~y-k~G~~v~~~ 188 (217)
T d2trcp_ 164 AGDRFSSDVLPTLLVY-KGGELISNF 188 (217)
T ss_dssp CSTTSCGGGCSEEEEE-ETTEEEEEE
T ss_pred hHHhCCCCCCCeEEEE-ECCEEEEEE
Confidence 3467999999999999 999999874
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.58 E-value=2.3e-08 Score=77.50 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=46.9
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
.-++++.|+++||++|....+.|.++..+|. ++++.++.+. +.++
T Consensus 15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~------------~~~v~vd~~~-----------------------~~~l 59 (100)
T d1wjka_ 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI------------LQEVDITLPE-----------------------NSTW 59 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSSSSE------------EEEEETTSST-----------------------THHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHhhhhcc------------eEEEeccccc-----------------------CHHH
Confidence 4568888999999999999998888765443 3444443333 3678
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.++|++. +|+++ + +|+.+..
T Consensus 60 ~~~y~~~-VPvl~-i--dg~~~~~ 79 (100)
T d1wjka_ 60 YERYKFD-IPVFH-L--NGQFLMM 79 (100)
T ss_dssp HHHSSSS-CSEEE-E--SSSEEEE
T ss_pred HHHhccc-CCcee-e--cCceEEe
Confidence 9999987 99765 4 5666544
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=98.52 E-value=5.1e-08 Score=82.56 Aligned_cols=119 Identities=16% Similarity=0.230 Sum_probs=85.9
Q ss_pred HhhccchhHHHHHhhccccc----CCCCCEEecccc-CCCEEEEEEe-ccCCccch-hhHHHHHHHHHHHhcCCCCEEEE
Q 013684 38 LIMSLSQWYVQQLRRRMTST----KEIGEEVKVSDL-EGKVTALYFS-ANWYPPCG-NFTGVLVDVYEELRNNGSDFEVV 110 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~----~~~g~~v~l~~~-~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~iv 110 (438)
.+|+.+|+|+ +. +..+++++++++ +||+|+|+|| ..|+|.|. ++.+......+.++..| ..+++
T Consensus 5 ~vGd~~Pdf~--------l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g-~~~v~ 75 (162)
T d1tp9a1 5 AVGDVLPDGK--------LAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG-VTEIL 75 (162)
T ss_dssp CTTCBCCCCE--------EEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT-CCCEE
T ss_pred CCCCCCCCeE--------EEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcC-Cccee
Confidence 5899999999 63 455678999885 9999999988 99999995 67788888888888876 45788
Q ss_pred EEecCCCHHHHHHhHhcCCc-ccccC-CChHHHHHHhhhcCcC-----------ccceEEEecCCCCCCCccccc
Q 013684 111 FVSSDEDLNAFNNYRACMPW-LAVPY-SDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 111 ~vs~D~~~~~~~~~~~~~~~-~~~~~-~d~~~~~~l~~~~~v~-----------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.||+| +......+....+. ..+++ +|.. .++.+.|++. ....++||| ||.|.+..
T Consensus 76 ~isvd-~~~~~~~~~~~~~~~~~~~~lsD~~--~~~~~~~g~~~~~~~~g~g~~~~R~tfiId----dg~I~~~~ 143 (162)
T d1tp9a1 76 CISVN-DPFVMKAWAKSYPENKHVKFLADGS--ATYTHALGLELDLQEKGLGTRSRRFALLVD----DLKVKAAN 143 (162)
T ss_dssp EEESS-CHHHHHHHHHTCTTCSSEEEEECTT--SHHHHHTTCEEEETTTTSEEEECCEEEEEE----TTEEEEEE
T ss_pred eeecc-chhhhhhhhhhcccccccccccchh--hHHHhhhhhccccccccCCcEEEEEEEEEE----CCEEEEEE
Confidence 88887 44555666665442 11222 2333 6788888763 235678887 88877653
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.38 E-value=4.5e-07 Score=72.64 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=50.0
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec---CCCHHHHHHHHhcCCCcccccCCch
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST---DRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~---d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
+++++||.|+++||..|.. |.+.++++.+.+. .+.-+..|.+ |.+.
T Consensus 20 ~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~--------~~~~~~~V~~~~vd~~~--------------------- 68 (122)
T d1g7ea_ 20 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASS--------DDLLVAEVGISDYGDKL--------------------- 68 (122)
T ss_dssp GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGC--------SSEEEEEEESCCTTSCH---------------------
T ss_pred hCCeEEEEEecCCcCcccC--HHHHHHHHHHHHH--------HHHhhhccceeeccccc---------------------
Confidence 4689999999999988864 8899999998764 2333333433 4333
Q ss_pred hHHHHHhcC--cCceeeEEEECCCCc
Q 013684 312 IKELTKYFD--VQGIPCLVIIGPEGK 335 (438)
Q Consensus 312 ~~~l~~~~~--v~~~P~~~lid~~G~ 335 (438)
+..++..|+ |.++||++++ ++|+
T Consensus 69 n~~l~~~~~~~I~~yPTi~~f-~~G~ 93 (122)
T d1g7ea_ 69 NMELSEKYKLDKESYPVFYLF-RDGD 93 (122)
T ss_dssp HHHHHHHHTCSSSSCEEEEEE-ESSC
T ss_pred cHHHHHhhcccccCCCeEEEE-ecCc
Confidence 477888765 7799999999 5664
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.26 E-value=1.3e-07 Score=83.82 Aligned_cols=69 Identities=10% Similarity=0.136 Sum_probs=55.4
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+.+|+|.||++||++|+.+.|.|.+++.++. ++.++-|+.+. ..+...|++
T Consensus 120 ~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~----~vkF~ki~~~~-------------------------~~~~~~~~i 170 (217)
T d2trcp_ 120 VTTIVVNIYEDGVRGCDALNSSLECLAAEYP----MVKFCKIRASN-------------------------TGAGDRFSS 170 (217)
T ss_dssp TCEEEEEEECTTSTTHHHHHHHHHHHHTTCT----TSEEEEEEHHH-------------------------HTCSTTSCG
T ss_pred CCeEEEEEEcCCCCChhhhhhhHHHHhhhcc----cceEEEEcccc-------------------------chhHHhCCC
Confidence 4689999999999999999999999998873 46677665441 123467999
Q ss_pred CccceEEEecCCCCCCCccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.++||++++. +|.++.+-
T Consensus 171 ~~lPtl~~yk----~G~~v~~~ 188 (217)
T d2trcp_ 171 DVLPTLLVYK----GGELISNF 188 (217)
T ss_dssp GGCSEEEEEE----TTEEEEEE
T ss_pred CCCCeEEEEE----CCEEEEEE
Confidence 9999999996 89887654
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=98.20 E-value=3.8e-07 Score=77.07 Aligned_cols=120 Identities=12% Similarity=0.147 Sum_probs=75.1
Q ss_pred HhhccchhHHHHHhhcccccCCCC---CEEecccc-CCCEEEEEEe-ccCCccchhhHHHHHHHH-HHHhcCCCCEEEEE
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIG---EEVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVY-EELRNNGSDFEVVF 111 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g---~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~-~~~~~~~~~~~iv~ 111 (438)
+.|+.+|+|+ +....| +.++++++ +||+|+|+|+ +.+.|.|..+...+.... +.+...+.+ .++.
T Consensus 2 ~~Gd~~Pdft--------l~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~-~vv~ 72 (163)
T d1nm3a2 2 MEGKKVPQVT--------FRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVD-DILV 72 (163)
T ss_dssp CTTSBCCCCE--------EEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCC-EEEE
T ss_pred CCCCCCCCeE--------EEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhccc-ceee
Confidence 5799999999 776666 46899996 9999888888 899999999876655543 344444422 3444
Q ss_pred EecCCCHHHHHHhHhcCCcccccC-CChHHHHHHhhhcCc-----------CccceEEEecCCCCCCCcccccc
Q 013684 112 VSSDEDLNAFNNYRACMPWLAVPY-SDLETKKALNRKFDI-----------EGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 112 vs~D~~~~~~~~~~~~~~~~~~~~-~d~~~~~~l~~~~~v-----------~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++.+ +......+.+.+.-..+++ +|.. ..+.+.|++ .....++||| ||.|.....
T Consensus 73 ~~s~-d~~~~~a~~~~~~~~~~~llsD~~--~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid----dG~I~~~~v 139 (163)
T d1nm3a2 73 VSVN-DTFVMNAWKEDEKSENISFIPDGN--GEFTEGMGMLVGKEDLGFGKRSWRYSMLVK----NGVVEKMFI 139 (163)
T ss_dssp EESS-CHHHHHHHHHHTTCTTSEEEECTT--SHHHHHTTCEEECTTTTCCEEECCEEEEEE----TTEEEEEEE
T ss_pred eecC-CHHHHHHHhhhhccCceeeeccCC--hHHHHHhhhhccccccccccccceEEEEEe----CCEEEEEEE
Confidence 4444 3333444444332222221 1332 566666665 2456788887 888765543
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.18 E-value=1.1e-06 Score=70.24 Aligned_cols=82 Identities=13% Similarity=0.081 Sum_probs=54.5
Q ss_pred CCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCC
Q 013684 58 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD 137 (438)
Q Consensus 58 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d 137 (438)
.++.+++.----+++.+||.|+++||..|.. |.+.++++++.+.. +..+-.|.+..- +
T Consensus 8 ~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~-~~~~~~V~~~~v-------------------d 65 (122)
T d1g7ea_ 8 PLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSD-DLLVAEVGISDY-------------------G 65 (122)
T ss_dssp SCSHHHHHHHGGGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCS-SEEEEEEESCCT-------------------T
T ss_pred ECCHHhHHHHHhhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHH-HHhhhccceeec-------------------c
Confidence 3444444322235789999999999988864 88999999998864 443333443210 1
Q ss_pred hHHHHHHhhhc--CcCccceEEEecC
Q 013684 138 LETKKALNRKF--DIEGIPCLVVLQP 161 (438)
Q Consensus 138 ~~~~~~l~~~~--~v~~~P~~~lvd~ 161 (438)
.+....++..| +|.++||++++..
T Consensus 66 ~~~n~~l~~~~~~~I~~yPTi~~f~~ 91 (122)
T d1g7ea_ 66 DKLNMELSEKYKLDKESYPVFYLFRD 91 (122)
T ss_dssp SCHHHHHHHHHTCSSSSCEEEEEEES
T ss_pred ccccHHHHHhhcccccCCCeEEEEec
Confidence 22227788776 5789999999984
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.05 E-value=1.3e-06 Score=67.23 Aligned_cols=58 Identities=17% Similarity=0.237 Sum_probs=42.9
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
.-++++.|+++||++|+...+.|.++..+ +....+.+|.+.+ .++.+.|++
T Consensus 15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~-------~~~~~v~vd~~~~----------------------~~l~~~y~~ 65 (100)
T d1wjka_ 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDR-------FILQEVDITLPEN----------------------STWYERYKF 65 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSSS-------SEEEEEETTSSTT----------------------HHHHHHSSS
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHhhhh-------cceEEEecccccC----------------------HHHHHHhcc
Confidence 45789999999999999999888876544 3334455554322 788999998
Q ss_pred CccceEEE
Q 013684 151 EGIPCLVV 158 (438)
Q Consensus 151 ~~~P~~~l 158 (438)
+ +|++++
T Consensus 66 ~-VPvl~i 72 (100)
T d1wjka_ 66 D-IPVFHL 72 (100)
T ss_dssp S-CSEEEE
T ss_pred c-CCceee
Confidence 7 997654
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=2.1e-05 Score=66.29 Aligned_cols=100 Identities=9% Similarity=0.087 Sum_probs=63.3
Q ss_pred eeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC---CCH-------------HH
Q 013684 229 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD---RDQ-------------TS 292 (438)
Q Consensus 229 ~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d---~~~-------------~~ 292 (438)
+....-..+.+++.|+.+.||+|+++.+.+.++.++. .+.++++.+. .+. ..
T Consensus 29 i~~G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~------------~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~ 96 (169)
T d1v58a1 29 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDSG------------KVQLRTLLVGVIKPESPATAAAILASKDPAK 96 (169)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHTT------------SEEEEEEECCCSSTTHHHHHHHHHHSSSHHH
T ss_pred ceeCCCCCCEEEEEEECCCCcchHHHHHHHHHHHhcc------------ceeEEEEecccCCcchHHHHHHHHhhhCHHH
Confidence 3334444578999999999999999999988776432 4777777653 111 11
Q ss_pred HHHHHhcCC-C--cccc-cC-------CchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 293 FESYFGTMP-W--LALP-FG-------DPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 293 ~~~~~~~~~-~--~~~p-~~-------~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
...+..... . ...+ .. .+.+..+++.+||+++|++++.|++|++....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~ 155 (169)
T d1v58a1 97 TWQQYEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAV 155 (169)
T ss_dssp HHHHHHHTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEE
T ss_pred HHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEec
Confidence 111111111 0 1111 11 12456788899999999999999999876544
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.00 E-value=2.8e-05 Score=64.58 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=56.1
Q ss_pred ccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC--C-CHH----------------
Q 013684 231 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--R-DQT---------------- 291 (438)
Q Consensus 231 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d--~-~~~---------------- 291 (438)
+..-.+|.+++.|+.+.||+|+++.|.+.++.+ . ++.++.+..- . ...
T Consensus 21 ~g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~----~---------~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~ 87 (156)
T d1eeja1 21 YKAPQEKHVITVFTDITCGYCHKLHEQMADYNA----L---------GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNK 87 (156)
T ss_dssp ECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH----T---------TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHH
T ss_pred ecCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhc----c---------CceEEEEeccccccchhhHHHHHHHHHhhhhhh
Confidence 333346889999999999999999999887743 2 3555555431 1 111
Q ss_pred HHHHHHhcCC--CcccccCCchhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 292 SFESYFGTMP--WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 292 ~~~~~~~~~~--~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
.+........ .....-....+..+++.+||+|+|++|+ .+|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~la~~lgv~GTPt~~~--~nG~~v 133 (156)
T d1eeja1 88 AFDDVMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVL--SNGTLV 133 (156)
T ss_dssp HHHHHHTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEEC--TTSCEE
T ss_pred hhHHHHhccccchhhhcchHHHHHHHHHHcCCcCCCEEEE--eCCeEe
Confidence 1111111111 1111112335678999999999999665 468776
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.74 E-value=8.6e-05 Score=62.52 Aligned_cols=102 Identities=15% Similarity=0.263 Sum_probs=78.0
Q ss_pred eeeccc-cCCCEEEEEEe-cCCChhhhh-hhHHHHHHHHHH-HhhhhhcCCCCCCE-EEEEEecCCCHHHHHHHHhcCCC
Q 013684 228 KVPVSS-LVGKTVGLYFS-ARWCIPCEK-FMPKLLSIYQKI-KQNLVEKGDALEDF-EVVFVSTDRDQTSFESYFGTMPW 302 (438)
Q Consensus 228 ~~~l~~-~~gk~vll~F~-a~wC~~C~~-~~p~l~~l~~~~-~~~~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~ 302 (438)
.+++++ ++||.|+|++. +...|.|.. .+|.+.+.+++| +.+ ++ +|+.|++| +.-.+++|.+.++.
T Consensus 33 ~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~---------gvd~I~~iSvn-D~fv~~aW~~~~~~ 102 (179)
T d1xiya1 33 SIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKEN---------NFDDIYCITNN-DIYVLKSWFKSMDI 102 (179)
T ss_dssp EEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTS---------CCSEEEEEESS-CHHHHHHHHHHTTC
T ss_pred EeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhc---------CCceEEEEecC-CHHHHHHHHhhcCc
Confidence 456655 48888887776 678999966 799999999998 444 34 69999998 66777777777664
Q ss_pred cccccCCchhHHHHHhcCcC-----------ceeeEEEECCCCcEEEcc
Q 013684 303 LALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 303 ~~~p~~~d~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~~ 340 (438)
-.+.++.|.+.++.+.||+. .....++++ +|+|.+..
T Consensus 103 ~~I~~lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~ 150 (179)
T d1xiya1 103 KKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMF 150 (179)
T ss_dssp CSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEE
T ss_pred ceEEEeeCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEE
Confidence 45688999999999999872 234578886 89988754
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.69 E-value=0.00051 Score=57.12 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=41.4
Q ss_pred eeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 229 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 229 ~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
+.+.+-.+++.++.|+...||+|.++.+.+.++.+++.+. ..+.++.+..
T Consensus 17 ~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 66 (172)
T d1z6ma1 17 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKS--------GKVERIIKLF 66 (172)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHT--------TSEEEEEEEC
T ss_pred CeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccc--------cceeeeeccc
Confidence 5566667788999999999999999999999999998865 3577776665
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.67 E-value=0.00019 Score=58.88 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=53.9
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec--CC-CHHHHH---HHH--------
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST--DR-DQTSFE---SYF-------- 297 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~--d~-~~~~~~---~~~-------- 297 (438)
..-.+|.+++.|+-+.||+|+++.+.+.++.+. +..++.+.. .. ...... ...
T Consensus 22 g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~-------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a 88 (150)
T d1t3ba1 22 PAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDL-------------GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFA 88 (150)
T ss_dssp CCTTCSEEEEEEECTTCHHHHHHHTTHHHHHHT-------------TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHH
T ss_pred CCCCCCEEEEEEECCCCHHHHHHhHHHHHHhcc-------------CceEEEEEecccccchhHHHHHHHHHHhhhHHHh
Confidence 333467899999999999999999998877542 234444433 21 111110 000
Q ss_pred ----hcCCCc---ccccCCchhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 298 ----GTMPWL---ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 298 ----~~~~~~---~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
...... ...-....+..+++.+||+|+||+++. +|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~i~~~~~la~~lGv~GTPt~~~~--nG~~i 133 (150)
T d1t3ba1 89 LNEAEKGNLPKEVKTPNIVKKHYELGIQFGVRGTPSIVTS--TGELI 133 (150)
T ss_dssp HHHHHTTCCCSSCCCSSHHHHHHHHHHHHTCCSSCEEECT--TSCCC
T ss_pred hHhHhhhccccchhhhhHHHHHHHHHHhcCcCCCCEEEEc--CCcEe
Confidence 011101 111122356788999999999997764 67654
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=0.00036 Score=59.05 Aligned_cols=47 Identities=19% Similarity=0.197 Sum_probs=33.3
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
..++++++.|+...||+|+.+.+.+..+.+..+.. ..++.++.....
T Consensus 16 ~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~ 62 (188)
T d1fvka_ 16 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKL-------PEGVKMTKYHVN 62 (188)
T ss_dssp CTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTS-------CTTCCEEEEECS
T ss_pred CCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhcc-------CCceEEEEEecC
Confidence 35678899999999999999998876655544322 234666666653
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=97.28 E-value=0.0007 Score=56.62 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=29.5
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhh
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQN 268 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~ 268 (438)
.++++++.|+...||+|+.+.+.+.++.+++.+.
T Consensus 17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~ 50 (181)
T d1beda_ 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG 50 (181)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT
T ss_pred CCCCEEEEEECCCCccchhhhhhhhhHhhhcccc
Confidence 4688899999999999999999999988887643
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.0011 Score=55.34 Aligned_cols=98 Identities=9% Similarity=0.094 Sum_probs=61.8
Q ss_pred EeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC----------------CCHHHHHHhHhc
Q 013684 64 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD----------------EDLNAFNNYRAC 127 (438)
Q Consensus 64 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D----------------~~~~~~~~~~~~ 127 (438)
+..-.-..+.+++.|+-+-||+|+++.+.+.++.++ + .+.++++.+. .++..+.++...
T Consensus 29 i~~G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~----~-~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~ 103 (169)
T d1v58a1 29 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS----G-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA 103 (169)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT----T-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred ceeCCCCCCEEEEEEECCCCcchHHHHHHHHHHHhc----c-ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHH
Confidence 344444567999999999999999999998876643 2 4778877752 122222222221
Q ss_pred C----CcccccCCCh------HHHHHHhhhcCcCccceEEEecCCCCCCCcc
Q 013684 128 M----PWLAVPYSDL------ETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 128 ~----~~~~~~~~d~------~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
. +.......+. +.+..+++.+||.++|++++.|. +|.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~---~g~~~ 152 (169)
T d1v58a1 104 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSK---ENTLQ 152 (169)
T ss_dssp TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEET---TTEEE
T ss_pred hhhcccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECC---CCCEE
Confidence 1 1111111111 12456788899999999999998 87653
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.00036 Score=57.58 Aligned_cols=95 Identities=17% Similarity=0.230 Sum_probs=56.8
Q ss_pred EeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec--C-CCHH----------------HHHHh
Q 013684 64 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS--D-EDLN----------------AFNNY 124 (438)
Q Consensus 64 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~--D-~~~~----------------~~~~~ 124 (438)
+.+..-.+|.+++.|+-.-||+|+++.|.+.++.+ .+ +.++++.. . .... .+...
T Consensus 19 iv~g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~----~~--~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 92 (156)
T d1eeja1 19 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNA----LG--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDV 92 (156)
T ss_dssp EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHH
T ss_pred eeecCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhc----cC--ceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHH
Confidence 34444467999999999999999999999988753 22 55555543 1 1111 11111
Q ss_pred HhcCCcccccC-CChHHHHHHhhhcCcCccceEEEecCCCCCCCcc
Q 013684 125 RACMPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 125 ~~~~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
........... .....+..+++.+||+++|++++. ||+++
T Consensus 93 ~~~~~~~~~~~~~~i~~~~~la~~lgv~GTPt~~~~-----nG~~v 133 (156)
T d1eeja1 93 MAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLS-----NGTLV 133 (156)
T ss_dssp HTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEECT-----TSCEE
T ss_pred HhccccchhhhcchHHHHHHHHHHcCCcCCCEEEEe-----CCeEe
Confidence 11111111111 123455788999999999996653 56554
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.04 E-value=0.001 Score=54.39 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=52.6
Q ss_pred eccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec--CC-CHHHHHHhH---------------h
Q 013684 65 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS--DE-DLNAFNNYR---------------A 126 (438)
Q Consensus 65 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~--D~-~~~~~~~~~---------------~ 126 (438)
....-.+|.+++.|+-.-||+|+++.+.+.++.+. + ..++.+.. .. ......... .
T Consensus 20 i~g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~----~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~ 93 (150)
T d1t3ba1 20 VYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDL----G--ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAE 93 (150)
T ss_dssp EECCTTCSEEEEEEECTTCHHHHHHHTTHHHHHHT----T--EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHH
T ss_pred EECCCCCCEEEEEEECCCCHHHHHHhHHHHHHhcc----C--ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHh
Confidence 34444578999999999999999999999887643 2 44554443 11 111111110 0
Q ss_pred cCCc-ccccCC-ChHHHHHHhhhcCcCccceEEEe
Q 013684 127 CMPW-LAVPYS-DLETKKALNRKFDIEGIPCLVVL 159 (438)
Q Consensus 127 ~~~~-~~~~~~-d~~~~~~l~~~~~v~~~P~~~lv 159 (438)
.... ...... ....+..+++.+||+++|++++.
T Consensus 94 ~~~~~~~~~~~~~i~~~~~la~~lGv~GTPt~~~~ 128 (150)
T d1t3ba1 94 KGNLPKEVKTPNIVKKHYELGIQFGVRGTPSIVTS 128 (150)
T ss_dssp TTCCCSSCCCSSHHHHHHHHHHHHTCCSSCEEECT
T ss_pred hhccccchhhhhHHHHHHHHHHhcCcCCCCEEEEc
Confidence 1110 011111 12345788999999999988864
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.00 E-value=0.00031 Score=59.01 Aligned_cols=104 Identities=12% Similarity=0.231 Sum_probs=70.3
Q ss_pred CEEecccc-CCCEEEEEEe-ccCCccchh-hHHHHHHHHHHH-hcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccC-C
Q 013684 62 EEVKVSDL-EGKVTALYFS-ANWYPPCGN-FTGVLVDVYEEL-RNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY-S 136 (438)
Q Consensus 62 ~~v~l~~~-~gk~vll~F~-a~wC~~C~~-~~p~l~~l~~~~-~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~-~ 136 (438)
++++++++ +||.|+|++. +..-|.|.. ++|.+.+.+++| +..|. -+|+.||+| ++...+.|.+.++...+.+ +
T Consensus 32 ~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gv-d~I~~iSvn-D~fv~~aW~~~~~~~~I~~ls 109 (179)
T d1xiya1 32 TSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNF-DDIYCITNN-DIYVLKSWFKSMDIKKIKYIS 109 (179)
T ss_dssp EEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCC-SEEEEEESS-CHHHHHHHHHHTTCCSSEEEE
T ss_pred eEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCC-ceEEEEecC-CHHHHHHHHhhcCcceEEEee
Confidence 35677775 7877666655 778899965 699999999998 56762 278999997 5566666666555433332 2
Q ss_pred ChHHHHHHhhhcCcC-----------ccceEEEecCCCCCCCcccccc
Q 013684 137 DLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 137 d~~~~~~l~~~~~v~-----------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.. .++.+.+|+. .....++|+ ||.+.+...
T Consensus 110 D~~--g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid----dg~I~~~~v 151 (179)
T d1xiya1 110 DGN--SSFTDSMNMLVDKSNFFMGMRPWRFVAIVE----NNILVKMFQ 151 (179)
T ss_dssp CTT--SHHHHHTTCEEECGGGTCCEEECCEEEEEE----TTEEEEEEE
T ss_pred CCc--hHHHHhhhcccccccCCCeeEEeeEEEEEE----CCEEEEEEE
Confidence 333 6777777752 334567777 887776544
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=96.86 E-value=0.0023 Score=45.31 Aligned_cols=60 Identities=12% Similarity=0.225 Sum_probs=41.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+|||+|.+....|.+ . ++.+..+.++.+.+. .+..+.+
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~-------~---------~i~~~~~~i~~~~~~--------------------~~~~~~~ 46 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDR-------A---------GLAYNTVDISLDDEA--------------------RDYVMAL 46 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------T---------TCCCEEEETTTCHHH--------------------HHHHHHT
T ss_pred EEEEeCCCChhHHHHHHHHHH-------c---------CCceEEEEccCCHHH--------------------HHHHHHh
Confidence 456788999999987766543 2 466777788766432 3445667
Q ss_pred CcCceeeEEEECCCCcEEE
Q 013684 320 DVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~~ 338 (438)
|...+|.++ + +|+.+.
T Consensus 47 g~~tvP~i~-i--~g~~ig 62 (74)
T d1r7ha_ 47 GYVQAPVVE-V--DGEHWS 62 (74)
T ss_dssp TCBCCCEEE-E--TTEEEE
T ss_pred CCCCcCEEE-E--CCEEEe
Confidence 889999865 4 566653
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.78 E-value=0.0022 Score=53.00 Aligned_cols=50 Identities=12% Similarity=0.211 Sum_probs=42.0
Q ss_pred EeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 64 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 64 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
+.+-+-.+++.++.|+...||+|+++.+.+.++.+++.+.+ .+.++.+..
T Consensus 17 ~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 66 (172)
T d1z6ma1 17 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLF 66 (172)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred CeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhcccc-ceeeeeccc
Confidence 45666667899999999999999999999999999998875 577777665
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=96.60 E-value=0.0016 Score=55.72 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=31.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.+++.++.|+..+||+|..+.|.+. ++.+.++ +++.++.+.+.
T Consensus 112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~----------~~v~~~~~~~~ 157 (195)
T d1un2a_ 112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLP----------EGVKMTKYHVN 157 (195)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSC----------TTCCEEEEECS
T ss_pred CCCceEEEEEecCCccccccchhhhHHHHHHhhcC----------CCcEEEEEecC
Confidence 4678899999999999999999775 4444443 34667666654
|
| >d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: ZZ domain domain: CREB-binding protein, CBP species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.45 E-value=0.00024 Score=46.65 Aligned_cols=31 Identities=19% Similarity=0.712 Sum_probs=25.8
Q ss_pred CcccCccCCCCCceeEEcCCC-CCCccCccccc
Q 013684 398 PFICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA 429 (438)
Q Consensus 398 ~~~c~~C~~~~~~w~~~c~~c-~~~~~~~c~~~ 429 (438)
.|.|+.|++.- +=+|+|..| ||||+..|-.+
T Consensus 6 ~~tCd~C~~~i-~~Ry~C~~C~DfDLC~~C~~~ 37 (52)
T d1tota1 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHHHH
T ss_pred EEECcCCCCcC-CCceECCCCCCcccHHHHhcC
Confidence 57899998764 459999999 99999999643
|
| >d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: ZZ domain domain: Zinc finger ZZ-type-containing protein 3, ZZZ3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.31 E-value=0.00047 Score=48.32 Aligned_cols=32 Identities=22% Similarity=0.706 Sum_probs=27.9
Q ss_pred CcccCccCCCC-CceeEEcCCC----CCCccCccccc
Q 013684 398 PFICCDCDEQG-SGWAYQCLEC----GYEVHPKCVRA 429 (438)
Q Consensus 398 ~~~c~~C~~~~-~~w~~~c~~c----~~~~~~~c~~~ 429 (438)
.+.|+.|++.. .+-+|+|..| ||||+..|-..
T Consensus 14 ~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~ 50 (69)
T d2fc7a1 14 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDC 50 (69)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTC
T ss_pred CeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcC
Confidence 47999999874 7779999999 89999999753
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.0036 Score=44.50 Aligned_cols=59 Identities=12% Similarity=0.271 Sum_probs=39.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+..|..+|||+|.+....|.+ . ++.+..+.++.+.+. .+..+..
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~-------~---------~i~y~~~~i~~~~~~--------------------~~~~~~~ 46 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMEN-------R---------GFDFEMINVDRVPEA--------------------AEALRAQ 46 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------T---------TCCCEEEETTTCHHH--------------------HHHHHHT
T ss_pred EEEEeCCCCccHHHHHHHHHh-------c---------CceeEEEeecCCHHH--------------------HHHHHhc
Confidence 456788999999987776643 2 466677777766432 2333456
Q ss_pred CcCceeeEEEECCCCcEE
Q 013684 320 DVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~ 337 (438)
|.+.+|.+++ +|+.+
T Consensus 47 g~~tvP~i~i---~~~~i 61 (76)
T d1h75a_ 47 GFRQLPVVIA---GDLSW 61 (76)
T ss_dssp TCCSSCEEEE---TTEEE
T ss_pred CCCCCCEEEE---CCEEE
Confidence 8899999664 45554
|
| >d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: ZZ domain domain: Zinc finger ZZ-type-containing protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.00064 Score=49.60 Aligned_cols=30 Identities=30% Similarity=0.839 Sum_probs=26.4
Q ss_pred cccCccCCC-CCceeEEcCCC-CCCccCcccc
Q 013684 399 FICCDCDEQ-GSGWAYQCLEC-GYEVHPKCVR 428 (438)
Q Consensus 399 ~~c~~C~~~-~~~w~~~c~~c-~~~~~~~c~~ 428 (438)
..|+.|++. -.|-+|+|..| ||||+..|-.
T Consensus 25 v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C~~ 56 (85)
T d2dipa1 25 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFD 56 (85)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHH
T ss_pred eECCCCCCCCcCcceEEcCCCCCccchHHHHC
Confidence 579999875 68899999999 9999999954
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.0044 Score=51.89 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=35.4
Q ss_pred cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
..++++++.|+.-.||+|+.+.+.|..+.+..+..+..+.++...+
T Consensus 16 ~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 61 (188)
T d1fvka_ 16 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV 61 (188)
T ss_dssp CTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEEC
T ss_pred CCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEec
Confidence 3578899999999999999999988777666555444466666655
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=95.59 E-value=0.012 Score=48.67 Aligned_cols=34 Identities=15% Similarity=0.380 Sum_probs=30.1
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN 103 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~ 103 (438)
.+++.++.|+..-||+|+.+.+.+.++.+++...
T Consensus 17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~ 50 (181)
T d1beda_ 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG 50 (181)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT
T ss_pred CCCCEEEEEECCCCccchhhhhhhhhHhhhcccc
Confidence 5688999999999999999999999999887554
|
| >d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Kinase suppressor of Ras, Ksr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.54 E-value=0.0037 Score=40.30 Aligned_cols=32 Identities=22% Similarity=0.675 Sum_probs=27.6
Q ss_pred CcccCccCCCCCceeEEcCCCCCCccCcccccc
Q 013684 398 PFICCDCDEQGSGWAYQCLECGYEVHPKCVRAV 430 (438)
Q Consensus 398 ~~~c~~C~~~~~~w~~~c~~c~~~~~~~c~~~~ 430 (438)
.+.|++|.++-. +.|+|.+|+|-.|.+|+...
T Consensus 14 ~~tC~~C~~~l~-qg~~C~~C~~~~Hk~C~~~~ 45 (49)
T d1kbea_ 14 SQVCNVCQKSMI-FGVKCKHCRLKCHNKCTKEA 45 (49)
T ss_dssp SCCCSSSCCSSC-CEEEETTTTEEESSSCTTTS
T ss_pred CCCchhhchhhh-CcCCcCCCCChHhHhhcccC
Confidence 456999998875 78999999999999998654
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.45 E-value=0.07 Score=41.05 Aligned_cols=75 Identities=20% Similarity=0.335 Sum_probs=51.6
Q ss_pred cccCCCEEEEEEec-CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 013684 232 SSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 310 (438)
Q Consensus 232 ~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 310 (438)
+.+++.+.++.|.+ ..|+.|..+...++++++ +. +.+.+.....+...
T Consensus 18 ~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~-lS----------dki~~~~~~~~~~e-------------------- 66 (119)
T d1a8la1 18 SKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSE-LT----------DKLSYEIVDFDTPE-------------------- 66 (119)
T ss_dssp GGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHT-TC----------TTEEEEEEETTSHH--------------------
T ss_pred HhCCCCEEEEEEecCCCchhHHHHHHHHHHHHh-hC----------CCeEEEEeccCcch--------------------
Confidence 44556666776665 579999987776666542 22 35777766666443
Q ss_pred hhHHHHHhcCcCceeeEEEECCCCc---EEEc
Q 013684 311 TIKELTKYFDVQGIPCLVIIGPEGK---TVTK 339 (438)
Q Consensus 311 ~~~~l~~~~~v~~~P~~~lid~~G~---i~~~ 339 (438)
..++++.|+|...|++.+.+ +|+ |++.
T Consensus 67 -~~~~~~~~~ver~Ps~~i~~-~g~~~gIrF~ 96 (119)
T d1a8la1 67 -GKELAKRYRIDRAPATTITQ-DGKDFGVRYF 96 (119)
T ss_dssp -HHHHHHHTTCCSSSEEEEEE-TTBCCSEEEE
T ss_pred -hhhHHHhhccccCceEEEec-CCcccceEEE
Confidence 47889999999999999885 343 5554
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.013 Score=42.44 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=28.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
++.|.-++||+|.+....|.++..++. ++.+.-+.++
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~-----------~i~~~~~~~~ 39 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERD-----------DFQYQYVDIR 39 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS-----------SCEEEEECHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCC-----------CceEEEEecC
Confidence 456888999999998888888776665 4667666654
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=95.40 E-value=0.014 Score=40.92 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=36.5
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|..+|||+|.+....|.+ .| +....+.+|.+.+. .+..+.++...+|
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~-------~~--i~~~~~~i~~~~~~---------------------~~~~~~~g~~tvP 52 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDR-------AG--LAYNTVDISLDDEA---------------------RDYVMALGYVQAP 52 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------TT--CCCEEEETTTCHHH---------------------HHHHHHTTCBCCC
T ss_pred EEEEeCCCChhHHHHHHHHHH-------cC--CceEEEEccCCHHH---------------------HHHHHHhCCCCcC
Confidence 567889999999997665543 34 55556666655431 3444567888999
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
..++
T Consensus 53 ~i~i 56 (74)
T d1r7ha_ 53 VVEV 56 (74)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=95.28 E-value=0.046 Score=38.40 Aligned_cols=71 Identities=20% Similarity=0.351 Sum_probs=44.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+..|..++|+.|......+.+ . .++.+.-|+++.+ .++.++|
T Consensus 2 ltLyt~~~C~LCe~A~~~l~~-------~--------~~~~~~~vdI~~d-----------------------~~l~~~y 43 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALAQ-------A--------RAGAFFSVFIDDD-----------------------AALESAY 43 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHHH-------T--------TCCCEEEEECTTC-----------------------HHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHh-------c--------cCCcEEEEEccCC-----------------------HHHHHHh
Confidence 345678999999865433221 1 1456777777765 5677888
Q ss_pred CcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHH
Q 013684 320 DVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEK 365 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~ 365 (438)
+.. +|.+ ++ .+|.... +||+++.+.++..
T Consensus 44 ~~~-IPVl-~~-~~~~~l~--------------w~fd~~~l~~~L~ 72 (75)
T d1ttza_ 44 GLR-VPVL-RD-PMGRELD--------------WPFDAPRLRAWLD 72 (75)
T ss_dssp TTT-CSEE-EC-TTCCEEE--------------SCCCHHHHHHHHH
T ss_pred CCe-eeEE-EE-CCeeEEc--------------CccCHHHHHHHHh
Confidence 866 7954 34 3555554 3688877766543
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.18 E-value=0.0064 Score=46.15 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=42.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+|||+|.+....|.++.-++ ..+.++-+..+.+...++.+ +.+..
T Consensus 14 Vviysk~~Cp~C~~ak~ll~~~~~~~-----------~~~~~~e~d~~~d~~~~~~~------------------l~~~~ 64 (105)
T d1ktea_ 14 VVVFIKPTCPFCRKTQELLSQLPFKE-----------GLLEFVDITATSDTNEIQDY------------------LQQLT 64 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCT-----------TSEEEEEGGGSTTHHHHHHH------------------HHHHH
T ss_pred EEEEECCCCchHHHHHHHHHHhCCcc-----------ceeeeeecccccccHHHHHH------------------Hhhcc
Confidence 45788999999999877665432222 24566666666554444332 34445
Q ss_pred CcCceeeEEEECCCCcEEE
Q 013684 320 DVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~~ 338 (438)
|.+.+|.+|+ +|+.+.
T Consensus 65 g~~tvPqIfi---~g~~IG 80 (105)
T d1ktea_ 65 GARTVPRVFI---GKECIG 80 (105)
T ss_dssp SCCCSCEEEE---TTEEEE
T ss_pred CCCcCcEEEE---CCEEEe
Confidence 7788998764 677663
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=94.99 E-value=0.035 Score=39.65 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=39.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+..|..+|||+|.+....|.+ . ++.+..+.++.+.+. ..++.+..
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~-------~---------~i~y~~~di~~~~~~-------------------~~~~~~~~ 47 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSS-------K---------GVSFQELPIDGNAAK-------------------REEMIKRS 47 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHH-------H---------TCCCEEEECTTCSHH-------------------HHHHHHHH
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------c---------CCCeEEEeccchHHH-------------------HHHHHHHh
Confidence 345778999999977665543 2 455666777655332 24455667
Q ss_pred CcCceeeEEEECCCCcEEE
Q 013684 320 DVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~~ 338 (438)
|...+|.++ + +|+.+.
T Consensus 48 g~~tvP~i~-i--~~~~IG 63 (82)
T d1fova_ 48 GRTTVPQIF-I--DAQHIG 63 (82)
T ss_dssp SSCCSCEEE-E--TTEEEE
T ss_pred CCCCCCeEE-E--CCEEEe
Confidence 888999876 4 566663
|
| >d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: RAF-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.0082 Score=39.19 Aligned_cols=34 Identities=26% Similarity=0.623 Sum_probs=28.8
Q ss_pred CCcccCccCCCCCceeEEcCCCCCCccCccccccC
Q 013684 397 GPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAVD 431 (438)
Q Consensus 397 ~~~~c~~C~~~~~~w~~~c~~c~~~~~~~c~~~~~ 431 (438)
.+-.|+.|++.-. ..|+|.+|+|-.|.+|+...+
T Consensus 13 ~~~~C~~C~~~i~-~g~~C~~C~~~~H~~C~~~v~ 46 (52)
T d1faqa_ 13 KLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTKVP 46 (52)
T ss_dssp SCEECTTSSSEEC-SEEECTTTTCCBCSTTSSSSS
T ss_pred CCcCCccCCCccc-cCCCcCCCCChhhhhhhcccc
Confidence 4679999998764 579999999999999997553
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=94.77 E-value=0.028 Score=39.59 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=35.0
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|..+|||+|.+....|.+ .| +....++++.+.+. .+..+..|...+|
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~-------~~--i~y~~~~i~~~~~~---------------------~~~~~~~g~~tvP 52 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMEN-------RG--FDFEMINVDRVPEA---------------------AEALRAQGFRQLP 52 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------TT--CCCEEEETTTCHHH---------------------HHHHHHTTCCSSC
T ss_pred EEEEeCCCCccHHHHHHHHHh-------cC--ceeEEEeecCCHHH---------------------HHHHHhcCCCCCC
Confidence 467889999999987665533 34 44455566655431 2333456888899
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 53 ~i~i 56 (76)
T d1h75a_ 53 VVIA 56 (76)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8665
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=94.29 E-value=0.076 Score=36.91 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=37.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|+.++||+|.+....|.+. ++.+..+.++.+.+ ...+.+..
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~----------------~i~~~~~~v~~~~~--------------------~~~~~~~~ 50 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDK----------------GLSFEEIILGHDAT--------------------IVSVRAVS 50 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH----------------TCCCEEEETTTTCC--------------------HHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHHc----------------CCCeEEEEccCcHH--------------------HHHHHHHh
Confidence 3567889999999987665542 34455555554321 23445567
Q ss_pred CcCceeeEEEECCCCcEE
Q 013684 320 DVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~ 337 (438)
+...+|.++ + +|+.+
T Consensus 51 ~~~tvP~i~-i--~g~~I 65 (74)
T d1nm3a1 51 GRTTVPQVF-I--GGKHI 65 (74)
T ss_dssp CCSSSCEEE-E--TTEEE
T ss_pred CCccCCEEE-E--CCEEE
Confidence 788999865 4 56666
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.02 E-value=0.062 Score=37.80 Aligned_cols=61 Identities=15% Similarity=0.257 Sum_probs=44.9
Q ss_pred EEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccce
Q 013684 76 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPC 155 (438)
Q Consensus 76 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~ 155 (438)
|..+.+.|+.|.+.....+++.+++ |.+.++.-|. |. .++. .|||..+|.
T Consensus 4 IkVlg~gC~~C~~~~~~v~~a~~e~---gi~a~v~kv~-----------------------d~---~ei~-~ygVmstPa 53 (77)
T d1iloa_ 4 IQIYGTGCANCQMLEKNAREAVKEL---GIDAEFEKIK-----------------------EM---DQIL-EAGLTALPG 53 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHT---TCCEEEEEEC-----------------------SH---HHHH-HHTCSSSSC
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHc---CCceEEEEeC-----------------------CH---HHHH-HcCCcCCCE
Confidence 4455899999999988888877764 4457776551 22 5666 499999999
Q ss_pred EEEecCCCCCCCccccc
Q 013684 156 LVVLQPYDDKDDATLHD 172 (438)
Q Consensus 156 ~~lvd~~~~~G~v~~~~ 172 (438)
+++ ||+++..+
T Consensus 54 lvI------dg~vv~~G 64 (77)
T d1iloa_ 54 LAV------DGELKIMG 64 (77)
T ss_dssp EEE------TTEEEECS
T ss_pred EEE------CCEEEEEe
Confidence 888 77777554
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.95 E-value=0.16 Score=38.83 Aligned_cols=70 Identities=17% Similarity=0.314 Sum_probs=47.1
Q ss_pred ccccCCCEEEEEEec-cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHH
Q 013684 66 VSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 144 (438)
Q Consensus 66 l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 144 (438)
++.+++.+.++.|.. ..|+.|..+...|.++.+- . ..+.+.....+.... .++
T Consensus 17 ~~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-S---dki~~~~~~~~~~e~----------------------~~~ 70 (119)
T d1a8la1 17 FSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-T---DKLSYEIVDFDTPEG----------------------KEL 70 (119)
T ss_dssp GGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-C---TTEEEEEEETTSHHH----------------------HHH
T ss_pred HHhCCCCEEEEEEecCCCchhHHHHHHHHHHHHhh-C---CCeEEEEeccCcchh----------------------hhH
Confidence 345565666666664 5799998876666655443 2 236666555443322 788
Q ss_pred hhhcCcCccceEEEecC
Q 013684 145 NRKFDIEGIPCLVVLQP 161 (438)
Q Consensus 145 ~~~~~v~~~P~~~lvd~ 161 (438)
++.|++...|++.+.+.
T Consensus 71 ~~~~~ver~Ps~~i~~~ 87 (119)
T d1a8la1 71 AKRYRIDRAPATTITQD 87 (119)
T ss_dssp HHHTTCCSSSEEEEEET
T ss_pred HHhhccccCceEEEecC
Confidence 99999999999998873
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.66 E-value=0.046 Score=41.07 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=35.8
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|..+|||+|......|.+ +.-....+.+.-++.+.+... ....+.+..+...+|
T Consensus 14 Vviysk~~Cp~C~~ak~ll~~----~~~~~~~~~~~e~d~~~d~~~-------------------~~~~l~~~~g~~tvP 70 (105)
T d1ktea_ 14 VVVFIKPTCPFCRKTQELLSQ----LPFKEGLLEFVDITATSDTNE-------------------IQDYLQQLTGARTVP 70 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHH----SCBCTTSEEEEEGGGSTTHHH-------------------HHHHHHHHHSCCCSC
T ss_pred EEEEECCCCchHHHHHHHHHH----hCCccceeeeeecccccccHH-------------------HHHHHhhccCCCcCc
Confidence 567889999999997665544 222222344544444433221 113344556778899
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
..++
T Consensus 71 qIfi 74 (105)
T d1ktea_ 71 RVFI 74 (105)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
|
| >d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Protein kinase c-gamma species: Rat (Rattus rattus) [TaxId: 10117]
Probab=93.41 E-value=0.039 Score=37.72 Aligned_cols=34 Identities=35% Similarity=0.786 Sum_probs=27.6
Q ss_pred CCcccCccCCCCCce---eEEcCCCCCCccCcccccc
Q 013684 397 GPFICCDCDEQGSGW---AYQCLECGYEVHPKCVRAV 430 (438)
Q Consensus 397 ~~~~c~~C~~~~~~w---~~~c~~c~~~~~~~c~~~~ 430 (438)
.+-+|+.|.+.-.++ .|+|.+|++-.|.+|+...
T Consensus 18 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v 54 (66)
T d1tbna_ 18 SPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSV 54 (66)
T ss_dssp SCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTTS
T ss_pred CCcCCcCCCCcccCcccCccccCcccCeEChHHhccc
Confidence 456899998765442 4999999999999999754
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=93.32 E-value=0.06 Score=38.29 Aligned_cols=55 Identities=11% Similarity=0.262 Sum_probs=34.3
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
+..|..+|||+|.+....|.+ .| +.+..++++.+.+ ...++.+..|...+|
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~-------~~--i~y~~~di~~~~~--------------------~~~~~~~~~g~~tvP 53 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSS-------KG--VSFQELPIDGNAA--------------------KREEMIKRSGRTTVP 53 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHH-------HT--CCCEEEECTTCSH--------------------HHHHHHHHHSSCCSC
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------cC--CCeEEEeccchHH--------------------HHHHHHHHhCCCCCC
Confidence 456788999999986655433 23 3344455554322 124566667888899
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 54 ~i~i 57 (82)
T d1fova_ 54 QIFI 57 (82)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8764
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=93.03 E-value=0.038 Score=39.74 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=28.4
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
++.|..+|||+|.+....|.++..+++ ++.+..++++
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~----~i~~~~~~~~ 39 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERD----DFQYQYVDIR 39 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS----SCEEEEECHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCC----CceEEEEecC
Confidence 567899999999998888888777763 3666666554
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=92.11 E-value=0.08 Score=36.77 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=16.4
Q ss_pred EEEEeccCCccchhhHHHHHH
Q 013684 75 ALYFSANWYPPCGNFTGVLVD 95 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~ 95 (438)
++.|+.++||+|++....|.+
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~ 27 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHD 27 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 467889999999997765554
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=90.68 E-value=0.3 Score=37.81 Aligned_cols=71 Identities=10% Similarity=0.080 Sum_probs=47.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.++++++.|+... .........+.+++++|+++ +.++.++.+.. ..
T Consensus 22 ~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~k----------i~Fv~vd~~~~-----------------------~~ 67 (133)
T d2djka1 22 AGIPLAYIFAETA-EERKELSDKLKPIAEAQRGV----------INFGTIDAKAF-----------------------GA 67 (133)
T ss_dssp TTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTT----------SEEEEECTTTT-----------------------GG
T ss_pred CCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCc----------eEEEEEeHHHh-----------------------HH
Confidence 3567777777653 34566777888888888765 55655543322 34
Q ss_pred HHHhcCc--CceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDV--QGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v--~~~P~~~lid~~G~i~~~ 339 (438)
..+.||+ ...|.+++++.++...+.
T Consensus 68 ~l~~~gl~~~~~P~~~i~~~~~~~~~~ 94 (133)
T d2djka1 68 HAGNLNLKTDKFPAFAIQEVAKNQKFP 94 (133)
T ss_dssp GTTTTTCCSSSSSEEEEECTTTCCBCC
T ss_pred HHHHhcCCcccCCcEEEEEcCCCceec
Confidence 5667787 568999999877765544
|
| >d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Beta-chimaerin, middle domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.43 E-value=0.11 Score=34.85 Aligned_cols=34 Identities=32% Similarity=0.702 Sum_probs=27.3
Q ss_pred CCcccCccCCCCC--c-eeEEcCCCCCCccCcccccc
Q 013684 397 GPFICCDCDEQGS--G-WAYQCLECGYEVHPKCVRAV 430 (438)
Q Consensus 397 ~~~~c~~C~~~~~--~-w~~~c~~c~~~~~~~c~~~~ 430 (438)
.+-+|+.|.+.-. . ..|+|.+|++-.|.+|....
T Consensus 14 ~pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v 50 (62)
T d1xa6a3 14 GPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHV 50 (62)
T ss_dssp SCCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTTS
T ss_pred CCCCCcccCccccccccCeEEcCCCCchhhHHHHhhC
Confidence 4568999988543 2 46999999999999998754
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=89.71 E-value=0.45 Score=32.99 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=32.1
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
+..|..++|+.|......|.+ ..+ +++..|+++.+ .++.++|+.. +|
T Consensus 2 ltLyt~~~C~LCe~A~~~l~~------~~~--~~~~~vdI~~d------------------------~~l~~~y~~~-IP 48 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALAQ------ARA--GAFFSVFIDDD------------------------AALESAYGLR-VP 48 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHHH------TTC--CCEEEEECTTC------------------------HHHHHHHTTT-CS
T ss_pred EEEECCCCccHHHHHHHHHHh------ccC--CcEEEEEccCC------------------------HHHHHHhCCe-ee
Confidence 567889999999875543322 123 55666666654 5677888866 79
Q ss_pred eE
Q 013684 155 CL 156 (438)
Q Consensus 155 ~~ 156 (438)
.+
T Consensus 49 Vl 50 (75)
T d1ttza_ 49 VL 50 (75)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.36 E-value=0.48 Score=33.01 Aligned_cols=59 Identities=12% Similarity=0.232 Sum_probs=43.4
Q ss_pred EecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcC
Q 013684 243 FSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ 322 (438)
Q Consensus 243 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 322 (438)
.+++.|+.|.+.....++..+++. -..++.-|. +. .++. +|||-
T Consensus 6 Vlg~gC~~C~~~~~~v~~a~~e~g----------i~a~v~kv~---d~----------------------~ei~-~ygVm 49 (77)
T d1iloa_ 6 IYGTGCANCQMLEKNAREAVKELG----------IDAEFEKIK---EM----------------------DQIL-EAGLT 49 (77)
T ss_dssp EECSSSSTTHHHHHHHHHHHHHTT----------CCEEEEEEC---SH----------------------HHHH-HHTCS
T ss_pred EeCCCCccHHHHHHHHHHHHHHcC----------CceEEEEeC---CH----------------------HHHH-HcCCc
Confidence 348999999999998888877653 245666652 32 4555 59999
Q ss_pred ceeeEEEECCCCcEEEcc
Q 013684 323 GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 323 ~~P~~~lid~~G~i~~~~ 340 (438)
++|.++ | ||+++..+
T Consensus 50 stPalv-I--dg~vv~~G 64 (77)
T d1iloa_ 50 ALPGLA-V--DGELKIMG 64 (77)
T ss_dssp SSSCEE-E--TTEEEECS
T ss_pred CCCEEE-E--CCEEEEEe
Confidence 999976 4 78888764
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=87.35 E-value=0.089 Score=44.22 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=31.2
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
.+++.++.|+.-+||+|..+.|.|..+.+-.+..+.++.++.+.+
T Consensus 112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~ 156 (195)
T d1un2a_ 112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV 156 (195)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEEC
T ss_pred CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEec
Confidence 478889999999999999999987643333222233455665554
|
| >d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Diacylglycerol kinase delta species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.68 E-value=0.15 Score=36.42 Aligned_cols=34 Identities=26% Similarity=0.539 Sum_probs=26.9
Q ss_pred CCcccCccCCCCC----ceeEEcCCCCCCccCcccccc
Q 013684 397 GPFICCDCDEQGS----GWAYQCLECGYEVHPKCVRAV 430 (438)
Q Consensus 397 ~~~~c~~C~~~~~----~w~~~c~~c~~~~~~~c~~~~ 430 (438)
..-.|+.|++.=. ...|+|..|++-.|.+|....
T Consensus 37 ~~~~C~~C~~~i~~~~~~qg~~C~~C~~~~H~~C~~~v 74 (84)
T d1r79a_ 37 VSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL 74 (84)
T ss_dssp TTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC
T ss_pred CCCCCcccCcccCCccccCcEecCcCCchhhhhhcCCC
Confidence 3568999988642 235999999999999998654
|
| >d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Protein kinase C-delta (PKCdelta) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.03 E-value=0.13 Score=32.67 Aligned_cols=34 Identities=35% Similarity=0.762 Sum_probs=26.5
Q ss_pred CCcccCccCCCCCc--e-eEEcCCCCCCccCcccccc
Q 013684 397 GPFICCDCDEQGSG--W-AYQCLECGYEVHPKCVRAV 430 (438)
Q Consensus 397 ~~~~c~~C~~~~~~--w-~~~c~~c~~~~~~~c~~~~ 430 (438)
.+-+|+.|.+.-.+ . .|+|.+|++-.|.+|....
T Consensus 10 ~~~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v 46 (50)
T d1ptqa_ 10 SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKV 46 (50)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTS
T ss_pred CCcCCcccCCcccCcccCcEECCCCCCeeChhHcccc
Confidence 45789999875432 2 4999999999999998643
|
| >d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.67 E-value=1.4 Score=33.59 Aligned_cols=71 Identities=13% Similarity=0.181 Sum_probs=48.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.|+++++.|+.+-= .-......+.+++++|+++ +.++.++.+. ...
T Consensus 16 ~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fkgk----------i~Fv~~D~~~-----------------------~~~ 61 (125)
T d2b5ea3 16 SGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRGL----------MNFVSIDARK-----------------------FGR 61 (125)
T ss_dssp TTSCEEEEEESSHH-HHHHHHHHHHHHHHHTTTT----------CEEEEEEHHH-----------------------HTT
T ss_pred cCCCEEEEEeCChH-HHHHHHHHHHHHHHHhcCe----------eEEEEEchHH-----------------------hHH
Confidence 47788888887532 2345777788888888765 6666665431 245
Q ss_pred HHHhcCcC-ceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQ-GIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~-~~P~~~lid~~G~i~~~ 339 (438)
..+.||+. ..|.+++++.+....+.
T Consensus 62 ~l~~fgl~e~~P~~~i~~~~~~~ky~ 87 (125)
T d2b5ea3 62 HAGNLNMKEQFPLFAIHDMTEDLKYG 87 (125)
T ss_dssp HHHHTTCCSCSSEEEEEETTTTEEEE
T ss_pred HHHHcCCCccCCcEEEEecccCcccc
Confidence 66788874 48999998766655544
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=82.14 E-value=3.2 Score=34.98 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=30.0
Q ss_pred CEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 237 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 237 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
+.|+=.|.+.||..|..-...|.+|.+. +++-.+.+.+|
T Consensus 6 ~aVVElFTSqgCssCPpAd~~L~~L~~~------------~~Vi~La~HVd 44 (225)
T d2axoa1 6 KGVVELFTSQGCASCPPADEALRKMIQK------------GDVVGLSYHVD 44 (225)
T ss_dssp CCEEEEEECTTCTTCHHHHHHHHHHHHH------------TSSEEEEEECS
T ss_pred CcEEEEeeCCCCCCCHHHHHHHHHhhCC------------CCEEEEEeccc
Confidence 3456667788999999998888888642 25788888886
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=80.74 E-value=2.4 Score=35.80 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=45.2
Q ss_pred CEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChH---HHHHHhhhc
Q 013684 72 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE---TKKALNRKF 148 (438)
Q Consensus 72 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~---~~~~l~~~~ 148 (438)
+.|+=.|.+.||..|...-..|.++.+. .++..+.+.+|. ..-.+|.. +|.... .+....+.+
T Consensus 6 ~aVVElFTSqgCssCPpAd~~L~~L~~~-----~~Vi~La~HVdY--------Wd~lGw~D-~fa~~~~t~RQ~~Y~~~~ 71 (225)
T d2axoa1 6 KGVVELFTSQGCASCPPADEALRKMIQK-----GDVVGLSYHVDY--------WNYLGWTD-SLASKENTERQYGYMRAL 71 (225)
T ss_dssp CCEEEEEECTTCTTCHHHHHHHHHHHHH-----TSSEEEEEECST--------TCSSSSCC-TTCCHHHHHHHHHHHHHT
T ss_pred CcEEEEeeCCCCCCCHHHHHHHHHhhCC-----CCEEEEEecccc--------ccccCCCC-CCCCchhhHHHHHHHHhc
Confidence 5677788899999999998888888653 358888888872 11123321 122222 234567777
Q ss_pred CcCccce
Q 013684 149 DIEGIPC 155 (438)
Q Consensus 149 ~v~~~P~ 155 (438)
+...+||
T Consensus 72 g~~~vyT 78 (225)
T d2axoa1 72 GRNGVYT 78 (225)
T ss_dssp TCSCCCS
T ss_pred CCCCCCc
Confidence 8876554
|